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Homologs of SAR0069 gene of NC_002952_R1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) SAR0069
( YP_039537.1 )

sensor kinase

NC_002952
(Staphylococcus aureus MRSA252)

0.0

100

2) CA347_69
( YP_008126953.1 )

his Kinase A domain protein

NC_021554
(Staphylococcus aureus CA-347)

0.0

100

3) SaurJH1_0060
( YP_001315212.1 )

osmosensitive K channel His kinase sensor

NC_009632
(Staphylococcus aureus JH1)

0.0

100

4) SaurJH9_0058
( YP_001245446.1 )

osmosensitive K+ channel signal transduction histidine kinase

NC_009487
(Staphylococcus aureus JH9)

0.0

100

5) kdpD
( YP_190032.1 )

sensor histidine kinase KdpD

NC_002976
(Staphylococcus epidermidis RP62A)

0.0

100

6) SH0032
( YP_251947.1 )

hypothetical protein

NC_007168
(Staphylococcus haemolyticus JCSC1435)

0.0

7) SA2981_0071
( YP_005740821.1 )

Osmosensitive K+ channel histidine kinase KdpD

NC_017340
(Staphylococcus aureus 04-02981)

0.0

8) kdpD
( YP_001440660.1 )

hypothetical protein

NC_009782
(Staphylococcus aureus Mu3)

0.0

9) kdpD
( NP_370595.1 )

sensor protein KdpD

NC_002758
(Staphylococcus aureus Mu50)

0.0

10) kdpD
( NP_373307.1 )

hypothetical protein

NC_002745
(Staphylococcus aureus N315)

0.0

11) SLGD_00057
( YP_003470332.1 )

Osmosensitive K+ channel histidine kinase KdpD

NC_013893
(Staphylococcus lugdunensis HKU09-01)

0.0

12) kdpD(SCCmec)
( YP_005759211.1 )

sensor kinase protein

NC_017353
(Staphylococcus lugdunensis N920143)

0.0

13) SAMSHR1132_19030
( YP_005326405.1 )

sensor kinase protein

NC_016941
(Staphylococcus aureus MSHR1132)

0.0

14) SAOV_2120
( YP_005737557.1 )

two component sensor protein

NC_017337
(Staphylococcus aureus ED133)

0.0

15) M013TW_2037
( YP_005298417.1 )

Osmosensitive K+ channel histidine kinase KdpD

NC_016928
(Staphylococcus aureus M013)

0.0

16) kdpD
( YP_008588479.1 )

sensor kinase protein

NC_022443
(Staphylococcus aureus SA40)

0.0

17) kdpD
( YP_008586014.1 )

sensor kinase protein

NC_022442
(Staphylococcus aureus SA957)

0.0

18) MS7_2095
( YP_005758490.1 )

histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein

NC_017351
(Staphylococcus aureus 11819-97)

0.0

19) kdpD
( YP_006238316.1 )

sensor kinase protein

NC_017763
(Staphylococcus aureus HO 5096 0412)

0.0

20) kdpD
( YP_005755856.1 )

sensor kinase protein

NC_017349
(Staphylococcus aureus LGA251)

0.0

21) SAS1983
( YP_044093.1 )

sensor kinase

NC_002953
(Staphylococcus aureus MSSA476)

0.0

22) kdpD
( NP_646819.1 )

sensor protein KdpD

NC_003923
(Staphylococcus aureus MW2)

0.0

23) kdpD
( YP_186886.1 )

sensor histidine kinase KdpD

NC_002951
(Staphylococcus aureus COL)

0.0

24) kdpD
( YP_001333017.1 )

sensor histidine kinase KdpD

NC_009641
(Staphylococcus aureus Newman)

0.0

25) kdpD
( YP_005742768.1 )

Osmosensitive K+ channel histidine kinase KdpD

NC_017340
(Staphylococcus aureus 04-02981)

0.0

26) kdpD
( YP_008169195.1 )

Sensor protein KdpD

NC_021670
(Staphylococcus aureus Bmb9393)

0.0

27) ECTR2_1934
( YP_005750622.1 )

his Kinase A (phosphoacceptor) domain protein

NC_017343
(Staphylococcus aureus ECT-R 2)

0.0

28) kdpD
( YP_003282984.1 )

sensor histidine kinase KdpD

NC_013450
(Staphylococcus aureus ED98)

0.0

29) kdpD
( YP_494681.1 )

sensor histidine kinase, KdpD

NC_007793
(Staphylococcus aureus FPR3757)

0.0

30) SaurJH1_2153
( YP_001317269.1 )

osmosensitive K channel His kinase sensor

NC_009632
(Staphylococcus aureus JH1)

0.0

31) SaurJH9_2115
( YP_001247473.1 )

osmosensitive K+ channel signal transduction histidine kinase

NC_009487
(Staphylococcus aureus JH9)

0.0

32) kdpD
( YP_005745451.1 )

osmosensitive K+ channel histidine kinase

NC_017341
(Staphylococcus aureus JKD6008)

0.0

33) BN843_21160
( YP_007869142.1 )

Osmosensitive K+ channel histidine kinase KdpD

NC_021059
(Staphylococcus aureus M1)

0.0

34) kdpD
( YP_001442653.1 )

sensor protein

NC_009782
(Staphylococcus aureus Mu3)

0.0

35) kdpD
( NP_372602.1 )

sensor protein

NC_002758
(Staphylococcus aureus Mu50)

0.0

36) kdpD
( NP_375186.1 )

sensor protein KdpD

NC_002745
(Staphylococcus aureus N315)

0.0

37) SAOUHSC_02314
( YP_500793.1 )

sensor protein KdpD

NC_007795
(Staphylococcus aureus NCTC 8325)

0.0

38) kdpD
( YP_417422.1 )

two component sensor protein

NC_007622
(Staphylococcus aureus RF122)

0.0

39) SAI6T6_1015270
( YP_007584078.1 )

ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein

NC_020536
(Staphylococcus aureus ST228)

0.0

40) SAI5S5_1015250
( YP_007621791.1 )

ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein

NC_020566
(Staphylococcus aureus ST228)

0.0

41) SAI8T7_1015290
( YP_007623780.1 )

ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein

NC_020568
(Staphylococcus aureus ST228)

0.0

42) kdpD
( YP_007578091.1 )

Sensor histidine kinase KdpD

NC_020529
(Staphylococcus aureus ST228 (isolate=10388))

0.0

43) kdpD
( YP_007619807.1 )

Sensor histidine kinase KdpD

NC_020564
(Staphylococcus aureus ST228 (isolate=10497))

0.0

44) kdpD
( YP_007580099.1 )

Sensor histidine kinase KdpD

NC_020532
(Staphylococcus aureus ST228 (isolate=15532))

0.0

45) kdpD
( YP_007582064.1 )

Sensor histidine kinase KdpD

NC_020533
(Staphylococcus aureus ST228 (isolate=16035))

0.0

46) SAI7S6_1015310
( YP_007586045.1 )

ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein

NC_020537
(Staphylococcus aureus ST228 (isolate=18412))

0.0

47) SAT0131_02237
( YP_005753343.1 )

Osmosensitive K+ channel signal transduction histidine kinase

NC_017347
(Staphylococcus aureus T0131)

0.0

48) kdpD
( YP_001575950.1 )

sensor histidine kinase KdpD

NC_010079
(Staphylococcus aureus TCH1516)

0.0

49) kdpD
( YP_005732189.1 )

sensor kinase protein

NC_017331
(Staphylococcus aureus TW20)

0.0

50) SAVC_09275
( YP_005291442.1 )

sensor histidine kinase KdpD

NC_016912
(Staphylococcus aureus VC40)

0.0

51) SAAG_02668
( YP_008449972.1 )

sensor protein

NC_022113
(Staphylococcus aureus 55/2053)

0.0

52) kdpD
( YP_008485877.1 )

Osmosensitive K channel sensor histidine kinase KdpD, putative

NC_022222
(Staphylococcus aureus 6850)

0.0

53) CA347_2159
( YP_008128966.1 )

his Kinase A domain protein

NC_021554
(Staphylococcus aureus CA-347)

0.0

54) SAKOR_02044
( YP_008492232.1 )

Sensor protein kdpD

NC_022226
(Staphylococcus aureus CN1)

0.0

55) kdpD
( YP_041528.1 )

sensor kinase

NC_002952
(Staphylococcus aureus MRSA252)

0.0

56) kdpD
( YP_005747198.1 )

sensor histidine kinase KdpD

NC_017342
(Staphylococcus aureus TCH60)

0.0

57) kdpD
( YP_006710787.1 )

sensor kinase protein

NC_018608
(Staphylococcus aureus 08BA02176)

0.0

58) SAPIG2120
( YP_005734878.1 )

two component sensor protein

NC_017333
(Staphylococcus aureus ST398)

0.0

59) kdpD
( YP_006016415.1 )

two component sensor protein KdpD

NC_017568
(Staphylococcus pseudintermedius ED99)

0.0

60) SPSINT_0108
( YP_004148273.1 )

Osmosensitive K+ channel histidine kinase KdpD

NC_014925
(Staphylococcus pseudintermedius HKU10-03)

0.0

61) ST398NM01_2120
( YP_006196149.1 )

KdpD

NC_017673
(Staphylococcus aureus 71193)

0.0

62) kdpD
( YP_005740128.1 )

osmosensitive K+ channel histidine kinase

NC_017338
(Staphylococcus aureus JKD6159)

0.0

• Sequence Alignments

1) SAR0069 in NC_002952


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score = 1379 bits (5233),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 906/906 (100%), Positives = 906/906 (100%), Gaps = 0/906 (0%)

Query  1    MDNMLYINYDVIKRGCLMESTYKKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKI  60
            MDNMLYINYDVIKRGCLMESTYKKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKI
Sbjct  1    MDNMLYINYDVIKRGCLMESTYKKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKI  60

Query  61   GYIEPHQRPETNALVQQLPEISTSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNIS  120
            GYIEPHQRPETNALVQQLPEISTSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNIS
Sbjct  61   GYIEPHQRPETNALVQQLPEISTSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNIS  120

Query  121  KERHLKRYKDIEEILSHGIDVWTTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAF  180
            KERHLKRYKDIEEILSHGIDVWTTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAF
Sbjct  121  KERHLKRYKDIEEILSHGIDVWTTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAF  180

Query  181  EVVDISPNMLIQRLKAGKVYKKERLETAFSNFFTYENltelreltlrtVADIMSQKGQQY  240
            EVVDISPNMLIQRLKAGKVYKKERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQY
Sbjct  181  EVVDISPNMLIQRLKAGKVYKKERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQY  240

Query  241  KTKHTDITPHIAVAISGSIYNERVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYV  300
            KTKHTDITPHIAVAISGSIYNERVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYV
Sbjct  241  KTKHTDITPHIAVAISGSIYNERVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYV  300

Query  301  HKNLMLAKALGAEIKVLYAQDIAKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQI  360
            HKNLMLAKALGAEIKVLYAQDIAKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQI
Sbjct  301  HKNLMLAKALGAEIKVLYAQDIAKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQI  360

Query  361  NHVPHHFKLEIVPIHYIHSDKPTNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLD  420
            NHVPHHFKLEIVPIHYIHSDKPTNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLD
Sbjct  361  NHVPHHFKLEIVPIHYIHSDKPTNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLD  420

Query  421  KSESSAIILLMFFIGIIVLSIWTQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPI  480
            KSESSAIILLMFFIGIIVLSIWTQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPI
Sbjct  421  KSESSAIILLMFFIGIIVLSIWTQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPI  480

Query  481  TFATSIFASIFTSAILKNLKHQHSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQI  540
            TFATSIFASIFTSAILKNLKHQHSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQI
Sbjct  481  TFATSIFASIFTSAILKNLKHQHSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQI  540

Query  541  HQLLNQDVTVFLIQSKKVAAsnsfgnrsisssDKTHDAETLSWVIENESRAGKLTDTFPG  600
            HQLLNQDVTVFLIQSKKVAASNSFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG
Sbjct  541  HQLLNQDVTVFLIQSKKVAASNSFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG  600

Query  601  SKFLCIPIGTNPVKGVISIRFTDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSIL  660
            SKFLCIPIGTNPVKGVISIRFTDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSIL
Sbjct  601  SKFLCIPIGTNPVKGVISIRFTDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSIL  660

Query  661  KAEREATRSNFLHSISHDIRTPLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLH  720
            KAEREATRSNFLHSISHDIRTPLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLH
Sbjct  661  KAEREATRSNFLHSISHDIRTPLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLH  720

Query  721  TLVTNILSLTKLESSDIQIQRTPYlveelleefeeglIRRHQANHVIIENEDDASLINID  780
            TLVTNILSLTKLESSDIQIQRTPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINID
Sbjct  721  TLVTNILSLTKLESSDIQIQRTPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINID  780

Query  781  SKLILQVLFNLIDNALKHAESHSEIKLHVQHETNKIKFEMIDCGKGIPEEERQLIFNPYY  840
            SKLILQVLFNLIDNALKHAESHSEIKLHVQHETNKIKFEMIDCGKGIPEEERQLIFNPYY
Sbjct  781  SKLILQVLFNLIDNALKHAESHSEIKLHVQHETNKIKFEMIDCGKGIPEEERQLIFNPYY  840

Query  841  SGDNFKDNKKDSlglglylvqlilKQHNSELEYQPNTPQGSIFYFYLTVNPIEMEGAMDE  900
            SGDNFKDNKKDSLGLGLYLVQLILKQHNSELEYQPNTPQGSIFYFYLTVNPIEMEGAMDE
Sbjct  841  SGDNFKDNKKDSLGLGLYLVQLILKQHNSELEYQPNTPQGSIFYFYLTVNPIEMEGAMDE  900

Query  901  NNIIGR  906
            NNIIGR
Sbjct  901  NNIIGR  906

2) CA347_69 in NC_021554


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score = 1347 bits (5113),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 889/889 (100%), Positives = 889/889 (100%), Gaps = 0/889 (0%)

Query  1    MESTYKKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQ  60
            MESTYKKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQ
Sbjct  18   MESTYKKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQ  77

Query  61   LPEISTSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSH  120
            LPEISTSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSH
Sbjct  78   LPEISTSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSH  137

Query  121  GIDVWTTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAG  180
            GIDVWTTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAG
Sbjct  138  GIDVWTTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAG  197

Query  181  KVYKKERLETAFSNFFTYENltelreltlrtVADIMSQKGQQYKTKHTDITPHIAVAISG  240
            KVYKKERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISG
Sbjct  198  KVYKKERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISG  257

Query  241  SIYNERVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVL  300
            SIYNERVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVL
Sbjct  258  SIYNERVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVL  317

Query  301  YAQDIAKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYI  360
            YAQDIAKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYI
Sbjct  318  YAQDIAKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYI  377

Query  361  HSDKPTNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGII  420
            HSDKPTNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGII
Sbjct  378  HSDKPTNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGII  437

Query  421  VLSIWTQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILK  480
            VLSIWTQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILK
Sbjct  438  VLSIWTQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILK  497

Query  481  NLKHQHSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKK  540
            NLKHQHSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKK
Sbjct  498  NLKHQHSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKK  557

Query  541  VAAsnsfgnrsisssDKTHDAETLSWVIENESRAGKLTDTFPGSKFLCIPIGTNPVKGVI  600
            VAASNSFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPGSKFLCIPIGTNPVKGVI
Sbjct  558  VAASNSFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPGSKFLCIPIGTNPVKGVI  617

Query  601  SIRFTDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISH  660
            SIRFTDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISH
Sbjct  618  SIRFTDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISH  677

Query  661  DIRTPLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDI  720
            DIRTPLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDI
Sbjct  678  DIRTPLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDI  737

Query  721  QIQRTPYlveelleefeeglIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALK  780
            QIQRTPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALK
Sbjct  738  QIQRTPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALK  797

Query  781  HAESHSEIKLHVQHETNKIKFEMIDCGKGIPEEERQLIFNPYYSGDNFKDNKKDSlglgl  840
            HAESHSEIKLHVQHETNKIKFEMIDCGKGIPEEERQLIFNPYYSGDNFKDNKKDSLGLGL
Sbjct  798  HAESHSEIKLHVQHETNKIKFEMIDCGKGIPEEERQLIFNPYYSGDNFKDNKKDSLGLGL  857

Query  841  ylvqlilKQHNSELEYQPNTPQGSIFYFYLTVNPIEMEGAMDENNIIGR  889
            YLVQLILKQHNSELEYQPNTPQGSIFYFYLTVNPIEMEGAMDENNIIGR
Sbjct  858  YLVQLILKQHNSELEYQPNTPQGSIFYFYLTVNPIEMEGAMDENNIIGR  906

3) SaurJH1_0060 in NC_009632


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score = 1347 bits (5113),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 889/889 (100%), Positives = 889/889 (100%), Gaps = 0/889 (0%)

Query  1    MESTYKKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQ  60
            MESTYKKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQ
Sbjct  18   MESTYKKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQ  77

Query  61   LPEISTSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSH  120
            LPEISTSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSH
Sbjct  78   LPEISTSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSH  137

Query  121  GIDVWTTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAG  180
            GIDVWTTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAG
Sbjct  138  GIDVWTTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAG  197

