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Homologs of APECO1_3484 gene of NC_008563_P4

DNA-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) ROD_49621
( - )

NC_013716
(Citrobacter rodentium ICC168)

0.0

89.4

2) ECSP_4659
( - )

NC_013008
(Escherichia coli TW14359)

e-234

87.4

3) G2583_4403
( - )

NC_013941
(Escherichia coli CB9615)

e-232

87.7

4) ROD_10891
( - )

NC_013716
(Citrobacter rodentium ICC168)

e-204

89.9

• Sequence Alignments

1) ROD_49621 in NC_013716


>NC_008563_P4|52|G51|117625244|YP_854327.1|Escherichia_coli_APEC_O1|+|53250..54095|-|APECO1_3484|hypothetical 
          Length = 846

 Score = 1242 bits (3205), Expect = 0.0
 Identities = 690/772 (89%)
 Strand = Plus / Plus

Query: 1   atgtcagatatcacaatctcccgcccggaactggtcaacgggcatacggacgttatctgc 60
           |||||||| |||||||||||||| |||||| |||||| ||||||||||||||||||||||
Sbjct: 1   atgtcagacatcacaatctcccgtccggaagtggtcaccgggcatacggacgttatctgc 60

Query: 61  tcaaccagtatccgccacattctggctgtacgaaagagtacgttgctgcaaatcgacaca 120
           || ||||||||||| ||| || || | ||||| ||     |  |||  |||| ||| || 
Sbjct: 61  tccaccagtatccgacacgttgtgacggtacggaatgcagcactgcaacaaaccgaaacg 120

Query: 121 cttacccggcaactggtagaaatctcagcaatgacagaaagtattggcggtaaaaccgca 180
           |||| ||||||||||| |||||||||||   |||||| | | |||||||| |||||||| 
Sbjct: 121 cttatccggcaactggcagaaatctcagtgctgacagcaggcattggcggcaaaaccgcc 180

Query: 181 ctggactgggcgatgaaacaggattttcgctgcggttgctggctgatggaaaaacctgaa 240
           ||||||||||||||||||||| |||||||||| || |||||||||||||||||||| |||
Sbjct: 181 ctggactgggcgatgaaacagaattttcgctgtggctgctggctgatggaaaaaccggaa 240

Query: 241 acggcaatgaaagccatcacccgcaatctcgatcgcgaaatctggcgtgacctgatgcaa 300
            | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 241 gcagcaatgaaagccatcacccgcaatctcgatcgagaaatctggcgtgacctgatgcaa 300

Query: 301 cgttcctggatgctgtcattaatggatgcgcaggcccgtgatacatggtaccggtcactg 360
           |||||  ||||||| || ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 301 cgttcagggatgctttccttaatggatgcacaggcccgtgatacatggtaccgatcactg 360

Query: 361 gagtacgataattttccggaaattagcgaagcgaacattctgagcacatttgaacaactg 420
           || || ||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 361 gaatatgataattttccggaaatcagtgaagcgaacattctgagcacatttgaacaactg 420

Query: 421 caccagaacaaggatgaggtgtttgagcgaggagtggtcaacgtcttcaggggactgagc 480
           ||||||||||  ||||| |||||||||||||| ||| ||||||||||||||||||||| |
Sbjct: 421 caccagaacatagatgaagtgtttgagcgaggggtgatcaacgtcttcaggggactgaac 480

Query: 481 tagaattacaaaactaattcaccctgcaaatttggcagtaaaattatcgtcaacaacctg 540
           | |||||||||||||||||  ||||| ||||||||||||||||||||||||||||| |||
Sbjct: 481 tggaattacaaaactaattgcccctgtaaatttggcagtaaaattatcgtcaacaatctg 540

Query: 541 gtgaggtgggaccggtggggatttcatcttatcaccgggcaacaggcagaccgacttgcc 600
           ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 541 gtgagatgggaccggtggggatttcatcttatcaccgggcaacaggcagatcgacttgcc 600

Query: 601 gacctggaaagaatgctgcatctgttcagcggcaaaccgatccccgacaaccgggaaaac 660
           |||||||||||||||||| || ||||||||||||||||||| || |||||||||||||||
Sbjct: 601 gacctggaaagaatgctgtatttgttcagcggcaaaccgattcctgacaaccgggaaaac 660

Query: 661 atcactattcatctggatgagcacatccggtctgttcagggtaaagagtgctatgaagat 720
           || || |||||||||||||| |||||||  || ||||||||||||| |||||||||||||
Sbjct: 661 ataaccattcatctggatgatcacatccactcagttcagggtaaagcgtgctatgaagat 720

Query: 721 gaaatgttcagaattaaatactttaagaagggatctgcacacatcactttca 772
           || |||||||| || | ||||||||||||||| || || |||||||| ||||
Sbjct: 721 gagatgttcagcatcagatactttaagaagggctccgcgcacatcacgttca 772

