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PAthogenisity Island DataBase (PAI DB)

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Homologs of STY0289 gene of NC_003198_P1

137

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) CFSAN001921_16060
( YP_008256558.1 )

type VI secretion protein

NC_021814
(Salmonella enterica CFSAN001921)

0.0

2) CFSAN002050_07885
( YP_008259512.1 )

type VI secretion protein

NC_021818
(Salmonella enterica CFSAN002050)

0.0

3) vasA
( YP_002113284.1 )

type VI secretion protein, family protein

NC_011094
(Salmonella enterica CVM19633)

0.0

4) STM0268
( NP_459265.1 )

hypothetical protein

NC_003197
(Salmonella enterica LT2)

0.0

5) SPC_0277
( YP_002635906.1 )

hypothetical protein

NC_012125
(Salmonella enterica RKS4594)

0.0

6) STU288_13405
( YP_007903774.1 )

hypothetical protein

NC_021151
(Salmonella enterica U288)

0.0

7) STMDT12_C02640
( YP_005245960.1 )

hypothetical protein

NC_016860
(Salmonella enterica T000240)

0.0

8) SE451236_07360
( YP_008264521.1 )

type VI secretion protein

NC_021820
(Salmonella enterica 08-1736)

0.0

9) STM14_0315
( YP_005235937.1 )

putative cytoplasmic protein

NC_016856
(Salmonella enterica 14028S)

0.0

10) sciC
( YP_005395774.1 )

SPI-6 associated protein

NC_017046
(Salmonella enterica 798)

0.0

11) STMMW_02661
( YP_005231345.1 )

type VI system protein

NC_016854
(Salmonella enterica D23580)

0.0

12) SC0263
( YP_215250.1 )

hypothetical protein

NC_006905
(Salmonella enterica SC-B67)

0.0

13) sciC
( YP_005180197.1 )

hypothetical protein

NC_016810
(Salmonella enterica SL1344)

0.0

14) vasA
( YP_005241211.1 )

type VI secretion protein

NC_016857
(Salmonella enterica ST4/74)

0.0

15) STMUK_0270
( YP_005250830.1 )

putative cytoplasmic protein

NC_016863
(Salmonella enterica UK-1)

0.0

16) vasA
( YP_002039501.1 )

type VI secretion protein

NC_011080
(Salmonella enterica SL254)

0.0

17) SN31241_12580
( YP_008359175.1 )

Type VI secretion protein

NC_021902
(Salmonella enterica USMARC-S3124.1)

0.0

18) SEEH1578_10430
( YP_008246153.1 )

Protein ImpG/VasA

NC_021810
(Salmonella enterica 41578)

0.0

19) SU5_0910
( YP_006086553.1 )

Protein ImpG/VasA

NC_017623
(Salmonella enterica B182)

0.0

20) CFSAN002069_07805
( YP_008250396.1 )

type VI secretion protein

NC_021812
(Salmonella enterica CFSAN002069)

0.0

21) vasA
( YP_002044251.1 )

type VI secretion protein, family

NC_011083
(Salmonella enterica SL476)

0.0

22) SSPA2333
( YP_002143178.1 )

hypothetical protein

NC_011147
(Salmonella enterica AKU12601)

0.0

23) SPA2501
( YP_151688.1 )

hypothetical protein

NC_006511
(Salmonella enterica ATCC 9150)

0.0

24) STY0289
( NP_454871.1 )

hypothetical protein

NC_003198
(Salmonella enterica CT18)

0.0

100

25) STBHUCCB_27490
( YP_005218259.1 )

Type VI secretion protein

NC_016832
(Salmonella enterica P-stx-12)

0.0

100

26) t2597
( NP_806313.1 )

hypothetical protein

NC_004631
(Salmonella enterica Ty2)

0.0

27) TY21A_13175
( YP_007926888.1 )

hypothetical protein

NC_021176
(Salmonella enterica Ty21a)

0.0

28) SFxv_0217
( YP_005725847.1 )

Outer membrane usher protein

NC_017328
(Shigella flexneri 2002017)

0.0

29) safC
( NP_835942.1 )

outer membrane usher protein

NC_004741
(Shigella flexneri 2457T)

0.0

30) safC
( NP_706159.1 )

outer membrane usher protein

NC_004337
(Shigella flexneri 301)

0.0

31) Varpa_2429
( YP_004154740.1 )

type VI secretion protein

NC_014931
(Variovorax paradoxus EPS)

0.0

32) bgla_4p2460
( YP_004362840.1 )

hypothetical protein

NC_015383
(Burkholderia gladioli BSR3)

0.0

33) BamMC406_6689
( YP_001812342.1 )

type VI secretion protein

NC_010553
(Burkholderia ambifaria MC40-6)

0.0

34) YE2697
( YP_001006888.1 )

hypothetical protein

NC_008800
(Yersinia enterocolitica 8081)

0.0

35) Y11_15771
( YP_006005076.1 )

protein ImpG/VasA

NC_017564
(Yersinia enterocolitica Y11)

0.0

36) YP_2574
( NP_993891.1 )

hypothetical protein

NC_005810
(Yersinia pestis 91001)

0.0

37) A1122_11240
( YP_005521908.1 )

type VI secretion protein

NC_017168
(Yersinia pestis A1122)

0.0

38) YpAngola_A2697
( YP_001607097.1 )

hypothetical protein

NC_010159
(Yersinia pestis Angola)

0.0

39) YPA_2138
( YP_652048.1 )

hypothetical protein

NC_008150
(Yersinia pestis Antiqua)

0.0

40) YPO2947
( YP_002347873.1 )

hypothetical protein

NC_003143
(Yersinia pestis CO92)

0.0

41) YPC_1450
( YP_005623360.1 )

hypothetical protein

NC_017265
(Yersinia pestis Harbin 35)

0.0

42) y1537
( NP_668857.1 )

hypothetical protein

NC_004088
(Yersinia pestis KIM)

0.0

43) YPN_1433
( YP_647363.1 )

hypothetical protein

NC_008149
(Yersinia pestis Nepal516)

0.0

44) YPDSF_2055
( YP_001163407.1 )

hypothetical protein

NC_009381
(Yersinia pestis Pestoides F)

0.0

45) YpsIP31758_1361
( YP_001400340.1 )

hypothetical protein

NC_009708
(Yersinia pseudotuberculosis IP 31758)

0.0

46) YPTB2672
( YP_071182.1 )

hypothetical protein

NC_006155
(Yersinia pseudotuberculosis IP 32953)

0.0

47) YPK_1473
( YP_001720219.1 )

type VI secretion protein

NC_010465
(Yersinia pseudotuberculosis YPIII)

0.0

48) Bphy_6119
( YP_001862222.1 )

type VI secretion protein

NC_010625
(Burkholderia phymatum STM815)

0.0

49) CTU_12100
( YP_003209573.1 )

hypothetical protein

NC_013282
(Cronobacter turicensis z3032)

0.0

50) impG
( YP_006343910.1 )

type VI secretion protein

NC_017933
(Cronobacter sakazakii ES15)

0.0

51) YE105_C1590
( YP_004297789.1 )

hypothetical protein

NC_015224
(Yersinia enterocolitica 105.5R(r))

0.0

52) YPD4_2581
( YP_005505791.1 )

hypothetical protein

NC_017154
(Yersinia pestis D106004)

0.0

53) YPD8_2576
( YP_005509642.1 )

hypothetical protein

NC_017160
(Yersinia pestis D182038)

0.0

54) YPZ3_2595
( YP_003568767.1 )

hypothetical protein

NC_014029
(Yersinia pestis Z176003)

0.0

55) YPTS_2769
( YP_001873186.1 )

type VI secretion protein

NC_010634
(Yersinia pseudotuberculosis PB1/+)

1e-180

56) cts1C
( YP_003366311.1 )

T6SS protein Cts1C

NC_013716
(Citrobacter rodentium ICC168)

1e-177

57) Bphy_7023
( YP_001863075.1 )

type VI secretion protein

NC_010625
(Burkholderia phymatum STM815)

1e-139

58) Varpa_2904
( YP_004155206.1 )

type VI secretion protein

NC_014931
(Variovorax paradoxus EPS)

7e-136

59) BN112_2635
( YP_006968687.1 )

hypothetical protein

NC_019382
(Bordetella bronchiseptica 253)

8e-135

60) BB0805
( NP_887354.1 )

hypothetical protein

NC_002927
(Bordetella bronchiseptica RB50)

9e-135

61) BN117_0751
( YP_006894779.1 )

hypothetical protein

NC_018828
(Bordetella parapertussis Bpp5)

9e-135

62) BN115_0774
( YP_006899020.1 )

hypothetical protein

NC_018829
(Bordetella bronchiseptica MO149)

2e-134

63) BPP0719
( NP_883057.1 )

hypothetical protein

NC_002928
(Bordetella parapertussis 12822)

2e-133

64) Bpet4112
( YP_001632728.1 )

hypothetical protein

NC_010170
(Bordetella petrii DSM 12804)

5e-132

65) AXYL_06392
( YP_003982400.1 )

hypothetical protein

NC_014640
(Achromobacter xylosoxidans A8)

1e-130

66) Aave_1480
( YP_969845.1 )

hypothetical protein

NC_008752
(Acidovorax citrulli AAC00-1)

1e-130

67) Acav_1519
( YP_004234008.1 )

type VI secretion protein

NC_015138
(Acidovorax avenae ATCC 19860)

2e-130

68) D781_2794
( YP_007345230.1 )

type VI secretion protein, VC_A0110 family

NC_020064
(Serratia marcescens FGI94)

1e-128

69) impG
( YP_007406840.1 )

type VI secretion system protein ImpG

NC_020211
(Serratia marcescens WW4)

1e-128

70) H650_00845
( YP_008106025.1 )

type VI secretion system protein ImpG

NC_021500
(Enterobacter sp. R4-368)

2e-128

71) Spro_3011
( YP_001479240.1 )

hypothetical protein

NC_009832
(Serratia proteamaculans 568)

2e-128

72) PT7_0347
( YP_004415511.1 )

hypothetical protein

NC_015458
(Pusillimonas sp. T7-7)

3e-128

73) Fraau_1788
( YP_005377875.1 )

type VI secretion protein

NC_017033
(Frateuria aurantia DSM 6220)

1e-127

74) Daci_3859
( YP_001564875.1 )

type VI secretion protein

NC_010002
(Delftia acidovorans SPH-1)

1e-126

75) DelCs14_2965
( YP_004488327.1 )

type VI secretion lipoprotein

NC_015563
(Delftia sp. Cs1-4)

1e-126

76) XBJ1_2098
( YP_003467997.1 )

hypothetical protein

NC_013892
(Xenorhabdus bovienii SS-2004)

4e-125

77) Pat9b_2505
( YP_004116362.1 )

type VI secretion protein

NC_014837
(Pantoea sp. At-9b)

5e-124

78) EAE_19360
( YP_004594058.1 )

type VI secretion system protein ImpG

NC_015663
(Enterobacter aerogenes KCTC 2190)

1e-123

79) ECENHK_13150
( YP_006579107.1 )

type VI secretion system protein ImpG

NC_018405
(Enterobacter cloacae ENHKU01)

1e-123

80) A3UG_13405
( YP_006478109.1 )

type VI secretion system protein ImpG

NC_018079
(Enterobacter cloacae SDM)

1e-123

81) ST548_p7042
( YP_007387556.1 )

Protein ImpG/VasA

NC_020181
(Enterobacter aerogenes EA1509E)

2e-123

82) impG
( YP_003612057.1 )

type VI secretion system protein ImpG

NC_014121
(Enterobacter cloacae ATCC 13047)

4e-123

83) EbC_05930
( YP_003739984.1 )

type VI secretion system, VCA0110 family

NC_014306
(Erwinia billingiae Eb661)

6e-123

84) Pvag_1040
( YP_003930682.1 )

type VI secretion system, core protein

NC_014562
(Pantoea vagans C9-1)

7e-123

85) ESA_03923
( YP_001439945.1 )

hypothetical protein

NC_009778
(Cronobacter sakazakii ATCC BAA-894)

8e-123

86) ES15_3833
( YP_006344917.1 )

hypothetical protein

NC_017933
(Cronobacter sakazakii ES15)

8e-123

87) CSSP291_18155
( YP_007442483.1 )

type VI secretion system protein ImpG

NC_020260
(Cronobacter sakazakii Sp291)

8e-123

88) PAJ_1658
( YP_005934534.1 )

hypothetical protein

NC_017531
(Pantoea ananatis AJ13355)

2e-122

89) PANA_2356
( YP_003520651.1 )

hypothetical Protein

NC_013956
(Pantoea ananatis LMG 20103)

2e-122

90) PANA5342_1740
( YP_005195170.1 )

type VI secretion system, core protein

NC_016816
(Pantoea ananatis LMG 5342)

2e-122

91) PAGR_g1672
( YP_005992415.1 )

type VI secretion system protein ImpG

NC_017554
(Pantoea ananatis PA13)

2e-122

92) CTU_00850
( YP_003208448.1 )

hypothetical protein

NC_013282
(Cronobacter turicensis z3032)

3e-122

93) EcWSU1_02681
( YP_004952534.1 )

hypothetical protein

NC_016514
(Enterobacter cloacae EcWSU1)

5e-122

94) ENC_07350
( YP_007844797.1 )

type VI secretion protein, VC_A0110 family

NC_021046
(Enterobacter cloacae NCTC 9394)

5e-122

95) W5S_2424
( YP_006283384.1 )

Type VI secretion protein, VC_A0110 family

NC_017845
(Pectobacterium sp. SCC3193)

8e-120

96) Pecwa_2451
( YP_003259819.1 )

hypothetical protein

NC_013421
(Pectobacterium wasabiae WPP163)

3e-119

97) impG2
( YP_005211173.1 )

protein ImpG

NC_016830
(Pseudomonas fluorescens F113)

4e-118

98) tssF1
( YP_006326691.1 )

type VI secretion protein TssF1

NC_017911
(Pseudomonas fluorescens A506)

4e-118

99) AvCA_26630
( YP_007893624.1 )

hypothetical protein

NC_021149
(Azotobacter vinelandii CA)

5e-118

100) AvCA6_26630
( YP_007898673.1 )

hypothetical protein

NC_021150
(Azotobacter vinelandii CA6)

5e-118

101) Avin_26630
( YP_002799814.1 )

hypothetical protein

NC_012560
(Azotobacter vinelandii DJ)

5e-118

102) PSEBR_a5564
( YP_004357098.1 )

hypothetical protein

NC_015379
(Pseudomonas brassicacearum NFM421)

5e-118

103) XNC1_2530
( YP_003712751.1 )

hypothetical protein

NC_014228
(Xenorhabdus nematophila ATCC 19061)

6e-118

104) MDS_0026
( YP_004377809.1 )

hypothetical protein

NC_015410
(Pseudomonas mendocina NK-01)

6e-118

105) G655_00450
( YP_007706941.1 )

type VI secretion protein TssF

NC_020912
(Pseudomonas aeruginosa B136-33)

7e-118

106) PADK2_00460
( YP_006480089.1 )

type VI secretion system protein ImpG

NC_018080
(Pseudomonas aeruginosa DK2)

7e-118

107) PLES_00891
( YP_002437697.1 )

hypothetical protein

NC_011770
(Pseudomonas aeruginosa LESB58)

7e-118

108) PAM18_0090
( YP_005972681.1 )

hypothetical protein

NC_017548
(Pseudomonas aeruginosa M18)

7e-118

109) NCGM2_0092
( YP_005978369.1 )

hypothetical protein

NC_017549
(Pseudomonas aeruginosa NCGM2.S1)

7e-118

110) PA14_01070
( YP_788245.1 )

hypothetical protein

NC_008463
(Pseudomonas aeruginosa UCBPP-PA14)

7e-118

111) PA0088
( NP_248778.1 )

hypothetical protein

NC_002516
(Pseudomonas aeruginosa PAO1)

2e-117

112) M062_00455
( YP_008130557.1 )

type VI secretion system protein ImpG

NC_021577
(Pseudomonas aeruginosa RP73)

2e-117

113) Pmen_2329
( YP_001187819.1 )

hypothetical protein

NC_009439
(Pseudomonas mendocina ymp)

2e-117

114) PFLU6023
( YP_002875507.1 )

hypothetical protein

NC_012660
(Pseudomonas fluorescens SBW25)

3e-117

115) PSPA7_0160
( YP_001345556.1 )

hypothetical protein

NC_009656
(Pseudomonas aeruginosa PA7)

5e-117

116) EPYR_00665
( YP_005801416.1 )

hypothetical protein

NC_017390
(Erwinia pyrifoliae DSM 12163)

6e-117

117) vasA
( YP_002647666.1 )

type VI secretion system family protein, VCA0110

NC_012214
(Erwinia pyrifoliae Ep1/96)

6e-117

118) EAM_0590
( YP_003537681.1 )

hypothetical protein

NC_013971
(Erwinia amylovora ATCC 49946)

2e-116

119) EAMY_3007
( YP_003532362.1 )

type VI secretion system core protein

NC_013961
(Erwinia amylovora CFBP1430)

2e-116

120) Psta_1836
( YP_003370370.1 )

type VI secretion protein

NC_013720
(Pirellula staleyi DSM 6068)

2e-116

121) H045_20430
( YP_007399644.1 )

type VI secretion protein TssF

NC_020209
(Pseudomonas poae RE*1-1-14)

2e-116

122) sciC
( YP_935403.1 )

hypothetical protein

NC_008702
(Azoarcus sp. BH72)

4e-116

123) PFLCHA0_c60500
( YP_008003282.1 )

hypothetical protein

NC_021237
(Pseudomonas fluorescens CHA0)

