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Homologs of ssaV gene of Y09357

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) ssaV
( YP_005242315.1 )

secretion system apparatus protein SsaV

NC_016857
(Salmonella enterica ST4/74)

0.0

100

2) SE451236_12935
( YP_008265613.1 )

secretion system apparatus protein SsaV

NC_021820
(Salmonella enterica 08-1736)

0.0

100

3) ssaV
( YP_005237284.1 )

secretion system apparatus protein SsaV

NC_016856
(Salmonella enterica 14028S)

0.0

100

4) SBOV14111
( YP_008505281.1 )

hypothetical protein

NC_022241
(Salmonella enterica 3114)

0.0

100

5) SEEH1578_16305
( YP_008247320.1 )

secretion system apparatus protein SsaV

NC_021810
(Salmonella enterica 41578)

0.0

100

6) SU5_02030
( YP_006087664.1 )

Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV)

NC_017623
(Salmonella enterica B182)

0.0

100

7) SEEB0189_12465
( YP_008308808.1 )

secretion system apparatus protein SsaV

NC_021844
(Salmonella enterica CFSAN000189)

0.0

100

8) CFSAN001921_10075
( YP_008255389.1 )

secretion system apparatus protein SsaV

NC_021814
(Salmonella enterica CFSAN001921)

0.0

100

9) CFSAN002069_01930
( YP_008249246.1 )

secretion system apparatus protein SsaV

NC_021812
(Salmonella enterica CFSAN002069)

0.0

100

10) SeD_A1929
( YP_002215718.1 )

secretion system apparatus protein SsaV

NC_011205
(Salmonella enterica CT_02021853)

0.0

100

11) STMMW_14191
( YP_005232473.1 )

putative type III secretion protein

NC_016854
(Salmonella enterica D23580)

0.0

100

12) ssaV
( NP_460379.1 )

secretion system apparatus protein SsaV

NC_003197
(Salmonella enterica LT2)

0.0

100

13) ssaV
( YP_002243731.1 )

secretion system apparatus protein SsaV

NC_011294
(Salmonella enterica P125109)

0.0

100

14) SPAB_01911
( YP_001588134.1 )

secretion system apparatus protein SsaV

NC_010102
(Salmonella enterica SGSC4150; SPB7)

0.0

100

15) ssaV
( YP_005181258.1 )

putative type III secretion protein

NC_016810
(Salmonella enterica SL1344)

0.0

100

16) SNSL254_A1525
( YP_002040666.1 )

secretion system apparatus protein SsaV

NC_011080
(Salmonella enterica SL254)

0.0

100

17) SeHA_C1547
( YP_002045417.1 )

secretion system apparatus protein SsaV

NC_011083
(Salmonella enterica SL476)

0.0

100

18) STMDT12_C14300
( YP_005247126.1 )

secretion system apparatus protein SsaV

NC_016860
(Salmonella enterica T000240)

0.0

100

19) STU288_03390
( YP_007901783.1 )

secretion system apparatus protein SsaV

NC_021151
(Salmonella enterica U288)

0.0

100

20) ssaV
( YP_005251918.1 )

secretion system apparatus protein SsaV

NC_016863
(Salmonella enterica UK-1)

0.0

100

21) SSPA1337
( YP_002142176.1 )

secretion system apparatus protein SsaV

NC_011147
(Salmonella enterica AKU12601)

0.0

22) ssaV
( YP_150690.1 )

Secretion system apparatus

NC_006511
(Salmonella enterica ATCC 9150)

0.0

23) CFSAN002050_13465
( YP_008260604.1 )

secretion system apparatus protein SsaV

NC_021818
(Salmonella enterica CFSAN002050)

0.0

24) SeSA_A1510
( YP_002114427.1 )

secretion system apparatus protein SsaV

NC_011094
(Salmonella enterica CVM19633)

0.0

25) ssaV
( YP_216422.1 )

secretion system apparatus protein SsaV

NC_006905
(Salmonella enterica SC-B67)

0.0

26) ssaV
( YP_002226671.1 )

secretion system apparatus protein SsaV

NC_011274
(Salmonella enterica 287/91)

0.0

27) ssaV
( YP_008480901.1 )

putative type III secretion protein

NC_022221
(Salmonella enterica CDC1983-67)

0.0

28) CFSAN001992_04520
( YP_007470662.1 )

secretion system apparatus protein SsaV

NC_020307
(Salmonella enterica CFSAN001992)

0.0

29) ssaV
( YP_005212439.1 )

putative type III secretion protein

NC_016831
(Salmonella enterica RKS5078)

0.0

30) I137_05675
( YP_008380645.1 )

secretion system apparatus protein SsaV

NC_021984
(Salmonella enterica S06004)

0.0

31) SeAg_B1759
( YP_002146628.1 )

secretion system apparatus protein SsaV

NC_011149
(Salmonella enterica SL483)

0.0

32) ssaV
( NP_456114.1 )

putative type III secretion protein

NC_003198
(Salmonella enterica CT18)

0.0

33) STBHUCCB_13720
( YP_005216930.1 )

Secretion system apparatus protein ssaV

NC_016832
(Salmonella enterica P-stx-12)

0.0

34) ssaV
( NP_805085.1 )

secretion system apparatus protein SsaV

NC_004631
(Salmonella enterica Ty2)

0.0

35) TY21A_06515
( YP_007925607.1 )

secretion system apparatus protein SsaV

NC_021176
(Salmonella enterica Ty21a)

0.0

36) ssaV
( YP_005396811.1 )

type III secretion protein

NC_017046
(Salmonella enterica 798)

0.0

100

37) SN31241_24840
( YP_008360400.1 )

Secretion system apparatus protein SsaV

NC_021902
(Salmonella enterica USMARC-S3124.1)

0.0

100

38) ssaV
( YP_002637873.1 )

secretion system apparatus protein SsaV

NC_012125
(Salmonella enterica RKS4594)

0.0

39) SARI_01568
( YP_001570604.1 )

secretion system apparatus protein SsaV

NC_010067
(Salmonella enterica RSK2980)

0.0

40) SG1300
( YP_454980.1 )

secretion system apparatus protein SsaV

NC_007712
(Sodalis glossinidius morsitans)

3e-177

41) ssaV
( YP_002923050.1 )

secretion system apparatus protein SsaV

NC_012751
(Candidatus Hamiltonella defensa T5A)

1e-161

42) A1122_03810
( YP_005520457.1 )

secretion system apparatus protein SsaV

NC_017168
(Yersinia pestis A1122)

2e-160

43) YPO0266
( YP_002345347.1 )

secretion system apparatus protein SsaV

NC_003143
(Yersinia pestis CO92)

2e-160

44) YPD4_0230
( YP_005503442.1 )

secretion system apparatus protein

NC_017154
(Yersinia pestis D106004)

2e-160

45) YPD8_0235
( YP_005507318.1 )

secretion system apparatus protein

NC_017160
(Yersinia pestis D182038)

2e-160

46) YPC_0742
( YP_005622728.1 )

secretion system apparatus protein

NC_017265
(Yersinia pestis Harbin 35)

2e-160

47) YPZ3_0228
( YP_003566400.1 )

secretion system apparatus protein

NC_014029
(Yersinia pestis Z176003)

2e-160

48) flhA1
( NP_991814.1 )

secretion system apparatus protein SsaV

NC_005810
(Yersinia pestis 91001)

2e-160

49) y0525
( NP_667862.1 )

secretion system apparatus protein SsaV

NC_004088
(Yersinia pestis KIM)

2e-160

50) YPA_4017
( YP_653923.1 )

secretion system apparatus protein SsaV

NC_008150
(Yersinia pestis Antiqua)

6e-160

51) YPDSF_3705
( YP_001165028.1 )

secretion system apparatus protein SsaV

NC_009381
(Yersinia pestis Pestoides F)

6e-160

52) YPTB0322
( YP_068868.1 )

secretion system apparatus protein SsaV

NC_006155
(Yersinia pseudotuberculosis IP 32953)

4e-159

53) YPTS_0346
( YP_001870792.1 )

secretion system apparatus protein SsaV

NC_010634
(Yersinia pseudotuberculosis PB1/+)

4e-159

54) YpsIP31758_3819
( YP_001402773.1 )

secretion system apparatus protein SsaV

NC_009708
(Yersinia pseudotuberculosis IP 31758)

1e-158

55) YPK_3907
( YP_001722625.1 )

secretion system apparatus protein SsaV

NC_010465
(Yersinia pseudotuberculosis YPIII)

1e-158

56) YE105_C0332
( YP_004296533.1 )

Secretion system apparatus protein ssaV

NC_015224
(Yersinia enterocolitica 105.5R(r))

4e-157

57) Y11_35391
( YP_006007038.1 )

type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV)

NC_017564
(Yersinia enterocolitica Y11)

1e-156

58) Sbal117_2085
( YP_006037316.1 )

type III secretion protein, HrcV family

NC_017579
(Shewanella baltica OS117)

1e-147

59) Sbal_1969
( YP_001050342.1 )

secretion system apparatus protein SsaV

NC_009052
(Shewanella baltica OS155)

1e-147

60) Sbal195_2273
( YP_001554701.1 )

secretion system apparatus protein SsaV

NC_009997
(Shewanella baltica OS195)

3e-147

61) Sbal678_2283
( YP_005273490.1 )

type III secretion protein, HrcV family

NC_016901
(Shewanella baltica OS678)

3e-147

62) Sbal175_2396
( YP_006020953.1 )

type III secretion protein, HrcV family

NC_017571
(Shewanella baltica BA175)

1e-145

63) SVI_2235
( YP_003556984.1 )

type III secretion system apparatus protein, HrcV family

NC_014012
(Shewanella violacea DSS12)

3e-138

64) NT01EI_0958
( YP_002932406.1 )

type III secretion protein, HrcV family

NC_012779
(Edwardsiella ictaluri 93-146)

3e-136

65) escV
( YP_003236089.1 )

putative translocator EscV

NC_013364
(Escherichia coli 11128)

3e-134

66) esaV
( YP_003294934.1 )

type III secretion protein, HrcV family

NC_013508
(Edwardsiella tarda EIB202)

6e-134

67) esaV
( YP_005698433.1 )

protein EsaV

NC_017309
(Edwardsiella tarda FL6-60)

6e-134

68) ETAC_04215
( YP_007628334.1 )

secretion system apparatus protein SsaV

NC_020796
(Edwardsiella tarda C07-087)

1e-133

69) escV
( YP_003366503.1 )

T3SS structural protein EscV

NC_013716
(Citrobacter rodentium ICC168)

1e-132

70) escV
( NP_902272.1 )

secretion system apparatus protein SsaV

NC_005085
(Chromobacterium violaceum ATCC 12472)

4e-131

71) escV
( YP_002331411.1 )

translocator EscV

NC_011601
(Escherichia coli E2348/69)

1e-130

72) escV
( YP_003223476.1 )

translocator EscV

NC_013353
(Escherichia coli 12009)

9e-131

73) escV
( YP_003232152.1 )

T3SS structure protein EscV

NC_013361
(Escherichia coli 11368)

2e-130

74) escV
( YP_003501875.1 )

escV

NC_013941
(Escherichia coli CB9615)

9e-124

75) ECH74115_5063
( YP_002273167.1 )

type III secretion protein, HrcV family

NC_011353
(Escherichia coli EC4115)

9e-124

76) escV
( NP_290269.1 )

hypothetical protein

NC_002655
(Escherichia coli EDL933)

9e-124

77) ECO55CA74_21230
( YP_006161351.1 )

escV

NC_017656
(Escherichia coli RM12579)

9e-124

78) ECs4569
( NP_312596.1 )

hypothetical protein

NC_002695
(Escherichia coli Sakai)

9e-124

79) escV
( YP_003080481.1 )

LEE-encoded type III secretion system factor

NC_013008
(Escherichia coli TW14359)

9e-124

80) CDCO157_4304
( YP_006315169.1 )

hypothetical protein

NC_017906
(Escherichia coli Xuzhou21)

9e-124

81) HCH_05101
( YP_436207.1 )

type III secretory pathway subunit EscV

NC_007645
(Hahella chejuensis KCTC 2396)

2e-109

82) bcrD
( YP_005590294.1 )

putative type III secretion pore protein

NC_017223
(Bordetella pertussis CS)

9e-101

83) bcrD
( NP_880904.1 )

type III secretion pore protein

NC_002929
(Bordetella pertussis Tohama I)

9e-101

84) bcrD
( YP_006899813.1 )

type III secretion pore protein

NC_018829
(Bordetella bronchiseptica MO149)

1e-100

85) bcrD
( YP_006625517.1 )

type III secretion pore protein

NC_018518
(Bordetella pertussis 18323)

1e-100

86) HCH_03273
( YP_434455.1 )

type III secretory pathway subunit EscV

NC_007645
(Hahella chejuensis KCTC 2396)

1e-100

87) bcrD
( YP_006895356.1 )

type III secretion pore protein

NC_018828
(Bordetella parapertussis Bpp5)

4e-100

88) bcrD
( NP_888157.1 )

type III secretion pore protein

NC_002927
(Bordetella bronchiseptica RB50)

6e-100

89) bcrD
( YP_006967908.1 )

type III secretion pore protein

NC_019382
(Bordetella bronchiseptica 253)

7e-100

90) Dvul_3008
( YP_961207.1 )

HrcV family type III secretion protein

NC_008741
(Desulfovibrio vulgaris DP4)

1e-99

91) DVUA0104
( YP_009144.1 )

type III secretion inner membrane protein HrcV family

NC_005863
(Desulfovibrio vulgaris Hildenborough)

1e-99

92) Deval_3200
( YP_005703979.1 )

type III secretion protein, HrcV family

NC_017311
(Desulfovibrio vulgaris RCH1)

1e-99

93) NH44784_014751
( YP_008028570.1 )

Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV

NC_021285
(Achromobacter xylosoxidans NH44784-1996)

4e-99

94) bcrD
( NP_884466.1 )

type III secretion pore protein

NC_002928
(Bordetella parapertussis 12822)

2e-97

95) lcrD
( YP_004677271.1 )

Low calcium response locus protein D

NC_015717
(Hyphomicrobium sp. MC1)

3e-97

96) DvMF_2415
( YP_002436824.1 )

type III secretion protein, HrcV family

NC_011769
(Desulfovibrio vulgaris Miyazaki F)

4e-95

97) yscV
( YP_005082203.1 )

Low calcium response locus protein D (LcrD)

NC_016642
(Pseudovibrio sp. FO-BEG1)

6e-94

• Sequence Alignments

1) ssaV in NC_016857


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  909 bits (3445),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 681/681 (100%), Positives = 681/681 (100%), Gaps = 0/681 (0%)

Query  27   MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  86
            MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL
Sbjct  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60

Query  87   LLIAIYLSDPLDLSVFPslllittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnl  146
            LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL
Sbjct  61   LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL  120

Query  147  tvglvvftiitivqfivitKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  206
            TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART
Sbjct  121  TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180

Query  207  LRQHVQQESRFLGAMDGAMKFVKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYS  266
            LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS
Sbjct  181  LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS  240

Query  267  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  326
            VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML
Sbjct  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300

Query  327  LALIPGFPfitlaffsallalpiiliRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  386
            LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT
Sbjct  301  LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360

Query  387  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  446
            LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY
Sbjct  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420

Query  447  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  506
            LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM
Sbjct  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480

Query  507  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  566
            GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL
Sbjct  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540

Query  567  IDWAPREKDVLMLTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGT  626
            IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT
Sbjct  541  IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600

Query  627  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  686
            YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE
Sbjct  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660

Query  687  SLIQVVESIDLSEEELADNEE  707
            SLIQVVESIDLSEEELADNEE
Sbjct  661  SLIQVVESIDLSEEELADNEE  681

2) SE451236_12935 in NC_021820


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  907 bits (3437),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 681/681 (100%), Positives = 681/681 (100%), Gaps = 0/681 (0%)

Query  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60
            MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL
Sbjct  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60

Query  61   LLIAIYLSDPLDLSVFPslllittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnl  120
            LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL
Sbjct  61   LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL  120

Query  121  tvglvvftiitivqfivitKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180
            TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART
Sbjct  121  TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180

Query  181  LRQHVQQESRFLGAMDGAMKFVKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYS  240
            LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS
Sbjct  181  LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS  240

Query  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300
            VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML
Sbjct  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300

Query  301  LALIPGFPfitlaffsallalpiiliRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360
            LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT
Sbjct  301  LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360

Query  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420
            LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY
Sbjct  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420

Query  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480
            LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM
Sbjct  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480

Query  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540
            GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL
Sbjct  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540

Query  541  IDWAPREKDVLMLTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600
            IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT
Sbjct  541  IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600

Query  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660
            YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE
Sbjct  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660

Query  661  SLIQVVESIDLSEEELADNEE  681
            SLIQVVESIDLSEEELADNEE
Sbjct  661  SLIQVVESIDLSEEELADNEE  681

3) SEEB0189_12465 in NC_021844


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  907 bits (3437),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 681/681 (100%), Positives = 681/681 (100%), Gaps = 0/681 (0%)

Query  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60
            MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL
Sbjct  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60

Query  61   LLIAIYLSDPLDLSVFPslllittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnl  120
            LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL
Sbjct  61   LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL  120

Query  121  tvglvvftiitivqfivitKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180
            TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART
Sbjct  121  TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180

Query  181  LRQHVQQESRFLGAMDGAMKFVKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYS  240
            LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS
Sbjct  181  LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS  240

Query  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300
            VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML
Sbjct  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300

Query  301  LALIPGFPfitlaffsallalpiiliRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360
            LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT
Sbjct  301  LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360

Query  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420
            LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY
Sbjct  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420

Query  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480
            LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM
Sbjct  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480

Query  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540
            GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL
Sbjct  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540

Query  541  IDWAPREKDVLMLTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600
            IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT
Sbjct  541  IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600

Query  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660
            YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE
Sbjct  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660

Query  661  SLIQVVESIDLSEEELADNEE  681
            SLIQVVESIDLSEEELADNEE
Sbjct  661  SLIQVVESIDLSEEELADNEE  681

4) SBOV14111 in NC_022241


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  907 bits (3437),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 681/681 (100%), Positives = 681/681 (100%), Gaps = 0/681 (0%)

Query  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60
            MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL
Sbjct  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60

Query  61   LLIAIYLSDPLDLSVFPslllittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnl  120
            LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL
Sbjct  61   LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL  120

Query  121  tvglvvftiitivqfivitKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180
            TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART
Sbjct  121  TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180

Query  181  LRQHVQQESRFLGAMDGAMKFVKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYS  240
            LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS
Sbjct  181  LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS  240

Query  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300
            VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML
Sbjct  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300

Query  301  LALIPGFPfitlaffsallalpiiliRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360
            LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT
Sbjct  301  LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360

Query  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420
            LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY
Sbjct  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420

Query  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480
            LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM
Sbjct  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480

Query  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540
            GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL
Sbjct  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540

Query  541  IDWAPREKDVLMLTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600
            IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT
Sbjct  541  IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600

Query  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660
            YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE
Sbjct  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660

Query  661  SLIQVVESIDLSEEELADNEE  681
            SLIQVVESIDLSEEELADNEE
Sbjct  661  SLIQVVESIDLSEEELADNEE  681

5) SeD_A1929 in NC_011205


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  907 bits (3437),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 681/681 (100%), Positives = 681/681 (100%), Gaps = 0/681 (0%)

Query  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60
            MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL
Sbjct  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60

Query  61   LLIAIYLSDPLDLSVFPslllittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnl  120
            LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL
Sbjct  61   LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL  120

Query  121  tvglvvftiitivqfivitKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180
            TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART
Sbjct  121  TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180

Query  181  LRQHVQQESRFLGAMDGAMKFVKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYS  240
            LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS
Sbjct  181  LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS  240

Query  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300
            VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML
Sbjct  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300

Query  301  LALIPGFPfitlaffsallalpiiliRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360
            LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT
Sbjct  301  LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360

Query  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420
            LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY
Sbjct  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420

Query  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480
            LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM
Sbjct  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480

Query  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540
            GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL
Sbjct  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540

Query  541  IDWAPREKDVLMLTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600
            IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT
Sbjct  541  IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600

Query  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660
            YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE
Sbjct  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660

Query  661  SLIQVVESIDLSEEELADNEE  681
            SLIQVVESIDLSEEELADNEE
Sbjct  661  SLIQVVESIDLSEEELADNEE  681

6) ssaV in NC_011294


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  907 bits (3437),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 681/681 (100%), Positives = 681/681 (100%), Gaps = 0/681 (0%)

Query  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60
            MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL
Sbjct  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60

Query  61   LLIAIYLSDPLDLSVFPslllittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnl  120
            LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL
Sbjct  61   LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL  120

Query  121  tvglvvftiitivqfivitKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180
            TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART
Sbjct  121  TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180

Query  181  LRQHVQQESRFLGAMDGAMKFVKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYS  240
            LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS
Sbjct  181  LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS  240

Query  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300
            VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML
Sbjct  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300

Query  301  LALIPGFPfitlaffsallalpiiliRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360
            LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT
Sbjct  301  LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360

Query  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420
            LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY
Sbjct  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420

Query  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480
            LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM
Sbjct  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480

Query  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540
            GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL
Sbjct  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540

Query  541  IDWAPREKDVLMLTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600
            IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT
Sbjct  541  IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600

Query  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660
            YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE
Sbjct  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660

Query  661  SLIQVVESIDLSEEELADNEE  681
            SLIQVVESIDLSEEELADNEE
Sbjct  661  SLIQVVESIDLSEEELADNEE  681

7) SEEH1578_16305 in NC_021810


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  907 bits (3437),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 681/681 (100%), Positives = 681/681 (100%), Gaps = 0/681 (0%)

Query  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60
            MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL
Sbjct  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60

Query  61   LLIAIYLSDPLDLSVFPslllittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnl  120
            LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL
Sbjct  61   LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL  120

Query  121  tvglvvftiitivqfivitKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180
            TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART
Sbjct  121  TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180

Query  181  LRQHVQQESRFLGAMDGAMKFVKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYS  240
            LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS
Sbjct  181  LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS  240

Query  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300
            VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML
Sbjct  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300

Query  301  LALIPGFPfitlaffsallalpiiliRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360
            LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT
Sbjct  301  LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360

Query  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420
            LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY
Sbjct  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420

Query  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480
            LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM
Sbjct  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480

Query  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540
            GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL
Sbjct  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540

Query  541  IDWAPREKDVLMLTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600
            IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT
Sbjct  541  IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600

Query  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660
            YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE
Sbjct  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660

Query  661  SLIQVVESIDLSEEELADNEE  681
            SLIQVVESIDLSEEELADNEE
Sbjct  661  SLIQVVESIDLSEEELADNEE  681

8) SU5_02030 in NC_017623


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  907 bits (3437),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 681/681 (100%), Positives = 681/681 (100%), Gaps = 0/681 (0%)

Query  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60
            MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL
Sbjct  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60

Query  61   LLIAIYLSDPLDLSVFPslllittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnl  120
            LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL
Sbjct  61   LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL  120

Query  121  tvglvvftiitivqfivitKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180
            TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART
Sbjct  121  TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180

Query  181  LRQHVQQESRFLGAMDGAMKFVKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYS  240
            LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS
Sbjct  181  LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS  240

Query  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300
            VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML
Sbjct  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300

Query  301  LALIPGFPfitlaffsallalpiiliRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360
            LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT
Sbjct  301  LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360

Query  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420
            LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY
Sbjct  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420

Query  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480
            LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM
Sbjct  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480

Query  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540
            GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL
Sbjct  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540

Query  541  IDWAPREKDVLMLTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600
            IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT
Sbjct  541  IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600

Query  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660
            YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE
Sbjct  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660

Query  661  SLIQVVESIDLSEEELADNEE  681
            SLIQVVESIDLSEEELADNEE
Sbjct  661  SLIQVVESIDLSEEELADNEE  681

9) CFSAN002069_01930 in NC_021812


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  907 bits (3437),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 681/681 (100%), Positives = 681/681 (100%), Gaps = 0/681 (0%)

Query  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60
            MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL
Sbjct  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60

Query  61   LLIAIYLSDPLDLSVFPslllittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnl  120
            LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL
Sbjct  61   LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL  120

Query  121  tvglvvftiitivqfivitKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180
            TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART
Sbjct  121  TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180

Query  181  LRQHVQQESRFLGAMDGAMKFVKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYS  240
            LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS
Sbjct  181  LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS  240

Query  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300
            VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML
Sbjct  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300

Query  301  LALIPGFPfitlaffsallalpiiliRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360
            LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT
Sbjct  301  LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360

Query  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420
            LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY
Sbjct  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420

Query  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480
            LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM
Sbjct  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480

Query  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540
            GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL
Sbjct  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540

Query  541  IDWAPREKDVLMLTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600
            IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT
Sbjct  541  IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600

Query  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660
            YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE
Sbjct  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660

Query  661  SLIQVVESIDLSEEELADNEE  681
            SLIQVVESIDLSEEELADNEE
Sbjct  661  SLIQVVESIDLSEEELADNEE  681

10) SeHA_C1547 in NC_011083


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  907 bits (3437),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 681/681 (100%), Positives = 681/681 (100%), Gaps = 0/681 (0%)

Query  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60
            MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL
Sbjct  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60

Query  61   LLIAIYLSDPLDLSVFPslllittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnl  120
            LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL
Sbjct  61   LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL  120

Query  121  tvglvvftiitivqfivitKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180
            TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART
Sbjct  121  TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180

Query  181  LRQHVQQESRFLGAMDGAMKFVKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYS  240
            LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS
Sbjct  181  LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS  240

Query  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300
            VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML
Sbjct  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300

Query  301  LALIPGFPfitlaffsallalpiiliRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360
            LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT
Sbjct  301  LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360

Query  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420
            LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY
Sbjct  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420

Query  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480
            LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM
Sbjct  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480

Query  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540
            GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL
Sbjct  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540

Query  541  IDWAPREKDVLMLTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600
            IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT
Sbjct  541  IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600

Query  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660
            YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE
Sbjct  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660

Query  661  SLIQVVESIDLSEEELADNEE  681
            SLIQVVESIDLSEEELADNEE
Sbjct  661  SLIQVVESIDLSEEELADNEE  681

11) SNSL254_A1525 in NC_011080


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  907 bits (3437),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 681/681 (100%), Positives = 681/681 (100%), Gaps = 0/681 (0%)

Query  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60
            MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL
Sbjct  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60

Query  61   LLIAIYLSDPLDLSVFPslllittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnl  120
            LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL
Sbjct  61   LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL  120

Query  121  tvglvvftiitivqfivitKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180
            TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART
Sbjct  121  TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180

Query  181  LRQHVQQESRFLGAMDGAMKFVKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYS  240
            LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS
Sbjct  181  LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS  240

Query  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300
            VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML
Sbjct  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300

Query  301  LALIPGFPfitlaffsallalpiiliRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360
            LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT
Sbjct  301  LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360

Query  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420
            LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY
Sbjct  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420

Query  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480
            LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM
Sbjct  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480

Query  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540
            GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL
Sbjct  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540

Query  541  IDWAPREKDVLMLTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600
            IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT
Sbjct  541  IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600

Query  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660
            YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE
Sbjct  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660

Query  661  SLIQVVESIDLSEEELADNEE  681
            SLIQVVESIDLSEEELADNEE
Sbjct  661  SLIQVVESIDLSEEELADNEE  681

12) SPAB_01911 in NC_010102


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  907 bits (3437),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 681/681 (100%), Positives = 681/681 (100%), Gaps = 0/681 (0%)

Query  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60
            MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL
Sbjct  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60

Query  61   LLIAIYLSDPLDLSVFPslllittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnl  120
            LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL
Sbjct  61   LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL  120

Query  121  tvglvvftiitivqfivitKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180
            TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART
Sbjct  121  TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180

Query  181  LRQHVQQESRFLGAMDGAMKFVKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYS  240
            LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS
Sbjct  181  LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS  240

Query  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300
            VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML
Sbjct  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300

Query  301  LALIPGFPfitlaffsallalpiiliRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360
            LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT
Sbjct  301  LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360

Query  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420
            LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY
Sbjct  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420

Query  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480
            LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM
Sbjct  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480

Query  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540
            GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL
Sbjct  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540

Query  541  IDWAPREKDVLMLTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600
            IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT
Sbjct  541  IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600

Query  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660
            YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE
Sbjct  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660

Query  661  SLIQVVESIDLSEEELADNEE  681
            SLIQVVESIDLSEEELADNEE
Sbjct  661  SLIQVVESIDLSEEELADNEE  681

13) ssaV in NC_016856


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  907 bits (3437),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 681/681 (100%), Positives = 681/681 (100%), Gaps = 0/681 (0%)

Query  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60
            MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL
Sbjct  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60

Query  61   LLIAIYLSDPLDLSVFPslllittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnl  120
            LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL
Sbjct  61   LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL  120

Query  121  tvglvvftiitivqfivitKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180
            TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART
Sbjct  121  TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180

Query  181  LRQHVQQESRFLGAMDGAMKFVKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYS  240
            LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS
Sbjct  181  LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS  240

Query  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300
            VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML
Sbjct  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300

Query  301  LALIPGFPfitlaffsallalpiiliRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360
            LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT
Sbjct  301  LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360

Query  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420
            LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY
Sbjct  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420

Query  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480
            LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM
Sbjct  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480

Query  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540
            GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL
Sbjct  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540

Query  541  IDWAPREKDVLMLTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600
            IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT
Sbjct  541  IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600

Query  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660
            YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE
Sbjct  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660

Query  661  SLIQVVESIDLSEEELADNEE  681
            SLIQVVESIDLSEEELADNEE
Sbjct  661  SLIQVVESIDLSEEELADNEE  681

14) STMMW_14191 in NC_016854


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  907 bits (3437),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 681/681 (100%), Positives = 681/681 (100%), Gaps = 0/681 (0%)

Query  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60
            MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL
Sbjct  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60

Query  61   LLIAIYLSDPLDLSVFPslllittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnl  120
            LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL
Sbjct  61   LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL  120

Query  121  tvglvvftiitivqfivitKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180
            TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART
Sbjct  121  TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180

Query  181  LRQHVQQESRFLGAMDGAMKFVKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYS  240
            LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS
Sbjct  181  LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS  240

Query  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300
            VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML
Sbjct  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300

Query  301  LALIPGFPfitlaffsallalpiiliRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360
            LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT
Sbjct  301  LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360

Query  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420
            LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY
Sbjct  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420

Query  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480
            LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM
Sbjct  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480

Query  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540
            GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL
Sbjct  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540

Query  541  IDWAPREKDVLMLTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600
            IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT
Sbjct  541  IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600

Query  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660
            YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE
Sbjct  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660

Query  661  SLIQVVESIDLSEEELADNEE  681
            SLIQVVESIDLSEEELADNEE
Sbjct  661  SLIQVVESIDLSEEELADNEE  681

15) ssaV in NC_003197


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  907 bits (3437),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 681/681 (100%), Positives = 681/681 (100%), Gaps = 0/681 (0%)

Query  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60
            MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL
Sbjct  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60

Query  61   LLIAIYLSDPLDLSVFPslllittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnl  120
            LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL
Sbjct  61   LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL  120

Query  121  tvglvvftiitivqfivitKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180
            TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART
Sbjct  121  TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180

Query  181  LRQHVQQESRFLGAMDGAMKFVKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYS  240
            LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS
Sbjct  181  LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS  240

Query  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300
            VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML
Sbjct  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300

Query  301  LALIPGFPfitlaffsallalpiiliRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360
            LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT
Sbjct  301  LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360

Query  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420
            LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY
Sbjct  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420

Query  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480
            LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM
Sbjct  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480

Query  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540
            GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL
Sbjct  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540

Query  541  IDWAPREKDVLMLTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600
            IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT
Sbjct  541  IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600

Query  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660
            YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE
Sbjct  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660

Query  661  SLIQVVESIDLSEEELADNEE  681
            SLIQVVESIDLSEEELADNEE
Sbjct  661  SLIQVVESIDLSEEELADNEE  681

16) ssaV in NC_016810


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  907 bits (3437),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 681/681 (100%), Positives = 681/681 (100%), Gaps = 0/681 (0%)

Query  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60
            MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL
Sbjct  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60

Query  61   LLIAIYLSDPLDLSVFPslllittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnl  120
            LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL
Sbjct  61   LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL  120

Query  121  tvglvvftiitivqfivitKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180
            TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART
Sbjct  121  TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180

Query  181  LRQHVQQESRFLGAMDGAMKFVKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYS  240
            LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS
Sbjct  181  LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS  240

Query  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300
            VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML
Sbjct  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300

Query  301  LALIPGFPfitlaffsallalpiiliRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360
            LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT
Sbjct  301  LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360

Query  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420
            LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY
Sbjct  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420

Query  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480
            LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM
Sbjct  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480

Query  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540
            GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL
Sbjct  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540

Query  541  IDWAPREKDVLMLTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600
            IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT
Sbjct  541  IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600

Query  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660
            YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE
Sbjct  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660

Query  661  SLIQVVESIDLSEEELADNEE  681
            SLIQVVESIDLSEEELADNEE
Sbjct  661  SLIQVVESIDLSEEELADNEE  681

17) STMDT12_C14300 in NC_016860


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  907 bits (3437),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 681/681 (100%), Positives = 681/681 (100%), Gaps = 0/681 (0%)

Query  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60
            MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL
Sbjct  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60

Query  61   LLIAIYLSDPLDLSVFPslllittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnl  120
            LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL
Sbjct  61   LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL  120

Query  121  tvglvvftiitivqfivitKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180
            TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART
Sbjct  121  TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180

Query  181  LRQHVQQESRFLGAMDGAMKFVKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYS  240
            LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS
Sbjct  181  LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS  240

Query  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300
            VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML
Sbjct  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300

Query  301  LALIPGFPfitlaffsallalpiiliRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360
            LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT
Sbjct  301  LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360

Query  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420
            LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY
Sbjct  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420

Query  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480
            LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM
Sbjct  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480

Query  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540
            GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL
Sbjct  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540

Query  541  IDWAPREKDVLMLTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600
            IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT
Sbjct  541  IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600

Query  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660
            YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE
Sbjct  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660

Query  661  SLIQVVESIDLSEEELADNEE  681
            SLIQVVESIDLSEEELADNEE
Sbjct  661  SLIQVVESIDLSEEELADNEE  681

18) STU288_03390 in NC_021151


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  907 bits (3437),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 681/681 (100%), Positives = 681/681 (100%), Gaps = 0/681 (0%)

Query  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60
            MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL
Sbjct  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60

Query  61   LLIAIYLSDPLDLSVFPslllittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnl  120
            LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL
Sbjct  61   LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL  120

Query  121  tvglvvftiitivqfivitKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180
            TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART
Sbjct  121  TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180

Query  181  LRQHVQQESRFLGAMDGAMKFVKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYS  240
            LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS
Sbjct  181  LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS  240

Query  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300
            VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML
Sbjct  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300

Query  301  LALIPGFPfitlaffsallalpiiliRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360
            LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT
Sbjct  301  LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360

Query  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420
            LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY
Sbjct  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420

Query  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480
            LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM
Sbjct  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480

Query  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540
            GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL
Sbjct  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540

Query  541  IDWAPREKDVLMLTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600
            IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT
Sbjct  541  IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600

Query  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660
            YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE
Sbjct  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660

Query  661  SLIQVVESIDLSEEELADNEE  681
            SLIQVVESIDLSEEELADNEE
Sbjct  661  SLIQVVESIDLSEEELADNEE  681

19) ssaV in NC_016863


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  907 bits (3437),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 681/681 (100%), Positives = 681/681 (100%), Gaps = 0/681 (0%)

Query  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60
            MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL
Sbjct  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60

Query  61   LLIAIYLSDPLDLSVFPslllittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnl  120
            LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL
Sbjct  61   LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL  120

Query  121  tvglvvftiitivqfivitKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180
            TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART
Sbjct  121  TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180

Query  181  LRQHVQQESRFLGAMDGAMKFVKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYS  240
            LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS
Sbjct  181  LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS  240

Query  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300
            VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML
Sbjct  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300

Query  301  LALIPGFPfitlaffsallalpiiliRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360
            LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT
Sbjct  301  LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360

Query  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420
            LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY
Sbjct  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420

Query  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480
            LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM
Sbjct  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480

Query  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540
            GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL
Sbjct  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540

Query  541  IDWAPREKDVLMLTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600
            IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT
Sbjct  541  IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600

Query  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660
            YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE
Sbjct  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660

Query  661  SLIQVVESIDLSEEELADNEE  681
            SLIQVVESIDLSEEELADNEE
Sbjct  661  SLIQVVESIDLSEEELADNEE  681

20) CFSAN001921_10075 in NC_021814


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  907 bits (3437),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 681/681 (100%), Positives = 681/681 (100%), Gaps = 0/681 (0%)

Query  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60
            MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL
Sbjct  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60

Query  61   LLIAIYLSDPLDLSVFPslllittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnl  120
            LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL
Sbjct  61   LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL  120

Query  121  tvglvvftiitivqfivitKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180
            TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART
Sbjct  121  TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180

Query  181  LRQHVQQESRFLGAMDGAMKFVKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYS  240
            LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS
Sbjct  181  LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS  240

Query  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300
            VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML
Sbjct  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300

Query  301  LALIPGFPfitlaffsallalpiiliRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360
            LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT
Sbjct  301  LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360

Query  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420
            LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY
Sbjct  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420

Query  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480
            LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM
Sbjct  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480

Query  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540
            GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL
Sbjct  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540

Query  541  IDWAPREKDVLMLTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600
            IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT
Sbjct  541  IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600

Query  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660
            YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE
Sbjct  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660

Query  661  SLIQVVESIDLSEEELADNEE  681
            SLIQVVESIDLSEEELADNEE
Sbjct  661  SLIQVVESIDLSEEELADNEE  681

21) ssaV in NC_006905


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  907 bits (3436),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 679/681 (99%), Positives = 681/681 (100%), Gaps = 0/681 (0%)

Query  1    MRSWLGEGIRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60
            MRSWLGEG+RAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL
Sbjct  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60

Query  61   LLIAIYLSDPLDLSVFPslllittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnl  120
            LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL
Sbjct  61   LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL  120

Query  121  tvglvvftiitivqfivitKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180
            TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART
Sbjct  121  TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180

Query  181  LRQHVQQESRFLGAMDGAMKFVKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYS  240
            LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS
Sbjct  181  LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS  240

Query  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300
            VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML
Sbjct  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300

Query  301  LALIPGFPfitlaffsallalpiiliRRKKSVVSANGVEAPEKDSMVPGACPLILRLTPT  360
            LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRL+PT
Sbjct  301  LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360

Query  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420
            LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY
Sbjct  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420

Query  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480
            LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM
Sbjct  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480

Query  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540
            GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL
Sbjct  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540

Query  541  IDWAPREKDVLMLTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600
            IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT
Sbjct  541  IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600

Query  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660
            YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE
Sbjct  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660

Query  661  SLIQVVESIDLSEEELADNEE  681
            SLIQVVESIDLSEEELADNEE
Sbjct  661  SLIQVVESIDLSEEELADNEE  681

22) CFSAN002050_13465 in NC_021818


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  907 bits (3434),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 677/681 (99%), Positives = 681/681 (100%), Gaps = 0/681 (0%)

Query  1    MRSWLGEGIRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60
            MRSWLGEG+RAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL
Sbjct  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60

