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PAthogenisity Island DataBase (PAI DB)

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Homologs of PSPTO_1368 gene of NC_004578_P1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) PSPPH_1253
( YP_273515.1 )

lipoprotein

NC_005773
(Pseudomonas syringae 1448A)

1e-32

2) Psyr_1181
( YP_234273.1 )

hypothetical protein

NC_007005
(Pseudomonas syringae B728a)

1e-32

3) PSPTO_1368
( NP_791195.1 )

lipoprotein

NC_004578
(Pseudomonas syringae DC3000)

3e-32

100

4) PSEBR_a3676
( YP_004355026.1 )

lipoprotein

NC_015379
(Pseudomonas brassicacearum NFM421)

4e-06

• Sequence Alignments

1) Psyr_1181 in NC_007005


> NC_004578_P1|5|G5|28868576|NP_791195.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|2050..2337|-|PSPTO_1368|lipoprotein
Length=95

 Score =  132 bits (486),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 73/95 (77%), Positives = 86/95 (91%), Gaps = 0/95 (0%)

Query  1   MFKQCLLLATAISLSGCWSLMYHLDGERCVYPGTRHGWAWGTKDVTSTWPWLIDVPFSLA  60
           M+K+CLLL  ++SL+GCWSLM HLDGERC+YPGTR+GWAWGT +   +WP LIDVPFSLA
Sbjct  1   MLKKCLLLVISMSLGGCWSLMIHLDGERCIYPGTRQGWAWGTHNGGQSWPILIDVPFSLA  60

Query  61  LDTLFLPYDLTAFLPENLGGDDRECHFNDGLNVLG  95
           LDTL+LPYDLTAFLPENLGGDDR C+F++GLNVLG
Sbjct  61  LDTLLLPYDLTAFLPENLGGDDRKCQFSGGLNVLG  95

2) PSPPH_1253 in NC_005773


> NC_004578_P1|5|G5|28868576|NP_791195.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|2050..2337|-|PSPTO_1368|lipoprotein
Length=95

 Score =  132 bits (486),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 73/95 (77%), Positives = 86/95 (91%), Gaps = 0/95 (0%)

Query  1   MFKQCLLLATAISLSGCWSLMYHLDGERCVYPGTRHGWAWGTKDVTSTWPWLIDVPFSLA  60
           M+K+CLLL  ++SL+GCWSLM HLDGERC+YPGTR+GWAWGT +   +WP LIDVPFSLA
Sbjct  1   MLKKCLLLVISMSLGGCWSLMIHLDGERCIYPGTRQGWAWGTHNGGQSWPILIDVPFSLA  60

Query  61  LDTLFLPYDLTAFLPENLGGDDRECHFNDGLNVLG  95
           LDTL+LPYDLTAFLPENLGGDDR C+F++GLNVLG
Sbjct  61  LDTLLLPYDLTAFLPENLGGDDRKCQFSGGLNVLG  95

3) PSPTO_1368 in NC_004578


> NC_004578_P1|5|G5|28868576|NP_791195.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|2050..2337|-|PSPTO_1368|lipoprotein
Length=95

 Score =  131 bits (481),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 95/95 (100%), Positives = 95/95 (100%), Gaps = 0/95 (0%)

Query  1   MLKKCLLLVISMSLGGCWSLMIHLDGERCIYPGTRQGWAWGTHNGGQSWPILIDVPFSla  60
           MLKKCLLLVISMSLGGCWSLMIHLDGERCIYPGTRQGWAWGTHNGGQSWPILIDVPFSLA
Sbjct  1   MLKKCLLLVISMSLGGCWSLMIHLDGERCIYPGTRQGWAWGTHNGGQSWPILIDVPFSLA  60

Query  61  ldtlllpydltaFLPENLGGDDRKCQFSGGLNVLG  95
           LDTLLLPYDLTAFLPENLGGDDRKCQFSGGLNVLG
Sbjct  61  LDTLLLPYDLTAFLPENLGGDDRKCQFSGGLNVLG  95

4) PSEBR_a3676 in NC_015379


> NC_004578_P1|5|G5|28868576|NP_791195.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|2050..2337|-|PSPTO_1368|lipoprotein
Length=95

 Score = 44.8 bits (150),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 30/73 (42%), Positives = 49/73 (68%), Gaps = 5/73 (6%)

Query  1   MLQKVILLILIASLSGCMATAMRMDYDKHRCPYIGLRFDW-WLVGTSKGKLIPFLLIDAP  59
           ML+K +LL++  SL+GC +  + ++ D +RC Y G R +W W  GT +G     +LID P
Sbjct  1   MLKKCLLLVISMSLGGCWS--LMIHLDGERCIYPGTRQGWAW--GTHNGGQSWPILIDVP  56

Query  60  FSLVVDTVFFPFE  72
           FSL +DT+++P++
Sbjct  57  FSLALDTLLLPYD  69