Hit (GenBank Accn) |
Product |
Source Genome |
Eval. |
Ident.(%) |
|
putative type IV prepilin |
NC_008800 (Yersinia enterocolitica 8081) |
7e-66 |
100 |
|
type IV pilus biogenesis protein |
NC_009708 (Yersinia pseudotuberculosis IP 31758) |
6e-63 |
83 |
|
type IV prepilin cluster, prepilin |
NC_018659 (Escherichia coli 2011C-3493) |
4e-46 |
59 |
|
PilS domain-containing protein |
NC_016904 (Escherichia coli KO11FL) |
4e-46 |
59 |
|
IncI1 conjugal transfer prepilin protein PilS |
NC_017642 (Escherichia coli UMNK88) |
4e-46 |
59 |
|
Type IVB thin major prepilin |
NC_017637 (Escherichia coli W) |
4e-46 |
59 |
|
type IV prepilin cluster; prepilin |
NC_017665 (Escherichia coli W) |
4e-46 |
59 |
|
hypothetical protein |
NC_005126 (Photorhabdus luminescens TTO1) |
4e-46 |
58 |
|
type IV pepilin |
NC_021811 (Salmonella enterica 41578) |
3e-44 |
57 |
|
hypothetical protein |
NC_021813 (Salmonella enterica CFSAN002069) |
3e-44 |
57 |
|
typeIV prepilin |
NC_017718 (Salmonella enterica SL1344) |
3e-44 |
57 |
|
typeIV prepilin |
NC_011081 (Salmonella enterica SL476) |
3e-44 |
57 |
|
typeIV prepilin |
NC_017675 (Salmonella enterica ST4/74) |
3e-44 |
57 |
|
type IV prepilin PilS |
NC_011419 (Escherichia coli SE11) |
7e-44 |
57 |
|
hypothetical protein |
NC_017445 (Erwinia sp. Ejp617) |
1e-42 |
54 |
|
hypothetical protein |
NC_010102 (Salmonella enterica SGSC4150; SPB7) |
2e-40 |
53 |
|
type IV prepilin |
NC_014121 (Enterobacter cloacae ATCC 13047) |
6e-40 |
53 |
|
PilS domain-containing protein |
NC_022268 (Serratia sp. ATCC 39006) |
5e-32 |
52 |
|
putative conjugative transfer outer membrane protein PilS |
NC_017554 (Pantoea ananatis PA13) |
2e-30 |
47 |
|
type IV prepilin PilS |
NC_016816 (Pantoea ananatis LMG 5342) |
7e-27 |
42 |
|
PilS type IV pilus prepilin |
NC_012751 (Candidatus Hamiltonella defensa T5A) |
9e-27 |
43 |
|
prepilin |
NC_003198 (Salmonella enterica CT18) |
4e-22 |
50 |
|
Prepilin |
NC_016832 (Salmonella enterica P-stx-12) |
4e-22 |
50 |
|
prepilin |
NC_004631 (Salmonella enterica Ty2) |
4e-22 |
50 |
|
prepilin |
NC_021176 (Salmonella enterica Ty21a) |
5e-22 |
50 |
|
prepilin |
NC_017390 (Erwinia pyrifoliae DSM 12163) |
3e-21 |
41 |
|
type IV prepilin |
NC_012214 (Erwinia pyrifoliae Ep1/96) |
3e-21 |
41 |
SELECT distinct ph.genome_accn, ph.id_genome_orf, ph.position_begin_pai, ph.position_end_pai, ph.position_begin_genome, ph.position_end_genome, ph.identity, ph.qcoverage, ph.tcoverage,
ph.evalue, ph.score, ph.multi_hsp, ph.multi_strand, ph.source_class, hsp, go.name, go.name_alt, go.pid
FROM pai_homolog as ph, genome_orf as go
WHERE ph.pai_accn='NC_008800_P2' AND ph.id_pai_orf='52' AND match_level='P'
AND go.genome_accn=ph.genome_accn AND ph.id_genome_orf=go.id_genome_orf
ORDER BY ph.score desc, ph.evalue asc, ph.identity desc