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PAthogenisity Island DataBase (PAI DB)

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Homologs of SSU98_0912 gene of NC_009443_P1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) SSU98_0912
( YP_001200470.1 )

NisR

NC_009443
(Streptococcus suis 98HAH33)

1e-66

100

2) SSU05_0907
( YP_001198273.1 )

NisR

NC_009442
(Streptococcus suis 05ZYH33)

8e-64

3) SSUBM407_0999
( YP_003028741.1 )

response regulator protein

NC_012926
(Streptococcus suis BM407)

8e-64

4) SSUSC84_0811
( YP_003024825.1 )

response regulator protein

NC_012924
(Streptococcus suis SC84)

8e-64

5) SP70585_1290
( YP_002740532.1 )

NisR

NC_012468
(Streptococcus pneumoniae 70585)

5e-60

6) nisR
( YP_006309898.1 )

NisR

NC_017905
(Streptococcus parasanguinis FW213)

4e-37

7) nisR
( YP_006069693.1 )

nisin biosynthesis regulatory protein nisR

NC_017595
(Streptococcus salivarius JIM8777)

3e-35

8) KE3_1030
( YP_008356328.1 )

two-component response regulator

NC_021900
(Streptococcus lutetiensis 033)

9e-29

9) CLJU_c22950
( YP_003780455.1 )

two-component response regulator

NC_014328
(Clostridium ljungdahlii ATCC 49587)

4e-26

10) CLB_1605
( YP_001383928.1 )

antibiotic transporter response regulator

NC_009697
(Clostridium botulinum ATCC 19397)

5e-26

11) CBO1585
( YP_001254092.1 )

antibiotic ABC transporter

NC_009495
(Clostridium botulinum ATCC 3502)

5e-26

12) CLC_1615
( YP_001387474.1 )

antibiotic transporter response regulator

NC_009698
(Clostridium botulinum Hall)

5e-26

13) CLD_2967
( YP_001781221.1 )

antibiotic transporter response regulator

NC_010516
(Clostridium botulinum Okra)

5e-26

14) CBF_1648
( YP_005674568.1 )

putative antibiotic transporter response regulator

NC_017297
(Clostridium botulinum 230613)

1e-25

15) H04402_01654
( YP_005678202.1 )

response regulator

NC_017299
(Clostridium botulinum H04402 065)

1e-25

16) CLI_1666
( YP_001390928.1 )

antibiotic transporter response regulator

NC_009699
(Clostridium botulinum Langeland)

1e-25

17) CLK_1052
( YP_001786994.1 )

antibiotic transporter response regulator

NC_010520
(Clostridium botulinum Loch Maree)

1e-25

18) CLJU_c09170
( YP_003779087.1 )

two-component response regulator

NC_014328
(Clostridium ljungdahlii ATCC 49587)

3e-23

19) ELI_2590
( YP_003960535.1 )

two component transcriptional regulator

NC_014624
(Eubacterium limosum KIST612)

3e-23

20) spaR
( YP_003867648.1 )

Subtilin biosynthesis regulatory protein spaR

NC_014479
(Bacillus subtilis W23)

7e-23

21) GYO_3688
( YP_004878895.1 )

subtilin biosynthesis regulatory protein SpaR

NC_016047
(Bacillus subtilis TU-B-10)

1e-22

22) CK5_35880
( YP_007806734.1 )

Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

NC_021022
([Ruminococcus] obeum A2-162)

2e-22

23) Clocl_0453
( YP_005045101.1 )

response regulator with CheY-like receiver domain and winged-helix DNA-binding domain

NC_016627
(Clostridium clariflavum DSM 19732)

3e-19

24) Sterm_2324
( YP_003309109.1 )

two component transcriptional regulator, winged helix family

NC_013517
(Sebaldella termitidis ATCC 33386)

9e-18

25) Curi_c22940
( YP_006789143.1 )

two-component response regulator

NC_018664
(Clostridium acidurici 9a)

4e-16

26) RBR_13800
( YP_007781407.1 )

Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

NC_021013
(Ruminococcus bromii L2-63)

1e-13

27) BMWSH_1548
( YP_005493739.1 )

transcriptional regulatory protein ycbL

NC_017138
(Bacillus megaterium WSH-002)

4e-13

28) AM1_6069
( YP_001520320.1 )

response regulator receiver domain-containing protein

NC_009925
(Acaryochloris marina MBIC11017)

1e-12

• Sequence Alignments

1) SSU98_0912 in NC_009443


> NC_009443_P1|5|G5|146320759|YP_001200470.1|Streptococcus_suis_98HAH33|-|3546..4043|-|SSU98_0912|NisR
Length=165

 Score =  245 bits (915),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 165/165 (100%), Positives = 165/165 (100%), Gaps = 0/165 (0%)

Query  1    MKEKKIYQILAIDDDESILRLIKNSLERSEFEVTTRKEVGNIDICSFVGFDLILLDIMMS  60
            MKEKKIYQILAIDDDESILRLIKNSLERSEFEVTTRKEVGNIDICSFVGFDLILLDIMMS
Sbjct  1    MKEKKIYQILAIDDDESILRLIKNSLERSEFEVTTRKEVGNIDICSFVGFDLILLDIMMS  60

Query  61   IDGLEICKSIREQIDVPIIFVTAKQLDSDLARGVKAGADDYIKKPFSITELVARVRMHIQ  120
            IDGLEICKSIREQIDVPIIFVTAKQLDSDLARGVKAGADDYIKKPFSITELVARVRMHIQ
Sbjct  61   IDGLEICKSIREQIDVPIIFVTAKQLDSDLARGVKAGADDYIKKPFSITELVARVRMHIQ  120

Query  121  REERNRKNNKEICTKKMIINASKQeilieeeiiSLTKRELQFCIL  165
            REERNRKNNKEICTKKMIINASKQEILIEEEIISLTKRELQFCIL
Sbjct  121  REERNRKNNKEICTKKMIINASKQEILIEEEIISLTKRELQFCIL  165