5e-116

124) tssF
( YP_263149.1 )

type VI secretion protein TssF

NC_004129
(Pseudomonas protegens Pf-5)

5e-116

125) ETA_06310
( YP_001906575.1 )

hypothetical protein

NC_010694
(Erwinia tasmaniensis Et1/99)

2e-115

126) Psefu_0247
( YP_004472325.1 )

type VI secretion protein

NC_015556
(Pseudomonas fulva 12-X)

3e-115

127) PAU_03800
( YP_003042629.1 )

hypothetical protein

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

2e-114

128) vasA
( YP_005817032.1 )

Type VI secretion system family protein

NC_017445
(Erwinia sp. Ejp617)

3e-114

129) TKWG_23540
( YP_006381283.1 )

hypothetical protein

NC_017964
(Advenella kashmirensis WT001)

2e-113

130) RHECIAT_PB0000212
( YP_001984473.1 )

hypothetical protein

NC_010996
(Rhizobium etli CIAT 652)

1e-108

131) XAC4142
( NP_644441.1 )

hypothetical protein

NC_003919
(Xanthomonas axonopodis 306)

1e-107

132) XAC29_20845
( YP_007638513.1 )

hypothetical protein

NC_020800
(Xanthomonas axonopodis Xac29-1)

1e-107

133) XCAW_00157
( YP_007648182.1 )

Type VI secretion protein, VC_A0110 family

NC_020815
(Xanthomonas citri Aw12879)

1e-107

134) XACM_4010
( YP_004853544.1 )

hypothetical protein

NC_016010
(Xanthomonas axonopodis F1)

8e-107

135) XCV4238
( YP_365969.1 )

hypothetical protein

NC_007508
(Xanthomonas campestris 85-10)

2e-106

136) Lcho_4086
( YP_001793103.1 )

type VI secretion protein

NC_010524
(Leptothrix cholodnii SP-6)

4e-105

137) sciC
( YP_005043192.1 )

putative cytoplasmic protein, sciC

NC_016626
(Burkholderia sp. YI23)

5e-98

• Sequence Alignments

1) CFSAN002050_07885 in NC_021818


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  985 bits (3733),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 624/627 (99%), Positives = 627/627 (100%), Gaps = 0/627 (0%)

Query  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60
            MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKIDAEFPRFTQRLLEVVSPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120
            QLKIDAEFPRFTQRLLEVV+PNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180
            PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  ELTFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240
            EL+FSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  eglepgqgllplAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300
            EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360
            RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSENARRYGTRTPYTGSE  420
            QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSE+ARRYGTRTPYTGSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIrpp  480
            VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  481  rppqppLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540
            RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600
            LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627
            FSQMTLHSMQRGHVMTWPVRTGQRGSV
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

2) SPC_0277 in NC_012125


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  985 bits (3733),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 624/627 (99%), Positives = 627/627 (100%), Gaps = 0/627 (0%)

Query  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60
            MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKIDAEFPRFTQRLLEVVSPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120
            QLKIDAEFPRFTQRLLEVV+PNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180
            PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  ELTFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240
            EL+FSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  eglepgqgllplAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300
            EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360
            RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSENARRYGTRTPYTGSE  420
            QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSE+ARRYGTRTPYTGSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIrpp  480
            VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  481  rppqppLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540
            RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600
            LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627
            FSQMTLHSMQRGHVMTWPVRTGQRGSV
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

3) vasA in NC_011094


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  985 bits (3732),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 623/627 (99%), Positives = 627/627 (100%), Gaps = 0/627 (0%)

Query  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60
            MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKIDAEFPRFTQRLLEVVSPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120
            QLKIDAEFPRFTQRLLEVV+PNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180
            PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  ELTFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240
            EL+FSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  eglepgqgllplAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300
            EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360
            RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSENARRYGTRTPYTGSE  420
            QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSE+ARRYGTRTPYTGSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  421  IFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIrpp  480
            +FLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  481  rppqppLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540
            RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600
            LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627
            FSQMTLHSMQRGHVMTWPVRTGQRGSV
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

4) STM0268 in NC_003197


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  985 bits (3733),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 624/627 (99%), Positives = 627/627 (100%), Gaps = 0/627 (0%)

Query  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60
            MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKIDAEFPRFTQRLLEVVSPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120
            QLKIDAEFPRFTQRLLEVV+PNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180
            PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  ELTFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240
            EL+FSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  eglepgqgllplAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300
            EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360
            RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSENARRYGTRTPYTGSE  420
            QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSE+ARRYGTRTPYTGSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIrpp  480
            VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  481  rppqppLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540
            RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600
            LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627
            FSQMTLHSMQRGHVMTWPVRTGQRGSV
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

5) STU288_13405 in NC_021151


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  985 bits (3733),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 624/627 (99%), Positives = 627/627 (100%), Gaps = 0/627 (0%)

Query  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60
            MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKIDAEFPRFTQRLLEVVSPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120
            QLKIDAEFPRFTQRLLEVV+PNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180
            PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  ELTFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240
            EL+FSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  eglepgqgllplAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300
            EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360
            RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSENARRYGTRTPYTGSE  420
            QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSE+ARRYGTRTPYTGSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIrpp  480
            VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  481  rppqppLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540
            RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600
            LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627
            FSQMTLHSMQRGHVMTWPVRTGQRGSV
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

6) CFSAN001921_16060 in NC_021814


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  985 bits (3733),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 624/627 (99%), Positives = 627/627 (100%), Gaps = 0/627 (0%)

Query  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60
            MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKIDAEFPRFTQRLLEVVSPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120
            QLKIDAEFPRFTQRLLEVV+PNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180
            PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  ELTFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240
            EL+FSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  eglepgqgllplAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300
            EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360
            RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSENARRYGTRTPYTGSE  420
            QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSE+ARRYGTRTPYTGSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIrpp  480
            VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  481  rppqppLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540
            RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600
            LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627
            FSQMTLHSMQRGHVMTWPVRTGQRGSV
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

7) STMDT12_C02640 in NC_016860


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  984 bits (3730),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 623/627 (99%), Positives = 627/627 (100%), Gaps = 0/627 (0%)

Query  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60
            MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKIDAEFPRFTQRLLEVVSPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120
            QLKIDAEFPRFTQRLLEVV+PNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180
            PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  ELTFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240
            EL+FSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  eglepgqgllplAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300
            EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360
            RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  361  HEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSENARRYGTRTPYTGSE  420
            +EVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSE+ARRYGTRTPYTGSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIrpp  480
            VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  481  rppqppLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540
            RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600
            LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627
            FSQMTLHSMQRGHVMTWPVRTGQRGSV
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

8) SE451236_07360 in NC_021820


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  983 bits (3724),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 623/627 (99%), Positives = 627/627 (100%), Gaps = 0/627 (0%)

Query  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60
            MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKIDAEFPRFTQRLLEVVSPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120
            QLKIDAEFPRFTQRLLEVV+PNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180
            PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  ELTFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240
            EL+FSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  eglepgqgllplAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300
            EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPPDWLIHQTDAAQFSLFCTPVINLLPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360
            RLPPDWLIHQTDAAQFSLFCTPVINL+PRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSENARRYGTRTPYTGSE  420
            QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSE+ARRYGTRTPYTGSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIrpp  480
            VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  481  rppqppLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540
            RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600
            LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627
            FSQMTLHSMQRGHVMTWPVRTGQRGSV
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

9) SC0263 in NC_006905


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  983 bits (3725),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 623/627 (99%), Positives = 627/627 (100%), Gaps = 0/627 (0%)

Query  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60
            MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKIDAEFPRFTQRLLEVVSPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120
            QLKIDAEFPRFTQRLLEVV+PNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180
            PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  ELTFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240
            EL+FSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  eglepgqgllplAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300
            EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360
            RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSENARRYGTRTPYTGSE  420
            QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSE+ARRYGTRTPYTGSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIrpp  480
            VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  481  rppqppLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540
            RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIAHHVSINT  600
            LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIA+HVSINT
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627
            FSQMTLHSMQRGHVMTWPVRTGQRGSV
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

10) STM14_0315 in NC_016856


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  983 bits (3724),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 623/627 (99%), Positives = 627/627 (100%), Gaps = 0/627 (0%)

Query  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60
            MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKIDAEFPRFTQRLLEVVSPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120
            QLKIDAEFPRFTQRLLEVV+PNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180
            PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  ELTFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240
            EL+FSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  eglepgqgllplAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300
            EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPPDWLIHQTDAAQFSLFCTPVINLLPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360
            RLPPDWLIHQTDAAQFSLFCTPVINL+PRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSENARRYGTRTPYTGSE  420
            QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSE+ARRYGTRTPYTGSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIrpp  480
            VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  481  rppqppLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540
            RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600
            LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627
            FSQMTLHSMQRGHVMTWPVRTGQRGSV
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

11) sciC in NC_017046


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  983 bits (3724),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 623/627 (99%), Positives = 627/627 (100%), Gaps = 0/627 (0%)

Query  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60
            MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKIDAEFPRFTQRLLEVVSPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120
            QLKIDAEFPRFTQRLLEVV+PNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180
            PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  ELTFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240
            EL+FSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  eglepgqgllplAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300
            EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPPDWLIHQTDAAQFSLFCTPVINLLPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360
            RLPPDWLIHQTDAAQFSLFCTPVINL+PRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSENARRYGTRTPYTGSE  420
            QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSE+ARRYGTRTPYTGSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIrpp  480
            VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  481  rppqppLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540
            RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600
            LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627
            FSQMTLHSMQRGHVMTWPVRTGQRGSV
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

12) STMMW_02661 in NC_016854


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  983 bits (3724),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 623/627 (99%), Positives = 627/627 (100%), Gaps = 0/627 (0%)

Query  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60
            MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKIDAEFPRFTQRLLEVVSPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120
            QLKIDAEFPRFTQRLLEVV+PNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180
            PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  ELTFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240
            EL+FSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  eglepgqgllplAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300
            EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPPDWLIHQTDAAQFSLFCTPVINLLPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360
            RLPPDWLIHQTDAAQFSLFCTPVINL+PRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSENARRYGTRTPYTGSE  420
            QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSE+ARRYGTRTPYTGSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIrpp  480
            VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  481  rppqppLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540
            RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600
            LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627
            FSQMTLHSMQRGHVMTWPVRTGQRGSV
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

13) sciC in NC_016810


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  983 bits (3724),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 623/627 (99%), Positives = 627/627 (100%), Gaps = 0/627 (0%)

Query  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60
            MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKIDAEFPRFTQRLLEVVSPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120
            QLKIDAEFPRFTQRLLEVV+PNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180
            PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  ELTFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240
            EL+FSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  eglepgqgllplAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300
            EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPPDWLIHQTDAAQFSLFCTPVINLLPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360
            RLPPDWLIHQTDAAQFSLFCTPVINL+PRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSENARRYGTRTPYTGSE  420
            QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSE+ARRYGTRTPYTGSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIrpp  480
            VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  481  rppqppLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540
            RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600
            LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627
            FSQMTLHSMQRGHVMTWPVRTGQRGSV
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

14) vasA in NC_016857


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  983 bits (3724),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 623/627 (99%), Positives = 627/627 (100%), Gaps = 0/627 (0%)

Query  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60
            MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKIDAEFPRFTQRLLEVVSPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120
            QLKIDAEFPRFTQRLLEVV+PNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180
            PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  ELTFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240
            EL+FSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  eglepgqgllplAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300
            EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPPDWLIHQTDAAQFSLFCTPVINLLPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360
            RLPPDWLIHQTDAAQFSLFCTPVINL+PRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSENARRYGTRTPYTGSE  420
            QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSE+ARRYGTRTPYTGSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIrpp  480
            VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  481  rppqppLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540
            RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600
            LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627
            FSQMTLHSMQRGHVMTWPVRTGQRGSV
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

15) STMUK_0270 in NC_016863


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  983 bits (3724),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 622/627 (99%), Positives = 627/627 (100%), Gaps = 0/627 (0%)

Query  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60
            MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKIDAEFPRFTQRLLEVVSPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120
            QLKIDAEFPRFTQRLLEVV+PNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PEGENTACQFRSSQDVTLWPLSIEEIRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180
            PEGENTACQFRSSQDVTLWPLSIEE+RLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  ELTFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240
            EL+FSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  eglepgqgllplAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300
            EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPPDWLIHQTDAAQFSLFCTPVINLLPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360
            RLPPDWLIHQTDAAQFSLFCTPVINL+PRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSENARRYGTRTPYTGSE  420
            QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSE+ARRYGTRTPYTGSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIrpp  480
            VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  481  rppqppLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540
            RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600
            LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627
            FSQMTLHSMQRGHVMTWPVRTGQRGSV
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

16) vasA in NC_011080


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  982 bits (3721),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 623/627 (99%), Positives = 626/627 (99%), Gaps = 0/627 (0%)

Query  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60
            MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKIDAEFPRFTQRLLEVVSPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120
            QLKIDAEFPRFTQRLLEVV+PNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180
            PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  ELTFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240
            EL+FSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  eglepgqgllplAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300
            EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360
            RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSENARRYGTRTPYTCSE  420
            QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSE+ARRYGTRTPYT SE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIrpp  480
            VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  481  rppqppLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540
            RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600
            LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627
            FSQMTLHSMQRGHVMTWPVRTGQRGSV
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

17) SN31241_12580 in NC_021902


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  982 bits (3721),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 623/627 (99%), Positives = 626/627 (99%), Gaps = 0/627 (0%)

Query  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60
            MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKIDAEFPRFTQRLLEVVSPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120
            QLKIDAEFPRFTQRLLEVV+PNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180
            PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  ELTFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240
            EL+FSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  eglepgqgllplAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300
            EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360
            RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSENARRYGTRTPYTCSE  420
            QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSE+ARRYGTRTPYT SE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIrpp  480
            VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  481  rppqppLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540
            RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600
            LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627
            FSQMTLHSMQRGHVMTWPVRTGQRGSV
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

18) SEEH1578_10430 in NC_021810


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  981 bits (3716),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 622/627 (99%), Positives = 625/627 (99%), Gaps = 0/627 (0%)

Query  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQRTDIADPYVERMIEAFSFLSART  60
            MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQ TDIADPYVERMIEAFSFLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKIDAEFPRFTQRLLEVVSPNYVTPTPSMAVAKLYPDTQEGDLAKGVTVPRDTAFVSPI  120
            QLKIDAEFPRFTQRLLEVV+PNYVTPTPSMAV KLYPDTQEGDLAKGVTVPRDTAFVSPI
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180
            PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  ELTFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240
            EL+FSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  eglepgqgllplAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300
            EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360
            RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSENARRYGTRTPYTGSE  420
            QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSE+ARRYGTRTPYTGSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIrpp  480
            VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  481  rppqppLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540
            RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600
            LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627
            FSQMTLHSMQRGHVMTWPVRTGQRGSV
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

19) SU5_0910 in NC_017623


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  981 bits (3716),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 622/627 (99%), Positives = 625/627 (99%), Gaps = 0/627 (0%)

Query  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQRTDIADPYVERMIEAFSFLSART  60
            MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQ TDIADPYVERMIEAFSFLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKIDAEFPRFTQRLLEVVSPNYVTPTPSMAVAKLYPDTQEGDLAKGVTVPRDTAFVSPI  120
            QLKIDAEFPRFTQRLLEVV+PNYVTPTPSMAV KLYPDTQEGDLAKGVTVPRDTAFVSPI
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180
            PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  ELTFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240
            EL+FSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  eglepgqgllplAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300
            EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360
            RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSENARRYGTRTPYTGSE  420
            QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSE+ARRYGTRTPYTGSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIrpp  480
            VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  481  rppqppLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540
            RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600
            LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627
            FSQMTLHSMQRGHVMTWPVRTGQRGSV
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

20) CFSAN002069_07805 in NC_021812


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  981 bits (3716),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 622/627 (99%), Positives = 625/627 (99%), Gaps = 0/627 (0%)

Query  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQRTDIADPYVERMIEAFSFLSART  60
            MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQ TDIADPYVERMIEAFSFLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKIDAEFPRFTQRLLEVVSPNYVTPTPSMAVAKLYPDTQEGDLAKGVTVPRDTAFVSPI  120
            QLKIDAEFPRFTQRLLEVV+PNYVTPTPSMAV KLYPDTQEGDLAKGVTVPRDTAFVSPI
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180
            PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  ELTFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240
            EL+FSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  eglepgqgllplAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300
            EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360
            RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSENARRYGTRTPYTGSE  420
            QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSE+ARRYGTRTPYTGSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIrpp  480
            VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  481  rppqppLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540
            RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600
            LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627
            FSQMTLHSMQRGHVMTWPVRTGQRGSV
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

21) vasA in NC_011083


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  981 bits (3716),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 622/627 (99%), Positives = 625/627 (99%), Gaps = 0/627 (0%)

Query  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQRTDIADPYVERMIEAFSFLSART  60
            MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQ TDIADPYVERMIEAFSFLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKIDAEFPRFTQRLLEVVSPNYVTPTPSMAVAKLYPDTQEGDLAKGVTVPRDTAFVSPI  120
            QLKIDAEFPRFTQRLLEVV+PNYVTPTPSMAV KLYPDTQEGDLAKGVTVPRDTAFVSPI
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180
            PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  ELTFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240
            EL+FSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  eglepgqgllplAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300
            EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360
            RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSENARRYGTRTPYTGSE  420
            QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSE+ARRYGTRTPYTGSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIrpp  480
            VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  481  rppqppLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540
            RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600
            LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627
            FSQMTLHSMQRGHVMTWPVRTGQRGSV
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