Query  61   LLIAIYLSDPLDLSVFPslllittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnl  120
            LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL
Sbjct  61   LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL  120

Query  121  tvglvvftiitivqfivitKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180
            TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART
Sbjct  121  TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180

Query  181  LRQHVQQESRFLGAMDGAMKFVKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYS  240
            LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS
Sbjct  181  LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS  240

Query  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300
            VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML
Sbjct  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300

Query  301  LALIPGFPfitlaffsallalpiiliRRKKSVVSANGVEAPEKDSMVPGACPLILRLTPT  360
            LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRL+PT
Sbjct  301  LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360

Query  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420
            LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY
Sbjct  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420

Query  421  LLIGADASVVGDSQTLPNGMGQICWLTKEMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480
            LLIGADASVVGDSQTLPNGMGQICWLTK+MAHKAQGFGLDVFAGSQRISALLKCVLLRHM
Sbjct  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480

Query  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540
            GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL
Sbjct  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540

Query  541  IDWAPREKDVLMLTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600
            IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT
Sbjct  541  IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600

Query  601  YTALSSRHKTQILQLIEQALKQSTKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660
            YTALSSRHKTQILQLIEQALKQS+KLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE
Sbjct  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660

Query  661  SLIQVVESIDLSEEELADNEE  681
            SLIQVVESIDLSEEELADNEE
Sbjct  661  SLIQVVESIDLSEEELADNEE  681

23) SSPA1337 in NC_011147


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  907 bits (3436),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 678/681 (99%), Positives = 681/681 (100%), Gaps = 0/681 (0%)

Query  1    MRSWLGEGIRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60
            MRSWLGEG+RAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL
Sbjct  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60

Query  61   LLIAIYLSDPLDLSVFPslllittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnl  120
            LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL
Sbjct  61   LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL  120

Query  121  tvglvvftiitivqfivitKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180
            TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART
Sbjct  121  TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180

Query  181  LRQHVQQESRFLGAMDGAMKFVKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYS  240
            LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS
Sbjct  181  LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS  240

Query  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300
            VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML
Sbjct  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300

Query  301  LALIPGFPfitfaffsallalpiiliRRKKSVVSANGVEAPEKDSMVPGACPLILRLTPT  360
            LALIPGFPFIT+AFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRL+PT
Sbjct  301  LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360

Query  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420
            LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY
Sbjct  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420

Query  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480
            LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM
Sbjct  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480

Query  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540
            GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL
Sbjct  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540

Query  541  IDWAPREKDVLMLTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600
            IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT
Sbjct  541  IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600

Query  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660
            YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE
Sbjct  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660

Query  661  SLIQVVESIDLSEEELADNEE  681
            SLIQVVESIDLSEEELADNEE
Sbjct  661  SLIQVVESIDLSEEELADNEE  681

24) ssaV in NC_006511


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  907 bits (3436),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 678/681 (99%), Positives = 681/681 (100%), Gaps = 0/681 (0%)

Query  1    MRSWLGEGIRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60
            MRSWLGEG+RAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL
Sbjct  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60

Query  61   LLIAIYLSDPLDLSVFPslllittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnl  120
            LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL
Sbjct  61   LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL  120

Query  121  tvglvvftiitivqfivitKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180
            TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART
Sbjct  121  TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180

Query  181  LRQHVQQESRFLGAMDGAMKFVKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYS  240
            LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS
Sbjct  181  LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS  240

Query  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300
            VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML
Sbjct  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300

Query  301  LALIPGFPfitfaffsallalpiiliRRKKSVVSANGVEAPEKDSMVPGACPLILRLTPT  360
            LALIPGFPFIT+AFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRL+PT
Sbjct  301  LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360

Query  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420
            LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY
Sbjct  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420

Query  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480
            LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM
Sbjct  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480

Query  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540
            GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL
Sbjct  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540

Query  541  IDWAPREKDVLMLTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600
            IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT
Sbjct  541  IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600

Query  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660
            YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE
Sbjct  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660

Query  661  SLIQVVESIDLSEEELADNEE  681
            SLIQVVESIDLSEEELADNEE
Sbjct  661  SLIQVVESIDLSEEELADNEE  681

25) SeSA_A1510 in NC_011094


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  907 bits (3436),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 679/681 (99%), Positives = 681/681 (100%), Gaps = 0/681 (0%)

Query  1    MRSWLGEGIRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60
            MRSWLGEG+RAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL
Sbjct  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60

Query  61   LLIAIYLSDPLDLSVFPslllittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnl  120
            LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL
Sbjct  61   LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL  120

Query  121  tvglvvftiitivqfivitKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180
            TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART
Sbjct  121  TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180

Query  181  LRQHVQQESRFLGAMDGAMKFVKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYS  240
            LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS
Sbjct  181  LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS  240

Query  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300
            VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML
Sbjct  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300

Query  301  LALIPGFPfitlaffsallalpiiliRRKKSVVSANGVEAPEKDSMVPGACPLILRLTPT  360
            LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRL+PT
Sbjct  301  LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360

Query  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420
            LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY
Sbjct  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420

Query  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480
            LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM
Sbjct  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480

Query  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540
            GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL
Sbjct  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540

Query  541  IDWAPREKDVLMLTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600
            IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT
Sbjct  541  IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600

Query  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660
            YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE
Sbjct  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660

Query  661  SLIQVVESIDLSEEELADNEE  681
            SLIQVVESIDLSEEELADNEE
Sbjct  661  SLIQVVESIDLSEEELADNEE  681

26) SeAg_B1759 in NC_011149


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  906 bits (3432),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 677/681 (99%), Positives = 681/681 (100%), Gaps = 0/681 (0%)

Query  1    MRSWLGEGIRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60
            MRSWLGEG+RAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL
Sbjct  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60

Query  61   LLIAIYLSDPLDLSVFPslllittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnl  120
            LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL
Sbjct  61   LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL  120

Query  121  tvglvvftiitivqfivitKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180
            TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART
Sbjct  121  TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180

Query  181  LRQHVQQESRFLGAMDGAMKFVKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYS  240
            LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS
Sbjct  181  LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS  240

Query  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300
            VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML
Sbjct  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300

Query  301  LALIPGFPfitlaffsallalpiiliRRKKSVVSANGVEAPEKDSMVPGACPLILRLTPT  360
            LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRL+PT
Sbjct  301  LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360

Query  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420
            LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY
Sbjct  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420

Query  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCILLRHM  480
            LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKC+LLRHM
Sbjct  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480

Query  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540
            GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL
Sbjct  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540

Query  541  IDWAPREKDVLMLTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600
            IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT
Sbjct  541  IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600

Query  601  YTALSSRHKTQILQLIEQALKQSTKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660
            YTALSSRHKTQILQLIEQALKQS+KLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE
Sbjct  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660

Query  661  SLIQVVESIDLSEEELADNEE  681
            SLIQVVESIDLSEEELADNEE
Sbjct  661  SLIQVVESIDLSEEELADNEE  681

27) ssaV in NC_011274


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  906 bits (3433),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 680/681 (99%), Positives = 680/681 (99%), Gaps = 0/681 (0%)

Query  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60
            MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL
Sbjct  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60

Query  61   LLIAIYLSDPLDLSVFPslllittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnl  120
            LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL
Sbjct  61   LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL  120

Query  121  tvglvvftiitivqfivitKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180
            TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART
Sbjct  121  TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180

Query  181  LRQHVQQESRFLGAMDGAMKFVKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYS  240
            LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS
Sbjct  181  LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS  240

Query  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300
            VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML
Sbjct  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300

Query  301  LALIPGFPfitlaffsallalpiiliRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360
            LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT
Sbjct  301  LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360

Query  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420
            LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY
Sbjct  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420

Query  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480
            LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM
Sbjct  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480

Query  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540
            GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL
Sbjct  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540

Query  541  IDWAPREKDVLMLTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTVMGT  600
            IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQT MGT
Sbjct  541  IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600

Query  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660
            YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE
Sbjct  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660

Query  661  SLIQVVESIDLSEEELADNEE  681
            SLIQVVESIDLSEEELADNEE
Sbjct  661  SLIQVVESIDLSEEELADNEE  681

28) ssaV in NC_022221


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  906 bits (3433),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 680/681 (99%), Positives = 680/681 (99%), Gaps = 0/681 (0%)

Query  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60
            MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL
Sbjct  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60

Query  61   LLIAIYLSDPLDLSVFPslllittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnl  120
            LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL
Sbjct  61   LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL  120

Query  121  tvglvvftiitivqfivitKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180
            TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART
Sbjct  121  TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180

Query  181  LRQHVQQESRFLGAMDGAMKFVKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYS  240
            LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS
Sbjct  181  LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS  240

Query  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300
            VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML
Sbjct  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300

Query  301  LALIPGFPfitlaffsallalpiiliRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360
            LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT
Sbjct  301  LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360

Query  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420
            LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY
Sbjct  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420

Query  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480
            LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM
Sbjct  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480

Query  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540
            GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL
Sbjct  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540

Query  541  IDWAPREKDVLMLTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTVMGT  600
            IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQT MGT
Sbjct  541  IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600

Query  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660
            YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE
Sbjct  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660

Query  661  SLIQVVESIDLSEEELADNEE  681
            SLIQVVESIDLSEEELADNEE
Sbjct  661  SLIQVVESIDLSEEELADNEE  681

29) ssaV in NC_016831


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  906 bits (3433),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 680/681 (99%), Positives = 680/681 (99%), Gaps = 0/681 (0%)

Query  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60
            MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL
Sbjct  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60

Query  61   LLIAIYLSDPLDLSVFPslllittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnl  120
            LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL
Sbjct  61   LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL  120

Query  121  tvglvvftiitivqfivitKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180
            TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART
Sbjct  121  TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180

Query  181  LRQHVQQESRFLGAMDGAMKFVKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYS  240
            LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS
Sbjct  181  LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS  240

Query  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300
            VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML
Sbjct  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300

Query  301  LALIPGFPfitlaffsallalpiiliRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360
            LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT
Sbjct  301  LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360

Query  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420
            LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY
Sbjct  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420

Query  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480
            LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM
Sbjct  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480

Query  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540
            GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL
Sbjct  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540

Query  541  IDWAPREKDVLMLTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTVMGT  600
            IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQT MGT
Sbjct  541  IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600

Query  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660
            YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE
Sbjct  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660

Query  661  SLIQVVESIDLSEEELADNEE  681
            SLIQVVESIDLSEEELADNEE
Sbjct  661  SLIQVVESIDLSEEELADNEE  681

30) CFSAN001992_04520 in NC_020307


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  906 bits (3433),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 678/681 (99%), Positives = 680/681 (99%), Gaps = 0/681 (0%)

Query  1    MRSWLGEGTRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60
            MRSWLGEG RAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL
Sbjct  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60

Query  61   LLIAIYLSDPLDLSVFPslllittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnl  120
            LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL
Sbjct  61   LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL  120

Query  121  tvglvvftiitivqfivitKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARA  180
            TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHAR+
Sbjct  121  TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180

Query  181  LRQHVQQESRFLGAMDGAMKFVKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYS  240
            LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS
Sbjct  181  LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS  240

Query  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300
            VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML
Sbjct  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300

Query  301  LALIPGFPfitlaffsallalpiiliRRKKSVVSANGVEAPEKDSMVPGACPLILRLTPT  360
            LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRL+PT
Sbjct  301  LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360

Query  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420
            LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY
Sbjct  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420

Query  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480
            LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM
Sbjct  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480

Query  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540
            GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL
Sbjct  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540

Query  541  IDWAPREKDVLMLTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600
            IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT
Sbjct  541  IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600

Query  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660
            YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE
Sbjct  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660

Query  661  SLIQVVESIDLSEEELADNEE  681
            SLIQVVESIDLSEEELADNEE
Sbjct  661  SLIQVVESIDLSEEELADNEE  681

31) I137_05675 in NC_021984


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  906 bits (3433),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 680/681 (99%), Positives = 680/681 (99%), Gaps = 0/681 (0%)

Query  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60
            MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL
Sbjct  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60

Query  61   LLIAIYLSDPLDLSVFPslllittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnl  120
            LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL
Sbjct  61   LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL  120

Query  121  tvglvvftiitivqfivitKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180
            TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART
Sbjct  121  TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180

Query  181  LRQHVQQESRFLGAMDGAMKFVKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYS  240
            LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS
Sbjct  181  LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS  240

Query  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300
            VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML
Sbjct  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300

Query  301  LALIPGFPfitlaffsallalpiiliRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360
            LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT
Sbjct  301  LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360

Query  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420
            LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY
Sbjct  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420

Query  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480
            LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM
Sbjct  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480

Query  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540
            GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL
Sbjct  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540

Query  541  IDWAPREKDVLMLTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTVMGT  600
            IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQT MGT
Sbjct  541  IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600

Query  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660
            YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE
Sbjct  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660

Query  661  SLIQVVESIDLSEEELADNEE  681
            SLIQVVESIDLSEEELADNEE
Sbjct  661  SLIQVVESIDLSEEELADNEE  681

32) ssaV in NC_003198


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  892 bits (3380),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 676/681 (99%), Positives = 680/681 (99%), Gaps = 0/681 (0%)

Query  1    MRSWLGEGIRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSvil  60
            MRSWLGEG+RAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL
Sbjct  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60

Query  61   lliviYLSDPLDLSVFPslllittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnl  120
            LLI IYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL
Sbjct  61   LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL  120

Query  121  tvglvvftiitivqfivitKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180
            TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART
Sbjct  121  TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180

Query  181  LRQHVQQESRFLGAMDGAMKFVKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYS  240
            LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS
Sbjct  181  LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS  240

Query  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300
            VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML
Sbjct  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300

Query  301  LALIPGFPfitlaffsallalpiiliRRKKSVVSANGIEAPEKDSMVPGACPLILRLTPT  360
            LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANG+EAPEKDSMVPGACPLILRL+PT
Sbjct  301  LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360

Query  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420
            LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY
Sbjct  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420

Query  421  LLIGADASVVGDSQTLPNGMGQICWLSKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480
            LLIGADASVVGDSQTLPNGMGQICWL+KDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM
Sbjct  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480

Query  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540
            GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL
Sbjct  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540

Query  541  IDWAPREKDVLMLTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600
            IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT
Sbjct  541  IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600

Query  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660
            YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE
Sbjct  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660

Query  661  SLIQVVESIDLSEEELADNEE  681
            SLIQVVESIDLSEEELADNEE
Sbjct  661  SLIQVVESIDLSEEELADNEE  681

33) STBHUCCB_13720 in NC_016832


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  892 bits (3380),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 676/681 (99%), Positives = 680/681 (99%), Gaps = 0/681 (0%)

Query  1    MRSWLGEGIRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSvil  60
            MRSWLGEG+RAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL
Sbjct  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60

Query  61   lliviYLSDPLDLSVFPslllittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnl  120
            LLI IYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL
Sbjct  61   LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL  120

Query  121  tvglvvftiitivqfivitKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180
            TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART
Sbjct  121  TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180

Query  181  LRQHVQQESRFLGAMDGAMKFVKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYS  240
            LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS
Sbjct  181  LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS  240

Query  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300
            VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML
Sbjct  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300

Query  301  LALIPGFPfitlaffsallalpiiliRRKKSVVSANGIEAPEKDSMVPGACPLILRLTPT  360
            LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANG+EAPEKDSMVPGACPLILRL+PT
Sbjct  301  LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360

Query  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420
            LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY
Sbjct  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420

Query  421  LLIGADASVVGDSQTLPNGMGQICWLSKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480
            LLIGADASVVGDSQTLPNGMGQICWL+KDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM
Sbjct  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480

Query  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540
            GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL
Sbjct  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540

Query  541  IDWAPREKDVLMLTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600
            IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT
Sbjct  541  IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600

Query  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660
            YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE
Sbjct  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660

Query  661  SLIQVVESIDLSEEELADNEE  681
            SLIQVVESIDLSEEELADNEE
Sbjct  661  SLIQVVESIDLSEEELADNEE  681

34) TY21A_06515 in NC_021176


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  892 bits (3380),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 676/681 (99%), Positives = 680/681 (99%), Gaps = 0/681 (0%)

Query  1    MRSWLGEGIRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSvil  60
            MRSWLGEG+RAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL
Sbjct  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60

Query  61   lliviYLSDPLDLSVFPslllittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnl  120
            LLI IYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL
Sbjct  61   LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL  120

Query  121  tvglvvftiitivqfivitKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180
            TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART
Sbjct  121  TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180

Query  181  LRQHVQQESRFLGAMDGAMKFVKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYS  240
            LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS
Sbjct  181  LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS  240

Query  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300
            VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML
Sbjct  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300

Query  301  LALIPGFPfitlaffsallalpiiliRRKKSVVSANGIEAPEKDSMVPGACPLILRLTPT  360
            LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANG+EAPEKDSMVPGACPLILRL+PT
Sbjct  301  LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360

Query  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420
            LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY
Sbjct  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420

Query  421  LLIGADASVVGDSQTLPNGMGQICWLSKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480
            LLIGADASVVGDSQTLPNGMGQICWL+KDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM
Sbjct  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480

Query  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540
            GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL
Sbjct  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540

Query  541  IDWAPREKDVLMLTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600
            IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT
Sbjct  541  IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600

Query  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660
            YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE
Sbjct  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660

Query  661  SLIQVVESIDLSEEELADNEE  681
            SLIQVVESIDLSEEELADNEE
Sbjct  661  SLIQVVESIDLSEEELADNEE  681

35) ssaV in NC_004631


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  892 bits (3380),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 676/681 (99%), Positives = 680/681 (99%), Gaps = 0/681 (0%)

Query  1    MRSWLGEGIRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSvil  60
            MRSWLGEG+RAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL
Sbjct  1    MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVIL  60

Query  61   lliviYLSDPLDLSVFPslllittlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnl  120
            LLI IYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL
Sbjct  61   LLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNL  120

Query  121  tvglvvftiitivqfivitKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180
            TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART
Sbjct  121  TVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHART  180

Query  181  LRQHVQQESRFLGAMDGAMKFVKGDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYS  240
            LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS
Sbjct  181  LRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYS  240

Query  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300
            VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML
Sbjct  241  VLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLML  300

Query  301  LALIPGFPfitlaffsallalpiiliRRKKSVVSANGIEAPEKDSMVPGACPLILRLTPT  360
            LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANG+EAPEKDSMVPGACPLILRL+PT
Sbjct  301  LALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPT  360

Query  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420
            LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY
Sbjct  361  LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADY  420

Query  421  LLIGADASVVGDSQTLPNGMGQICWLSKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480
            LLIGADASVVGDSQTLPNGMGQICWL+KDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM
Sbjct  421  LLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHM  480

Query  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540
            GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL
Sbjct  481  GEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTL  540

Query  541  IDWAPREKDVLMLTEYVrialrrhilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600
            IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT
Sbjct  541  IDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGT  600

Query  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660
            YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE
Sbjct  601  YTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE  660

Query  661  SLIQVVESIDLSEEELADNEE  681
            SLIQVVESIDLSEEELADNEE
Sbjct  661  SLIQVVESIDLSEEELADNEE  681

36) SN31241_24840 in NC_021902


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  865 bits (3276),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 658/658 (100%), Positives = 658/658 (100%), Gaps = 0/658 (0%)

Query  1    MVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPslllit  60
            MVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPSLLLIT
Sbjct  24   MVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPSLLLIT  83

Query  61   tlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnltvglvvftiitivqfivitKGIE  120
            TLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVITKGIE
Sbjct  84   TLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVITKGIE  143

Query  121  RVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKFVK  180
            RVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKFVK
Sbjct  144  RVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKFVK  203

Query  181  GDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSAGI  240
            GDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSAGI
Sbjct  204  GDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSAGI  263

Query  241  IVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPfitlaffsallalpi  300
            IVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAFFSALLALPI
Sbjct  264  IVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAFFSALLALPI  323

Query  301  iliRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMRWFLFEDTGV  360
            ILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMRWFLFEDTGV
Sbjct  324  ILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMRWFLFEDTGV  383

Query  361  PLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMGQI  420
            PLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMGQI
Sbjct  384  PLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMGQI  443

Query  421  CWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSEL  480
            CWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSEL
Sbjct  444  CWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSEL  503

Query  481  VKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVrialrr  540
            VKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRR
Sbjct  504  VKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRR  563

Query  541  hilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQS  600
            HILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQS
Sbjct  564  HILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQS  623

Query  601  AKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESIDLSEEELADNEE  658
            AKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESIDLSEEELADNEE
Sbjct  624  AKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESIDLSEEELADNEE  681

37) ssaV in NC_017046


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  865 bits (3276),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 658/658 (100%), Positives = 658/658 (100%), Gaps = 0/658 (0%)

Query  1    MVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPslllit  60
            MVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPSLLLIT
Sbjct  24   MVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPSLLLIT  83

Query  61   tlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnltvglvvftiitivqfivitKGIE  120
            TLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVITKGIE
Sbjct  84   TLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVITKGIE  143

Query  121  RVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKFVK  180
            RVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKFVK
Sbjct  144  RVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKFVK  203

Query  181  GDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSAGI  240
            GDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSAGI
Sbjct  204  GDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSAGI  263

Query  241  IVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPfitlaffsallalpi  300
            IVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAFFSALLALPI
Sbjct  264  IVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAFFSALLALPI  323

Query  301  iliRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMRWFLFEDTGV  360
            ILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMRWFLFEDTGV
Sbjct  324  ILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMRWFLFEDTGV  383

Query  361  PLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMGQI  420
            PLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMGQI
Sbjct  384  PLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMGQI  443

Query  421  CWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSEL  480
            CWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSEL
Sbjct  444  CWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSEL  503

Query  481  VKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVrialrr  540
            VKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRR
Sbjct  504  VKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRR  563

Query  541  hilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQS  600
            HILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQS
Sbjct  564  HILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQS  623

Query  601  AKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESIDLSEEELADNEE  658
            AKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESIDLSEEELADNEE
Sbjct  624  AKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESIDLSEEELADNEE  681

38) ssaV in NC_012125


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  865 bits (3275),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 657/658 (99%), Positives = 658/658 (100%), Gaps = 0/658 (0%)

Query  1    MVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPslllit  60
            MVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPSLLLIT
Sbjct  24   MVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPSLLLIT  83

Query  61   tlyrlsltistsrlvllQHNAGNIVDAFGKfvvggnltvglvvftiitivqfivitKGIE  120
            TLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVITKGIE
Sbjct  84   TLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVITKGIE  143

Query  121  RVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKFVK  180
            RVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKFVK
Sbjct  144  RVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKFVK  203

Query  181  GDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSAGI  240
            GDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSAGI
Sbjct  204  GDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSAGI  263

Query  241  IVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPfitlaffsallalpi  300
            IVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAFFSALLALPI
Sbjct  264  IVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAFFSALLALPI  323

Query  301  iliRRKKSVVSANGVEAPEKDSMVPGACPLILRLTPTLHSADLIRDIDAMRWFLFEDTGV  360
            ILIRRKKSVVSANGVEAPEKDSMVPGACPLILRL+PTLHSADLIRDIDAMRWFLFEDTGV
Sbjct  324  ILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMRWFLFEDTGV  383

Query  361  PLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMGQI  420
            PLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMGQI
Sbjct  384  PLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMGQI  443

Query  421  CWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSEL  480
            CWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSEL
Sbjct  444  CWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSEL  503

Query  481  VKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVrialrr  540
            VKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRR
Sbjct  504  VKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRR  563

Query  541  hilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQS  600
            HILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQS
Sbjct  564  HILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQS  623

Query  601  AKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESIDLSEEELADNEE  658
            AKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESIDLSEEELADNEE
Sbjct  624  AKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESIDLSEEELADNEE  681

39) SARI_01568 in NC_010067


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  837 bits (3170),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 635/658 (97%), Positives = 652/658 (99%), Gaps = 0/658 (0%)

Query  1    MVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPslllit  60
            MVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPSLLLIT
Sbjct  24   MVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPSLLLIT  83

Query  61   tlyrlsltistsrlvllQHNAGNIVDAFGRfvvggnltvglvvftiitivqfivitKGIE  120
            TLYRLSLTISTSRLVLLQHNAGNIVDAFG+FVVGGNLTVGLVVFTIITIVQFIVITKGIE
Sbjct  84   TLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVITKGIE  143

Query  121  RVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKFVK  180
            RVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKFVK
Sbjct  144  RVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKFVK  203

Query  181  GDTiagiivvlvniiggiiiaivQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSAGI  240
            GDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSAGI
Sbjct  204  GDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSAGI  263

Query  241  IVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLAFIPGfpfiilaffsallalpi  300
            IVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLA+IPGFPFI LAFFSALLALPI
Sbjct  264  IVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAFFSALLALPI  323

Query  301  iliRRKKAVVSVSGAEAQEKDSMVPGACPLILRLTPTLHSADLIRDIDAMRWLVFEDTGV  360
            ILIRRKK+VVS +G EA EKDSMVPGACPLILRL+PTLHSADLIRDIDAMRW++FEDTGV
Sbjct  324  ILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMRWFLFEDTGV  383

Query  361  PLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPTQADYLLIGADASVVGESQTLPNGMGQI  420
            PLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIP+QADYLLIGADASVVG+SQTLPNGMGQI
Sbjct  384  PLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMGQI  443

Query  421  CWLSKDMGNKAQGFGLEVFAGSQRISALLKCALLRHMGEFIGVQETRYLMNAMEKNYSEL  480
            CWL+KDM++KAQGFGL+VFAGSQRISALLKC LLRHMGEFIGVQETRYLMNAMEKNYSEL
Sbjct  444  CWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSEL  503

Query  481  VKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVrialrr  540
            VKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRR
Sbjct  504  VKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRR  563

Query  541  hilrrlNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKSQILQLIEQALKRS  600
            HILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHK+QILQLIEQALK+S
Sbjct  564  HILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQS  623

Query  601  AKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEECFVQVVESIDLSEEELADNEE  658
            AKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEE ++QVVESIDLSEEELADNEE
Sbjct  624  AKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESIDLSEEELADNEE  681

40) SG1300 in NC_007712


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  615 bits (2322),  Expect = 3e-177, Method: Compositional matrix adjust.
 Identities = 469/682 (69%), Positives = 585/682 (86%), Gaps = 8/682 (1%)

Query  7    NWLTQ----NRWLAACRGRQDiilalmlliaivmivlplpTFVVDILIAINITFSVILLL  62
            +WL +    ++WL+ C GRQD++LA +LLIAIVM++LPLPT +VDILI+IN+ FSVILLL
Sbjct  3    SWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLL  62

Query  63   IAIYINDPLDLSVFPSlllittlyrlsltisttrlvllQHNAGSIVDAFGRFVVGGNLTV  122
            IAIY++DPLDLSVFPSLLLITTLYRLSLTIST+RLVLLQHNAG+IVDAFG+FVVGGNLTV
Sbjct  63   IAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTV  122

Query  123  GLviffiitivqfivitKGTERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDavqarqqr  182
            GLV+F IITIVQFIVITKG ERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDA +AR  R
Sbjct  123  GLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLR  182

Query  183  qlvqqESRFLGAMDGAMKFVKGDAiagiivvlvniiggiiigivqggmsigQAMQTYSVL  242
            Q VQQESRFLGAMDGAMKFVKGD+IAGIIVVLVNIIGGIII+IVQ +MS+++A++TYSVL
Sbjct  183  QHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVL  242

Query  243  SIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLAGEVSTQLGKQPQALMLTAVILLLFA  302
            SIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLA E+S+Q+++QPQ+L+LTAV+L+L+A
Sbjct  243  SIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLA  302

Query  303  LIPGFPFIDffllallsalPCGLIWHRLRRASGVGPAAQTESTDDVMRPGACPLMLRISP  362
            LIPGFPFI + +++ L ALP  LI+   R+ S V++ +   +  D M PGACPL+LR+SP
Sbjct  303  LIPGFPFITLAFFSALLALPIILIR---RKKSVVSANGVEAPEKDSMVPGACPLILRLSP  359

Query  363  SLNTASLTQEIDALRWSLFESYGVPLPEITVMVEPAQQAPAMTLLLYQEPVFSQVLPDKG  422
            +L++A L ++IDA+RW LFE  GVPLPE+ + V P + +  +T+LLYQEPVFS  +P ++
Sbjct  360  TLHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLP-EPTEKLTVLLYQEPVFSLSIPAQA  418

Query  423  FCLAFGVADDLGGERVTLPDGMGQITWLPAERAALARDRGLTVIAQKNCLSALLRRVLVR  482
              L +G    + G+  TLP+GMGQI WL  + A  A++ GL V+A  + +SALL+ VL+R
Sbjct  419  DYLLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLR  478

Query  483  YMAEFIGVQEARYLMDAMEAHYAELVKELQRQLPISKITETLQRLVAEGVSIRDLRLIFG  542
             M+EFIGVQE+RYLM+AME +Y+ELVKELQRQLPI+KI+ETLQRLV+E VSIRDLRLIFG
Sbjct  479  HMGEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFG  538

Query  543  TLIEWAPREKDVLMLTEYVRIALRRHLLQRLKPLGDPLPVVRIGEGIENLIRESIRQTAV  602
            TLI+WAPREKDVLMLTEYVRIALRRH+L+RL+P G PLP++RIGEGIENL+RESIRQTA+
Sbjct  539  TLIDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAM  598

Query  603  GTYAALSPAQNQRILTLIAEALAPLGEVCVVTSVDARRFLRRLIETLRHDIAVMSWQELG  662
            GTY+ALS+ ++ +IL LI +AL   + + +VTSVD+RRFLR++ E+   D++++SWQELG
Sbjct  599  GTYTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELG  658

Query  663  AECAIQVLATLDLGTEELADDD  684
             E  IQV+ ++DL+ EELAD++
Sbjct  659  EESLIQVVESIDLSEEELADNE  680

41) ssaV in NC_012751


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  563 bits (2124),  Expect = 1e-161, Method: Compositional matrix adjust.
 Identities = 365/667 (55%), Positives = 543/667 (82%), Gaps = 11/667 (1%)

Query  17   ERQDIFLAVMLLVAIFMMILPLPTELIDVLIAVNLGLSAILLMISIYIRDPLEFSVFPSl  76
             RQD+ LA +LL+AI MM+LPLPT ++D+LI++NL +S ILL+I+IY+ DPL++SVFPSL
Sbjct  20   GRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPSL  79

Query  77   llittlyrlaltISTSRLVLLQHDAGEIVEAFGQFVVGGNLTVGLIIFSIITVVQFIVIT  136
            LLITTLYRL+LTISTSRLVLLQH+AG+IV+AFG+FVVGGNLTVGL++F+IIT+VQFIVIT
Sbjct  80   LLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVIT  139

Query  137  KGSERVAEVSARFSLDGMPGKQMSIDGDLRSGSIDSAEAGRQRERVQKESRLFGAMDGAM  196
            KG ERVAEVSARFSLDGMPGKQMSIDGDLR+G ID+ +A   R++VQ+ESR++GAMDGAM
Sbjct  140  KGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAM  199

Query  197  KFVKGDaiasiivilvniiggisvgvFQHQMSASEALQTYAVLSVGDGLASQIPSLLISI  256
            KFVKGD+IA+IIV+LVNIIGGI +++ Q +MS SEA++TY+VLS+GDGL +QIPSLLIS+
Sbjct  200  KFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISL  259

Query  257  TAGIVVTRVPGKERKSLANELANQVGRQPEALWMAGGILLVFALIPGFPFFVFALLASLV  316
            +AGI+VTRVPG  R++LA EL++Q++RQP++L +++ +L+++ALIPGFPF+ +A++++L+
Sbjct  260  SAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAFFSALL  319

Query  317  ASPAFLVYRKKKKLGQSESMGLNADGEPQNEMKPGAVPLLLHCAPNLNRSNLKTEIDSLR  376
            A P +L+ R+KK +  ++++    ++  ++ M PGA PL+L+ +P L+ ++L  +ID++R
Sbjct  320  ALPIILI-RRKKSVVSANGV----EAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMR  374

Query  377  LRLFEHLGLPVPEVVVHINQQLEKNGLSISVYQervlelvlaenel-lieRPHAELTVRH  435
              LFE+ G+P+PEV +++  +   + L++ +YQE V+ L ++ +   L+  ++A +    
Sbjct  375  WFLFEDTGVPLPEVNIEVLPE-PTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVGDS  433

Query  436  QNLSRRMGELYWISSD--QKSQAISLKITFFEGDERIIQCLNYVFERHSSEFIGVQETRY  493
            Q L+  MG++ W++ D  +K+Q+++L +  F G +RI   L+ V+ RH +EFIGVQETRY
Sbjct  434  QTLPNGMGQICWLTKDMAHKAQGFGLDV--FAGSQRISALLKCVLLRHMGEFIGVQETRY  491

Query  494  LMDAMEKNYAELIKELQRQMPVNKISNILQKLVQENISIRDLRTIFGAIVEWAPKEKDNV  553
            LM+AMEKNY+EL+KELQRQ+P+NKI++ LQ+LV E +SIRDLR IFG++++WAP+EKD +
Sbjct  492  LMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVL  551

Query  554  MLTEYVRIALRRHICQRFSHSKNYLTVFRVGEGLENIIRRSIRQTSAGAYSELNAKKSTL  613
            MLTEYVRIALRRHI +R++   + L ++R+GEG+EN++R SIRQT+ G+Y+ L+++  T 
Sbjct  552  MLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQ  611

Query  614  ILNKIKKSIENKTDILLLTSIDVRHYLRKMIEHDLFSLPVLSFQEIGDEMPIKVEGMVEF  673
            IL+ I +++ + + ++++TS+D R++LRK+ E  LF +P+LS QE+G+E  I+V   +++
Sbjct  612  ILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESIDL  671

Query  674  IGEELNE  680
              EEL +
Sbjct  672  SEEELAD  678

42) A1122_03810 in NC_017168


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  559 bits (2109),  Expect = 2e-160, Method: Compositional matrix adjust.
 Identities = 388/674 (58%), Positives = 538/674 (80%), Gaps = 9/674 (1%)

Query  10   LTMITARQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFS  69
            L++ ++RQD+ LA +LL+A+ MM+LPLPT MVD+LI+INL FSVILL+I+IYL DPL++S
Sbjct  15   LSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLS  74

Query  70   VFPSlllittlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvq  129
            VFPSLLLITTLYRL+LTIST+RLVLLQH+AG+IV+AFG+FVVGGNL+VG+++FTIIT+VQ
Sbjct  75   VFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQ  134

Query  130  fivitKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGA  189
            FIVITKG ERVAEVSARFSLDGMPGKQMSIDGD+RAG ID+ +A+ LR++VQ+ESR++GA
Sbjct  135  FIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGA  194

Query  190  MDGAMKFVKGDAiagiiviliniiggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPS  249
            MDGAMKFVKGD+IAGIIV+L+NIIGGI I+++Q  MS  EA++TY+VLSIGDGLC+QIPS
Sbjct  195  MDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPS  254

Query  250  LLISITAGIIVTRVPGSNKQSLANELAVQVGRQPDALWLAAAILTVFALLPGFPFLIFIT  309
            LLIS++AGIIVTRVPG ++Q+LA EL+ Q++RQP++L L+A +L ++AL+PGFPF+ +  
Sbjct  255  LLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAF  314

Query  310  LaaavaapaFLLYRKNRRISQDGRANGGSEEGGATGQRMTPGAVPLMLHCASNLHHPHLG  369
            ++A +A P +L+ RK+  +S +G      +        M PGA PL+L+ ++ LH ++L 
Sbjct  315  FSALLALPIILIRRKKSVVSANGVEAPEKDS-------MVPGACPLILRLSPTLHSADLI  367

Query  370  RDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDS-LLLTRPC  428
            RDID++RW  FE+ GVPLPEV+I   P  + + L+V +YQE V+ + +P+++  LL  + 
Sbjct  368  RDIDAMRWFLFEDTGVPLPEVNIEVLPE-PTEKLTVLLYQEPVFSLSIPAQADYLLIGAD  426

Query  429  SSLVTNNQVLGAKMGSFDWLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYTAEFIGV  488
            +S+V ++Q L   MG + WL    A +A+ +G+    G QRI + L  V+ R  +EFIGV
Sbjct  427  ASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHMGEFIGV  486

Query  489  QETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTIFGALVVWAPK  548
            QETRYLM+AME  Y+ELVKELQRQ+P+ K+AE LQRLV E +SIRDLR IFG+L+ WAP+
Sbjct  487  QETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPR  546

Query  549  EKDIVMLTEYVRIALRRHLCRRFSHNKTWISVLRLGDGVEHLIRDSIRQTSSGTYSALEE  608
            EKD++MLTEYVRIALRRH+ RR++ +   +++LR+G+G+E+L+R+SIRQT+ GTY+AL  
Sbjct  547  EKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSS  606

Query  609  RQSLLILNKIKNAFAENQDAVLLTTLDVRRFVRKIIERDLFVLPVLSWQELGDEMNLKVA  668
            R+   IL+ I +A+ ++    ++T++D RRF+RKI E  LF +P+LSWQELG+E  ++V 
Sbjct  607  RHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVV  666

Query  669  GTIELIGDELDETA  682
             +I+L  +EL +  
Sbjct  667  ESIDLSEEELADNE  680

43) YPC_0742 in NC_017265


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  559 bits (2109),  Expect = 2e-160, Method: Compositional matrix adjust.
 Identities = 388/674 (58%), Positives = 538/674 (80%), Gaps = 9/674 (1%)

Query  10   LTMITARQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFS  69
            L++ ++RQD+ LA +LL+A+ MM+LPLPT MVD+LI+INL FSVILL+I+IYL DPL++S
Sbjct  15   LSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLS  74

Query  70   VFPSlllittlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvq  129
            VFPSLLLITTLYRL+LTIST+RLVLLQH+AG+IV+AFG+FVVGGNL+VG+++FTIIT+VQ
Sbjct  75   VFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQ  134

Query  130  fivitKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGA  189
            FIVITKG ERVAEVSARFSLDGMPGKQMSIDGD+RAG ID+ +A+ LR++VQ+ESR++GA
Sbjct  135  FIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGA  194

Query  190  MDGAMKFVKGDAiagiiviliniiggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPS  249
            MDGAMKFVKGD+IAGIIV+L+NIIGGI I+++Q  MS  EA++TY+VLSIGDGLC+QIPS
Sbjct  195  MDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPS  254

Query  250  LLISITAGIIVTRVPGSNKQSLANELAVQVGRQPDALWLAAAILTVFALLPGFPFLIFIT  309
            LLIS++AGIIVTRVPG ++Q+LA EL+ Q++RQP++L L+A +L ++AL+PGFPF+ +  
Sbjct  255  LLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAF  314

Query  310  LaaavaapaFLLYRKNRRISQDGRANGGSEEGGATGQRMTPGAVPLMLHCASNLHHPHLG  369
            ++A +A P +L+ RK+  +S +G      +        M PGA PL+L+ ++ LH ++L 
Sbjct  315  FSALLALPIILIRRKKSVVSANGVEAPEKDS-------MVPGACPLILRLSPTLHSADLI  367

Query  370  RDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDS-LLLTRPC  428
            RDID++RW  FE+ GVPLPEV+I   P  + + L+V +YQE V+ + +P+++  LL  + 
Sbjct  368  RDIDAMRWFLFEDTGVPLPEVNIEVLPE-PTEKLTVLLYQEPVFSLSIPAQADYLLIGAD  426