Query  181  KVYKKERLETAFSNFFTYENltelreltlrtVADIMSQKGQQYKTKHTDITPHIAVAISG  240
            KVYKKERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISG
Sbjct  198  KVYKKERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISG  257

Query  241  SIYNERVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVL  300
            SIYNERVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVL
Sbjct  258  SIYNERVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVL  317

Query  301  YAQDIAKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYI  360
            YAQDIAKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYI
Sbjct  318  YAQDIAKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYI  377

Query  361  HSDKPTNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGII  420
            HSDKPTNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGII
Sbjct  378  HSDKPTNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGII  437

Query  421  VLSIWTQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILK  480
            VLSIWTQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILK
Sbjct  438  VLSIWTQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILK  497

Query  481  NLKHQHSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKK  540
            NLKHQHSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKK
Sbjct  498  NLKHQHSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKK  557

Query  541  VAAsnsfgnrsisssDKTHDAETLSWVIENESRAGKLTDTFPGSKFLCIPIGTNPVKGVI  600
            VAASNSFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPGSKFLCIPIGTNPVKGVI
Sbjct  558  VAASNSFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPGSKFLCIPIGTNPVKGVI  617

Query  601  SIRFTDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISH  660
            SIRFTDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISH
Sbjct  618  SIRFTDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISH  677

Query  661  DIRTPLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDI  720
            DIRTPLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDI
Sbjct  678  DIRTPLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDI  737

Query  721  QIQRTPYlveelleefeeglIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALK  780
            QIQRTPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALK
Sbjct  738  QIQRTPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALK  797

Query  781  HAESHSEIKLHVQHETNKIKFEMIDCGKGIPEEERQLIFNPYYSGDNFKDNKKDSlglgl  840
            HAESHSEIKLHVQHETNKIKFEMIDCGKGIPEEERQLIFNPYYSGDNFKDNKKDSLGLGL
Sbjct  798  HAESHSEIKLHVQHETNKIKFEMIDCGKGIPEEERQLIFNPYYSGDNFKDNKKDSLGLGL  857

Query  841  ylvqlilKQHNSELEYQPNTPQGSIFYFYLTVNPIEMEGAMDENNIIGR  889
            YLVQLILKQHNSELEYQPNTPQGSIFYFYLTVNPIEMEGAMDENNIIGR
Sbjct  858  YLVQLILKQHNSELEYQPNTPQGSIFYFYLTVNPIEMEGAMDENNIIGR  906

4) SaurJH9_0058 in NC_009487


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score = 1347 bits (5113),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 889/889 (100%), Positives = 889/889 (100%), Gaps = 0/889 (0%)

Query  1    MESTYKKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQ  60
            MESTYKKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQ
Sbjct  18   MESTYKKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQ  77

Query  61   LPEISTSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSH  120
            LPEISTSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSH
Sbjct  78   LPEISTSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSH  137

Query  121  GIDVWTTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAG  180
            GIDVWTTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAG
Sbjct  138  GIDVWTTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAG  197

Query  181  KVYKKERLETAFSNFFTYENltelreltlrtVADIMSQKGQQYKTKHTDITPHIAVAISG  240
            KVYKKERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISG
Sbjct  198  KVYKKERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISG  257

Query  241  SIYNERVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVL  300
            SIYNERVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVL
Sbjct  258  SIYNERVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVL  317

Query  301  YAQDIAKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYI  360
            YAQDIAKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYI
Sbjct  318  YAQDIAKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYI  377

Query  361  HSDKPTNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGII  420
            HSDKPTNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGII
Sbjct  378  HSDKPTNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGII  437

Query  421  VLSIWTQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILK  480
            VLSIWTQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILK
Sbjct  438  VLSIWTQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILK  497

Query  481  NLKHQHSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKK  540
            NLKHQHSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKK
Sbjct  498  NLKHQHSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKK  557

Query  541  VAAsnsfgnrsisssDKTHDAETLSWVIENESRAGKLTDTFPGSKFLCIPIGTNPVKGVI  600
            VAASNSFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPGSKFLCIPIGTNPVKGVI
Sbjct  558  VAASNSFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPGSKFLCIPIGTNPVKGVI  617

Query  601  SIRFTDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISH  660
            SIRFTDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISH
Sbjct  618  SIRFTDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISH  677

Query  661  DIRTPLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDI  720
            DIRTPLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDI
Sbjct  678  DIRTPLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDI  737

Query  721  QIQRTPYlveelleefeeglIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALK  780
            QIQRTPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALK
Sbjct  738  QIQRTPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALK  797

Query  781  HAESHSEIKLHVQHETNKIKFEMIDCGKGIPEEERQLIFNPYYSGDNFKDNKKDSlglgl  840
            HAESHSEIKLHVQHETNKIKFEMIDCGKGIPEEERQLIFNPYYSGDNFKDNKKDSLGLGL
Sbjct  798  HAESHSEIKLHVQHETNKIKFEMIDCGKGIPEEERQLIFNPYYSGDNFKDNKKDSLGLGL  857

Query  841  ylvqlilKQHNSELEYQPNTPQGSIFYFYLTVNPIEMEGAMDENNIIGR  889
            YLVQLILKQHNSELEYQPNTPQGSIFYFYLTVNPIEMEGAMDENNIIGR
Sbjct  858  YLVQLILKQHNSELEYQPNTPQGSIFYFYLTVNPIEMEGAMDENNIIGR  906

5) kdpD in NC_002976


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score = 1347 bits (5113),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 889/889 (100%), Positives = 889/889 (100%), Gaps = 0/889 (0%)

Query  1    MESTYKKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQ  60
            MESTYKKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQ
Sbjct  18   MESTYKKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQ  77

Query  61   LPEISTSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSH  120
            LPEISTSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSH
Sbjct  78   LPEISTSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSH  137

Query  121  GIDVWTTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAG  180
            GIDVWTTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAG
Sbjct  138  GIDVWTTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAG  197

Query  181  KVYKKERLETAFSNFFTYENltelreltlrtVADIMSQKGQQYKTKHTDITPHIAVAISG  240
            KVYKKERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISG
Sbjct  198  KVYKKERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISG  257

Query  241  SIYNERVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVL  300
            SIYNERVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVL
Sbjct  258  SIYNERVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVL  317

Query  301  YAQDIAKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYI  360
            YAQDIAKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYI
Sbjct  318  YAQDIAKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYI  377

Query  361  HSDKPTNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGII  420
            HSDKPTNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGII
Sbjct  378  HSDKPTNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGII  437

Query  421  VLSIWTQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILK  480
            VLSIWTQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILK
Sbjct  438  VLSIWTQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILK  497

Query  481  NLKHQHSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKK  540
            NLKHQHSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKK
Sbjct  498  NLKHQHSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKK  557

Query  541  VAAsnsfgnrsisssDKTHDAETLSWVIENESRAGKLTDTFPGSKFLCIPIGTNPVKGVI  600
            VAASNSFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPGSKFLCIPIGTNPVKGVI
Sbjct  558  VAASNSFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPGSKFLCIPIGTNPVKGVI  617

Query  601  SIRFTDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISH  660
            SIRFTDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISH
Sbjct  618  SIRFTDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISH  677

Query  661  DIRTPLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDI  720
            DIRTPLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDI
Sbjct  678  DIRTPLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDI  737

Query  721  QIQRTPYlveelleefeeglIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALK  780
            QIQRTPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALK
Sbjct  738  QIQRTPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALK  797

Query  781  HAESHSEIKLHVQHETNKIKFEMIDCGKGIPEEERQLIFNPYYSGDNFKDNKKDSlglgl  840
            HAESHSEIKLHVQHETNKIKFEMIDCGKGIPEEERQLIFNPYYSGDNFKDNKKDSLGLGL
Sbjct  798  HAESHSEIKLHVQHETNKIKFEMIDCGKGIPEEERQLIFNPYYSGDNFKDNKKDSLGLGL  857

Query  841  ylvqlilKQHNSELEYQPNTPQGSIFYFYLTVNPIEMEGAMDENNIIGR  889
            YLVQLILKQHNSELEYQPNTPQGSIFYFYLTVNPIEMEGAMDENNIIGR
Sbjct  858  YLVQLILKQHNSELEYQPNTPQGSIFYFYLTVNPIEMEGAMDENNIIGR  906

6) SH0032 in NC_007168


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score = 1343 bits (5098),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 886/889 (99%), Positives = 888/889 (99%), Gaps = 0/889 (0%)

Query  1    MESTYKKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQ  60
            MESTYKKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQ
Sbjct  18   MESTYKKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQ  77

Query  61   LPEISTSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSH  120
            LPEISTSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSH
Sbjct  78   LPEISTSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSH  137

Query  121  GIDVWTTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAG  180
            GIDVWTTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAG
Sbjct  138  GIDVWTTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAG  197

Query  181  KVYKKERLETAFSNFFTYENltelreltlrtVADIMSQKGQQYKTKHTDITPHIAVAISG  240
            KVYKKERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISG
Sbjct  198  KVYKKERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISG  257

Query  241  SIYNERVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVL  300
            SIYNERVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVL
Sbjct  258  SIYNERVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVL  317

Query  301  YAQDIAKALTDWCNLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYI  360
            YAQDIAKALTDWC+LAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYI
Sbjct  318  YAQDIAKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYI  377

Query  361  HSDKPTNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGII  420
            HSDKPTNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGII
Sbjct  378  HSDKPTNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGII  437

Query  421  VLSIWTQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILK  480
            VLSIWTQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILK
Sbjct  438  VLSIWTQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILK  497

Query  481  NLKHQHSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGEQIHQLLNQDVTVFLIQSKK  540
            NLKHQHSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAG+QIHQLLNQDVTVFLIQSKK
Sbjct  498  NLKHQHSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKK  557

Query  541  VAAsnsfgnrsisssDKTHDAETLSWVIENESRAGKLTDTFPGSKFLCIPIGTNPVKGVI  600
            VAASNSFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPGSKFLCIPIGTNPVKGVI
Sbjct  558  VAASNSFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPGSKFLCIPIGTNPVKGVI  617

Query  601  SIRFTDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISH  660
            SIRFTDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISH
Sbjct  618  SIRFTDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISH  677

Query  661  DIRTPLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDI  720
            DIRTPLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDI
Sbjct  678  DIRTPLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDI  737

Query  721  QIQRTPYlveelleefeeglIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALK  780
            QIQRTPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALK
Sbjct  738  QIQRTPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALK  797

Query  781  HAESHSEIKLHVQHETNKIKFEMIDCGKGIPEEERQLIFNLYYSGDNFKDNKKDSlglgl  840
            HAESHSEIKLHVQHETNKIKFEMIDCGKGIPEEERQLIFN YYSGDNFKDNKKDSLGLGL
Sbjct  798  HAESHSEIKLHVQHETNKIKFEMIDCGKGIPEEERQLIFNPYYSGDNFKDNKKDSLGLGL  857

Query  841  ylvqlilKQHNSELEYQPNTPQGSIFYFYLTVNPIEMEGAMDENNIIGR  889
            YLVQLILKQHNSELEYQPNTPQGSIFYFYLTVNPIEMEGAMDENNIIGR
Sbjct  858  YLVQLILKQHNSELEYQPNTPQGSIFYFYLTVNPIEMEGAMDENNIIGR  906

7) SA2981_0071 in NC_017340


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score = 1326 bits (5033),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 876/877 (99%), Positives = 877/877 (100%), Gaps = 0/877 (0%)

Query  1    MYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEISTSSRKFG  60
            +YLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEISTSSRKFG
Sbjct  30   IYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEISTSSRKFG  89

Query  61   SHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVWTTLNIQH  120
            SHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVWTTLNIQH
Sbjct  90   SHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVWTTLNIQH  149

Query  121  IESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKKERLETAF  180
            IESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKKERLETAF
Sbjct  150  IESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKKERLETAF  209

Query  181  SNFFTYENltelreltlrtVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNERVIREAR  240
            SNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNERVIREAR
Sbjct  210  SNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNERVIREAR  269

Query  241  RAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDIAKALTDW  300
            RAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDIAKALTDW
Sbjct  270  RAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDIAKALTDW  329

Query  301  CDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKPTNTPKQA  360
            CDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKPTNTPKQA
Sbjct  330  CDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKPTNTPKQA  389

Query  361  QKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIWTQSYLIG  420
            QKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIWTQSYLIG
Sbjct  390  QKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIWTQSYLIG  449

Query  421  FFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQHSLTERQ  480
            FFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQHSLTERQ
Sbjct  450  FFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQHSLTERQ  509

Query  481  LYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAAsnsfgnrsi  540
            LYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASNSFGNRSI
Sbjct  510  LYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASNSFGNRSI  569

Query  541  sssDKTHDAETLSWVIENESRAGKLTDTFPGSKFLCIPIGTNPVKGVISIRFTDETYIDT  600
            SSSDKTHDAETLSWVIENESRAGKLTDTFPGSKFLCIPIGTNPVKGVISIRFTDETYIDT
Sbjct  570  SSSDKTHDAETLSWVIENESRAGKLTDTFPGSKFLCIPIGTNPVKGVISIRFTDETYIDT  629

Query  601  YDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRTPLTSIMGN  660
            YDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRTPLTSIMGN
Sbjct  630  YDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRTPLTSIMGN  689

Query  661  LDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQRTPYlveel  720
            LDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQRTPYLVEEL
Sbjct  690  LDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQRTPYLVEEL  749

Query  721  leefeeglIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAESHSEIKLHV  780
            LEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAESHSEIKLHV
Sbjct  750  LEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAESHSEIKLHV  809

Query  781  QHETNKIKFEMIDCGKGIPEEERQLIFNPYYSGDNFKDNKKDSlglglylvqlilKQHNS  840
            QHETNKIKFEMIDCGKGIPEEERQLIFNPYYSGDNFKDNKKDSLGLGLYLVQLILKQHNS
Sbjct  810  QHETNKIKFEMIDCGKGIPEEERQLIFNPYYSGDNFKDNKKDSLGLGLYLVQLILKQHNS  869

Query  841  ELEYQPNTPQGSIFYFYLTVNPIEMEGAMDENNIIGR  877
            ELEYQPNTPQGSIFYFYLTVNPIEMEGAMDENNIIGR
Sbjct  870  ELEYQPNTPQGSIFYFYLTVNPIEMEGAMDENNIIGR  906

8) kdpD in NC_009782


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score = 1326 bits (5033),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 876/877 (99%), Positives = 877/877 (100%), Gaps = 0/877 (0%)

Query  1    MYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEISTSSRKFG  60
            +YLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEISTSSRKFG
Sbjct  30   IYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEISTSSRKFG  89

Query  61   SHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVWTTLNIQH  120
            SHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVWTTLNIQH
Sbjct  90   SHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVWTTLNIQH  149

Query  121  IESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKKERLETAF  180
            IESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKKERLETAF
Sbjct  150  IESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKKERLETAF  209

Query  181  SNFFTYENltelreltlrtVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNERVIREAR  240
            SNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNERVIREAR
Sbjct  210  SNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNERVIREAR  269

Query  241  RAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDIAKALTDW  300
            RAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDIAKALTDW
Sbjct  270  RAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDIAKALTDW  329

Query  301  CDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKPTNTPKQA  360
            CDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKPTNTPKQA
Sbjct  330  CDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKPTNTPKQA  389

Query  361  QKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIWTQSYLIG  420
            QKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIWTQSYLIG
Sbjct  390  QKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIWTQSYLIG  449

Query  421  FFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQHSLTERQ  480
            FFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQHSLTERQ
Sbjct  450  FFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQHSLTERQ  509

Query  481  LYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAAsnsfgnrsi  540
            LYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASNSFGNRSI
Sbjct  510  LYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASNSFGNRSI  569

Query  541  sssDKTHDAETLSWVIENESRAGKLTDTFPGSKFLCIPIGTNPVKGVISIRFTDETYIDT  600
            SSSDKTHDAETLSWVIENESRAGKLTDTFPGSKFLCIPIGTNPVKGVISIRFTDETYIDT
Sbjct  570  SSSDKTHDAETLSWVIENESRAGKLTDTFPGSKFLCIPIGTNPVKGVISIRFTDETYIDT  629

Query  601  YDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRTPLTSIMGN  660
            YDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRTPLTSIMGN
Sbjct  630  YDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRTPLTSIMGN  689

Query  661  LDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQRTPYlveel  720
            LDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQRTPYLVEEL
Sbjct  690  LDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQRTPYLVEEL  749

Query  721  leefeeglIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAESHSEIKLHV  780
            LEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAESHSEIKLHV
Sbjct  750  LEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAESHSEIKLHV  809

Query  781  QHETNKIKFEMIDCGKGIPEEERQLIFNPYYSGDNFKDNKKDSlglglylvqlilKQHNS  840
            QHETNKIKFEMIDCGKGIPEEERQLIFNPYYSGDNFKDNKKDSLGLGLYLVQLILKQHNS
Sbjct  810  QHETNKIKFEMIDCGKGIPEEERQLIFNPYYSGDNFKDNKKDSLGLGLYLVQLILKQHNS  869

Query  841  ELEYQPNTPQGSIFYFYLTVNPIEMEGAMDENNIIGR  877
            ELEYQPNTPQGSIFYFYLTVNPIEMEGAMDENNIIGR
Sbjct  870  ELEYQPNTPQGSIFYFYLTVNPIEMEGAMDENNIIGR  906

