Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of aec78 gene of AY857617

DNA-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) yeeW
( - )

NC_011745
(Escherichia coli ED1a)

7e-97

93.9

2) ECH74115_5038
( - )

NC_011353
(Escherichia coli EC4115)

2e-93

92.4

3) join
( - )

NC_017626
(Escherichia coli 042)

6e-82

• Sequence Alignments

1) yeeW in NC_011745


>AY857617|50|G46|57545670|AAW51761.1|Escherichia_coli_BEN2908|+|47762..48004|-|aec78|Aec78 
          Length = 243

 Score = 351 bits (906), Expect = 7e-97
 Identities = 186/198 (94%)
 Strand = Plus / Plus

Query: 1   atgaaatcattaaccacggaaacagcgctggatattctgattacgtggctgcaggacaat 60
           |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 46  atgaaatcattaaccacggaaacagcactggatattctgattgcgtggctgcaggacaat 105

Query: 61  atcgactgcgaatcgggaattatcttcgacaacgatgaggataaaactgattcggcagca 120
           |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 106 atcgactgcgaatcgggaattatctttgacaacgatgaggataaaacggattcggcagca 165

Query: 121 ctgttgccttgtatcgaacaggccagggagggtatccgtaccctgcgccaactgcagctt 180
           ||| |||| || || |||||||| ||||||| ||||| ||||||||||||||||||||||
Sbjct: 166 ctgctgccctgcattgaacaggcgagggaggatatccataccctgcgccaactgcagctt 225

Query: 181 ctgcaccagaaccggtga 198
           ||||| ||||||||||||
Sbjct: 226 ctgcaacagaaccggtga 243

2) ECH74115_5038 in NC_011353


>AY857617|50|G46|57545670|AAW51761.1|Escherichia_coli_BEN2908|+|47762..48004|-|aec78|Aec78 
          Length = 243

 Score = 340 bits (876), Expect = 2e-93
 Identities = 183/198 (92%)
 Strand = Plus / Plus

Query: 1   atgacatcattaaccccggaagcagcactggatattctgattgcgtggctgcaggacaat 60
           |||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 46  atgaaatcattaaccacggaaacagcactggatattctgattgcgtggctgcaggacaat 105

Query: 61  atcgacagcgaatccggaattatcttcgacaacgatgaggataaaacggattcggcagca 120
           |||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 106 atcgactgcgaatcgggaattatctttgacaacgatgaggataaaacggattcggcagca 165

Query: 121 ttgttgccctgtatcgaacaggtcagggaagatgtccgtaccctgcgccaactgcagctt 180
            || ||||||| || |||||||  ||||| ||| ||| ||||||||||||||||||||||
Sbjct: 166 ctgctgccctgcattgaacaggcgagggaggatatccataccctgcgccaactgcagctt 225

Query: 181 ctgcaacagaaccggtga 198
           ||||||||||||||||||
Sbjct: 226 ctgcaacagaaccggtga 243

3) join in NC_017626


>AY857617|50|G46|57545670|AAW51761.1|Escherichia_coli_BEN2908|+|47762..48004|-|aec78|Aec78 
          Length = 243

 Score = 301 bits (778), Expect = 6e-82
 Identities = 160/172 (93%)
 Strand = Plus / Plus

Query: 1   atgaaatcattaaccacggaaacagcgctggatattctgattacgtggctgcaggacaat 60
           |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 46  atgaaatcattaaccacggaaacagcactggatattctgattgcgtggctgcaggacaat 105

Query: 61  atcgactgcgaatcgggaattatcttcgacaacgatgaggataaaacaggttcggcagca 120
           |||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||
Sbjct: 106 atcgactgcgaatcgggaattatctttgacaacgatgaggataaaacggattcggcagca 165

Query: 121 ctgttgcgctgtatcgaacaggccagggagggtatccgtaccctgcgccaac 172
           ||| ||| ||| || |||||||| ||||||| ||||| ||||||||||||||
Sbjct: 166 ctgctgccctgcattgaacaggcgagggaggatatccataccctgcgccaac 217