Query  429  SSLVTNNQVLGAKMGSFDWLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYTAEFIGV  488
            +S+V ++Q L   MG + WL    A +A+ +G+    G QRI + L  V+ R  +EFIGV
Sbjct  427  ASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHMGEFIGV  486

Query  489  QETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTIFGALVVWAPK  548
            QETRYLM+AME  Y+ELVKELQRQ+P+ K+AE LQRLV E +SIRDLR IFG+L+ WAP+
Sbjct  487  QETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPR  546

Query  549  EKDIVMLTEYVRIALRRHLCRRFSHNKTWISVLRLGDGVEHLIRDSIRQTSSGTYSALEE  608
            EKD++MLTEYVRIALRRH+ RR++ +   +++LR+G+G+E+L+R+SIRQT+ GTY+AL  
Sbjct  547  EKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSS  606

Query  609  RQSLLILNKIKNAFAENQDAVLLTTLDVRRFVRKIIERDLFVLPVLSWQELGDEMNLKVA  668
            R+   IL+ I +A+ ++    ++T++D RRF+RKI E  LF +P+LSWQELG+E  ++V 
Sbjct  607  RHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVV  666

Query  669  GTIELIGDELDETA  682
             +I+L  +EL +  
Sbjct  667  ESIDLSEEELADNE  680

44) YPO0266 in NC_003143


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  559 bits (2109),  Expect = 2e-160, Method: Compositional matrix adjust.
 Identities = 388/674 (58%), Positives = 538/674 (80%), Gaps = 9/674 (1%)

Query  10   LTMITARQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFS  69
            L++ ++RQD+ LA +LL+A+ MM+LPLPT MVD+LI+INL FSVILL+I+IYL DPL++S
Sbjct  15   LSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLS  74

Query  70   VFPSlllittlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvq  129
            VFPSLLLITTLYRL+LTIST+RLVLLQH+AG+IV+AFG+FVVGGNL+VG+++FTIIT+VQ
Sbjct  75   VFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQ  134

Query  130  fivitKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGA  189
            FIVITKG ERVAEVSARFSLDGMPGKQMSIDGD+RAG ID+ +A+ LR++VQ+ESR++GA
Sbjct  135  FIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGA  194

Query  190  MDGAMKFVKGDAiagiiviliniiggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPS  249
            MDGAMKFVKGD+IAGIIV+L+NIIGGI I+++Q  MS  EA++TY+VLSIGDGLC+QIPS
Sbjct  195  MDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPS  254

Query  250  LLISITAGIIVTRVPGSNKQSLANELAVQVGRQPDALWLAAAILTVFALLPGFPFLIFIT  309
            LLIS++AGIIVTRVPG ++Q+LA EL+ Q++RQP++L L+A +L ++AL+PGFPF+ +  
Sbjct  255  LLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAF  314

Query  310  LaaavaapaFLLYRKNRRISQDGRANGGSEEGGATGQRMTPGAVPLMLHCASNLHHPHLG  369
            ++A +A P +L+ RK+  +S +G      +        M PGA PL+L+ ++ LH ++L 
Sbjct  315  FSALLALPIILIRRKKSVVSANGVEAPEKDS-------MVPGACPLILRLSPTLHSADLI  367

Query  370  RDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDS-LLLTRPC  428
            RDID++RW  FE+ GVPLPEV+I   P  + + L+V +YQE V+ + +P+++  LL  + 
Sbjct  368  RDIDAMRWFLFEDTGVPLPEVNIEVLPE-PTEKLTVLLYQEPVFSLSIPAQADYLLIGAD  426

Query  429  SSLVTNNQVLGAKMGSFDWLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYTAEFIGV  488
            +S+V ++Q L   MG + WL    A +A+ +G+    G QRI + L  V+ R  +EFIGV
Sbjct  427  ASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHMGEFIGV  486

Query  489  QETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTIFGALVVWAPK  548
            QETRYLM+AME  Y+ELVKELQRQ+P+ K+AE LQRLV E +SIRDLR IFG+L+ WAP+
Sbjct  487  QETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPR  546

Query  549  EKDIVMLTEYVRIALRRHLCRRFSHNKTWISVLRLGDGVEHLIRDSIRQTSSGTYSALEE  608
            EKD++MLTEYVRIALRRH+ RR++ +   +++LR+G+G+E+L+R+SIRQT+ GTY+AL  
Sbjct  547  EKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSS  606

Query  609  RQSLLILNKIKNAFAENQDAVLLTTLDVRRFVRKIIERDLFVLPVLSWQELGDEMNLKVA  668
            R+   IL+ I +A+ ++    ++T++D RRF+RKI E  LF +P+LSWQELG+E  ++V 
Sbjct  607  RHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVV  666

Query  669  GTIELIGDELDETA  682
             +I+L  +EL +  
Sbjct  667  ESIDLSEEELADNE  680

45) YPD4_0230 in NC_017154


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  559 bits (2109),  Expect = 2e-160, Method: Compositional matrix adjust.
 Identities = 388/674 (58%), Positives = 538/674 (80%), Gaps = 9/674 (1%)

Query  10   LTMITARQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFS  69
            L++ ++RQD+ LA +LL+A+ MM+LPLPT MVD+LI+INL FSVILL+I+IYL DPL++S
Sbjct  15   LSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLS  74

Query  70   VFPSlllittlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvq  129
            VFPSLLLITTLYRL+LTIST+RLVLLQH+AG+IV+AFG+FVVGGNL+VG+++FTIIT+VQ
Sbjct  75   VFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQ  134

Query  130  fivitKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGA  189
            FIVITKG ERVAEVSARFSLDGMPGKQMSIDGD+RAG ID+ +A+ LR++VQ+ESR++GA
Sbjct  135  FIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGA  194

Query  190  MDGAMKFVKGDAiagiiviliniiggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPS  249
            MDGAMKFVKGD+IAGIIV+L+NIIGGI I+++Q  MS  EA++TY+VLSIGDGLC+QIPS
Sbjct  195  MDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPS  254

Query  250  LLISITAGIIVTRVPGSNKQSLANELAVQVGRQPDALWLAAAILTVFALLPGFPFLIFIT  309
            LLIS++AGIIVTRVPG ++Q+LA EL+ Q++RQP++L L+A +L ++AL+PGFPF+ +  
Sbjct  255  LLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAF  314

Query  310  LaaavaapaFLLYRKNRRISQDGRANGGSEEGGATGQRMTPGAVPLMLHCASNLHHPHLG  369
            ++A +A P +L+ RK+  +S +G      +        M PGA PL+L+ ++ LH ++L 
Sbjct  315  FSALLALPIILIRRKKSVVSANGVEAPEKDS-------MVPGACPLILRLSPTLHSADLI  367

Query  370  RDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDS-LLLTRPC  428
            RDID++RW  FE+ GVPLPEV+I   P  + + L+V +YQE V+ + +P+++  LL  + 
Sbjct  368  RDIDAMRWFLFEDTGVPLPEVNIEVLPE-PTEKLTVLLYQEPVFSLSIPAQADYLLIGAD  426

Query  429  SSLVTNNQVLGAKMGSFDWLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYTAEFIGV  488
            +S+V ++Q L   MG + WL    A +A+ +G+    G QRI + L  V+ R  +EFIGV
Sbjct  427  ASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHMGEFIGV  486

Query  489  QETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTIFGALVVWAPK  548
            QETRYLM+AME  Y+ELVKELQRQ+P+ K+AE LQRLV E +SIRDLR IFG+L+ WAP+
Sbjct  487  QETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPR  546

Query  549  EKDIVMLTEYVRIALRRHLCRRFSHNKTWISVLRLGDGVEHLIRDSIRQTSSGTYSALEE  608
            EKD++MLTEYVRIALRRH+ RR++ +   +++LR+G+G+E+L+R+SIRQT+ GTY+AL  
Sbjct  547  EKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSS  606

Query  609  RQSLLILNKIKNAFAENQDAVLLTTLDVRRFVRKIIERDLFVLPVLSWQELGDEMNLKVA  668
            R+   IL+ I +A+ ++    ++T++D RRF+RKI E  LF +P+LSWQELG+E  ++V 
Sbjct  607  RHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVV  666

Query  669  GTIELIGDELDETA  682
             +I+L  +EL +  
Sbjct  667  ESIDLSEEELADNE  680

46) YPD8_0235 in NC_017160


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  559 bits (2109),  Expect = 2e-160, Method: Compositional matrix adjust.
 Identities = 388/674 (58%), Positives = 538/674 (80%), Gaps = 9/674 (1%)

Query  10   LTMITARQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFS  69
            L++ ++RQD+ LA +LL+A+ MM+LPLPT MVD+LI+INL FSVILL+I+IYL DPL++S
Sbjct  15   LSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLS  74

Query  70   VFPSlllittlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvq  129
            VFPSLLLITTLYRL+LTIST+RLVLLQH+AG+IV+AFG+FVVGGNL+VG+++FTIIT+VQ
Sbjct  75   VFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQ  134

Query  130  fivitKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGA  189
            FIVITKG ERVAEVSARFSLDGMPGKQMSIDGD+RAG ID+ +A+ LR++VQ+ESR++GA
Sbjct  135  FIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGA  194

Query  190  MDGAMKFVKGDAiagiiviliniiggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPS  249
            MDGAMKFVKGD+IAGIIV+L+NIIGGI I+++Q  MS  EA++TY+VLSIGDGLC+QIPS
Sbjct  195  MDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPS  254

Query  250  LLISITAGIIVTRVPGSNKQSLANELAVQVGRQPDALWLAAAILTVFALLPGFPFLIFIT  309
            LLIS++AGIIVTRVPG ++Q+LA EL+ Q++RQP++L L+A +L ++AL+PGFPF+ +  
Sbjct  255  LLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAF  314

Query  310  LaaavaapaFLLYRKNRRISQDGRANGGSEEGGATGQRMTPGAVPLMLHCASNLHHPHLG  369
            ++A +A P +L+ RK+  +S +G      +        M PGA PL+L+ ++ LH ++L 
Sbjct  315  FSALLALPIILIRRKKSVVSANGVEAPEKDS-------MVPGACPLILRLSPTLHSADLI  367

Query  370  RDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDS-LLLTRPC  428
            RDID++RW  FE+ GVPLPEV+I   P  + + L+V +YQE V+ + +P+++  LL  + 
Sbjct  368  RDIDAMRWFLFEDTGVPLPEVNIEVLPE-PTEKLTVLLYQEPVFSLSIPAQADYLLIGAD  426

Query  429  SSLVTNNQVLGAKMGSFDWLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYTAEFIGV  488
            +S+V ++Q L   MG + WL    A +A+ +G+    G QRI + L  V+ R  +EFIGV
Sbjct  427  ASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHMGEFIGV  486

Query  489  QETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTIFGALVVWAPK  548
            QETRYLM+AME  Y+ELVKELQRQ+P+ K+AE LQRLV E +SIRDLR IFG+L+ WAP+
Sbjct  487  QETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPR  546

Query  549  EKDIVMLTEYVRIALRRHLCRRFSHNKTWISVLRLGDGVEHLIRDSIRQTSSGTYSALEE  608
            EKD++MLTEYVRIALRRH+ RR++ +   +++LR+G+G+E+L+R+SIRQT+ GTY+AL  
Sbjct  547  EKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSS  606

Query  609  RQSLLILNKIKNAFAENQDAVLLTTLDVRRFVRKIIERDLFVLPVLSWQELGDEMNLKVA  668
            R+   IL+ I +A+ ++    ++T++D RRF+RKI E  LF +P+LSWQELG+E  ++V 
Sbjct  607  RHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVV  666

Query  669  GTIELIGDELDETA  682
             +I+L  +EL +  
Sbjct  667  ESIDLSEEELADNE  680

47) YPZ3_0228 in NC_014029


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  559 bits (2109),  Expect = 2e-160, Method: Compositional matrix adjust.
 Identities = 388/674 (58%), Positives = 538/674 (80%), Gaps = 9/674 (1%)

Query  10   LTMITARQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFS  69
            L++ ++RQD+ LA +LL+A+ MM+LPLPT MVD+LI+INL FSVILL+I+IYL DPL++S
Sbjct  15   LSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLS  74

Query  70   VFPSlllittlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvq  129
            VFPSLLLITTLYRL+LTIST+RLVLLQH+AG+IV+AFG+FVVGGNL+VG+++FTIIT+VQ
Sbjct  75   VFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQ  134

Query  130  fivitKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGA  189
            FIVITKG ERVAEVSARFSLDGMPGKQMSIDGD+RAG ID+ +A+ LR++VQ+ESR++GA
Sbjct  135  FIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGA  194

Query  190  MDGAMKFVKGDAiagiiviliniiggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPS  249
            MDGAMKFVKGD+IAGIIV+L+NIIGGI I+++Q  MS  EA++TY+VLSIGDGLC+QIPS
Sbjct  195  MDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPS  254

Query  250  LLISITAGIIVTRVPGSNKQSLANELAVQVGRQPDALWLAAAILTVFALLPGFPFLIFIT  309
            LLIS++AGIIVTRVPG ++Q+LA EL+ Q++RQP++L L+A +L ++AL+PGFPF+ +  
Sbjct  255  LLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAF  314

Query  310  LaaavaapaFLLYRKNRRISQDGRANGGSEEGGATGQRMTPGAVPLMLHCASNLHHPHLG  369
            ++A +A P +L+ RK+  +S +G      +        M PGA PL+L+ ++ LH ++L 
Sbjct  315  FSALLALPIILIRRKKSVVSANGVEAPEKDS-------MVPGACPLILRLSPTLHSADLI  367

Query  370  RDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDS-LLLTRPC  428
            RDID++RW  FE+ GVPLPEV+I   P  + + L+V +YQE V+ + +P+++  LL  + 
Sbjct  368  RDIDAMRWFLFEDTGVPLPEVNIEVLPE-PTEKLTVLLYQEPVFSLSIPAQADYLLIGAD  426

Query  429  SSLVTNNQVLGAKMGSFDWLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYTAEFIGV  488
            +S+V ++Q L   MG + WL    A +A+ +G+    G QRI + L  V+ R  +EFIGV
Sbjct  427  ASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHMGEFIGV  486

Query  489  QETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTIFGALVVWAPK  548
            QETRYLM+AME  Y+ELVKELQRQ+P+ K+AE LQRLV E +SIRDLR IFG+L+ WAP+
Sbjct  487  QETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPR  546

Query  549  EKDIVMLTEYVRIALRRHLCRRFSHNKTWISVLRLGDGVEHLIRDSIRQTSSGTYSALEE  608
            EKD++MLTEYVRIALRRH+ RR++ +   +++LR+G+G+E+L+R+SIRQT+ GTY+AL  
Sbjct  547  EKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSS  606

Query  609  RQSLLILNKIKNAFAENQDAVLLTTLDVRRFVRKIIERDLFVLPVLSWQELGDEMNLKVA  668
            R+   IL+ I +A+ ++    ++T++D RRF+RKI E  LF +P+LSWQELG+E  ++V 
Sbjct  607  RHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVV  666

Query  669  GTIELIGDELDETA  682
             +I+L  +EL +  
Sbjct  667  ESIDLSEEELADNE  680

48) flhA1 in NC_005810


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  558 bits (2108),  Expect = 2e-160, Method: Compositional matrix adjust.
 Identities = 388/674 (58%), Positives = 538/674 (80%), Gaps = 9/674 (1%)

Query  12   LTMITARQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFS  71
            L++ ++RQD+ LA +LL+A+ MM+LPLPT MVD+LI+INL FSVILL+I+IYL DPL++S
Sbjct  15   LSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLS  74

Query  72   VFPSlllittlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvq  131
            VFPSLLLITTLYRL+LTIST+RLVLLQH+AG+IV+AFG+FVVGGNL+VG+++FTIIT+VQ
Sbjct  75   VFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQ  134

Query  132  fivitKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGA  191
            FIVITKG ERVAEVSARFSLDGMPGKQMSIDGD+RAG ID+ +A+ LR++VQ+ESR++GA
Sbjct  135  FIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGA  194

Query  192  MDGAMKFVKGDAiagiiviliniiggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPS  251
            MDGAMKFVKGD+IAGIIV+L+NIIGGI I+++Q  MS  EA++TY+VLSIGDGLC+QIPS
Sbjct  195  MDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPS  254

Query  252  LLISITAGIIVTRVPGSNKQSLANELAVQVGRQPDALWLAAAILTVFALLPGFPFLIFIT  311
            LLIS++AGIIVTRVPG ++Q+LA EL+ Q++RQP++L L+A +L ++AL+PGFPF+ +  
Sbjct  255  LLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAF  314

Query  312  LaaavaapaFLLYRKNRRISQDGRANGGSEEGGATGQRMTPGAVPLMLHCASNLHHPHLG  371
            ++A +A P +L+ RK+  +S +G      +        M PGA PL+L+ ++ LH ++L 
Sbjct  315  FSALLALPIILIRRKKSVVSANGVEAPEKDS-------MVPGACPLILRLSPTLHSADLI  367

Query  372  RDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDS-LLLTRPC  430
            RDID++RW  FE+ GVPLPEV+I   P  + + L+V +YQE V+ + +P+++  LL  + 
Sbjct  368  RDIDAMRWFLFEDTGVPLPEVNIEVLPE-PTEKLTVLLYQEPVFSLSIPAQADYLLIGAD  426

Query  431  SSLVTNNQVLGAKMGSFDWLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYTAEFIGV  490
            +S+V ++Q L   MG + WL    A +A+ +G+    G QRI + L  V+ R  +EFIGV
Sbjct  427  ASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHMGEFIGV  486

Query  491  QETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTIFGALVVWAPK  550
            QETRYLM+AME  Y+ELVKELQRQ+P+ K+AE LQRLV E +SIRDLR IFG+L+ WAP+
Sbjct  487  QETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPR  546

Query  551  EKDIVMLTEYVRIALRRHLCRRFSHNKTWISVLRLGDGVEHLIRDSIRQTSSGTYSALEE  610
            EKD++MLTEYVRIALRRH+ RR++ +   +++LR+G+G+E+L+R+SIRQT+ GTY+AL  
Sbjct  547  EKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSS  606

Query  611  RQSLLILNKIKNAFAENQDAVLLTTLDVRRFVRKIIERDLFVLPVLSWQELGDEMNLKVA  670
            R+   IL+ I +A+ ++    ++T++D RRF+RKI E  LF +P+LSWQELG+E  ++V 
Sbjct  607  RHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVV  666

Query  671  GTIELIGDELDETA  684
             +I+L  +EL +  
Sbjct  667  ESIDLSEEELADNE  680

49) y0525 in NC_004088


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  558 bits (2108),  Expect = 2e-160, Method: Compositional matrix adjust.
 Identities = 388/674 (58%), Positives = 538/674 (80%), Gaps = 9/674 (1%)

Query  12   LTMITARQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFS  71
            L++ ++RQD+ LA +LL+A+ MM+LPLPT MVD+LI+INL FSVILL+I+IYL DPL++S
Sbjct  15   LSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLS  74

Query  72   VFPSlllittlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvq  131
            VFPSLLLITTLYRL+LTIST+RLVLLQH+AG+IV+AFG+FVVGGNL+VG+++FTIIT+VQ
Sbjct  75   VFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQ  134

Query  132  fivitKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGA  191
            FIVITKG ERVAEVSARFSLDGMPGKQMSIDGD+RAG ID+ +A+ LR++VQ+ESR++GA
Sbjct  135  FIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGA  194

Query  192  MDGAMKFVKGDAiagiiviliniiggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPS  251
            MDGAMKFVKGD+IAGIIV+L+NIIGGI I+++Q  MS  EA++TY+VLSIGDGLC+QIPS
Sbjct  195  MDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPS  254

Query  252  LLISITAGIIVTRVPGSNKQSLANELAVQVGRQPDALWLAAAILTVFALLPGFPFLIFIT  311
            LLIS++AGIIVTRVPG ++Q+LA EL+ Q++RQP++L L+A +L ++AL+PGFPF+ +  
Sbjct  255  LLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAF  314

Query  312  LaaavaapaFLLYRKNRRISQDGRANGGSEEGGATGQRMTPGAVPLMLHCASNLHHPHLG  371
            ++A +A P +L+ RK+  +S +G      +        M PGA PL+L+ ++ LH ++L 
Sbjct  315  FSALLALPIILIRRKKSVVSANGVEAPEKDS-------MVPGACPLILRLSPTLHSADLI  367

Query  372  RDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDS-LLLTRPC  430
            RDID++RW  FE+ GVPLPEV+I   P  + + L+V +YQE V+ + +P+++  LL  + 
Sbjct  368  RDIDAMRWFLFEDTGVPLPEVNIEVLPE-PTEKLTVLLYQEPVFSLSIPAQADYLLIGAD  426

Query  431  SSLVTNNQVLGAKMGSFDWLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYTAEFIGV  490
            +S+V ++Q L   MG + WL    A +A+ +G+    G QRI + L  V+ R  +EFIGV
Sbjct  427  ASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHMGEFIGV  486

Query  491  QETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTIFGALVVWAPK  550
            QETRYLM+AME  Y+ELVKELQRQ+P+ K+AE LQRLV E +SIRDLR IFG+L+ WAP+
Sbjct  487  QETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPR  546

Query  551  EKDIVMLTEYVRIALRRHLCRRFSHNKTWISVLRLGDGVEHLIRDSIRQTSSGTYSALEE  610
            EKD++MLTEYVRIALRRH+ RR++ +   +++LR+G+G+E+L+R+SIRQT+ GTY+AL  
Sbjct  547  EKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSS  606

Query  611  RQSLLILNKIKNAFAENQDAVLLTTLDVRRFVRKIIERDLFVLPVLSWQELGDEMNLKVA  670
            R+   IL+ I +A+ ++    ++T++D RRF+RKI E  LF +P+LSWQELG+E  ++V 
Sbjct  607  RHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVV  666

Query  671  GTIELIGDELDETA  684
             +I+L  +EL +  
Sbjct  667  ESIDLSEEELADNE  680

50) YPA_4017 in NC_008150


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  557 bits (2103),  Expect = 6e-160, Method: Compositional matrix adjust.
 Identities = 387/670 (58%), Positives = 535/670 (80%), Gaps = 9/670 (1%)

Query  3    TARQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPS  62
            ++RQD+ LA +LL+A+ MM+LPLPT MVD+LI+INL FSVILL+I+IYL DPL++SVFPS
Sbjct  19   AGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPS  78

Query  63   lllittlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfivi  122
            LLLITTLYRL+LTIST+RLVLLQH+AG+IV+AFG+FVVGGNL+VG+++FTIIT+VQFIVI
Sbjct  79   LLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVI  138

Query  123  tKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDGA  182
            TKG ERVAEVSARFSLDGMPGKQMSIDGD+RAG ID+ +A+ LR++VQ+ESR++GAMDGA
Sbjct  139  TKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGA  198

Query  183  MKFVKGDAiagiiviliniiggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLIS  242
            MKFVKGD+IAGIIV+L+NIIGGI I+++Q  MS  EA++TY+VLSIGDGLC+QIPSLLIS
Sbjct  199  MKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLIS  258

Query  243  ITAGIIVTRVPGSNKQSLANELAVQVGRQPDALWLAAAILTVFALLPGFPFLIFITLaaa  302
            ++AGIIVTRVPG ++Q+LA EL+ Q++RQP++L L+A +L ++AL+PGFPF+ +  ++A 
Sbjct  259  LSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAFFSAL  318

Query  303  vaapaFLLYRKNRRISQDGRANGGSEEGGATGQRMTPGAVPLMLHCASNLHHPHLGRDID  362
            +A P +L+ RK+  +S +G      +        M PGA PL+L+ ++ LH ++L RDID
Sbjct  319  LALPIILIRRKKSVVSANGVEAPEKDS-------MVPGACPLILRLSPTLHSADLIRDID  371

Query  363  GLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDS-LLLTRPCSSLV  421
            ++RW  FE+ GVPLPEV+I   P  + + L+V +YQE V+ + +P+++  LL  + +S+V
Sbjct  372  AMRWFLFEDTGVPLPEVNIEVLPE-PTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVV  430

Query  422  TNNQVLGAKMGSFDWLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYTAEFIGVQETR  481
             ++Q L   MG + WL    A +A+ +G+    G QRI + L  V+ R  +EFIGVQETR
Sbjct  431  GDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHMGEFIGVQETR  490

Query  482  YLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTIFGALVVWAPKEKDI  541
            YLM+AME  Y+ELVKELQRQ+P+ K+AE LQRLV E +SIRDLR IFG+L+ WAP+EKD+
Sbjct  491  YLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDV  550

Query  542  VMLTEYVRIALRRHLCRRFSHNKTWISVLRLGDGVEHLIRDSIRQTSSGTYSALEERQSL  601
            +MLTEYVRIALRRH+ RR++ +   +++LR+G+G+E+L+R+SIRQT+ GTY+AL  R+  
Sbjct  551  LMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKT  610

Query  602  LILNKIKNAFAENQDAVLLTTLDVRRFVRKIIERDLFVLPVLSWQELGDEMNLKVAGTIE  661
             IL+ I +A+ ++    ++T++D RRF+RKI E  LF +P+LSWQELG+E  ++V  +I+
Sbjct  611  QILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670

Query  662  LIGDELDETA  671
            L  +EL +  
Sbjct  671  LSEEELADNE  680

51) YPDSF_3705 in NC_009381


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  557 bits (2103),  Expect = 6e-160, Method: Compositional matrix adjust.
 Identities = 387/670 (58%), Positives = 535/670 (80%), Gaps = 9/670 (1%)

Query  3    TARQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPS  62
            ++RQD+ LA +LL+A+ MM+LPLPT MVD+LI+INL FSVILL+I+IYL DPL++SVFPS
Sbjct  19   AGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPS  78

Query  63   lllittlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfivi  122
            LLLITTLYRL+LTIST+RLVLLQH+AG+IV+AFG+FVVGGNL+VG+++FTIIT+VQFIVI
Sbjct  79   LLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVI  138

Query  123  tKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDGA  182
            TKG ERVAEVSARFSLDGMPGKQMSIDGD+RAG ID+ +A+ LR++VQ+ESR++GAMDGA
Sbjct  139  TKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGA  198

Query  183  MKFVKGDAiagiiviliniiggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLIS  242
            MKFVKGD+IAGIIV+L+NIIGGI I+++Q  MS  EA++TY+VLSIGDGLC+QIPSLLIS
Sbjct  199  MKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLIS  258

Query  243  ITAGIIVTRVPGSNKQSLANELAVQVGRQPDALWLAAAILTVFALLPGFPFLIFITLaaa  302
            ++AGIIVTRVPG ++Q+LA EL+ Q++RQP++L L+A +L ++AL+PGFPF+ +  ++A 
Sbjct  259  LSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAFFSAL  318

Query  303  vaapaFLLYRKNRRISQDGRANGGSEEGGATGQRMTPGAVPLMLHCASNLHHPHLGRDID  362
            +A P +L+ RK+  +S +G      +        M PGA PL+L+ ++ LH ++L RDID
Sbjct  319  LALPIILIRRKKSVVSANGVEAPEKDS-------MVPGACPLILRLSPTLHSADLIRDID  371

Query  363  GLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDS-LLLTRPCSSLV  421
            ++RW  FE+ GVPLPEV+I   P  + + L+V +YQE V+ + +P+++  LL  + +S+V
Sbjct  372  AMRWFLFEDTGVPLPEVNIEVLPE-PTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVV  430

Query  422  TNNQVLGAKMGSFDWLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYTAEFIGVQETR  481
             ++Q L   MG + WL    A +A+ +G+    G QRI + L  V+ R  +EFIGVQETR
Sbjct  431  GDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHMGEFIGVQETR  490

Query  482  YLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTIFGALVVWAPKEKDI  541
            YLM+AME  Y+ELVKELQRQ+P+ K+AE LQRLV E +SIRDLR IFG+L+ WAP+EKD+
Sbjct  491  YLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDV  550

Query  542  VMLTEYVRIALRRHLCRRFSHNKTWISVLRLGDGVEHLIRDSIRQTSSGTYSALEERQSL  601
            +MLTEYVRIALRRH+ RR++ +   +++LR+G+G+E+L+R+SIRQT+ GTY+AL  R+  
Sbjct  551  LMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKT  610

Query  602  LILNKIKNAFAENQDAVLLTTLDVRRFVRKIIERDLFVLPVLSWQELGDEMNLKVAGTIE  661
             IL+ I +A+ ++    ++T++D RRF+RKI E  LF +P+LSWQELG+E  ++V  +I+
Sbjct  611  QILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670

Query  662  LIGDELDETA  671
            L  +EL +  
Sbjct  671  LSEEELADNE  680

52) YPTB0322 in NC_006155


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  554 bits (2092),  Expect = 4e-159, Method: Compositional matrix adjust.
 Identities = 389/674 (58%), Positives = 540/674 (81%), Gaps = 9/674 (1%)

Query  10   LTMITARQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFS  69
            L++ ++RQD+ LA +LL+A+ MM+LPLPT MVD+LI+INL FSVILL+I+IYL DPL++S
Sbjct  15   LSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLS  74

Query  70   VFPSlllittlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvq  129
            VFPSLLLITTLYRL+LTIST+RLVLLQH+AG+IV+AFG+FVVGGNL+VG+++FTIIT+VQ
Sbjct  75   VFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQ  134

Query  130  fivitKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGA  189
            FIVITKG ERVAEVSARFSLDGMPGKQMSIDGD+RAG ID+ +A+ LR++VQ+ESR++GA
Sbjct  135  FIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGA  194

Query  190  MDGAMKFVKGDAiagiivilvniiggitigvMQHKMSAEEAMNTYAVLSIGDGLCAQIPS  249
            MDGAMKFVKGD+IAGIIV+LVNIIGGI I+++Q  MS  EA++TY+VLSIGDGLC+QIPS
Sbjct  195  MDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPS  254

Query  250  LLISITAGIIVTRVPGSNKQSLANELAVQVGRQPDALWLAAAILTVFALLPGFPFLIFIT  309
            LLIS++AGIIVTRVPG ++Q+LA EL+ Q++RQP++L L+A +L ++AL+PGFPF+ +  
Sbjct  255  LLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAF  314

Query  310  LaaavaapaFLLYRKNRRISQDgrangggeegaatgQRMTPGAVPLMLHCASNLHHPHLG  369
            ++A +A P +L+ RK+  +S +          A+  + M PGA PL+L+ ++ LH ++L 
Sbjct  315  FSALLALPIILIRRKKSVVSAN-------GVEAPEKDSMVPGACPLILRLSPTLHSADLI  367

Query  370  RDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDS-LLLTRPC  428
            RDID++RW  FE+ GVPLPEV+I   P  + + L+V +YQE V+ + +P+++  LL  + 
Sbjct  368  RDIDAMRWFLFEDTGVPLPEVNIEVLPE-PTEKLTVLLYQEPVFSLSIPAQADYLLIGAD  426

Query  429  SSLVTNNQALGAKMGSFDWLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYTAEFIGV  488
            +S+V ++Q+L   MG + WL    A +A+ +G+    G QRI + L  V+ R  +EFIGV
Sbjct  427  ASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHMGEFIGV  486

Query  489  QETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTIFGALVVWAPK  548
            QETRYLM+AME  Y+ELVKELQRQ+P+ K+AE LQRLV E +SIRDLR IFG+L+ WAP+
Sbjct  487  QETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPR  546

Query  549  EKDIVMLTEYVRIALRRHLCRRFSHNKTWISVLRLGDGVEHLIRDSIRQTSSGTYSALEE  608
            EKD++MLTEYVRIALRRH+ RR++ +   +++LR+G+G+E+L+R+SIRQT+ GTY+AL  
Sbjct  547  EKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSS  606

Query  609  RQSLLILNKIKNAFAENQDAVLLTTLDVRRFVRKIIERDLFVLPVLSWQELGDEMNLKVA  668
            R+   IL+ I +A+ ++    ++T++D RRF+RKI E  LF +P+LSWQELG+E  ++V 
Sbjct  607  RHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVV  666

Query  669  GTIELIGDELDETA  682
             +I+L  +EL +  
Sbjct  667  ESIDLSEEELADNE  680

53) YPTS_0346 in NC_010634


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  554 bits (2092),  Expect = 4e-159, Method: Compositional matrix adjust.
 Identities = 389/674 (58%), Positives = 540/674 (81%), Gaps = 9/674 (1%)

Query  10   LTMITARQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFS  69
            L++ ++RQD+ LA +LL+A+ MM+LPLPT MVD+LI+INL FSVILL+I+IYL DPL++S
Sbjct  15   LSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLS  74

Query  70   VFPSlllittlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvq  129
            VFPSLLLITTLYRL+LTIST+RLVLLQH+AG+IV+AFG+FVVGGNL+VG+++FTIIT+VQ
Sbjct  75   VFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQ  134

Query  130  fivitKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGA  189
            FIVITKG ERVAEVSARFSLDGMPGKQMSIDGD+RAG ID+ +A+ LR++VQ+ESR++GA
Sbjct  135  FIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGA  194

Query  190  MDGAMKFVKGDAiagiivilvniiggitigvMQHKMSAEEAMNTYAVLSIGDGLCAQIPS  249
            MDGAMKFVKGD+IAGIIV+LVNIIGGI I+++Q  MS  EA++TY+VLSIGDGLC+QIPS
Sbjct  195  MDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPS  254

Query  250  LLISITAGIIVTRVPGSNKQSLANELAVQVGRQPDALWLAAAILTVFALLPGFPFLIFIT  309
            LLIS++AGIIVTRVPG ++Q+LA EL+ Q++RQP++L L+A +L ++AL+PGFPF+ +  
Sbjct  255  LLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAF  314

Query  310  LaaavaapaFLLYRKNRRISQDgrangggeegaatgQRMTPGAVPLMLHCASNLHHPHLG  369
            ++A +A P +L+ RK+  +S +          A+  + M PGA PL+L+ ++ LH ++L 
Sbjct  315  FSALLALPIILIRRKKSVVSAN-------GVEAPEKDSMVPGACPLILRLSPTLHSADLI  367

Query  370  RDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDS-LLLTRPC  428
            RDID++RW  FE+ GVPLPEV+I   P  + + L+V +YQE V+ + +P+++  LL  + 
Sbjct  368  RDIDAMRWFLFEDTGVPLPEVNIEVLPE-PTEKLTVLLYQEPVFSLSIPAQADYLLIGAD  426

Query  429  SSLVTNNQALGAKMGSFDWLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYTAEFIGV  488
            +S+V ++Q+L   MG + WL    A +A+ +G+    G QRI + L  V+ R  +EFIGV
Sbjct  427  ASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHMGEFIGV  486

Query  489  QETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTIFGALVVWAPK  548
            QETRYLM+AME  Y+ELVKELQRQ+P+ K+AE LQRLV E +SIRDLR IFG+L+ WAP+
Sbjct  487  QETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPR  546

Query  549  EKDIVMLTEYVRIALRRHLCRRFSHNKTWISVLRLGDGVEHLIRDSIRQTSSGTYSALEE  608
            EKD++MLTEYVRIALRRH+ RR++ +   +++LR+G+G+E+L+R+SIRQT+ GTY+AL  
Sbjct  547  EKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSS  606

Query  609  RQSLLILNKIKNAFAENQDAVLLTTLDVRRFVRKIIERDLFVLPVLSWQELGDEMNLKVA  668
            R+   IL+ I +A+ ++    ++T++D RRF+RKI E  LF +P+LSWQELG+E  ++V 
Sbjct  607  RHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVV  666

Query  669  GTIELIGDELDETA  682
             +I+L  +EL +  
Sbjct  667  ESIDLSEEELADNE  680

54) YpsIP31758_3819 in NC_009708


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  553 bits (2088),  Expect = 1e-158, Method: Compositional matrix adjust.
 Identities = 389/674 (58%), Positives = 539/674 (80%), Gaps = 9/674 (1%)

Query  10   LTMITARQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFS  69
            L++ ++RQD+ LA +LL+A+ MM+LPLPT MVD+LI+INL FSVILL+I+IYL DPL++S
Sbjct  15   LSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLS  74

Query  70   VFPSlllittlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvq  129
            VFPSLLLITTLYRL+LTIST+RLVLLQH+AG+IV+AFG+FVVGGNL+VG+++FTIIT+VQ
Sbjct  75   VFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQ  134

Query  130  fivitKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGA  189
            FIVITKG ERVAEVSARFSLDGMPGKQMSIDGD+RAG ID+ +A+ LR++VQ+ESR++GA
Sbjct  135  FIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGA  194

Query  190  MDGAMKFVKGDAiagiivilvniiggitigvMQHKMSAEEAMNTYAVLSIGDGLCAQIPS  249
            MDGAMKFVKGD+IAGIIV+LVNIIGGI I+++Q  MS  EA++TY+VLSIGDGLC+QIPS
Sbjct  195  MDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPS  254

Query  250  LLISITAGIIVTRVPGSNKQSLANELAVQVGRQPDALWLAAAILTVFALLPGFPFLIFIT  309
            LLIS++AGIIVTRVPG ++Q+LA EL+ Q++RQP++L L+A +L ++AL+PGFPF+ +  
Sbjct  255  LLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAF  314

Query  310  LaaavaapaFLLYRKNRRISQDgrangggeegaatgQRMTPGAVPLMLHCASNLHHPHLG  369
            ++A +A P +L+ RK+  +S +          A+  + M PGA PL+L+ ++ LH ++L 
Sbjct  315  FSALLALPIILIRRKKSVVSAN-------GVEAPEKDSMVPGACPLILRLSPTLHSADLI  367

Query  370  RDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDS-LLLTRPC  428
            RDID++RW  FE+ GVPLPEV+I   P  + + L+V +YQE V+ + +P+++  LL  + 
Sbjct  368  RDIDAMRWFLFEDTGVPLPEVNIEVLPE-PTEKLTVLLYQEPVFSLSIPAQADYLLIGAD  426

Query  429  SSLVTNNQVLGAKMGSFDWLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYTAEFIGV  488
            +S+V ++Q L   MG + WL    A +A+ +G+    G QRI + L  V+ R  +EFIGV
Sbjct  427  ASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHMGEFIGV  486

Query  489  QETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTIFGALVVWAPK  548
            QETRYLM+AME  Y+ELVKELQRQ+P+ K+AE LQRLV E +SIRDLR IFG+L+ WAP+
Sbjct  487  QETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPR  546

Query  549  EKDIVMLTEYVRIALRRHLCRRFSHNKTWISVLRLGDGVEHLIRDSIRQTSSGTYSALEE  608
            EKD++MLTEYVRIALRRH+ RR++ +   +++LR+G+G+E+L+R+SIRQT+ GTY+AL  
Sbjct  547  EKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSS  606

Query  609  RRSLLILNKIKNAFAENQDAVLLTTLDVRRFVRKIIERDLFVLPVLSWQELGDEMNLKVA  668
            R+   IL+ I +A+ ++    ++T++D RRF+RKI E  LF +P+LSWQELG+E  ++V 
Sbjct  607  RHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVV  666

Query  669  GTIELIGDELDETA  682
             +I+L  +EL +  
Sbjct  667  ESIDLSEEELADNE  680

55) YPK_3907 in NC_010465


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  553 bits (2088),  Expect = 1e-158, Method: Compositional matrix adjust.
 Identities = 389/674 (58%), Positives = 539/674 (80%), Gaps = 9/674 (1%)

Query  10   LTMITARQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFS  69
            L++ ++RQD+ LA +LL+A+ MM+LPLPT MVD+LI+INL FSVILL+I+IYL DPL++S
Sbjct  15   LSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLS  74