22) SSPA2333 in NC_011147


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  980 bits (3715),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 622/627 (99%), Positives = 625/627 (99%), Gaps = 0/627 (0%)

Query  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60
            MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKIDAEFPRFTQRLLEVVSPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120
            QLKIDAEFPRFTQRLLEVV+PNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180
            PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  ELTFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240
            EL+FSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  eglepgqgllplAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300
            EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360
            RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSENARRYGTRTPYTGSE  420
            QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSE+ARRYGTRTPYTGSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  421  VFLSLVDQHEAPYPENLRHITVTAMATNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIrpp  480
            VFLSLVDQHEAPYPENLRHITVTAM TNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  481  rppqppLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540
            RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600
            LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  601  FSQMTLHSMQRGHVMTWLVRTGQRGSV  627
            FSQMTLHSMQRGHVMTW VRTGQRGSV
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

23) SPA2501 in NC_006511


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  980 bits (3713),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 621/627 (99%), Positives = 625/627 (99%), Gaps = 0/627 (0%)

Query  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60
            MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKIDAEFPRFTQRLLEVVSPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120
            QLKIDAEFPRFTQRLLEVV+PNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PEGENTACQFRSSQDVTLWPLPIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180
            PEGENTACQFRSSQDVTLWPL+IEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  ELTFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240
            EL+FSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  eglepgqgllplAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300
            EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360
            RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSENARRYGTRTPYTGSE  420
            QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSE+ARRYGTRTPYTGSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  421  VFLSLVDQHEAPYPENLRHITVTAMATNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIrpp  480
            VFLSLVDQHEAPYPENLRHITVTAM TNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  481  rppqppLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540
            RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600
            LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  601  FSQMTLHSMQRGHVMTWLVRTGQRGSV  627
            FSQMTLHSMQRGHVMTW VRTGQRGSV
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

24) STY0289 in NC_003198


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  959 bits (3632),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 627/627 (100%), Positives = 627/627 (100%), Gaps = 0/627 (0%)

Query  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60
            MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120
            QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180
            PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240
            ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  eglepgqgllplAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300
            EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360
            RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFslrreprrssesarrYGTRTPYTGSE  420
            QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIrpp  480
            VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  481  rppqppLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540
            RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600
            LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627
            FSQMTLHSMQRGHVMTWPVRTGQRGSV
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

25) STBHUCCB_27490 in NC_016832


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  959 bits (3632),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 627/627 (100%), Positives = 627/627 (100%), Gaps = 0/627 (0%)

Query  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60
            MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120
            QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180
            PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240
            ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  eglepgqgllplAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300
            EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360
            RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFslrreprrssesarrYGTRTPYTGSE  420
            QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIrpp  480
            VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  481  rppqppLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540
            RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600
            LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627
            FSQMTLHSMQRGHVMTWPVRTGQRGSV
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

26) TY21A_13175 in NC_021176


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  955 bits (3619),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 626/627 (99%), Positives = 626/627 (99%), Gaps = 0/627 (0%)

Query  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60
            MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120
            QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180
            PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  ELAFSELAGPARLLFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240
            ELAFSELAGPARL FYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  eglepgqgllplAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300
            EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360
            RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFslrreprrssesarrYGTRTPYTGSE  420
            QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIrpp  480
            VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  481  rppqppLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540
            RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600
            LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627
            FSQMTLHSMQRGHVMTWPVRTGQRGSV
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

27) t2597 in NC_004631


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  955 bits (3619),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 626/627 (99%), Positives = 626/627 (99%), Gaps = 0/627 (0%)

Query  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60
            MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120
            QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180
            PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  ELAFSELAGPARLLFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240
            ELAFSELAGPARL FYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  eglepgqgllplAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300
            EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360
            RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFslrreprrssesarrYGTRTPYTGSE  420
            QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIrpp  480
            VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  481  rppqppLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540
            RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600
            LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627
            FSQMTLHSMQRGHVMTWPVRTGQRGSV
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

28) SFxv_0217 in NC_017328


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  951 bits (3603),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 571/627 (92%), Positives = 606/627 (97%), Gaps = 0/627 (0%)

Query  1    MDPRLLEYYNRELSYLRETGAEFAARHPKVAARLGMQGTDIADPYVERMVEAFSFLTART  60
            MDPRLLEYYNRELSYLRETGAEFA+ HPK+AARLGMQGTDIADPYVERM+EAFSFL+ART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKIDAEFPRFTQRLLEVVSPNYVTPTPSMSVAQLHPDTEEGDLAKGFTVPRDTAFFSAI  120
            QLKIDAEFPRFTQRLLEVV+PNYVTPTPSM+V +L PDT+EGDLAKG TVPRDTAF S+I
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PEGESTACQFRSSQDVTLWPLAIEEARLTAAPPDMPALHRYLPANIHVAGALRITLRTFG  180
            PEGE+TACQFRSSQDVTLWPL+IEE RLTAAPPDMPALHRYLP+NIHVAGALRITLRTFG
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  ELTFSQLAGLDRLPFYLCGEERTASHLLELLHTSAIAPLAGIPGHFDGALDVNLQQPVMY  240
            EL+FS+LAG  RLPFYLCGEER ASHL+ELLHTSA+A LAG PGHFDG L+VNLQ+PV  
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  EGLEPDQGLLPLAWNVFHGHNLLHEYFACPERFYFFTPTGLSAGLQKIDGGVAEIVILLN  300
            EGLEP+QGLLPLAWNVFHGHNLLHE+FACPERFYFFTPTGLSAGLQK++G VAEIVILLN
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPPDWLIHQTNAAQFSLFCTPVINLFPRVTARIDVTHSTTEQHLVVDRTHPLDYEVFSV  360
            RLPPDWLIHQT+AAQFSLFCTPVINLFPR T+RI+VTHS TEQHLVVDRT+PLDYEVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  361  QEVEGLETDTTRKMAFRPLYHTRNNDEGNHGRYFSLRREPRRLSENARRYGTRTPYTGSE  420
            QEVEGLE++TTRKM FRPLYHTRNNDEGNHGRYFSLRREPRR SE+ARRYGTRTPYTGSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  421  VFLSLVDQYEAPYPENLRHITITAMVTNRDLPCLIARNGRDDLTVDAAIPVAGVGLIRPP  480
            VFLSLVDQ EAPYPENLRHIT+TAMVTNRDLPCLI+RNGRDDLTVDAAIPVAGVGLIRPP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  481  RSPQPPMAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540
            R+PQPP+AEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600
            LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  601  FSQMTLHSMQRGKIMTWPVRAGQRGSV  627
            FSQMTLHSMQRG +MTWPVR+GQRGSV
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

29) safC in NC_004741


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  951 bits (3603),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 571/627 (92%), Positives = 606/627 (97%), Gaps = 0/627 (0%)

Query  1    MDPRLLEYYNRELSYLRETGAEFAARHPKVAARLGMQGTDIADPYVERMVEAFSFLTART  60
            MDPRLLEYYNRELSYLRETGAEFA+ HPK+AARLGMQGTDIADPYVERM+EAFSFL+ART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKIDAEFPRFTQRLLEVVSPNYVTPTPSMSVAQLHPDTEEGDLAKGFTVPRDTAFFSAI  120
            QLKIDAEFPRFTQRLLEVV+PNYVTPTPSM+V +L PDT+EGDLAKG TVPRDTAF S+I
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PEGESTACQFRSSQDVTLWPLAIEEARLTAAPPDMPALHRYLPANIHVAGALRITLRTFG  180
            PEGE+TACQFRSSQDVTLWPL+IEE RLTAAPPDMPALHRYLP+NIHVAGALRITLRTFG
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  ELTFSQLAGLDRLPFYLCGEERTASHLLELLHTSAIAPLAGIPGHFDGALDVNLQQPVMY  240
            EL+FS+LAG  RLPFYLCGEER ASHL+ELLHTSA+A LAG PGHFDG L+VNLQ+PV  
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  EGLEPDQGLLPLAWNVFHGHNLLHEYFACPERFYFFTPTGLSAGLQKIDGGVAEIVILLN  300
            EGLEP+QGLLPLAWNVFHGHNLLHE+FACPERFYFFTPTGLSAGLQK++G VAEIVILLN
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPPDWLIHQTNAAQFSLFCTPVINLFPRVTARIDVTHSTTEQHLVVDRTHPLDYEVFSV  360
            RLPPDWLIHQT+AAQFSLFCTPVINLFPR T+RI+VTHS TEQHLVVDRT+PLDYEVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  361  QEVEGLETDTTRKMAFRPLYHTRNNDEGNHGRYFSLRREPRRLSENARRYGTRTPYTGSE  420
            QEVEGLE++TTRKM FRPLYHTRNNDEGNHGRYFSLRREPRR SE+ARRYGTRTPYTGSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  421  VFLSLVDQYEAPYPENLRHITITAMVTNRDLPCLIARNGRDDLTVDAAIPVAGVGLIRPP  480
            VFLSLVDQ EAPYPENLRHIT+TAMVTNRDLPCLI+RNGRDDLTVDAAIPVAGVGLIRPP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  481  RSPQPPMAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540
            R+PQPP+AEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600
            LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  601  FSQMTLHSMQRGKIMTWPVRAGQRGSV  627
            FSQMTLHSMQRG +MTWPVR+GQRGSV
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

30) safC in NC_004337


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  951 bits (3603),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 571/627 (92%), Positives = 606/627 (97%), Gaps = 0/627 (0%)

Query  1    MDPRLLEYYNRELSYLRETGAEFAARHPKVAARLGMQGTDIADPYVERMVEAFSFLTART  60
            MDPRLLEYYNRELSYLRETGAEFA+ HPK+AARLGMQGTDIADPYVERM+EAFSFL+ART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKIDAEFPRFTQRLLEVVSPNYVTPTPSMSVAQLHPDTEEGDLAKGFTVPRDTAFFSAI  120
            QLKIDAEFPRFTQRLLEVV+PNYVTPTPSM+V +L PDT+EGDLAKG TVPRDTAF S+I
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PEGESTACQFRSSQDVTLWPLAIEEARLTAAPPDMPALHRYLPANIHVAGALRITLRTFG  180
            PEGE+TACQFRSSQDVTLWPL+IEE RLTAAPPDMPALHRYLP+NIHVAGALRITLRTFG
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  ELTFSQLAGLDRLPFYLCGEERTASHLLELLHTSAIAPLAGIPGHFDGALDVNLQQPVMY  240
            EL+FS+LAG  RLPFYLCGEER ASHL+ELLHTSA+A LAG PGHFDG L+VNLQ+PV  
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  EGLEPDQGLLPLAWNVFHGHNLLHEYFACPERFYFFTPTGLSAGLQKIDGGVAEIVILLN  300
            EGLEP+QGLLPLAWNVFHGHNLLHE+FACPERFYFFTPTGLSAGLQK++G VAEIVILLN
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPPDWLIHQTNAAQFSLFCTPVINLFPRVTARIDVTHSTTEQHLVVDRTHPLDYEVFSV  360
            RLPPDWLIHQT+AAQFSLFCTPVINLFPR T+RI+VTHS TEQHLVVDRT+PLDYEVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  361  QEVEGLETDTTRKMAFRPLYHTRNNDEGNHGRYFSLRREPRRLSENARRYGTRTPYTGSE  420
            QEVEGLE++TTRKM FRPLYHTRNNDEGNHGRYFSLRREPRR SE+ARRYGTRTPYTGSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  421  VFLSLVDQYEAPYPENLRHITITAMVTNRDLPCLIARNGRDDLTVDAAIPVAGVGLIRPP  480
            VFLSLVDQ EAPYPENLRHIT+TAMVTNRDLPCLI+RNGRDDLTVDAAIPVAGVGLIRPP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  481  RSPQPPMAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540
            R+PQPP+AEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600
            LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  601  FSQMTLHSMQRGKIMTWPVRAGQRGSV  627
            FSQMTLHSMQRG +MTWPVR+GQRGSV
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

31) Varpa_2429 in NC_014931


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  709 bits (2681),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 410/627 (66%), Positives = 525/627 (84%), Gaps = 1/627 (0%)

Query  1    MDPQLLDYYNKELVYMREAASEFAASHPKIAKRLGMHGIEVADPYVERLIESFSFLSARM  60
            MDP+LL+YYN+EL Y+RE+++EFA+ HPKIA RLGM+G ++ADPYVER+IE+FSFLSAR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QIKLDAEFPRFTQRLLEVLYPNYLSPTPSMAVAQLHPSVKEGDFTRGFVVPRGTAFHARV  120
            Q+K+DAEFPRFTQRLLEV+ PNY++PTPSMAV +L P  +EGD+++G  VPR+TAF + +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PAGEETPCEFRSSQDVTLWPIEIVDAKLTGAPPDIPALERYLPPHVQVTGALRLRLRTVG  180
            P GE+T+C+FRSSQDVTLWP+ I + +LT+APPD+PAL+RYLPP+++V+GALR+ LRT G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  EMGFGALVGLDRLPIYLRGNEHVASHLFELLHTSAVATFVGEPGKLMERPHVVTDGALVH  240
            E++F+ L G  RLP+YL G+E++ASHLFELLHTSAVAT+ GEPG +    +V  + ++ H
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  EglapgqgllplaWNTFHGHNLLHEYFACPERFYFFTLTQLAPGLARAQGKEIEILVLLS  300
            EGL PGQGLLPLAWN FHGHNLLHE+FACPERFYFFT T L++GL + QG+  EI++LL+
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  K-PPRSLGALVDAGQFALFSTPVVNLFERRTDRVELNAAQPEFHLVPDRSRPLDFEVYSV  359
            + PP  L    DA+QF+LF TPV+NLF R T R+E+  +  E HLV DR+RPLD+EV+SV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  360  QRIAGQQAQTTAELEFRPLYQTLNEDEGNHGRYFSVRREQRLASDTSRKYGTRTPYIGTE  419
            Q + G +A+TT  + FRPLY+T N+DEGNHGRYFS+RRE R +S+++R+YGTRTPY G+E
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  420  VFLSLVDQHEAPYPESLRYLSVKAMLTNRDLPCLVPRNGHSDLAVSDSIPVSAVGLIRPP  479
            VFLSLVDQHEAPYPE+LR ++V AM+TNRDLPCL+PRNG+ DL+V  +IPV++VGLIRPP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  480  SIPKSPFAQREIAWRLIRQLGFNHLPLADMPHREGAQALRDMLRLFVSADSDVLRRQIDS  539
              P++P+A+RE+AWRLIRQL+FN LPLAD+ HR G+QALRD+L LF++A+     RQ+ S
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  540  LVGSRIEPVTRRLPGSGPLIYGRGVQCTLSVDEEGFSGTSPYLLGLVLEHYLARHVSINV  599
            L+G +  PVTRRLPGSG L+YGRGV C L+VDEEGFSG SPYL+GLVLEHY+ARHVSIN 
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  600  FTQTTLESMQRGTVAKWPVRMGGRGIV  626
            F+Q TL+SMQRG V  WPVR G RG V
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

32) bgla_4p2460 in NC_015383


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  696 bits (2634),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 396/630 (63%), Positives = 512/630 (82%), Gaps = 4/630 (0%)

Query  1    MDPRLLDYYNQELIYMRELAAEFAHAHPKIARRLGMQAGEVADPYVERLIESFSFMAARM  60
            MDPRLL+YYN+EL Y+RE +AEFA  HPKIA RLGMQ+ ++ADPYVER+IE+FSF++AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QIKLDAEFPRFTERLLEVIYPNYVAPTPSIGVARLYPGRTEGNLANGYRIARGTAFTARI  120
            Q+K+DAEFPRFT+RLLEV+ PNYV+PTPS++V +LYP+  EG+LA+G  ++R+TAF + I
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PDGERTACQFTSGQDVTLWPLTITEARLTGIPPDIPGLARYVPPDTQVRGALRLRLATTG  180
            P+GE TACQF S+QDVTLWPL+I E RLT+ PPD+P+L RY+PP+ +V GALR+ L T G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  DVRISDLKGLDRLPVYLAGDEQVASHLFELLHVGAIASVIGAPGEFGAPGRPPVAVTENA  240
            ++ +S+L G  RLP YL G+E++ASHLFELLH +A+A++ G PG+F+  G   V + +++
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFD--GELNVNL-QHP  237

Query  241  VEHEGLRTDQNLLPLTWTKFHGHNLLHEYFACPARFWFFALTGLAEGLSRVDGREVEIVV  300
            V HEGL  +Q LLPL+W  FHGHNLLHE+FACP RF FF+ TGL+ GL +V+G   EIV+
Sbjct  238  VAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVI  297

Query  301  LLDRAPAE-LANLVDASRFALFCTPVINLFSKHTDRIEISPRETEFHLVPARLAPLDYEV  359
            LL+R P++ L +  DA++F+LFCTPVINLF++ T RIE++   TE HLV  R  PLDYEV
Sbjct  298  LLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEV  357

Query  360  FSVETVYGRVAATSAELEFRPLYQTLNNDEGNHGRYFSTRRERRLVSDSARRYGTRTPYV  419
            FSV+ V G  A T+  + FRPLY+T NNDEGNHGRYFS RRE R  S+SARRYGTRTPY 
Sbjct  358  FSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYT  417

Query  420  GTEVFLSLVDQNEAPYNENIRFLSVDALLTNRDLATLVPRDGVHDLETAESAPVESIGLI  479
            G+EVFLSLVDQ+EAPY EN+R ++V A++TNRDL+ L+PR+G +DL    + PV ++GLI
Sbjct  418  GSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLI  477