9) kdpD in NC_002758


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score = 1326 bits (5033),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 876/877 (99%), Positives = 877/877 (100%), Gaps = 0/877 (0%)

Query  1    MYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEISTSSRKFG  60
            +YLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEISTSSRKFG
Sbjct  30   IYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEISTSSRKFG  89

Query  61   SHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVWTTLNIQH  120
            SHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVWTTLNIQH
Sbjct  90   SHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVWTTLNIQH  149

Query  121  IESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKKERLETAF  180
            IESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKKERLETAF
Sbjct  150  IESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKKERLETAF  209

Query  181  SNFFTYENltelreltlrtVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNERVIREAR  240
            SNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNERVIREAR
Sbjct  210  SNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNERVIREAR  269

Query  241  RAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDIAKALTDW  300
            RAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDIAKALTDW
Sbjct  270  RAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDIAKALTDW  329

Query  301  CDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKPTNTPKQA  360
            CDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKPTNTPKQA
Sbjct  330  CDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKPTNTPKQA  389

Query  361  QKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIWTQSYLIG  420
            QKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIWTQSYLIG
Sbjct  390  QKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIWTQSYLIG  449

Query  421  FFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQHSLTERQ  480
            FFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQHSLTERQ
Sbjct  450  FFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQHSLTERQ  509

Query  481  LYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAAsnsfgnrsi  540
            LYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASNSFGNRSI
Sbjct  510  LYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASNSFGNRSI  569

Query  541  sssDKTHDAETLSWVIENESRAGKLTDTFPGSKFLCIPIGTNPVKGVISIRFTDETYIDT  600
            SSSDKTHDAETLSWVIENESRAGKLTDTFPGSKFLCIPIGTNPVKGVISIRFTDETYIDT
Sbjct  570  SSSDKTHDAETLSWVIENESRAGKLTDTFPGSKFLCIPIGTNPVKGVISIRFTDETYIDT  629

Query  601  YDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRTPLTSIMGN  660
            YDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRTPLTSIMGN
Sbjct  630  YDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRTPLTSIMGN  689

Query  661  LDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQRTPYlveel  720
            LDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQRTPYLVEEL
Sbjct  690  LDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQRTPYLVEEL  749

Query  721  leefeeglIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAESHSEIKLHV  780
            LEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAESHSEIKLHV
Sbjct  750  LEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAESHSEIKLHV  809

Query  781  QHETNKIKFEMIDCGKGIPEEERQLIFNPYYSGDNFKDNKKDSlglglylvqlilKQHNS  840
            QHETNKIKFEMIDCGKGIPEEERQLIFNPYYSGDNFKDNKKDSLGLGLYLVQLILKQHNS
Sbjct  810  QHETNKIKFEMIDCGKGIPEEERQLIFNPYYSGDNFKDNKKDSLGLGLYLVQLILKQHNS  869

Query  841  ELEYQPNTPQGSIFYFYLTVNPIEMEGAMDENNIIGR  877
            ELEYQPNTPQGSIFYFYLTVNPIEMEGAMDENNIIGR
Sbjct  870  ELEYQPNTPQGSIFYFYLTVNPIEMEGAMDENNIIGR  906

10) kdpD in NC_002745


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score = 1326 bits (5033),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 876/877 (99%), Positives = 877/877 (100%), Gaps = 0/877 (0%)

Query  1    MYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEISTSSRKFG  60
            +YLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEISTSSRKFG
Sbjct  30   IYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEISTSSRKFG  89

Query  61   SHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVWTTLNIQH  120
            SHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVWTTLNIQH
Sbjct  90   SHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVWTTLNIQH  149

Query  121  IESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKKERLETAF  180
            IESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKKERLETAF
Sbjct  150  IESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKKERLETAF  209

Query  181  SNFFTYENltelreltlrtVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNERVIREAR  240
            SNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNERVIREAR
Sbjct  210  SNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNERVIREAR  269

Query  241  RAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDIAKALTDW  300
            RAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDIAKALTDW
Sbjct  270  RAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDIAKALTDW  329

Query  301  CDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKPTNTPKQA  360
            CDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKPTNTPKQA
Sbjct  330  CDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKPTNTPKQA  389

Query  361  QKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIWTQSYLIG  420
            QKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIWTQSYLIG
Sbjct  390  QKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIWTQSYLIG  449

Query  421  FFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQHSLTERQ  480
            FFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQHSLTERQ
Sbjct  450  FFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQHSLTERQ  509

Query  481  LYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAAsnsfgnrsi  540
            LYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASNSFGNRSI
Sbjct  510  LYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASNSFGNRSI  569

Query  541  sssDKTHDAETLSWVIENESRAGKLTDTFPGSKFLCIPIGTNPVKGVISIRFTDETYIDT  600
            SSSDKTHDAETLSWVIENESRAGKLTDTFPGSKFLCIPIGTNPVKGVISIRFTDETYIDT
Sbjct  570  SSSDKTHDAETLSWVIENESRAGKLTDTFPGSKFLCIPIGTNPVKGVISIRFTDETYIDT  629

Query  601  YDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRTPLTSIMGN  660
            YDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRTPLTSIMGN
Sbjct  630  YDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRTPLTSIMGN  689

Query  661  LDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQRTPYlveel  720
            LDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQRTPYLVEEL
Sbjct  690  LDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQRTPYLVEEL  749

Query  721  leefeeglIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAESHSEIKLHV  780
            LEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAESHSEIKLHV
Sbjct  750  LEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAESHSEIKLHV  809

Query  781  QHETNKIKFEMIDCGKGIPEEERQLIFNPYYSGDNFKDNKKDSlglglylvqlilKQHNS  840
            QHETNKIKFEMIDCGKGIPEEERQLIFNPYYSGDNFKDNKKDSLGLGLYLVQLILKQHNS
Sbjct  810  QHETNKIKFEMIDCGKGIPEEERQLIFNPYYSGDNFKDNKKDSLGLGLYLVQLILKQHNS  869

Query  841  ELEYQPNTPQGSIFYFYLTVNPIEMEGAMDENNIIGR  877
            ELEYQPNTPQGSIFYFYLTVNPIEMEGAMDENNIIGR
Sbjct  870  ELEYQPNTPQGSIFYFYLTVNPIEMEGAMDENNIIGR  906

11) SLGD_00057 in NC_013893


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score = 1091 bits (4138),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 706/884 (80%), Positives = 810/884 (92%), Gaps = 5/884 (0%)

Query  1    MESSYKKRGTLTIYLGYSPGVGKTYEMLSNGIDQYKEGVDVKIGYIEPHQRPETNALAKQ  60
            MES+YKKRG LTIYLGYSPGVGKTYEMLSNGIDQY+EG D+KIGYIEPHQRPETNAL +Q
Sbjct  18   MESTYKKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQ  77

Query  61   LPEITTSSHKFGSHMFQFINVERIIEAQPDIVLIDELAHTNISKNRHLKRYMDIEEILSH  120
            LPEI+TSS+KFGSH F++I+V +IIEA+PD+VLIDELAHTNISK+RHLKRY DIEEILSH
Sbjct  78   LPEISTSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSH  137

Query  121  GIDVWTTLNIQHIESLSGQIELMTGIQVTERVPDQFIMSADAFEVVDISPNMLIQRLKAG  180
            GIDVWTTLNIQHIESLSGQI LMTGIQVTERVPDQFI SADAFEVVDISPNMLIQRLKAG
Sbjct  138  GIDVWTTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAG  197

Query  181  KVYKKERLETAFSNFFSYENLTRLRELALRTVADIMSQKEQQCNTKHTDITPHIAVAVSG  240
            KVYKKERLETAFSNFF+YENLT LREL+LRTVADIMSQK QQ +TKHTDITPHIAVA+SG
Sbjct  198  KVYKKERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISG  257

Query  241  SIYNERVIREARRSAYKEHAKFTAIYIDTFETPSESKIQDHYVHKNLMLAKSLGAEIKVL  300
            SIYNERVIREARR+AYKEHAKFTA+YID FETPSES+ QDHYVHKNLMLAK+LGAEIKVL
Sbjct  258  SIYNERVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVL  317

Query  301  YAQDVAKALTDWCDSAFVTKLVLGQSENPKWKHYFKKSLIEEINHAPHYFKLEIVPIYYI  360
            YAQD+AKALTDWCD AFVTKLVLGQSE+P+WK+YFK+SLIE+INH PH FKLEIVPI YI
Sbjct  318  YAQDIAKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYI  377

Query  361  NSNKQERTQSMNKPSYQIALSVDIMKMLIIQTFCVLLGMWIYTIDKNESSAiilllffig  420
            +S+K   T    + S +  L+V+IMKML+IQT+CVLLG+W+Y +DK+ESSAIILL+FFIG
Sbjct  378  HSDKPTNTPKQAQKSSR--LTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIG  435

Query  421  iillSIWTQSYLIGFFTSILNVFIFNYFFTVPRFTLEMYRFEYPitfvisifasiftsai  480
            II+LSIWTQSYLIGFF+SILNVF+FNYFFTVPRFTLEMYRFEYPITF  SIFASIFTSAI
Sbjct  436  IIVLSIWTQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAI  495

Query  481  LKNLKYQHSLTERQLYRTDIMLQFNQSIKESYSIMKLLNIAGEQIHQLLHQNVTVFLves  540
            LKNLK QHSLTERQLYRT+IMLQFNQSIKESYSI +LLNIAG+QIHQLL+Q+VTVFL++S
Sbjct  496  LKNLKHQHSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQS  555

Query  541  kkvvksssFGHPSFKNTKNMEDVEDAETLTWVIENEHRAGRLTDTFPGSKYLCIPIGSNP  600
            KKV  S+SFG+ S+ ++   +  +DAETL+WVIENE RAG+LTDTFPGSK+LCIPIG+NP
Sbjct  556  KKVAASNSFGNRSISSS---DKTHDAETLSWVIENESRAGKLTDTFPGSKFLCIPIGTNP  612

Query  601  VKGIVSIQFDDKDYIDMYDNSILDSMLNDLMLAIENVYLLKQTRQSMLTAEREATRSNFL  660
            VKG++SI+F D  YID YDNSILDSMLND+ LAIENV LLKQTRQS+L AEREATRSNFL
Sbjct  613  VKGVISIRFTDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFL  672

Query  661  HSISHDIRTPLTSIIGNLDVLKFHSKSLDNAEKLKLLTASYKEAQYLYTLVTNILSLTKL  720
            HSISHDIRTPLTSI+GNLD+LK+H+  L++ ++  LLTASY EAQYL TLVTNILSLTKL
Sbjct  673  HSISHDIRTPLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKL  732

Query  721  ESSDIKVKRTAYLIEELLEEFEQGLIRRHQNQKVTIETEDTMAFVHIDSKLILQVLFNLV  780
            ESSDI+++RT+YL+EELLEEFE+GLIRRHQ + V IE ED  ++++IDSKLILQVLFNL+
Sbjct  733  ESSDIQIQRTPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLI  792

Query  781  DNALKHSGTTSEIKLCIHLQPSRVRFEMIDFGKGIPEEERHLIYKPYYSGDYFKDNKKDS  840
            DNALKH+ + SEIKL ++ + ++++FEMID GKGIPEEER+LI++PYYSGD FKDNKKDS
Sbjct  793  DNALKHAESHSEIKLHVQHETNKIKFEMIDCGKGIPEEERQLIFNPYYSGDNFKDNKKDS  852

Query  841  lglglylvqlilKQHDSQLEYQPNHPHGSIFYFYLDIDQIDMKG  884
            LGLGLYLVQLILKQH+S+LEYQPN P+GSIFYFYL ++ I+M G
Sbjct  853  LGLGLYLVQLILKQHNSELEYQPNTPQGSIFYFYLTVNPIEMEG  896

12) kdpD(SCCmec) in NC_017353


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score = 1091 bits (4138),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 706/884 (80%), Positives = 810/884 (92%), Gaps = 5/884 (0%)

Query  1    MESSYKKRGTLTIYLGYSPGVGKTYEMLSNGIDQYKEGVDVKIGYIEPHQRPETNALAKQ  60
            MES+YKKRG LTIYLGYSPGVGKTYEMLSNGIDQY+EG D+KIGYIEPHQRPETNAL +Q
Sbjct  18   MESTYKKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQ  77

Query  61   LPEITTSSHKFGSHMFQFINVERIIEAQPDIVLIDELAHTNISKNRHLKRYMDIEEILSH  120
            LPEI+TSS+KFGSH F++I+V +IIEA+PD+VLIDELAHTNISK+RHLKRY DIEEILSH
Sbjct  78   LPEISTSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSH  137

Query  121  GIDVWTTLNIQHIESLSGQIELMTGIQVTERVPDQFIMSADAFEVVDISPNMLIQRLKAG  180
            GIDVWTTLNIQHIESLSGQI LMTGIQVTERVPDQFI SADAFEVVDISPNMLIQRLKAG
Sbjct  138  GIDVWTTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAG  197

Query  181  KVYKKERLETAFSNFFSYENLTRLRELALRTVADIMSQKEQQCNTKHTDITPHIAVAVSG  240
            KVYKKERLETAFSNFF+YENLT LREL+LRTVADIMSQK QQ +TKHTDITPHIAVA+SG
Sbjct  198  KVYKKERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISG  257

Query  241  SIYNERVIREARRSAYKEHAKFTAIYIDTFETPSESKIQDHYVHKNLMLAKSLGAEIKVL  300
            SIYNERVIREARR+AYKEHAKFTA+YID FETPSES+ QDHYVHKNLMLAK+LGAEIKVL
Sbjct  258  SIYNERVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVL  317

Query  301  YAQDVAKALTDWCDSAFVTKLVLGQSENPKWKHYFKKSLIEEINHAPHYFKLEIVPIYYI  360
            YAQD+AKALTDWCD AFVTKLVLGQSE+P+WK+YFK+SLIE+INH PH FKLEIVPI YI
Sbjct  318  YAQDIAKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYI  377

Query  361  NSNKQERTQSMNKPSYQIALSVDIMKMLIIQTFCVLLGMWIYTIDKNESSAiilllffig  420
            +S+K   T    + S +  L+V+IMKML+IQT+CVLLG+W+Y +DK+ESSAIILL+FFIG
Sbjct  378  HSDKPTNTPKQAQKSSR--LTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIG  435

Query  421  iillSIWTQSYLIGFFTSILNVFIFNYFFTVPRFTLEMYRFEYPitfvisifasiftsai  480
            II+LSIWTQSYLIGFF+SILNVF+FNYFFTVPRFTLEMYRFEYPITF  SIFASIFTSAI
Sbjct  436  IIVLSIWTQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAI  495

Query  481  LKNLKYQHSLTERQLYRTDIMLQFNQSIKESYSIMKLLNIAGEQIHQLLHQNVTVFLves  540
            LKNLK QHSLTERQLYRT+IMLQFNQSIKESYSI +LLNIAG+QIHQLL+Q+VTVFL++S
Sbjct  496  LKNLKHQHSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQS  555

Query  541  kkvvksssFGHPSFKNTKNMEDVEDAETLTWVIENEHRAGRLTDTFPGSKYLCIPIGSNP  600
            KKV  S+SFG+ S+ ++   +  +DAETL+WVIENE RAG+LTDTFPGSK+LCIPIG+NP
Sbjct  556  KKVAASNSFGNRSISSS---DKTHDAETLSWVIENESRAGKLTDTFPGSKFLCIPIGTNP  612

Query  601  VKGIVSIQFDDKDYIDMYDNSILDSMLNDLMLAIENVYLLKQTRQSMLTAEREATRSNFL  660
            VKG++SI+F D  YID YDNSILDSMLND+ LAIENV LLKQTRQS+L AEREATRSNFL
Sbjct  613  VKGVISIRFTDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFL  672

Query  661  HSISHDIRTPLTSIIGNLDVLKFHSKSLDNAEKLKLLTASYKEAQYLYTLVTNILSLTKL  720
            HSISHDIRTPLTSI+GNLD+LK+H+  L++ ++  LLTASY EAQYL TLVTNILSLTKL
Sbjct  673  HSISHDIRTPLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKL  732

Query  721  ESSDIKVKRTAYLIEELLEEFEQGLIRRHQNQKVTIETEDTMAFVHIDSKLILQVLFNLV  780
            ESSDI+++RT+YL+EELLEEFE+GLIRRHQ + V IE ED  ++++IDSKLILQVLFNL+
Sbjct  733  ESSDIQIQRTPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLI  792

Query  781  DNALKHSGTTSEIKLCIHLQPSRVRFEMIDFGKGIPEEERHLIYKPYYSGDYFKDNKKDS  840
            DNALKH+ + SEIKL ++ + ++++FEMID GKGIPEEER+LI++PYYSGD FKDNKKDS
Sbjct  793  DNALKHAESHSEIKLHVQHETNKIKFEMIDCGKGIPEEERQLIFNPYYSGDNFKDNKKDS  852

Query  841  lglglylvqlilKQHDSQLEYQPNHPHGSIFYFYLDIDQIDMKG  884
            LGLGLYLVQLILKQH+S+LEYQPN P+GSIFYFYL ++ I+M G
Sbjct  853  LGLGLYLVQLILKQHNSELEYQPNTPQGSIFYFYLTVNPIEMEG  896