Query  70   VFPSlllittlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvq  129
            VFPSLLLITTLYRL+LTIST+RLVLLQH+AG+IV+AFG+FVVGGNL+VG+++FTIIT+VQ
Sbjct  75   VFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQ  134

Query  130  fivitKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGA  189
            FIVITKG ERVAEVSARFSLDGMPGKQMSIDGD+RAG ID+ +A+ LR++VQ+ESR++GA
Sbjct  135  FIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGA  194

Query  190  MDGAMKFVKGDAiagiivilvniiggitigvMQHKMSAEEAMNTYAVLSIGDGLCAQIPS  249
            MDGAMKFVKGD+IAGIIV+LVNIIGGI I+++Q  MS  EA++TY+VLSIGDGLC+QIPS
Sbjct  195  MDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPS  254

Query  250  LLISITAGIIVTRVPGSNKQSLANELAVQVGRQPDALWLAAAILTVFALLPGFPFLIFIT  309
            LLIS++AGIIVTRVPG ++Q+LA EL+ Q++RQP++L L+A +L ++AL+PGFPF+ +  
Sbjct  255  LLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAF  314

Query  310  LaaavaapaFLLYRKNRRISQDgrangggeegaatgQRMTPGAVPLMLHCASNLHHPHLG  369
            ++A +A P +L+ RK+  +S +          A+  + M PGA PL+L+ ++ LH ++L 
Sbjct  315  FSALLALPIILIRRKKSVVSAN-------GVEAPEKDSMVPGACPLILRLSPTLHSADLI  367

Query  370  RDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDS-LLLTRPC  428
            RDID++RW  FE+ GVPLPEV+I   P  + + L+V +YQE V+ + +P+++  LL  + 
Sbjct  368  RDIDAMRWFLFEDTGVPLPEVNIEVLPE-PTEKLTVLLYQEPVFSLSIPAQADYLLIGAD  426

Query  429  SSLVTNNQVLGAKMGSFDWLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYTAEFIGV  488
            +S+V ++Q L   MG + WL    A +A+ +G+    G QRI + L  V+ R  +EFIGV
Sbjct  427  ASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHMGEFIGV  486

Query  489  QETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTIFGALVVWAPK  548
            QETRYLM+AME  Y+ELVKELQRQ+P+ K+AE LQRLV E +SIRDLR IFG+L+ WAP+
Sbjct  487  QETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPR  546

Query  549  EKDIVMLTEYVRIALRRHLCRRFSHNKTWISVLRLGDGVEHLIRDSIRQTSSGTYSALEE  608
            EKD++MLTEYVRIALRRH+ RR++ +   +++LR+G+G+E+L+R+SIRQT+ GTY+AL  
Sbjct  547  EKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSS  606

Query  609  RRSLLILNKIKNAFAENQDAVLLTTLDVRRFVRKIIERDLFVLPVLSWQELGDEMNLKVA  668
            R+   IL+ I +A+ ++    ++T++D RRF+RKI E  LF +P+LSWQELG+E  ++V 
Sbjct  607  RHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVV  666

Query  669  GTIELIGDELDETA  682
             +I+L  +EL +  
Sbjct  667  ESIDLSEEELADNE  680

56) YE105_C0332 in NC_015224


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  548 bits (2068),  Expect = 4e-157, Method: Compositional matrix adjust.
 Identities = 399/666 (60%), Positives = 538/666 (81%), Gaps = 6/666 (0%)

Query  14   AARQDVFLAVMLLVAIFMMILPLPTVMVDVLIAVNLSFSVILLMISIYLRDPLEFSVFPS  73
            A+RQD+ LA +LL+AI MM+LPLPT MVD+LI++NL FSVILL+I+IYL DPL++SVFPS
Sbjct  19   AGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPS  78

Query  74   lllittlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGLiiftiitvvqfivi  133
            LLLITTLYRL+LTIST+RLVLLQH+AG+IV+AFG+FVVGGNL+VGL++FTIIT+VQFIVI
Sbjct  79   LLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVI  138

Query  134  tKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDSAEAGRLRERVQKESRMFGAMDGA  193
            TKG ERVAEVSARFSLDGMPGKQMSIDGD+RAGVID+ +A  LR++VQ+ESR +GAMDGA
Sbjct  139  TKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGA  198

Query  194  MKFVKGDAiagiivilvniiggitigvLQHNMSAEEAMTTYAVLSVGDGLCAQIPSLLIS  253
            MKFVKGD+IAGIIV+LVNIIGGI I+++Q +MS  EA+ TY+VLS+GDGLC+QIPSLLIS
Sbjct  199  MKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLIS  258

Query  254  ITAGIIVTRVPDQDKQSLAKDLAIQVGRQPDALLLAAAILTVfallpgfpflifillaal  313
            ++AGIIVTRVP++ +Q+LA +L+ Q++RQP++L+L+A +L ++AL+PGFPF+ + +++AL
Sbjct  259  LSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAFFSAL  318

Query  314  vaTPAFLLYRKKKPSAGASGRGDKLPSPASAMTPGAVPLMLYCAPNLHYPHLGRDLDGLR  373
            +A P +L+ R+KK+  +A+G     ++   +M PGA PL+L  +P LH ++L RD+D++R
Sbjct  319  LALPIILI-RRKKSVVSANGVE---APEKDSMVPGACPLILRLSPTLHSADLIRDIDAMR  374

Query  374  WRWFEHLGVPLPEVVVRSDPSLAENELSIRVYQEQVLKLTLPFD-DVLLLQPSTSLATRS  432
            W  FE+ GVPLPEV +   P  +E+ L++ +YQE V+ L++P + D LL+ + +S+   S
Sbjct  375  WFLFEDTGVPLPEVNIEVLPEPTEK-LTVLLYQEPVFSLSIPAQADYLLIGADASVVGDS  433

Query  433  QVLGMKMGSFEWLPAEQAHHASTLGIPYAQGHQCIIHCLTRVLERHTAEFIGVQETRYLM  492
            Q L   MG + WL  + AH A  +G+    G Q I   L  VL RH +EFIGVQETRYLM
Sbjct  434  QTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHMGEFIGVQETRYLM  493

Query  493  DAMEARYGELVKELQRQMPVGKVAETLQRLVEEDISIRDLRTIFGALVAWAPKEKDIVML  552
            +AME  Y+ELVKELQRQ+P+ K+AETLQRLV E +SIRDLR IFG+L+ WAP+EKD++ML
Sbjct  494  NAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLML  553

Query  553  TEYVRIALRRHVCSRFSKNKVWLPVLRLGEGAETLIRESIRQTSAGTYSALENKHSRLLL  612
            TEYVRIALRRH+  R++ +   LP+LR+GEG E L+RESIRQT+ GTY+AL ++H   +L
Sbjct  554  TEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQIL  613

Query  613  DKITGAFAENTDAVLLTSIDVRRFLRKIVERDIFALPVLSWQELGDEMNIKVVGTIELIG  672
            + I  A+ +++   ++TS+D RRFLRKI E  +F +P+LSWQELG+E  I+VV +I+L  
Sbjct  614  QLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESIDLSE  673

Query  673  DELDET  678
            +EL + 
Sbjct  674  EELADN  679

57) Y11_35391 in NC_017564


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  546 bits (2062),  Expect = 1e-156, Method: Compositional matrix adjust.
 Identities = 398/666 (60%), Positives = 538/666 (81%), Gaps = 6/666 (0%)

Query  14   AARQDVFLAVMLLVAIFMMILPLPTVMVDVLIAVNLSFSVILLMISIYLRDPLEFSVFPS  73
            A+RQD+ LA +LL+AI MM+LPLPT MVD+LI++NL FSVILL+I+IYL DPL++SVFPS
Sbjct  19   AGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPS  78

Query  74   lllittlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGLiiftiitvvqfivi  133
            LLLITTLYRL+LTIST+RLVLLQH+AG+IV+AFG+FVVGGNL+VGL++FTIIT+VQFIVI
Sbjct  79   LLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVI  138

Query  134  tKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDSAEAGRLRERVQKESRMFGAMDGA  193
            TKG ERVAEVSARFSLDGMPGKQMSIDGD+RAGVID+ +A  LR++VQ+ESR +GAMDGA
Sbjct  139  TKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGA  198

Query  194  MKFVKGDAiagiivilvniiggitigvLQHNMSAEEAMTTYAVLSVGDGLCAQIPSLLIS  253
            MKFVKGD+IAGIIV+LVNIIGGI I+++Q +MS  EA+ TY+VLS+GDGLC+QIPSLLIS
Sbjct  199  MKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLIS  258

Query  254  ITAGIIVTRVPDQDKQSLAKDLAIQVGRQPDALLLAAAILTVfallpgfpflifillaal  313
            ++AGIIVTRVP++ +Q+LA +L+ Q++RQP++L+L+A +L ++AL+PGFPF+ + +++AL
Sbjct  259  LSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAFFSAL  318

Query  314  vaTPAFLLYRKKKPSAGASGRGDKLPSPASAMTPGAVPLMLYCAPNLHYPHLGRDLDGLR  373
            +A P +L+ R+KK+  +A+G     ++   +M PGA PL+L  +P LH ++L RD+D++R
Sbjct  319  LALPIILI-RRKKSVVSANGVE---APEKDSMVPGACPLILRLSPTLHSADLIRDIDAMR  374

Query  374  WRWFEHLGVPLPEVVVRSDPSLAENELSIRVYQEQVLKLTLPFD-DVLLLQPSTSLATRS  432
            W  FE+ GVPLPEV +   P  +E+ L++ +YQE V+ L++P + D LL+ + +S+   S
Sbjct  375  WFLFEDTGVPLPEVNIEVLPEPTEK-LTVLLYQEPVFSLSIPAQADYLLIGADASVVGDS  433

Query  433  QVLGMKMGSFEWLPAEQAHHASTLGIPYAQGHQCIIHCLTRVLERHTAEFIGVQETRYLM  492
            Q L   MG + WL  + AH A  +G+    G Q I   L  VL RH +EFIGVQETRYLM
Sbjct  434  QTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHMGEFIGVQETRYLM  493

Query  493  DAMEARYGELVKELQRQMPVGKVAETLQRLVEEDISIRDLRTIFGALVAWAPKEKDIVML  552
            +AME  Y+ELVKELQRQ+P+ K+AETLQRLV E +SIRDLR IFG+L+ WAP+EKD++ML
Sbjct  494  NAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLML  553

Query  553  TEYVRIALRRHVCSRFSKNKVWLPVLRLGEGAETLIHESIRQTSAGTYSALENKHSRLLL  612
            TEYVRIALRRH+  R++ +   LP+LR+GEG E L++ESIRQT+ GTY+AL ++H   +L
Sbjct  554  TEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQIL  613

Query  613  DKITGAFAENTDAVLLTSIDVRRFLRKIVERDIFALPVLSWQELGDEMNIKVVGTIELIG  672
            + I  A+ +++   ++TS+D RRFLRKI E  +F +P+LSWQELG+E  I+VV +I+L  
Sbjct  614  QLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESIDLSE  673

Query  673  DELDET  678
            +EL + 
Sbjct  674  EELADN  679

58) Sbal117_2085 in NC_017579


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  516 bits (1948),  Expect = 1e-147, Method: Compositional matrix adjust.
 Identities = 366/678 (54%), Positives = 527/678 (78%), Gaps = 12/678 (1%)

Query  6    RWLSKAAGRHDIILSAMLMVAVFMMILPLPTPLVDVLIALNLGLSIVLLMIAIYIRDPLE  65
            +WLS  AGR+D++L+++L++A+ MM+LPLPT +VD+LI++NL +S++LL+IAIY+ DPL+
Sbjct  13   QWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLD  72

Query  66   FSVFPSlllittlyrlaltISTSRLILLQHDAGDIVYTFGNFVVGGNLAVGiiifaiiti  125
            +SVFPSLLLITTLYRL+LTISTSRL+LLQH+AG+IV +FG+FVVGGNL+VG+++F+IITI
Sbjct  73   LSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITI  132

Query  126  vqfivitKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGIIDAKEAKRQRAQVQKESQLY  185
            VQFIVITKG ERVAEVSARFSLDGMPGKQMSIDGD+RAG+IDA +A+  R +VQ+ES++ 
Sbjct  133  VQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFL  192

Query  186  GAMDGAMKFVKGDAIASiiviltniiggiAVGVMQHNMSAAEALNTYAVLSVGDGLIAQI  245
            GAMDGAMKFVKGD+IA+IIV+L NIIGGI ++++Q +MS +EA++TY+VLS+GDGL +QI
Sbjct  193  GAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQI  252

Query  246  PSLLISVTAGLIVTRVPGEQRQNLANELVMQVGRQPASLQMAGIVMFIFALIPGFPILVF  305
            PSLLIS++AG+IVTRVPGE+RQNLA EL  Q++RQP SL ++++V+ ++ALIPGFP++ +
Sbjct  253  PSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITL  312

Query  306  GTLGSAVLGASWWLTRQQKRASAQGDESHFTEAGKSEMTNVDNMAPGAVPLILYLGADVP  365
            + + SA+L+ +  L R++K   +         A   E  + D+M PGA PLIL L++ + 
Sbjct  313  AFF-SALLALPIILIRRKKSVVS---------ANGVEAPEKDSMVPGACPLILRLSPTLH  362

Query  366  INGVKEALQKLRWQWFEQLGVPLPEIQLQIAKKGTLGRCDVLLYQEPVLQLQLAPQ-EVL  424
              ++   ++ +RW  FE+ GVPLPE+++++    T  +  VLLYQEPV+ L +++Q + L
Sbjct  363  SADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPT-EKLTVLLYQEPVFSLSIPAQADYL  421

Query  425  LIDPIATIPCRVESIPFSNQRLHWIKGNALEQAEAQGLAVCRDEQIPAYVMGKVIDRYAG  484
            LI++ A++    +++P +  ++ W+  +  ++A++ GL V  + Q  + ++  V+ R  G
Sbjct  422  LIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHMG  481

Query  485  EFIGVQETRYLMDAMEARYGELVKELQRLLSVGKVAEILQRLVEEGISVRDLRTIFETLV  544
            EFIGVQETRYLM+AME  Y+ELVKELQR L++ K+AE LQRLV E +S+RDLR IF TL+
Sbjct  482  EFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLI  541

Query  545  EWVPKEKDIIMLTEYVRIALRRHIRRKFATPQGWIAVLMVGEGIENVIRESIRQSTAGSY  604
            +W P+EKD++MLTEYVRIALRRHI R++      +++L +GEGIEN++RESIRQ++ G+Y
Sbjct  542  DWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGTY  601

Query  605  SALDMAQTQQILTCIQEQLPPEQTCVLLTSLDVRRYLRKIVERELFSTPVLSFQELGDDA  664
            +AL   +  QIL  I++ L       ++TS+D RR+LRKI E  LF  P+LS QELG+++
Sbjct  602  TALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEES  661

Query  665  EIKVIGQVDLVGDMLDAA  682
             I+V+  +DL  + L   
Sbjct  662  LIQVVESIDLSEEELADN  679

59) Sbal_1969 in NC_009052


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  516 bits (1948),  Expect = 1e-147, Method: Compositional matrix adjust.
 Identities = 366/678 (54%), Positives = 527/678 (78%), Gaps = 12/678 (1%)

Query  6    RWLSKAAGRHDIILSAMLMVAVFMMILPLPTPLVDVLIALNLGLSIVLLMIAIYIRDPLE  65
            +WLS  AGR+D++L+++L++A+ MM+LPLPT +VD+LI++NL +S++LL+IAIY+ DPL+
Sbjct  13   QWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLD  72

Query  66   FSVFPSlllittlyrlaltISTSRLILLQHDAGDIVYTFGNFVVGGNLAVGiiifaiiti  125
            +SVFPSLLLITTLYRL+LTISTSRL+LLQH+AG+IV +FG+FVVGGNL+VG+++F+IITI
Sbjct  73   LSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITI  132

Query  126  vqfivitKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGIIDAKEAKRQRAQVQKESQLY  185
            VQFIVITKG ERVAEVSARFSLDGMPGKQMSIDGD+RAG+IDA +A+  R +VQ+ES++ 
Sbjct  133  VQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFL  192

Query  186  GAMDGAMKFVKGDAIASiiviltniiggiAVGVMQHNMSAAEALNTYAVLSVGDGLIAQI  245
            GAMDGAMKFVKGD+IA+IIV+L NIIGGI ++++Q +MS +EA++TY+VLS+GDGL +QI
Sbjct  193  GAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQI  252

Query  246  PSLLISVTAGLIVTRVPGEQRQNLANELVMQVGRQPASLQMAGIVMFIFALIPGFPILVF  305
            PSLLIS++AG+IVTRVPGE+RQNLA EL  Q++RQP SL ++++V+ ++ALIPGFP++ +
Sbjct  253  PSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITL  312

Query  306  GTLGSAVLGASWWLTRQQKRASAQGDESHFTEAGKSEMTNVDNMAPGAVPLILYLGADVP  365
            + + SA+L+ +  L R++K   +         A   E  + D+M PGA PLIL L++ + 
Sbjct  313  AFF-SALLALPIILIRRKKSVVS---------ANGVEAPEKDSMVPGACPLILRLSPTLH  362

Query  366  INGVKEALQKLRWQWFEQLGVPLPEIQLQIAKKGTLGRCDVLLYQEPVLQLQLAPQ-EVL  424
              ++   ++ +RW  FE+ GVPLPE+++++    T  +  VLLYQEPV+ L +++Q + L
Sbjct  363  SADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPT-EKLTVLLYQEPVFSLSIPAQADYL  421

Query  425  LIDPIATIPCRVESIPFSNQRLHWIKGNALEQAEAQGLAVCRDEQIPAYVMGKVIDRYAG  484
            LI++ A++    +++P +  ++ W+  +  ++A++ GL V  + Q  + ++  V+ R  G
Sbjct  422  LIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHMG  481

Query  485  EFIGVQETRYLMDAMEARYGELVKELQRLLSVGKVAEILQRLVEEGISVRDLRTIFETLV  544
            EFIGVQETRYLM+AME  Y+ELVKELQR L++ K+AE LQRLV E +S+RDLR IF TL+
Sbjct  482  EFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLI  541

Query  545  EWVPKEKDIIMLTEYVRIALRRHIRRKFATPQGWIAVLMVGEGIENVIRESIRQSTAGSY  604
            +W P+EKD++MLTEYVRIALRRHI R++      +++L +GEGIEN++RESIRQ++ G+Y
Sbjct  542  DWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGTY  601

Query  605  SALDMAQTQQILTCIQEQLPPEQTCVLLTSLDVRRYLRKIVERELFSTPVLSFQELGDDA  664
            +AL   +  QIL  I++ L       ++TS+D RR+LRKI E  LF  P+LS QELG+++
Sbjct  602  TALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEES  661

Query  665  EIKVIGQVDLVGDMLDAA  682
             I+V+  +DL  + L   
Sbjct  662  LIQVVESIDLSEEELADN  679

60) Sbal195_2273 in NC_009997


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  515 bits (1943),  Expect = 3e-147, Method: Compositional matrix adjust.
 Identities = 361/680 (54%), Positives = 528/680 (78%), Gaps = 16/680 (2%)

Query  6    RWLSKAAGRHDIILSAMLMVAVFMMILPLPTPLIDVLIALNLGLSIVLLMIAIYIRDPLE  65
            +WLS  AGR+D++L+++L++A+ MM+LPLPT ++D+LI++NL +S++LL+IAIY+ DPL+
Sbjct  13   QWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLD  72

Query  66   FSVFPSlllittlyrlaltISTSRLILLQHDAGDIVYTFGNFVVGGNLAVGiiifaiiti  125
            +SVFPSLLLITTLYRL+LTISTSRL+LLQH+AG+IV +FG+FVVGGNL+VG+++F+IITI
Sbjct  73   LSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITI  132

Query  126  vqfivitKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGIIDAKEAKRQRAQVQKESQLY  185
            VQFIVITKG ERVAEVSARFSLDGMPGKQMSIDGD+RAG+IDA +A+  R +VQ+ES++ 
Sbjct  133  VQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFL  192

Query  186  GAMDGAMKFVKGDAIASiiviltniiggiAVGVMQHNMSAAEALNTYAVLSVGDGLIAQI  245
            GAMDGAMKFVKGD+IA+IIV+L NIIGGI ++++Q +MS +EA++TY+VLS+GDGL +QI
Sbjct  193  GAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQI  252

Query  246  PSLLISVTAGLIVTRVPGEQRQNLANELVMQVGRQPASLQMAGIVMFIFALIPGFPILVF  305
            PSLLIS++AG+IVTRVPGE+RQNLA EL  Q++RQP SL ++++V+ ++ALIPGFP++ +
Sbjct  253  PSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITL  312

Query  306  GTLGSVVLGASLWLKRQQKRASAQGEESHFTDAGKSDTANVDNMAPGAVPLILYLGADVP  365
            + +++++  + + ++R++   SA+G           ++++ D+M PGA PLIL L++ + 
Sbjct  313  AFFSALLALPIILIRRKKSVVSANG----------VEAPEKDSMVPGACPLILRLSPTLH  362

Query  366  IHGVKEALQKLRWQWFEQLGVPLPEIQLQI--AKKGSLGCCDVLLYQESVLQLQLVPQEA  423
              ++   ++ +RW  FE+ GVPLPE+++++       L    VLLYQE+V+ L + +Q  
Sbjct  363  SADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLT---VLLYQEPVFSLSIPAQAD  419

Query  424  -LLIDSIATIPCRVESIPFSNQRLHWIKGNALEQAEAQGLAVCRDEQIPAYVMGKVIDRY  482
             LLI++ A++    +++P +  ++ W+  +  ++A++ GL V  + Q  + ++  V+ R 
Sbjct  420  YLLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRH  479

Query  483  AGEFIGVQETRYLMDAMEARYGELVKELQRLLSVGKVAEILQRLVEEGISVRDLRTIFET  542
             GEFIGVQETRYLM+AME  Y+ELVKELQR L++ K+AE LQRLV E +S+RDLR IF T
Sbjct  480  MGEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGT  539

Query  543  LVEWVPKEKDIIMLTEYVRIALRRHIRRKFATPQGWIAVLMVGEGIENVIRESIRQSTAG  602
            L++W P+EKD++MLTEYVRIALRRHI R++      +++L +GEGIEN++RESIRQ++ G
Sbjct  540  LIDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMG  599

Query  603  SYSALDMAQTQQILTCIQEQLPPEQTCVLLTSLDVRRYLRKIVERELFSTPVLSFQELGD  662
            +Y+AL   +  QIL  I++ L       ++TS+D RR+LRKI E  LF  P+LS QELG+
Sbjct  600  TYTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGE  659

Query  663  DAEIKVIGQVDLVGEVLDAA  682
            ++ I+V+  +DL  E L   
Sbjct  660  ESLIQVVESIDLSEEELADN  679

61) Sbal678_2283 in NC_016901


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  515 bits (1943),  Expect = 3e-147, Method: Compositional matrix adjust.
 Identities = 361/680 (54%), Positives = 528/680 (78%), Gaps = 16/680 (2%)

Query  6    RWLSKAAGRHDIILSAMLMVAVFMMILPLPTPLIDVLIALNLGLSIVLLMIAIYIRDPLE  65
            +WLS  AGR+D++L+++L++A+ MM+LPLPT ++D+LI++NL +S++LL+IAIY+ DPL+
Sbjct  13   QWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLD  72

Query  66   FSVFPSlllittlyrlaltISTSRLILLQHDAGDIVYTFGNFVVGGNLAVGiiifaiiti  125
            +SVFPSLLLITTLYRL+LTISTSRL+LLQH+AG+IV +FG+FVVGGNL+VG+++F+IITI
Sbjct  73   LSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITI  132

Query  126  vqfivitKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGIIDAKEAKRQRAQVQKESQLY  185
            VQFIVITKG ERVAEVSARFSLDGMPGKQMSIDGD+RAG+IDA +A+  R +VQ+ES++ 
Sbjct  133  VQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFL  192

Query  186  GAMDGAMKFVKGDAIASiiviltniiggiAVGVMQHNMSAAEALNTYAVLSVGDGLIAQI  245
            GAMDGAMKFVKGD+IA+IIV+L NIIGGI ++++Q +MS +EA++TY+VLS+GDGL +QI
Sbjct  193  GAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQI  252

Query  246  PSLLISVTAGLIVTRVPGEQRQNLANELVMQVGRQPASLQMAGIVMFIFALIPGFPILVF  305
            PSLLIS++AG+IVTRVPGE+RQNLA EL  Q++RQP SL ++++V+ ++ALIPGFP++ +
Sbjct  253  PSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITL  312

Query  306  GTLGSVVLGASLWLKRQQKRASAQGEESHFTDAGKSDTANVDNMAPGAVPLILYLGADVP  365
            + +++++  + + ++R++   SA+G           ++++ D+M PGA PLIL L++ + 
Sbjct  313  AFFSALLALPIILIRRKKSVVSANG----------VEAPEKDSMVPGACPLILRLSPTLH  362

Query  366  IHGVKEALQKLRWQWFEQLGVPLPEIQLQI--AKKGSLGCCDVLLYQESVLQLQLVPQEA  423
              ++   ++ +RW  FE+ GVPLPE+++++       L    VLLYQE+V+ L + +Q  
Sbjct  363  SADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLT---VLLYQEPVFSLSIPAQAD  419

Query  424  -LLIDSIATIPCRVESIPFSNQRLHWIKGNALEQAEAQGLAVCRDEQIPAYVMGKVIDRY  482
             LLI++ A++    +++P +  ++ W+  +  ++A++ GL V  + Q  + ++  V+ R 
Sbjct  420  YLLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRH  479

Query  483  AGEFIGVQETRYLMDAMEARYGELVKELQRLLSVGKVAEILQRLVEEGISVRDLRTIFET  542
             GEFIGVQETRYLM+AME  Y+ELVKELQR L++ K+AE LQRLV E +S+RDLR IF T
Sbjct  480  MGEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGT  539

Query  543  LVEWVPKEKDIIMLTEYVRIALRRHIRRKFATPQGWIAVLMVGEGIENVIRESIRQSTAG  602
            L++W P+EKD++MLTEYVRIALRRHI R++      +++L +GEGIEN++RESIRQ++ G
Sbjct  540  LIDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMG  599

Query  603  SYSALDMAQTQQILTCIQEQLPPEQTCVLLTSLDVRRYLRKIVERELFSTPVLSFQELGD  662
            +Y+AL   +  QIL  I++ L       ++TS+D RR+LRKI E  LF  P+LS QELG+
Sbjct  600  TYTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGE  659

Query  663  DAEIKVIGQVDLVGEVLDAA  682
            ++ I+V+  +DL  E L   
Sbjct  660  ESLIQVVESIDLSEEELADN  679

62) Sbal175_2396 in NC_017571


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  510 bits (1922),  Expect = 1e-145, Method: Compositional matrix adjust.
 Identities = 363/678 (54%), Positives = 529/678 (79%), Gaps = 12/678 (1%)

Query  6    RWLSKAAGRHDIILSAMLMVAVFMMILPLPTPLVDVLIALNLGLSIVLLMIAIYIRDPLE  65
            +WLS  AGR+D++L+++L++A+ MM+LPLPT +VD+LI++NL +S++LL+IAIY+ DPL+
Sbjct  13   QWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLD  72

Query  66   FSVFPSlllittlyrlaltISTSRLILLQHDAGDIVYTFGNFVVGGNLAVGiiifaiiti  125
            +SVFPSLLLITTLYRL+LTISTSRL+LLQH+AG+IV +FG+FVVGGNL+VG+++F+IITI
Sbjct  73   LSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITI  132

Query  126  vqfivitKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGIIDAKEAKRQRAQVQKESQLY  185
            VQFIVITKG ERVAEVSARFSLDGMPGKQMSIDGD+RAG+IDA +A+  R +VQ+ES++ 
Sbjct  133  VQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFL  192

Query  186  GAMDGAMKFVKGDAIASiiviltniiggiAVGVMQHNMSAAEALNTYAVLSVGDGLIAQI  245
            GAMDGAMKFVKGD+IA+IIV+L NIIGGI ++++Q +MS +EA++TY+VLS+GDGL +QI
Sbjct  193  GAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQI  252

Query  246  PSLLISVTAGLIVTRVPGEQRQNLANELVMQVGRQPASLQMAGIVMFIFALIPGFPILVF  305
            PSLLIS++AG+IVTRVPGE+RQNLA EL  Q++RQP SL ++++V+ ++ALIPGFP++ +
Sbjct  253  PSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITL  312

Query  306  GTLGSVVLGASLWLTRQQKRASAQGDESHFTEAGKSEMANVDNMAPGAVPLILYLGADVP  365
            + +++ +L+ ++ L R++K   +         A   E ++ D+M PGA PLIL L++ + 
Sbjct  313  AFFSA-LLALPIILIRRKKSVVS---------ANGVEAPEKDSMVPGACPLILRLSPTLH  362

Query  366  IHGVKEALQKLRWQWFEQLGVPLPEIQLQIAKKGTLGRCDVLLYQEPVLQLQLAPQ-EVL  424
              ++   ++ +RW  FE+ GVPLPE+++++    T  +  VLLYQEPV+ L +++Q + L
Sbjct  363  SADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPT-EKLTVLLYQEPVFSLSIPAQADYL  421

Query  425  LIDPIATIPCRVESIPFSNQRLHWIKGNaleqaeaqglalCRDEQIPAYVMGKVIDRYAG  484
            LI++ A++    +++P +  ++ W+  +  ++A++ GL +  + Q  + ++  V+ R  G
Sbjct  422  LIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHMG  481

Query  485  EFIGVQETRYLMDAMEARYGELVKELQRLLSVGKVAEILQRLVEEGISVRDLRTIFETLV  544
            EFIGVQETRYLM+AME  Y+ELVKELQR L++ K+AE LQRLV E +S+RDLR IF TL+
Sbjct  482  EFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLI  541

Query  545  EWVPKEKDIIMLTEYVRIALRRHIRRKFATPQGWIAVLMVGEGIENVIRESIRQSTAGSY  604
            +W P+EKD++MLTEYVRIALRRHI R++      +++L +GEGIEN++RESIRQ++ G+Y
Sbjct  542  DWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGTY  601

Query  605  SALDMAQTQQILTCIQEQLPPEQTCVLLTSLDVRRYLRKIVERELFSTPVLSFQELGDDA  664
            +AL   +  QIL  I++ L       ++TS+D RR+LRKI E  LF  P+LS QELG+++
Sbjct  602  TALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEES  661

Query  665  EIKVIGQVDLVGDMLDAA  682
             I+V+  +DL  + L   
Sbjct  662  LIQVVESIDLSEEELADN  679

63) SVI_2235 in NC_014012


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  485 bits (1829),  Expect = 3e-138, Method: Compositional matrix adjust.
 Identities = 351/677 (52%), Positives = 516/677 (77%), Gaps = 10/677 (1%)

Query  6    RWLNIAGGRLDIILSAMLMVAVFMMILPLPTALIDLLIAFNLCLSILLLMIAIYIRDPLE  65
            +WL++ +GR D++L+++L++A+ MM+LPLPT ++D+LI++NL +S++LL+IAIY+ DPL+
Sbjct  13   QWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLD  72

Query  66   FSVFPSlllittlyrlaltVSTSRLILLQHDAGEIVYTFGKFVVGGNLAVGiiiftiiti  125
            +SVFPSLLLITTLYRL+LT+STSRL+LLQH+AG+IV +FGKFVVGGNL+VG+++FTIITI
Sbjct  73   LSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITI  132

Query  126  vqfivitKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGIIDAQEAKRQRTQVQKESQLY  185
            VQFIVITKG ERVAEVSARFSLD+MPGKQMSIDGD+RAG+IDA++A+  R +VQ+ES++ 
Sbjct  133  VQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFL  192

Query  186  GAMDGAMKFVKGDaiasiivilaniiggiavgvMQHGMSASEAVNTYAILSVGDGLISQI  245
            GAMDGAMKFVKGD+IA+IIV+L NIIGGI ++++Q +MS SEAV+TY++LS+GDGL +QI
Sbjct  193  GAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQI  252

Query  246  PALLISLTAGLIVTRVPGEKRQNLANELVSQMGRQPSSLQMAGIMMFVFAIIPGFPLItf  305
            P+LLISL+AG+IVTRVPGEKRQNLA EL SQ++RQP SL ++++++ ++A+IPGFP+IT+
Sbjct  253  PSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITL  312

Query  306  gflgsltfgfsWWLIRKKKIAEEQGSPHFSDTSASGEVDADGNMSPGAIPVMLCLGEDVS  365
            +F+++L       + RKK +   +G           E    ++M PGA P++L L+  + 
Sbjct  313  AFFSALLALPIILIRRKKSVVSANGV----------EAPEKDSMVPGACPLILRLSPTLH  362

Query  366  ITGVKEALQKLRWQLFEELGVPLPEIQLQVIKNGRKGQFDvllyqevvlqlqIDPEESLL  425
             +++   ++ +RW LFE+ GVPLPE++++V+ +       +L  + V         + LL
Sbjct  363  SADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSIPAQADYLL  422

Query  426  VDQNVTLLSRVESLNFNGEELHWIKGNVVEQALEQGLPVLSKETIPAYLVGKVIRRYAGE  485
            ++ + ++++  ++L     ++ W+  ++ ++A   GL V++     + L+  V+ R  GE
Sbjct  423  IGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHMGE  482

Query  486  FIGVQETRYLMDAIEVKYGELVKELQRVLSVGKVADILQRLVDEGIAIRDLRTIFETLVE  545
            FIGVQETRYLM+A+E +Y+ELVKELQR L++ K+A+ LQRLV E ++IRDLR IF TL++
Sbjct  483  FIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLID  542

Query  546  WVAKEKDVIMLTEYVRIALRRHIRRKFVSPQGWISVLMVGDGIENLIRESIRQSTAGSYS  605
            W ++EKDV+MLTEYVRIALRRHI R++ +    +++L +G+GIENL+RESIRQ++ G+Y+
Sbjct  543  WAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGTYT  602

Query  606  ALDLEQSNLILTAVVQQLPAQQSCVLLTSLDVRRYLRKIVEKELFMTPVLSFQELGDDAE  665
            AL   +   IL  + Q L       ++TS+D RR+LRKI E  LF  P+LS QELG+++ 
Sbjct  603  ALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESL  662

Query  666  IKVMAHVDLVGESLDAA  682
            I+V+  +DL  E L   
Sbjct  663  IQVVESIDLSEEELADN  679

64) NT01EI_0958 in NC_012779


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  479 bits (1804),  Expect = 3e-136, Method: Compositional matrix adjust.
 Identities = 325/638 (51%), Positives = 484/638 (76%), Gaps = 19/638 (2%)

Query  46   NLTLSITLLMMAVYIREPMEFSAFPSVLLITTLYRLALTISTSRLILLQHDAGEIVYTFG  105
            NL +S+ LL++A+Y+ +P+++S FPS+LLITTLYRL+LTISTSRL+LLQH+AG+IV +FG
Sbjct  53   NLMFSVILLLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFG  112

Query  106  NFAVGGNLAVGLIVFAIITVVQFIVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGI  165
            +F VGGNL+VGL+VF+IIT+VQFIVITKG ERVAEVSARFSLD+MPGKQMSIDGD+RAG+
Sbjct  113  KFVVGGNLTVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGV  172

Query  166  IDATEARRQRALVQKESQLYGAMDGAMKFVKGDAIASiivilvnivggicvgvFMHEMSA  225
            IDA +AR  R  VQ+ES++ GAMDGAMKFVKGD+IA+IIV+LVNI+GGI +++   +MS 
Sbjct  173  IDADHARTLRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSM  232

Query  226  GDAAATYAILSVGDGLIAQIPALLISIAAGIIVTRVPGENRRNLASELTEQILRQRQalw  285
            ++A  TY++LS+GDGL +QIP+LLIS++AGIIVTRVPGE+R+NLA+EL+ QI RQ Q+L 
Sbjct  233  SEAVHTYSVLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLI  292

Query  286  ivaavlalfaalPGFPTLIFLSLG--AGLAAIAYSLRRKEQQhsphtashsaasRDESGQ  343
            + A VL L+A +PGFP   F++L+  ++L A++  L R+ ++    + +  A+ +D    
Sbjct  293  LTAVVLMLLALIPGFP---FITLAFFSALLALPIILIRR-KKSVVSANGVEAPEKDSMVP  348

Query  344  EGAPLLIGATplalrlpdalardpSLTQALATLRAEKLEQAGLPLPEIQIQTDNGFGPDQ  403
             + PL++  +        +  + + L + + ++R   +E++G+PLPE++I+       ++
Sbjct  349  GACPLILRLS--------PTLHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPE-PTEK  399

Query  404  FALLLYQEPVLAITLPHLALLDITAPPLRQADHRETLPFGGITLQWLSLEQAESSATIGV  463
            +++LLYQEPV+++++P  A   + ++     ++ +TLP G   + WL+ + A+ +  +G+
Sbjct  400  LTVLLYQEPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGL  459

Query  464  NSYQGNARIAYLVSLALDRYGAEFIGVQEARYLMDQMEQRYGELVKELQRQLPVARIADV  523
            + + G+ RI+ L+   L R  +EFIGVQE+RYLM+ ME+ Y+ELVKELQRQLP+ +IA+ 
Sbjct  460  DVFAGSQRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAET  519

Query  524  LQRLVAESVSIRDLRSIFEALVEWAPREKDPVMLAEYARLALRRHIVGR-QRHGQPWVKA  582
            LQRLV+E VSIRDLR IF +L++WAPREKD +ML+EY R+ALRRHI+ R + +G+P +  
Sbjct  520  LQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKP-LPI  578

Query  583  WLIGSHIEQMMRESIRQTSAGSYSALSPQENQAILAEIHAALERSGGANTAIVTAIDIRR  642
              IG  IE+++RESIRQT+ G+Y+ALS++++  IL  I+ AL +S  A+  IVT++D RR
Sbjct  579  LRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQS--AKLFIVTSVDTRR  636

Query  643  FIRKLIERELFTTPVLSFQELDDEAELKVLGHIELIGD  680
            F+RK+ E  LF  P+LS QEL++E+ ++V+  I+L  +
Sbjct  637  FLRKITEATLFDVPILSWQELGEESLIQVVESIDLSEE  674

65) escV in NC_013364


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  472 bits (1778),  Expect = 3e-134, Method: Compositional matrix adjust.
 Identities = 314/641 (49%), Positives = 499/641 (78%), Gaps = 12/641 (1%)

Query  33   PLPTVVVDIIIAINISTALLLLMLSIYIKNPLELTSFPTILLITTLMRLSLSVSTTRLIL  92
            PLPT +VDI+I+IN+  +++LL+++IY+ +PL+L+ FP++LLITTL RLSL++ST+RL+L
Sbjct  40   PLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVL  99

Query  93   LHHDAGDIIYSfgnfvvggnivvglvifTIITIVQFMVITKGAERVAEVSARFSLDGMPG  152
            L+H+AG+I+ +FG+FVVGGN+ VGLV+FTIITIVQF+VITKG ERVAEVSARFSLDGMPG
Sbjct  100  LQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPG  159

Query  153  KQMSIDGDMRAGVIDPLEAKVLRSRVQKESQFYGSMDGAMKFVKGDAIAGIIIVLVNLFG  212
            KQMSIDGD+RAGVID+ +A+ LR +VQ+ES+F G+MDGAMKFVKGD+IAGII+VLVN++G
Sbjct  160  KQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIG  219