Query  480  RAPSPPLPPYAERDMAWRLIRQLNFNYLPLGDLDHREGGQGLRDLLRLYLADGDSGQGRQ  539
            R+P PP PP AER+MAWRLIRQL+FNYLPL+DLDHR GGQ+LRDLL L+++  DS Q+RQ
Sbjct  478  RPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQ  537

Query  540  VESLVGVKTRPVTRKLPGAGPMTFGRGIECALTVDETGFSGVSPYLFGVILEHWLARHVS  599
            V SL+G KT PVTR+LPG+G + +GRG+ C LTVDE GFSG+SPYLFG++LEH +ARHVS
Sbjct  538  VRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVS  597

Query  600  INSFTQTELHSMQRGRIARWPVRTGTRGAL  629
            IN+F+Q  LHSMQRG++  WPVRTG RG++
Sbjct  598  INTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

33) Rpic12D_1690 in NC_012856


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  687 bits (2599),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 386/627 (62%), Positives = 508/627 (82%), Gaps = 1/627 (0%)

Query  1    MDPQLLDYYNRELVYMRELAGEFARQHPKVAKRLGMHGIEVADPYVERLIEAFCLLSART  60
            MDP+LL+YYNREL Y+RE ++EFA  HPK+A RLGM+G ++ADPYVER+IEAF +LSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QIKLDAEFPRFTQRLLEVVYPNYVAPTPAIAVAQFHPSRTEGDLVRGVPIPRDTALLAKA  120
            Q+K+DAEFPRFTQRLLEVV PNYV+PTP++AV ++ P   EGDL +GV +PRDTA+++  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PPGESTECEFRTTQPLTLRPIEIAEARLTGIPPDIQGLERYVPAQVSVQGALRLRLRLTH  180
            P GE+T C+FR++Q +TL+P+ I E RLT+ PPD+ +L+RY+P+++ V GALR+ LR   
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  DVKFSQLAGLDRLPIYLSGNDQIASHLFELLHSAGCATLIGKPGAMGERPTAVTDNAVSH  240
            ++ FS+LAG  RLP+YL G+++IASHLFELLH+++ ATL G PG  +       +++V+H
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  VGMAPDEGAFPLAWNKFHGHNLVHEYFACPQRFYFFGLNGLARGLSKNDGREAEIVVLLS  300
             G+ P++G +PLAWN FHGHNL+HE+FACP+RFYFF   GL+ GL K +G  AEIV+LL+
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  KAPSA-LVSQVDASQFALFCTPVINLFPMRTDRMEVSPGRTEFHLVADRRRPLDFEVFSV  359
            + P+  L+ Q DA+QF+LFCTPVINLFP  T R+EV+ + TE HLV DR RPLD+EVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  360  QKLSGQVNEHSTPIDFRPLFATLNSDEGNHGRYFSARREPRLFSDQARKYGTRTAYTGTE  419
            Q + G   E +  + FRPL+ T N+DEGNHGRYFS RREPR  S+ AR+YGTRT+YTG+E
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  420  VFLSLVDQNEAPYPNDLRYLSVEAMVTNRDLPNLVPRNGFSDLSSPASIPVEGVGLIRPP  479
            VFLSLVDQ+EAPYP++LR ++V AMVTNRDLP L+PRNG  DL+  A+IPV GVGLIRPP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  480  SAPHAPFAEGEMAWRLIRQLGFNYLSLMDLDHRQGGQGLRDMLRLFVSASDTAQQRQIES  539
             +P++P+AE EMAWRLIRQL+FNYL+L DLDHR GGQ+LRD+L LF++A D++Q RQ+ S
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  540  LIGSKLKPVTRRMPGAGPILYGRGVQCQLTVDEAGFSGVSPYLFGVVLEHFLARHVSVNA  599
            LIG K  PVTRR+PG+G ++YGRGV C+LTVDE GFSG+SPYLFG+VLEH++ARHVS+N+
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  600  FTETELHAMERGLIHRWSPRMGGRNVI  626
            F++  LH+M+RG +  W+ R G R  +
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

34) Bcep18194_B0975 in NC_007511


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  685 bits (2590),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 386/630 (62%), Positives = 500/630 (80%), Gaps = 4/630 (0%)

Query  1    MDPRLLDYYNQELIYMRELAAEFAHAHPKIARRLGMQTGEVADPYVERLIESFSFMAARM  60
            MDPRLL+YYN+EL Y+RE +AEFA  HPKIA RLGMQ  ++ADPYVER+IE+FSF++AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QIKLDAEFPRFTERLLEVTYPNYVAPTPSISIARLYPGQAEGNLVNGYRLARGTSFTAKI  120
            Q+K+DAEFPRFT+RLLEV  PNYV+PTPS+++ +LYP+  EG+L +G  ++R+T+F + I
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PDGERTACQFTNGQDITLWPLTITEARLTGIPPDIPALERYSPPDKQVRGALRIRLATTG  180
            P+GE TACQF ++QD+TLWPL+I E RLT+ PPD+PAL+RY PP+ +V GALRI L T G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  NMRIADLKGLERLPVYLAGDEQVASHLFELLHAGGIASVIGAPGEFGTPGRSLAAVMETA  240
            ++ +++L G  RLP YL G+E++ASHLFELLH++++A++ G PG+F+     L   ++ +
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDG---ELNVNLQHP  237

Query  241  IEHEGLGVDQSLLPLNWAKFHGHNLLHEYFACPARFWFFALNGLAEGFSRVNGREVEIVV  300
            + HEGL  +Q+LLPL W  FHGHNLLHE+FACP RF FF+  GL+ G+ +V+G   EIV+
Sbjct  238  VAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVI  297

Query  301  LLDRAPGP-LANLVDASRFALFCTPVINLFRKHTDRVEISPRDTEFHLVPARLTPLDYEV  359
            LL+R P   L +  DA++F+LFCTPVINLF + T R+E++   TE HLV  R  PLDYEV
Sbjct  298  LLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEV  357

Query  360  FSVRTVYGQVAATSSELEFRPLYQTLNNDEGNHGRYFSVRRERRLLSDSARRYGTRTPYV  419
            FSV+ V G  A T+  + FRPLY+T NNDEGNHGRYFS+RRE R  S+SARRYGTRTPY 
Sbjct  358  FSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYT  417

Query  420  GTEVFLSLVDQAEAPYGENIRFLSVEALLTNRDLATLVPRNGVHDLETAQSAPVDSIGLI  479
            G+EVFLSLVDQ EAPY EN+R ++V A++TNRDL+ L+PRNG +DL    + PV ++GLI
Sbjct  418  GSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLI  477

Query  480  RPPSAPLPPYAEREMAWRLIRQLNFNYLPLEALDHREGGQGLRDLLRLYLVDGDSGQGRQ  539
            RPP +P PP AEREMAWRLIRQL+FNYLPL  LDHR GGQ+LRDLL L++   DS Q+RQ
Sbjct  478  RPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQ  537

Query  540  VESLVGAKTRPVTRKLPGTGPMTFGRGIECALTVDETGFSGVSPYLFGVILEHWLARHVS  599
            V SL+G KT PVTR+LPG+G + +GRG+ C LTVDE GFSG+SPYLFG++LEH +ARHVS
Sbjct  538  VRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVS  597

Query  600  INSFTQTELHSMQRGRIARWPARTGTRGAL  629
            IN+F+Q  LHSMQRG++  WP RTG RG++
Sbjct  598  INTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

35) tssF-2 in NC_017832


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  677 bits (2561),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 381/627 (61%), Positives = 506/627 (81%), Gaps = 1/627 (0%)

Query  1    MDPQFLDHYNRELTYMRELSAEFAAQHPKIARRLGMQGIEVADPYVERLIEAFCFMSART  60
            MDP++L+ YNREL+Y+RE +AEFA+ HPKIA RLGMQG ++ADPYVER+IEAF F+SART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKLEAEFPRFTQRLLEVAYPNYVAPTPSMAVARLRPSLREGDFSKGFKVPRHSMLRSSI  120
            QLK++AEFPRFTQRLLEV  PNYV+PTPSMAV +L P  +EGD++KG  VPR++ + S+I
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PPGEQTACEFRTGQDITLWPIEIAGATLTAVPPDLPDLQRSLLPHTKLRGALRLRVRTVG  180
            P GE+TAC+FR++QD+TLWP+ I    LTA PPD+P L+R L P+  + GALR+ +RT G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  EIRFSQITGLDRLSLYIGGDERIASHLFELIHASSVASVVRAPGAARGEGAVVAKNAVDF  240
            E+ FS+++G  RL++Y+ G+ERIASHLFEL+H+S+VA++   PG   GE  V  +++V  
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  EGLSPDQSLLPLVWNTFHGHNLLHEYFTCRQRFYFFALTQLNAGLSRIDGKEAEIVLLLD  300
            EGL P+Q+LLPL WN FHGHNLLHE+F+C +RFYFF+ T L+AGL +++G+ AEIV+LL+
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPDE-LVTHVEAARFLLFCAPIVNLFPKRTDRVEINRAQTAFHLIPDRTRPLDYEVFSV  359
            RLP + L+ + +AA+F LFC+P++NLFP+ T R+E+ ++ T  HL+ DRTRPLDYEVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  360  SRVFGQKAETSTEVTFNPLYQTLHSDIGNYGRYFSILREPRTTSTNARKYGTRTPYVGTE  419
              V G  AET+  + F PLY+T ++D GN GRYFS+ REPR +S +AR+YGTRTPY G+E
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  420  VYVSLVDQAEAPYADDIRYLSVDAWVTNRDLPRLIPRNGVNDLTMQDSVPIEGVSLVHPP  479
            V++SLVDQ EAPY++++R ++V A VTNRDLP LIPRNG +DLT++ ++P+ GV+L++PP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  480  SAPREPYATGETAWRLIRQLSFNYMPLAELDHRDGGQALRNMLRLFVGTSEREQATQIDS  539
             +P+ P A  E AWRLIRQLSFNY+PLA+LDHR GGQALR++L LF+ + +  Q+ Q+ S
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  540  LVGARTEPVVRRLPGHGLLVYGRGVRCELTVDESGFSGLSPYLFGLVLEQYLTRHVSINV  599
            L+G +T PV RRLPG GLLVYGRGV CELTVDE GFSG+SPYLFGLVLE+Y++RHVSIN 
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  600  FTETELRSMQRGLVTRWKPRMGGRGAV  626
            F++  L+SMQRG V  W  R G RG+V
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

36) BURPS1106A_A0150 in NC_009078


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  677 bits (2561),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 381/627 (61%), Positives = 506/627 (81%), Gaps = 1/627 (0%)

Query  1    MDPQFLDHYNRELTYMRELSAEFAAQHPKIARRLGMQGIEVADPYVERLIEAFCFMSART  60
            MDP++L+ YNREL+Y+RE +AEFA+ HPKIA RLGMQG ++ADPYVER+IEAF F+SART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKLEAEFPRFTQRLLEVAYPNYVAPTPSMAVARLRPSLREGDFSKGFKVPRHSMLRSSI  120
            QLK++AEFPRFTQRLLEV  PNYV+PTPSMAV +L P  +EGD++KG  VPR++ + S+I
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PPGEQTACEFRTGQDITLWPIEIAGATLTAVPPDLPDLQRSLLPHTKLRGALRLRVRTVG  180
            P GE+TAC+FR++QD+TLWP+ I    LTA PPD+P L+R L P+  + GALR+ +RT G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  EIRFSQITGLDRLSLYIGGDERIASHLFELIHASSVASVVRAPGAARGEGAVVAKNAVDF  240
            E+ FS+++G  RL++Y+ G+ERIASHLFEL+H+S+VA++   PG   GE  V  +++V  
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  EGLSPDQSLLPLVWNTFHGHNLLHEYFTCRQRFYFFALTQLNAGLSRIDGKEAEIVLLLD  300
            EGL P+Q+LLPL WN FHGHNLLHE+F+C +RFYFF+ T L+AGL +++G+ AEIV+LL+
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPDE-LVTHVEAARFLLFCAPIVNLFPKRTDRVEINRAQTAFHLIPDRTRPLDYEVFSV  359
            RLP + L+ + +AA+F LFC+P++NLFP+ T R+E+ ++ T  HL+ DRTRPLDYEVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  360  SRVFGQKAETSTEVTFNPLYQTLHSDIGNYGRYFSILREPRTTSTNARKYGTRTPYVGTE  419
              V G  AET+  + F PLY+T ++D GN GRYFS+ REPR +S +AR+YGTRTPY G+E
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  420  VYVSLVDQAEAPYADDIRYLSVDAWVTNRDLPRLIPRNGVNDLTMQDSVPIEGVSLVHPP  479
            V++SLVDQ EAPY++++R ++V A VTNRDLP LIPRNG +DLT++ ++P+ GV+L++PP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  480  SAPREPYATGETAWRLIRQLSFNYMPLAELDHRDGGQALRNMLRLFVGTSEREQATQIDS  539
             +P+ P A  E AWRLIRQLSFNY+PLA+LDHR GGQALR++L LF+ + +  Q+ Q+ S
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  540  LVGARTEPVVRRLPGHGLLVYGRGVRCELTVDESGFSGLSPYLFGLVLEQYLTRHVSINV  599
            L+G +T PV RRLPG GLLVYGRGV CELTVDE GFSG+SPYLFGLVLE+Y++RHVSIN 
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  600  FTETELRSMQRGLVTRWKPRMGGRGAV  626
            F++  L+SMQRG V  W  R G RG+V
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

37) BURPS1710b_A1621 in NC_007435


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  677 bits (2561),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 381/627 (61%), Positives = 506/627 (81%), Gaps = 1/627 (0%)

Query  1    MDPQFLDHYNRELTYMRELSAEFAAQHPKIARRLGMQGIEVADPYVERLIEAFCFMSART  60
            MDP++L+ YNREL+Y+RE +AEFA+ HPKIA RLGMQG ++ADPYVER+IEAF F+SART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKLEAEFPRFTQRLLEVAYPNYVAPTPSMAVARLRPSLREGDFSKGFKVPRHSMLRSSI  120
            QLK++AEFPRFTQRLLEV  PNYV+PTPSMAV +L P  +EGD++KG  VPR++ + S+I
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PPGEQTACEFRTGQDITLWPIEIAGATLTAVPPDLPDLQRSLLPHTKLRGALRLRVRTVG  180
            P GE+TAC+FR++QD+TLWP+ I    LTA PPD+P L+R L P+  + GALR+ +RT G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  EIRFSQITGLDRLSLYIGGDERIASHLFELIHASSVASVVRAPGAARGEGAVVAKNAVDF  240
            E+ FS+++G  RL++Y+ G+ERIASHLFEL+H+S+VA++   PG   GE  V  +++V  
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  EGLSPDQSLLPLVWNTFHGHNLLHEYFTCRQRFYFFALTQLNAGLSRIDGKEAEIVLLLD  300
            EGL P+Q+LLPL WN FHGHNLLHE+F+C +RFYFF+ T L+AGL +++G+ AEIV+LL+
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPDE-LVTHVEAARFLLFCAPIVNLFPKRTDRVEINRAQTAFHLIPDRTRPLDYEVFSV  359
            RLP + L+ + +AA+F LFC+P++NLFP+ T R+E+ ++ T  HL+ DRTRPLDYEVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  360  SRVFGQKAETSTEVTFNPLYQTLHSDIGNYGRYFSILREPRTTSTNARKYGTRTPYVGTE  419
              V G  AET+  + F PLY+T ++D GN GRYFS+ REPR +S +AR+YGTRTPY G+E
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  420  VYVSLVDQAEAPYADDIRYLSVDAWVTNRDLPRLIPRNGVNDLTMQDSVPIEGVSLVHPP  479
            V++SLVDQ EAPY++++R ++V A VTNRDLP LIPRNG +DLT++ ++P+ GV+L++PP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  480  SAPREPYATGETAWRLIRQLSFNYMPLAELDHRDGGQALRNMLRLFVGTSEREQATQIDS  539
             +P+ P A  E AWRLIRQLSFNY+PLA+LDHR GGQALR++L LF+ + +  Q+ Q+ S
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  540  LVGARTEPVVRRLPGHGLLVYGRGVRCELTVDESGFSGLSPYLFGLVLEQYLTRHVSINV  599
            L+G +T PV RRLPG GLLVYGRGV CELTVDE GFSG+SPYLFGLVLE+Y++RHVSIN 
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  600  FTETELRSMQRGLVTRWKPRMGGRGAV  626
            F++  L+SMQRG V  W  R G RG+V
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

38) BPC006_II0145 in NC_018529


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  677 bits (2561),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 381/627 (61%), Positives = 506/627 (81%), Gaps = 1/627 (0%)