13) SAMSHR1132_19030 in NC_016941


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  836 bits (3165),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 513/871 (59%), Positives = 698/871 (81%), Gaps = 9/871 (1%)

Query  11   KTRGTLTIYIGYSPGVGKTFEMLSNAIDLYQNGADIKIGYIEPHQRRETEALAKKLPEIA  70
            K RG LTIY+GYSPGVGKT+EMLSN+ID YQ+GADIKIGYIEPHQR ET+AL ++LPEI+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  71   TNVTKHGSHSFQDLNIDRILEEAPTIVLIDELAHTNISRERHEKRYMDIEEILNHGIDVH  130
            T+  K GSH+F+ +++ +I+E  P +VLIDELAHTNIS+ERH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  131  TTLNIQHIESLSSQIEMMTGVQVKERVPDYFIIGADVLEVVDISPNQLIKRLKAGKVYKK  190
            TTLNIQHIESLS+QI +MTG+QV ERVPD FI +AD +EVVDISPN LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  191  DRLEVAFSNFFTYEHLSELRTLTLRTVADLMSDKEKLRHNNKAIMTPHIAVAISGSIYNE  250
            +RLE AFSNFFTYE+L+ELR LTLRTVAD+MS+K +    + + +TPHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  251  AVIKEAFHIAQKEHAKFTAIYIDIFEKNRQHHDSQKHVHRHLMLAKSLGAKVKVVYSQSV  310
             VI+EA + A KEHAKFTA+YID+FE   + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  311  ASGLDEWCKNQDVTKLIIGQHIRNKWVDFFNTPLIDRLMSFDHHYKIEIVPIKQIPVALN  370
            A +L +WC    VTKL++GQ  + +W D+F+ +LI+++    HH+K+EIVPI  I     
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  371  TNKIPYRPKSKRFAKDMLKMLLIQMICILMGLWVYELDKHESSTiilmlfligiilVSIW  430
            TN      KS R++ +++KML+IQ IC+L+G+WVY+LDK ESS+IIL++F+IGII++SIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  431  TQSYMVGFIAAILNVFVFNYFFTEPRFTFEVYRFDYPITF----IVSILTSALLKEIKFQ  486
            TQSY++GF+A+ILNVFVFNYFFT PRFT+E+YRF+YPITF    + SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  487  YSITKKQLYRTDLLLQFNDSIKQTYTVKDLLVNAGHQIHQLLQQPITIYVIDDSKVSKTI  546
             S+T +QLYRT+++LQFN+SIK++Y++  LL  AG+QIHQLL+Q +T+++I+  KV+ + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  547  PLQQD--ADYKNQHYEQVLSWVIKNERQAGATTDTFPGINQWLIPIGASPVKGVVAINCQ  604
            ++ +   +   + H  + LSWVI NE +AG  TDTFPG +   IPIG++PVKGV++I   
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPGSKFLCIPIGTNPVKGVISIRFT  622

Query  605  QSQTINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRTP  664
            +   I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRTP
Sbjct  623  DETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRTP  682

Query  665  LTTIMGNLDILMTHNKLMPFNEQQQLLLNSYQESQYLYHLVTNILSLTRLQSSNVHIKLQ  724
            LT+IMGNLD+L  HN  +  ++Q +LL  SY E+QYL  LVTNILSLT+L+SS+++I+  
Sbjct  683  LTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQRT  742

Query  725  PYLVSELVEEIDTILKRRHLKDDVTIALTEDLHFVRIDSKLILQAIFNLIENAIKHSSSN  784
            PYLV EL+EE++  L RRH  ++V I   +D  ++ IDSKLILQ +FNLI+NA+KH+ S+
Sbjct  743  PYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAESH  802

Query  785  TTIKLCIHRPNDKQVQFSVIDEGPGISAQEQQKIFEPFYTGANKHFKDNQKESMGLGLYL  844
            + IKL +++  +K ++F +ID G GI+ +E+Q IF+P+Y+G N  FKDN+K+S+GLGLYL
Sbjct  803  SEIKLHVQHETNK-IKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLYL  859

Query  845  VQTILHKHHSILQYKTNQPHGSIFYFNIDID  875
            VQ IL +H+S L+Y+ N P+GSIFYF + ++
Sbjct  860  VQLILKQHNSELEYQPNTPQGSIFYFYLTVN  890

14) SAOV_2120 in NC_017337


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  816 bits (3089),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 510/867 (59%), Positives = 705/867 (82%), Gaps = 7/867 (0%)

Query  11   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIEPHQRDETNALAEQLPKIA  70
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGYIEPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  71   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  130
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  131  TTLNIQHIESLSSQIELMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  190
            TTLNIQHIESLS+QI LMTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  191  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  250
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  251  AVIKEAFHIAQKEHAKFTAIYIDVFEKNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  310
             VI+EA + A KEHAKFTA+YIDVFE   + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  311  ALGLDEWCKNQDVTKLIIGQHIRNKWRDFFNKPLIDHLMSFEHSYKIEIVPIKQIPVELK  370
            A +L +WC    VTKL++GQ  + +W+D+F+++LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  371  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  430
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  431  TRSYIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  490
            T+SY+IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  491  YSITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  550
             S+T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  551  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  607
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  608  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  667
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  668  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKV  727
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  728  QPYLVSELVEEIDMILERRHLKKRITVSSSVDLQFIHIDSKLILQALFNLIENAVKHTST  787
             PYLV EL+EE++  L RRH  +++ + +  D  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  788  DTKINLSIRYASDEQIEFAVIDEGSGISLEEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  847
            ++ I+L ++  ++ +I F +ID G GI+ EE+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHETN-KIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  848  LVQTILHKHQSNLQYKPNQPHGSIFYF  874
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

15) M013TW_2037 in NC_016928


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  815 bits (3084),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 510/867 (59%), Positives = 705/867 (82%), Gaps = 7/867 (0%)

Query  11   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIEPHQRDETNALAEQLPKIA  70
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGYIEPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  71   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  130
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  131  TTLNIQHIESLSSQIELMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  190
            TTLNIQHIESLS+QI LMTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  191  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  250
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  251  AVIKEAFHIAQKEHAKFTAIYIDVFEKNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  310
             VI+EA + A KEHAKFTA+YIDVFE   + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  311  ALGLDEWCKNQDVTKLIIGQHIRNKWRDFFNKPLIDHLMSFEHSYKIEIVPIKQIPVELK  370
            A +L +WC    VTKL++GQ  + +W+D+F+++LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  371  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  430
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  431  TRSYIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  490
            T+SY+IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  491  YSITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  550
             S+T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  551  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  607
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  608  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  667
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  668  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  727
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  728  QPYLVSELVEEIDMILERRHLKKRITVSSSVDLQFIHIDSKLILQALFNLIENAVKHTST  787
             PYLV EL+EE++  L RRH  +++ + +  D  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  788  DTKINLSIRYASDEQIEFAVIDEGPGISLEEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  847
            ++ I+L ++  ++ +I F +ID G GI+ EE+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHETN-KIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  848  LVQTILHKHQSNLQYNPNQPHGSIFYF  874
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

16) kdpD in NC_022443


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  815 bits (3086),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 510/867 (59%), Positives = 705/867 (82%), Gaps = 7/867 (0%)

Query  11   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIEPHQRDETNALAEQLPKIA  70
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGYIEPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  71   TNFTKHGSHHFQYLDVDRIIEESPAIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  130
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  131  TTLNIQHIESLSSQIELMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  190
            TTLNIQHIESLS+QI LMTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  191  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  250
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  251  AVIKEAFHIAQKEHAKFTAIYIDVFEKNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  310
             VI+EA + A KEHAKFTA+YIDVFE   + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  311  ALGLDEWCKNQDVTKLIIGQHIRNKWRDFFNKPLIDHLMSFEHSYKIEIVPIKQIPVELK  370
            A +L +WC    VTKL++GQ  + +W+D+F+++LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  371  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  430
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  431  TRSYIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  490
            T+SY+IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  491  YSITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  550
             S+T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  551  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  607
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  608  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  667
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  668  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  727
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  728  QPYLVSELVEEIDMILERRHLKKRITVSSSVDLQFIHIDSKLILQALFNLIENAVKHTST  787
             PYLV EL+EE++  L RRH  +++ + +  D  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  788  DTKINLSIRYASDEQIEFAVIDEGPGISLEEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  847
            ++ I+L ++  ++ +I F +ID G GI+ EE+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHETN-KIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  848  LVQTILHKHQSNLQYNPNQPHGSIFYF  874
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

17) kdpD in NC_022442


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  815 bits (3084),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 510/867 (59%), Positives = 705/867 (82%), Gaps = 7/867 (0%)

Query  11   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIEPHQRDETNALAEQLPKIA  70
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGYIEPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  71   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  130
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  131  TTLNIQHIESLSSQIELMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  190
            TTLNIQHIESLS+QI LMTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  191  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  250
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  251  AVIKEAFHIAQKEHAKFTAIYIDVFEKNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  310
             VI+EA + A KEHAKFTA+YIDVFE   + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  311  ALGLDEWCKNQDVTKLIIGQHIRNKWRDFFNKPLIDHLMSFEHSYKIEIVPIKQIPVELK  370
            A +L +WC    VTKL++GQ  + +W+D+F+++LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  371  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  430
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  431  TRSYIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  490
            T+SY+IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  491  YSITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  550
             S+T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  551  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  607
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  608  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  667
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  668  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  727
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  728  QPYLVSELVEEIDMILERRHLKKRITVSSSVDLQFIHIDSKLILQALFNLIENAVKHTST  787
             PYLV EL+EE++  L RRH  +++ + +  D  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  788  DTKINLSIRYASDEQIEFAVIDEGPGISLEEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  847
            ++ I+L ++  ++ +I F +ID G GI+ EE+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHETN-KIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  848  LVQTILHKHQSNLQYNPNQPHGSIFYF  874
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

18) MS7_2095 in NC_017351


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  813 bits (3077),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 509/867 (59%), Positives = 704/867 (82%), Gaps = 7/867 (0%)

Query  11   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIEPHQRDETNALAEQLPKIT  70
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGYIEPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  71   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  130
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  131  TTLNIQHIESLSSQIELMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  190
            TTLNIQHIESLS+QI LMTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  191  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  250
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  251  AVIKEAFHIAQKEHAKFTAIYIDVFEKNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  310
             VI+EA + A KEHAKFTA+YIDVFE   + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  311  ALGLDEWCKNQDVTKLIIGQHIRNKWRDFFNTPLIDHLMSFEHSYKVEIVPIKQIPVELK  370
            A +L +WC    VTKL++GQ  + +W+D+F+ +LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  371  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  430
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  431  TRSFIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  490
            T+S++IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  491  YSITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  550
             S+T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  551  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  607
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  608  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  667
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  668  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  727
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  728  QPYLVSELVEEIDMILERRHLKKRITVSSSVDLQFIHIDSKLILQALFNLIENAVKHTST  787
             PYLV EL+EE++  L RRH  +++ + +  D  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  788  DTKINLSIRYASDEQIEFAVIDEGPGISLEEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  847
            ++ I+L ++  ++ +I F +ID G GI+ EE+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHETN-KIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  848  LVQTILHKHQSNLQYKPNQPHGSIFYF  874
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

19) kdpD in NC_017763


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  813 bits (3077),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 510/867 (59%), Positives = 703/867 (82%), Gaps = 7/867 (0%)

Query  11   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIEPHQRDETNALAEQLPKIA  70
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGYIEPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  71   TNFTKHGSHHFQYLDVDRIIKESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  130
            T+  K GSH F+Y+DV +II  +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  131  TTLNIQHIESLSSQIELMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  190
            TTLNIQHIESLS+QI LMTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  191  DRLDVAFSNFFTYTHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  250
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  251  AVIKEAFHIAQKEHAKFTAIYIDVFEKNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  310
             VI+EA + A KEHAKFTA+YIDVFE   + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  311  ALGLDEWCKNQDVTKLIIGQHIRNKWRDFFNTPLIDHLMSFEHSYKIEIVPIKQIPVELK  370
            A +L +WC    VTKL++GQ  + +W+D+F+ +LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  371  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  430
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  431  TRSYIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  490
            T+SY+IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  491  YSITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITVYVINQSKVIKTI  550
             S+T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +TV++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  551  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  607
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  608  QSSQVINPYDASILESMLNELSLAVENVSLLKQTRESMLQAERQLTHSNFLRSISHDIRT  667
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  668  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  727
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  728  QPYLVSELVEEIDMILERRHLKKRITVSSSVDLQFIHIDSKLILQALFNLIENAVKHTST  787
             PYLV EL+EE++  L RRH  +++ + +  D  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  788  DTKINLSIRYASDEQIEFAVIDEGPGISLEEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  847
            ++ I+L ++  ++ +I F +ID G GI+ EE+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHETN-KIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  848  LVQTILHKHQSNLQYKPNQPHGSIFYF  874
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

20) kdpD in NC_017349


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  813 bits (3077),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 510/867 (59%), Positives = 704/867 (82%), Gaps = 7/867 (0%)

Query  11   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIESHQRDETNALAEQLPKIA  70
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGYIE+HQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  71   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  130
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  131  TTLNIQHIESLSSQIELMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  190
            TTLNIQHIESLS+QI LMTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  191  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  250
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  251  AVIKEAFHIAQKEHAKFTAIYIDVFEKNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  310
             VI+EA + A KEHAKFTA+YIDVFE   + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  311  ALGLDEWCKNQDVTKLIIGQHIRNKWRDFFNKPLIDHLMSFEHSYKIEIVPIKQIPVELK  370
            A +L +WC    VTKL++GQ  + +W+D+F+++LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  371  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  430
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  431  TRSYIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  490
            T+SY+IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  491  YSITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  550
             S+T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  551  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  607
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  608  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  667
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  668  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKV  727
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  728  QPYLVSELVEEIDMILERRHLKKRITVSSSIDLQFIHIDSKLILQALFNLIENAVKHTSI  787
             PYLV EL+EE++  L RRH  +++ + +  D  +I+IDSKLILQ LFNLI+NA+KH+  
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  788  DTKINLSIRYASDKQIEFAVIDEGPGISLEEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  847
            ++ I+L ++  ++K I F +ID G GI+ EE+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHETNK-IKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  848  LVQTILHKHQSNLQYKPNQPHGSIFYF  874
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

21) SAS1983 in NC_002953


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  813 bits (3079),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 510/867 (59%), Positives = 704/867 (82%), Gaps = 7/867 (0%)

Query  11   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIEPHQRDETNALAEQLPKIT  70
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGYIEPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  71   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  130
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  131  TTLNIQHIESLSSQIELMTGIHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  190
            TTLNIQHIESLS+QI LMTGI+V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  191  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  250
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  251  AVIKEAFHIAQKEHAKFTAIYIDVFEKNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  310
             VI+EA + A KEHAKFTA+YIDVFE   + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  311  ALGLDEWCKNQDVTKLIIGQHIRNKWRDFFNTPLIDHLMSFEHSYKVEIVPIKQIPVELK  370
            A +L +WC    VTKL++GQ  + +W+D+F+ +LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  371  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  430
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  431  TRSFIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  490
            T+S++IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  491  YSITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  550
             S+T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  551  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  607
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  608  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  667
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  668  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  727
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  728  QPYLVSELVEEIDMILERRHLKKRITVSSSVDLQFIHIDSKLILQALFNLIENAVKHTST  787
             PYLV EL+EE++  L RRH  +++ + +  D  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  788  DTKINLSIRYASDEQIEFAVIDEGPGISLEEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  847
            ++ I+L ++  ++ +I F +ID G GI+ EE+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHETN-KIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  848  LVQTILHKHQSNLQYKPNQPHGSIFYF  874
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

22) kdpD in NC_003923


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  813 bits (3079),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 510/867 (59%), Positives = 704/867 (82%), Gaps = 7/867 (0%)

Query  11   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIEPHQRDETNALAEQLPKIT  70
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGYIEPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  71   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  130
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  131  TTLNIQHIESLSSQIELMTGIHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  190
            TTLNIQHIESLS+QI LMTGI+V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  191  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  250
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  251  AVIKEAFHIAQKEHAKFTAIYIDVFEKNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  310
             VI+EA + A KEHAKFTA+YIDVFE   + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  311  ALGLDEWCKNQDVTKLIIGQHIRNKWRDFFNTPLIDHLMSFEHSYKVEIVPIKQIPVELK  370
            A +L +WC    VTKL++GQ  + +W+D+F+ +LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  371  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  430
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  431  TRSFIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  490
            T+S++IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  491  YSITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  550
             S+T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  551  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  607
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  608  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  667
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  668  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  727
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  728  QPYLVSELVEEIDMILERRHLKKRITVSSSVDLQFIHIDSKLILQALFNLIENAVKHTST  787
             PYLV EL+EE++  L RRH  +++ + +  D  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  788  DTKINLSIRYASDEQIEFAVIDEGPGISLEEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  847
            ++ I+L ++  ++ +I F +ID G GI+ EE+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHETN-KIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  848  LVQTILHKHQSNLQYKPNQPHGSIFYF  874
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

23) kdpD in NC_002951


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  812 bits (3073),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 508/867 (59%), Positives = 704/867 (82%), Gaps = 7/867 (0%)