Query  213  GVLIGMWQFDMPFSEALSLFSVLSVGDALVAQIPALIISVTAGVVVTRVPGESEKEENLA  272
            G++I++ Q+DM+ SEA+  +SVLS+GD+L +QIP+L+IS++AG++VTRVPG  EK +NLA
Sbjct  220  GIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSAGIIVTRVPG--EKRQNLA  277

Query  273  GDIVQQVSVNSRPFLISAALMLVMAIIPGFPTLVFLFLAVCLLGIAWKLQKKRTFGTGNN  332
             ++  Q++ ++++++++A +++++A+IPGFP + + F++  LL+++  L +++    + N
Sbjct  278  TELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAFFSA-LLALPIILIRRKKSVVSAN  336

Query  333  KDAMGADLSNSQNISPGAEPLILNLSNNIYSSDIAQQIEVMRWNFFEESGIPLPKIIVNP  392
                G + ++ +++ PGA PLIL LS  + S+D+ ++I+ MRW +FE++G+PLP + ++ 
Sbjct  337  ----GVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMRWFLFEDTGVPLPEVNIEV  392

Query  393  VKNNDSAIEFLLYQESIYKDTLIDDTVYFEAGHAEISFEFVQEKLST--NSIVYKTNEAN  450
            + +    +  LLYQE+++  ++  ++ Y+  G A+ S     + L+     I   T++  
Sbjct  393  LPEPTEKLTVLLYQEPVFSLSIPAQADYLLIG-ADASVVGDSQTLPNGMGQICWLTKDMA  451

Query  451  QQLAHLSGMDVYATTNDKITFLLKKLVLSNAKEFIGVQETRYLMDIMERKYNELVKELQR  510
            ++ A+  G+DV+A + ++I+ LLK ++L +  EFIGVQETRYLM+ ME++Y+ELVKELQR
Sbjct  452  HK-AQGFGLDVFAGS-QRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQR  509

Query  511  QLGLSKIVDILQRLVEENISIRDLRTIFETLIFWSTKEKDVVILCEYVRIALRRHILGRY  570
            QL ++KI + LQRLV E +SIRDLR IF TLI W+ +EKDV++L EYVRIALRRHIL R 
Sbjct  510  QLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRL  569

Query  571  SVRGTLLNVWLIGSDIENELRESIRQTSSGSYLNISPERSEQIIGFLKNIMNPTGNGVIL  630
            +  G  L +  IG +IEN +RESIRQT+ G+Y  +S+ +  QI+ ++ + ++ +++  I+
Sbjct  570  NPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQSAKLFIV  629

Query  631  TALDIRRYVKKMIEGSFPSVPVLSFQEVGNNIELKVLGTVN  671
            T++D RR+++K+ E+++  VP+LS QE+G++  ++V+ +++
Sbjct  630  TSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670

66) esaV in NC_013508


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  471 bits (1774),  Expect = 6e-134, Method: Compositional matrix adjust.
 Identities = 329/638 (52%), Positives = 484/638 (76%), Gaps = 19/638 (2%)

Query  46   NLTLSITLLMMAVYIREPMEFSAFPSVLLITTLYRLALTISTSRLILLQHDAGEIVYTFG  105
            NL +S+ LL++A+Y+ +P+++S FPS+LLITTLYRL+LTISTSRL+LLQH+AG+IV +FG
Sbjct  53   NLMFSVILLLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFG  112

Query  106  NFAVGGNLAVGLIVFAIITVVQFIVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGI  165
            +F VGGNL+VGL+VF+IIT+VQFIVITKG ERVAEVSARFSLD+MPGKQMSIDGD+RAG+
Sbjct  113  KFVVGGNLTVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGV  172

Query  166  IDATEARRQRALVQKESQLYGAMDGAMKFVKGDAIASiivilvnivggicvgvFMHEMSA  225
            IDA +AR  R  VQ+ES++ GAMDGAMKFVKGD+IA+IIV+LVNI+GGI +++   +MS 
Sbjct  173  IDADHARTLRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSM  232

Query  226  GDAAATYAILSVGDGLIAQIPALLISIAAGIIVTRVPGENRRNLASELTEQILRQRQalw  285
            ++A  TY++LS+GDGL +QIP+LLIS++AGIIVTRVPGE+R+NLA+EL+ QI RQ Q+L 
Sbjct  233  SEAVHTYSVLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLI  292

Query  286  ivaavlalfaalPGFPTlifiglgaglaaiaYSLRRKERQRSPLAAGHSASDHDESGQEG  345
            + A VL L+A +PGFP + +  ++A LA     +RRK    S  A G  A++ D     +
Sbjct  293  LTAVVLMLLALIPGFPFITLAFFSALLALPIILIRRKKSVVS--ANGVEAPEKDSMVPGA  350

Query  346  APLLIGATplalrlpdalardpTLAQALATLRAEKLELAGLPLPEIQIQ--PDSSLGPDQ  403
             PL++  +        +  + + L + + ++R   +E +G+PLPE++I+  P+++   ++
Sbjct  351  CPLILRLS--------PTLHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPT---EK  399

Query  404  FTLLLYQEPVLSMtlphlalldlaaptlRQVDHRETLPFGGITLQWIAQEQAEGSAAIGV  463
            +T+LLYQEPV+S+++P  A   L ++    V++ +TLP G   + W++++ A+ + ++G+
Sbjct  400  LTVLLYQEPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGL  459

Query  464  NRYQGNARIAYLVSLALDRYGAEFIGVQEARYLMDQMEQRYGELVKELQRQLPVARVADV  523
            + + G+ RI+ L+   L R  +EFIGVQE+RYLM+ ME+ Y+ELVKELQRQLP+ ++A+ 
Sbjct  460  DVFAGSQRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAET  519

Query  524  LQRLVAESVSIRDLRAIFEALVEWAPREKDPVMLAEYARLALRRHIIGR-QRHGQPWVKA  582
            LQRLV+E VSIRDLR IF +L++WAPREKD +ML+EY R+ALRRHI+ R + +G+P +  
Sbjct  520  LQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKP-LPI  578

Query  583  WLIGSHIEQKVRESVRQTSAGSYSALSQQENQAILTEIHAALERSGAVNTAIVTAIDIRR  642
              IG  IE+ VRES+RQT+ G+Y+ALS +++  IL  I+ AL +S+ +   IVT++D RR
Sbjct  579  LRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQSAKLF--IVTSVDTRR  636

Query  643  FIRKLIERELFTTAVLSFQELDDEAELKVLGHIELIGD  680
            F+RK+ E  LF  ++LS QEL++E+ ++V+  I+L  +
Sbjct  637  FLRKITEATLFDVPILSWQELGEESLIQVVESIDLSEE  674

67) esaV in NC_017309


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  471 bits (1774),  Expect = 6e-134, Method: Compositional matrix adjust.
 Identities = 329/638 (52%), Positives = 484/638 (76%), Gaps = 19/638 (2%)

Query  46   NLTLSITLLMMAVYIREPMEFSAFPSVLLITTLYRLALTISTSRLILLQHDAGEIVYTFG  105
            NL +S+ LL++A+Y+ +P+++S FPS+LLITTLYRL+LTISTSRL+LLQH+AG+IV +FG
Sbjct  53   NLMFSVILLLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFG  112

Query  106  NFAVGGNLAVGLIVFAIITVVQFIVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGI  165
            +F VGGNL+VGL+VF+IIT+VQFIVITKG ERVAEVSARFSLD+MPGKQMSIDGD+RAG+
Sbjct  113  KFVVGGNLTVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGV  172

Query  166  IDATEARRQRALVQKESQLYGAMDGAMKFVKGDAIASiivilvnivggicvgvFMHEMSA  225
            IDA +AR  R  VQ+ES++ GAMDGAMKFVKGD+IA+IIV+LVNI+GGI +++   +MS 
Sbjct  173  IDADHARTLRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSM  232

Query  226  GDAAATYAILSVGDGLIAQIPALLISIAAGIIVTRVPGENRRNLASELTEQILRQRQalw  285
            ++A  TY++LS+GDGL +QIP+LLIS++AGIIVTRVPGE+R+NLA+EL+ QI RQ Q+L 
Sbjct  233  SEAVHTYSVLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLI  292

Query  286  ivaavlalfaalPGFPTlifiglgaglaaiaYSLRRKERQRSPLAAGHSASDHDESGQEG  345
            + A VL L+A +PGFP + +  ++A LA     +RRK    S  A G  A++ D     +
Sbjct  293  LTAVVLMLLALIPGFPFITLAFFSALLALPIILIRRKKSVVS--ANGVEAPEKDSMVPGA  350

Query  346  APLLIGATplalrlpdalardpTLAQALATLRAEKLELAGLPLPEIQIQ--PDSSLGPDQ  403
             PL++  +        +  + + L + + ++R   +E +G+PLPE++I+  P+++   ++
Sbjct  351  CPLILRLS--------PTLHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPT---EK  399

Query  404  FTLLLYQEPVLSMtlphlalldlaaptlRQVDHRETLPFGGITLQWIAQEQAEGSAAIGV  463
            +T+LLYQEPV+S+++P  A   L ++    V++ +TLP G   + W++++ A+ + ++G+
Sbjct  400  LTVLLYQEPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGL  459

Query  464  NRYQGNARIAYLVSLALDRYGAEFIGVQEARYLMDQMEQRYGELVKELQRQLPVARVADV  523
            + + G+ RI+ L+   L R  +EFIGVQE+RYLM+ ME+ Y+ELVKELQRQLP+ ++A+ 
Sbjct  460  DVFAGSQRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAET  519

Query  524  LQRLVAESVSIRDLRAIFEALVEWAPREKDPVMLAEYARLALRRHIIGR-QRHGQPWVKA  582
            LQRLV+E VSIRDLR IF +L++WAPREKD +ML+EY R+ALRRHI+ R + +G+P +  
Sbjct  520  LQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKP-LPI  578

Query  583  WLIGSHIEQKVRESVRQTSAGSYSALSQQENQAILTEIHAALERSGAVNTAIVTAIDIRR  642
              IG  IE+ VRES+RQT+ G+Y+ALS +++  IL  I+ AL +S+ +   IVT++D RR
Sbjct  579  LRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQSAKLF--IVTSVDTRR  636

Query  643  FIRKLIERELFTTAVLSFQELDDEAELKVLGHIELIGD  680
            F+RK+ E  LF  ++LS QEL++E+ ++V+  I+L  +
Sbjct  637  FLRKITEATLFDVPILSWQELGEESLIQVVESIDLSEE  674

68) ETAC_04215 in NC_020796


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  470 bits (1772),  Expect = 1e-133, Method: Compositional matrix adjust.
 Identities = 329/638 (52%), Positives = 483/638 (76%), Gaps = 19/638 (2%)

Query  46   NLTLSITLLMMAVYIREPMEFSAFPSVLLITTLYRLALTISTSRLILLQHDAGEIVYTFG  105
            NL +S+ LL++A+Y+ +P+++S FPS+LLITTLYRL+LTISTSRL+LLQH+AG+IV +FG
Sbjct  53   NLMFSVILLLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFG  112

Query  106  NFAVGGNLAVGLIVFAIITVVQFIVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGI  165
            +F VGGNL+VGL+VF+IIT+VQFIVITKG ERVAEVSARFSLD+MPGKQMSIDGD+RAG+
Sbjct  113  KFVVGGNLTVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGV  172

Query  166  IDATEARRQRALVQKESQLYGAMDGAMKFVKGDAIASiivilvnivggicvgvFMHEMSA  225
            IDA +AR  R  VQ+ES++ GAMDGAMKFVKGD+IA+IIV+LVNI+GGI +++   +MS 
Sbjct  173  IDADHARTLRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSM  232

Query  226  GDAAATYAILSVGDGLIAQIPALLISIAAGIIVTRVPGENRRNLASELTEQILRQRQalw  285
            ++A  TY++LS+GDGL +QIP+LLIS++AGIIVTRVPGE+R+NLA+EL+ QI RQ Q+L 
Sbjct  233  SEAVHTYSVLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLI  292

Query  286  ivaavlalfaalPGFPTlifiglgaglaaiaYSLRRKERQRSPLAAGHSASDHDESGQEG  345
            + A VL L+A +PGFP + +  ++A LA     +RRK    S  A G  A++ D     +
Sbjct  293  LTAVVLMLLALIPGFPFITLAFFSALLALPIILIRRKKSVVS--ANGVEAPEKDSMVPGA  350

Query  346  APLLIGATplalrlpdalardpTLAQALATLRAEKLELAGLPLPEIQIQ--PDSGLGPDQ  403
             PL++  +        +  + + L + + ++R   +E +G+PLPE++I+  P++    ++
Sbjct  351  CPLILRLS--------PTLHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEP---TEK  399

Query  404  FTLLLYQEPVLSMtlphlalldlaaptlRQVDHRETLPFGGITLQWIAQEQAEGSAAIGV  463
            +T+LLYQEPV+S+++P  A   L ++    V++ +TLP G   + W++++ A+ + ++G+
Sbjct  400  LTVLLYQEPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGL  459

Query  464  NRYQGNARIAYLVSLALDRYGAEFIGVQEARYLMDQMEQRYGELVKELQRQLPVARVADV  523
            + + G+ RI+ L+   L R  +EFIGVQE+RYLM+ ME+ Y+ELVKELQRQLP+ ++A+ 
Sbjct  460  DVFAGSQRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAET  519

Query  524  LQRLVAESVSIRDLRAIFEALVEWAPREKDPVMLAEYARLALRRHIIGR-QRHGQPWVKA  582
            LQRLV+E VSIRDLR IF +L++WAPREKD +ML+EY R+ALRRHI+ R + +G+P +  
Sbjct  520  LQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKP-LPI  578

Query  583  WLIGSHIEQKVRESVRQTSAGSYSALSQQENQAILTEIHAALERSGAVNTAIVTAIDIRR  642
              IG  IE+ VRES+RQT+ G+Y+ALS +++  IL  I+ AL +S+ +   IVT++D RR
Sbjct  579  LRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQSAKLF--IVTSVDTRR  636

Query  643  FIRKLIERELFTTAVLSFQELDDEAELKVLGHIELIGD  680
            F+RK+ E  LF  ++LS QEL++E+ ++V+  I+L  +
Sbjct  637  FLRKITEATLFDVPILSWQELGEESLIQVVESIDLSEE  674

69) escV in NC_013716


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  467 bits (1759),  Expect = 1e-132, Method: Compositional matrix adjust.
 Identities = 310/641 (49%), Positives = 503/641 (79%), Gaps = 12/641 (1%)

Query  33   PLPTVVVDIIIAINISTALLLLMLSIYIKNPLELTSFPTILLITTLMRLSLSVSTTRLIL  92
            PLPT +VDI+I+IN+  +++LL+++IY+ +PL+L+ FP++LLITTL RLSL++ST+RL+L
Sbjct  40   PLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVL  99

Query  93   LHHDAGDIIYSfgnfvvggnivvglvifTIITIVQFMVITKGAERVAEVSARFSLDGMPG  152
            L+H+AG+I+ +FG+FVVGGN+ VGLV+FTIITIVQF+VITKG ERVAEVSARFSLDGMPG
Sbjct  100  LQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPG  159

Query  153  KQMSIDGDMRAGVIDPLEAKVLRSRVQKESQFYGSMDGAMKFVKGDAIAGIIIVLVNLFG  212
            KQMSIDGD+RAGVID+ +A+ LR +VQ+ES+F G+MDGAMKFVKGD+IAGII+VLVN++G
Sbjct  160  KQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIG  219

Query  213  GVLIGMWQFDMPFSEALSLFSVLSVGDALVAQIPALIISVTAGVVVTRVPGESEKEENLA  272
            G++I++ Q+DM+ SEA+  +SVLS+GD+L +QIP+L+IS++AG++VTRVPG  EK +NLA
Sbjct  220  GIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSAGIIVTRVPG--EKRQNLA  277

Query  273  GDIIQQVSVNSRPFLISAALMLVMAIIPGFPTLVFLFLAVCLLGIAWKL-QKKRAFGSTN  331
             ++  Q++ ++++++++A +++++A+IPGFP + + F++  LL+++  L ++K++  S+N
Sbjct  278  TELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAFFSA-LLALPIILIRRKKSVVSAN  336

Query  332  SKDSLGGDLSNSQNVSPGAEPLILNLSNNIYSADITQQIEVVRWGFFEESGIPLPKIIVN  391
                 G + ++ +++ PGA PLIL LS  + SAD+ ++I+ +RW +FE++G+PLP + ++
Sbjct  337  -----GVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMRWFLFEDTGVPLPEVNIE  391

Query  392  PIKNNDSVVEFLLYQESIYKDTLTKDTVY-FEAGHGDISFEFVQEKISINSIVYKTNEAN  450
             + +    +  LLYQE+++  ++  ++ Y + ++++ +  +      ++  I   T++  
Sbjct  392  VLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMGQICWLTKDMA  451

Query  451  QQLAHLSGMNVYSETNDKITFLLKKLVLSNAKEFIGVQETRYLMDIMERKYNELVKELQR  510
            ++ A+  G++V++ + ++I+ LLK ++L +  EFIGVQETRYLM+ ME++Y+ELVKELQR
Sbjct  452  HK-AQGFGLDVFAGS-QRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQR  509

Query  511  QLGLSKIVDILQRLVEENISIRDLRTIFETLIFWSTKEKDVVILCEYVRIALRRHILGRY  570
            QL ++KI + LQRLV E +SIRDLR IF TLI W+ +EKDV++L EYVRIALRRHIL R 
Sbjct  510  QLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRL  569

Query  571  SVRGTILNVWLIGSDIENELRESIRQTSSGSYLNISPERSEQIIGFLKNIVNPTSNGVIL  630
            +  G  L +  IG +IEN +RESIRQT+ G+Y  +S+ +  QI+ ++ + ++ +++  I+
Sbjct  570  NPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQSAKLFIV  629

Query  631  TALDIRRYVKKMIEGSFPSVPVLSFQEVGNNIELKVLGTVN  671
            T++D RR+++K+ E+++  VP+LS QE+G++  ++V+ +++
Sbjct  630  TSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670

70) escV in NC_005085


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  461 bits (1738),  Expect = 4e-131, Method: Compositional matrix adjust.
 Identities = 356/685 (52%), Positives = 516/685 (76%), Gaps = 29/685 (4%)

Query  5    KSFLMMAAGRQDivlavmllvavfmmiiPLPTGLVDFMIALNLMIAVILLMMSLYIREPL  64
            +  L + AGRQD+VLA +LL+A+ MM++PLPT +VD++I++NLM++VILL++++Y+ +PL
Sbjct  12   QQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPL  71

Query  65   EFSAFPSVLLITTLYRLALTISTTRLILLQADAGEIVYTFGSFAVGGNLGVGLivfviit  124
            ++S FPS+LLITTLYRL+LTIST+RL+LLQ +AG+IV +FG F VGGNL VGL+VF IIT
Sbjct  72   DLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIIT  131

Query  125  vvqfivitKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDANEARRLRGLVQKESQL  184
            +VQFIVITKG ERVAEVSARFSLD+MPGKQMSIDGD+RAGVIDA++AR LR  VQ+ES++
Sbjct  132  IVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRF  191

Query  185  YGAMDGAMKFVKgdaiagiiiilvnilggTAIGVMMHGMSASAALSTYAILSIGDGLIGQ  244
             GAMDGAMKFVKGD+IAGII++LVNI+GG  I+++  +MS S A+ TY++LSIGDGL GQ
Sbjct  192  LGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQ  251

Query  245  IPALLISITAGTIVTRVPGEQRLNLASDLTDQIGKQPQalllaasvllvfalIPGFPAI-  303
            IP+LLIS++AG IVTRVPGE+R NLA++L+ QI++QPQ+L+L+A VL+++ALIPGFP I 
Sbjct  252  IPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFIT  311

Query  304  --YFIILAAMvsaaawwvkkrkraarsdstgspssesGADAGGETANMSPGATPLMMRLS  361
              +F  L A+             +        +   + +  + E  +M PGA PL++RLS
Sbjct  312  LAFFSALLAL-------------PIILIRRKKSVVSANGVEAPEKDSMVPGACPLILRLS  358

Query  362  PDLIRSSRLPALLDTFRHGKFEQLGIPLPEIQLQKDASLAAGTLQILLYQEPVLTVSLPE  421
            P L +S+ L   +D+ R   FE+ G+PLPE++++  +  ++  L +LLYQEPV+++S+P 
Sbjct  359  PTL-HSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPE-PTEKLTVLLYQEPVFSLSIPA  416

Query  422  R---LLLADIASPKLPQSEQTDKLPFGNLSLQWQSPTQKEALSAIGVQLHQDEDRIVHCL  478
            +   LL++  AS       +++ LP G   + W +    +   ++G+++  + +RI   L
Sbjct  417  QADYLLIGADASV----VGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALL  472

Query  479  SIIIDRYAAEFVGVQETRFLMDAMESKYAELIKEVQRQLPIGRIADVLQRLVAEGVSIRD  538
              ++ R  +EF+GVQETR+LM+AME +Y+EL+KE+QRQLPI +IA+ LQRLV+E VSIRD
Sbjct  473  KCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRD  532

Query  539  LRSVFEALIEWAPREKDPVMLLEYVRMGLRRHIVTRYRA-GQPWISGWMIGDTIEGMVRE  597
            LR +F +LI+WAPREKD +ML EYVR++LRRHI+ R  + G+P ++   IG+ IE +VRE
Sbjct  533  LRLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKP-LPILRIGEGIENLVRE  591

Query  598  AIRQTSAGSYSALDPEHNQAIMSCIREAVGDAEKRNQVLITAIDVRRFLRKVVEREFFNL  657
            +IRQT+ G+Y+AL + H+  I+  I +A+ ++ K    ++T++D RRFLRK+ E  +F++
Sbjct  592  SIRQTAMGTYTALSSRHKTQILQLIEQALKQSAK--LFIVTSVDTRRFLRKITEATLFDV  649

Query  658  HVLSFQEIGEEAELRVVGNIDLIGE  682
             +LS QE+GEE+ ++VV +IDL  E
Sbjct  650  PILSWQELGEESLIQVVESIDLSEE  674

71) escV in NC_011601


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  460 bits (1733),  Expect = 1e-130, Method: Compositional matrix adjust.
 Identities = 312/639 (49%), Positives = 494/639 (78%), Gaps = 8/639 (1%)

Query  33   PLPTVVVDIIIAINISTALLLLMLSIYIKNPLELTSFPTILLITTLMRLSLSVSTTRLIL  92
            PLPT +VDI+I+IN+  +++LL+++IY+ +PL+L+ FP++LLITTL RLSL++ST+RL+L
Sbjct  40   PLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVL  99

Query  93   LHHDAGDIIYSfgnfvvggnivvglvifTIITIVQFMVITKGAERVAEVSARFSLDGMPG  152
            L+H+AG+I+ +FG+FVVGGN+ VGLV+FTIITIVQF+VITKG ERVAEVSARFSLDGMPG
Sbjct  100  LQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPG  159

Query  153  KQMSIDGDMRAGVIDPLEAKVLRSRVQKESQFYGSMDGAMKFVKGDAIAGIIIVLVNLFG  212
            KQMSIDGD+RAGVID+ +A+ LR +VQ+ES+F G+MDGAMKFVKGD+IAGII+VLVN++G
Sbjct  160  KQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIG  219

Query  213  GVLIGMWQFDMPFSEALSLFSVLSVGDALVAQIPALIISVTAGVVVTRVPGESEKEENLA  272
            G++I++ Q+DM+ SEA+  +SVLS+GD+L +QIP+L+IS++AG++VTRVPG  EK +NLA
Sbjct  220  GIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSAGIIVTRVPG--EKRQNLA  277

Query  273  GDIVQQVSVNSRPFLISAALMLVMAIIPGFPTLVFLFLAVCLLGIAWKLQKKRTFGAGNN  332
             ++  Q++ ++++++++A +++++A+IPGFP + + F++  LL+++  L +++    + N
Sbjct  278  TELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAFFSA-LLALPIILIRRKKSVVSAN  336

Query  333  KDAMGADLSNSQNISPGAEPlilnlssniyssDITQQIEVMRWNFFEESGIPLPKIIVNP  392
                G + ++ +++ PGA PLIL LS+ + S+D+ ++I+ MRW +FE++G+PLP + ++ 
Sbjct  337  ----GVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMRWFLFEDTGVPLPEVNIEV  392

Query  393  VKNNDSAIEFLLYQESIYKDTLIDDTVYFEAGHAEISFEFVQEKLSTNSIVYKTNKTNQQ  452
            + +    +  LLYQE+++  ++  ++ Y+  G         Q   +  + +    K   +
Sbjct  393  LPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMGQICWLTKDMAH  452

Query  453  LAHLTGMDVYATTNDKITFLLKKLVLSNAKEFIGVQETRYLMDIMERKYNELVKELQRQL  512
             A+  G+DV+A + ++I+ LLK ++L +  EFIGVQETRYLM+ ME++Y+ELVKELQRQL
Sbjct  453  KAQGFGLDVFAGS-QRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQRQL  511

Query  513  GLSKIVDILQRLVEENVSIRDLRTIFETLIFWSTKEKDVVILCEYVRIALRRHILGRYSV  572
             ++KI + LQRLV E VSIRDLR IF TLI W+ +EKDV++L EYVRIALRRHIL R + 
Sbjct  512  PINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLNP  571

Query  573  SGTLLNVWLIGSDIENELRESIRQTSSGSYLNISPERTEQIIGFLKNIMNPTGNGVILTA  632
             G  L +  IG +IEN +RESIRQT+ G+Y  +S+ +  QI+ ++ + ++ +++  I+T+
Sbjct  572  EGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQSAKLFIVTS  631

Query  633  LDIRRYVKKMIEGSFPSVPVLSFQEVGNNIELKVLGTVN  671
            +D RR+++K+ E+++  VP+LS QE+G++  ++V+ +++
Sbjct  632  VDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670

72) escV in NC_013353


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  460 bits (1734),  Expect = 9e-131, Method: Compositional matrix adjust.
 Identities = 311/639 (49%), Positives = 494/639 (78%), Gaps = 8/639 (1%)

Query  33   PLPTVVVDIIIAINISTALLLLMLSIYIKNPLELTSFPTILLITTLMRLSLSVSTTRLIL  92
            PLPT +VDI+I+IN+  +++LL+++IY+ +PL+L+ FP++LLITTL RLSL++ST+RL+L
Sbjct  40   PLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVL  99

Query  93   LHHDAGDIIYSfgnfvvggnivvglvifTIITIVQFMVITKGAERVAEVSARFSLDGMPG  152
            L+H+AG+I+ +FG+FVVGGN+ VGLV+FTIITIVQF+VITKG ERVAEVSARFSLDGMPG
Sbjct  100  LQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPG  159

Query  153  KQMSIDGDMRAGVIDPLEAKVLRSRVQKESQFYGSMDGAMKFVKGDAIAGIIIVLVNLFG  212
            KQMSIDGD+RAGVID+ +A+ LR +VQ+ES+F G+MDGAMKFVKGD+IAGII+VLVN++G
Sbjct  160  KQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIG  219

Query  213  GVLIGMWQFDMPFSEALSLFSVLSVGDALVAQIPALIISVTAGVVVTRVPGESEKEENLA  272
            G++I++ Q+DM+ SEA+  +SVLS+GD+L +QIP+L+IS++AG++VTRVPG  EK +NLA
Sbjct  220  GIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSAGIIVTRVPG--EKRQNLA  277

Query  273  GDIVQQVSVNSRPFLISAALMIVMAIIPGFPTLVFLFLAVCLLGIAWKLQKKKTFGTGNN  332
             ++  Q++ ++++++++A +++++A+IPGFP + + F++  LL+++  L ++K    + N
Sbjct  278  TELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAFFSA-LLALPIILIRRKKSVVSAN  336

Query  333  KDAMGADLSNSQNISPGAEPlilnlssniyssDITQQIEVMRWNFFEESGIPLPKIIVNP  392
                G + ++ +++ PGA PLIL LS+ + S+D+ ++I+ MRW +FE++G+PLP + ++ 
Sbjct  337  ----GVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMRWFLFEDTGVPLPEVNIEV  392

Query  393  VKNNDSAIEFLLYQESIYKDTLTDDTVYFEAGHAEISFEFVQEKLSANSIVYKTNEANQQ  452
            + +    +  LLYQE+++  ++  ++ Y+  G         Q   ++ + +        +
Sbjct  393  LPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMGQICWLTKDMAH  452

Query  453  LAHVSGMDVYAKTNDKITFLLKKLVLSNAKEFIGVQETRYLMDIMERKYNELVKELQRQL  512
             A+  G+DV+A  +++I+ LLK ++L +  EFIGVQETRYLM+ ME++Y+ELVKELQRQL
Sbjct  453  KAQGFGLDVFA-GSQRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQRQL  511

Query  513  GLSKIVDILQRLVEENISIRDLRTIFETLIFWSTKEKDVVILCEYVRIALRRHILGRYSV  572
             ++KI + LQRLV E +SIRDLR IF TLI W+ +EKDV++L EYVRIALRRHIL R + 
Sbjct  512  PINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLNP  571

Query  573  RGTLLNVWLIGSDIENELRESIRQTSSGSYLNISPERSEQIIGFLKNIVNPTGNGVILTA  632
             G  L +  IG +IEN +RESIRQT+ G+Y  +S+ +  QI+ ++ + ++ +++  I+T+
Sbjct  572  EGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQSAKLFIVTS  631

Query  633  LDIRRYVKKMIEGSFPSVPVLSFQEVGNNIELKVLGTVN  671
            +D RR+++K+ E+++  VP+LS QE+G++  ++V+ +++
Sbjct  632  VDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670

73) escV in NC_013361


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  459 bits (1730),  Expect = 2e-130, Method: Compositional matrix adjust.
 Identities = 310/639 (49%), Positives = 494/639 (78%), Gaps = 8/639 (1%)

Query  33   PLPTVVVDIIIAINISTALLLLMLSIYIKNPLELTSFPTILLITTLMRLSLSVSTTRLIL  92
            PLPT +VDI+I+IN+  +++LL+++IY+ +PL+L+ FP++LLITTL RLSL++ST+RL+L
Sbjct  40   PLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVL  99

Query  93   LHHDAGDIIYSfgnfvvggnivvglvifTIITIVQFMVITKGAERVAEVSARFSLDGMPG  152
            L+H+AG+I+ +FG+FVVGGN+ VGLV+FTIITIVQF+VITKG ERVAEVSARFSLDGMPG
Sbjct  100  LQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPG  159

Query  153  KQMSIDGDMRAGVIDPLEAKVLRSRVQKESQFYGSMDGAMKFVKGDAIAGIIIVLVNLFG  212
            KQMSIDGD+RAGVID+ +A+ LR +VQ+ES+F G+MDGAMKFVKGD+IAGII+VLVN++G
Sbjct  160  KQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIG  219

Query  213  GVLIGMWQFDMPFSEALSLFSVLSVGDALVAQIPALIISVTAGVVVTRVPGESEKEENLA  272
            G++I++ Q+DM+ SEA+  +SVLS+GD+L +QIP+L+IS++AG++VTRVPG  EK +NLA
Sbjct  220  GIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSAGIIVTRVPG--EKRQNLA  277

Query  273  GDIVQQVSVNSRPFLISAALMIVMAIIPGFPTLVFLFLAVCLLGIAWKLQKKRTFGTGNN  332
             ++  Q++ ++++++++A +++++A+IPGFP + + F++  LL+++  L +++    + N
Sbjct  278  TELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAFFSA-LLALPIILIRRKKSVVSAN  336

Query  333  KDAMGADLSNSQNISPGAEPlilnlssniyssDITQQIEVMRWNFFEESGIPLPKIIVNP  392
                G + ++ +++ PGA PLIL LS+ + S+D+ ++I+ MRW +FE++G+PLP + ++ 
Sbjct  337  ----GVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMRWFLFEDTGVPLPEVNIEV  392

Query  393  VKNNDSAIEFLLYQESIYKDTLTDDTVYFEAGHAEISFEFVQEKLSANSIVYKTNEANQQ  452
            + +    +  LLYQE+++  ++  ++ Y+  G         Q   ++ + +        +
Sbjct  393  LPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMGQICWLTKDMAH  452

Query  453  LAHVSGMDVYAKTNDKITFLLKKLVLSNAKEFIGVQETRYLMDIMERKYNELVKELQRQL  512
             A+  G+DV+A  +++I+ LLK ++L +  EFIGVQETRYLM+ ME++Y+ELVKELQRQL
Sbjct  453  KAQGFGLDVFA-GSQRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQRQL  511

Query  513  GLSKIVDILQRLVEENISIRDLRTIFETLIFWSTKEKDVVILCEYVRIALRRHILGRYSV  572
             ++KI + LQRLV E +SIRDLR IF TLI W+ +EKDV++L EYVRIALRRHIL R + 
Sbjct  512  PINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLNP  571

Query  573  RGTLLNVWLIGSDIENELRESIRQTSSGSYLNISPERSEQIIGFLKNIVNPTGNGVILTA  632
             G  L +  IG +IEN +RESIRQT+ G+Y  +S+ +  QI+ ++ + ++ +++  I+T+
Sbjct  572  EGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQSAKLFIVTS  631

Query  633  LDIRRYVKKMIEGSFPSVPVLSFQEVGNNIELKVLGTVN  671
            +D RR+++K+ E+++  VP+LS QE+G++  ++V+ +++
Sbjct  632  VDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670

74) ECH74115_5063 in NC_011353


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  437 bits (1645),  Expect = 9e-124, Method: Compositional matrix adjust.
 Identities = 312/640 (49%), Positives = 493/640 (78%), Gaps = 10/640 (1%)

Query  33   PLPTVVVDIIIAINISTALLLLMLSIYIKNPLELTSFPTILLITTLMRLSLSVSTTRLIL  92
            PLPT +VDI+I+IN+  +++LL+++IY+ +PL+L+ FP++LLITTL RLSL++ST+RL+L
Sbjct  40   PLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVL  99

Query  93   LHHDAGDIIYSfgnfvvggnivvglvifTIITIVQFMVITKGAERVAEVSARFSLDGMPG  152
            L+H+AG+I+ +FG+FVVGGN+ VGLV+FTIITIVQF+VITKG ERVAEVSARFSLDGMPG
Sbjct  100  LQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPG  159

Query  153  KQMSIDGDMRAGVIDPLEAKVLRSRVQKESQFYGSMDGAMKFVKGDAIAGIIIVLVNLFG  212
            KQMSIDGD+RAGVID+ +A+ LR +VQ+ES+F G+MDGAMKFVKGD+IAGII+VLVN++G
Sbjct  160  KQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIG  219

Query  213  GVLIGMWQFDMPfsaalslfsvlsvGDALVAQIPALIISVTAGVVVTRVPGESEKEENLA  272
            G++I++ Q+DM+ S A+  +SVLS+GD+L +QIP+L+IS++AG++VTRVPG  EK +NLA
Sbjct  220  GIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSAGIIVTRVPG--EKRQNLA  277

Query  273  GDIVQQVSVNSRPFLISAALMLVMAIIPGFP-alvflflavcllGIAWKLQKKRTFGTGN  331
             ++  Q++ ++++++++A +++++A+IPGFP   + +F A+  L I   +++K++  ++N
Sbjct  278  TELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAFFSALLALPII-LIRRKKSVVSAN  336

Query  332  NKDAMGADLSNSQNISPGAEPlilnlssniyssDITQQIEVMRWNFFEESGIPLPKIIVN  391
                 G + ++ +++ PGA PLIL LS+ + S+D+ ++I+ MRW +FE++G+PLP + ++
Sbjct  337  -----GVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMRWFLFEDTGVPLPEVNIE  391

Query  392  PVKNNDSAIEFLLYQESIYKDTLIDDTVYFEAGHAEISFEFVQEKLSTNSIVYKTNKTNQ  451
             + +    +  LLYQE+++  ++  ++ Y+  G         Q   +  + +    K   
Sbjct  392  VLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMGQICWLTKDMA  451

Query  452  QLAHLTGMDVYATTNDKITFLLKKLVLSNAKEFIGVQETRYLMDIMERKYNELVKELQRQ  511
            + A+  G+DV+A + ++I+ LLK ++L +  EFIGVQETRYLM+ ME++Y+ELVKELQRQ
Sbjct  452  HKAQGFGLDVFAGS-QRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQRQ  510

Query  512  LGLSKIVDILQRLVEENVSIRDLRTIFETLIFWSTKEKDVVILCEYVRIALRRHILGRYS  571
            L ++KI + LQRLV E VSIRDLR IF TLI W+ +EKDV++L EYVRIALRRHIL R +
Sbjct  511  LPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLN  570

Query  572  VSGTLLNVWLIGSDIENELRESIRQTSSGSYLNISPERTEQIIGFLKNIMNPTGNGVILT  631
              G  L +  IG +IEN +RESIRQT+ G+Y  +S+ +  QI+ ++ + ++ +++  I+T
Sbjct  571  PEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQSAKLFIVT  630

Query  632  ALDIRRYVKKMIEGSFPSVPVLSFQEVGNNIELKVLGTVN  671
            ++D RR+++K+ E+++  VP+LS QE+G++  ++V+ +++
Sbjct  631  SVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670

75) escV in NC_002655


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  437 bits (1645),  Expect = 9e-124, Method: Compositional matrix adjust.
 Identities = 312/640 (49%), Positives = 493/640 (78%), Gaps = 10/640 (1%)

Query  33   PLPTVVVDIIIAINISTALLLLMLSIYIKNPLELTSFPTILLITTLMRLSLSVSTTRLIL  92
            PLPT +VDI+I+IN+  +++LL+++IY+ +PL+L+ FP++LLITTL RLSL++ST+RL+L
Sbjct  40   PLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVL  99

Query  93   LHHDAGDIIYSfgnfvvggnivvglvifTIITIVQFMVITKGAERVAEVSARFSLDGMPG  152
            L+H+AG+I+ +FG+FVVGGN+ VGLV+FTIITIVQF+VITKG ERVAEVSARFSLDGMPG
Sbjct  100  LQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPG  159

Query  153  KQMSIDGDMRAGVIDPLEAKVLRSRVQKESQFYGSMDGAMKFVKGDAIAGIIIVLVNLFG  212
            KQMSIDGD+RAGVID+ +A+ LR +VQ+ES+F G+MDGAMKFVKGD+IAGII+VLVN++G
Sbjct  160  KQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIG  219

Query  213  GVLIGMWQFDMPfsaalslfsvlsvGDALVAQIPALIISVTAGVVVTRVPGESEKEENLA  272
            G++I++ Q+DM+ S A+  +SVLS+GD+L +QIP+L+IS++AG++VTRVPG  EK +NLA
Sbjct  220  GIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSAGIIVTRVPG--EKRQNLA  277

Query  273  GDIVQQVSVNSRPFLISAALMLVMAIIPGFP-alvflflavcllGIAWKLQKKRTFGTGN  331
             ++  Q++ ++++++++A +++++A+IPGFP   + +F A+  L I   +++K++  ++N
Sbjct  278  TELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAFFSALLALPII-LIRRKKSVVSAN  336

Query  332  NKDAMGADLSNSQNISPGAEPlilnlssniyssDITQQIEVMRWNFFEESGIPLPKIIVN  391
                 G + ++ +++ PGA PLIL LS+ + S+D+ ++I+ MRW +FE++G+PLP + ++
Sbjct  337  -----GVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMRWFLFEDTGVPLPEVNIE  391

Query  392  PVKNNDSAIEFLLYQESIYKDTLIDDTVYFEAGHAEISFEFVQEKLSTNSIVYKTNKTNQ  451
             + +    +  LLYQE+++  ++  ++ Y+  G         Q   +  + +    K   
Sbjct  392  VLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMGQICWLTKDMA  451