2) ECSP_4659 in NC_013008


>NC_008563_P4|52|G51|117625244|YP_854327.1|Escherichia_coli_APEC_O1|+|53250..54095|-|APECO1_3484|hypothetical 
          Length = 846

 Score = 806 bits (2079), Expect = e-234
 Identities = 471/558 (84%)
 Strand = Plus / Plus

Query: 165 cattggcggcaaaaccgccctggaccgggcgatgaaacaggattttcactgcggctgctg 224
           ||||||||||||||||||||||||| |||||||||||||| |||||| ||| ||||||||
Sbjct: 162 cattggcggcaaaaccgccctggactgggcgatgaaacagaattttcgctgtggctgctg 221

Query: 225 gctgatggagaaacctgaaaccgcaatgaaagccatcacccgcaacctcgactgcgaaat 284
           ||||||||| ||||| ||| | ||||||||||||||||||||||| |||||  | |||||
Sbjct: 222 gctgatggaaaaaccggaagcagcaatgaaagccatcacccgcaatctcgatcgagaaat 281

Query: 285 ctggcgtgacctgatgcaacgctccgggatgctgagtctgatggatgcacagggctagga 344
           ||||||||||||||||||||| || ||||||||     | ||||||||||||| |   ||
Sbjct: 282 ctggcgtgacctgatgcaacgttcagggatgctttccttaatggatgcacaggcccgtga 341

Query: 345 tacatggtaccgctcactggagtacgataatattccggaaatcagcgaggcgaatatcat 404
           |||||||||||| |||||||| || |||||| ||||||||||||| || ||||| ||  |
Sbjct: 342 tacatggtaccgatcactggaatatgataattttccggaaatcagtgaagcgaacattct 401

Query: 405 gaatgcattcaaacaactgcaccagagtaaggatgaagtgtttgagcgtggggtgatcaa 464
           ||   ||||  |||||||||||||||  |  ||||||||||||||||| |||||||||||
Sbjct: 402 gagcacatttgaacaactgcaccagaacatagatgaagtgtttgagcgaggggtgatcaa 461

Query: 465 cgtcttcagagggccgaac-ggaattacaaaaccaattccccctgtaaattcggcagtaa 523
           ||||||||| || | |||| ||||||||||||| |||| |||||||||||| ||||||||
Sbjct: 462 cgtcttcaggggactgaactggaattacaaaactaattgcccctgtaaatttggcagtaa 521

Query: 524 aattatcgtcaacaacttggtgagatgggacagatggagatttcatcttatcagtggaat 583
           |||||||||||||||  |||||||||||||| | ||| |||||||||||||||  ||   
Sbjct: 522 aattatcgtcaacaatctggtgagatgggaccggtggggatttcatcttatcaccgggca 581

Query: 584 gcaggcagatcgcttagctgacctggaaagaatgttgcatctgctcagcggtaaaccgct 643
            |||||||||||  | || ||||||||||||||| || || || ||||||| |||||| |
Sbjct: 582 acaggcagatcgacttgccgacctggaaagaatgctgtatttgttcagcggcaaaccgat 641

Query: 644 ccccaacaaccgagggaatatcaccattaatctggatgaccacctacagtccgttcaggg 703
            ||  ||||||| |  || || |||||| |||||||||| ||| | || || ||||||||
Sbjct: 642 tcctgacaaccgggaaaacataaccattcatctggatgatcacatccactcagttcaggg 701

Query: 704 taaagagcgctatgaaga 721
           ||||| | ||||||||||
Sbjct: 702 taaagcgtgctatgaaga 719


 Score = 300 bits (775), Expect = 1e-81
 Identities = 156/160 (98%)
 Strand = Plus / Plus

Query: 1   atgtcaggcatcataatctcccgtccggaagtggacaccgggcatacggacgttatctgc 60
           ||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1   atgtcagacatcacaatctcccgtccggaagtggtcaccgggcatacggacgttatctgc 60

Query: 61  tccaccagtatccgacacgttgtgacggtacggaatgcagcactgcaacaaaccgaaacg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tccaccagtatccgacacgttgtgacggtacggaatgcagcactgcaacaaaccgaaacg 120

Query: 121 cttatccggcaactggcagaaatctcagtcctgacagcag 160
           ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 121 cttatccggcaactggcagaaatctcagtgctgacagcag 160

3) G2583_4403 in NC_013941


>NC_008563_P4|52|G51|117625244|YP_854327.1|Escherichia_coli_APEC_O1|+|53250..54095|-|APECO1_3484|hypothetical 
          Length = 846

 Score = 801 bits (2068), Expect = e-232
 Identities = 470/558 (84%)
 Strand = Plus / Plus