Query  11   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIEPHQRDETNALAEQLPKIT  70
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGYIEPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  71   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  130
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  131  TTLNIQHIESLSSQIELMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  190
            TTLNIQHIESLS+QI LMTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  191  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  250
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  251  AVIKEAFHIAQKEHAKFTAIYIDVFEKNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  310
             VI+EA + A KEHAKFTA+YIDVFE   + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  311  ALGLDEWCKNQDVTKLIIGQHIRNKWRDFFNTPLIDHLMSFEHSYKIEIVPIKQIPVELK  370
            A +L +WC    VTKL++GQ  + +W+D+F+ +LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  371  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  430
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  431  TRSFIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  490
            T+S++IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  491  YSITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  550
             S+T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  551  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  607
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  608  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  667
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  668  PLTTIMGNLDILVSHSKDMSVIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  727
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  728  QPYLVSELVEEIDMILERRHLKKRITVSSSVNLQFIHIDSKLILQALFNLIENAVKHTST  787
             PYLV EL+EE++  L RRH  +++ + +  +  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  788  DTKINLSIRYASYEQIEFAVIDEGPGISLEEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  847
            ++ I+L ++  + ++I F +ID G GI+ EE+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHET-NKIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  848  LVQTILHKHQSNLQYKPNQPHGSIFYF  874
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

24) kdpD in NC_009641


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  812 bits (3073),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 508/867 (59%), Positives = 704/867 (82%), Gaps = 7/867 (0%)

Query  11   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIEPHQRDETNALAEQLPKIT  70
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGYIEPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  71   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  130
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  131  TTLNIQHIESLSSQIELMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  190
            TTLNIQHIESLS+QI LMTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  191  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  250
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  251  AVIKEAFHIAQKEHAKFTAIYIDVFEKNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  310
             VI+EA + A KEHAKFTA+YIDVFE   + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  311  ALGLDEWCKNQDVTKLIIGQHIRNKWRDFFNTPLIDHLMSFEHSYKIEIVPIKQIPVELK  370
            A +L +WC    VTKL++GQ  + +W+D+F+ +LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  371  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  430
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  431  TRSFIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  490
            T+S++IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  491  YSITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  550
             S+T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  551  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  607
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  608  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  667
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  668  PLTTIMGNLDILVSHSKDMSVIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  727
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  728  QPYLVSELVEEIDMILERRHLKKRITVSSSVNLQFIHIDSKLILQALFNLIENAVKHTST  787
             PYLV EL+EE++  L RRH  +++ + +  +  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  788  DTKINLSIRYASYEQIEFAVIDEGPGISLEEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  847
            ++ I+L ++  + ++I F +ID G GI+ EE+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHET-NKIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  848  LVQTILHKHQSNLQYKPNQPHGSIFYF  874
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

25) kdpD in NC_017340


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  811 bits (3070),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 508/867 (59%), Positives = 704/867 (82%), Gaps = 7/867 (0%)

Query  11   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIEPHQRDETNALAEQLPKIT  70
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGYIEPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  71   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  130
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  131  TTLNIQHIESLSSQIELMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  190
            TTLNIQHIESLS+QI LMTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  191  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  250
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  251  AVIKEAFHIAQKEHAKFTAIYIDVFEKNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  310
             VI+EA + A KEHAKFTA+YIDVFE   + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  311  ALGLDEWCKNQDVTKLIIGQHIRNKWRDFFNTPLIDHLMSFEHSYKIEIVPIKQIPVELK  370
            A +L +WC    VTKL++GQ  + +W+D+F+ +LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  371  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  430
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  431  TRSFIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  490
            T+S++IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  491  YSITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  550
             S+T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  551  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  607
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  608  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  667
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  668  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  727
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  728  QPYLVSELVEEIDMILERRHLKKRITVSSSVNLQFIHIDSKLILQALFNLIENAVKHTST  787
             PYLV EL+EE++  L RRH  +++ + +  +  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  788  DTKINLSIRYASYEQIEFAVIDEGPGISLEEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  847
            ++ I+L ++  + ++I F +ID G GI+ EE+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHET-NKIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  848  LVQTILHKHQSNLQYKPNQPHGSIFYF  874
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

26) kdpD in NC_021670


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  811 bits (3070),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 508/867 (59%), Positives = 704/867 (82%), Gaps = 7/867 (0%)

Query  11   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIEPHQRDETNALAEQLPKIT  70
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGYIEPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  71   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  130
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  131  TTLNIQHIESLSSQIELMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  190
            TTLNIQHIESLS+QI LMTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  191  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  250
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  251  AVIKEAFHIAQKEHAKFTAIYIDVFEKNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  310
             VI+EA + A KEHAKFTA+YIDVFE   + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  311  ALGLDEWCKNQDVTKLIIGQHIRNKWRDFFNTPLIDHLMSFEHSYKIEIVPIKQIPVELK  370
            A +L +WC    VTKL++GQ  + +W+D+F+ +LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  371  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  430
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  431  TRSFIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  490
            T+S++IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  491  YSITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  550
             S+T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  551  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  607
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  608  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  667
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  668  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  727
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  728  QPYLVSELVEEIDMILERRHLKKRITVSSSVNLQFIHIDSKLILQALFNLIENAVKHTST  787
             PYLV EL+EE++  L RRH  +++ + +  +  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  788  DTKINLSIRYASYEQIEFAVIDEGPGISLEEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  847
            ++ I+L ++  + ++I F +ID G GI+ EE+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHET-NKIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  848  LVQTILHKHQSNLQYKPNQPHGSIFYF  874
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

27) ECTR2_1934 in NC_017343


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  811 bits (3070),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 508/867 (59%), Positives = 704/867 (82%), Gaps = 7/867 (0%)

Query  11   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIEPHQRDETNALAEQLPKIT  70
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGYIEPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  71   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  130
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  131  TTLNIQHIESLSSQIELMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  190
            TTLNIQHIESLS+QI LMTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  191  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  250
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  251  AVIKEAFHIAQKEHAKFTAIYIDVFEKNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  310
             VI+EA + A KEHAKFTA+YIDVFE   + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  311  ALGLDEWCKNQDVTKLIIGQHIRNKWRDFFNTPLIDHLMSFEHSYKIEIVPIKQIPVELK  370
            A +L +WC    VTKL++GQ  + +W+D+F+ +LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  371  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  430
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  431  TRSFIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  490
            T+S++IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  491  YSITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  550
             S+T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  551  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  607
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  608  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  667
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  668  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  727
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  728  QPYLVSELVEEIDMILERRHLKKRITVSSSVNLQFIHIDSKLILQALFNLIENAVKHTST  787
             PYLV EL+EE++  L RRH  +++ + +  +  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  788  DTKINLSIRYASYEQIEFAVIDEGPGISLEEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  847
            ++ I+L ++  + ++I F +ID G GI+ EE+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHET-NKIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  848  LVQTILHKHQSNLQYKPNQPHGSIFYF  874
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

28) kdpD in NC_013450


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  811 bits (3070),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 508/867 (59%), Positives = 704/867 (82%), Gaps = 7/867 (0%)

Query  11   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIEPHQRDETNALAEQLPKIT  70
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGYIEPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  71   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  130
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  131  TTLNIQHIESLSSQIELMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  190
            TTLNIQHIESLS+QI LMTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  191  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  250
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  251  AVIKEAFHIAQKEHAKFTAIYIDVFEKNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  310
             VI+EA + A KEHAKFTA+YIDVFE   + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  311  ALGLDEWCKNQDVTKLIIGQHIRNKWRDFFNTPLIDHLMSFEHSYKIEIVPIKQIPVELK  370
            A +L +WC    VTKL++GQ  + +W+D+F+ +LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  371  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  430
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  431  TRSFIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  490
            T+S++IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  491  YSITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  550
             S+T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  551  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  607
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  608  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  667
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  668  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  727
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  728  QPYLVSELVEEIDMILERRHLKKRITVSSSVNLQFIHIDSKLILQALFNLIENAVKHTST  787
             PYLV EL+EE++  L RRH  +++ + +  +  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  788  DTKINLSIRYASYEQIEFAVIDEGPGISLEEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  847
            ++ I+L ++  + ++I F +ID G GI+ EE+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHET-NKIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  848  LVQTILHKHQSNLQYKPNQPHGSIFYF  874
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

29) SaurJH1_2153 in NC_009632


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  811 bits (3070),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 508/867 (59%), Positives = 704/867 (82%), Gaps = 7/867 (0%)

Query  11   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIEPHQRDETNALAEQLPKIT  70
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGYIEPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  71   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  130
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  131  TTLNIQHIESLSSQIELMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  190
            TTLNIQHIESLS+QI LMTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  191  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  250
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  251  AVIKEAFHIAQKEHAKFTAIYIDVFEKNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  310
             VI+EA + A KEHAKFTA+YIDVFE   + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  311  ALGLDEWCKNQDVTKLIIGQHIRNKWRDFFNTPLIDHLMSFEHSYKIEIVPIKQIPVELK  370
            A +L +WC    VTKL++GQ  + +W+D+F+ +LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  371  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  430
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  431  TRSFIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  490
            T+S++IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  491  YSITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  550
             S+T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  551  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  607
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  608  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  667
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  668  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  727
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  728  QPYLVSELVEEIDMILERRHLKKRITVSSSVNLQFIHIDSKLILQALFNLIENAVKHTST  787
             PYLV EL+EE++  L RRH  +++ + +  +  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  788  DTKINLSIRYASYEQIEFAVIDEGPGISLEEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  847
            ++ I+L ++  + ++I F +ID G GI+ EE+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHET-NKIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  848  LVQTILHKHQSNLQYKPNQPHGSIFYF  874
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

30) SaurJH9_2115 in NC_009487


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  811 bits (3070),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 508/867 (59%), Positives = 704/867 (82%), Gaps = 7/867 (0%)

Query  11   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIEPHQRDETNALAEQLPKIT  70
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGYIEPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  71   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  130
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  131  TTLNIQHIESLSSQIELMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  190
            TTLNIQHIESLS+QI LMTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  191  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  250
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  251  AVIKEAFHIAQKEHAKFTAIYIDVFEKNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  310
             VI+EA + A KEHAKFTA+YIDVFE   + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  311  ALGLDEWCKNQDVTKLIIGQHIRNKWRDFFNTPLIDHLMSFEHSYKIEIVPIKQIPVELK  370
            A +L +WC    VTKL++GQ  + +W+D+F+ +LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  371  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  430
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  431  TRSFIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  490
            T+S++IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  491  YSITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  550
             S+T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  551  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  607
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  608  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  667
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  668  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  727
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  728  QPYLVSELVEEIDMILERRHLKKRITVSSSVNLQFIHIDSKLILQALFNLIENAVKHTST  787
             PYLV EL+EE++  L RRH  +++ + +  +  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  788  DTKINLSIRYASYEQIEFAVIDEGPGISLEEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  847
            ++ I+L ++  + ++I F +ID G GI+ EE+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHET-NKIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  848  LVQTILHKHQSNLQYKPNQPHGSIFYF  874
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

31) kdpD in NC_017341


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  811 bits (3070),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 508/867 (59%), Positives = 704/867 (82%), Gaps = 7/867 (0%)

Query  11   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIEPHQRDETNALAEQLPKIT  70
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGYIEPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  71   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  130
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  131  TTLNIQHIESLSSQIELMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  190
            TTLNIQHIESLS+QI LMTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  191  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  250
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  251  AVIKEAFHIAQKEHAKFTAIYIDVFEKNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  310
             VI+EA + A KEHAKFTA+YIDVFE   + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  311  ALGLDEWCKNQDVTKLIIGQHIRNKWRDFFNTPLIDHLMSFEHSYKIEIVPIKQIPVELK  370
            A +L +WC    VTKL++GQ  + +W+D+F+ +LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  371  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  430
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  431  TRSFIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  490
            T+S++IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  491  YSITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  550
             S+T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  551  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  607
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  608  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  667
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  668  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  727
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  728  QPYLVSELVEEIDMILERRHLKKRITVSSSVNLQFIHIDSKLILQALFNLIENAVKHTST  787
             PYLV EL+EE++  L RRH  +++ + +  +  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  788  DTKINLSIRYASYEQIEFAVIDEGPGISLEEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  847
            ++ I+L ++  + ++I F +ID G GI+ EE+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHET-NKIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  848  LVQTILHKHQSNLQYKPNQPHGSIFYF  874
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

32) BN843_21160 in NC_021059


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  811 bits (3070),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 508/867 (59%), Positives = 704/867 (82%), Gaps = 7/867 (0%)

Query  11   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIEPHQRDETNALAEQLPKIT  70
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGYIEPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  71   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  130
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  131  TTLNIQHIESLSSQIELMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  190
            TTLNIQHIESLS+QI LMTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  191  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  250
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  251  AVIKEAFHIAQKEHAKFTAIYIDVFEKNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  310
             VI+EA + A KEHAKFTA+YIDVFE   + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  311  ALGLDEWCKNQDVTKLIIGQHIRNKWRDFFNTPLIDHLMSFEHSYKIEIVPIKQIPVELK  370
            A +L +WC    VTKL++GQ  + +W+D+F+ +LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  371  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  430
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  431  TRSFIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  490
            T+S++IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  491  YSITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  550
             S+T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  551  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  607
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  608  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  667
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  668  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  727
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  728  QPYLVSELVEEIDMILERRHLKKRITVSSSVNLQFIHIDSKLILQALFNLIENAVKHTST  787
             PYLV EL+EE++  L RRH  +++ + +  +  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  788  DTKINLSIRYASYEQIEFAVIDEGPGISLEEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  847
            ++ I+L ++  + ++I F +ID G GI+ EE+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHET-NKIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  848  LVQTILHKHQSNLQYKPNQPHGSIFYF  874
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

33) kdpD in NC_009782


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  811 bits (3070),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 508/867 (59%), Positives = 704/867 (82%), Gaps = 7/867 (0%)

Query  11   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIEPHQRDETNALAEQLPKIT  70
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGYIEPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  71   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  130
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  131  TTLNIQHIESLSSQIELMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  190
            TTLNIQHIESLS+QI LMTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  191  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  250
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  251  AVIKEAFHIAQKEHAKFTAIYIDVFEKNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  310
             VI+EA + A KEHAKFTA+YIDVFE   + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  311  ALGLDEWCKNQDVTKLIIGQHIRNKWRDFFNTPLIDHLMSFEHSYKIEIVPIKQIPVELK  370
            A +L +WC    VTKL++GQ  + +W+D+F+ +LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  371  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  430
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  431  TRSFIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  490
            T+S++IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  491  YSITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  550
             S+T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  551  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  607
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  608  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  667
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  668  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  727
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  728  QPYLVSELVEEIDMILERRHLKKRITVSSSVNLQFIHIDSKLILQALFNLIENAVKHTST  787
             PYLV EL+EE++  L RRH  +++ + +  +  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  788  DTKINLSIRYASYEQIEFAVIDEGPGISLEEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  847
            ++ I+L ++  + ++I F +ID G GI+ EE+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHET-NKIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  848  LVQTILHKHQSNLQYKPNQPHGSIFYF  874
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

34) kdpD in NC_002758


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  811 bits (3070),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 508/867 (59%), Positives = 704/867 (82%), Gaps = 7/867 (0%)

Query  11   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIEPHQRDETNALAEQLPKIT  70
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGYIEPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  71   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  130
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  131  TTLNIQHIESLSSQIELMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  190
            TTLNIQHIESLS+QI LMTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  191  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  250
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  251  AVIKEAFHIAQKEHAKFTAIYIDVFEKNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  310
             VI+EA + A KEHAKFTA+YIDVFE   + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  311  ALGLDEWCKNQDVTKLIIGQHIRNKWRDFFNTPLIDHLMSFEHSYKIEIVPIKQIPVELK  370
            A +L +WC    VTKL++GQ  + +W+D+F+ +LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  371  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  430
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  431  TRSFIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  490
            T+S++IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  491  YSITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  550
             S+T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  551  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  607
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  608  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  667
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  668  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  727
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  728  QPYLVSELVEEIDMILERRHLKKRITVSSSVNLQFIHIDSKLILQALFNLIENAVKHTST  787
             PYLV EL+EE++  L RRH  +++ + +  +  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  788  DTKINLSIRYASYEQIEFAVIDEGPGISLEEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  847
            ++ I+L ++  + ++I F +ID G GI+ EE+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHET-NKIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  848  LVQTILHKHQSNLQYKPNQPHGSIFYF  874
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

35) kdpD in NC_002745


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  811 bits (3070),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 508/867 (59%), Positives = 704/867 (82%), Gaps = 7/867 (0%)

Query  11   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIEPHQRDETNALAEQLPKIT  70
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGYIEPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  71   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  130
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  131  TTLNIQHIESLSSQIELMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  190
            TTLNIQHIESLS+QI LMTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  191  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  250
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  251  AVIKEAFHIAQKEHAKFTAIYIDVFEKNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  310
             VI+EA + A KEHAKFTA+YIDVFE   + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  311  ALGLDEWCKNQDVTKLIIGQHIRNKWRDFFNTPLIDHLMSFEHSYKIEIVPIKQIPVELK  370
            A +L +WC    VTKL++GQ  + +W+D+F+ +LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  371  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  430
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  431  TRSFIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  490
            T+S++IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  491  YSITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  550
             S+T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  551  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  607
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  608  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  667
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  668  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  727
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  728  QPYLVSELVEEIDMILERRHLKKRITVSSSVNLQFIHIDSKLILQALFNLIENAVKHTST  787
             PYLV EL+EE++  L RRH  +++ + +  +  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  788  DTKINLSIRYASYEQIEFAVIDEGPGISLEEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  847
            ++ I+L ++  + ++I F +ID G GI+ EE+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHET-NKIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  848  LVQTILHKHQSNLQYKPNQPHGSIFYF  874
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