Query  452  QLAHLTGMDVYATTNDKITFLLKKLVLSNAKEFIGVQETRYLMDIMERKYNELVKELQRQ  511
            + A+  G+DV+A + ++I+ LLK ++L +  EFIGVQETRYLM+ ME++Y+ELVKELQRQ
Sbjct  452  HKAQGFGLDVFAGS-QRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQRQ  510

Query  512  LGLSKIVDILQRLVEENVSIRDLRTIFETLIFWSTKEKDVVILCEYVRIALRRHILGRYS  571
            L ++KI + LQRLV E VSIRDLR IF TLI W+ +EKDV++L EYVRIALRRHIL R +
Sbjct  511  LPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLN  570

Query  572  VSGTLLNVWLIGSDIENELRESIRQTSSGSYLNISPERTEQIIGFLKNIMNPTGNGVILT  631
              G  L +  IG +IEN +RESIRQT+ G+Y  +S+ +  QI+ ++ + ++ +++  I+T
Sbjct  571  PEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQSAKLFIVT  630

Query  632  ALDIRRYVKKMIEGSFPSVPVLSFQEVGNNIELKVLGTVN  671
            ++D RR+++K+ E+++  VP+LS QE+G++  ++V+ +++
Sbjct  631  SVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670

76) ECs4569 in NC_002695


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  437 bits (1645),  Expect = 9e-124, Method: Compositional matrix adjust.
 Identities = 312/640 (49%), Positives = 493/640 (78%), Gaps = 10/640 (1%)

Query  33   PLPTVVVDIIIAINISTALLLLMLSIYIKNPLELTSFPTILLITTLMRLSLSVSTTRLIL  92
            PLPT +VDI+I+IN+  +++LL+++IY+ +PL+L+ FP++LLITTL RLSL++ST+RL+L
Sbjct  40   PLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVL  99

Query  93   LHHDAGDIIYSfgnfvvggnivvglvifTIITIVQFMVITKGAERVAEVSARFSLDGMPG  152
            L+H+AG+I+ +FG+FVVGGN+ VGLV+FTIITIVQF+VITKG ERVAEVSARFSLDGMPG
Sbjct  100  LQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPG  159

Query  153  KQMSIDGDMRAGVIDPLEAKVLRSRVQKESQFYGSMDGAMKFVKGDAIAGIIIVLVNLFG  212
            KQMSIDGD+RAGVID+ +A+ LR +VQ+ES+F G+MDGAMKFVKGD+IAGII+VLVN++G
Sbjct  160  KQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIG  219

Query  213  GVLIGMWQFDMPfsaalslfsvlsvGDALVAQIPALIISVTAGVVVTRVPGESEKEENLA  272
            G++I++ Q+DM+ S A+  +SVLS+GD+L +QIP+L+IS++AG++VTRVPG  EK +NLA
Sbjct  220  GIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSAGIIVTRVPG--EKRQNLA  277

Query  273  GDIVQQVSVNSRPFLISAALMLVMAIIPGFP-alvflflavcllGIAWKLQKKRTFGTGN  331
             ++  Q++ ++++++++A +++++A+IPGFP   + +F A+  L I   +++K++  ++N
Sbjct  278  TELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAFFSALLALPII-LIRRKKSVVSAN  336

Query  332  NKDAMGADLSNSQNISPGAEPlilnlssniyssDITQQIEVMRWNFFEESGIPLPKIIVN  391
                 G + ++ +++ PGA PLIL LS+ + S+D+ ++I+ MRW +FE++G+PLP + ++
Sbjct  337  -----GVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMRWFLFEDTGVPLPEVNIE  391

Query  392  PVKNNDSAIEFLLYQESIYKDTLIDDTVYFEAGHAEISFEFVQEKLSTNSIVYKTNKTNQ  451
             + +    +  LLYQE+++  ++  ++ Y+  G         Q   +  + +    K   
Sbjct  392  VLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMGQICWLTKDMA  451

Query  452  QLAHLTGMDVYATTNDKITFLLKKLVLSNAKEFIGVQETRYLMDIMERKYNELVKELQRQ  511
            + A+  G+DV+A + ++I+ LLK ++L +  EFIGVQETRYLM+ ME++Y+ELVKELQRQ
Sbjct  452  HKAQGFGLDVFAGS-QRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQRQ  510

Query  512  LGLSKIVDILQRLVEENVSIRDLRTIFETLIFWSTKEKDVVILCEYVRIALRRHILGRYS  571
            L ++KI + LQRLV E VSIRDLR IF TLI W+ +EKDV++L EYVRIALRRHIL R +
Sbjct  511  LPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLN  570

Query  572  VSGTLLNVWLIGSDIENELRESIRQTSSGSYLNISPERTEQIIGFLKNIMNPTGNGVILT  631
              G  L +  IG +IEN +RESIRQT+ G+Y  +S+ +  QI+ ++ + ++ +++  I+T
Sbjct  571  PEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQSAKLFIVT  630

Query  632  ALDIRRYVKKMIEGSFPSVPVLSFQEVGNNIELKVLGTVN  671
            ++D RR+++K+ E+++  VP+LS QE+G++  ++V+ +++
Sbjct  631  SVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670

77) escV in NC_013008


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  437 bits (1645),  Expect = 9e-124, Method: Compositional matrix adjust.
 Identities = 312/640 (49%), Positives = 493/640 (78%), Gaps = 10/640 (1%)

Query  33   PLPTVVVDIIIAINISTALLLLMLSIYIKNPLELTSFPTILLITTLMRLSLSVSTTRLIL  92
            PLPT +VDI+I+IN+  +++LL+++IY+ +PL+L+ FP++LLITTL RLSL++ST+RL+L
Sbjct  40   PLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVL  99

Query  93   LHHDAGDIIYSfgnfvvggnivvglvifTIITIVQFMVITKGAERVAEVSARFSLDGMPG  152
            L+H+AG+I+ +FG+FVVGGN+ VGLV+FTIITIVQF+VITKG ERVAEVSARFSLDGMPG
Sbjct  100  LQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPG  159

Query  153  KQMSIDGDMRAGVIDPLEAKVLRSRVQKESQFYGSMDGAMKFVKGDAIAGIIIVLVNLFG  212
            KQMSIDGD+RAGVID+ +A+ LR +VQ+ES+F G+MDGAMKFVKGD+IAGII+VLVN++G
Sbjct  160  KQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIG  219

Query  213  GVLIGMWQFDMPfsaalslfsvlsvGDALVAQIPALIISVTAGVVVTRVPGESEKEENLA  272
            G++I++ Q+DM+ S A+  +SVLS+GD+L +QIP+L+IS++AG++VTRVPG  EK +NLA
Sbjct  220  GIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSAGIIVTRVPG--EKRQNLA  277

Query  273  GDIVQQVSVNSRPFLISAALMLVMAIIPGFP-alvflflavcllGIAWKLQKKRTFGTGN  331
             ++  Q++ ++++++++A +++++A+IPGFP   + +F A+  L I   +++K++  ++N
Sbjct  278  TELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAFFSALLALPII-LIRRKKSVVSAN  336

Query  332  NKDAMGADLSNSQNISPGAEPlilnlssniyssDITQQIEVMRWNFFEESGIPLPKIIVN  391
                 G + ++ +++ PGA PLIL LS+ + S+D+ ++I+ MRW +FE++G+PLP + ++
Sbjct  337  -----GVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMRWFLFEDTGVPLPEVNIE  391

Query  392  PVKNNDSAIEFLLYQESIYKDTLIDDTVYFEAGHAEISFEFVQEKLSTNSIVYKTNKTNQ  451
             + +    +  LLYQE+++  ++  ++ Y+  G         Q   +  + +    K   
Sbjct  392  VLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMGQICWLTKDMA  451

Query  452  QLAHLTGMDVYATTNDKITFLLKKLVLSNAKEFIGVQETRYLMDIMERKYNELVKELQRQ  511
            + A+  G+DV+A + ++I+ LLK ++L +  EFIGVQETRYLM+ ME++Y+ELVKELQRQ
Sbjct  452  HKAQGFGLDVFAGS-QRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQRQ  510

Query  512  LGLSKIVDILQRLVEENVSIRDLRTIFETLIFWSTKEKDVVILCEYVRIALRRHILGRYS  571
            L ++KI + LQRLV E VSIRDLR IF TLI W+ +EKDV++L EYVRIALRRHIL R +
Sbjct  511  LPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLN  570

Query  572  VSGTLLNVWLIGSDIENELRESIRQTSSGSYLNISPERTEQIIGFLKNIMNPTGNGVILT  631
              G  L +  IG +IEN +RESIRQT+ G+Y  +S+ +  QI+ ++ + ++ +++  I+T
Sbjct  571  PEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQSAKLFIVT  630

Query  632  ALDIRRYVKKMIEGSFPSVPVLSFQEVGNNIELKVLGTVN  671
            ++D RR+++K+ E+++  VP+LS QE+G++  ++V+ +++
Sbjct  631  SVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670

78) escV in NC_013941


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  437 bits (1645),  Expect = 9e-124, Method: Compositional matrix adjust.
 Identities = 312/640 (49%), Positives = 493/640 (78%), Gaps = 10/640 (1%)

Query  33   PLPTVVVDIIIAINISTALLLLMLSIYIKNPLELTSFPTILLITTLMRLSLSVSTTRLIL  92
            PLPT +VDI+I+IN+  +++LL+++IY+ +PL+L+ FP++LLITTL RLSL++ST+RL+L
Sbjct  40   PLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVL  99

Query  93   LHHDAGDIIYSfgnfvvggnivvglvifTIITIVQFMVITKGAERVAEVSARFSLDGMPG  152
            L+H+AG+I+ +FG+FVVGGN+ VGLV+FTIITIVQF+VITKG ERVAEVSARFSLDGMPG
Sbjct  100  LQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPG  159

Query  153  KQMSIDGDMRAGVIDPLEAKVLRSRVQKESQFYGSMDGAMKFVKGDAIAGIIIVLVNLFG  212
            KQMSIDGD+RAGVID+ +A+ LR +VQ+ES+F G+MDGAMKFVKGD+IAGII+VLVN++G
Sbjct  160  KQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIG  219

Query  213  GVLIGMWQFDMPfsaalslfsvlsvGDALVAQIPALIISVTAGVVVTRVPGESEKEENLA  272
            G++I++ Q+DM+ S A+  +SVLS+GD+L +QIP+L+IS++AG++VTRVPG  EK +NLA
Sbjct  220  GIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSAGIIVTRVPG--EKRQNLA  277

Query  273  GDIVQQVSVNSRPFLISAALMLVMAIIPGFP-alvflflavcllGIAWKLQKKRTFGTGN  331
             ++  Q++ ++++++++A +++++A+IPGFP   + +F A+  L I   +++K++  ++N
Sbjct  278  TELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAFFSALLALPII-LIRRKKSVVSAN  336

Query  332  NKDAMGADLSNSQNISPGAEPlilnlssniyssDITQQIEVMRWNFFEESGIPLPKIIVN  391
                 G + ++ +++ PGA PLIL LS+ + S+D+ ++I+ MRW +FE++G+PLP + ++
Sbjct  337  -----GVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMRWFLFEDTGVPLPEVNIE  391

Query  392  PVKNNDSAIEFLLYQESIYKDTLIDDTVYFEAGHAEISFEFVQEKLSTNSIVYKTNKTNQ  451
             + +    +  LLYQE+++  ++  ++ Y+  G         Q   +  + +    K   
Sbjct  392  VLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMGQICWLTKDMA  451

Query  452  QLAHLTGMDVYATTNDKITFLLKKLVLSNAKEFIGVQETRYLMDIMERKYNELVKELQRQ  511
            + A+  G+DV+A + ++I+ LLK ++L +  EFIGVQETRYLM+ ME++Y+ELVKELQRQ
Sbjct  452  HKAQGFGLDVFAGS-QRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQRQ  510

Query  512  LGLSKIVDILQRLVEENVSIRDLRTIFETLIFWSTKEKDVVILCEYVRIALRRHILGRYS  571
            L ++KI + LQRLV E VSIRDLR IF TLI W+ +EKDV++L EYVRIALRRHIL R +
Sbjct  511  LPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLN  570

Query  572  VSGTLLNVWLIGSDIENELRESIRQTSSGSYLNISPERTEQIIGFLKNIMNPTGNGVILT  631
              G  L +  IG +IEN +RESIRQT+ G+Y  +S+ +  QI+ ++ + ++ +++  I+T
Sbjct  571  PEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQSAKLFIVT  630

Query  632  ALDIRRYVKKMIEGSFPSVPVLSFQEVGNNIELKVLGTVN  671
            ++D RR+++K+ E+++  VP+LS QE+G++  ++V+ +++
Sbjct  631  SVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670

79) ECO55CA74_21230 in NC_017656


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  437 bits (1645),  Expect = 9e-124, Method: Compositional matrix adjust.
 Identities = 312/640 (49%), Positives = 493/640 (78%), Gaps = 10/640 (1%)

Query  33   PLPTVVVDIIIAINISTALLLLMLSIYIKNPLELTSFPTILLITTLMRLSLSVSTTRLIL  92
            PLPT +VDI+I+IN+  +++LL+++IY+ +PL+L+ FP++LLITTL RLSL++ST+RL+L
Sbjct  40   PLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVL  99

Query  93   LHHDAGDIIYSfgnfvvggnivvglvifTIITIVQFMVITKGAERVAEVSARFSLDGMPG  152
            L+H+AG+I+ +FG+FVVGGN+ VGLV+FTIITIVQF+VITKG ERVAEVSARFSLDGMPG
Sbjct  100  LQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPG  159

Query  153  KQMSIDGDMRAGVIDPLEAKVLRSRVQKESQFYGSMDGAMKFVKGDAIAGIIIVLVNLFG  212
            KQMSIDGD+RAGVID+ +A+ LR +VQ+ES+F G+MDGAMKFVKGD+IAGII+VLVN++G
Sbjct  160  KQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIG  219

Query  213  GVLIGMWQFDMPfsaalslfsvlsvGDALVAQIPALIISVTAGVVVTRVPGESEKEENLA  272
            G++I++ Q+DM+ S A+  +SVLS+GD+L +QIP+L+IS++AG++VTRVPG  EK +NLA
Sbjct  220  GIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSAGIIVTRVPG--EKRQNLA  277

Query  273  GDIVQQVSVNSRPFLISAALMLVMAIIPGFP-alvflflavcllGIAWKLQKKRTFGTGN  331
             ++  Q++ ++++++++A +++++A+IPGFP   + +F A+  L I   +++K++  ++N
Sbjct  278  TELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAFFSALLALPII-LIRRKKSVVSAN  336

Query  332  NKDAMGADLSNSQNISPGAEPlilnlssniyssDITQQIEVMRWNFFEESGIPLPKIIVN  391
                 G + ++ +++ PGA PLIL LS+ + S+D+ ++I+ MRW +FE++G+PLP + ++
Sbjct  337  -----GVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMRWFLFEDTGVPLPEVNIE  391

Query  392  PVKNNDSAIEFLLYQESIYKDTLIDDTVYFEAGHAEISFEFVQEKLSTNSIVYKTNKTNQ  451
             + +    +  LLYQE+++  ++  ++ Y+  G         Q   +  + +    K   
Sbjct  392  VLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMGQICWLTKDMA  451

Query  452  QLAHLTGMDVYATTNDKITFLLKKLVLSNAKEFIGVQETRYLMDIMERKYNELVKELQRQ  511
            + A+  G+DV+A + ++I+ LLK ++L +  EFIGVQETRYLM+ ME++Y+ELVKELQRQ
Sbjct  452  HKAQGFGLDVFAGS-QRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQRQ  510

Query  512  LGLSKIVDILQRLVEENVSIRDLRTIFETLIFWSTKEKDVVILCEYVRIALRRHILGRYS  571
            L ++KI + LQRLV E VSIRDLR IF TLI W+ +EKDV++L EYVRIALRRHIL R +
Sbjct  511  LPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLN  570

Query  572  VSGTLLNVWLIGSDIENELRESIRQTSSGSYLNISPERTEQIIGFLKNIMNPTGNGVILT  631
              G  L +  IG +IEN +RESIRQT+ G+Y  +S+ +  QI+ ++ + ++ +++  I+T
Sbjct  571  PEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQSAKLFIVT  630

Query  632  ALDIRRYVKKMIEGSFPSVPVLSFQEVGNNIELKVLGTVN  671
            ++D RR+++K+ E+++  VP+LS QE+G++  ++V+ +++
Sbjct  631  SVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670

80) CDCO157_4304 in NC_017906


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  437 bits (1645),  Expect = 9e-124, Method: Compositional matrix adjust.
 Identities = 312/640 (49%), Positives = 493/640 (78%), Gaps = 10/640 (1%)

Query  33   PLPTVVVDIIIAINISTALLLLMLSIYIKNPLELTSFPTILLITTLMRLSLSVSTTRLIL  92
            PLPT +VDI+I+IN+  +++LL+++IY+ +PL+L+ FP++LLITTL RLSL++ST+RL+L
Sbjct  40   PLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVL  99

Query  93   LHHDAGDIIYSfgnfvvggnivvglvifTIITIVQFMVITKGAERVAEVSARFSLDGMPG  152
            L+H+AG+I+ +FG+FVVGGN+ VGLV+FTIITIVQF+VITKG ERVAEVSARFSLDGMPG
Sbjct  100  LQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPG  159

Query  153  KQMSIDGDMRAGVIDPLEAKVLRSRVQKESQFYGSMDGAMKFVKGDAIAGIIIVLVNLFG  212
            KQMSIDGD+RAGVID+ +A+ LR +VQ+ES+F G+MDGAMKFVKGD+IAGII+VLVN++G
Sbjct  160  KQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIG  219

Query  213  GVLIGMWQFDMPfsaalslfsvlsvGDALVAQIPALIISVTAGVVVTRVPGESEKEENLA  272
            G++I++ Q+DM+ S A+  +SVLS+GD+L +QIP+L+IS++AG++VTRVPG  EK +NLA
Sbjct  220  GIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSAGIIVTRVPG--EKRQNLA  277

Query  273  GDIVQQVSVNSRPFLISAALMLVMAIIPGFP-alvflflavcllGIAWKLQKKRTFGTGN  331
             ++  Q++ ++++++++A +++++A+IPGFP   + +F A+  L I   +++K++  ++N
Sbjct  278  TELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAFFSALLALPII-LIRRKKSVVSAN  336

Query  332  NKDAMGADLSNSQNISPGAEPlilnlssniyssDITQQIEVMRWNFFEESGIPLPKIIVN  391
                 G + ++ +++ PGA PLIL LS+ + S+D+ ++I+ MRW +FE++G+PLP + ++
Sbjct  337  -----GVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMRWFLFEDTGVPLPEVNIE  391

Query  392  PVKNNDSAIEFLLYQESIYKDTLIDDTVYFEAGHAEISFEFVQEKLSTNSIVYKTNKTNQ  451
             + +    +  LLYQE+++  ++  ++ Y+  G         Q   +  + +    K   
Sbjct  392  VLPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMGQICWLTKDMA  451

Query  452  QLAHLTGMDVYATTNDKITFLLKKLVLSNAKEFIGVQETRYLMDIMERKYNELVKELQRQ  511
            + A+  G+DV+A + ++I+ LLK ++L +  EFIGVQETRYLM+ ME++Y+ELVKELQRQ
Sbjct  452  HKAQGFGLDVFAGS-QRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQRQ  510

Query  512  LGLSKIVDILQRLVEENVSIRDLRTIFETLIFWSTKEKDVVILCEYVRIALRRHILGRYS  571
            L ++KI + LQRLV E VSIRDLR IF TLI W+ +EKDV++L EYVRIALRRHIL R +
Sbjct  511  LPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLN  570

Query  572  VSGTLLNVWLIGSDIENELRESIRQTSSGSYLNISPERTEQIIGFLKNIMNPTGNGVILT  631
              G  L +  IG +IEN +RESIRQT+ G+Y  +S+ +  QI+ ++ + ++ +++  I+T
Sbjct  571  PEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQSAKLFIVT  630

Query  632  ALDIRRYVKKMIEGSFPSVPVLSFQEVGNNIELKVLGTVN  671
            ++D RR+++K+ E+++  VP+LS QE+G++  ++V+ +++
Sbjct  631  SVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESID  670

81) HCH_05101 in NC_007645


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  389 bits (1463),  Expect = 2e-109, Method: Compositional matrix adjust.
 Identities = 289/680 (43%), Positives = 485/680 (72%), Gaps = 32/680 (4%)

Query  12   SQRNDVVLAIFLVGIIFMMILPMPTMLVDVMIAINMGVSVILLMLALYIKSPLDFSVFPS  71
            + R+D+VLA  L+  I MM+LP+PT +VD++I+IN+  SVILL++A+Y+  PLD+SVFPS
Sbjct  19   AGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPS  78

Query  72   MLLITTMFRLALSITTTRLILLQADAGQIVYtfgnfvvggnlvvggvifliltivQFLVI  131
            +LLITT++RL+L+I+T+RL+LLQ +AG+IV +FG+FVVGGNL VG V+F I+TIVQF+VI
Sbjct  79   LLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVI  138

Query  132  TKGSERVAEVSARFSLDSMPGKQMSIDGDMRAGVIDMEEARVRRAKVEKESQLYGSMDGA  191
            TKG ERVAEVSARFSLD+MPGKQMSIDGD+RAGVID ++AR  R  V++ES++ G+MDGA
Sbjct  139  TKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGA  198

Query  192  MKFVKGDAIAGLIITAVNILGGILVGVTQNGLSAGDAAAIYSVLTIGDGLVAQIPALFIS  251
            MKFVKGD+IAG+I+  VNI+GGI++++ Q ++S ++A   YSVL+IGDGL +QIP+L+IS
Sbjct  199  MKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLIS  258

Query  252  ITAGFIVTRVSTDESENLGRDIGGQIGAQPKalfiggalllgfaMIPGFPTMVFLVLAGL  311
            ++AG+IVTRV+ +  +NL+ ++++QI+ QP++L++ + +L+ +A+IPGFP + +  +++L
Sbjct  259  LSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAFFSAL  318

Query  312  ICSIGFIMSRKARHADTDDDDIPAMAAAGQTRTPSKTPEKDDFSPTV-PLLLDVAASCQQ  370
            + ++ +I+ R+ +   + ++                +PEKD   P   PL+L ++++   
Sbjct  319  L-ALPIILIRRKKSVVSANG--------------VEAPEKDSMVPGACPLILRLSPT---  360

Query  371  MLKPSELNAELYRVRRALYLDLGVPFPGIHLRFNESMKDGEYTILMHEVPVAQGRLPADK  430
             L +++L  ++  +R+ L+ D GVP+P +++       +   T+L+ + PV    +PA+ 
Sbjct  361  -LHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTE-KLTVLLYQEPVFSLSIPAQA  418

Query  431  VVVLQDQEQLDILGIPHQQGELAMSANPYWVEKSHAPAMENAGIEYLDAPRLLIYHLSFI  490
              +L + +   ++G ++   + +M ++  W+ K  A   +  G++ + +++ +   L  +
Sbjct  419  DYLLIGADA-SVVGDSQTLPN-GM-GQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCV  475

Query  491  LKRYASEFIGLQECRYLLDQMEGQYGDLVKEVQRVVPIQRIAEILQRLVSEDISIRNLRA  550
            L R  +EFIG+QE RYL++ ME +Y++LVKE+QR +PI++IAE LQRLVSE +SIR+LR 
Sbjct  476  LLRHMGEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRL  535

Query  551  IMEALVEWGQKEKDTVLLTEYVRKSLSRYISYKFCNGQNVLPAYMLDQDLEESIRGGIRQ  610
            I  +L++W+ +EKD ++LTEYVR +L R I  ++    + LP   +++++E+ +R +IRQ
Sbjct  536  IFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQ  595

Query  611  TSSGAYLALDPDTTQNFINELHREVGDLDALQHKPVLLV--SMDIRRYVRKMIERDFFEL  668
            T+ G+Y AL +    ++++ ++      +AL++ + L++  S+D RR++RK+ E  +F++
Sbjct  596  TAMGTYTALSSRHKTQILQLIE------QALKQSAKLFIVTSVDTRRFLRKITEATLFDV  649

Query  669  CVLSYQELTQDITVQPISRI  688
             +LS QEL ++  +Q +  I
Sbjct  650  PILSWQELGEESLIQVVESI  669

82) bcrD in NC_017223


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  361 bits (1355),  Expect = 9e-101, Method: Compositional matrix adjust.
 Identities = 294/694 (43%), Positives = 498/694 (72%), Gaps = 35/694 (5%)

Query  9    RLQRAVALATSRNDivlavlivaivFMMILPLPTTLVDVLIGANMTLSAVLLMVAMYlps  68
            R Q+ +++ ++R+D+VLA +++  + MM+LPLPT +VD+LI  N+ +S +LL++A+YL+ 
Sbjct  10   RAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSD  69

Query  69   plafssfpsvllvTTLFRLGISIATTRLILLQGDAGHIIETfgnfvvggnlivglvvfli  128
            PL +S FPS+LL+TTL+RL+++I+T+RL+LLQ +AG+I+++FG+FVVGGNL VGLVVF I
Sbjct  70   PLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTI  129

Query  129  lTIVQFVVITKGAERVAEVAARFSLDAMPGKQMSIDADLRAGTIDMDEARRRRRTVEKES  188
            +TIVQF+VITKG ERVAEV+ARFSLD+MPGKQMSID+DLRAG ID D+AR  R+ V++ES
Sbjct  130  ITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQES  189

Query  189  QLYGAMDGAMKFVKGDAIAGLIIvavnllggmlvgvlqrglSAGEAVQTYAILTIGDGLI  248
            ++ GAMDGAMKFVKGD+IAG+I+V VN++GG++++++Q ++S +EAV+TY++L+IGDGL 
Sbjct  190  RFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLC  249

Query  249  AQIPALFIAICAGIIVTRVQTGDGPSNVGTDIGAQVLAQPRALVIAGAISAGLGLIPGMP  308
            +QIP+L+I++ AGIIVTRV  G+   N++T++++Q+  QP++L++++ +   L+LIPG P
Sbjct  250  GQIPSLLISLSAGIIVTRV-PGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFP  308

Query  309  --TLVFFALAAAVGTIGFVLLRASQRPPEGAEPALAGMAADGQPRTRAPADGQAEFAPTV  366
              TL FF   +A+ ++ ++L+R  +          + ++A+G      +++ ++  + + 
Sbjct  309  FITLAFF---SALLALPIILIRRKK----------SVVSANGV----EAPEKDSMVPGAC  351

Query  367  PLIIDVAARLQPRFEPATLTDDLLQIRRALYFDLGVPFPGIQLRFTEALAANTYTIVLSE  426
            PLI+    RL P +++A L  D+  +R+ L+ D GVP+P +++      +++  T++L +
Sbjct  352  PLIL----RLSPTLHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPE-PTEKLTVLLYQ  406

Query  427  IPV-AQGMLRDDAVLVRDTEQNLQALRIAYETGAAFLPDTPTIWVAASLTGALRDAGIPY  485
             PV + ++  +   L+ +++ ++ +   +   G +        W++  ++   ++ G+  
Sbjct  407  EPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMG-----QICWLTKDMAHKAQGFGLDV  461

Query  486  LGISQILTWHLAYVLKKYSADFIGIQETRFLLSAMEERFPDLVKECLRVMPVQKIAEILQ  545
            ++ SQ ++  L  VL +  ++FIG+QETR+L++AME  +++LVKE  R +P++KIAE LQ
Sbjct  462  FAGSQRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQ  521

Query  546  RLVSEEVSIRNLRAVLEALVEWGQKEKDTVLLTEYVRIALKRYISHKYTSGHNILPAYLL  605
            RLVSE VSIR+LR ++ +L++W+ +EKD ++LTEYVRIAL+R I ++  +  + LP   +
Sbjct  522  RLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRI  581

Query  606  APKVEETVRAAIRQTAAGSYLALDPDTTRRLVEHIRQCVGDLAAGASRPVLLTSMDIRRY  665
            +  +E+ VR +IRQTA G+Y AL +    ++++ I Q + +    +++  ++TS+D RR+
Sbjct  582  GEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQ----SAKLFIVTSVDTRRF  637

Query  666  TRKMIEADLYALPVLSYQELTPEINVQPLGRVDL  699
             RK+ EA L+ +P+LS QEL  E  +Q +  +DL
Sbjct  638  LRKITEATLFDVPILSWQELGEESLIQVVESIDL  671

83) bcrD in NC_002929


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  361 bits (1355),  Expect = 9e-101, Method: Compositional matrix adjust.
 Identities = 294/694 (43%), Positives = 498/694 (72%), Gaps = 35/694 (5%)

Query  9    RLQRAVALATSRNDivlavlivaivFMMILPLPTTLVDVLIGANMTLSAVLLMVAMYlps  68
            R Q+ +++ ++R+D+VLA +++  + MM+LPLPT +VD+LI  N+ +S +LL++A+YL+ 
Sbjct  10   RAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSD  69

Query  69   plafssfpsvllvTTLFRLGISIATTRLILLQGDAGHIIETfgnfvvggnlivglvvfli  128
            PL +S FPS+LL+TTL+RL+++I+T+RL+LLQ +AG+I+++FG+FVVGGNL VGLVVF I
Sbjct  70   PLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTI  129

Query  129  lTIVQFVVITKGAERVAEVAARFSLDAMPGKQMSIDADLRAGTIDMDEARRRRRTVEKES  188
            +TIVQF+VITKG ERVAEV+ARFSLD+MPGKQMSID+DLRAG ID D+AR  R+ V++ES
Sbjct  130  ITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQES  189

Query  189  QLYGAMDGAMKFVKGDAIAGLIIvavnllggmlvgvlqrglSAGEAVQTYAILTIGDGLI  248
            ++ GAMDGAMKFVKGD+IAG+I+V VN++GG++++++Q ++S +EAV+TY++L+IGDGL 
Sbjct  190  RFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLC  249

Query  249  AQIPALFIAICAGIIVTRVQTGDGPSNVGTDIGAQVLAQPRALVIAGAISAGLGLIPGMP  308
            +QIP+L+I++ AGIIVTRV  G+   N++T++++Q+  QP++L++++ +   L+LIPG P
Sbjct  250  GQIPSLLISLSAGIIVTRV-PGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFP  308

Query  309  --TLVFFALAAAVGTIGFVLLRASQRPPEGAEPALAGMAADGQPRTRAPADGQAEFAPTV  366
              TL FF   +A+ ++ ++L+R  +          + ++A+G      +++ ++  + + 
Sbjct  309  FITLAFF---SALLALPIILIRRKK----------SVVSANGV----EAPEKDSMVPGAC  351

Query  367  PLIIDVAARLQPRFEPATLTDDLLQIRRALYFDLGVPFPGIQLRFTEALAANTYTIVLSE  426
            PLI+    RL P +++A L  D+  +R+ L+ D GVP+P +++      +++  T++L +
Sbjct  352  PLIL----RLSPTLHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPE-PTEKLTVLLYQ  406

Query  427  IPV-AQGMLRDDAVLVRDTEQNLQALRIAYETGAAFLPDTPTIWVAASLTGALRDAGIPY  485
             PV + ++  +   L+ +++ ++ +   +   G +        W++  ++   ++ G+  
Sbjct  407  EPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMG-----QICWLTKDMAHKAQGFGLDV  461

Query  486  LGISQILTWHLAYVLKKYSADFIGIQETRFLLSAMEERFPDLVKECLRVMPVQKIAEILQ  545
            ++ SQ ++  L  VL +  ++FIG+QETR+L++AME  +++LVKE  R +P++KIAE LQ
Sbjct  462  FAGSQRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQ  521

Query  546  RLVSEEVSIRNLRAVLEALVEWGQKEKDTVLLTEYVRIALKRYISHKYTSGHNILPAYLL  605
            RLVSE VSIR+LR ++ +L++W+ +EKD ++LTEYVRIAL+R I ++  +  + LP   +
Sbjct  522  RLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRI  581

Query  606  APKVEETVRAAIRQTAAGSYLALDPDTTRRLVEHIRQCVGDLAAGASRPVLLTSMDIRRY  665
            +  +E+ VR +IRQTA G+Y AL +    ++++ I Q + +    +++  ++TS+D RR+
Sbjct  582  GEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQ----SAKLFIVTSVDTRRF  637

Query  666  TRKMIEADLYALPVLSYQELTPEINVQPLGRVDL  699
             RK+ EA L+ +P+LS QEL  E  +Q +  +DL
Sbjct  638  LRKITEATLFDVPILSWQELGEESLIQVVESIDL  671

84) bcrD in NC_018829


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  360 bits (1353),  Expect = 1e-100, Method: Compositional matrix adjust.
 Identities = 293/695 (43%), Positives = 498/695 (72%), Gaps = 35/695 (5%)

Query  8    LRLQRAVALATSRNDivlavlivaivFMMILPLPTTLVDVLIGANMTLSAVLLMVAMYlp  67
            +R Q+ +++ ++R+D+VLA +++  + MM+LPLPT +VD+LI  N+ +S +LL++A+YL+
Sbjct  9    VRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLS  68

Query  68   splafssfpsvllvTTLFRLGISIATTRLILLQGDAGHIIETfgnfvvggnlivglvvfl  127
             PL +S FPS+LL+TTL+RL+++I+T+RL+LLQ +AG+I+++FG+FVVGGNL VGLVVF 
Sbjct  69   DPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFT  128

Query  128  ilTIVQFVVITKGAERVAEVAARFSLDAMPGKQMSIDADLRAGTIDMDEARRRRRTVEKE  187
            I+TIVQF+VITKG ERVAEV+ARFSLD+MPGKQMSID+DLRAG ID D+AR  R+ V++E
Sbjct  129  IITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQE  188

Query  188  SQLYGAMDGAMKFVKGDAIAGLIIvavnllggmlvgvlqrglSAGEAVQTYAILTIGDGL  247
            S++ GAMDGAMKFVKGD+IAG+I+V VN++GG++++++Q ++S +EAV+TY++L+IGDGL
Sbjct  189  SRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGL  248

Query  248  IAQIPALFIAICAGIIVTRVQTGDSPSNVGTDIGAQVLAQPRALVIAGAISAGLGLIPGM  307
             +QIP+L+I++ AGIIVTRV  G+   N++T++++Q+  QP++L++++ +   L+LIPG 
Sbjct  249  CGQIPSLLISLSAGIIVTRV-PGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGF  307

Query  308  P--TLVFFALAAVVGTIGFVLLRASQRPPEGAEPALAGMAADGQPRTRAPADGQAEFAPT  365
            P  TL FF   + + ++ ++L+R  +          + ++A+G      +++ ++  + +
Sbjct  308  PFITLAFF---SALLALPIILIRRKK----------SVVSANGV----EAPEKDSMVPGA  350

Query  366  VPLIIDVAARLQPRFEPATLTDDLLQIRRALYFDLGVPFPGIQLRFTEALAANTYTIVLS  425
             PLI+    RL P +++A L  D+  +R+ L+ D GVP+P +++      +++  T++L 
Sbjct  351  CPLIL----RLSPTLHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPE-PTEKLTVLLY  405

Query  426  EIPV-AQGMLRDDAVLVRDTEQNLQALRIAYETGAAFLPDTPTIWVAASLTGALRDAGIP  484
            + PV + ++  +   L+ +++ ++ +   +   G +        W++  ++   ++ G+ 
Sbjct  406  QEPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMG-----QICWLTKDMAHKAQGFGLD  460

Query  485  YLGISQILTWHLAYVLKKYSADFIGIQETRFLLSAMEERFPDLVKECLRVMPVQKIAEIL  544
             ++ SQ ++  L  VL +  ++FIG+QETR+L++AME  +++LVKE  R +P++KIAE L
Sbjct  461  VFAGSQRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETL  520

Query  545  QRLVSEEVSIRNLRAVLEALVEWGQKEKDTVLLTEYVRIALKRYISHKYTSGHNILPAYL  604
            QRLVSE VSIR+LR ++ +L++W+ +EKD ++LTEYVRIAL+R I ++  +  + LP   
Sbjct  521  QRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILR  580

Query  605  LAPKVEETVRAAIRQTAAGSYLALDPDTTRRLVEHIRQCVGDLAAGASRPVLLTSMDIRR  664
            ++  +E+ VR +IRQTA G+Y AL +    ++++ I Q + +    +++  ++TS+D RR
Sbjct  581  IGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQ----SAKLFIVTSVDTRR  636

Query  665  YTRKMIEADLYALPVLSYQELTPEINVQPLGRVDL  699
            + RK+ EA L+ +P+LS QEL  E  +Q +  +DL
Sbjct  637  FLRKITEATLFDVPILSWQELGEESLIQVVESIDL  671

85) bcrD in NC_018518


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  360 bits (1353),  Expect = 1e-100, Method: Compositional matrix adjust.
 Identities = 294/694 (43%), Positives = 497/694 (72%), Gaps = 35/694 (5%)

Query  9    RLQRAVALATSRNDivlavlivaivFMMILPLPTTLVDVLIGANMTLSAVLLMVAMYlps  68
            R Q+ +++ ++R+D+VLA +++  + MM+LPLPT +VD+LI  N+ +S +LL++A+YL+ 
Sbjct  10   RAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSD  69

Query  69   plafssfpsvllvTTLFRLGISIATTRLILLQGDAGHIIETfgnfvvggnlivglvvfli  128
            PL +S FPS+LL+TTL+RL+++I+T+RL+LLQ +AG+I+++FG+FVVGGNL VGLVVF I
Sbjct  70   PLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTI  129

Query  129  lTIVQFVVITKGAERVAEVAARFSLDAMPGKQMSIDADLRAGTIDMDEARRRRRTVEKES  188
            +TIVQF+VITKG ERVAEV+ARFSLD+MPGKQMSID+DLRAG ID D+AR  R+ V++ES
Sbjct  130  ITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQES  189

Query  189  QLYGAMDGAMKFVKGDAIAGLIIvavnllggmlvgvlqrglSAGEAVQTYAILTIGDGLI  248
            ++ GAMDGAMKFVKGD+IAG+I+V VN++GG++++++Q ++S +EAV+TY++L+IGDGL 
Sbjct  190  RFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLC  249

Query  249  AQIPALFIAICAGIIVTRVQTGDGPSNVGTDIGAQVLAQPRALVIAGAISAGLGLIPGMP  308
            +QIP+L+I++ AGIIVTRV  G+   N++T++++Q+  QP++L++++ +   L+LIPG P
Sbjct  250  GQIPSLLISLSAGIIVTRV-PGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFP  308

Query  309  --TLVFFALAAAVGTIGFVLLRASQRPPEGAEPALAGMAADGQPRTRAPADGQAEFAPTV  366
              TL FF   +A+ ++ ++L+R  +          + ++A+G      +++ ++  + + 
Sbjct  309  FITLAFF---SALLALPIILIRRKK----------SVVSANGV----EAPEKDSMVPGAC  351

Query  367  PLIIDVAARLQPRFEPATLTDDLLQIRRALYFDLGVPFPGIQLRFTEALAANTYTIVLSE  426
            PLI+    RL P +++A L  D+  +R+ L+ D GVP+P +++      +++  T++L +
Sbjct  352  PLIL----RLSPTLHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPE-PTEKLTVLLYQ  406

Query  427  IPV-AQGMLRDDAVLVRDTEQNLQALRIAYETGAAFLPDTPTIWVAASLTGALRDAGIPY  485
             PV + ++  +   L+ +++ ++ +   +   G +        W++  ++   ++ G+  
Sbjct  407  EPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMG-----QICWLTKDMAHKAQGFGLDV  461