Query: 165 cattggcggcaaaaccgccctggaccgggcgatgaaacaggattttcactgcggctgctg 224
           ||||||||||||||||||||||||| |||||||||||||| |||||| ||| ||||||||
Sbjct: 162 cattggcggcaaaaccgccctggactgggcgatgaaacagaattttcgctgtggctgctg 221

Query: 225 gctgatggagaaacctgaaaccgcaatgaaagccatcacccgcaacctcgactgcgaaat 284
           ||||||||| ||||| ||| | ||||||||||||||||||||||| |||||  | |||||
Sbjct: 222 gctgatggaaaaaccggaagcagcaatgaaagccatcacccgcaatctcgatcgagaaat 281

Query: 285 ctggcgtgacctgatgcaacgctccgggatgctgagtctgatggatgcacagggctagga 344
           ||||||||||||||||||||| || ||||||||     | ||||||||||||| |   ||
Sbjct: 282 ctggcgtgacctgatgcaacgttcagggatgctttccttaatggatgcacaggcccgtga 341

Query: 345 tacatggtaccgctcactggagtacgataatattccggaaatcagcgaggcgaatatcat 404
           |||||||||||| |||||||| || |||||| ||||||||||||| || ||||| ||  |
Sbjct: 342 tacatggtaccgatcactggaatatgataattttccggaaatcagtgaagcgaacattct 401

Query: 405 gaatgcattcaaacaactgcaccagagtaaggatgaagtgtttgagcgtggggtgatcaa 464
           ||   ||||  |||||||||||||||  |  ||||||||||||||||| |||||||||||
Sbjct: 402 gagcacatttgaacaactgcaccagaacatagatgaagtgtttgagcgaggggtgatcaa 461

Query: 465 cgtcttcagagggccgaac-ggaattacaaaaccaattccccctgtaaattcggcagtaa 523
           ||||||||| || | |||| ||||||||||||| |||| |||||||||||| ||||||||
Sbjct: 462 cgtcttcaggggactgaactggaattacaaaactaattgcccctgtaaatttggcagtaa 521

Query: 524 aattatcgtcaacaacttggtgagatggtacagatggagatttcatcttatcagtggaat 583
           |||||||||||||||  ||||||||||| || | ||| |||||||||||||||  ||   
Sbjct: 522 aattatcgtcaacaatctggtgagatgggaccggtggggatttcatcttatcaccgggca 581

Query: 584 gcaggcagatcgcttagctgacctggaaagaatgttgcatctgctcagcggtaaaccgct 643
            |||||||||||  | || ||||||||||||||| || || || ||||||| |||||| |
Sbjct: 582 acaggcagatcgacttgccgacctggaaagaatgctgtatttgttcagcggcaaaccgat 641

Query: 644 ccccaacaaccgagggaatatcaccattaatctggatgaccacctacagtccgttcaggg 703
            ||  ||||||| |  || || |||||| |||||||||| ||| | || || ||||||||
Sbjct: 642 tcctgacaaccgggaaaacataaccattcatctggatgatcacatccactcagttcaggg 701

Query: 704 taaagagcgctatgaaga 721
           ||||| | ||||||||||
Sbjct: 702 taaagcgtgctatgaaga 719


 Score = 300 bits (775), Expect = 1e-81
 Identities = 156/160 (98%)
 Strand = Plus / Plus

Query: 1   atgtcaggcatcataatctcccgtccggaagtggacaccgggcatacggacgttatctgc 60
           ||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1   atgtcagacatcacaatctcccgtccggaagtggtcaccgggcatacggacgttatctgc 60

Query: 61  tccaccagtatccgacacgttgtgacggtacggaatgcagcactgcaacaaaccgaaacg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tccaccagtatccgacacgttgtgacggtacggaatgcagcactgcaacaaaccgaaacg 120

Query: 121 cttatccggcaactggcagaaatctcagtcctgacagcag 160
           ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 121 cttatccggcaactggcagaaatctcagtgctgacagcag 160


 Score = 118 bits (305), Expect = 9e-27
 Identities = 68/75 (91%)
 Strand = Plus / Plus

Query: 729 atactttaagaagggc-ccgcacacatcacattcagaaagccagagctggttgacaggct 787
           |||||||||||||||| |||| |||||||| ||||| || ||||||||||||||||| ||
Sbjct: 738 atactttaagaagggctccgcgcacatcacgttcaggaaaccagagctggttgacagact 797

Query: 788 taatgatattattgc 802
            ||||||||||||||
Sbjct: 798 gaatgatattattgc 812

4) ROD_10891 in NC_013716


>NC_008563_P4|52|G51|117625244|YP_854327.1|Escherichia_coli_APEC_O1|+|53250..54095|-|APECO1_3484|hypothetical 
          Length = 846