Query  1    MDPQFLDHYNRELTYMRELSAEFAAQHPKIARRLGMQGIEVADPYVERLIEAFCFMSART  60
            MDP++L+ YNREL+Y+RE +AEFA+ HPKIA RLGMQG ++ADPYVER+IEAF F+SART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKLEAEFPRFTQRLLEVAYPNYVAPTPSMAVARLRPSLREGDFSKGFKVPRHSMLRSSI  120
            QLK++AEFPRFTQRLLEV  PNYV+PTPSMAV +L P  +EGD++KG  VPR++ + S+I
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PPGEQTACEFRTGQDITLWPIEIAGATLTAVPPDLPDLQRSLLPHTKLRGALRLRVRTVG  180
            P GE+TAC+FR++QD+TLWP+ I    LTA PPD+P L+R L P+  + GALR+ +RT G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  EIRFSQITGLDRLSLYIGGDERIASHLFELIHASSVASVVRAPGAARGEGAVVAKNAVDF  240
            E+ FS+++G  RL++Y+ G+ERIASHLFEL+H+S+VA++   PG   GE  V  +++V  
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  EGLSPDQSLLPLVWNTFHGHNLLHEYFTCRQRFYFFALTQLNAGLSRIDGKEAEIVLLLD  300
            EGL P+Q+LLPL WN FHGHNLLHE+F+C +RFYFF+ T L+AGL +++G+ AEIV+LL+
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPDE-LVTHVEAARFLLFCAPIVNLFPKRTDRVEINRAQTAFHLIPDRTRPLDYEVFSV  359
            RLP + L+ + +AA+F LFC+P++NLFP+ T R+E+ ++ T  HL+ DRTRPLDYEVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  360  SRVFGQKAETSTEVTFNPLYQTLHSDIGNYGRYFSILREPRTTSTNARKYGTRTPYVGTE  419
              V G  AET+  + F PLY+T ++D GN GRYFS+ REPR +S +AR+YGTRTPY G+E
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  420  VYVSLVDQAEAPYADDIRYLSVDAWVTNRDLPRLIPRNGVNDLTMQDSVPIEGVSLVHPP  479
            V++SLVDQ EAPY++++R ++V A VTNRDLP LIPRNG +DLT++ ++P+ GV+L++PP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  480  SAPREPYATGETAWRLIRQLSFNYMPLAELDHRDGGQALRNMLRLFVGTSEREQATQIDS  539
             +P+ P A  E AWRLIRQLSFNY+PLA+LDHR GGQALR++L LF+ + +  Q+ Q+ S
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  540  LVGARTEPVVRRLPGHGLLVYGRGVRCELTVDESGFSGLSPYLFGLVLEQYLTRHVSINV  599
            L+G +T PV RRLPG GLLVYGRGV CELTVDE GFSG+SPYLFGLVLE+Y++RHVSIN 
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  600  FTETELRSMQRGLVTRWKPRMGGRGAV  626
            F++  L+SMQRG V  W  R G RG+V
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

39) BPSS0112 in NC_006351


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  677 bits (2561),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 381/627 (61%), Positives = 506/627 (81%), Gaps = 1/627 (0%)

Query  1    MDPQFLDHYNRELTYMRELSAEFAAQHPKIARRLGMQGIEVADPYVERLIEAFCFMSART  60
            MDP++L+ YNREL+Y+RE +AEFA+ HPKIA RLGMQG ++ADPYVER+IEAF F+SART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKLEAEFPRFTQRLLEVAYPNYVAPTPSMAVARLRPSLREGDFSKGFKVPRHSMLRSSI  120
            QLK++AEFPRFTQRLLEV  PNYV+PTPSMAV +L P  +EGD++KG  VPR++ + S+I
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PPGEQTACEFRTGQDITLWPIEIAGATLTAVPPDLPDLQRSLLPHTKLRGALRLRVRTVG  180
            P GE+TAC+FR++QD+TLWP+ I    LTA PPD+P L+R L P+  + GALR+ +RT G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  EIRFSQITGLDRLSLYIGGDERIASHLFELIHASSVASVVRAPGAARGEGAVVAKNAVDF  240
            E+ FS+++G  RL++Y+ G+ERIASHLFEL+H+S+VA++   PG   GE  V  +++V  
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  EGLSPDQSLLPLVWNTFHGHNLLHEYFTCRQRFYFFALTQLNAGLSRIDGKEAEIVLLLD  300
            EGL P+Q+LLPL WN FHGHNLLHE+F+C +RFYFF+ T L+AGL +++G+ AEIV+LL+
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPDE-LVTHVEAARFLLFCAPIVNLFPKRTDRVEINRAQTAFHLIPDRTRPLDYEVFSV  359
            RLP + L+ + +AA+F LFC+P++NLFP+ T R+E+ ++ T  HL+ DRTRPLDYEVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  360  SRVFGQKAETSTEVTFNPLYQTLHSDIGNYGRYFSILREPRTTSTNARKYGTRTPYVGTE  419
              V G  AET+  + F PLY+T ++D GN GRYFS+ REPR +S +AR+YGTRTPY G+E
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  420  VYVSLVDQAEAPYADDIRYLSVDAWVTNRDLPRLIPRNGVNDLTMQDSVPIEGVSLVHPP  479
            V++SLVDQ EAPY++++R ++V A VTNRDLP LIPRNG +DLT++ ++P+ GV+L++PP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  480  SAPREPYATGETAWRLIRQLSFNYMPLAELDHRDGGQALRNMLRLFVGTSEREQATQIDS  539
             +P+ P A  E AWRLIRQLSFNY+PLA+LDHR GGQALR++L LF+ + +  Q+ Q+ S
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  540  LVGARTEPVVRRLPGHGLLVYGRGVRCELTVDESGFSGLSPYLFGLVLEQYLTRHVSINV  599
            L+G +T PV RRLPG GLLVYGRGV CELTVDE GFSG+SPYLFGLVLE+Y++RHVSIN 
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  600  FTETELRSMQRGLVTRWKPRMGGRGAV  626
            F++  L+SMQRG V  W  R G RG+V
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

40) BDL_5948 in NC_021877


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  677 bits (2561),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 381/627 (61%), Positives = 506/627 (81%), Gaps = 1/627 (0%)

Query  1    MDPQFLDHYNRELTYMRELSAEFAAQHPKIARRLGMQGIEVADPYVERLIEAFCFMSART  60
            MDP++L+ YNREL+Y+RE +AEFA+ HPKIA RLGMQG ++ADPYVER+IEAF F+SART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKLEAEFPRFTQRLLEVAYPNYVAPTPSMAVARLRPSLREGDFSKGFKVPRHSMLRSSI  120
            QLK++AEFPRFTQRLLEV  PNYV+PTPSMAV +L P  +EGD++KG  VPR++ + S+I
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PPGEQTACEFRTGQDITLWPIEIAGATLTAVPPDLPDLQRSLLPHTKLRGALRLRVRTVG  180
            P GE+TAC+FR++QD+TLWP+ I    LTA PPD+P L+R L P+  + GALR+ +RT G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  EIRFSQITGLDRLSLYIGGDERIASHLFELIHASSVASVVRAPGAARGEGAVVAKNAVDF  240
            E+ FS+++G  RL++Y+ G+ERIASHLFEL+H+S+VA++   PG   GE  V  +++V  
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  EGLSPDQSLLPLVWNTFHGHNLLHEYFTCRQRFYFFALTQLNAGLSRIDGKEAEIVLLLD  300
            EGL P+Q+LLPL WN FHGHNLLHE+F+C +RFYFF+ T L+AGL +++G+ AEIV+LL+
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPDE-LVTHVEAARFLLFCAPIVNLFPKRTDRVEINRAQTAFHLIPDRTRPLDYEVFSV  359
            RLP + L+ + +AA+F LFC+P++NLFP+ T R+E+ ++ T  HL+ DRTRPLDYEVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  360  SRVFGQKAETSTEVTFNPLYQTLHSDIGNYGRYFSILREPRTTSTNARKYGTRTPYVGTE  419
              V G  AET+  + F PLY+T ++D GN GRYFS+ REPR +S +AR+YGTRTPY G+E
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  420  VYVSLVDQAEAPYADDIRYLSVDAWVTNRDLPRLIPRNGVNDLTMQDSVPIEGVSLVHPP  479
            V++SLVDQ EAPY++++R ++V A VTNRDLP LIPRNG +DLT++ ++P+ GV+L++PP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  480  SAPREPYATGETAWRLIRQLSFNYMPLAELDHRDGGQALRNMLRLFVGTSEREQATQIDS  539
             +P+ P A  E AWRLIRQLSFNY+PLA+LDHR GGQALR++L LF+ + +  Q+ Q+ S
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  540  LVGARTEPVVRRLPGHGLLVYGRGVRCELTVDESGFSGLSPYLFGLVLEQYLTRHVSINV  599
            L+G +T PV RRLPG GLLVYGRGV CELTVDE GFSG+SPYLFGLVLE+Y++RHVSIN 
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  600  FTETELRSMQRGLVTRWKPRMGGRGAV  626
            F++  L+SMQRG V  W  R G RG+V
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

41) BURPS668_A0172 in NC_009075


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  676 bits (2556),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 380/627 (61%), Positives = 506/627 (81%), Gaps = 1/627 (0%)

Query  1    MDPQFLDHYNRELTYMRELSAEFAAQHPKIARRLGMQGIEVADPYVERLIEAFCFMSART  60
            MDP++L+ YNREL+Y+RE +AEFA+ HPKIA RLGMQG ++ADPYVER+IEAF F+SART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKLEAEFPRFTQRLLEVAYPNYVAPTPSMAVARLRPSLREGDFSKGFKVPRHSMLRSSI  120
            QLK++AEFPRFTQRLLEV  PNYV+PTPSMAV +L P  +EGD++KG  VPR++ + S+I
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PPGEQTACEFRTGQDITLWPIEIAGATLTAVPPDLPDLQRSLLPHTKLRGALRLRVRTVG  180
            P GE+TAC+FR++QD+TLWP+ I    LTA PPD+P L+R L P+  + GALR+ +RT G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  EIRFSQITGLDRLSLYIGGDERIASHLFELIHASSVASVVRAPGAARSEGAVVAKNAVDF  240
            E+ FS+++G  RL++Y+ G+ERIASHLFEL+H+S+VA++   PG   +E  V  +++V  
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  EGLSPDQSLLPLVWNTFHGHNLLHEYFTCRQRFYFFALTQLNAGLSRIDGKEAEIVLLLD  300
            EGL P+Q+LLPL WN FHGHNLLHE+F+C +RFYFF+ T L+AGL +++G+ AEIV+LL+
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPDE-LVTHVEAARFLLFCAPIVNLFPKRTDRVEINRAQTAFHLIPDRTRPLDYEVFSV  359
            RLP + L+ + +AA+F LFC+P++NLFP+ T R+E+ ++ T  HL+ DRTRPLDYEVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  360  SRVFGQKAETSTEVTFNPLYQTLHSDIGNYGRYFSILREPRTTSTNARKYGTRTPYVGTE  419
              V G  AET+  + F PLY+T ++D GN GRYFS+ REPR +S +AR+YGTRTPY G+E
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  420  VYVSLVDQAEAPYADDIRYLSVDAWVTNRDLPRLIPRNGVNDLTMQDSVPIEGVSLVHPP  479
            V++SLVDQ EAPY++++R ++V A VTNRDLP LIPRNG +DLT++ ++P+ GV+L++PP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  480  SAPREPYATGETAWRLIRQLSFNYMPLAELDHRDGGQALRNMLRLFVGTSEREQATQIDS  539
             +P+ P A  E AWRLIRQLSFNY+PLA+LDHR GGQALR++L LF+ + +  Q+ Q+ S
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  540  LVGARTEPVVRRLPGHGLLVYGRGVRCELTVDESGFSGLSPYLFGLVLEQYLTRHVSINV  599
            L+G +T PV RRLPG GLLVYGRGV CELTVDE GFSG+SPYLFGLVLE+Y++RHVSIN 
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  600  FTETELRSMQRGLVTRWKPRMGGRGAV  626
            F++  L+SMQRG V  W  R G RG+V
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

42) BTH_II0136 in NC_007650


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  675 bits (2553),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 381/627 (61%), Positives = 505/627 (81%), Gaps = 1/627 (0%)

Query  1    MDPQFLDHYNRELTYMRELSAEFAAQHPKIARRLGMQGIEVADPYVERLIEAFCFMSART  60
            MDP++L+ YNREL+Y+RE +AEFA+ HPKIA RLGMQG ++ADPYVER+IEAF F+SART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKLEAEFPRFTQRLLEVTYPNYVAPTPSMAVARLRPSLREGDFSKGFKVPRHSMLRSSI  120
            QLK++AEFPRFTQRLLEV  PNYV+PTPSMAV +L P  +EGD++KG  VPR++ + S+I
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PPGEQTACEFRTGQDITLWPIEIAGATLTAVPPDLPDLQRSLLPHTKLRGALRLRVRTVG  180
            P GE+TAC+FR++QD+TLWP+ I    LTA PPD+P L+R L P+  + GALR+ +RT G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  EIKFSQIAGLDRLSLYIGGDERIASHLFELIHASSVASVVRAQGAARGEGVVVAKNAVDF  240
            E+ FS++AG  RL++Y+ G+ERIASHLFEL+H+S+VA++    G   GE  V  +++V  
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  EGLSPDQSLLPLVWNTFHGHNLLHEYFTCRQRFYFFALTQLNAGLSRIDGKEAEIVLLLD  300
            EGL P+Q+LLPL WN FHGHNLLHE+F+C +RFYFF+ T L+AGL +++G+ AEIV+LL+
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPDE-LVTHVEAARFLLFCAPIVNLFPKRTDRVEINRAQTAFHLIPDRTRPLDYEVFSV  359
            RLP + L+ + +AA+F LFC+P++NLFP+ T R+E+ ++ T  HL+ DRTRPLDYEVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  360  SRVFGQKAETSTEVTFNPLYQTLHSDIGNYGRYFSILREPRTTSTNARKYGTRTPYVGTE  419
              V G  AET+  + F PLY+T ++D GN GRYFS+ REPR +S +AR+YGTRTPY G+E
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  420  VYVSLVDQAEAPYADDIRYLSVDAWVTNRDLPRLIPRNGVNDLTMQDSVPIEGVSLVHPP  479
            V++SLVDQ EAPY++++R ++V A VTNRDLP LIPRNG +DLT++ ++P+ GV+L++PP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  480  SAPREPYATGETAWRLIRQLSFNYMPLAELDHRDGGQALRNMLRLFVGTSEREQATQIDS  539
             +P+ P A  E AWRLIRQLSFNY+PLA+LDHR GGQALR++L LF+ + +  Q+ Q+ S
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  540  LVGARTEPVVRRLPGHGLLVYGRGVRCELTVDESGFSGLSPYLFGLVLEQYLTRHVSINV  599
            L+G +T PV RRLPG GLLVYGRGV CELTVDE GFSG+SPYLFGLVLE+Y++RHVSIN 
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  600  FTETELRSMQRGLVTRWKPRMGGRGAV  626
            F++  L+SMQRG V  W  R G RG+V
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

43) BRPE64_ACDS03390 in NC_021287


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  673 bits (2546),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 386/631 (62%), Positives = 499/631 (80%), Gaps = 5/631 (0%)

Query  1    MDPRLLDYYNQELIYMRELGAEFAQAHPKIARRLGMQAGEVADPYVERLIESFCFMAART  60
            MDPRLL+YYN+EL Y+RE GAEFA  HPKIA RLGMQ+ ++ADPYVER+IE+F F++ART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKLDAEFPRFTGRLLEVVYPNYVAPTPSIAVAQVFPGGQAGNLVKGYDVPRGTRFTASA  120
            QLK+DAEFPRFT RLLEVV PNYV+PTPS+AV +++P+ Q G+L KG  VPR+T F ++ 
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PKGEKTECTFTTGHDVKMWPVRITEARLTGVPPDIPSLGRYVPPDRQVRGALRLTLATTG  180
            P GE+T C F +++DV +WP+ I E RLT+ PPD+P+L RY+PP+ +V GALR+TL T G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  DFGFSEIKGLDRLPVYLAGDEQVASHLYELVHASSLAAAIAPPGMFGSATTRPSFVTEGA  240
            +++FSE+ G  RLP YL G+E++ASHL+EL+H+S++A+  + PG F++     +   + +
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGEL---NVNLQHP  237

Query  241  VEHDGLRADQNLLPLTWTKFHGHNLLHEYFACPARFLFFALNGLAEGLSRIGGREAEIVI  300
            V H+GL ++Q LLPL+W  FHGHNLLHE+FACP RF FF+  GL+ GL ++ G  AEIVI
Sbjct  238  VAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVI  297

Query  301  LLDRAPGH-LANLVDAARFALFCTPIINLFEKRTDRVTLTPGETECHVVPARLLPLDYEV  359
            LL+R P + L +  DAA+F+LFCTP+INLF + T R+ +T + TE H+V  R  PLDYEV
Sbjct  298  LLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEV  357

Query  360  FSVQTVYGQVEVDSVELPFRPLYQTLNNDEGNHGRYFSTRRERRLHSDSSRRYGTRTPYI  419
            FSVQ V G     +  + FRPLY+T NNDEGNHGRYFS RRE R  S+S+RRYGTRTPY 
Sbjct  358  FSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYT  417

Query  420  GTEMFLSLVDQKEAPYPEGIRYISVDALVTNRDLATLVPRNGVTDLTADKASGPIASIGL  479
            G+E+FLSLVDQ EAPYPE +R I+V A+VTNRDL+ L+PRNG  DLT D A+ P+A++GL
Sbjct  418  GSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVD-AAIPVAGVGL  476

Query  480  IRAPSAPRPPYADREMAWRLIRQLNFNYLALEDQDHRPGGQALRDLLRLYVMDDDTDHQR  539
            IR+P +P+PP A+REMAWRLIRQL+FNYL+L D DHR GGQALRDLL L++  +D+ + R
Sbjct  477  IRPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSR  536

Query  540  QIEGLVGVKTRPVTRKLSGKGPMTFGRGIECALTIDETGFSGISPYLFGLILEHWLARHV  599
            Q+ +L+G KT PVTR+L+G G + +GRG+ C LT+DE GFSGISPYLFGL+LEH +ARHV
Sbjct  537  QVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHV  596

Query  600  SINSFTQTELHSMQRGKVMTWPVRTGTRGVV  630
            SIN+F+Q  LHSMQRG VMTWPVRTG RG V
Sbjct  597  SINTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

44) Bmul_3903 in NC_010086


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  671 bits (2536),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 383/628 (61%), Positives = 492/628 (79%), Gaps = 4/628 (0%)