Query  486  LGISQILTWHLAYVLKKYSTDFIGIQETRFLLSAMEERFPDLVKECLRVMPVQKIAEILQ  545
            ++ SQ ++  L  VL +   +FIG+QETR+L++AME  +++LVKE  R +P++KIAE LQ
Sbjct  462  FAGSQRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQ  521

Query  546  RLVSEEVSIRNLRAVLEALVEWGQKEKDTVLLTEYVRIALKRYISHKYTSGHNILPAYLL  605
            RLVSE VSIR+LR ++ +L++W+ +EKD ++LTEYVRIAL+R I ++  +  + LP   +
Sbjct  522  RLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRI  581

Query  606  APKVEETVRAAIRQTAAGSYLALDPDTTRRLVEHIRQCVGDLAAGASRPVLLTSMDIRRY  665
            +  +E+ VR +IRQTA G+Y AL +    ++++ I Q + +    +++  ++TS+D RR+
Sbjct  582  GEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQ----SAKLFIVTSVDTRRF  637

Query  666  TRKMIEADLYALPVLSYQELTPEINVQPLGRVDL  699
             RK+ EA L+ +P+LS QEL  E  +Q +  +DL
Sbjct  638  LRKITEATLFDVPILSWQELGEESLIQVVESIDL  671

86) HCH_03273 in NC_007645


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  360 bits (1353),  Expect = 1e-100, Method: Compositional matrix adjust.
 Identities = 299/698 (43%), Positives = 493/698 (71%), Gaps = 40/698 (5%)

Query  4    ARLNQTLQLIAGRKDILFAAMLVAIIFMMILPLPTVLVDILIgvnmglavvllmvgvYLR  63
             R +Q L + AGR+D+++A++L+  I MM+LPLPT +VDILI +N+ ++V+LL++++YL 
Sbjct  9    VRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLS  68

Query  64   SPLEFVAFPSVllittlfrlslsitttrlillQADAGSIIEAfggfvvggnlvvglvifl  123
             PL++  FPS+LLITTL+RLSL+I+T+RL+LLQ +AG+I++AFG FVVGGNL VGLV+F 
Sbjct  69   DPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFT  128

Query  124  iitvvQFLVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVDEARHRRSQVQKE  183
            IIT+VQF+VITKG ERVAEVSARFSLD+MPGKQMSIDGD+RAGVID D+AR  R +VQ+E
Sbjct  129  IITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQE  188

Query  184  SQLYGSMDGAMKFVKGDAIAGLIIIAVNILGGIAIGTLQNGMTSGEALELYALLTIGDGL  243
            S++ G+MDGAMKFVKGD+IAG+I++ VNI+GGI I+ +Q +M+ +EA++ Y++L+IGDGL
Sbjct  189  SRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGL  248

Query  244  VAQIPALFIAITAGVIVTRVTTDESENLGADIANQIVSKPQAILIGGGLLFTFALIPGFP  303
             +QIP+L+I+++AG+IVTRV  +  +NL++++++QI  +PQ++++ + +L  +ALIPGFP
Sbjct  249  CGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFP  308

Query  304  TLTFIVLAL--TLTGIGVFTLRQSKNASADKHPPLSAMAAAGQPPSKAQLNEAEEFTFTV  361
               FI LA+  +L ++ ++ +R+ K+  +         A + ++P K  +  +     + 
Sbjct  309  ---FITLAFFSALLALPIILIRRKKSVVS---------ANGVEAPEKDSMVPG-----AC  351

Query  362  PLLVDIAADAEDALDPNALNEEILKIRRSLYLDLGVPFPGIHLRINHGLSDGRYKIHLQE  421
            PL++ +++    +L++  L  +I  +R+ L+ D GVP+P +++ +    +  +  + L +
Sbjct  352  PLILRLSP----TLHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPE-PTEKLTVLLYQ  406

Query  422  TPIAEGFIKPRQLLVRDQKEQLDLLAIEHN--SEVELLPD--APAYWVEQRHQTSLDKME  477
             P+   F     L +  Q + L L++ + +  ++ + LP+  +   W+ +      +   
Sbjct  407  EPV---F----SLSIPAQADYL-LIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFG  458

Query  478  VAYLTPPRVLSYHLSIILKKYAQEFIGIQETRFLLEKMEGRYGELVKEVQRLLPIQKITE  537
            +  ++ ++ +S  L  +L +   EFIG+QETR+L++ ME  Y+ELVKE+QR LPI+KI+E
Sbjct  459  LDVFAGSQRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAE  518

Query  538  ILQRLVSEDISIRNLRSILEALAEWAQKEKETVLLTEYVRNSLRRYISYKYSNGQNILPA  597
             LQRLVSE +SIR+LR I+ +L +WA +EK+ ++LTEYVR +LRR I  + +   + LP 
Sbjct  519  TLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPI  578

Query  598  YMLDQSLEDAIRGGVRQTSSGAYLALEPDTTRKIVEITRRTVGDLNPGAQKVVVITSMDV  657
              +++++E+ +R ++RQT+ G+Y AL +    +I+++  +++ +    + K+ ++TS+D 
Sbjct  579  LRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQ----SAKLFIVTSVDT  634

Query  658  RRYLRKLLERDMRQLPILSYQDLTPEITIQPLGRIALS  695
            RR+LRK+ E  + ++PILS Q+L  E  IQ +  I LS
Sbjct  635  RRFLRKITEATLFDVPILSWQELGEESLIQVVESIDLS  672

87) bcrD in NC_018828


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  358 bits (1346),  Expect = 4e-100, Method: Compositional matrix adjust.
 Identities = 293/695 (43%), Positives = 493/695 (71%), Gaps = 35/695 (5%)

Query  8    LRLQRAVALATSRNDivlavlivaivFMMILPLPTTLVDVLIGANMTLSAVLLMVAMYlp  67
            +R Q+ +++ ++R+D+VLA +++  + MM+LPLPT +VD+LI  N+ +S +LL++A+YL+
Sbjct  9    VRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLS  68

Query  68   splafssfpsvllvTTLFRLGISIATTRLILLQGDAGHIIETfgnfvvggnlivglvvfl  127
             PL +S FPS+LL+TTL+RL+++I+T+RL+LLQ +AG+I+++FG+FVVGGNL VGLVVF 
Sbjct  69   DPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFT  128

Query  128  ilTIVQFVVITKGAERVAEVAARFSLDAMPGKQMSIDADLRAGTIDMDEARRRRRTVEKE  187
            I+TIVQF+VITKG ERVAEV+ARFSLD+MPGKQMSID+DLRAG ID D+AR  R+ V++E
Sbjct  129  IITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQE  188

Query  188  SQLYGAMDGAMKFVKGDAIAGLIIvavnllggmlvgvlqrglSAGEAVQTYAILTIGDGL  247
            S++ GAMDGAMKFVKGD+IAG+I+V VN++GG++++++Q ++S +EAV+TY++L+IGDGL
Sbjct  189  SRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGL  248

Query  248  IAQIPALFIAICAGIIVTRVQTGDGPSNVGTDIGAQVLAQPRALVIAGAISAGLGLIPGM  307
             +QIP+L+I++ AGIIVTRV  G+   N++T++++Q+  QP++L++++ +   L+LIPG 
Sbjct  249  CGQIPSLLISLSAGIIVTRV-PGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGF  307

Query  308  P--TLVFFALAAVVGTIGFVLLRASQRPPEGAGPALAGMAADGQPRTRAPADGQAEFAPT  365
            P  TL FF   + + ++ ++L+R  +    + G                +++ ++  + +
Sbjct  308  PFITLAFF---SALLALPIILIRRKKSVVSANGV--------------EAPEKDSMVPGA  350

Query  366  VPLIIDVAARLQPRFEPATLTDDLLQIRRALYFDLGVPFPGIQLRFTEALAANTYTIVLS  425
             PLI+    RL P +++A L  D+  +R+ L+ D GVP+P +++      +++  T++L 
Sbjct  351  CPLIL----RLSPTLHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPE-PTEKLTVLLY  405

Query  426  EIPV-AQGMLRDDAVLVRDTEQNLQALRIAYETGAAFLPDTPTIWVTASLTGALRDAGIP  484
            + PV + ++  +   L+ +++ ++ +   +   G +        W+T  ++   ++ G+ 
Sbjct  406  QEPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMG-----QICWLTKDMAHKAQGFGLD  460

Query  485  YLGISQILTWHLAYVLKKYSADFIGIQETRFLLSAMEERFPDLVKECLRVMPVQKIAEIL  544
             ++ SQ ++  L  VL +  ++FIG+QETR+L++AME  +++LVKE  R +P++KIAE L
Sbjct  461  VFAGSQRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETL  520

Query  545  QRLVSEEVSIRNLRAVLEALVEWGQKEKDTVLLTEYVRIALKRYISYKYTSGHNILPAYL  604
            QRLVSE VSIR+LR ++ +L++W+ +EKD ++LTEYVRIAL+R I  +  +  + LP   
Sbjct  521  QRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILR  580

Query  605  LAPKVEETVRAAIRQTAAGSYLALDPDTTRRLVEHIRQCVGDLAAGASRPVLLTSMDIRR  664
            ++  +E+ VR +IRQTA G+Y AL +    ++++ I Q + +    +++  ++TS+D RR
Sbjct  581  IGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQ----SAKLFIVTSVDTRR  636

Query  665  YTRKMIEADLYALPVLSYQELTPEINVQPLGRVDL  699
            + RK+ EA L+ +P+LS QEL  E  +Q +  +DL
Sbjct  637  FLRKITEATLFDVPILSWQELGEESLIQVVESIDL  671

88) bcrD in NC_002927


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  358 bits (1345),  Expect = 6e-100, Method: Compositional matrix adjust.
 Identities = 293/695 (43%), Positives = 498/695 (72%), Gaps = 35/695 (5%)

Query  8    LRLQRAVALATSRNDivlavlivaivFMMILPLPTTLVDVLIGANMTLSAVLLMVAMYlp  67
            +R Q+ +++ ++R+D+VLA +++  + MM+LPLPT +VD+LI  N+ +S +LL++A+YL+
Sbjct  9    VRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLS  68

Query  68   splafssfpsvllvTTLFRLGISIATTRLILLQGDAGHIIETfgnfvvggnlivglvvfl  127
             PL +S FPS+LL+TTL+RL+++I+T+RL+LLQ +AG+I+++FG+FVVGGNL VGLVVF 
Sbjct  69   DPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFT  128

Query  128  ilTIVQFVVITKGAERVAEVAARFSLDAMPGKQMSIDADLRAGTIDMDEARRRRRTVEKE  187
            I+TIVQF+VITKG ERVAEV+ARFSLD+MPGKQMSID+DLRAG ID D+AR  R+ V++E
Sbjct  129  IITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQE  188

Query  188  SQLYGAMDGAMKFVKGDAIAGLIIvavnllggmlvgvlqrglSAGEAVQTYAILTIGDGL  247
            S++ GAMDGAMKFVKGD+IAG+I+V VN++GG++++++Q ++S +EAV+TY++L+IGDGL
Sbjct  189  SRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGL  248

Query  248  IAQIPALFIAICAGIIVTRVQTGDGPSNVGTDIGAQVLAQPRALVIAGAISAGLGLIPGM  307
             +QIP+L+I++ AGIIVTRV  G+   N++T++++Q+  QP++L++++ +   L+LIPG 
Sbjct  249  CGQIPSLLISLSAGIIVTRV-PGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGF  307

Query  308  P--TLVFFALAAVVGTIGFVLLRASQRPPEGAGPALAGMAADGLPRTRAPADGQAEFAPT  365
            P  TL FF   + + ++ ++L+R  +          + ++A+G+     +++ ++  + +
Sbjct  308  PFITLAFF---SALLALPIILIRRKK----------SVVSANGV----EAPEKDSMVPGA  350

Query  366  VPLIIDVAARLQPRFEPATLTDDLLQIRRALYFDLGVPFPGIQLRFTEALAANTYTIVLS  425
             PLI+    RL P +++A L  D+  +R+ L+ D GVP+P +++      +++  T++L 
Sbjct  351  CPLIL----RLSPTLHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPE-PTEKLTVLLY  405

Query  426  EIPV-AQGMLRDDAVLVRDTEQNLQALRIAYETGAAFLPDTPTIWVAASLTGALRDAGIP  484
            + PV + ++  +   L+ +++ ++ +   +   G +        W++  ++   ++ G+ 
Sbjct  406  QEPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMG-----QICWLTKDMAHKAQGFGLD  460

Query  485  YLGISQILTWHLAYVLKKYSADFIGIQETRFLLSAMEERFPDLVKECLRVMPVQKIAEIL  544
             ++ SQ ++  L  VL +  ++FIG+QETR+L++AME  +++LVKE  R +P++KIAE L
Sbjct  461  VFAGSQRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETL  520

Query  545  QRLVSEEVSIRNLRAVLEALVEWGQKEKDTVLLTEYVRIALKRYISYKYTSGHNILPAYL  604
            QRLVSE VSIR+LR ++ +L++W+ +EKD ++LTEYVRIAL+R I  +  +  + LP   
Sbjct  521  QRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILR  580

Query  605  LAPKVEETVRAAIRQTAAGSYLALDPDTTRRLVEHIRQCVGDLAAGASRPVLLTSMDIRR  664
            ++  +E+ VR +IRQTA G+Y AL +    ++++ I Q + +    +++  ++TS+D RR
Sbjct  581  IGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQ----SAKLFIVTSVDTRR  636

Query  665  YTRKMIEADLYALPVLSYQELTPEINVQPLGRVDL  699
            + RK+ EA L+ +P+LS QEL  E  +Q +  +DL
Sbjct  637  FLRKITEATLFDVPILSWQELGEESLIQVVESIDL  671

89) bcrD in NC_019382


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  358 bits (1344),  Expect = 7e-100, Method: Compositional matrix adjust.
 Identities = 292/695 (43%), Positives = 493/695 (71%), Gaps = 35/695 (5%)

Query  8    LRLQRAVALATSRNDivlavlivaivFMMILPLPTTLVDVLIGANMTLSAVLLMVAMYlp  67
            +R Q+ +++ ++R+D+VLA +++  + MM+LPLPT +VD+LI  N+ +S +LL++A+YL+
Sbjct  9    VRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLS  68

Query  68   splafssfpsvllvTTLFRLGISIATTRLILLQGDAGHIIETfgnfvvggnlivglvvfl  127
             PL +S FPS+LL+TTL+RL+++I+T+RL+LLQ +AG+I+++FG+FVVGGNL VGLVVF 
Sbjct  69   DPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFT  128

Query  128  ilTIVQFVVITKGAERVAEVAARFSLDAMPGKQMSIDADLRAGTIDMDEARRRRRTVEKE  187
            I+TIVQF+VITKG ERVAEV+ARFSLD+MPGKQMSID+DLRAG ID D+AR  R+ V++E
Sbjct  129  IITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQE  188

Query  188  SQLYGAMDGAMKFVKGDAIAGLIIvavnllggmlvgvlqrglSAGEAVQTYAILTIGDGL  247
            S++ GAMDGAMKFVKGD+IAG+I+V VN++GG++++++Q ++S +EAV+TY++L+IGDGL
Sbjct  189  SRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGL  248

Query  248  IAQIPALFIAICAGIIVTRVQTGDGPSNVGTDIGAQVLAQPRALVIAGAISAGLGLIPGM  307
             +QIP+L+I++ AGIIVTRV  G+   N++T++++Q+  QP++L++++ +   L+LIPG 
Sbjct  249  CGQIPSLLISLSAGIIVTRV-PGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGF  307

Query  308  P--TLVFFALAAVVGTIGFVLLRASQRPPEGAGPALAGMAADGQPRTRAPADGQAEFAPT  365
            P  TL FF   + + ++ ++L+R  +    + G                +++ ++  + +
Sbjct  308  PFITLAFF---SALLALPIILIRRKKSVVSANGV--------------EAPEKDSMVPGA  350

Query  366  VPLIIDVAARLQPRFEPATLTDDLLQIRRALYFDLGVPFPGIQLRFTEALAANTYTIVLS  425
             PLI+    RL P +++A L  D+  +R+ L+ D GVP+P +++      +++  T++L 
Sbjct  351  CPLIL----RLSPTLHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPE-PTEKLTVLLY  405

Query  426  EIPV-AQGMLRDDAVLVRDTEQNLQALRIAYETGAAFLPDTPTIWVAASLTGALRDAGIP  484
            + PV + ++  +   L+ +++ ++ +   +   G +        W++  ++   ++ G+ 
Sbjct  406  QEPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMG-----QICWLTKDMAHKAQGFGLD  460

Query  485  YLGISQILTWHLAYVLKKYSADFIGIQETRFLLSAMEERFPDLVKECLRVMPVQKIAEIL  544
             ++ SQ ++  L  VL +  ++FIG+QETR+L++AME  +++LVKE  R +P++KIAE L
Sbjct  461  VFAGSQRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETL  520

Query  545  QRLVSEEVSIRNLRAVLEALVEWGQKEKDTVLLTEYVRIALKRYISYKYTSGHNILPAYL  604
            QRLVSE VSIR+LR ++ +L++W+ +EKD ++LTEYVRIAL+R I  +  +  + LP   
Sbjct  521  QRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILR  580

Query  605  LAPKVEETVRAAIRQTAAGSYLALDPDTTRRLVEHIRQCVGDLAAGASRPVLLTSMDIRR  664
            ++  +E+ VR +IRQTA G+Y AL +    ++++ I Q + +    +++  ++TS+D RR
Sbjct  581  IGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQ----SAKLFIVTSVDTRR  636

Query  665  YTRKMIEADLYALPVLSYQELTPEINVQPLGRVDL  699
            + RK+ EA L+ +P+LS QEL  E  +Q +  +DL
Sbjct  637  FLRKITEATLFDVPILSWQELGEESLIQVVESIDL  671

90) Dvul_3008 in NC_008741


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  357 bits (1340),  Expect = 1e-99, Method: Compositional matrix adjust.
 Identities = 269/666 (41%), Positives = 450/666 (68%), Gaps = 48/666 (7%)

Query  41   LVDTLIGANMALSFVMLMMSMYVKSILDFSVFPTMLLFTTLFRVGLNITTTRLILLQADA  100
            +VD LI  N+ +S ++L++++Y+   LD+SVFP++LL+TTL+R++L I+T+RL+LLQ +A
Sbjct  45   MVDILITINLMFSVILLLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNA  104

Query  101  GEIIFVFGEYalggnfvvgavvfviltivQFLVIAKGAERVAEVGARFTLDAMPGKQMSI  160
            G+I+  FG + +GGN+ VG VVF I+TIVQF+VI+KG ERVAEV+ARF+LD+MPGKQMSI
Sbjct  105  GNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSI  164

Query  161  DADMRAGVIDMEEAQRRRNTVSQESQMYGAMDGAMKFVKGDSIAGMIVALVNIVGGTVIG  220
            D+D+RAGVID ++A+  R+ V QES+  GAMDGAMKFVKGD+IAG+IV LVNI+GG +I+
Sbjct  165  DGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIA  224

Query  221  ITQHGMAAGEALHTYGILTIGDGLVSQIPSLLVSISAGILITR-SGDSGGNVGAQIGGQI  279
            I Q +M+ +EA+HTY++L+IGDGL +QIPSLL+S+SAGI++TR +G+   N+++++++QI
Sbjct  225  IVQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQI  284

Query  280  FGQPKALLMAGGLVFLFALVPGFPKPQlmglalalggfgYVLRRMAELPAETDPRAELSR  339
              QP++L++++ ++ L+AL+PGFP   L  ++  L+    ++RR   + +  +  A    
Sbjct  285  ARQPQSLILTAVVLMLLALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKD  344

Query  340  SLAPAVKPRPARGGAQQGDDFAPTVPIILDLSPALGESLDYDSLNDELARLRRALYFDLG  399
            S+ P+                  + P+IL LSP+L  +     L  ++  +R+ L+ D G
Sbjct  345  SMVPG------------------ACPLILRLSPTLHSA----DLIRDIDAMRWFLFEDTG  382

Query  400  VPFPGINVR--PNPA--LPGLCYVLNLNEIPMSRGVLEKGMSLVRDTRENLAMMGVA---  452
            VP+P +N+   P+P+  L  L Y              E   SL   ++ +  ++G     
Sbjct  383  VPLPEVNIEVLPEPTEKLTVLLYQ-------------EPVFSLSIPAQADYLLIGADASV  429

Query  453  VREGERFLPEVEPL-WVPDEQCRLLEKAGIGHMSHARILAYHLSLVLSRHASTFIGMQEA  511
            V +++ +   +  + W+  +  +  +  G++  + ++ ++  L  VL RH + FIG+QE+
Sbjct  430  VGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHMGEFIGVQET  489

Query  512  KYLLDRMEERAPDLVREVTRLLPVQRIAEIFQRLVQEQVSIRDLRSILEALIEWSAKEKD  571
            +YL++ ME   ++LV+E+ R LP+++IAE +QRLV E+VSIRDLR I+ +LI+W+++EKD
Sbjct  490  RYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKD  549

Query  572  TVMLTEYVRSALKRQISYMHSRGQNMLPAILLDPGVEETIRKAVRQTSAGAFLALEPAVT  631
             +MLTEYVR AL+R+I    +   + LP + ++ G+E+ +R ++RQT+ G++ AL +   
Sbjct  550  VLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHK  609

Query  632  ERFMKAVADAAGPYAQQTQKPVIMTSMDIRRYVRRLIEGDHYTLAVMSYQELTPEISVQP  691
             ++++ + +A     +Q+ K  I+TS+D RR++R++ E+  + ++++S QEL  E  +Q 
Sbjct  610  TQILQLIEQA----LKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQV  665

Query  692  VNRIRL  697
            V+ I L
Sbjct  666  VESIDL  671

91) DVUA0104 in NC_005863


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  357 bits (1340),  Expect = 1e-99, Method: Compositional matrix adjust.
 Identities = 269/666 (41%), Positives = 450/666 (68%), Gaps = 48/666 (7%)

Query  41   LVDTLIGANMALSFVMLMMSMYVKSILDFSVFPTMLLFTTLFRVGLNITTTRLILLQADA  100
            +VD LI  N+ +S ++L++++Y+   LD+SVFP++LL+TTL+R++L I+T+RL+LLQ +A
Sbjct  45   MVDILITINLMFSVILLLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNA  104

Query  101  GEIIFVFGEYalggnfvvgavvfviltivQFLVIAKGAERVAEVGARFTLDAMPGKQMSI  160
            G+I+  FG + +GGN+ VG VVF I+TIVQF+VI+KG ERVAEV+ARF+LD+MPGKQMSI
Sbjct  105  GNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSI  164

Query  161  DADMRAGVIDMEEAQRRRNTVSQESQMYGAMDGAMKFVKGDSIAGMIVALVNIVGGTVIG  220
            D+D+RAGVID ++A+  R+ V QES+  GAMDGAMKFVKGD+IAG+IV LVNI+GG +I+
Sbjct  165  DGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIA  224

Query  221  ITQHGMAAGEALHTYGILTIGDGLVSQIPSLLVSISAGILITR-SGDSGGNVGAQIGGQI  279
            I Q +M+ +EA+HTY++L+IGDGL +QIPSLL+S+SAGI++TR +G+   N+++++++QI
Sbjct  225  IVQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQI  284

Query  280  FGQPKALLMAGGLVFLFALVPGFPKPQlmglalalggfgYVLRRMAELPAETDPRAELSR  339
              QP++L++++ ++ L+AL+PGFP   L  ++  L+    ++RR   + +  +  A    
Sbjct  285  ARQPQSLILTAVVLMLLALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKD  344

Query  340  SLAPAVKPRPARGGAQQGDDFAPTVPIILDLSPALGESLDYDSLNDELARLRRALYFDLG  399
            S+ P+                  + P+IL LSP+L  +     L  ++  +R+ L+ D G
Sbjct  345  SMVPG------------------ACPLILRLSPTLHSA----DLIRDIDAMRWFLFEDTG  382

Query  400  VPFPGINVR--PNPA--LPGLCYVLNLNEIPMSRGVLEKGMSLVRDTRENLAMMGVA---  452
            VP+P +N+   P+P+  L  L Y              E   SL   ++ +  ++G     
Sbjct  383  VPLPEVNIEVLPEPTEKLTVLLYQ-------------EPVFSLSIPAQADYLLIGADASV  429

Query  453  VREGERFLPEVEPL-WVPDEQCRLLEKAGIGHMSHARILAYHLSLVLSRHASTFIGMQEA  511
            V +++ +   +  + W+  +  +  +  G++  + ++ ++  L  VL RH + FIG+QE+
Sbjct  430  VGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHMGEFIGVQET  489

Query  512  KYLLDRMEERAPDLVREVTRLLPVQRIAEIFQRLVQEQVSIRDLRSILEALIEWSAKEKD  571
            +YL++ ME   ++LV+E+ R LP+++IAE +QRLV E+VSIRDLR I+ +LI+W+++EKD
Sbjct  490  RYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKD  549

Query  572  TVMLTEYVRSALKRQISYMHSRGQNMLPAILLDPGVEETIRKAVRQTSAGAFLALEPAVT  631
             +MLTEYVR AL+R+I    +   + LP + ++ G+E+ +R ++RQT+ G++ AL +   
Sbjct  550  VLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHK  609

Query  632  ERFMKAVADAAGPYAQQTQKPVIMTSMDIRRYVRRLIEGDHYTLAVMSYQELTPEISVQP  691
             ++++ + +A     +Q+ K  I+TS+D RR++R++ E+  + ++++S QEL  E  +Q 
Sbjct  610  TQILQLIEQA----LKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQV  665

Query  692  VNRIRL  697
            V+ I L
Sbjct  666  VESIDL  671

92) Deval_3200 in NC_017311


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  357 bits (1340),  Expect = 1e-99, Method: Compositional matrix adjust.
 Identities = 269/666 (41%), Positives = 450/666 (68%), Gaps = 48/666 (7%)

Query  41   LVDTLIGANMALSFVMLMMSMYVKSILDFSVFPTMLLFTTLFRVGLNITTTRLILLQADA  100
            +VD LI  N+ +S ++L++++Y+   LD+SVFP++LL+TTL+R++L I+T+RL+LLQ +A
Sbjct  45   MVDILITINLMFSVILLLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNA  104

Query  101  GEIIFVFGEYalggnfvvgavvfviltivQFLVIAKGAERVAEVGARFTLDAMPGKQMSI  160
            G+I+  FG + +GGN+ VG VVF I+TIVQF+VI+KG ERVAEV+ARF+LD+MPGKQMSI
Sbjct  105  GNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSI  164

Query  161  DADMRAGVIDMEEAQRRRNTVSQESQMYGAMDGAMKFVKGDSIAGMIVALVNIVGGTVIG  220
            D+D+RAGVID ++A+  R+ V QES+  GAMDGAMKFVKGD+IAG+IV LVNI+GG +I+
Sbjct  165  DGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIA  224

Query  221  ITQHGMAAGEALHTYGILTIGDGLVSQIPSLLVSISAGILITR-SGDSGGNVGAQIGGQI  279
            I Q +M+ +EA+HTY++L+IGDGL +QIPSLL+S+SAGI++TR +G+   N+++++++QI
Sbjct  225  IVQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQI  284

Query  280  FGQPKALLMAGGLVFLFALVPGFPKPQlmglalalggfgYVLRRMAELPAETDPRAELSR  339
              QP++L++++ ++ L+AL+PGFP   L  ++  L+    ++RR   + +  +  A    
Sbjct  285  ARQPQSLILTAVVLMLLALIPGFPFITLAFFSALLALPIILIRRKKSVVSANGVEAPEKD  344

Query  340  SLAPAVKPRPARGGAQQGDDFAPTVPIILDLSPALGESLDYDSLNDELARLRRALYFDLG  399
            S+ P+                  + P+IL LSP+L  +     L  ++  +R+ L+ D G
Sbjct  345  SMVPG------------------ACPLILRLSPTLHSA----DLIRDIDAMRWFLFEDTG  382

Query  400  VPFPGINVR--PNPA--LPGLCYVLNLNEIPMSRGVLEKGMSLVRDTRENLAMMGVA---  452
            VP+P +N+   P+P+  L  L Y              E   SL   ++ +  ++G     
Sbjct  383  VPLPEVNIEVLPEPTEKLTVLLYQ-------------EPVFSLSIPAQADYLLIGADASV  429

Query  453  VREGERFLPEVEPL-WVPDEQCRLLEKAGIGHMSHARILAYHLSLVLSRHASTFIGMQEA  511
            V +++ +   +  + W+  +  +  +  G++  + ++ ++  L  VL RH + FIG+QE+
Sbjct  430  VGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHMGEFIGVQET  489

Query  512  KYLLDRMEERAPDLVREVTRLLPVQRIAEIFQRLVQEQVSIRDLRSILEALIEWSAKEKD  571
            +YL++ ME   ++LV+E+ R LP+++IAE +QRLV E+VSIRDLR I+ +LI+W+++EKD
Sbjct  490  RYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKD  549

Query  572  TVMLTEYVRSALKRQISYMHSRGQNMLPAILLDPGVEETIRKAVRQTSAGAFLALEPAVT  631
             +MLTEYVR AL+R+I    +   + LP + ++ G+E+ +R ++RQT+ G++ AL +   
Sbjct  550  VLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHK  609

Query  632  ERFMKAVADAAGPYAQQTQKPVIMTSMDIRRYVRRLIEGDHYTLAVMSYQELTPEISVQP  691
             ++++ + +A     +Q+ K  I+TS+D RR++R++ E+  + ++++S QEL  E  +Q 
Sbjct  610  TQILQLIEQA----LKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQV  665

Query  692  VNRIRL  697
            V+ I L
Sbjct  666  VESIDL  671

93) NH44784_014751 in NC_021285


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  355 bits (1334),  Expect = 4e-99, Method: Compositional matrix adjust.
 Identities = 290/697 (42%), Positives = 484/697 (70%), Gaps = 47/697 (6%)

Query  8    VAAATSRNDIVLAVLIVSIIFMMILPLPTTLVDVLIGANMTLSAILLMVAMYlpsplafs  67
            ++  ++R+D+VLA +++  I MM+LPLPT +VD+LI  N+ +S ILL++A+YL+ PL +S
Sbjct  15   LSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLS  74

Query  68   sfpsvllvTTLFRLGISIATTRLILLQGDAGHIIETfgnfvvggnlivglvvflilTIVQ  127
             FPS+LL+TTL+RL+++I+T+RL+LLQ +AG+I+++FG+FVVGGNL VGLVVF I+TIVQ
Sbjct  75   VFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQ  134

Query  128  FVVITKGAERVAEVAARFSLDAMPGKQMSIDADLRAGTIDMDEARKRRSVVEKESQLYGA  187
            F+VITKG ERVAEV+ARFSLD+MPGKQMSID+DLRAG ID D+AR  R  V++ES++ GA
Sbjct  135  FIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGA  194

Query  188  MDGAMKFVKGDAIAGLIIVAVNLLGGILIGTMQRGLSAGEAVQVYSILTIGDGLIAQIPA  247
            MDGAMKFVKGD+IAG+I+V VN++GGI+I+ +Q ++S +EAV+ YS+L+IGDGL +QIP+
Sbjct  195  MDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPS  254

Query  248  LFIAICAGIIVTRVQTGDGPSNVGKDIGAQVLAQPRalliaaaiaigmglipgmpTLTFL  307
            L+I++ AGIIVTRV  G+   N++ ++++Q+  QP+        A+ + L++ +P + F+
Sbjct  255  LLISLSAGIIVTRV-PGEKRQNLATELSSQIARQPQ---SLILTAVVLMLLALIPGFPFI  310

Query  308  ALA--AVVGTIGFVLLRGTRKVVDEKTGEITEIPALAADGQKPQARPRADGSAEFAPTLP  365
            +LA  + + ++ ++L+R  + VV  +  E  E  ++ +++                   P
Sbjct  311  TLAFFSALLALPIILIRRKKSVVSANGVEAPEKDSMVPGAC------------------P  352

Query  366  LMIDVAAALQRSFDADELNEELLKIRRALYFDLGVPFPGIQLRFNDAL--PADSYNILLS  423
            L++ ++++L+    + +L  ++  +R+ L+ D GVP+P +++   + L  P++   +LL 
Sbjct  353  LILRLSPTLH----SADLIRDIDAMRWFLFEDTGVPLPEVNI---EVLPEPTEKLTVLLY  405

Query  424  EVPVSQGKLRPGAVLVRDTEQNLQALQVPYETDKRFLPN--VPTLWVDAGLAPTLTAAGI  481
            + PV    + +      +++  L + + +   D + LPN      W+  ++A    + G+
Sbjct  406  QEPVFSLSIPA------QADYLLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGL  459

Query  482  P-FLDPHQVLTWHLAFVLKKYSSDFIGIQETRFLLTAMEDRFPDLVKEALRVMPVQKIAE  540
              F +++++ +  L  VL +  ++FIG+QETR+L+ AME  +++LVKE  R +P++KIAE
Sbjct  460  DVFAGSQRISA-LLKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAE  518

Query  541  ILQRLVSEDISVRNLRAVLEALIEWGQKEKDSVLLTEYVRVSLKRHISYKYSSGQNILPA  600
             LQRLVSE +S+R+LR ++ +LI+W+ +EKD ++LTEYVR++L+RHI  + ++  + LP 
Sbjct  519  TLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPI  578

Query  601  YLLAPNVEETVRGAIRQTSAGSYLALDPNASRKLVDNIKRVAGDLTAAAQKPVLLTSMDI  660
              ++  +E+ VR +IRQT+ G+Y AL +    ++++ I +    L  +A K  ++TS+D 
Sbjct  579  LRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQ---ALKQSA-KLFIVTSVDT  634

Query  661  RRYLRKMIEQDLYELPVLSYQELTQEINVQPLARVDL  697
            RR+LRK+ E  L+++P+LS QEL +E  +Q +  +DL
Sbjct  635  RRFLRKITEATLFDVPILSWQELGEESLIQVVESIDL  671

94) bcrD in NC_002928


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  350 bits (1313),  Expect = 2e-97, Method: Compositional matrix adjust.
 Identities = 285/680 (42%), Positives = 485/680 (72%), Gaps = 35/680 (5%)

Query  8    LRLQRAVALATSRNDivlavlivaivFMMILPLPTTLVDVLIGANMTLSAVLLMVAMYlp  67
            +R Q+ +++ ++R+D+VLA +++  + MM+LPLPT +VD+LI  N+ +S +LL++A+YL+
Sbjct  9    VRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLS  68

Query  68   splafssfpsvllvTTLFRLGISIATTRLILLQGDAGHIIETfgnfvvggnlivglvvfl  127
             PL +S FPS+LL+TTL+RL+++I+T+RL+LLQ +AG+I+++FG+FVVGGNL VGLVVF 
Sbjct  69   DPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFT  128

Query  128  ilTIVQFVVITKGAERVAEVAARFSLDAMPGKQMSIDADLRAGTIDMDEARRRRRTVEKE  187
            I+TIVQF+VITKG ERVAEV+ARFSLD+MPGKQMSID+DLRAG ID D+AR  R+ V++E
Sbjct  129  IITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQE  188

Query  188  SQLYGAMDGAMKFVKGDAIAGLIIvavnllggmlvgvlqrglSAGEAVQTYAILTIGDGL  247
            S++ GAMDGAMKFVKGD+IAG+I+V VN++GG++++++Q ++S +EAV+TY++L+IGDGL
Sbjct  189  SRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGL  248

Query  248  IAQIPALFIAICAGIIVTRVQTGDGPSNVGTDIGAQVLAQPRALVIAGAISAGLGLIPGM  307
             +QIP+L+I++ AGIIVTRV  G+   N++T++++Q+  QP++L++++ +   L+LIPG 
Sbjct  249  CGQIPSLLISLSAGIIVTRV-PGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGF  307

Query  308  P--TLVFFALAAVVGTIGFVLLRASQRPPEGAGPALAGMAADGQPRTRAPADGQAEFAPT  365
            P  TL FF   + + ++ ++L+R  +    + G                +++ ++  + +
Sbjct  308  PFITLAFF---SALLALPIILIRRKKSVVSANGV--------------EAPEKDSMVPGA  350

Query  366  VPLIIDVAARLQPRFEPATLTDDLLQIRRALYFDLGVPFPGIQLRFTEALAANTYTIVLS  425
             PLI+    RL P +++A L  D+  +R+ L+ D GVP+P +++      +++  T++L 
Sbjct  351  CPLIL----RLSPTLHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPE-PTEKLTVLLY  405

Query  426  EIPV-AQGMLRDDAVLVRDTEQNLQALRIAYETGAAFLPDTPTIWVAASLTGALRDAGIP  484
            + PV + ++  +   L+ +++ ++ +   +   G +        W++  ++   ++ G+ 
Sbjct  406  QEPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMG-----QICWLTKDMAHKAQGFGLD  460

Query  485  YLGISQILTWHLAYVLKKYSADFIGIQETRFLLSAMEERFPDLVKECLRVMPVQKIAEIL  544
             ++ SQ ++  L  VL +  ++FIG+QETR+L++AME  +++LVKE  R +P++KIAE L
Sbjct  461  VFAGSQRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETL  520

Query  545  QRLVSEEVSIRNLRAVLEALVEWGQKEKDTVLLTEYVRIALKRYISYKYTSGHNILPAYL  604
            QRLVSE VSIR+LR ++ +L++W+ +EKD ++LTEYVRIAL+R I  +  +  + LP   
Sbjct  521  QRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILR  580

Query  605  LAPKVEETVRAAIRQTAAGSYLALDPDTTRRLVEYIRQCVGDLAAGASRPVLLTSMDIRR  664
            ++  +E+ VR +IRQTA G+Y AL +    ++++ I Q + +    +++  ++TS+D RR
Sbjct  581  IGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQ----SAKLFIVTSVDTRR  636

Query  665  YTRKMIEADLYALPVLSYRN  684
            + RK+ EA L+ +P+LS ++
Sbjct  637  FLRKITEATLFDVPILSWQE  656

95) lcrD in NC_015717


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  349 bits (1311),  Expect = 3e-97, Method: Compositional matrix adjust.
 Identities = 292/698 (42%), Positives = 476/698 (69%), Gaps = 43/698 (6%)

Query  5    QRFLQVASGRNDivlavlliaiifmmiiplppvvmDMLQALNLTISAILLMVAVYIKSPL  64
            Q+ L V +GR+D+VLA +L+  I MM++PLP  ++D+L ++NL +S ILL++A+Y+  PL
Sbjct  12   QQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPL  71

Query  65   AFVSFPsllllttlfrlslGIASTRLILLEANAGDIITTFGNFVVAGNLVVGAVIFLIIT  124
             +  FPSLLL+TTL+RLSL I+++RL+LL+ NAG+I+ +FG+FVV+GNL VG V+F IIT
Sbjct  72   DLSVFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIIT  131

Query  125  IVQFIVITKGSERVAEVAARFSLDAMPGKQMSIDGDMRAGTIDMNEARRRRGMVEKESQL  184
            IVQFIVITKG ERVAEV+ARFSLD+MPGKQMSIDGD+RAG ID ++AR  R  V++ES++
Sbjct  132  IVQFIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRF  191

Query  185  YGAMDGAMKFVKGDaiagligiavnllggiaigagqlgMSVSDAVNTYSILTIGDGLVGQ  244
             GAMDGAMKFVKGD+IAG+I + VN++GGI I+  Q +MS+S+AV+TYS+L+IGDGL GQ
Sbjct  192  LGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQ  251