2) SSU05_0907 in NC_009442


> NC_009443_P1|5|G5|146320759|YP_001200470.1|Streptococcus_suis_98HAH33|-|3546..4043|-|SSU98_0912|NisR
Length=165

 Score =  236 bits (880),  Expect = 8e-64, Method: Compositional matrix adjust.
 Identities = 162/165 (99%), Positives = 162/165 (99%), Gaps = 2/165 (1%)

Query  1    MKEKKIYQILAIDDDESILRLIKNSLERSEFEVTTRKEVGNIDICSFVGFDLILLDIMMS  60
            MKEKKIYQILAIDDDESILRLIKNSLERSEFEVTTRKEVGNIDICSFVGFDLILLDIMMS
Sbjct  1    MKEKKIYQILAIDDDESILRLIKNSLERSEFEVTTRKEVGNIDICSFVGFDLILLDIMMS  60

Query  61   IDGLEICKSIREQIDVPIIFVTAKQLDSDLARGVKAGADDYIKKPFSITELVARVRMHIQ  120
            IDGLEICKSIREQIDVPIIFVTAKQLDSDLARGVKAGADDYIKKPFSITELVARVRMHIQ
Sbjct  61   IDGLEICKSIREQIDVPIIFVTAKQLDSDLARGVKAGADDYIKKPFSITELVARVRMHIQ  120

Query  121  REERNRKNNKEICTKKMIINASKQeilieeeiiSLTKRE--FTIL  163
            REERNRKNNKEICTKKMIINASKQEILIEEEIISLTKRE  F IL
Sbjct  121  REERNRKNNKEICTKKMIINASKQEILIEEEIISLTKRELQFCIL  165

3) SSUBM407_0999 in NC_012926


> NC_009443_P1|5|G5|146320759|YP_001200470.1|Streptococcus_suis_98HAH33|-|3546..4043|-|SSU98_0912|NisR
Length=165

 Score =  236 bits (880),  Expect = 8e-64, Method: Compositional matrix adjust.
 Identities = 162/165 (99%), Positives = 162/165 (99%), Gaps = 2/165 (1%)

Query  1    MKEKKIYQILAIDDDESILRLIKNSLERSEFEVTTRKEVGNIDICSFVGFDLILLDIMMS  60
            MKEKKIYQILAIDDDESILRLIKNSLERSEFEVTTRKEVGNIDICSFVGFDLILLDIMMS
Sbjct  1    MKEKKIYQILAIDDDESILRLIKNSLERSEFEVTTRKEVGNIDICSFVGFDLILLDIMMS  60

Query  61   IDGLEICKSIREQIDVPIIFVTAKQLDSDLARGVKAGADDYIKKPFSITELVARVRMHIQ  120
            IDGLEICKSIREQIDVPIIFVTAKQLDSDLARGVKAGADDYIKKPFSITELVARVRMHIQ
Sbjct  61   IDGLEICKSIREQIDVPIIFVTAKQLDSDLARGVKAGADDYIKKPFSITELVARVRMHIQ  120

Query  121  REERNRKNNKEICTKKMIINASKQeilieeeiiSLTKRE--FTIL  163
            REERNRKNNKEICTKKMIINASKQEILIEEEIISLTKRE  F IL
Sbjct  121  REERNRKNNKEICTKKMIINASKQEILIEEEIISLTKRELQFCIL  165

4) SSUSC84_0811 in NC_012924


> NC_009443_P1|5|G5|146320759|YP_001200470.1|Streptococcus_suis_98HAH33|-|3546..4043|-|SSU98_0912|NisR
Length=165

 Score =  236 bits (880),  Expect = 8e-64, Method: Compositional matrix adjust.
 Identities = 162/165 (99%), Positives = 162/165 (99%), Gaps = 2/165 (1%)

Query  1    MKEKKIYQILAIDDDESILRLIKNSLERSEFEVTTRKEVGNIDICSFVGFDLILLDIMMS  60
            MKEKKIYQILAIDDDESILRLIKNSLERSEFEVTTRKEVGNIDICSFVGFDLILLDIMMS
Sbjct  1    MKEKKIYQILAIDDDESILRLIKNSLERSEFEVTTRKEVGNIDICSFVGFDLILLDIMMS  60

Query  61   IDGLEICKSIREQIDVPIIFVTAKQLDSDLARGVKAGADDYIKKPFSITELVARVRMHIQ  120
            IDGLEICKSIREQIDVPIIFVTAKQLDSDLARGVKAGADDYIKKPFSITELVARVRMHIQ
Sbjct  61   IDGLEICKSIREQIDVPIIFVTAKQLDSDLARGVKAGADDYIKKPFSITELVARVRMHIQ  120

Query  121  REERNRKNNKEICTKKMIINASKQeilieeeiiSLTKRE--FTIL  163
            REERNRKNNKEICTKKMIINASKQEILIEEEIISLTKRE  F IL
Sbjct  121  REERNRKNNKEICTKKMIINASKQEILIEEEIISLTKRELQFCIL  165

5) SP70585_1290 in NC_012468


> NC_009443_P1|5|G5|146320759|YP_001200470.1|Streptococcus_suis_98HAH33|-|3546..4043|-|SSU98_0912|NisR
Length=165

 Score =  223 bits (832),  Expect = 5e-60, Method: Compositional matrix adjust.
 Identities = 153/165 (93%), Positives = 159/165 (97%), Gaps = 2/165 (1%)

Query  1    MKEKKVYQILAIDDDESILRLIKNSLERSEFEVTTRREVGNIDICSFIGFDLILLDIMMS  60
            MKEKK+YQILAIDDDESILRLIKNSLERSEFEVTTR+EVGNIDICSF+GFDLILLDIMMS
Sbjct  1    MKEKKIYQILAIDDDESILRLIKNSLERSEFEVTTRKEVGNIDICSFVGFDLILLDIMMS  60