Query  1    MDPRLLDYYNQELIYMRELAAEFAHAHPKIARRLGMQAGEVADPYVERLIESFSFMAARM  60
            MDPRLL+YYN+EL Y+RE +AEFA  HPKIA RLGMQ+ ++ADPYVER+IE+FSF++AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKLDAEFPRFTERLLEVIYPNYVAPTPSISIARLYPGQTEGSLVDGYRLPRGTTFTAQV  120
            QLK+DAEFPRFT+RLLEV+ PNYV+PTPS+++ +LYP+  EG L  G  +PR+T+F + +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PDGERTACRFTSGQDVTLWPLAITDARLTGIPPDIPALARYSAPDTPVRGALRIRLATTG  180
            P+GE TAC+F S+QDVTLWPL+I + RLT+ PPD+PAL RY +P+  V GALRI L T G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  NVRIADLKGLDRLPVYLAGDEQVASHLFELLHAGAIASVIGAPGEFGRPGRSPAAVTERA  240
            ++ +++L G  RLP YL G+E++ASHLFELLH++A+A++ G PG+F+  G     + +++
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFD--GELNVNL-QHP  237

Query  241  VEHEGLGTDQSLLPLNWAKFHGHNLLHEYFACPARFWFFALNGLAEGFSRIDGREVEIVV  300
            V HEGL  +Q+LLPL W  FHGHNLLHE+FACP RF FF+  GL+ G+ +++G   EIV+
Sbjct  238  VAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVI  297

Query  301  LLDRAPGP-LANLVDASRFALFCTPVVNLFRKHTDRVEISPRDTEFHLVPARLTPLDYEV  359
            LL+R P   L +  DA++F+LFCTPV+NLF + T R+E++   TE HLV  R  PLDYEV
Sbjct  298  LLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEV  357

Query  360  FSVSAVYGQVAATSSELEFRPLYQTLNNDEGNHGRYFSVRRERRLLSDSARRYGTRTPYV  419
            FSV  V G  A T+  + FRPLY+T NNDEGNHGRYFS+RRE R  S+SARRYGTRTPY 
Sbjct  358  FSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYT  417

Query  420  GTEVFLSLVDQAEAPYGENIRFLSVDALLTNRDLATLVPRDGVRDLETAQSAPVDSIGLI  479
            G+EVFLSLVDQ EAPY EN+R ++V A++TNRDL+ L+PR+G  DL    + PV ++GLI
Sbjct  418  GSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLI  477

Query  480  RPPSAPLPPYAERETAWRLIRQLNFDHLPLEALDHREGGQGLRDLLRLYLVDGDSGQSRQ  539
            RPP +P PP AERE AWRLIRQL+F+ LPL  LDHR GGQ+LRDLL L++   DS QSRQ
Sbjct  478  RPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQ  537

Query  540  VESLVGAKTRPVTRKLPGTGPMTFGRGIECTLTVDETGFSGVSPYLFGTILEHWLARHVS  599
            V SL+G KT PVTR+LPG+G + +GRG+ C LTVDE GFSG+SPYLFG +LEH +ARHVS
Sbjct  538  VRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVS  597

Query  600  INSFTQTELHSMQRGRIARWPARTGTRG  627
            IN+F+Q  LHSMQRG++  WP RTG RG
Sbjct  598  INTFSQMTLHSMQRGHVMTWPVRTGQRG  625

45) BMULJ_04598 in NC_010805


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  671 bits (2536),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 383/628 (61%), Positives = 492/628 (79%), Gaps = 4/628 (0%)

Query  1    MDPRLLDYYNQELIYMRELAAEFAHAHPKIARRLGMQAGEVADPYVERLIESFSFMAARM  60
            MDPRLL+YYN+EL Y+RE +AEFA  HPKIA RLGMQ+ ++ADPYVER+IE+FSF++AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKLDAEFPRFTERLLEVIYPNYVAPTPSISIARLYPGQTEGSLVDGYRLPRGTTFTAQV  120
            QLK+DAEFPRFT+RLLEV+ PNYV+PTPS+++ +LYP+  EG L  G  +PR+T+F + +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PDGERTACRFTSGQDVTLWPLAITDARLTGIPPDIPALARYSAPDTPVRGALRIRLATTG  180
            P+GE TAC+F S+QDVTLWPL+I + RLT+ PPD+PAL RY +P+  V GALRI L T G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  NVRIADLKGLDRLPVYLAGDEQVASHLFELLHAGAIASVIGAPGEFGRPGRSPAAVTERA  240
            ++ +++L G  RLP YL G+E++ASHLFELLH++A+A++ G PG+F+  G     + +++
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFD--GELNVNL-QHP  237

Query  241  VEHEGLGTDQSLLPLNWAKFHGHNLLHEYFACPARFWFFALNGLAEGFSRIDGREVEIVV  300
            V HEGL  +Q+LLPL W  FHGHNLLHE+FACP RF FF+  GL+ G+ +++G   EIV+
Sbjct  238  VAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVI  297

Query  301  LLDRAPGP-LANLVDASRFALFCTPVVNLFRKHTDRVEISPRDTEFHLVPARLTPLDYEV  359
            LL+R P   L +  DA++F+LFCTPV+NLF + T R+E++   TE HLV  R  PLDYEV
Sbjct  298  LLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEV  357

Query  360  FSVSAVYGQVAATSSELEFRPLYQTLNNDEGNHGRYFSVRRERRLLSDSARRYGTRTPYV  419
            FSV  V G  A T+  + FRPLY+T NNDEGNHGRYFS+RRE R  S+SARRYGTRTPY 
Sbjct  358  FSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYT  417

Query  420  GTEVFLSLVDQAEAPYGENIRFLSVDALLTNRDLATLVPRDGVRDLETAQSAPVDSIGLI  479
            G+EVFLSLVDQ EAPY EN+R ++V A++TNRDL+ L+PR+G  DL    + PV ++GLI
Sbjct  418  GSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLI  477

Query  480  RPPSAPLPPYAERETAWRLIRQLNFDHLPLEALDHREGGQGLRDLLRLYLVDGDSGQSRQ  539
            RPP +P PP AERE AWRLIRQL+F+ LPL  LDHR GGQ+LRDLL L++   DS QSRQ
Sbjct  478  RPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQ  537

Query  540  VESLVGAKTRPVTRKLPGTGPMTFGRGIECTLTVDETGFSGVSPYLFGTILEHWLARHVS  599
            V SL+G KT PVTR+LPG+G + +GRG+ C LTVDE GFSG+SPYLFG +LEH +ARHVS
Sbjct  538  VRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVS  597

Query  600  INSFTQTELHSMQRGRIARWPARTGTRG  627
            IN+F+Q  LHSMQRG++  WP RTG RG
Sbjct  598  INTFSQMTLHSMQRGHVMTWPVRTGQRG  625

46) sciC in NC_010528


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  671 bits (2536),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 378/627 (61%), Positives = 500/627 (80%), Gaps = 1/627 (0%)

Query  1    MDPQLLDYYNRELVYMRELAGEFARQHPKVARRLGMQGIEVADPYVERLIEAFCFLSART  60
            MDP+LL+YYNREL Y+RE ++EFA  HPK+A RLGMQG ++ADPYVER+IEAF FLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   EIKLDAEFPRFTQRLLEVIYPNYVAPTPSIAVAQFHPSRGEGDFAHGVEVPRGTEVNAAA  120
            ++K+DAEFPRFTQRLLEV+ PNYV+PTPS+AV ++ P   EGD+A GV VPR+T   ++ 
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  APGEKTACQFRTTQPLILWPLEITEARLTGIPPDVRGPERYVPAHVTVQGALRLRLRCTR  180
            + GE+TACQFR++Q + LWPL I E RLT+ PPD+ + +RY+P+++ V GALR+ LR   
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  DATFDQLPGLDHLPVYLRGDDLIASQLFELLHSAGVATLIGEPGTMSERPCAVTQDAVSY  240
            + +F +L+G  +LP YL G++ IAS+LFELLH+++VATL GEPG          Q++V+ 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  VGMGPGEGALPLQWNSFHGHNLLHEYFACPQRFYFFGLNQLAEGLSRIRGKEAEIVVLLS  300
             G+ PG+G LPL WN FHGHNLLHE+FACP+RFYFF    L+ GL +++G+ AEIV+LL+
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  KPPGD-LTSKVDRDQFALYCTPVVNLFPKRTDRIEVTPGRAEFHLVADRQHPLDYEIYAV  359
            + P D L  + D  QF+L+CTPV+NLFP+ T RIEVT + +E HLV DR +PLDYE+++V
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  360  RQLSGQKSQHSAGLDFQPLFATLNSDEGNHGRYFSVRRERRLISEQARKYGTRTAYVGTE  419
            +++ G  ++ +  + F+PL+ T N+DEGNHGRYFS+RRE R  SE AR+YGTRT+Y G+E
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  420  LFVSLVDQHEAPYPDALRYLSVESLVTNRDLPNLVPRNGRHDLTPAASIPVDGIGLIRPP  479
            +F+SLVDQHEAPYP+ LR ++V ++VTNRDLP L+PRNGR+DLT  A+IPV G+GLIRPP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  480  SAPRPPYADGEMAWRLIRLLGFNYLSLTDLEHRSGGQGLRDMLRLFVANDDLTHQGQIRS  539
             +P+PP A+ EMAWRLIR L+FNYL+L+DL+HR+GGQ+LRD+L LF++ +D  +  Q+RS
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  540  LIGANVKPVMRRLPGNGPLIYGRGIQCQLTVDEGGFSGISPYLFGVVLEHWLARHVSVNV  599
            LIG +  PV RRLPG+G L+YGRG+ C+LTVDE GFSGISPYLFG+VLEH +ARHVS+N 
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  600  FTQTELHSMQRGLVHRWPVRMGGRGAV  626
            F+Q  LHSMQRG V  WPVR G RG+V
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

47) BC1002_6240 in NC_014119


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  668 bits (2524),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 380/627 (61%), Positives = 506/627 (81%), Gaps = 1/627 (0%)

Query  1    MDPQFLDYYSRELTYMREMAGEFAAQHPKIARRLGMEGIDVADPYVERLIEAFCFMSART  60
            MDP++L+YY+REL+Y+RE ++EFA+ HPKIA RLGM+G D+ADPYVER+IEAF F+SART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QIKLDAEFPRFTQRLLEVIYPNYVAPTPAIAVAQLRPSLREGDFTKGLKVPRHSMLRSAI  120
            Q+K+DAEFPRFTQRLLEV+ PNYV+PTP++AV +L P  +EGD++KG+ VPR++ + S+I
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PPGEQTACEFRSSQDVMLWPIDIVEARLTAVPPDIPDTDRHLLPHMQLHGALRLRLRTTG  180
            P GE+TAC+FRSSQDV LWP+ I E RLTA PPD+P  +R L P++++ GALR+ LRT G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  EVKFNQMTNFDRLPIYIGGDERIASHLFELIHAGSVASVVRAYGASRDEGHVVAKTPVDF  240
            E+ F++++   RLP+Y+ G+ERIASHLFEL+H+++VA++    G   +E +V  + PV  
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  EGLQAEQCLLPLTWNTFHGHNLLQEYFACRQRFYFFALTQLAAGLARVDSTEAEIVLLLD  300
            EGL++ Q LLPL+WN FHGHNLL+E+FAC +RFYFF+ T L+AGL +V++  AEIV+LL+
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPEE-LAAHVDAARFLLFCTPVVNLFRKRTDRVEINRAQTDFHLLADRTRPLDYEIFSV  359
            RLP + L  + DAA+F LFCTPV+NLF + T R+E+ ++ T+ HL+ DRTRPLDYE+FSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  360  SRVFGQRAQTSLEVEFNALYQTLHSDVGNHGRYFSVRREQRALSSNARRYGTRTPYIGTE  419
              V G  A+T+  + F +LY+T ++D GNHGRYFS+RRE R  S +ARRYGTRTPY G+E
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  420  VYVSLVDQAEAPYGDDIRYLSVEAWVTNRDLPRLIPRNGKTDLTMSDSVPIEGVRLVHAP  479
            V++SLVDQ EAPY +++R ++V A VTNRDLP LIPRNG+ DLT+  ++P+ GV L+++P
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  480  SAPRAPYASGETAWRLIRQLSFNYMPLAELDHGDGGQALRNMLGLFIAPGEREQARQIEA  539
             +P++P A  E AWRLIRQLSFNY+PLA+LDH  GGQALR++L LFI++ +  Q+RQ+ +
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  540  LVGARTEPVVRRLPGDGLLVYGRGVRCELTVDETGFSGISPYLFGLVLEHYLARHVSINV  599
            L+G +T PV RRLPG GLLVYGRGV CELTVDE GFSGISPYLFGLVLEHY+ARHVSIN 
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  600  FTETELRSMQRGLIAQWRPRMGGRGAV  626
            F++  L+SMQRG +  W  R G RG+V
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

48) BC1001_0174 in NC_015136


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  666 bits (2516),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 386/628 (62%), Positives = 505/628 (81%), Gaps = 4/628 (0%)

Query  1    MDPRLLDYYNQELIYMREPATAFAEAHPKIARRLGMQAGEVADPYVEQLIESFCFMSARM  60
            MDPRLL+YYN+EL Y+RE ++ FA  HPKIA RLGMQ+ ++ADPYVE++IE+F F+SAR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QIKLDAEFPRFTGRLLEVLYPNYVAPTPSMAVARLYPGVAEGNLLEGHPVPRGTSFTSYV  120
            Q+K+DAEFPRFT RLLEV+ PNYV+PTPSMAV +LYP+  EG+L  G  VPR+T+F S +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PAGENTACEFRSSQDVTLYPLEVAEARLTGIPADIAGLERYMPahrrvrgalrlrlrmle  180
            P GENTAC+FRSSQDVTL PL + E RLT+ P+D+++L+RY+P++ +V GALR+ LR + 
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  aaNMSQLRGLDRLPVYLAGDEHVASHLFELLHAGGCATLIGTPGRFGAPGSAIHAVTENA  240
                S+L G  RLP YL G+E++ASHLFELLH+++ ATL G PG+F++    ++   +++
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDG---ELNVNLQHP  237

Query  241  VVYEGLRTDQSLLPLTWSKFHGHNLLHEYFACPSRFYFFALAGLEEGLRKIDGREAEIVI  300
            V  EGL  +Q+LLPL+W+ FHGHNLLHE+FACP RFYFF+ +GL  GL+K++G  AEIVI
Sbjct  238  VAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVI  297

Query  301  LLDR-PTERLANVVDASRFALFCTPVINLFPKRTDRIELSQSATEFHVVPARLAPLDYEV  359
            LL+R P ++L +  DA++F+LFCTPVINLFP+ T RIE+++S TE H+V  R  PLDYEV
Sbjct  298  LLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEV  357

Query  360  FSVDALYGQVTQTSSEQEFRPLYQSLSEDEGNYGRYFSLRRERRLMSDSARRYGTRTPYV  419
            FSV+ + G  ++T+    FRPLY++ ++DEGN GRYFSLRRE R  S+SARRYGTRTPY 
Sbjct  358  FSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYT  417

Query  420  GTEAFVSLVDQNEAPYRGDIRYLSVSAHVTNRDLPTLVPRNGVDDLVPKNKGALASVGLI  479
            G+E F+SLVDQ+EAPY  ++R ++V+A VTNRDLP L+PRNG DDL      ++A+VGLI
Sbjct  418  GSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLI  477

Query  480  RAPSAPKAPYAERELAWRLIRQLNFNYLPLEDLDHRPGGQGLRDLLRLFLSGEDTEHRRQ  539
            R+P +P++P AERE+AWRLIRQL+FNYLPL DLDHR GGQ+LRDLL LF++++D+ + RQ
Sbjct  478  RPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQ  537

Query  540  VESLVGVKTRPLTRKLPGSGPLTFGRGIECSLTVDETGFSGVSPYLFGLVLGHYLTRHVS  599
            V SL+G KT P+TR+LPGSG L +GRG+ C LTVDE GFSG+SPYLFGLVL HY++RHVS
Sbjct  538  VRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVS  597

Query  600  INSFTQTELHSMQRGRVARWPVRMGMRG  627
            IN+F+Q  LHSMQRG+V  WPVR G RG
Sbjct  598  INTFSQMTLHSMQRGHVMTWPVRTGQRG  625

49) h16_A0647 in NC_008313


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  665 bits (2513),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 375/627 (60%), Positives = 502/627 (81%), Gaps = 1/627 (0%)