Query  245  IPGLFTSITAGFIVTRVSSEEAGTNLGDEIGGEVTAQPKALMVASSILVIFAVIPGFPTT  304
            IP+L+ S++AG+IVTRV++E    NL+ E++++++ QP++L++++ +L+++A+IPGFP  
Sbjct  252  IPSLLISLSAGIIVTRVPGEKR-QNLATELSSQIARQPQSLILTAVVLMLLALIPGFP--  308

Query  305  IFLALAVLSGGGGYMLHRQATMPKQDGDPFSANLPAASASGGTPTVRRAGNDADDFSLTV  364
             F++LA +S+    +L     + ++          +  ++ G  +  + +  ++    + 
Sbjct  309  -FITLAFFSA----LLALPIILIRRK--------KSVVSANGVEAPEKDSMVPG----AC  351

Query  365  PVMVDVGTDVQTLIRPDALNDTLAQVRRALYYDLGVPFPGINLR-LNDRYNGGRYVILLN  423
            P+++ ++  +++      L   +  +R+ L+ D GVP+P +N+  L +     +  +LL 
Sbjct  352  PLILRLSPTLHS----ADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPE--PTEKLTVLLY  405

Query  424  EVPCGEGHMRSGFLLARDSVENLSLLGIPNET--DKPFLP--LIETIWVAQEHRPALEAG  479
            + P         F L+  +  +  L+G       D   LP  + +  W++++     ++ 
Sbjct  406  QEP--------VFSLSIPAQADYLLIGADASVVGDSQTLPNGMGQICWLTKDMAHKAQGF  457

Query  480  SVSFMEPAQLLSYHIGHVLRRYAEEFIGIQETRFLLSRMEERFPELVKEVQRIVPLQRIA  539
            ++     +Q +S  +  VL R   EFIG+QETR+L++ ME  ++ELVKE+QR +P+++IA
Sbjct  458  GLDVFAGSQRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIA  517

Query  540  EILQRLVSEGVSVRNMRAILTALIDWGQKEKDVVLLTEHIRGALKRQICYRHSSGLNILP  599
            E LQRLVSE VS+R++R I+ +LIDW+ +EKDV++LTE +R AL+R+I  R ++  + LP
Sbjct  518  ETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLP  577

Query  600  AYVVTPELEDTVRNAVRQTSSGSYLALDPRTTRQIIEKvqgalggvgqqaRKPVLLTAMD  659
               +   +E+ VR+++RQT+ G+Y AL +R   QI++     +    +Q+ K  ++T++D
Sbjct  578  ILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQ----LIEQALKQSAKLFIVTSVD  633

Query  660  IRRYVKKIVEGDCPDLPVLSYQELTPEITVQPLARVSL  697
             RR+++KI E+   D+P+LS QEL  E  +Q +  + L
Sbjct  634  TRRFLRKITEATLFDVPILSWQELGEESLIQVVESIDL  671

96) M892_04485 in NC_022269


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  345 bits (1297),  Expect = 4e-96, Method: Compositional matrix adjust.
 Identities = 291/701 (42%), Positives = 491/701 (71%), Gaps = 47/701 (6%)

Query  8    LNKVGQRKDIMLAVMLLAIVFMMILPLPTALVDVLIGTNMSIAVVLLMLAIYITKPLEFS  67
            L+  + R+D++LA +LL  + MM+LPLPT +VD+LI  N+ ++V+LL++AIY++ PL++S
Sbjct  15   LSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLS  74

Query  68   AFPAVllittlfrlslsitttrlillQGDAGQIVYtfgnfvvggnlvvgivvfliitivQ  127
             FP++LLITTL+RLSL+I+T+RL+LLQ +AG+IV +FG+FVVGGNL VG+VVF IITIVQ
Sbjct  75   VFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQ  134

Query  128  FMVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVHEARHRRSLIEKESQMYGS  187
            F+VITKG ERVAEVSARFSLD+MPGKQMSIDGD+RAGVID ++AR  R  +++ES+  G+
Sbjct  135  FIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGA  194

Query  188  MDGAMKFVKGDSIAgliiivvnilggvtigvtQKGMSASEALELFAILTVGDGLVSQIPA  247
            MDGAMKFVKGD+IAG+I+++VNI+GG+ I++ Q +MS SEA++ +++L++GDGL +QIP+
Sbjct  195  MDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPS  254

Query  248  LFIAITAGIIVTRVSNEDSSDLGSDIGGQVTAQPRALLVGGVLLILFALIPGFPKVTFLI  307
            L+I+++AGIIVTRV+ E   +L++++++Q++ QP++L++ +V+L+L+ALIPGFP +T+ +
Sbjct  255  LLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAF  314

Query  308  LAAIVGGGGFFLFYQQKKQSEYDSSDLPSFVAQGAGSPAAKPNKPTPSRNSKGKLGEQEE  367
            ++A+++    +++ ++KK            V  + G  A+  +   P+            
Sbjct  315  FSALLALP--IILIRRKKS-----------VVSANGVEAPEKDSMVPG------------  349

Query  368  FAMTVPLLIDLDSRLQESLEAVALNDELARVRRALYLDLGVPFPGIHLR-FNEGMSNGEY  426
               + PL++    RL  +L++  L  ++  +R+ L+ D GVP+P +++  + E   +   
Sbjct  350  ---ACPLIL----RLSPTLHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTV  402

Query  427  LIQLQEVPVARGRIESEKLLVTEGNEQIDLLGVPYEKDDDFLP-GITSI-WVDQSHHEKL  484
            L+  + V       +++ LL+  +   ++        D + LP G+  I W+ +   +K 
Sbjct  403  LLYQEPVFSLSIPAQADYLLIGADASVVG--------DSQTLPNGMGQICWLTKDMAHKA  454

Query  485  QNSHVGFLTPDRILTYHLSHVLKEYAQDFIGIQETRYLLEQMESSYSELVKEAQRIVPLQ  544
            Q   ++ ++  + ++  L  VL     +FIG+QETRYL++ ME +YSELVKE QR +P++
Sbjct  455  QGFGLDVFAGSQRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQRQLPIN  514

Query  545  KMTEILQRLVSEDISIRNLRVILEAMVEWGQKEKDVVQLTEYIRSSLKRYICYKYASGQN  604
            K++E LQRLVSE +SIR+LR+I+ ++++W+ +EKDV+ LTEY+R +L+R I  +  +  +
Sbjct  515  KIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLNPEGK  574

Query  605  MLPAYLLDQSLEDTIRNGIRQTSAGSYLALDPSVTQQFVSDVKQTIGDLSRMPNKPVLVV  664
             LP   +++++E+ +R++IRQT+ G+Y AL +    Q++  + Q++    + + K  +V 
Sbjct  575  PLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQAL----KQSAKLFIVT  630

Query  665  SMDVRRYVRKLIESEYYELPVLSFQELTQQINIQPLGRVGM  705
            S+D RR++RK+ E+  +++P+LS QEL ++  IQ +  +++
Sbjct  631  SVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESIDL  671

97) VIBHAR_01736 in NC_009783


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  345 bits (1297),  Expect = 4e-96, Method: Compositional matrix adjust.
 Identities = 291/701 (42%), Positives = 491/701 (71%), Gaps = 47/701 (6%)

Query  8    LNKVGQRKDIMLAVMLLAIVFMMILPLPTALVDVLIGTNMSIAVVLLMLAIYITKPLEFS  67
            L+  + R+D++LA +LL  + MM+LPLPT +VD+LI  N+ ++V+LL++AIY++ PL++S
Sbjct  15   LSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLS  74

Query  68   AFPAVllittlfrlslsitttrlillQGDAGQIVYtfgnfvvggnlvvgivvfliitivQ  127
             FP++LLITTL+RLSL+I+T+RL+LLQ +AG+IV +FG+FVVGGNL VG+VVF IITIVQ
Sbjct  75   VFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQ  134

Query  128  FMVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVHEARHRRSLIEKESQMYGS  187
            F+VITKG ERVAEVSARFSLD+MPGKQMSIDGD+RAGVID ++AR  R  +++ES+  G+
Sbjct  135  FIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGA  194

Query  188  MDGAMKFVKGDSIAgliiivvnilggvtigvtQKGMSASEALELFAILTVGDGLVSQIPA  247
            MDGAMKFVKGD+IAG+I+++VNI+GG+ I++ Q +MS SEA++ +++L++GDGL +QIP+
Sbjct  195  MDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPS  254

Query  248  LFIAITAGIIVTRVSNEDSSDLGSDIGGQVTAQPRALLVGGVLLILFALIPGFPKVTFLI  307
            L+I+++AGIIVTRV+ E   +L++++++Q++ QP++L++ +V+L+L+ALIPGFP +T+ +
Sbjct  255  LLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAF  314

Query  308  LAAIVGGGGFFLFYQQKKQSEYDSSDLPSFVAQGAGSPAAKPNKPTPSRNSKGKLGEQEE  367
            ++A+++    +++ ++KK            V  + G  A+  +   P+            
Sbjct  315  FSALLALP--IILIRRKKS-----------VVSANGVEAPEKDSMVPG------------  349

Query  368  FAMTVPLLIDLDSRLQESLEAVALNDELARVRRALYLDLGVPFPGIHLR-FNEGMSNGEY  426
               + PL++    RL  +L++  L  ++  +R+ L+ D GVP+P +++  + E   +   
Sbjct  350  ---ACPLIL----RLSPTLHSADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTV  402

Query  427  LIQLQEVPVARGRIESEKLLVTEGNEQIDLLGVPYEKDDDFLP-GITSI-WVDQSHHEKL  484
            L+  + V       +++ LL+  +   ++        D + LP G+  I W+ +   +K 
Sbjct  403  LLYQEPVFSLSIPAQADYLLIGADASVVG--------DSQTLPNGMGQICWLTKDMAHKA  454

Query  485  QNSHVGFLTPDRILTYHLSHVLKEYAQDFIGIQETRYLLEQMESSYSELVKEAQRIVPLQ  544
            Q   ++ ++  + ++  L  VL     +FIG+QETRYL++ ME +YSELVKE QR +P++
Sbjct  455  QGFGLDVFAGSQRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQRQLPIN  514

Query  545  KMTEILQRLVSEDISIRNLRVILEAMVEWGQKEKDVVQLTEYIRSSLKRYICYKYASGQN  604
            K++E LQRLVSE +SIR+LR+I+ ++++W+ +EKDV+ LTEY+R +L+R I  +  +  +
Sbjct  515  KIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLNPEGK  574

Query  605  MLPAYLLDQSLEDTIRNGIRQTSAGSYLALDPSVTQQFVSDVKQTIGDLSRMPNKPVLVV  664
             LP   +++++E+ +R++IRQT+ G+Y AL +    Q++  + Q++    + + K  +V 
Sbjct  575  PLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQAL----KQSAKLFIVT  630

Query  665  SMDVRRYVRKLIESEYYELPVLSFQELTQQINIQPLGRVGM  705
            S+D RR++RK+ E+  +++P+LS QEL ++  IQ +  +++
Sbjct  631  SVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESIDL  671

98) DvMF_2415 in NC_011769


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  342 bits (1284),  Expect = 4e-95, Method: Compositional matrix adjust.
 Identities = 268/668 (41%), Positives = 450/668 (68%), Gaps = 51/668 (7%)

Query  39   LVDTLIGANMALSFVMLMMSMYVRSVLDFSVFPTMLLFTTLFRVGLNITTTRLILLQADA  98
            +VD LI  N+ +S ++L++++Y+   LD+SVFP++LL+TTL+R++L I+T+RL+LLQ +A
Sbjct  45   MVDILITINLMFSVILLLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQHNA  104

Query  99   GEIIFVFGEYalggnfvvgavvfviltivQFLVIAKGAERVAEVGARFTLDAMPGKQMSI  158
            G+I+  FG + +GGN+ VG VVF I+TIVQF+VI+KG ERVAEV+ARF+LD+MPGKQMSI
Sbjct  105  GNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGKQMSI  164

Query  159  DADMRAGVIDMEEAQRRRNMVSQESQMYGAMDGAMKFVKGDSIAGMivavvnivggtvig  218
            D+D+RAGVID ++A+  R+ V QES+  GAMDGAMKFVKGD+IAG+IV +VNI+GG +I+
Sbjct  165  DGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNIIGGIIIA  224

Query  219  iTQHGMTGADALHTYGILTIGDGLVSQIPSLLVSISAGILITRT-GDSGGNVGAQIGGQI  277
            I Q +M+ ++A+HTY++L+IGDGL +QIPSLL+S+SAGI++TR  G+   N+++++++QI
Sbjct  225  IVQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNLATELSSQI  284

Query  278  FGQPKALLMAGGLVFLFALVPGFPKPQlfglalaiggfgYVLQRMAEAPVAADPRAELSR  337
              QP++L++++ ++ L+AL+PGFP    +++  A+ ++  +L R   + V+A+      +
Sbjct  285  ARQPQSLILTAVVLMLLALIPGFP-FITLAFFSALLALPIILIRRKKSVVSANGVEAPEK  343

Query  338  SLapaarprtprpgaaqpGDDFAP-TVPIILDLSAELGEALHYDALNEELINLRRALYFD  396
                               D   P + P+IL LS+    +LH   L  ++  +R+ L+ D
Sbjct  344  -------------------DSMVPGACPLILRLSP----TLHSADLIRDIDAMRWFLFED  380

Query  397  LGVPFPGINI----RPSPGLEGLSYVLNLNEIPMSRGTLERGMSLARDTSENLAMLGVNA  452
             GVP+P +NI     P+  L  L Y              E   SL+  +  +  ++G +A
Sbjct  381  TGVPLPEVNIEVLPEPTEKLTVLLYQ-------------EPVFSLSIPAQADYLLIGADA  427

Query  453  RT--GERFLPD-VDPL-WVPDEQLHLLDKAGIGHMSHARILAYHLSLVLSRHASNFLGMQ  508
                + + LP+ ++ + W+  +  H  +  G++  + ++ ++  L  VL RH ++F+G+Q
Sbjct  428  SVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRHMGEFIGVQ  487

Query  509  EAKYLLDRMEERAPDLVREATRLLPVQRIAEIFQRLVQEQISIRDLRNILEALIEWSPKE  568
            E++YL++ ME   ++LV+E  R LP+++IAE +QRLV E++SIRDLR I+ +LI+W+P+E
Sbjct  488  ETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPRE  547

Query  569  KDTVMLTEYVRGALKRQISYMHSRGQNMLPAILLDPQVEETIRKAIRQTSAGAFLALEPS  628
            KD +MLTEYVR AL+R+I    +   + LP + ++  +E+ +R +IRQT+ G++ AL + 
Sbjct  548  KDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSR  607

Query  629  VTERFMKAVGDAAGRYASHAQKPVIMTSMDIRRYVRRLIEGDHYGLAVISYQELTPEISV  688
               ++++ + +A      ++ K  I+TS+D RR++R++ E+  ++++++S QEL  E  +
Sbjct  608  HKTQILQLIEQA----LKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLI  663

Query  689  QPVNRIRL  696
            Q V+ I L
Sbjct  664  QVVESIDL  671

99) VEA_003372 in NC_013456


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  339 bits (1271),  Expect = 4e-94, Method: Compositional matrix adjust.
 Identities = 289/700 (42%), Positives = 484/700 (70%), Gaps = 45/700 (6%)

Query  8    LNKVGQRKDIMLAVMLLAIVFMMILPLPTALVDVLIGTNMSIAVVLLMLAIYITTPLEFS  67
            L+  + R+D++LA +LL  + MM+LPLPT +VD+LI  N+ ++V+LL++AIY++ PL++S
Sbjct  15   LSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLS  74

Query  68   AFPAVllittlfrlslsitttrlillQGDAGQIVYtfgnfvvggnlvvgivvfliitivQ  127
             FP++LLITTL+RLSL+I+T+RL+LLQ +AG+IV +FG+FVVGGNL VG+VVF IITIVQ
Sbjct  75   VFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQ  134

Query  128  FMVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVHEARHRRSLIEKESQMYGS  187
            F+VITKG ERVAEVSARFSLD+MPGKQMSIDGD+RAGVID ++AR  R  +++ES+  G+
Sbjct  135  FIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGA  194

Query  188  MDGAMKFVKGDSIAglviivvnilggvtigvtQKGMSASEALELFAILTVGDGLVSQIPA  247
            MDGAMKFVKGD+IAG+++++VNI+GG+ I++ Q +MS SEA++ +++L++GDGL +QIP+
Sbjct  195  MDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPS  254

Query  248  LFIAITAGIIVTRVSHEDSSDLGSDIGGQVIAQPRALLIGGVLLVLFALIPGFPKITFLV  307
            L+I+++AGIIVTRV+ E   +L++++++Q+  QP++L++ +V+L+L+ALIPGFP   F+ 
Sbjct  255  LLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFP---FIT  311

Query  308  LATVVGGGGFFLFYQQKKQAASDTTDLSSFVSQgagspaakpskpTPSRNSKGKLGEQEE  367
            LA       FF          S    L+ ++ +   S  +  +  +P ++S         
Sbjct  312  LA-------FF----------SALLALPIILIRRKKSVVSANGVEAPEKDSMV-------  347

Query  368  FAMTVPLLIDLDASLQESLEAVALNEELARVRRALYLDLGVPFPGIHLR-FNEGMQNGEY  426
             + + PL++ L ++L+ +     L  ++  +R+ L+ D GVP+P +++  + E  ++   
Sbjct  348  -PGACPLILRLSPTLHSA----DLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTV  402

Query  427  LIQLQEVPVARGRIVKDQLLVTEGNEQIDLLGVPYEQDEDFLPGISSI-WVAQSYEQKLT  485
            L+  + V         D LL+  +   ++       + + +  G++ I W+++   +K  
Sbjct  403  LLYQEPVFSLSIPAQADYLLIGADASVVG-------DSQTLPNGMGQICWLTKDMAHKAQ  455

Query  486  TSHVGFLTPDRILTYHLSHVLKEYAQDFIGIQETRYLLEQMEGSYSELVKEAQRIVPLQK  545
               ++ ++  + ++  L  VL     +FIG+QETRYL++ ME +YSELVKE QR +P++K
Sbjct  456  GFGLDVFAGSQRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQRQLPINK  515

Query  546  MTEILQRLVSEDISIRNLRVILEAMVEWGQKEKDVVQLTEYIRSSLKRYICYKYASGQNM  605
            ++E LQRLVSE +SIR+LR+I+ ++++W+ +EKDV+ LTEY+R +L+R I  +  +  + 
Sbjct  516  IAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKP  575

Query  606  LPAYLLDQSLEDTIRSGIRQTSAGSYLALDPSVTQQFVSDVKQTIGDLSRMPNKPVLVVS  665
            LP   +++++E+ +R +IRQT+ G+Y AL +    Q++  + Q++    + + K  +V S
Sbjct  576  LPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQAL----KQSAKLFIVTS  631

Query  666  MDVRRYVRKLIESEYYDLPVLSFQELTQQINIQPLGRVGM  705
            +D RR++RK+ E+  +D+P+LS QEL ++  IQ +  +++
Sbjct  632  VDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESIDL  671

100) yscV in NC_016642


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  338 bits (1268),  Expect = 6e-94, Method: Compositional matrix adjust.
 Identities = 282/700 (41%), Positives = 492/700 (71%), Gaps = 56/700 (8%)

Query  4    RNDVLLAFLLIAIVFMMILPLPTVLVDTliainlslaaillmaalylKDVVALSAFPsil  63
            R+D++LA +L+  + MM+LPLPT +VD LI+INL ++ ILL+ A+YL D + LS FPS+L
Sbjct  21   RQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPSLL  80

Query  64   llttlfrlslsitttrlillKADAGEIIDTFGNFVVQGNLVVGIVIFLILTIVNFLVITK  123
            L+TTL+RLSL+I+T+RL+LL+ +AG+I+D+FG+FVV GNL VG+V+F I+TIV+F+VITK
Sbjct  81   LITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVITK  140

Query  124  GSERVAEVSARFSLDAMPGKQMSIDSDMRAGQIELDEAKRRRSKLEKESQLYGSMDGAMK  183
            G ERVAEVSARFSLD+MPGKQMSID+D+RAG I+ D+A+  R  +++ES++ G+MDGAMK
Sbjct  141  GIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMK  200

Query  184  FVKGDAIAGLIITAVNIIGGVIIGTSQHGMSAVDALDRYTILTIGDGLVAQIPALFISIT  243
            FVKGD+IAG+I+  VNIIGG+II+  Q +MS  +A++ Y++L+IGDGL +QIP+L+IS++
Sbjct  201  FVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLS  260

Query  244  AGFMVTRVSTDDSSDLGSDIAKQLNGEPKALMIAAAIMVGFALIPGFPSVIFLLLAAIFG  303
            AG++VTRV+ +   +L+++++ Q+  +P++L+++A +++ +ALIPGFP + + +++A+++
Sbjct  261  AGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAFFSALLA  320

Query  304  SIAYFAMRRTKTQSAKKDSQQLSAFAPAIAPEGEAQMMPDEDMATEVEAAQDLAITITVP  363
             ++ + +RR K+  + ++ +         APE ++ M+P+                 + P
Sbjct  321  -LPIILIRRKKSVVSANGVE---------APEKDS-MVPG-----------------ACP  352

Query  364  LIVDISSSVRSTLNPKKLDREVAKVRKALYFDLGVPFPGIKLRLNESLPEGEYR--ILVN  421
            LI+ +S+    TL++  L R++  +R  L+ D GVP+P +++   E LPE   +  +L+ 
Sbjct  353  LILRLSP----TLHSADLIRDIDAMRWFLFEDTGVPLPEVNI---EVLPEPTEKLTVLLY  405

Query  422  EVPV--ARGAARSGYFIARETPPNLAMFNIPYEEGDSFLPNTPS--FWVSNRHFEQATRA  477
            + PV     +A+++Y++    ++ ++       ++++ LPN  +   W++ ++  + +++
Sbjct  406  QEPVFSLSIPAQADYLLIGADASVVG-------DSQT-LPNGMGQICWLT-KDMAHKAQG  456

Query  478  -GIQTLTLTGMLSLHLAHVLKQHAAEFLGIQECMFLLKHMESDFDELVREVNRAVPLISL  536
             G++ ++ +  +S  L  VL +H +EF+G+QE  +L++ ME ++ ELV+E++R +P+  +
Sbjct  457  FGLDVFAGSQRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKI  516

Query  537  ADVLKRLVREDISIRDMRTILQAIVEWGQKEKDPLMLTEHIRMALSRYITHKYSAGQHII  596
            A+ L+RLV E +SIRD+R I+ ++++W+ +EKD LMLTE +R+AL R I ++ ++    +
Sbjct  517  AETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPL  576

Query  597  PAYLIDKDIEDEVRGAIRQTSGASYLALSPDTHRQLITVMRSAIGDNLAHNGIAPVILVP  656
            P   I+ +IE+ VR +IRQT+ ++Y ALS+    Q++ +    I + L +++    I+ +
Sbjct  577  PILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQL----IEQALKQSA-KLFIVTS  631

Query  657  MDIRRFFRKVIERDYADLAVLSFQELAPNANIQPLEKISL  696
            +D RRF+RK+ E    D+++LS QEL+ ++ IQ +E I L
Sbjct  632  VDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESIDL  671

101) VPBB_1522 in NC_019955


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  335 bits (1257),  Expect = 5e-93, Method: Compositional matrix adjust.
 Identities = 292/702 (42%), Positives = 487/702 (70%), Gaps = 49/702 (6%)

Query  8    LNKVGQRKDIMLAVMLLAIVFMMILPLPTALVDVLIGANMSIAVVLLMLAIYITTPLEFS  67
            L+  + R+D++LA +LL  + MM+LPLPT +VD+LI  N+ ++V+LL++AIY++ PL++S
Sbjct  15   LSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLS  74

Query  68   AFPAVllittlfrlslsitttrlillQGDAGQIVYtfgnfvvggnlvvgivvfliitivQ  127
             FP++LLITTL+RLSL+I+T+RL+LLQ +AG+IV +FG+FVVGGNL VG+VVF IITIVQ
Sbjct  75   VFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQ  134

Query  128  FMVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVHEARHRRSLIEKESQMYGS  187
            F+VITKG ERVAEVSARFSLD+MPGKQMSIDGD+RAGVID ++AR  R  +++ES+  G+
Sbjct  135  FIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGA  194

Query  188  MDGAMKFVKGDSIAglviiivnilggvtigvtQKGMSASEALELFAILTVGDGLVSQIPA  247
            MDGAMKFVKGD+IAG+++++VNI+GG+ I++ Q +MS SEA++ +++L++GDGL +QIP+
Sbjct  195  MDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPS  254

Query  248  LFIAITAGIIVTRVSHEDSADLGSDIGGQVTAQPRALLIGGVLLVLFALIPGFPKITflv  307
            L+I+++AGIIVTRV+ E   +L++++++Q++ QP++L++ +V+L+L+ALIPGFP IT  +
Sbjct  255  LLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFIT--L  312

Query  308  lalvvggggfylfyQQKKQTESESSDLPSFVAQGAGSPAAKPNKPTPSRGSKGKLGEQEE  367
              +    +   ++ ++KK   S         A+G  +P   +  P +             
Sbjct  313  AFFSALLALPIILIRRKKSVVS---------ANGVEAPEKDSMVPGAC------------  351

Query  368  FAMTVPLLIDLDSSLQESLEAVALNDELARVRRALYLDLGVPFPGIHLR-FNDGMKNGEY  426
                 PL++ L ++L+ +     L  ++  +R+ L+ D GVP+P +++  + +   +   
Sbjct  352  -----PLILRLSPTLHSA----DLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTV  402

Query  427  LIQLQEVPVARGRIEKDKLLVTEGSDQIELLGVPFEQDDDFLP-GVSSL-WVAQSYQEKL  484
            L+  + V       + D LL+  ++  +         D + LP G++ + W+++   +K 
Sbjct  403  LLYQEPVFSLSIPAQADYLLIGADASVVG--------DSQTLPNGMGQICWLTKDMAHKA  454

Query  485  TASHVG-FLTPDRILTFHLSHVLKEYAQDFIGIQETRYLLEQMEGSYSELVKEAQRIVPL  543
             +  ++ F  ++RI ++ L  VL     +FIG+QETRYL++ ME +YSELVKE QR +P+
Sbjct  455  QGFGLDVFAGSQRISAL-LKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQRQLPI  513

Query  544  QKMTEILQRLVSEDISIRNLRVILEAMVEWGQKEKDVVQLTEYIRSSLKRYICYKYASGQ  603
            +K++E LQRLVSE +SIR+LR+I+ ++++W+ +EKDV+ LTEY+R +L+R I  +  +  
Sbjct  514  NKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLNPEG  573

Query  604  NMLPAYLLDQSLEDTIRSGIRQTSAGSYLALDPSVTQQFVSDVKQTVGDLSRMPNKPVLV  663
            + LP   +++++E+ +R +IRQT+ G+Y AL +    Q++  + Q++    + + K  +V
Sbjct  574  KPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQAL----KQSAKLFIV  629

Query  664  VSMDVRRYVRKLIESEYYDLPVLSFQELTQQINIQPLGRVGM  705
             S+D RR++RK+ E+  +D+P+LS QEL ++  IQ +  +++
Sbjct  630  TSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESIDL  671

102) M636_13755 in NC_021848


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  335 bits (1257),  Expect = 5e-93, Method: Compositional matrix adjust.
 Identities = 292/702 (42%), Positives = 487/702 (70%), Gaps = 49/702 (6%)

Query  8    LNKVGQRKDIMLAVMLLAIVFMMILPLPTALVDVLIGANMSIAVVLLMLAIYITTPLEFS  67
            L+  + R+D++LA +LL  + MM+LPLPT +VD+LI  N+ ++V+LL++AIY++ PL++S
Sbjct  15   LSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLS  74

Query  68   AFPAVllittlfrlslsitttrlillQGDAGQIVYtfgnfvvggnlvvgivvfliitivQ  127
             FP++LLITTL+RLSL+I+T+RL+LLQ +AG+IV +FG+FVVGGNL VG+VVF IITIVQ
Sbjct  75   VFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQ  134

Query  128  FMVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVHEARHRRSLIEKESQMYGS  187
            F+VITKG ERVAEVSARFSLD+MPGKQMSIDGD+RAGVID ++AR  R  +++ES+  G+
Sbjct  135  FIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGA  194

Query  188  MDGAMKFVKGDSIAglviiivnilggvtigvtQKGMSASEALELFAILTVGDGLVSQIPA  247
            MDGAMKFVKGD+IAG+++++VNI+GG+ I++ Q +MS SEA++ +++L++GDGL +QIP+
Sbjct  195  MDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPS  254

Query  248  LFIAITAGIIVTRVSHEDSADLGSDIGGQVTAQPRALLIGGVLLILFALIPGFPKITflv  307
            L+I+++AGIIVTRV+ E   +L++++++Q++ QP++L++ +V+L+L+ALIPGFP IT  +
Sbjct  255  LLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFIT--L  312

Query  308  lalvvggggfylfyQQKKQTESESSDLPSFVAQGAGSPAAKPNKPTPSRGSKGKLGEQEE  367
              +    +   ++ ++KK   S         A+G  +P   +  P +             
Sbjct  313  AFFSALLALPIILIRRKKSVVS---------ANGVEAPEKDSMVPGAC------------  351

Query  368  FAMTVPLLIDLDSSLQESLEAVALNDELARVRRALYLDLGVPFPGIHLR-FNDGMKNGEY  426
                 PL++ L ++L+ +     L  ++  +R+ L+ D GVP+P +++  + +   +   
Sbjct  352  -----PLILRLSPTLHSA----DLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTV  402

Query  427  LIQLQEVPVARGRIEKDKLLVTEGSDQIELLGVPFEQDDDFLP-GVSSL-WVAQSYQEKL  484
            L+  + V       + D LL+  ++  +         D + LP G++ + W+++   +K 
Sbjct  403  LLYQEPVFSLSIPAQADYLLIGADASVVG--------DSQTLPNGMGQICWLTKDMAHKA  454

Query  485  TASHVG-FLTPDRILTFHLSHVLKEYAQDFIGIQETRYLLEQMEGSYSELVKEAQRIVPL  543
             +  ++ F  ++RI ++ L  VL     +FIG+QETRYL++ ME +YSELVKE QR +P+
Sbjct  455  QGFGLDVFAGSQRISAL-LKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQRQLPI  513

Query  544  QKMTEILQRLVSEDISIRNLRVILEAMVEWGQKEKDVVQLTEYIRSSLKRYICYKYASGQ  603
            +K++E LQRLVSE +SIR+LR+I+ ++++W+ +EKDV+ LTEY+R +L+R I  +  +  
Sbjct  514  NKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLNPEG  573

Query  604  NMLPAYLLDQSLEDTIRSGIRQTSAGSYLALDPSVTQQFVSDVKQTVGDLSRMPNKPVLV  663
            + LP   +++++E+ +R +IRQT+ G+Y AL +    Q++  + Q++    + + K  +V
Sbjct  574  KPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQAL----KQSAKLFIV  629

Query  664  VSMDVRRYVRKLIESEYYDLPVLSFQELTQQINIQPLGRVGM  705
             S+D RR++RK+ E+  +D+P+LS QEL ++  IQ +  +++
Sbjct  630  TSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESIDL  671

103) M634_09155 in NC_021847


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  335 bits (1256),  Expect = 6e-93, Method: Compositional matrix adjust.
 Identities = 292/702 (42%), Positives = 487/702 (70%), Gaps = 49/702 (6%)

Query  8    LNKVGQRKDIMLAVMLLAIVFMMILPLPTALVDVLIGANMSIAVVLLMLAIYITTPLEFS  67
            L+  + R+D++LA +LL  + MM+LPLPT +VD+LI  N+ ++V+LL++AIY++ PL++S
Sbjct  15   LSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLS  74

Query  68   AFPAVllittlfrlslsitttrlillQGDAGQIVYtfgnfvvggnlvvgivvfliitivQ  127
             FP++LLITTL+RLSL+I+T+RL+LLQ +AG+IV +FG+FVVGGNL VG+VVF IITIVQ
Sbjct  75   VFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQ  134

Query  128  FMVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVHEARHRRSLIEKESQMYGS  187
            F+VITKG ERVAEVSARFSLD+MPGKQMSIDGD+RAGVID ++AR  R  +++ES+  G+
Sbjct  135  FIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGA  194

Query  188  MDGAMKFVKGDSIAglviiivnilggvtigvtQKGMSASEALELFAILTVGDGLVSQIPA  247
            MDGAMKFVKGD+IAG+++++VNI+GG+ I++ Q +MS SEA++ +++L++GDGL +QIP+
Sbjct  195  MDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPS  254

Query  248  LFIAITAGIIVTRVSHEDSADLGSDIGGQVTAQPRALLIGGVLLVLFALIPGFPKITflv  307
            L+I+++AGIIVTRV+ E   +L++++++Q++ QP++L++ +V+L+L+ALIPGFP IT  +
Sbjct  255  LLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFIT--L  312

Query  308  lalvvggggfylfyQQKKQTESESSDLPSFVAQGAGSPAAKPNKPTPSRGSKGKLGEQEE  367
              +    +   ++ ++KK   S         A+G  +P   +  P +             
Sbjct  313  AFFSALLALPIILIRRKKSVVS---------ANGVEAPEKDSMVPGAC------------  351

Query  368  FAMTVPLLIDLDSSLQESLEAVALNDELARVRRALYLDLGVPFPGIHLR-FNDGMKNGEY  426
                 PL++ L ++L+ +     L  ++  +R+ L+ D GVP+P +++  + +   +   
Sbjct  352  -----PLILRLSPTLHSA----DLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTV  402

Query  427  LIQLQEVPVARGRIEKDKLLVTEGSDQIELLGVPFEQDDDFLP-GVSSL-WVAQSYQEKL  484
            L+  + V       + D LL+  ++  +         D + LP G++ + W+++   +K 
Sbjct  403  LLYQEPVFSLSIPAQADYLLIGADASVVG--------DSQTLPNGMGQICWLTKDMAHKA  454

Query  485  TASHVG-FLTPDRILTFHLSHVLKEYAQDFIGIQETRYLLEQMEGSYSELVKEAQRIVPL  543
             +  ++ F  ++RI ++ L  VL     +FIG+QETRYL++ ME +YSELVKE QR +P+
Sbjct  455  QGFGLDVFAGSQRISAL-LKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQRQLPI  513

Query  544  QKMTEILQRLVSEDISIRNLRVILEAMVEWGQKEKDVVQLTEYIRSSLKRYICYKYASGH  603
            +K++E LQRLVSE +SIR+LR+I+ ++++W+ +EKDV+ LTEY+R +L+R I  +  +  
Sbjct  514  NKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLNPEG  573

Query  604  NMLPAYLLDQSLEDTIRSGIRQTSAGSYLALDPSVTQQFVSDVKQTVGDLSRMPNKPVLV  663
            + LP   +++++E+ +R +IRQT+ G+Y AL +    Q++  + Q++    + + K  +V
Sbjct  574  KPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQAL----KQSAKLFIV  629

Query  664  VSMDVRRYVRKLIESEYYDLPVLSFQELTQQINIQPLGRVGM  705
             S+D RR++RK+ E+  +D+P+LS QEL ++  IQ +  +++
Sbjct  630  TSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESIDL  671

104) VP1662 in NC_004603


> Y09357|5|G5|1669749|CAA70536.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|+|3573..5618|ssaV|-|secretion 
system apparatus
Length=681

 Score =  335 bits (1256),  Expect = 6e-93, Method: Compositional matrix adjust.
 Identities = 292/702 (42%), Positives = 487/702 (70%), Gaps = 49/702 (6%)

Query  11   LNKVGQRKDIMLAVMLLAIVFMMILPLPTALVDVLIGANMSIAVVLLMLAIYITTPLEFS  70
            L+  + R+D++LA +LL  + MM+LPLPT +VD+LI  N+ ++V+LL++AIY++ PL++S
Sbjct  15   LSVCAGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLS  74

Query  71   AFPAVllittlfrlslsitttrlillQGDAGQIVYtfgnfvvggnlvvgivvfliitivQ  130
             FP++LLITTL+RLSL+I+T+RL+LLQ +AG+IV +FG+FVVGGNL VG+VVF IITIVQ
Sbjct  75   VFPSLLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQ  134

Query  131  FMVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVHEARHRRSLIEKESQMYGS  190
            F+VITKG ERVAEVSARFSLD+MPGKQMSIDGD+RAGVID ++AR  R  +++ES+  G+
Sbjct  135  FIVITKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGA  194

Query  191  MDGAMKFVKGDSIAglviiivnilggvtigvtQKGMSASEALELFAILTVGDGLVSQIPA  250
            MDGAMKFVKGD+IAG+++++VNI+GG+ I++ Q +MS SEA++ +++L++GDGL +QIP+
Sbjct  195  MDGAMKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPS  254

Query  251  LFIAITAGIIVTRVSHEDSADLGSDIGGQVTAQPRALLIGGVLLVLFALIPGFPKITflv  310
            L+I+++AGIIVTRV+ E   +L++++++Q++ QP++L++ +V+L+L+ALIPGFP IT  +
Sbjct  255  LLISLSAGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFIT--L  312

Query  311  lalvvggggfylfyQQKKQTESESSDLPSFVAQGAGSPAAKPNKPTPSRGSKGKLGEQEE  370
              +    +   ++ ++KK   S         A+G  +P   +  P +             
Sbjct  313  AFFSALLALPIILIRRKKSVVS---------ANGVEAPEKDSMVPGAC------------  351

Query  371  FAMTVPLLIDLDSSLQESLEAVALNDELARVRRALYLDLGVPFPGIHLR-FNDGMKNGEY  429
                 PL++ L ++L+ +     L  ++  +R+ L+ D GVP+P +++  + +   +   
Sbjct  352  -----PLILRLSPTLHSA----DLIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTV  402

Query  430  LIQLQEVPVARGRIEKDKLLVTEGSDQIELLGVPFEQDDDFLP-GVSSL-WVAQSYQEKL  487
            L+  + V       + D LL+  ++  +         D + LP G++ + W+++   +K 
Sbjct  403  LLYQEPVFSLSIPAQADYLLIGADASVVG--------DSQTLPNGMGQICWLTKDMAHKA  454

Query  488  TASHVG-FLTPDRILTFHLSHVLKEYAQDFIGIQETRYLLEQMEGSYSELVKEAQRIVPL  546
             +  ++ F  ++RI ++ L  VL     +FIG+QETRYL++ ME +YSELVKE QR +P+
Sbjct  455  QGFGLDVFAGSQRISAL-LKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQRQLPI  513

Query  547  QKMTEILQRLVSEDISIRNLRVILEAMVEWGQKEKDVVQLTEYIRSSLKRYICYKYASGQ  606
            +K++E LQRLVSE +SIR+LR+I+ ++++W+ +EKDV+ LTEY+R +L+R I  +  +  
Sbjct  514  NKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLNPEG  573

Query  607  NMLPAYLLDQSLEDTIRSGIRQTSAGSYLALDPSVTQQFVSDVKQTVGDLSRMPNKPVLV  666
            + LP   +++++E+ +R +IRQT+ G+Y AL +    Q++  + Q++    + + K  +V
Sbjct  574  KPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQAL----KQSAKLFIV  629

Query  667  VSMDVRRYVRKLIESEYYDLPVLSFQELTQQINIQPLGRVGM  708
             S+D RR++RK+ E+  +D+P+LS QEL ++  IQ +  +++
Sbjct  630  TSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESIDL  671