Query  61   IDGLEICKSIREQIDVPIIFVTAKQLDSDLASGVKAGADDYIKKPFSITELVARVRMHIQ  120
            IDGLEICKSIREQIDVPIIFVTAKQLDSDLA GVKAGADDYIKKPFSITELVARVRMHIQ
Sbjct  61   IDGLEICKSIREQIDVPIIFVTAKQLDSDLARGVKAGADDYIKKPFSITELVARVRMHIQ  120

Query  121  REERNRKNNKEICTKNLIINVSNQeilieeetisltKRE--FTIL  163
            REERNRKNNKEICTK++IIN S+QEILIEEE ISLTKRE  F IL
Sbjct  121  REERNRKNNKEICTKKMIINASKQEILIEEEIISLTKRELQFCIL  165

6) nisR in NC_017905


> NC_009443_P1|5|G5|146320759|YP_001200470.1|Streptococcus_suis_98HAH33|-|3546..4043|-|SSU98_0912|NisR
Length=165

 Score =  147 bits (543),  Expect = 4e-37, Method: Compositional matrix adjust.
 Identities = 87/159 (55%), Positives = 122/159 (77%), Gaps = 0/159 (0%)

Query  3    YKVLVIDDDIAILRLIQNVLENKNFVVDTRTAIPEIDICHFIGYDLIILDIMMPHDGIEI  62
            Y++L IDDD +ILRLI+N LE  +F V TR  + +IDIC F+G+DLI+LDIMM+ DG+EI
Sbjct  7    YQILAIDDDESILRLIKNSLERSEFEVTTRKEVGNIDICSFVGFDLILLDIMMSIDGLEI  66

Query  63   CKYIREFISVPIIFLTSKNLEEDIVYGIQSGADDYITKPFSIPELVARVQMHIRREVRNN  122
            CK IRE I VPIIF+T+K+L+ D+  G+++GADDYI KPFSI ELVARV+MHI+RE RN 
Sbjct  67   CKSIREQIDVPIIFVTAKQLDSDLARGVKAGADDYIKKPFSITELVARVRMHIQREERNR  126

Query  123  HSSEILQFGPLAIDKTKEELRISDIHIPTTKREFQLILL  161
             ++  +    + I+ +K+E+ I +  I+ TKRE+Q+ +L
Sbjct  127  KNNKEICTKKMIINASKQEILIEEEIISLTKRELQFCIL  165

7) nisR in NC_017595


> NC_009443_P1|5|G5|146320759|YP_001200470.1|Streptococcus_suis_98HAH33|-|3546..4043|-|SSU98_0912|NisR
Length=165

 Score =  141 bits (519),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 86/159 (55%), Positives = 120/159 (76%), Gaps = 0/159 (0%)

Query  3    YKILVIDDDKSILRLVRNVLESKNFVVDTLTSIPDIDICHFIGYDLIILDIMMPHSGIEI  62
            Y+IL IDDD SILRL++N LE  +F V T   + +IDIC F+G+DLI+LDIMM+  G+EI
Sbjct  7    YQILAIDDDESILRLIKNSLERSEFEVTTRKEVGNIDICSFVGFDLILLDIMMSIDGLEI  66

Query  63   CRYIREFISVPIIFLTAKNLEEDVVCGIQSGADDYITKPFSIPELVARVQMHIRREVRNN  122
            C+ IRE I VPIIF+TAK+L+ D+  G+++GADDYI KPFSI ELVARV+MHI+RE RN 
Sbjct  67   CKSIREQIDVPIIFVTAKQLDSDLARGVKAGADDYIKKPFSITELVARVRMHIQREERNR  126

Query  123  NSNEILQFGPITINKIKEELRVADVHVPTTKREFQLILL  161
            ++N  +    + IN  K+E+ + +  ++ TKRE+Q+ +L
Sbjct  127  KNNKEICTKKMIINASKQEILIEEEIISLTKRELQFCIL  165

8) KE3_1030 in NC_021900


> NC_009443_P1|5|G5|146320759|YP_001200470.1|Streptococcus_suis_98HAH33|-|3546..4043|-|SSU98_0912|NisR
Length=165

 Score =  120 bits (437),  Expect = 9e-29, Method: Compositional matrix adjust.
 Identities = 66/130 (51%), Positives = 100/130 (77%), Gaps = 2/130 (1%)

Query  3    KVYKILVVDDDFEILKLMTNIFEMQNYAVTTYQVVNSPIDINDFMGFDLILLDVMMPNVD  62
            K+Y+IL +DDD  IL+L+ N +E  ++ VTT + V + IDI  F+GFDLILLD+MM+ +D
Sbjct  5    KIYQILAIDDDESILRLIKNSLERSEFEVTTRKEVGN-IDICSFVGFDLILLDIMMS-ID  62

Query  63   GMALCQEIRHRIATPIIFVSAKDSEEDIISGLKLGGDDYITKPFSIKQLVAKVEAHLKRE  122
            G+ +C+ IR++I  PIIFV+AK+ + D+  G+K G+DDYI KPFSI +LVA+V  H++RE
Sbjct  63   GLEICKSIREQIDVPIIFVTAKQLDSDLARGVKAGADDYIKKPFSITELVARVRMHIQRE  122

Query  123  ERLKQAKKDF  132
            ER ++ +K++
Sbjct  123  ERNRKNNKEI  132

9) CLJU_c22950 in NC_014328


> NC_009443_P1|5|G5|146320759|YP_001200470.1|Streptococcus_suis_98HAH33|-|3546..4043|-|SSU98_0912|NisR
Length=165

 Score =  111 bits (403),  Expect = 4e-26, Method: Compositional matrix adjust.
 Identities = 74/157 (48%), Positives = 115/157 (74%), Gaps = 2/157 (1%)