36) SAOUHSC_02314 in NC_007795


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  811 bits (3070),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 508/867 (59%), Positives = 704/867 (82%), Gaps = 7/867 (0%)

Query  11   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIEPHQRDETNALAEQLPKIT  70
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGYIEPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  71   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  130
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  131  TTLNIQHIESLSSQIELMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  190
            TTLNIQHIESLS+QI LMTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  191  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  250
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  251  AVIKEAFHIAQKEHAKFTAIYIDVFEKNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  310
             VI+EA + A KEHAKFTA+YIDVFE   + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  311  ALGLDEWCKNQDVTKLIIGQHIRNKWRDFFNTPLIDHLMSFEHSYKIEIVPIKQIPVELK  370
            A +L +WC    VTKL++GQ  + +W+D+F+ +LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  371  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  430
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  431  TRSFIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  490
            T+S++IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  491  YSITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  550
             S+T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  551  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  607
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  608  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  667
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  668  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  727
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  728  QPYLVSELVEEIDMILERRHLKKRITVSSSVNLQFIHIDSKLILQALFNLIENAVKHTST  787
             PYLV EL+EE++  L RRH  +++ + +  +  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  788  DTKINLSIRYASYEQIEFAVIDEGPGISLEEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  847
            ++ I+L ++  + ++I F +ID G GI+ EE+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHET-NKIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  848  LVQTILHKHQSNLQYKPNQPHGSIFYF  874
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

37) kdpD in NC_007622


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  811 bits (3071),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 508/867 (59%), Positives = 705/867 (82%), Gaps = 7/867 (0%)

Query  11   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIEPHQRDETNALAEQLPKIA  70
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGYIEPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  71   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  130
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  131  TTLNIQHIESLSSQIELMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKR  190
            TTLNIQHIESLS+QI LMTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYK+
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  191  DRLDVAFNNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNNKTSLKPHIAVAISGSIYNE  250
            +RL+ AF+NFFTY +L+ELR LTLRTVAD+MS+K +    + T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  251  AVIKEAFHIAQKEHAKFTAIYIDVFEKNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  310
             VI+EA + A KEHAKFTA+YIDVFE   + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  311  ALGLDEWCKNQDVTKLIIGQHIRNKWRDFFNKPLIDHLMSFEHSYKIEIVPIKQIPVELK  370
            A +L +WC    VTKL++GQ  + +W+D+F+++LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  371  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  430
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  431  TRSYIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  490
            T+SY+IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  491  YSITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  550
             S+T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  551  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  607
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  608  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  667
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  668  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  727
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  728  QPYLVSELVEEIDMILERRHLKKRITISSSVDLQFIHIDSKLILQALFNLIENAVKHTST  787
             PYLV EL+EE++  L RRH  +++ I +  D  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  788  DTKINLSIRYASDEQIEFAVIDEGPGISLEEQQKIFEPFYTRSNKYFKDNQKESMGLGLY  847
            ++ I+L ++  ++ +I F +ID G GI+ EE+Q IF+P+Y+  N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHETN-KIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  848  LVQTILHKHQSNLQYKPNQPHGSIFYF  874
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

38) kdpD in NC_020529


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  811 bits (3069),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 508/867 (59%), Positives = 704/867 (82%), Gaps = 7/867 (0%)

Query  35   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIEPHQRDETNALAEQLPKIT  94
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGYIEPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  95   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  154
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  155  TTLNIQHIESLSSQIELMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  214
            TTLNIQHIESLS+QI LMTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  215  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  274
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  275  AVIKEAFHIAQKEHAKFTAIYIDVFEKNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  334
             VI+EA + A KEHAKFTA+YIDVFE   + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  335  ALGLDEWCKNQDVTKLIIGQHIRNKWRDFFNTPLIDHLMSFEHSYKIEIVPIKQIPVELK  394
            A +L +WC    VTKL++GQ  + +W+D+F+ +LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  395  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  454
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  455  TRSFIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  514
            T+S++IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  515  YSITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  574
             S+T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  575  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  631
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  632  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  691
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  692  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  751
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  752  QPYLVSELVEEIDMILERRHLKKRITVSSSVNLQFIHIDSKLILQALFNLIENAVKHTST  811
             PYLV EL+EE++  L RRH  +++ + +  +  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  812  DTKINLSIRYASYEQIEFAVIDEGPGISLEEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  871
            ++ I+L ++  + ++I F +ID G GI+ EE+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHET-NKIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  872  LVQTILHKHQSNLQYKPNQPHGSIFYF  898
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

39) kdpD in NC_020564


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  811 bits (3069),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 508/867 (59%), Positives = 704/867 (82%), Gaps = 7/867 (0%)

Query  35   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIEPHQRDETNALAEQLPKIT  94
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGYIEPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  95   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  154
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  155  TTLNIQHIESLSSQIELMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  214
            TTLNIQHIESLS+QI LMTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  215  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  274
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  275  AVIKEAFHIAQKEHAKFTAIYIDVFEKNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  334
             VI+EA + A KEHAKFTA+YIDVFE   + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  335  ALGLDEWCKNQDVTKLIIGQHIRNKWRDFFNTPLIDHLMSFEHSYKIEIVPIKQIPVELK  394
            A +L +WC    VTKL++GQ  + +W+D+F+ +LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  395  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  454
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  455  TRSFIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  514
            T+S++IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  515  YSITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  574
             S+T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  575  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  631
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  632  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  691
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  692  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  751
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  752  QPYLVSELVEEIDMILERRHLKKRITVSSSVNLQFIHIDSKLILQALFNLIENAVKHTST  811
             PYLV EL+EE++  L RRH  +++ + +  +  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  812  DTKINLSIRYASYEQIEFAVIDEGPGISLEEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  871
            ++ I+L ++  + ++I F +ID G GI+ EE+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHET-NKIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  872  LVQTILHKHQSNLQYKPNQPHGSIFYF  898
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

40) kdpD in NC_020532


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  811 bits (3069),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 508/867 (59%), Positives = 704/867 (82%), Gaps = 7/867 (0%)

Query  35   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIEPHQRDETNALAEQLPKIT  94
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGYIEPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  95   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  154
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  155  TTLNIQHIESLSSQIELMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  214
            TTLNIQHIESLS+QI LMTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  215  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  274
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  275  AVIKEAFHIAQKEHAKFTAIYIDVFEKNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  334
             VI+EA + A KEHAKFTA+YIDVFE   + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  335  ALGLDEWCKNQDVTKLIIGQHIRNKWRDFFNTPLIDHLMSFEHSYKIEIVPIKQIPVELK  394
            A +L +WC    VTKL++GQ  + +W+D+F+ +LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  395  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  454
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  455  TRSFIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  514
            T+S++IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  515  YSITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  574
             S+T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  575  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  631
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  632  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  691
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  692  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  751
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  752  QPYLVSELVEEIDMILERRHLKKRITVSSSVNLQFIHIDSKLILQALFNLIENAVKHTST  811
             PYLV EL+EE++  L RRH  +++ + +  +  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  812  DTKINLSIRYASYEQIEFAVIDEGPGISLEEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  871
            ++ I+L ++  + ++I F +ID G GI+ EE+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHET-NKIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  872  LVQTILHKHQSNLQYKPNQPHGSIFYF  898
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

41) kdpD in NC_020533


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  811 bits (3069),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 508/867 (59%), Positives = 704/867 (82%), Gaps = 7/867 (0%)

Query  35   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIEPHQRDETNALAEQLPKIT  94
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGYIEPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  95   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  154
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  155  TTLNIQHIESLSSQIELMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  214
            TTLNIQHIESLS+QI LMTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  215  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  274
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  275  AVIKEAFHIAQKEHAKFTAIYIDVFEKNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  334
             VI+EA + A KEHAKFTA+YIDVFE   + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  335  ALGLDEWCKNQDVTKLIIGQHIRNKWRDFFNTPLIDHLMSFEHSYKIEIVPIKQIPVELK  394
            A +L +WC    VTKL++GQ  + +W+D+F+ +LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  395  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  454
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  455  TRSFIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  514
            T+S++IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  515  YSITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  574
             S+T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  575  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  631
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  632  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  691
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  692  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  751
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  752  QPYLVSELVEEIDMILERRHLKKRITVSSSVNLQFIHIDSKLILQALFNLIENAVKHTST  811
             PYLV EL+EE++  L RRH  +++ + +  +  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  812  DTKINLSIRYASYEQIEFAVIDEGPGISLEEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  871
            ++ I+L ++  + ++I F +ID G GI+ EE+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHET-NKIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  872  LVQTILHKHQSNLQYKPNQPHGSIFYF  898
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

42) SAI7S6_1015310 in NC_020537


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  811 bits (3069),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 508/867 (59%), Positives = 704/867 (82%), Gaps = 7/867 (0%)

Query  35   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIEPHQRDETNALAEQLPKIT  94
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGYIEPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  95   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  154
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  155  TTLNIQHIESLSSQIELMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  214
            TTLNIQHIESLS+QI LMTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  215  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  274
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  275  AVIKEAFHIAQKEHAKFTAIYIDVFEKNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  334
             VI+EA + A KEHAKFTA+YIDVFE   + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  335  ALGLDEWCKNQDVTKLIIGQHIRNKWRDFFNTPLIDHLMSFEHSYKIEIVPIKQIPVELK  394
            A +L +WC    VTKL++GQ  + +W+D+F+ +LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  395  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  454
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  455  TRSFIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  514
            T+S++IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  515  YSITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  574
             S+T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  575  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  631
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  632  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  691
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  692  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  751
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  752  QPYLVSELVEEIDMILERRHLKKRITVSSSVNLQFIHIDSKLILQALFNLIENAVKHTST  811
             PYLV EL+EE++  L RRH  +++ + +  +  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  812  DTKINLSIRYASYEQIEFAVIDEGPGISLEEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  871
            ++ I+L ++  + ++I F +ID G GI+ EE+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHET-NKIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  872  LVQTILHKHQSNLQYKPNQPHGSIFYF  898
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

43) SAT0131_02237 in NC_017347


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  811 bits (3070),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 508/867 (59%), Positives = 704/867 (82%), Gaps = 7/867 (0%)

Query  11   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIEPHQRDETNALAEQLPKIT  70
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGYIEPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  71   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  130
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  131  TTLNIQHIESLSSQIELMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  190
            TTLNIQHIESLS+QI LMTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  191  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  250
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  251  AVIKEAFHIAQKEHAKFTAIYIDVFEKNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  310
             VI+EA + A KEHAKFTA+YIDVFE   + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  311  ALGLDEWCKNQDVTKLIIGQHIRNKWRDFFNTPLIDHLMSFEHSYKIEIVPIKQIPVELK  370
            A +L +WC    VTKL++GQ  + +W+D+F+ +LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  371  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  430
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  431  TRSFIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  490
            T+S++IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  491  YSITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  550
             S+T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  551  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  607
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  608  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  667
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  668  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  727
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  728  QPYLVSELVEEIDMILERRHLKKRITVSSSVNLQFIHIDSKLILQALFNLIENAVKHTST  787
             PYLV EL+EE++  L RRH  +++ + +  +  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  788  DTKINLSIRYASYEQIEFAVIDEGPGISLEEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  847
            ++ I+L ++  + ++I F +ID G GI+ EE+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHET-NKIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  848  LVQTILHKHQSNLQYKPNQPHGSIFYF  874
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

44) kdpD in NC_017331


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  811 bits (3070),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 508/867 (59%), Positives = 704/867 (82%), Gaps = 7/867 (0%)

Query  11   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIEPHQRDETNALAEQLPKIT  70
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGYIEPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  71   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  130
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  131  TTLNIQHIESLSSQIELMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  190
            TTLNIQHIESLS+QI LMTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  191  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  250
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  251  AVIKEAFHIAQKEHAKFTAIYIDVFEKNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  310
             VI+EA + A KEHAKFTA+YIDVFE   + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  311  ALGLDEWCKNQDVTKLIIGQHIRNKWRDFFNTPLIDHLISFEHSYKIEIVPIKQIPVELK  370
            A +L +WC    VTKL++GQ  + +W+D+F+ +LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  371  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  430
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  431  TRSFIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  490
            T+S++IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  491  YSITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  550
             S+T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  551  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  607
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  608  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  667
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  668  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  727
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  728  QPYLVSELVEEIDMILERRHLKKRITVSSSVNLQFIHIDSKLILQALFNLIENAVKHTST  787
             PYLV EL+EE++  L RRH  +++ + +  +  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  788  DTKINLSIRYASYEQIEFAVIDEGPGISLEEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  847
            ++ I+L ++  + ++I F +ID G GI+ EE+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHET-NKIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  848  LVQTILHKHQSNLQYKPNQPHGSIFYF  874
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

45) SAI5S5_1015250 in NC_020566


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  811 bits (3069),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 508/867 (59%), Positives = 704/867 (82%), Gaps = 7/867 (0%)

Query  35   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIEPHQRDETNALAEQLPKIT  94
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGYIEPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  95   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  154
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  155  TTLNIQHIESLSSQIELMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  214
            TTLNIQHIESLS+QI LMTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  215  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  274
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  275  AVIKEAFHIAQKEHAKFTAIYIDVFEKNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  334
             VI+EA + A KEHAKFTA+YIDVFE   + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  335  ALGLDEWCKNQDVTKLIIGQHIRNKWRDFFNTPLIDHLMSFEHSYKIEIVPIKQIPVELK  394
            A +L +WC    VTKL++GQ  + +W+D+F+ +LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  395  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  454
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  455  TRSFIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  514
            T+S++IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  515  YSITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  574
             S+T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  575  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  631
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  632  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  691
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  692  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  751
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  752  QPYLVSELVEEIDMILERRHLKKRITVSSSVNLQFIHIDSKLILQALFNLIENAVKHTST  811
             PYLV EL+EE++  L RRH  +++ + +  +  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  812  DTKINLSIRYASYEQIEFAVIDEGPGISLEEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  871
            ++ I+L ++  + ++I F +ID G GI+ EE+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHET-NKIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  872  LVQTILHKHQSNLQYKPNQPHGSIFYF  898
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

46) SAI6T6_1015270 in NC_020536


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  811 bits (3069),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 508/867 (59%), Positives = 704/867 (82%), Gaps = 7/867 (0%)

Query  35   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIEPHQRDETNALAEQLPKIT  94
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGYIEPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  95   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  154
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  155  TTLNIQHIESLSSQIELMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  214
            TTLNIQHIESLS+QI LMTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  215  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  274
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  275  AVIKEAFHIAQKEHAKFTAIYIDVFEKNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  334
             VI+EA + A KEHAKFTA+YIDVFE   + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  335  ALGLDEWCKNQDVTKLIIGQHIRNKWRDFFNTPLIDHLMSFEHSYKIEIVPIKQIPVELK  394
            A +L +WC    VTKL++GQ  + +W+D+F+ +LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  395  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  454
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  455  TRSFIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  514
            T+S++IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  515  YSITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  574
             S+T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  575  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  631
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  632  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  691
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  692  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  751
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  752  QPYLVSELVEEIDMILERRHLKKRITVSSSVNLQFIHIDSKLILQALFNLIENAVKHTST  811
             PYLV EL+EE++  L RRH  +++ + +  +  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  812  DTKINLSIRYASYEQIEFAVIDEGPGISLEEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  871
            ++ I+L ++  + ++I F +ID G GI+ EE+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHET-NKIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  872  LVQTILHKHQSNLQYKPNQPHGSIFYF  898
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

47) SAI8T7_1015290 in NC_020568


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  811 bits (3069),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 508/867 (59%), Positives = 704/867 (82%), Gaps = 7/867 (0%)

Query  35   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIEPHQRDETNALAEQLPKIT  94
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGYIEPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  95   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  154
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  155  TTLNIQHIESLSSQIELMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  214
            TTLNIQHIESLS+QI LMTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  215  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  274
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  275  AVIKEAFHIAQKEHAKFTAIYIDVFEKNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  334
             VI+EA + A KEHAKFTA+YIDVFE   + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  335  ALGLDEWCKNQDVTKLIIGQHIRNKWRDFFNTPLIDHLMSFEHSYKIEIVPIKQIPVELK  394
            A +L +WC    VTKL++GQ  + +W+D+F+ +LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  395  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  454
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  455  TRSFIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  514
            T+S++IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  515  YSITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  574
             S+T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  575  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  631
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  632  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  691
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  692  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  751
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  752  QPYLVSELVEEIDMILERRHLKKRITVSSSVNLQFIHIDSKLILQALFNLIENAVKHTST  811
             PYLV EL+EE++  L RRH  +++ + +  +  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  812  DTKINLSIRYASYEQIEFAVIDEGPGISLEEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  871
            ++ I+L ++  + ++I F +ID G GI+ EE+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHET-NKIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  872  LVQTILHKHQSNLQYKPNQPHGSIFYF  898
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