Query  11   MDPQLLDYYNRELVYMRELAGEFAKQHPKVAKRLGMQGIEVADPYVERLIEAFCFLSART  70
            MDP+LL+YYNREL Y+RE ++EFA  HPK+A RLGMQG ++ADPYVER+IEAF FLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  71   EIKLDAEFPRFTQRLLEVIYPNYVAPTPSIAVAQFRPSQNEGDFAHGVEVPRGTEVNAAA  130
            ++K+DAEFPRFTQRLLEV+ PNYV+PTPS+AV ++ P  +EGD+A GV VPR+T   ++ 
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  131  APGEKTACQFRTTQPLTLWPVEITEARLTGIPPDVRGPERYVPAHVTVQGALRLRLRCTR  190
            + GE+TACQFR++Q +TLWP+ I E RLT+ PPD+ + +RY+P+++ V GALR+ LR   
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  191  GATFDQLPGLDHLPVYLRGDDLIASQLFELLHSAGVATLIGHPGAMSERPCAVAQDAVSY  250
              +F +L+G  +LP YL G++ IAS+LFELLH+++VATL G+PG          Q++V+ 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  251  VGMGPGEGALPLQWNSFHGHNLLHEYFACPQRFYFFGLNKLAQGLSRIRGKEAEIVVLLS  310
             G+ PG+G LPL WN FHGHNLLHE+FACP+RFYFF    L+ GL +++G+ AEIV+LL+
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  311  KPPRD-LTSKVDREQFALFCTPVVNLFPKRTDRIEVTPGRAEFHLVADRQHPLDYEIHTV  369
            + P D L  + D  QF+LFCTPV+NLFP+ T RIEVT + +E HLV DR +PLDYE+ +V
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  370  RQLCAQRSEHSAGIDFQPLFTTLNSDEGNHGRYFSLRRERRLISEQARKYGTRTAYVGTE  429
            +++ +  +E +  + F+PL+ T N+DEGNHGRYFSLRRE R  SE AR+YGTRT+Y G+E
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  430  LFVSLVDQNEAPYPDALRYLSVESLVTNRDLPNLVPRNGRHDLTPAASIPVDGIGLIRAP  489
            +F+SLVDQ+EAPYP+ LR ++V ++VTNRDLP L+PRNGR+DLT  A+IPV G+GLIR+P
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  490  SAPRPPYADGEMAWRLIRLLGFNYLSLTDLEHRSGGQGLRDMLRLFVANDDLAHQGQIQS  549
             +P+PP A+ EMAWRLIR L+FNYL+L+DL+HR+GGQ+LRD+L LF++ +D ++  Q++S
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  550  LIGANVKPVMRRLPGNGPLIYGRGIQCQLTVDEGGFSGISPYLFGVVLEHFLARHVSVNV  609
            LIG +  PV RRLPG+G L+YGRG+ C+LTVDE GFSGISPYLFG+VLEH++ARHVS+N 
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  610  FTQTELHSMQRGLVHRWPVRMGGRSAV  636
            F+Q  LHSMQRG V  WPVR G R++V
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

50) bglu_2g01570 in NC_012721


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  661 bits (2500),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 386/627 (62%), Positives = 513/627 (82%), Gaps = 1/627 (0%)

Query  1    MDPRFLDYYSRELTYLHELAGEFAAQHPKIARRLGMEGIEVADPYVERLIEAFCFMSART  60
            MDPR+L+YY+REL+YL+E ++EFA+ HPKIA RLGM+G ++ADPYVER+IEAF F+SART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKLDAEFPRFTQRLLEVVYPNYVAPTPSIAVAQLRPSLREGDFTHGLTVPRHSPLRAAI  120
            QLK+DAEFPRFTQRLLEVV PNYV+PTPS+AV +L P  +EGD++ G+TVPR++++ ++I
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PVGEQTACEFRSSQDITLWPIEIAEARLTAVPPDIPDTDRHLLPHQQlrgalrlrlrttg  180
            P GE+TAC+FRSSQD+TLWP+ I E RLTA PPD+P  +R L P+ ++ GALR+ LRT G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  EVKFNQMTRFDRLPIYIGGDERIASHLFELIHAGSVASVVRKLGAARGEGYVVAKTPVAF  240
            E+ F++++   RLP+Y+ G+ERIASHLFEL+H+++VA++    G   GE  V  + PVA 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  EGLQTDQGLLPLPWNAFHGHNLLQEYFACRQRFYFFALTQLAPGLARVDDKEAEIVLLLD  300
            EGL+ +QGLLPL+WN FHGHNLL+E+FAC +RFYFF+ T L++GL +V+++ AEIV+LL+
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPEE-LATHVDASRFLLFCTPIVNLFPKRTDRIEINRAHTDFHLIADRTRPLDYEIFSV  359
            RLP + L  + DA++F LFCTP++NLFP+ T RIE+ ++ T+ HL+ DRTRPLDYE+FSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  360  SRVFGQKAETSQEVEFNPLYQTLHSDIGNHGRYFSVCREQRTLSANARKYGTRMPYTGTE  419
              V G  AET++ + F PLY+T ++D GNHGRYFS+ RE R  S +AR+YGTR PYTG+E
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  420  VYVSLVDQAEAPYADDIRYLSVEAWVTNRDLPCLIPRNGRDDLTMSDSVPIEGVRLVHPP  479
            V++SLVDQ EAPY++++R ++V A VTNRDLPCLIPRNGRDDLT+  ++P+ GV L++PP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  480  SAPRAPYASGETAWRLIRQLSFNYMPLSDLDHGDGGQALRNMLRLFIAPDEREQARQIEA  539
             +P++P A  E AWRLIRQLSFNY+PL+DLDH  GGQALR++L LFI++++  Q+RQ+ +
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  540  LVGARTEPVVRRLPGQDLLVYGRGVRCALTLDETGFSGVSPYLFGLVLEHYLARHVSINV  599
            L+G +T PV RRLPG +LLVYGRGV C LT+DE GFSG+SPYLFGLVLEHY+ARHVSIN 
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  600  FTETELHSMQRGLVTRWRPRMGGRGAV  626
            F++  LHSMQRG V  W  R G RG+V
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

51) BamMC406_6689 in NC_010553


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  661 bits (2497),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 374/627 (60%), Positives = 496/627 (80%), Gaps = 1/627 (0%)

Query  1    MDPRFLDHYNRELTYMRELSAEFAAQHPKIARRLGMQDIEIADPYVERMIEAFCFMSART  60
            MDPR+L+ YNREL+Y+RE +AEFA+ HPKIA RLGMQ+ +IADPYVERMIEAF F+SART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKLEAEFPRFTQRLLEVVYPNYVAPTPSMAVARLHPSLREGDFSKGFKVARYSVLRSSV  120
            QLK++AEFPRFTQRLLEVV PNYV+PTPSMAV +L P  +EGD++KG  V+R + + S++
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PPGEQTACEFRSGHEVTLWPIEIVDAKLTAVPPDLPDMERSLMPHVQLRGALRLRLRTVG  180
            P GE+TAC+FRS+++VTLWP+ I + +LTA PPD+P ++R L P++++ GALR+ LRT G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  EIKFSQISALDRVSLYIGGDERIASHLFELIHASSVASVVRAYGAARTDCAVVAKNPVDF  240
            E+ FS++++  R+++Y+ G+ERIASHLFEL+H+S+VA++    G    +  V  ++PV  
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  EGLSPEQSLLPQIWNTFHGHNLLHEYFTCRQRFYFFVLTQLQAGLSAIDGQEAEIVLLLD  300
            EGL P Q+LLP  WN FHGHNLLHE+F+C +RFYFF  T L AGL  ++G+ AEIV+LL+
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPDE-LVTHVDASSFQLFCTPIINLFPRRTDRIEINRQSTAFHLIPDRSRPLDYEVFSV  359
            RLP + L+ + DA+ F LFCTP+INLFPR T RIE+ +  T  HL+ DR+RPLDYEVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  360  SRVFGQKAESSAEVAFNPLYQTLHSDIGNYGRYFSVLREPRTMSVNARKYGTRSQYIGTE  419
              V G  AE++  + F PLY+T ++D GN GRYFS+ REPR  S +AR+YGTR+ Y G+E
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  420  VFVSLVDQAEAPYADTIRYLSVDAWLTNRDLPRLIPRNGVNDLTMQDSVPIEGVSLVHPP  479
            VF+SLVDQ EAPY++ +R ++V A +TNRDLP LIPRNG +DLT++ ++P+ GV+L++PP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  480  SAPREPYATGQTAWRLIRQLSFNYMPLAELDHRDGGQALRNMLRLFVGTSEHEQLTQIES  539
             +P+ P A  + AWRLIRQLSFNY+PLA+LDHR GGQALR++L LF+ + +  Q  Q+ S
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  540  LVGTRTEPVVRRLPEHGLLVYGRGVRCELTIDETGFSGMSPYLFGLVLEQYLSRHVSINV  599
            L+G +T PV RRLP  GLLVYGRGV CELT+DE GFSG+SPYLFGLVLE+Y++RHVSIN 
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  600  FTETELRSMQRGLVTRWKPRMGARGAV  626
            F++  L+SMQRG V  W  R G RG+V
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

52) Bxe_A4431 in NC_007951


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  658 bits (2486),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 375/629 (60%), Positives = 502/629 (80%), Gaps = 5/629 (0%)

Query  1    MDPRLLEYYNQELIYLRESAGEFAQAHPKIARRLGLQAGEMTDPYVERLIESFCFMAARM  60
            MDPRLLEYYN+EL YLRE+++EFA  HPKIA RLG+Q+ +++DPYVER+IE+F F++AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   RLKIDAEFPRFTQRLLEVTYPNYVAPTPSMAVAQFYPAHTKGDLTGGFRVPRGGKLKTTT  120
            +LKIDAEFPRFTQRLLEV  PNYV+PTPSMAV ++YP    GDL+ G  VPR+  + +  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PRGEHTPCTFRTTQDVVLYPLEIVSARLTGIPPDIPGIERYVPAHSQVCGALRLRIRTTN  180
            P GE+T+C FR++QDV L PL I   RLT+ PPD+P+++RY+P++ +V GALR+ +RT  
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  HEKIASLRNLDRLPVYLAGDEQVASNLFELVHTAGIASIVGEPNGFNAPDRPFSAVTSKA  240
            +  ++ L    RLP YL G+E++AS+LFEL+HT+++A++ GEP  F++    ++     +
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDG---ELNVNLQHP  237

Query  241  VVHEGLDPDQGMLPLIWSKFHGHNLLHEYFACPSRFYFFTLTGLQDGLGKTRGAEAEIVV  300
            V HEGL+P+QG+LPL W+ FHGHNLLHE+FACP RFYFFT TGL  GL K +G  AEIV+
Sbjct  238  VAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVI  297

Query  301  LLDR-APDRLASLVDASRFALFCTPVINLFPQRLERIELAEASTEFHLVPKRQAPLDYEV  359
            LL+R +PD+L    DA++F+LFCTPVINLFP+   RIE++++ TE HLV  R  PLDYEV
Sbjct  298  LLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEV  357

Query  360  FSVQALHAQVGNSSEKFEFRPLYQTLNNDEGNHGRYFSVRRERRLPSDTSRRYGTRTPYI  419
            FSVQ +++  ++++ K  FRPLY+T NNDEGNHGRYFS+RRE R +S+++RRYGTRTPY 
Sbjct  358  FSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYT  417

Query  420  GTETFVSLVDQREAPYHEGIRYLSADAWLTNRDLPLLVPRNGIDDFMQMESGEPIASIGL  479
            G+E F+SLVDQ+EAPY E +R ++  A +TNRDLP L+PRNG DD + ++++ P+A++GL
Sbjct  418  GSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDD-LTVDAAIPVAGVGL  476

Query  480  IRPPSAPRPPYAEGETAWRLIRLLNFNYLPLEDVDHRPGGQGLRDMLRLFLSSEDTEHER  539
            IRPP +P+PP AE E AWRLIR L+FNYLPL D+DHR GGQ+LRD+L LF++++D+ + R
Sbjct  477  IRPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSR  536

Query  540  QVESLLGVKTRSVTRKLPGNGPLVFGRGIECQLTVDETGFSGTSPYLLGLILEHYLARHV  599
            QV SL+G KT +VTR+LPG+G LV+GRG+ C+LTVDE GFSG SPYL+GL+LEHY+ARHV
Sbjct  537  QVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHV  596

Query  600  SINSFTQTELHSMQRGRITRWPVRMGTRG  628
            SIN+F+Q  LHSMQRG++  WPVR G RG
Sbjct  597  SINTFSQMTLHSMQRGHVMTWPVRTGQRG  625

53) Bphyt_0946 in NC_010681


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  656 bits (2479),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 384/628 (62%), Positives = 506/628 (81%), Gaps = 4/628 (0%)

Query  1    MDPRLLDYYNQELMYVRELAGEFAQLHPKIARRLGMQAGEMTDPYVERLIESFSFMAARM  60
            MDPRLL+YYN+EL Y+RE ++EFA LHPKIA RLGMQ+ +++DPYVER+IE+FSF++AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKLDAEFPRFTGRLLEVIYPNYVAPTPSMAVARFYPSPSEGNLVEGFPVRRGSMLTGKK  120
            QLK+DAEFPRFT RLLEV+ PNYV+PTPSMAV ++YP   EG+L  G  V R++ + +  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  SPGENTLCEFRTGQDVALYPLEITHAQLTGIPPDIPMLDRYVPPHTQVRGALRLRLRSTG  180
            + GENT C+FR++QDV+L PL I + +LT+ PPD+P L+RY+PP+ +V GALR+ LR+ G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  DAKIAELRGLDRLPVYLAGDEQVASHLFELLHAAGVASITGEPGRFGDAARPFCAVTHGA  240
            +  ++EL G  RLP YL G+E++ASHLFELLH+++VA+++GEPG+F++         + +
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELN---VNLQHP  237

Query  241  VAHEGLGVDQGLLPLTWSKFHGHNLLHEYFACPSRFYFFTLTGLREGLSKAKGHEVEIVV  300
            VAHEGL  +QGLLPL+W+ FHGHNLLHE+FACP RFYFFT TGL  GL K +G+  EIV+
Sbjct  238  VAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVI  297

Query  301  LLDQ-SPDRLIGLVDASRFALFCTPVINLFPRKAQRIELNQASTEFHLVPKRSAPLDYEV  359
            LL++ +PD+LI   DA++F+LFCTPVINLFPR + RIE+ ++ TE HLV  R+ PLDYEV
Sbjct  298  LLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEV  357

Query  360  YSVEALTAQVGKNSTEFAFRPLYQTLNNDEGNHGryfslrrerrllsdsarrYGTRTPYI  419
            +SV+ + +  +  +    FRPLY+T NNDEGNHGRYFSLRRE R  S+SARRYGTRTPY 
Sbjct  358  FSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYT  417

Query  420  GTEVFVSLVDQQEAPYHEGMRYLSIDAWLTNRDLPNLLPRNGVDDLDAVDSVPAISVGLI  479
            G+EVF+SLVDQ+EAPY E +R +++ A +TNRDLP L+PRNG DDL    ++P  +VGLI
Sbjct  418  GSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLI  477

Query  480  RAPSAPRAPFAERETAWRLIRQLNFNYLPLEDMDHRPGGQGVRDMLRLFLTGDDVGPRRQ  539
            R+P +P++P+AERE AWRLIRQL+FNYLPL D+DHR GGQ++RD+L LF+ ++D    RQ
Sbjct  478  RPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQ  537

Query  540  VESLVGVKTRPVARKLPGGGPLVFGRGIECQLTVDETGFSGLSPYLFGVILEHYLARHVS  599
            V SL+G KT PV+R+LPG+G LV+GRG+ C+LTVDE GFSG+SPYLFG++LEHY+ARHVS
Sbjct  538  VRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVS  597

Query  600  INSFTQTELHSMQRGQLMRWPVRMGTRG  627
            IN+F+Q  LHSMQRG++M WPVR G RG
Sbjct  598  INTFSQMTLHSMQRGHVMTWPVRTGQRG  625

54) BTI_4622 in NC_021174


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  655 bits (2476),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 389/630 (62%), Positives = 516/630 (82%), Gaps = 4/630 (0%)

Query  1    MEPQLLDYYNQELIYMRELAAEFAHAHPKIARRLGMQAGEVADPYVERLIESFCFMAARM  60
            M+P+LL+YYN+EL Y+RE +AEFA  HPKIA RLGMQ+ ++ADPYVER+IE+F F++AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QIKLDAEFPRFTGRLLEVLYPNYVAPTPSMAVARLYPSRTEGNLAEGFRVARGTAFTARV  120
            Q+K+DAEFPRFT RLLEV+ PNYV+PTPSMAV +LYP   EG+LA G  V+R+TAF + +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PAGEKTACQFRSGQDVTLYPLEIADARLTGIPPDIPALDRYVPANVQVRGAlrlrlrTTG  180
            P GE+TACQFRS+QDVTL PL I + RLT+ PPD+PAL+RY+P+N++V GALR+ LRT G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  NVRIADLKGLDRLPLYLAGDPQVASHLFELLHVAGVATLTAAPGEFAAPGRPLAAVTVGA  240
            ++ +++L G  RLP+YL G+ ++ASHLFELLH ++VATL++ PG+F +    L      +
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGE---LNVNLQHP  237

Query  241  LAHEGLGVDEGLLPLTWSKFHGHNLLHEYFACPERFYFVALTGLEEGLRRIAGQEAEIVV  300
            +AHEGL  ++GLLPL+W+ FHGHNLLHE+FACPERFYF + TGL  GL+++ G+ AEIV+
Sbjct  238  VAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVI  297

Query  301  LLDQ-SPERLADVVDASRFALFCTPVINLFARHTDRIELSTGQTEFHLVPARLAPLDYEV  359
            LL++ +P++L +  DA++F+LFCTPVINLF+R T RIE++ + TE HLV  R  PLDYEV
Sbjct  298  LLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEV  357

Query  360  FSVEAMYGQVAATSAELEFRPLYQTLNDDESNYGRYFSTRRERRLVSDSARRYGTRTPYV  419
            FSV+ + G  A T+  + FRPLY+T N+DE+N GRYFS RRE R  S+SARRYGTRTPY 
Sbjct  358  FSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYT  417

Query  420  GTEMFVSLVDQNEAPYSEDIRYLSVDALLTNRDLPSLVPRDGVRDLTVVESAPIDSVGLI  479
            G+E+F+SLVDQ+EAPY+E++R ++V A++TNRDLP L+PR+G  DLTV  + P+ +VGLI
Sbjct  418  GSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLI  477

Query  480  RAPSAPKAPYAEREIAWRLIRQLNFNYLPLDELDHraggqglrgllrlflagDEADNRRQ  539
            R+P +P++P AERE+AWRLIRQL+FNYLPL +LDHR+GGQ+LR+LL LF++++++ + RQ
Sbjct  478  RPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQ  537