Query  3    KILAVDDDKRILKLIKNALELNHHEVITLQDPENIPIEEFCGYDLILLDVMMPEIDGFEL  62
            +ILA+DDD  IL+LIKN+LE ++ EV T ++  NI I  F G+DLILLD+MM+ IDG+E+
Sbjct  8    QILAIDDDESILRLIKNSLERSEFEVTTRKEVGNIDICSFVGFDLILLDIMMS-IDGLEI  66

Query  63   CQKIRSTVDSPIIFLTAKTDESSIVKGLAFGGDDYISKPFGVMELNARVEAYLRRENRGK  122
            C+ IR  +D PIIF+TAK  +S + +G+  G+DDYI KPF++ EL ARV   ++RE+R +
Sbjct  67   CKSIREQIDVPIIFVTAKQLDSDLARGVKAGADDYIKKPFSITELVARVRMHIQREERNR  126

Query  123  STKKLVYG-DITIDFDKKEILVNNNVIAFTKNEYNIC  158
              +K +    + I+  K+EIL+++++I++TK E ++C
Sbjct  127  KNNKEICTKKMIINASKQEILIEEEIISLTKRELQFC  163

10) CLB_1605 in NC_009697


> NC_009443_P1|5|G5|146320759|YP_001200470.1|Streptococcus_suis_98HAH33|-|3546..4043|-|SSU98_0912|NisR
Length=165

 Score =  110 bits (402),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 74/157 (48%), Positives = 112/157 (72%), Gaps = 3/157 (1%)

Query  3    KILVIDDEEDILALVKNVLSKDNHLVTTVKEAKDIPLNDFVKFDLILLDVMMPDIDGFTL  62
            +IL IDD+E IL L+KN L + +  VTT KE  +I +  FV FDLILLD+MM+ IDG+ +
Sbjct  8    QILAIDDDESILRLIKNSLERSEFEVTTRKEVGNIDICSFVGFDLILLDIMMS-IDGLEI  66

Query  63   CKEIREMVDCPILFLTAKTMESDIMFGLGIGGDDYITKPFGVGELRARVNAHLRREHREK  122
            CK IRE +D PI+F+TAK ++SD+  G+  G+DDYI KPF++ EL ARV  H++RE+R++
Sbjct  67   CKSIREQIDVPIIFVTAKQLDSDLARGVKAGADDYIKKPFSITELVARVRMHIQREERNR  126

Query  123  RHI--FVASDIIFNLSSKEIKIGDVKVAFTKGEYAIC  157
            ++   + +  +I+N S +EI I +  +++TK E  +C
Sbjct  127  KNNKEICTKKMIINASKQEILIEEEIISLTKRELQFC  163

11) CBO1585 in NC_009495


> NC_009443_P1|5|G5|146320759|YP_001200470.1|Streptococcus_suis_98HAH33|-|3546..4043|-|SSU98_0912|NisR
Length=165

 Score =  110 bits (402),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 74/157 (48%), Positives = 112/157 (72%), Gaps = 3/157 (1%)

Query  3    KILVIDDEEDILALVKNVLSKDNHLVTTVKEAKDIPLNDFVKFDLILLDVMMPDIDGFTL  62
            +IL IDD+E IL L+KN L + +  VTT KE  +I +  FV FDLILLD+MM+ IDG+ +
Sbjct  8    QILAIDDDESILRLIKNSLERSEFEVTTRKEVGNIDICSFVGFDLILLDIMMS-IDGLEI  66

Query  63   CKEIREMVDCPILFLTAKTMESDIMFGLGIGGDDYITKPFGVGELRARVNAHLRREHREK  122
            CK IRE +D PI+F+TAK ++SD+  G+  G+DDYI KPF++ EL ARV  H++RE+R++
Sbjct  67   CKSIREQIDVPIIFVTAKQLDSDLARGVKAGADDYIKKPFSITELVARVRMHIQREERNR  126

Query  123  RHI--FVASDIIFNLSSKEIKIGDVKVAFTKGEYAIC  157
            ++   + +  +I+N S +EI I +  +++TK E  +C
Sbjct  127  KNNKEICTKKMIINASKQEILIEEEIISLTKRELQFC  163

12) CLC_1615 in NC_009698


> NC_009443_P1|5|G5|146320759|YP_001200470.1|Streptococcus_suis_98HAH33|-|3546..4043|-|SSU98_0912|NisR
Length=165

 Score =  110 bits (402),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 74/157 (48%), Positives = 112/157 (72%), Gaps = 3/157 (1%)

Query  3    KILVIDDEEDILALVKNVLSKDNHLVTTVKEAKDIPLNDFVKFDLILLDVMMPDIDGFTL  62
            +IL IDD+E IL L+KN L + +  VTT KE  +I +  FV FDLILLD+MM+ IDG+ +
Sbjct  8    QILAIDDDESILRLIKNSLERSEFEVTTRKEVGNIDICSFVGFDLILLDIMMS-IDGLEI  66

Query  63   CKEIREMVDCPILFLTAKTMESDIMFGLGIGGDDYITKPFGVGELRARVNAHLRREHREK  122
            CK IRE +D PI+F+TAK ++SD+  G+  G+DDYI KPF++ EL ARV  H++RE+R++
Sbjct  67   CKSIREQIDVPIIFVTAKQLDSDLARGVKAGADDYIKKPFSITELVARVRMHIQREERNR  126

Query  123  RHI--FVASDIIFNLSSKEIKIGDVKVAFTKGEYAIC  157
            ++   + +  +I+N S +EI I +  +++TK E  +C
Sbjct  127  KNNKEICTKKMIINASKQEILIEEEIISLTKRELQFC  163