48) kdpD in NC_007793


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  811 bits (3070),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 508/867 (59%), Positives = 704/867 (82%), Gaps = 7/867 (0%)

Query  11   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIEPHQRDETNALAEQLPKIT  70
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGYIEPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  71   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  130
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  131  TTLNIQHIESLSSQIELMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  190
            TTLNIQHIESLS+QI LMTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  191  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  250
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  251  AVIKEAFHIAQKEHAKFTAIYIDVFEKNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  310
             VI+EA + A KEHAKFTA+YIDVFE   + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  311  ALGLDEWCKNQDVTKLIIGQHIRNKWRDFFNTPLIDHLMSFEHSYKIEIVPIKQIPVELK  370
            A +L +WC    VTKL++GQ  + +W+D+F+ +LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  371  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  430
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  431  TRSFIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  490
            T+S++IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  491  YSITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  550
             S+T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  551  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  607
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  608  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  667
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  668  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  727
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  728  QPYLVSELVEEIDMILERRHLKKRITVSSSVNLQFIHIDSKLILQALFNLIENAVKHTST  787
             PYLV EL+EE++  L RRH  +++ + +  +  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  788  DTKINLSIRYASYEQIEFAVIDEGPGISLEEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  847
            ++ I+L ++  + ++I F +ID G GI+ EE+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHET-NKIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  848  LVQTILHKHQSNLQYKPNQPHGSIFYF  874
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

49) kdpD in NC_010079


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  811 bits (3070),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 508/867 (59%), Positives = 704/867 (82%), Gaps = 7/867 (0%)

Query  11   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIEPHQRDETNALAEQLPKIT  70
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGYIEPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  71   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  130
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  131  TTLNIQHIESLSSQIELMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  190
            TTLNIQHIESLS+QI LMTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  191  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  250
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  251  AVIKEAFHIAQKEHAKFTAIYIDVFEKNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  310
             VI+EA + A KEHAKFTA+YIDVFE   + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  311  ALGLDEWCKNQDVTKLIIGQHIRNKWRDFFNTPLIDHLMSFEHSYKIEIVPIKQIPVELK  370
            A +L +WC    VTKL++GQ  + +W+D+F+ +LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  371  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  430
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  431  TRSFIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  490
            T+S++IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  491  YSITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  550
             S+T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  551  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  607
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  608  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  667
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  668  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  727
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  728  QPYLVSELVEEIDMILERRHLKKRITVSSSVNLQFIHIDSKLILQALFNLIENAVKHTST  787
             PYLV EL+EE++  L RRH  +++ + +  +  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  788  DTKINLSIRYASYEQIEFAVIDEGPGISLEEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  847
            ++ I+L ++  + ++I F +ID G GI+ EE+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHET-NKIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  848  LVQTILHKHQSNLQYKPNQPHGSIFYF  874
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

50) SAVC_09275 in NC_016912


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  811 bits (3070),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 508/867 (59%), Positives = 704/867 (82%), Gaps = 7/867 (0%)

Query  11   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIEPHQRDETNALAEQLPKIT  70
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGYIEPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  71   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  130
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  131  TTLNIQHIESLSSQIELMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  190
            TTLNIQHIESLS+QI LMTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  191  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  250
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  251  AVIKEAFHIAQKEHAKFTAIYIDVFEKNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  310
             VI+EA + A KEHAKFTA+YIDVFE   + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  311  ALGLDEWCKNQDVTKLIIGQHIRNKWRDFFNTPLIDHLMSFEHSYKIEIVPIKQIPVELK  370
            A +L +WC    VTKL++GQ  + +W+D+F+ +LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  371  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  430
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  431  TRSFIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  490
            T+S++IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  491  YSITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  550
             S+T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  551  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  607
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  608  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  667
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  668  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  727
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  728  QPYLVSELVEEIDMILERRHLKKRITVSSSVNLQFIHIDSKLILQALFNLIENAVKHTST  787
             PYLV EL+EE++  L RRH  +++ + +  +  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  788  DTKINLSIRYASYEQIEFAVIDEGPGISLEEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  847
            ++ I+L ++  + ++I F +ID G GI+ EE+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHET-NKIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  848  LVQTILHKHQSNLQYKPNQPHGSIFYF  874
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

51) SAAG_02668 in NC_022113


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  810 bits (3065),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 507/867 (59%), Positives = 705/867 (82%), Gaps = 7/867 (0%)

Query  11   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKLGYIEPHQRDETNALAEQLPKIA  70
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIK+GYIEPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  71   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  130
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  131  TTLNIQHIESLSSQIELMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  190
            TTLNIQHIESLS+QI LMTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  191  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  250
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  251  AVIKEAFHIAQKEHAKFTAIYIDVFEKSRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  310
             VI+EA + A KEHAKFTA+YIDVFE + + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  311  ALGLDEWCKNQDVTKLIIGQHIRNKRRDFFNKPLIDHLMSFEHSYKIEIVPIKQIPVELK  370
            A +L +WC    VTKL++GQ  + +++D+F+++LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  371  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  430
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  431  TRSYIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  490
            T+SY+IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  491  YAITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  550
             ++T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  551  PLQNH-IDNKTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  607
            ++ N+ I +  + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  608  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  667
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  668  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  727
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  728  QPYLVSELVEEIDMILERRHLKKRITVSSSVDLQFIHIDSKLILQALFNLIENAVKHTST  787
             PYLV EL+EE++  L RRH  +++ + +  D  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  788  DTKINLSIRYASDEQIEFAVIDEGPGISIEEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  847
            ++ I+L ++  ++ +I F +ID G GI+ EE+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHETN-KIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  848  LVQTILHKHQSNLQYKPNQPHGSIFYF  874
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

52) kdpD in NC_022222


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  810 bits (3067),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 510/867 (59%), Positives = 704/867 (82%), Gaps = 7/867 (0%)

Query  11   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIEPHQRDETNALAEQLPKIA  70
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGYIEPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  71   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  130
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  131  TTLNIQHIESLSSQIELMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  190
            TTLNIQHIESLS+QI LMTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  191  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  250
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  251  AVIKEAFHIAQKEHAKFTAIYIDVFEKNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  310
             VI+EA + A KEHAKFTA+YIDVFE   + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  311  ALGLDEWCKNQDVTKLIIGQHIRNKWRDFFNKPLIDHLMSFEHSYKIEIVPIKQIPVELK  370
            A +L +WC    VTKL++GQ  + +W+D+F+++LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  371  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKYESSTiilmifligiillsiW  430
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  431  TRSYIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  490
            T+SY+IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  491  YSITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  550
             S+T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  551  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDN  607
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I  
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  608  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  667
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  668  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  727
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  728  QPYLVSELVEEIDMILERRHLKKRITVSSSVDLQFIHIDSKLILQALFNLIENAVKHTST  787
             PYLV EL+EE++  L RRH  +++ + +  D  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  788  DTKINLSIRYASDEQIEFAVIDEGPGISLEEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  847
            ++ I+L ++  ++ +I F +ID G GI+ EE+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHETN-KIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  848  LVQTILHKHQSNLQYKPNQPHGSIFYF  874
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

53) CA347_2159 in NC_021554


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  810 bits (3068),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 508/867 (59%), Positives = 704/867 (82%), Gaps = 7/867 (0%)

Query  11   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYVEPHQRDETNALAEQLPKIA  70
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGY+EPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  71   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  130
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  131  TTLNIQHIESLSSQIELMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  190
            TTLNIQHIESLS+QI LMTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  191  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKIRHNHKTSLKPHIAVAISGSIYNE  250
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  251  AVIKEAFHIAQKEHAKFTAIYIDVFEKNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  310
             VI+EA + A KEHAKFTA+YIDVFE   + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  311  ALGLDEWCKNQDVTKLIIGQHIRNKWRDFFNKPLIDHLMSFEHSYKIEIVPIKQIPVELK  370
            A +L +WC    VTKL++GQ  + +W+D+F+++LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  371  MNKSPYRPKGKRFAIDMFKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  430
             N +    K+ R+++++ KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  431  TRSYIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  490
            T+SY+IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  491  YAITKRQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  550
             ++T RQLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  551  PLQNH-INNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  607
            ++ N+ I+++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  608  QSSQVINPYDASILESMLNELSLAVENVMLLKQTRESMLQAERQLTHSNFLRSISHDIRT  667
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  668  PLTTIMGNLDILVSHSKDMSIIEKKQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  727
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  728  QPYLVSELVEEIDMILERRHLKKRITVSSSVDLQFIHIDSKLILQALFNLIENAVKHTST  787
             PYLV EL+EE++  L RRH  +++ + +  D  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  788  DTKINLSIRYASDEQIEFAVTDEGPGISLEEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  847
            ++ I+L ++  ++ +I F + D G GI+ EE+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHETN-KIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  848  LVQTILHKHQSNLQYKPNQPHGSIFYF  874
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

54) SAKOR_02044 in NC_022226


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  810 bits (3068),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 508/867 (59%), Positives = 704/867 (82%), Gaps = 7/867 (0%)

Query  35   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIEPHQRDETNALAEQLPKIT  94
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGYIEPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  95   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  154
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  155  TTLNIQHIESLSSQIELMTAVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  214
            TTLNIQHIESLS+QI LMT+++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  215  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  274
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  275  AVIKEAFHIAQKEHAKFTAIYIDVFEKNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  334
             VI+EA + A KEHAKFTA+YIDVFE   + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  335  ALGLDEWCKNQDVTKLIIGQHIRNKWRDFFNTPLIDHLMSFEHSYKIEIVPIKQIPVELK  394
            A +L +WC    VTKL++GQ  + +W+D+F+ +LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  395  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  454
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  455  TRSFIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  514
            T+S++IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  515  YSITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  574
             S+T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  575  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  631
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  632  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  691
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  692  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  751
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  752  QPYLVSELVEEIDMILERRHLKKRITVSSSVDLQFIHIDSKLILQALFNLIENAVKHTST  811
             PYLV EL+EE++  L RRH  +++ + +  D  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  812  DTKINLSIRYASDEQIEFAVIDEGPGISLEEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  871
            ++ I+L ++  ++ +I F +ID G GI+ EE+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHETN-KIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  872  LVQTILHKHQSNLQYKPNQPHGSIFYF  898
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

55) kdpD in NC_002952


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  810 bits (3065),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 507/867 (59%), Positives = 705/867 (82%), Gaps = 7/867 (0%)

Query  11   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKLGYIEPHQRDETNALAEQLPKIA  70
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIK+GYIEPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  71   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  130
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  131  TTLNIQHIESLSSQIELMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  190
            TTLNIQHIESLS+QI LMTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  191  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  250
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  251  AVIKEAFHIAQKEHAKFTAIYIDVFEKSRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  310
             VI+EA + A KEHAKFTA+YIDVFE + + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  311  ALGLDEWCKNQDVTKLIIGQHIRNKRRDFFNKPLIDHLMSFEHSYKIEIVPIKQIPVELK  370
            A +L +WC    VTKL++GQ  + +++D+F+++LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  371  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  430
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  431  TRSYIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  490
            T+SY+IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  491  YAITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  550
             ++T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  551  PLQNH-IDNKTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  607
            ++ N+ I +  + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  608  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  667
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  668  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  727
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  728  QPYLVSELVEEIDMILERRHLKKRITVSSSVDLQFIHIDSKLILQALFNLIENAVKHTST  787
             PYLV EL+EE++  L RRH  +++ + +  D  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  788  DTKINLSIRYASDEQIEFAVIDEGPGISIEEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  847
            ++ I+L ++  ++ +I F +ID G GI+ EE+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHETN-KIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  848  LVQTILHKHQSNLQYKPNQPHGSIFYF  874
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

56) kdpD in NC_017342


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  808 bits (3060),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 507/867 (59%), Positives = 705/867 (82%), Gaps = 7/867 (0%)

Query  35   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKLGYIEPHQRDETNALAEQLPKIA  94
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIK+GYIEPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  95   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  154
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  155  TTLNIQHIESLSSQIELMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  214
            TTLNIQHIESLS+QI LMTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  215  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  274
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  275  AVIKEAFHIAQKEHAKFTAIYIDVFEKSRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  334
             VI+EA + A KEHAKFTA+YIDVFE + + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  335  ALGLDEWCKNQDVTKLIIGQHIRNKRRDFFNKPLIDHLMSFEHSYKIEIVPIKQIPVELK  394
            A +L +WC    VTKL++GQ  + +++D+F+++LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  395  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  454
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  455  TRSYIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  514
            T+SY+IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  515  YAITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  574
             ++T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  575  PLQNH-IDNKTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  631
            ++ N+ I +  + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  632  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  691
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  692  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  751
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  752  QPYLVSELVEEIDMILERRHLKKRITVSSSVDLQFIHIDSKLILQALFNLIENAVKHTST  811
             PYLV EL+EE++  L RRH  +++ + +  D  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  812  DTKINLSIRYASDEQIEFAVIDEGPGISIEEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  871
            ++ I+L ++  ++ +I F +ID G GI+ EE+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHETN-KIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  872  LVQTILHKHQSNLQYKPNQPHGSIFYF  898
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

57) kdpD in NC_018608


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  801 bits (3033),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 504/867 (59%), Positives = 703/867 (82%), Gaps = 7/867 (0%)

Query  11   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIEPHQRDETNALAEQLLKIA  70
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGYIEPHQR ETNAL +QL  I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  71   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  130
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  131  TTLNIQHIESLSSQIERMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  190
            TTLNIQHIESLS+QI  MTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  191  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  250
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  251  AVIKEAFHIAQKEHAKFTAIYIDVFEISRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  310
             VI+EA + A KEHAKFTA+YIDVFE + + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  311  ALGLDEWCKNQDVTKLIIGQHIRNKRRDFFNKPLIDHLMSFEHSYNIEIVPIKQIPVELK  370
            A +L +WC    VTKL++GQ  + +++D+F+++LI+++    H +++EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  371  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  430
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  431  TRSYIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  490
            T+SY+IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  491  YAITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  550
             ++T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  551  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  607
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  608  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  667
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  668  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  727
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  728  QPYLVSELVEEIDMILERRHLKKRITVSSSVDLQFIHIDSKLILQALFNLIENAVKHTST  787
             PYLV EL+EE++  L RRH  +++ + +  D  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  788  DTKINLSIRYASDEQIEFAVIDEGPGISLKEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  847
            ++ I+L ++  ++ +I F +ID G GI+  E+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHETN-KIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  848  LVQTILHKHQSNLQYKPNQPHGSIFYF  874
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

58) SAPIG2120 in NC_017333


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  801 bits (3033),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 504/867 (59%), Positives = 703/867 (82%), Gaps = 7/867 (0%)

Query  11   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIEPHQRDETNALAEQLLKIA  70
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGYIEPHQR ETNAL +QL  I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  71   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  130
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  131  TTLNIQHIESLSSQIERMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  190
            TTLNIQHIESLS+QI  MTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  191  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  250
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  251  AVIKEAFHIAQKEHAKFTAIYIDVFEISRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  310
             VI+EA + A KEHAKFTA+YIDVFE + + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  311  ALGLDEWCKNQDVTKLIIGQHIRNKRRDFFNKPLIDHLMSFEHSYNIEIVPIKQIPVELK  370
            A +L +WC    VTKL++GQ  + +++D+F+++LI+++    H +++EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  371  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  430
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  431  TRSYIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  490
            T+SY+IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  491  YAITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  550
             ++T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  551  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  607
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  608  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  667
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  668  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  727
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  728  QPYLVSELVEEIDMILERRHLKKRITVSSSVDLQFIHIDSKLILQALFNLIENAVKHTST  787
             PYLV EL+EE++  L RRH  +++ + +  D  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  788  DTKINLSIRYASDEQIEFAVIDEGPGISLKEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  847
            ++ I+L ++  ++ +I F +ID G GI+  E+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHETN-KIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  848  LVQTILHKHQSNLQYKPNQPHGSIFYF  874
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

59) kdpD in NC_017568


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  799 bits (3023),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 524/865 (61%), Positives = 714/865 (83%), Gaps = 4/865 (0%)

Query  8    KRGALTIYLGYSPGVGKTYEMLSNAIDAYHEGADIKIGYIEPHQRKETQALAEQLPVIQT  67
            KRG LTIYLGYSPGVGKTYEMLSN+ID Y+EGADIKIGYIEPHQR ET+AL +QLP I T
Sbjct  24   KRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIST  83

Query  68   KSKNHGSHTFHYLDVDQIIEDDPDVVLIDELAHTNISKERHEKRYMDIEEILSHGIDVHT  127
             S++ GSHTFHY+DV +IIE +PDVVLIDELAHTNISKERH KRY DIEEILSHGIDV T
Sbjct  84   SSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVWT  143

Query  128  TLNIQHIESLSEQVALLTGVKIKERVPDQFIMSSDAIEVIDISPKQLINRLKAGKVYKKE  187
            TLNIQHIESLS Q+AL+TG+++ ERVPDQFI S+DA+EV+DISP+ LI+RLKAGKVYKKE
Sbjct  144  TLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKKE  203

Query  188  RLDTAFSHFFTYENltelreltlrtAADMMSQKEHLYK-KNTDITPHVAVAISGSISNET  246
            RL+TAFS+FFTYENLTELRELTLRT AD+MSQK + YK K+TDITPH+AVAISGSI NE 
Sbjct  204  RLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNER  263