 Score = 708 bits (1827), Expect = e-204
 Identities = 402/455 (88%)
 Strand = Plus / Plus

Query: 1   atgtcagatatcacaatctccagtctggaagtggtcaacgggcatacggatgttatctgc 60
           |||||||| |||||||||||| ||| ||||||||||| |||||||||||| |||||||||
Sbjct: 1   atgtcagacatcacaatctcccgtccggaagtggtcaccgggcatacggacgttatctgc 60

Query: 61  tccaccagtatccgacacgttgtgacggtacggaatatagcactgcaacaaaccgaagcg 120
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||
Sbjct: 61  tccaccagtatccgacacgttgtgacggtacggaatgcagcactgcaacaaaccgaaacg 120

Query: 121 cttatccggcaactggcagaaaactcagcactgacagaaatgattggaggtaaaaccgcc 180
           |||||||||||||||||||||| |||||  ||||||| |   ||||| || |||||||||
Sbjct: 121 cttatccggcaactggcagaaatctcagtgctgacagcaggcattggcggcaaaaccgcc 180

Query: 181 ctggactgggccgatgaaacaggattttcgctgtggctgctggctgacggagaaacctga 240
           ||||||||||| |||||||||| |||||||||||||||||||||||| ||| ||||| ||
Sbjct: 181 ctggactgggc-gatgaaacagaattttcgctgtggctgctggctgatggaaaaaccgga 239

Query: 241 aaccgcgatgaaaaccatcacctggaatctcgaccgtgaaatctggcgtgacctgatgca 300
           | | || |||||| |||||||| | |||||||| || |||||||||||||||||||||||
Sbjct: 240 agcagcaatgaaagccatcacccgcaatctcgatcgagaaatctggcgtgacctgatgca 299

Query: 301 acgttccgggatgctgagtctgatggatgcacaggacggcgatacatggcagcggtcact 360
           |||||| ||||||||     | ||||||||||||| | | ||||||||| | || |||||
Sbjct: 300 acgttcagggatgctttccttaatggatgcacaggcccgtgatacatggtaccgatcact 359

Query: 361 ggagtacgataattttccggaaatcagtgaagagaatatcctgagcagatttgaacaact 420
           ||| || ||||||||||||||||||||||||| ||| || ||||||| ||||||||||||
Sbjct: 360 ggaatatgataattttccggaaatcagtgaagcgaacattctgagcacatttgaacaact 419

Query: 421 gcaccagagcagggatgaggtgtttgagcgagggg 455
           |||||||| ||  ||||| ||||||||||||||||
Sbjct: 420 gcaccagaacatagatgaagtgtttgagcgagggg 454


 Score = 290 bits (747), Expect = 2e-78
 Identities = 157/172 (91%)
 Strand = Plus / Plus

Query: 461 caacgttttcaggggactaagctgggattacaaaaccaacacaccctgtaaatttggcag 520
           |||||| ||||||||||| | |||| |||||||||| ||    |||||||||||||||||
Sbjct: 459 caacgtcttcaggggactgaactggaattacaaaactaattgcccctgtaaatttggcag 518

Query: 521 taaaattatcgtcaacaatctggtgagatgggaccggtggggatttcatcttatcaccgg 580
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 taaaattatcgtcaacaatctggtgagatgggaccggtggggatttcatcttatcaccgg 578

Query: 581 gcaacaggccgaccgacttgccgatctggaaagaatactgcatctgttcagc 632
           ||||||||| || ||||||||||| ||||||||||| ||| || ||||||||
Sbjct: 579 gcaacaggcagatcgacttgccgacctggaaagaatgctgtatttgttcagc 630


 Score = 261 bits (673), Expect = 9e-70
 Identities = 144/157 (92%)
 Strand = Plus / Plus

Query: 655 gggaaaacatcaccattcatctggatgaccacatccagtctgttcagggtaaagagtgct 714
           |||||||||| ||||||||||||||||| |||||||| || ||||||||||||| |||||
Sbjct: 653 gggaaaacataaccattcatctggatgatcacatccactcagttcagggtaaagcgtgct 712

Query: 715 atgaagatgagatgttcatcattaaatattttaagaagggctccgcgcatatcacgttca 774
           |||||||||||||||||| ||| | ||| |||||||||||||||||||| ||||||||||
Sbjct: 713 atgaagatgagatgttcagcatcagatactttaagaagggctccgcgcacatcacgttca 772

Query: 775 ggaaaccagaactggttgacagattgaatgctattat 811
           |||||||||| |||||||||||| |||||| ||||||
Sbjct: 773 ggaaaccagagctggttgacagactgaatgatattat 809


 Score = 12 bits (30), Expect = 9e+05
 Identities = 6/6 (100%)
 Strand = Plus / Plus

Query: 646 ccgatt 651
           ||||||
Sbjct: 637 ccgatt 642