13) CLD_2967 in NC_010516


> NC_009443_P1|5|G5|146320759|YP_001200470.1|Streptococcus_suis_98HAH33|-|3546..4043|-|SSU98_0912|NisR
Length=165

 Score =  110 bits (402),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 74/157 (48%), Positives = 112/157 (72%), Gaps = 3/157 (1%)

Query  3    KILVIDDEEDILALVKNVLSKDNHLVTTVKEAKDIPLNDFVKFDLILLDVMMPDIDGFTL  62
            +IL IDD+E IL L+KN L + +  VTT KE  +I +  FV FDLILLD+MM+ IDG+ +
Sbjct  8    QILAIDDDESILRLIKNSLERSEFEVTTRKEVGNIDICSFVGFDLILLDIMMS-IDGLEI  66

Query  63   CKEIREMVDCPILFLTAKTMESDIMFGLGIGGDDYITKPFGVGELRARVNAHLRREHREK  122
            CK IRE +D PI+F+TAK ++SD+  G+  G+DDYI KPF++ EL ARV  H++RE+R++
Sbjct  67   CKSIREQIDVPIIFVTAKQLDSDLARGVKAGADDYIKKPFSITELVARVRMHIQREERNR  126

Query  123  RHI--FVASDIIFNLSSKEIKIGDVKVAFTKGEYAIC  157
            ++   + +  +I+N S +EI I +  +++TK E  +C
Sbjct  127  KNNKEICTKKMIINASKQEILIEEEIISLTKRELQFC  163

14) CLK_1052 in NC_010520


> NC_009443_P1|5|G5|146320759|YP_001200470.1|Streptococcus_suis_98HAH33|-|3546..4043|-|SSU98_0912|NisR
Length=165

 Score =  109 bits (396),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 73/157 (47%), Positives = 111/157 (71%), Gaps = 3/157 (1%)

Query  3    KILVIDDEEDILALVKNVLSKDNHLVTTVKKAKDIPLNDFVKFDLILLDVMMPDIDGFTL  62
            +IL IDD+E IL L+KN L + +  VTT K   +I +  FV FDLILLD+MM+ IDG+ +
Sbjct  8    QILAIDDDESILRLIKNSLERSEFEVTTRKEVGNIDICSFVGFDLILLDIMMS-IDGLEI  66

Query  63   CKEIREMVDCPILFLTAKTMESDIMFGLGIGGDDYITKPFGVGELRARVNAHLRREHREK  122
            CK IRE +D PI+F+TAK ++SD+  G+  G+DDYI KPF++ EL ARV  H++RE+R++
Sbjct  67   CKSIREQIDVPIIFVTAKQLDSDLARGVKAGADDYIKKPFSITELVARVRMHIQREERNR  126

Query  123  RHI--FVASDIIFNLSSKEIKIGDVKVAFTKGEYAIC  157
            ++   + +  +I+N S +EI I +  +++TK E  +C
Sbjct  127  KNNKEICTKKMIINASKQEILIEEEIISLTKRELQFC  163

15) CBF_1648 in NC_017297


> NC_009443_P1|5|G5|146320759|YP_001200470.1|Streptococcus_suis_98HAH33|-|3546..4043|-|SSU98_0912|NisR
Length=165

 Score =  109 bits (396),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 73/157 (47%), Positives = 111/157 (71%), Gaps = 3/157 (1%)

Query  3    KILVIDDEEDILALVKNVLSKDNHLVTTVKKAKDIPLNDFVKFDLILLDVMMPDIDGFTL  62
            +IL IDD+E IL L+KN L + +  VTT K   +I +  FV FDLILLD+MM+ IDG+ +
Sbjct  8    QILAIDDDESILRLIKNSLERSEFEVTTRKEVGNIDICSFVGFDLILLDIMMS-IDGLEI  66

Query  63   CKEIREMVDCPILFLTAKTMESDIMFGLGIGGDDYITKPFGVGELRARVNAHLRREHREK  122
            CK IRE +D PI+F+TAK ++SD+  G+  G+DDYI KPF++ EL ARV  H++RE+R++
Sbjct  67   CKSIREQIDVPIIFVTAKQLDSDLARGVKAGADDYIKKPFSITELVARVRMHIQREERNR  126

Query  123  RHI--FVASDIIFNLSSKEIKIGDVKVAFTKGEYAIC  157
            ++   + +  +I+N S +EI I +  +++TK E  +C
Sbjct  127  KNNKEICTKKMIINASKQEILIEEEIISLTKRELQFC  163

16) CLI_1666 in NC_009699


> NC_009443_P1|5|G5|146320759|YP_001200470.1|Streptococcus_suis_98HAH33|-|3546..4043|-|SSU98_0912|NisR
Length=165

 Score =  109 bits (396),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 73/157 (47%), Positives = 111/157 (71%), Gaps = 3/157 (1%)

Query  3    KILVIDDEEDILALVKNVLSKDNHLVTTVKKAKDIPLNDFVKFDLILLDVMMPDIDGFTL  62
            +IL IDD+E IL L+KN L + +  VTT K   +I +  FV FDLILLD+MM+ IDG+ +
Sbjct  8    QILAIDDDESILRLIKNSLERSEFEVTTRKEVGNIDICSFVGFDLILLDIMMS-IDGLEI  66

Query  63   CKEIREMVDCPILFLTAKTMESDIMFGLGIGGDDYITKPFGVGELRARVNAHLRREHREK  122
            CK IRE +D PI+F+TAK ++SD+  G+  G+DDYI KPF++ EL ARV  H++RE+R++
Sbjct  67   CKSIREQIDVPIIFVTAKQLDSDLARGVKAGADDYIKKPFSITELVARVRMHIQREERNR  126

Query  123  RHI--FVASDIIFNLSSKEIKIGDVKVAFTKGEYAIC  157
            ++   + +  +I+N S +EI I +  +++TK E  +C
Sbjct  127  KNNKEICTKKMIINASKQEILIEEEIISLTKRELQFC  163