Query  247  VIREARRIANREHAQFTAVYIDVFDHEGKQYANNSQVHQNLMLAQSLGASVKVIYDNQIA  306
            VIREARR A +EHA+FTAVYIDVF+  +    ++  VH+NLMLA++LGA +KV+Y ++IA
Sbjct  264  VIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDIA  323

Query  307  SGLDDWCKSQKVTKLVIGQHMNDKWHTRLKRPLIDQLLDLKHHYKIEIVPIKHIQMKAKP  366
             +L DWC    VTKLV+GQ  + +W   +K++LI+Q+ ++ HH+K+EIVPI  I+     
Sbjct  324  KALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKPT  383

Query  367  ERQHQHMQQKRWTVDIFKMIAIQAICVLLGLWIYSTGKGEQDTiilllfllgivvlSMWT  426
            +   Q  +  R TV+I KM+ IQ+ICVLLG+W+Y+ +K+E  +IILL+F++GI+VLS+WT
Sbjct  384  NTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIWT  443

Query  427  QSYLIGFFAAIlnvlvfnffftvprftfEVYRFDYPitftisiivsivtsGLLKQIKHQY  486
            QSYLIGFFA+ILNV+VFN+FFTVPRFT+E+YRF+YPITF+ SI+ SI TS++LK++KHQ 
Sbjct  444  QSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQH  503

Query  487  IVTKHQLYRTDILLQFNDSIKQTYTIPDLLVNARHQIQHLLKQEVTIYLVEDEKISKTIP  546
             +T +QLYRT+I+LQFN+SIK++Y+I  LL  A +QI++LL+Q+VT++L++  K++ + +
Sbjct  504  SLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASNS  563

Query  547  VEG---PQTNDSRHQQALSWIIKNQKRAGATTDTFPGIHYLLIPIGTKPVKAIVSIHFSE  603
                  + ++ +++ ++LSW+I N+ RAG  TDTFPG  +L IPIGT+PVK+++SI+F++
Sbjct  564  FGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPGSKFLCIPIGTNPVKGVISIRFTD  623

Query  604  AQIIDSYDNSILESMLNEMSLAVENLSLLRQTRESMLRAEREVARAHFLRSISHDIRTPL  663
               ID+YDNSIL+SMLN+++LA+EN+ LL+QTR+S+L+AERE +R++FL+SISHDIRTPL
Sbjct  624  ETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRTPL  683

Query  664  TSIIGNLDVLLLNGKEMPRAEQQQLVSRSFDEAQYLHMLVSNILSLTRLEHSNMKLNRQL  723
            TSI+GNLD+L  +  ++   +Q +L++ S++EAQYLH LV+NILSLT+LE S+++++R  
Sbjct  684  TSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQRTP  743

Query  724  YlieelveeiesvlerrrlNKQVKVSALHEICFVDIDSQLILQAVFNLIENALKHTPPET  783
            YL+EEL+EE+E  L RR+  ++V +   ++  +++IDS+LILQ +FNLI+NALKH+ +++
Sbjct  744  YLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAESHS  803

Query  784  PITLRINKNEPHILFEVIDRGPGLSDEEQQTIFQPFEKHQLFKDNKKDSMGLGLYLVQAI  843
             I L+++ +   I FE+ID G G+++EE+Q IF+P+   + FKDNKKDS+GLGLYLVQ I
Sbjct  804  EIKLHVQHETNKIKFEMIDCGKGIPEEERQLIFNPYYSGDNFKDNKKDSLGLGLYLVQLI  863

Query  844  LQKHDSQLKYRQNEPHGSIFYFNLP  868
            L++H+S+L Y+ N P+GSIFYF L 
Sbjct  864  LKQHNSELEYQPNTPQGSIFYFYLT  888

60) SPSINT_0108 in NC_014925


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  799 bits (3023),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 524/865 (61%), Positives = 714/865 (83%), Gaps = 4/865 (0%)

Query  8    KRGALTIYLGYSPGVGKTYEMLSNAIDAYHEGADIKIGYIEPHQRKETQALAEQLPVIQT  67
            KRG LTIYLGYSPGVGKTYEMLSN+ID Y+EGADIKIGYIEPHQR ET+AL +QLP I T
Sbjct  24   KRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIST  83

Query  68   KSKNHGSHTFHYLDVDQIIEDDPDVVLIDELAHTNISKERHEKRYMDIEEILSHGIDVHT  127
             S++ GSHTFHY+DV +IIE +PDVVLIDELAHTNISKERH KRY DIEEILSHGIDV T
Sbjct  84   SSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVWT  143

Query  128  TLNIQHIESLSEQVALLTGVKIKERVPDQFIMSSDAIEVIDISPKQLINRLKAGKVYKKE  187
            TLNIQHIESLS Q+AL+TG+++ ERVPDQFI S+DA+EV+DISP+ LI+RLKAGKVYKKE
Sbjct  144  TLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKKE  203

Query  188  RLDTAFSHFFTYENltelreltlrtAADMMSQKEHLYK-KNTDITPHVAVAISGSISNET  246
            RL+TAFS+FFTYENLTELRELTLRT AD+MSQK + YK K+TDITPH+AVAISGSI NE 
Sbjct  204  RLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNER  263

Query  247  VIREARRIANREHAQFTAVYIDVFDHEGKQYANNSQVHQNLMLAQSLGASVKVIYDNQIA  306
            VIREARR A +EHA+FTAVYIDVF+  +    ++  VH+NLMLA++LGA +KV+Y ++IA
Sbjct  264  VIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDIA  323

Query  307  SGLDDWCKSQKVTKLVIGQHMNDKWHTRLKRPLIDQLLDLKHHYKIEIVPIKHIQMKAKP  366
             +L DWC    VTKLV+GQ  + +W   +K++LI+Q+ ++ HH+K+EIVPI  I+     
Sbjct  324  KALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKPT  383

Query  367  ERQHQHMQQKRWTVDIFKMIAIQAICVLLGLWIYSTGKGEQDTiilllfllgivvlSMWT  426
            +   Q  +  R TV+I KM+ IQ+ICVLLG+W+Y+ +K+E  +IILL+F++GI+VLS+WT
Sbjct  384  NTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIWT  443

Query  427  QSYLIGFFAAIlnvlvfnffftvprftfEVYRFDYPitftisiivsivtsGLLKQIKHQY  486
            QSYLIGFFA+ILNV+VFN+FFTVPRFT+E+YRF+YPITF+ SI+ SI TS++LK++KHQ 
Sbjct  444  QSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQH  503

Query  487  IVTKHQLYRTDILLQFNDSIKQTYTIPDLLVNARHQIQHLLKQEVTIYLVEDEKISKTIP  546
             +T +QLYRT+I+LQFN+SIK++Y+I  LL  A +QI++LL+Q+VT++L++  K++ + +
Sbjct  504  SLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASNS  563

Query  547  VEG---PQTNDSRHQQALSWIIKNQKRAGATTDTFPGIHYLLIPIGTKPVKAIVSIHFSE  603
                  + ++ +++ ++LSW+I N+ RAG  TDTFPG  +L IPIGT+PVK+++SI+F++
Sbjct  564  FGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPGSKFLCIPIGTNPVKGVISIRFTD  623

Query  604  AQIIDSYDNSILESMLNEMSLAVENLSLLRQTRESMLRAEREVARAHFLRSISHDIRTPL  663
               ID+YDNSIL+SMLN+++LA+EN+ LL+QTR+S+L+AERE +R++FL+SISHDIRTPL
Sbjct  624  ETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRTPL  683

Query  664  TSIIGNLDVLLLNGKEMPRAEQQQLVSRSFDEAQYLHMLVSNILSLTRLEHSNMKLNRQL  723
            TSI+GNLD+L  +  ++   +Q +L++ S++EAQYLH LV+NILSLT+LE S+++++R  
Sbjct  684  TSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQRTP  743

Query  724  YlieelveeiesvlerrrlNKQVKVSALHEICFVDIDSQLILQAVFNLIENALKHTPPET  783
            YL+EEL+EE+E  L RR+  ++V +   ++  +++IDS+LILQ +FNLI+NALKH+ +++
Sbjct  744  YLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAESHS  803

Query  784  PITLRINKNEPHILFEVIDRGPGLSDEEQQTIFQPFEKHQLFKDNKKDSMGLGLYLVQAI  843
             I L+++ +   I FE+ID G G+++EE+Q IF+P+   + FKDNKKDS+GLGLYLVQ I
Sbjct  804  EIKLHVQHETNKIKFEMIDCGKGIPEEERQLIFNPYYSGDNFKDNKKDSLGLGLYLVQLI  863

Query  844  LQKHDSQLKYRQNEPHGSIFYFNLP  868
            L++H+S+L Y+ N P+GSIFYF L 
Sbjct  864  LKQHNSELEYQPNTPQGSIFYFYLT  888

61) ST398NM01_2120 in NC_017673


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  797 bits (3017),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 503/867 (59%), Positives = 702/867 (81%), Gaps = 7/867 (0%)

Query  35   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKIGYIEPHQRDETNALAEQLLKIA  94
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIKIGYIEPHQR ETNAL +QL  I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  95   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  154
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  155  TTLNIQHIESLSSQIERMTGVHVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  214
            TTLNIQHIESLS+QI  MTG++V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  215  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  274
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  275  AVIKEAFHIAQKEHAKFTAIYIDVFEISRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  334
             VI+EA + A KEHAKFTA+YIDVFE + + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  335  ALGLDEWCKNQDVTKLIIGQHIRNKRRDFFNKPLIDHLMSFEHSYNIEIVPIKQIPVELK  394
            A +L +WC    VTKL++GQ  + +++D+F+++LI+++    H +++EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  395  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  454
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  455  TRSYIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  514
            T+SY+IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  515  YAITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  574
             ++T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  575  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  631
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  632  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  691
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  692  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  751
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  752  QPYLVSELVEEIDMILERRHLKKRITVSSSVDLQFIHIDSKLILQALFNLIENAVKHTST  811
             PYLV EL+EE++  L RRH  +++ + +  D  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  812  DTKINLSIRYASDEQIEFAVIDEGPRISLKEQQKIFEPFYTGSNKYFKDNQKESMGLGLY  871
            ++ I+L ++  ++ +I F +ID G  I+  E+Q IF+P+Y+G N  FKDN+K+S+GLGLY
Sbjct  802  HSEIKLHVQHETN-KIKFEMIDCGKGIPEEERQLIFNPYYSGDN--FKDNKKDSLGLGLY  858

Query  872  LVQTILHKHQSNLQYKPNQPHGSIFYF  898
            LVQ IL +H+S+L+Y+PN P+GSIFYF
Sbjct  859  LVQLILKQHNSELEYQPNTPQGSIFYF  885

62) kdpD in NC_017338


> NC_002952_R1|50|G37|49482313|YP_039537.1|Staphylococcus_aureus_subsp._aureus_MRSA252|-|40408..43128|-|SAR0069|sensor 
kinase
Length=906

 Score =  758 bits (2869),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 482/832 (58%), Positives = 671/832 (81%), Gaps = 6/832 (0%)

Query  11   KKRGSLTIYIGYSPGVGKTFEMLSNAIELFQSNVDIKLGYIEPHQRDETNALAEQLPKIA  70
            KKRG LTIY+GYSPGVGKT+EMLSN+I+ +Q   DIK+GYIEPHQR ETNAL +QLP I+
Sbjct  23   KKRGKLTIYLGYSPGVGKTYEMLSNGIDQYQEGADIKIGYIEPHQRPETNALVQQLPEIS  82

Query  71   TNFTKHGSHHFQYLDVDRIIEESPTIVLIDELAHTNISRDRHEKRYMDIEEILNHGIDVH  130
            T+  K GSH F+Y+DV +IIE +P +VLIDELAHTNIS++RH KRY DIEEIL+HGIDV 
Sbjct  83   TSSRKFGSHTFHYIDVSKIIEANPDVVLIDELAHTNISKERHLKRYKDIEEILSHGIDVW  142

Query  131  TTLNIQHIESLSSQIELMTGVYVKERVPDYFIMSADVLEVVDISPEQLIKRLKAGKVYKK  190
            TTLNIQHIESLS+QI LMTG+ V ERVPD FI SAD +EVVDISP+ LI+RLKAGKVYKK
Sbjct  143  TTLNIQHIESLSGQIALMTGIQVTERVPDQFITSADAFEVVDISPNMLIQRLKAGKVYKK  202

Query  191  DRLDVAFSNFFTYAHLSELRTLTLRTVADLMSDKEKVRHNHKTSLKPHIAVAISGSIYNE  250
            +RL+ AFSNFFTY +L+ELR LTLRTVAD+MS+K +      T + PHIAVAISGSIYNE
Sbjct  203  ERLETAFSNFFTYENLTELRELTLRTVADIMSQKGQQYKTKHTDITPHIAVAISGSIYNE  262

Query  251  AVIKEAFHIAQKEHAKFTAIYIDVFEKNRQYKDSQKQVHQHLMLAKSLGAKVKVVYSQTV  310
             VI+EA + A KEHAKFTA+YIDVFE   + +  +  VH++LMLAK+LGA +KV+Y+Q +
Sbjct  263  RVIREARRAAYKEHAKFTAVYIDVFETPSESRKQDHYVHKNLMLAKALGAEIKVLYAQDI  322

Query  311  ALGLDEWCKNQDVTKLIIGQHIRNKWRDFFNKPLIDHLMSFEHSYKIEIVPIKQIPVELK  370
            A +L +WC    VTKL++GQ  + +W+D+F+++LI+++    H +K+EIVPI  I  +  
Sbjct  323  AKALTDWCDLAFVTKLVLGQSEQPRWKDYFKQSLIEQINHVPHHFKLEIVPIHYIHSDKP  382

Query  371  MNKSPYRPKGKRFAIDMLKMILIQIICVMMGLWIYQLDKHESSTiilmifligiillsiW  430
             N +    K+ R++++++KM++IQ ICV++G+W+Y+LDK ESS+IIL++F+IGII+LSIW
Sbjct  383  TNTPKQAQKSSRLTVEIMKMLVIQTICVLLGIWVYNLDKSESSAIILLMFFIGIIVLSIW  442

Query  431  TRSYIIGFLAAIINVFVFNYFFTEPRYTFEVYRFDYPitfivsiltsiltsallKQIKFQ  490
            T+SY+IGF+A+I+NVFVFNYFFT PR+T+E+YRF+YPITF  SI++SI+TSA+LK++K Q
Sbjct  443  TQSYLIGFFASILNVFVFNYFFTVPRFTLEMYRFEYPITFATSIFASIFTSAILKNLKHQ  502

Query  491  YSITKKQLYRTDLLFQFNDSIKQTYTVENLLINAGYQINQLLQQSITIYVINQSKVIKTI  550
             S+T +QLYRT++++QFN+SIK++Y++E LL  AG QI+QLL+Q +T+++I+  KV  + 
Sbjct  503  HSLTERQLYRTNIMLQFNQSIKESYSIERLLNIAGDQIHQLLNQDVTVFLIQSKKVAASN  562

Query  551  PLQNH-IDNTTQQHE-QALSWVIKNERQAGATTDTFPGINKWL-IPIGTSPIKGILAIDY  607
            ++ N+ I ++ + H+ ++LSWVI NE +AG  TDTFPG +K L IPIGT+P+KG+++I +
Sbjct  563  SFGNRSISSSDKTHDAETLSWVIENESRAGKLTDTFPG-SKFLCIPIGTNPVKGVISIRF  621

Query  608  QSSQVINPYDASILESMLNELSLAVENVTLLKQTRESMLQAERQLTHSNFLRSISHDIRT  667
                 I+ YD SIL+SMLN+++LA+ENV LLKQTR+S+L+AER+ T+SNFL+SISHDIRT
Sbjct  622  TDETYIDTYDNSILDSMLNDITLAIENVDLLKQTRQSILKAEREATRSNFLHSISHDIRT  681

Query  668  PLTTIMGNLDILVSHSKDMSIIEKEQLLVHSFQESQYLYLLVTNILSLTKLQSSNVQIKL  727
            PLT+IMGNLD+L  H+ +++  ++ +LL  S+ E+QYL  LVTNILSLTKL+SS++QI+ 
Sbjct  682  PLTSIMGNLDMLKYHNEHLNDQQQAELLTASYGEAQYLHTLVTNILSLTKLESSDIQIQR  741

Query  728  QPYLVSELVEEIDMILERRHLKKRITVSSSVDLQFIHIDSKLILQALFNLIENAVKHTST  787
             PYLV EL+EE++  L RRH  +++ + +  D  +I+IDSKLILQ LFNLI+NA+KH+ +
Sbjct  742  TPYLVEELLEEFEEGLIRRHQANHVIIENEDDASLINIDSKLILQVLFNLIDNALKHAES  801

Query  788  DTKINLSIRYASDEQIEFAVIDEGPGISLEEQQKIFEPFYTG-SLKITKKKA  838
            ++ I+L ++  ++ +I F +ID G GI+ EE+Q IF+P+Y+G ++K  KK +
Sbjct  802  HSEIKLHVQHETN-KIKFEMIDCGKGIPEEERQLIFNPYYSGDNFKDNKKDS  852