17) H04402_01654 in NC_017299


> NC_009443_P1|5|G5|146320759|YP_001200470.1|Streptococcus_suis_98HAH33|-|3546..4043|-|SSU98_0912|NisR
Length=165

 Score =  109 bits (396),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 73/157 (47%), Positives = 111/157 (71%), Gaps = 3/157 (1%)

Query  3    KILVIDDEEDILALVKNVLSKDNHLVTTVKKAKDIPLNDFVKFDLILLDVMMPDIDGFTL  62
            +IL IDD+E IL L+KN L + +  VTT K   +I +  FV FDLILLD+MM+ IDG+ +
Sbjct  8    QILAIDDDESILRLIKNSLERSEFEVTTRKEVGNIDICSFVGFDLILLDIMMS-IDGLEI  66

Query  63   CKEIREMVDCPILFLTAKTMESDIMFGLGIGGDDYITKPFGVGELRARVNAHLRREHREK  122
            CK IRE +D PI+F+TAK ++SD+  G+  G+DDYI KPF++ EL ARV  H++RE+R++
Sbjct  67   CKSIREQIDVPIIFVTAKQLDSDLARGVKAGADDYIKKPFSITELVARVRMHIQREERNR  126

Query  123  RHI--FVASDIIFNLSSKEIKIGDVKVAFTKGEYAIC  157
            ++   + +  +I+N S +EI I +  +++TK E  +C
Sbjct  127  KNNKEICTKKMIINASKQEILIEEEIISLTKRELQFC  163

18) CLJU_c09170 in NC_014328


> NC_009443_P1|5|G5|146320759|YP_001200470.1|Streptococcus_suis_98HAH33|-|3546..4043|-|SSU98_0912|NisR
Length=165

 Score =  101 bits (366),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 70/157 (45%), Positives = 107/157 (69%), Gaps = 3/157 (1%)

Query  3    KILVIDDEEDILVLVKNVLAKDGHVVTIINNPKKILLNEYAKYDLILLDVMMPDIDGFEL  62
            +IL IDD+E IL L+KN L +    VT  ++  +I +  +  +DLILLD+MM+ IDG+E+
Sbjct  8    QILAIDDDESILRLIKNSLERSEFEVTTRKEVGNIDICSFVGFDLILLDIMMS-IDGLEI  66

Query  63   CEKIRDIVDCPILFLTAKTMENDVMFGLGIGGDDYIKKPFSTGELRARVNAHLRREKREK  122
            C  IR+ +D PI+F+TAK +++D+  G+  G+DDYIKKPFS  EL ARV  H++RE R++
Sbjct  67   CKSIREQIDVPIIFVTAKQLDSDLARGVKAGADDYIKKPFSITELVARVRMHIQREERNR  126

Query  123  HNMISISGMK--FNLASKEIIIEDKKVPMTKSEYAIC  157
             N   I   K  +N + +EI+IE+  +++TK E  +C
Sbjct  127  KNNKEICTKKMIINASKQEILIEEEIISLTKRELQFC  163

19) ELI_2590 in NC_014624


> NC_009443_P1|5|G5|146320759|YP_001200470.1|Streptococcus_suis_98HAH33|-|3546..4043|-|SSU98_0912|NisR
Length=165

 Score =  101 bits (366),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 64/157 (41%), Positives = 109/157 (70%), Gaps = 3/157 (1%)

Query  3    RILAVDDEKGILNLVKRVLEKDGHQVRTLSDPAALSMNGLEAFDLILLDVMMPGTDGFTL  62
            +ILA+DD+ +IL L+K  LE+   +V T  + + + + ++ +FDLILLD+MM + DG+ +
Sbjct  8    QILAIDDDESILRLIKNSLERSEFEVTTRKEVGNIDICSFVGFDLILLDIMM-SIDGLEI  66

Query  63   CRKIRENVDCPILFLTAKTMEKDIMYGLGIGGDDYITKPFGNGELRARVAAHLRREKREK  122
            C+ IRE++D PI+F+TAK ++ D+  G+  G+DDYI KPF+  EL ARV  H++RE R++
Sbjct  67   CKSIREQIDVPIIFVTAKQLDSDLARGVKAGADDYIKKPFSITELVARVRMHIQREERNR  126

Query  123  RSV--LSLDGIRFNLGAHEMIIGEQKVSLTKSEYAIC  157
            ++   +    + +N + +E++I E+ +SLTK E  +C
Sbjct  127  KNNKEICTKKMIINASKQEILIEEEIISLTKRELQFC  163

20) spaR in NC_014479


> NC_009443_P1|5|G5|146320759|YP_001200470.1|Streptococcus_suis_98HAH33|-|3546..4043|-|SSU98_0912|NisR
Length=165

 Score =  100 bits (362),  Expect = 7e-23, Method: Compositional matrix adjust.
 Identities = 66/156 (43%), Positives = 108/156 (70%), Gaps = 2/156 (1%)

Query  4    ILAVDDEKDILVLIQNILRRDQHQVDILDHVHGQPPDVFQGYDLILLDVMMPDIDGFELC  63
            ILA+DD+  IL LI+N L R + +V    +V       F G+DLILLD+MM+ IDG+E+C
Sbjct  9    ILAIDDDESILRLIKNSLERSEFEVTTRKEVGNIDICSFVGFDLILLDIMMS-IDGLEIC  67

Query  64   KQIRPLVDCPILFLTAKTEEEAIVKGLITGGDDYITKPFGVRELSARVNAHLRRERRDKH  123
            K IR  +D PI+F+TAK  +  + +G+ +G+DDYI KPF++ EL ARV  H++RE R++ 
Sbjct  68   KSIREQIDVPIIFVTAKQLDSDLARGVKAGADDYIKKPFSITELVARVRMHIQREERNRK  127

Query  124  QSKRVISGFLFHFDSKE-VFINNNKLNLTKNEYKIC  158
            ++K + +  ++   SK+ ++I+++ ++LTK E ++C
Sbjct  128  NNKEICTKKMIINASKQEILIEEEIISLTKRELQFC  163

21) GYO_3688 in NC_016047


> NC_009443_P1|5|G5|146320759|YP_001200470.1|Streptococcus_suis_98HAH33|-|3546..4043|-|SSU98_0912|NisR
Length=165

 Score = 99.6 bits (359),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 67/157 (43%), Positives = 109/157 (70%), Gaps = 2/157 (1%)

Query  3    KILAVDDEKDILVLIQNILRRDQHQVDTLDRVKGQPPDLFQGYDLILLDVMMPDIDGFEL  62
            +ILA+DD+  IL LI+N L R + +V T   V       F G+DLILLD+MM+ IDG+E+
Sbjct  8    QILAIDDDESILRLIKNSLERSEFEVTTRKEVGNIDICSFVGFDLILLDIMMS-IDGLEI  66

Query  63   CKQIRPLVDCPILFLTAKTEEEAIVKGLITGGDDYITKPFGVRELSARVNAHLRRERRDK  122
            CK IR  +D PI+F+TAK  +  + +G+ +G+DDYI KPF++ EL ARV  H++RE R++
Sbjct  67   CKSIREQIDVPIIFVTAKQLDSDLARGVKAGADDYIKKPFSITELVARVRMHIQREERNR  126

Query  123  HQSKRVISGFLFHFDSKE-VFINNNKLNLTKNEYKIC  158
             ++K + +  ++   SK+ ++I+++ ++LTK E ++C
Sbjct  127  KNNKEICTKKMIINASKQEILIEEEIISLTKRELQFC  163

22) CK5_35880 in NC_021022


> NC_009443_P1|5|G5|146320759|YP_001200470.1|Streptococcus_suis_98HAH33|-|3546..4043|-|SSU98_0912|NisR
Length=165

 Score = 99.4 bits (358),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 68/157 (44%), Positives = 108/157 (69%), Gaps = 3/157 (1%)

Query  3    NILVIDDDEKILELVQEVLKNEHYIVETRSYVDNTNIGEFEGFDLILLDIMLPFLDGYEI  62
            +IL IDDDE IL L+++ L   ++ V TR  V+N +I  F GFDLILLDIM++ +DG EI
Sbjct  8    QILAIDDDESILRLIKNSLERSEFEVTTRKEVGNIDICSFVGFDLILLDIMMS-IDGLEI  66

Query  63   LERIKNIITCPVIFLSAKSSEGAKVKGLMSGADDYITKPFSIRELVARVKVALRRNLKN-  121
               I++ I  P+IF++AK  ++   +G+ +GADDYI KPFSI ELVARV++ ++R+ +N 
Sbjct  67   CKSIREQIDVPIIFVTAKQLDSDLARGVKAGADDYIKKPFSITELVARVRMHIQREERNR  126

Query  122  -GSNGILINGLVFNQDSNSIKLDNGEILLTKNEFRIC  157
              ++ I  + +++N   + I +++  I LTK E+++C
Sbjct  127  KNNKEICTKKMIINASKQEILIEEEIISLTKRELQFC  163

23) Clocl_0453 in NC_016627


> NC_009443_P1|5|G5|146320759|YP_001200470.1|Streptococcus_suis_98HAH33|-|3546..4043|-|SSU98_0912|NisR
Length=165

 Score = 88.4 bits (316),  Expect = 3e-19, Method: Compositional matrix adjust.
 Identities = 65/162 (41%), Positives = 109/162 (68%), Gaps = 8/162 (4%)

Query  4    RILIIEDEVSIAELQRDYLEINGYDVDIEK-TGDKGLARALKEDFDLIILDLMLPNIDGF  62
            +IL I+D+ SI  L ++ LE + ++V   K  G+ ++   +  +FDLI+LD+M++ IDG+
Sbjct  8    QILAIDDDESILRLIKNSLERSEFEVTTRKEVGNIDICSFV--GFDLILLDIMMS-IDGL  64

Query  63   EICRRLRESKNIPILMVSARKEDIDKIRGLGLGADDYITKPFSPNELVARVTAHISRYER  122
            EIC+ +RE  ++PI+ V+A++ D D  RG+  GADDYI KPFS  ELVARV  HI R ER
Sbjct  65   EICKSIREQIDVPIIFVTAKQLDSDLARGVKAGADDYIKKPFSITELVARVRMHIQREER  124

Query  123  LVGSNEKKSKTIAVRNLVIDKDARRVWVEGQEVTLTTKEFDL  164
                N K++K I  ++++I+   + + +E + ++LT +E+++
Sbjct  125  ----NRKNNKEICTKKMIINASKQEILIEEEIISLTKRELQF  162

24) Sterm_2324 in NC_013517


> NC_009443_P1|5|G5|146320759|YP_001200470.1|Streptococcus_suis_98HAH33|-|3546..4043|-|SSU98_0912|NisR
Length=165

 Score = 83.6 bits (298),  Expect = 9e-18, Method: Compositional matrix adjust.
 Identities = 69/163 (43%), Positives = 106/163 (66%), Gaps = 7/163 (4%)

Query  1    MKEK----ILIIEDDPKISRLIEIELKFEGFEVSFAYDGKEGLNSAKYNSYDLIILDLML  56
            MKEK    IL I+DD  I RLI   L    FEV+ +      ++   + ++DLI+LD+M+
Sbjct  1    MKEKKIYQILAIDDDESILRLIKNSLERSEFEVT-TRKEVGNIDICSFVGFDLILLDIMM  59

Query  57   PKMNGIEVCKRIREFSEVPIIMLTAKDEISDKVVGLDYGADDYMTKPFSNEELIARIKAL  116
            + ++G+E+CK IRE  +VPII +TAK+  SD   G+  GADDY+ KPFS  EL+AR++  
Sbjct  60   S-IDGLEICKSIREQIDVPIIFVTAKQLDSDLARGVKAGADDYIKKPFSITELVARVRMH  118

Query  117  IRR-TKKRNNQEEFVYEDLKINYSTYEVFRGETLISLSKREFE  158
            I+R  ++R+N+ E+    + IN S  E++  E +ISL+KRE++
Sbjct  119  IQREERNRKNNKEICTKKMIINASKQEILIEEEIISLTKRELQ  161

25) Curi_c22940 in NC_018664


> NC_009443_P1|5|G5|146320759|YP_001200470.1|Streptococcus_suis_98HAH33|-|3546..4043|-|SSU98_0912|NisR
Length=165

 Score = 78.1 bits (277),  Expect = 4e-16, Method: Compositional matrix adjust.
 Identities = 55/134 (42%), Positives = 88/134 (66%), Gaps = 8/134 (5%)

Query  1    MKEK----ILVVEDDIEIAFAIKEFLAKKRYAIT-WTSTGKEGLEEFQKNKYDLVIVDIM  55
            MKEK    IL ++DD  I   IK+ L +  + +T +   G+ ++  F    +DL+++DIM
Sbjct  1    MKEKKIYQILAIDDDESILRLIKNSLERSEFEVTTRKEVGNIDICSF--VGFDLILLDIM  58

Query  56   MPEMDGFTLCKNIRMKSDIPILIMSAKSQEKDKVKGLNIGADDYITKPFSLVELEARIDS  115
            M+ +DG+ +CK+IR + D+PI++++AK  + D  +G++ GADDYI KPFS+ EL AR+  
Sbjct  59   MS-IDGLEICKSIREQIDVPIIFVTAKQLDSDLARGVKAGADDYIKKPFSITELVARVRM  117

Query  116  HIRRYKRYLGENKE  129
            HI+R  R   +NKE
Sbjct  118  HIQREERNRKNNKE  131

26) RBR_13800 in NC_021013


> NC_009443_P1|5|G5|146320759|YP_001200470.1|Streptococcus_suis_98HAH33|-|3546..4043|-|SSU98_0912|NisR
Length=165

 Score = 70.0 bits (246),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 49/119 (42%), Positives = 76/119 (64%), Gaps = 4/119 (3%)

Query  9    DDEKNIRDLITKFLESDGYSVTAF-ETGDELMEEFLKKPCELVILDIMMPGTDGLTICRQ  67
            DD+ +I  LI + LE   + VT+  E G+  +  F+    +L++LDIMM + DGL IC+ 
Sbjct  13   DDDESILRLIKNSLERSEFEVTTRKEVGNIDICSFV--GFDLILLDIMM-SIDGLEICKS  69

Query  68   LRTITDVPIIMLTAKDSEYDYVRGITLGGDDYLTKPFRLTTLLMRVKSLLRRMDMNTKK  126
            +R   DVPII +TAK+ + D  RG+  G+DDY+ KPF +T L+ RV+  ++R + N K+
Sbjct  70   IREQIDVPIIFVTAKQLDSDLARGVKAGADDYIKKPFSITELVARVRMHIQREERNRKN  128

27) BMWSH_1548 in NC_017138


> NC_009443_P1|5|G5|146320759|YP_001200470.1|Streptococcus_suis_98HAH33|-|3546..4043|-|SSU98_0912|NisR
Length=165

 Score = 68.1 bits (239),  Expect = 4e-13, Method: Compositional matrix adjust.
 Identities = 49/118 (42%), Positives = 82/118 (70%), Gaps = 4/118 (3%)

Query  5    KILIVEDDPFISEMVKEGLVKEGYEVTAVFDGEEALEILNVQTYDVILLDLMLPKVDGME  64
            +IL ++DD  I  ++K++L +  +EVT+       ++I +   +D+ILLD+M++ +DG+E
Sbjct  8    QILAIDDDESILRLIKNSLERSEFEVTTR-KEVGNIDICSFVGFDLILLDIMMS-IDGLE  65

Query  65   -CLKIIRSKSMVPVLIMSAKDEDVDKALGLGFGADDYIAKPFSMIELLARIKAIIRRE  121
             C K IR +  VP+++++AK+ D D A G+  GADDYI KPFS+ EL+AR++  I+RE
Sbjct  66   IC-KSIREQIDVPIIFVTAKQLDSDLARGVKAGADDYIKKPFSITELVARVRMHIQRE  122

28) AM1_6069 in NC_009925


> NC_009443_P1|5|G5|146320759|YP_001200470.1|Streptococcus_suis_98HAH33|-|3546..4043|-|SSU98_0912|NisR
Length=165

 Score = 66.3 bits (232),  Expect = 1e-12, Method: Compositional matrix adjust.
 Identities = 48/119 (41%), Positives = 77/119 (65%), Gaps = 5/119 (4%)

Query  2    DSKQHSILVIDDEERVFDVIEGLLLREGYQLTYAASGPAAIQQMDSLQPDVILLDVMMPQ  61
            + K   IL IDD+E ++ +I   L R  +++T +    + I+    +  D+ILLD+MM+ 
Sbjct  3    EKKIYQILAIDDDESILRLIKNSLERSEFEVT-TRKEVGNIDICSFVGFDLILLDIMMS-  60

Query  62   MDGIEVCRQIKANPNWKHIPIIIVTALTSKEDLARSLDAGADDFISKPINSLELRARVR  120
            +DG+E+C+ I+ + +   +PII+VTA     DLAR++ AGADD+I KP++  EL ARVR
Sbjct  61   IDGLEICKSIREQID---VPIIFVTAKQLDSDLARGVKAGADDYIKKPFSITELVARVR  116