Query  540  VESLVGVKTRPVTRKLPGAGPLVFGRGVECALTVDETGFSGVSPYLFGLVLEHYLARHVS  599
            V SL+G KT PVTR+LPG+G LV+GRGV C LTVDE GFSG+SPYLFGLVLEHY+ARHVS
Sbjct  538  VRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVS  597

Query  600  INVFTQTELNSIQRGRVARWPVRMGARGGA  629
            IN F+Q  L+S+QRG+V  WPVR G RG+ 
Sbjct  598  INTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

55) BamMC406_3012 in NC_010551


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  654 bits (2474),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 383/627 (62%), Positives = 497/627 (80%), Gaps = 1/627 (0%)

Query  1    MDPRFLDHYNRELTYMRELSAEFAAQHPKIARRLGMHGIETADPYVERMIEAFCFMSART  60
            MDPR+L+ YNREL+Y+RE +AEFA+ HPKIA RLGM+G + ADPYVERMIEAF F+SART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKLDAEFPRFTQRLLEVVYPNYVAPTPSMAVAKLRPSLREGNFSKGFTVPRHSVLRSSI  120
            QLK+DAEFPRFTQRLLEVV PNYV+PTPSMAV KL P  +EG+++KG TVPR++ + S+I
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PPGERTACEFRSGHEITLWPIEIVDAKLTAVPPDLPDLQRMLMPHMrlrgalrlrlrTVG  180
            P GE TAC+FRS++++TLWP+ I + +LTA PPD+P L+R L P++++ GALR+ LRT G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  EIKFSQISGLDRLSLYIGGDERIASHLFELVHAGGIASVVRAHGATRDDCTFVPKNPVDF  240
            E+ FS+++G  RL++Y+ G+ERIASHLFEL+H++++A++    G   ++     ++PV  
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  EGLRPDQSLLPQMWNTFHGHNLLHEYFTCRQRFYFFVLTQLQAGLSKIDGNEAEIVLLLD  300
            EGL P+Q+LLP  WN FHGHNLLHE+F+C +RFYFF  T L AGL K++GN AEIV+LL+
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPDE-LTAHVDASSFQLFCTPIINLFPRRTDRIEINRALTAFHLIPDRSRPLDYEVFSV  359
            RLP + L  + DA+ F LFCTP+INLFPR T RIE+ +++T  HL+ DR+RPLDYEVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  360  SRVFGQKAETSTEVTFNPLYQTLHSDIGNYGRYFSILREPRAMSANARKYGTRSEYVGTE  419
              V G  AET+  + F PLY+T ++D GN GRYFS+ REPR  S +AR+YGTR+ Y G+E
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  420  VFVSLVDQAEAPYDDAIRYLSVDAWLTNRDLPRLIPRNGFSDLTMQDSVPIEGVSLVHPP  479
            VF+SLVDQ EAPY + +R ++V A +TNRDLP LIPRNG  DLT++ ++P+ GV+L++PP
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  480  STPREPYATGETAWRLIRQLSFNYMPLAELDHRDGGQALRNMLRLFVGTSEHEQRTQIES  539
              P+ P A  E AWRLIRQLSFNY+PLA+LDHR GGQALR++L LF+ + +  Q  Q+ S
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  540  LVGARTEPVVRRLPGHGLLVYGRGVRCELTVDESGFSGVSPYLFGLVLEQYLARHVSINV  599
            L+G +T PV RRLPG GLLVYGRGV CELTVDE GFSG+SPYLFGLVLE+Y+ARHVSIN 
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  600  FTETELRSMQRGVVTRWKPRMGGRGAV  626
            F++  L+SMQRG V  W  R G RG+V
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

56) YE2697 in NC_008800


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  653 bits (2469),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 353/625 (57%), Positives = 492/625 (79%), Gaps = 1/625 (0%)

Query  1    MDHKFLDYYNKELTFMREMAQEFADKHPKIAGRLGMHGIEVADPYVERLIESFCFLSART  60
            MD ++L+YYN+EL+++RE + EFA  HPKIA+RLGM+G ++ADPYVER+IE+F FLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QIKLDAEFPKFTQRLLDIVYPNYNSPTPSMGVIQLKPNLKEGDLTQGYNVPRGSSFFTHI  120
            Q+K+DAEFP+FTQRLL++V PNY +PTPSM+V++L P+ +EGDL++G  VPR+++F + I
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  APGETTRCEFRSGQDVGLWPLEITEARLSSIPPDMPNLEKHRIAYHRLKGALRIKLKLVG  180
            + GE T C+FRS+QDV LWPL I E RL++ PPDMP L++   +  ++ GALRI L+  G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  DLQFSQLAGLDRLPIYINGDERIVSHIFELLHASHVATIIRAGHGVTAEDTVISNDALAF  240
            +L FS+LAG  RLP+Y+ G+ERI SH+FELLH+S VAT+        +E  V  ++++A 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  EGLSPDQSLLPLSWNIFHGHNLMQEYFTCRQRFYFFTLTQLSKSLSNNHTNEAEIIILLD  300
            EGL P+Q+LLPL+WN+FHGHNL++E+F+C +RFYFFT T LS +L + + N AEI+ILL+
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPQE-LVSHVAPSRFLLNCTPVINLFQKRMDKIEINRALNDFHVVPDRSRPLDYEVFSI  359
            RLP + L+ +  +++F L CTPVINLF +   +IE+ +++ + H+V DR+RPLDYEVFS+
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  360  TKVFGQQAETSKEVVFNPLYQTRHCDNGNFGRYFSITRKPRTSQNNKRKYDTRTPYASTE  419
              V G +AET++ ++F PLY+TR+ D+GN GRYFS+ R PR S ++ R+Y+TRTPY+++E
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  420  VFVSLVDQQEAPYGDNLRYLSIEAQVTNRDLPRLITSNGNFELTMSDSAPVHGAHFVFQP  479
            VF+SLVDQ+EAPY +NLR +++ A VTNRDLP LI  NG  +LT+  + PV G  ++  P
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  480  SPPRAPFAIDESAWRLIRQLSFNYLPLSDMTHANGGESLRNMLRLFVSASDLESNTQIDA  539
             PP++P+A  E AWRLIRQLSFNYLPL+D+ H  GG++LR++L LF++A D   + Q+ +
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  540  LVGCKSEPVIRRLPGNGLLVYGRGICCTLTVDEEGFSGISPYLFGLIMENYLARHAAINV  599
            L+GCK+ PV RRLPG+GLLVYGRG+ C LTVDEEGFSGISPYLFGL++E+Y+ARH +IN 
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  600  FTETELHSMQRGRVGQWKARPGRRG  624
            F++  LHSMQRG+V  W  R G+RG
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRG  625

57) Y11_15771 in NC_017564


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  653 bits (2469),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 353/625 (57%), Positives = 492/625 (79%), Gaps = 1/625 (0%)

Query  1    MDHKFLDYYNKELTFMREMAQEFADKHPKIAGRLGMHGIEVADPYVERLIESFCFLSART  60
            MD ++L+YYN+EL+++RE + EFA  HPKIA+RLGM+G ++ADPYVER+IE+F FLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QIKLDAEFPKFTQRLLDIVYPNYNSPTPSMGVIQLKPNLKEGDLTQGYNVPRGSSFFTHI  120
            Q+K+DAEFP+FTQRLL++V PNY +PTPSM+V++L P+ +EGDL++G  VPR+++F + I
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  SPGETTRCEFRSGQDVGLWPLEITEARLSSIPPDMPNLEKHRIAYHRLKGALRIKLKLVG  180
            + GE T C+FRS+QDV LWPL I E RL++ PPDMP L++   +  ++ GALRI L+  G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  DLQFSQLAGLDRLPIYINGDERIVSHIFELLHASHVATIIRAGHGVTAEDTVISNDALAF  240
            +L FS+LAG  RLP+Y+ G+ERI SH+FELLH+S VAT+        +E  V  ++++A 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  EGLSPDQSLLPLSWNIFHGHNLMQEYFTCRQRFYFFTLTQLSKSLSNNHTNEAEIIILLD  300
            EGL P+Q+LLPL+WN+FHGHNL++E+F+C +RFYFFT T LS +L + + N AEI+ILL+
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  RLPQE-LVSHVAPSRFLLNCTPVINLFQKRMDKIEINRALNDFHVVPDRSRPLDYEVFSI  359
            RLP + L+ +  +++F L CTPVINLF +   +IE+ +++ + H+V DR+RPLDYEVFS+
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  360  TKVFGQQAETSKEVVFNPLYQTRHCDNGNFGRYFSITRKPRTSQNNKRKYDTRTPYASTE  419
              V G +AET++ ++F PLY+TR+ D+GN GRYFS+ R PR S ++ R+Y+TRTPY+++E
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  420  VFVSLVDQQEAPYGDNLRYLSIEAQVTNRDLPRLITSNGNFELTMSDSAPVHGAHFVFQP  479
            VF+SLVDQ+EAPY +NLR +++ A VTNRDLP LI  NG  +LT+  + PV G  ++  P
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  480  SPPRAPFAIDESAWRLIRQLSFNYLPLSDMTHANGGESLRNMLRLFVSASDLESNTQIDA  539
             PP++P+A  E AWRLIRQLSFNYLPL+D+ H  GG++LR++L LF++A D   + Q+ +
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  540  LVGCKSEPVIRRLPGNGLLVYGRGICCTLTVDEEGFSGISPYLFGLIMENYLARHAAINV  599
            L+GCK+ PV RRLPG+GLLVYGRG+ C LTVDEEGFSGISPYLFGL++E+Y+ARH +IN 
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  600  FTETELHSMQRGRVGQWKARPGRRG  624
            F++  LHSMQRG+V  W  R G+RG
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRG  625

58) Bamb_3469 in NC_008391


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  649 bits (2452),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 384/628 (62%), Positives = 505/628 (81%), Gaps = 4/628 (0%)

Query  1    MDPRLLDYYNQELIYMRELATEFAQAHPKIARRLGMQAGEVADPYVERLIESFCFMAARL  60
            MDPRLL+YYN+EL Y+RE ++EFA  HPKIA RLGMQ+ ++ADPYVER+IE+F F++AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKLDAEFPRFTGRLLEVIYPNYVAPTPSIAVARLYPGQAEGNLAAGYRIARGTSFKARV  120
            QLK+DAEFPRFT RLLEV+ PNYV+PTPS+AV +LYP+  EG+LA G  ++R+T+F + +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PDGEKTACQFTSGQDVTLWPLTITDARLTGIPPDIPALDRHVPPDRQVRGALRLRLATTG  180
            P+GE+TACQF S+QDVTLWPL+I + RLT+ PPD+PAL+R +PP+ +V GALR+ L T G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  DVRIADLKGLDRLPVYLAGDEQVASHLFELLHVAGVASVIAAPGEFGVPGRSPAAVIHGA  240
            ++ +++L G  RLP YL G+E++ASHLFELLH ++VA++ + PG+F+         ++ +
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDG---ELNVNLQHP  237

Query  241  VEHEGLGTDQNLLPLTWTKFHGHNLLHEYFACPARFWFFALNGLAEGLSRVNGREVEIVV  300
            V HEGL  +Q LLPL+W  FHGHNLLHE+FACP RF FF+  GL+ GL +V+G   EIV+
Sbjct  238  VAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVI  297

Query  301  LLDRAPGQ-LANLVDASRFALFCTPVINLFKRHTDRIEISPRETEFHLVPARLAPLDYEV  359
            LL+R P + L +  DA++F+LFCTPVINLF R T RIE++   TE HLV  R  PLDYEV
Sbjct  298  LLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEV  357

Query  360  FSVETVYGQVAATSDELEFRPLYQTLNNDEGNHGRYFSTRRERRLASDSARRYGTRTPYV  419
            FSV+ V G  A T+  + FRPLY+T NNDEGNHGRYFS RRE R +S+SARRYGTRTPY 
Sbjct  358  FSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYT  417

Query  420  GTEVFLSLVDQNEAPYGEDIRFLSVDALLTNRDLATLVPRDGVRDLAMEESAPVESIGLI  479
            G+EVFLSLVDQ+EAPY E++R ++V A++TNRDL+ L+PR+G  DL+++ + PV ++GLI
Sbjct  418  GSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLI  477

Query  480  RPPSPPKAPYAEREMAWRLIRQLNFNYLPLEgldhrdggqglrdllrlylSNDNNEHSRQ  539
            RPP PP++P AEREMAWRLIRQL+FNYLPL +LDHR GGQ+LRDLL L+++ +++ +SRQ
Sbjct  478  RPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQ  537

Query  540  VESLVGVNTRPVTRKLPGTGPMTFGRGIECAVTVDEAGFSGVSPYLFGTILEHWLARHVS  599
            V SL+G +T PVTR+LPG+G + +GRG+ C +TVDE GFSG+SPYLFG +LEH +ARHVS
Sbjct  538  VRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVS  597

Query  600  INSFTQTELHSMQRGRIARWPVRTGTRG  627
            IN+F+Q  LHSMQRG++  WPVRTG RG
Sbjct  598  INTFSQMTLHSMQRGHVMTWPVRTGQRG  625

59) tssF-3 in NC_017832


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  648 bits (2450),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 385/631 (62%), Positives = 512/631 (82%), Gaps = 6/631 (0%)

Query  1    MDPQLLDYYNQELIYMRELGAEFARAHPKIARRLGMQAGEVADPYVERLIESFCFMAARM  60
            MDP+LL+YYN+EL Y+RE GAEFA  HPKIA RLGMQ+ ++ADPYVER+IE+F F++AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QIKLDAEFPRFTGRLLEVLYPNYVAPTPSMAVARLYPSRTEGNLAQGFRVARGTAFAARV  120
            Q+K+DAEFPRFT RLLEV+ PNYV+PTPSMAV +LYP   EG+LA+G  V+R+TAF + +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PAGEKTACRFRSGQDVTLYPLEIADARLTGIPPDIPALDRYVPAGAQVRGAlrlrlrTTG  180
            P GE+TAC+FRS+QDVTL PL I + RLT+ PPD+PAL+RY+P+  +V GALR+ LRT G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  NMRIADLRGLDRLPLYLAGDAQVASHLFELLHVAGVATLTAAPGEFAAPGRPPAAVTVD-  239
            ++ +++L G  RLP+YL G+ ++ASHLFELLH ++VATL++ PG+F +       V ++ 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGE----LNVNLQH  236

Query  240  ALAHEGLGADEGLLPLTWAKFHGHNLLHEYFACPERFYFVALTGLEEGLRRIAGSEVEIV  299
            ++AHEGL +++GLLPL+W  FHGHNLLHE+FACPERFYF + TGL  GL+++ G+  EIV
Sbjct  237  PVAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIV  296

Query  300  VLLEQ-SPERLADVVDASRFALFCTPVINLFPRHMDRIELSSGQTECHLVPARLAPLDYE  358
            +LL++ +P++L +  DA++F+LFCTPVINLFPR   RIE++ + TE HLV  R  PLDYE
Sbjct  297  ILLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYE  356

Query  359  VFSVEAMYGQVAATSAELEFRPLYQTLNDDESNYGRYFSTRRERRLVSDFARRYGTRTPY  418
            VFSV+ + G  A T+  + FRPLY+T N+DE+N GRYFS RRE R  S+ ARRYGTRTPY
Sbjct  357  VFSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPY  416

Query  419  VGTEMFVSLVDQNEAPYSEDIRYLSVDALVTNRDLPSLVPRDGVRDLTAIESAPIDSVGL  478
             G+E+F+SLVDQ+EAPY+E++R ++V A+VTNRDLP L+PR+G  DLT   + P+ +VGL
Sbjct  417  TGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGL  476

Query  479  IRAPSAPKAPYAEREIAWRLIRQLNFNYLPLDELDHraggqglrgllrlflagDEADSRR  538
            IR+P +P++P AERE+AWRLIRQL+FNYLPL +LDHR+GGQ+LR+LL LF++++++   R
Sbjct  477  IRPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSR  536

Query  539  QVESLVGVKTRPVTRKLPGAGPLVFGRGVECALSVDETGFSGVSPYLFGLVLEHYLARHV  598
            QV SL+G KT PVTR+LPG+G LV+GRGV C L+VDE GFSG+SPYLFGLVLEHY+ARHV
Sbjct  537  QVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHV  596

Query  599  SINVFTQTELNSIQRGRIARWPVRMGARGGA  629
            SIN F+Q  L+S+QRG++  WPVR G RG+ 
Sbjct  597  SINTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

60) BURPS1106A_A0248 in NC_009078


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  648 bits (2451),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 385/631 (62%), Positives = 512/631 (82%), Gaps = 6/631 (0%)

Query  1    MDPQLLNYYNQELIYMRELGAEFARAHPKIARRLGMQAGEVADPYVERLIESFCFMAARM  60
            MDP+LL+YYN+EL Y+RE GAEFA  HPKIA RLGMQ+ ++ADPYVER+IE+F F++AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QIKLDAEFPRFTGRLLEVLYPNYVAPTPSMAVARLYPSRTEGNLAQGFRVARGTAFAARV  120
            Q+K+DAEFPRFT RLLEV+ PNYV+PTPSMAV +LYP   EG+LA+G  V+R+TAF + +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PAGEKTACRFRSGQDVTLYPLEIADARLTGIPPDIPALDRYVPAGAQVRGAlrlrlrTTG  180
            P GE+TAC+FRS+QDVTL PL I + RLT+ PPD+PAL+RY+P+  +V GALR+ LRT G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  NMRIADLRGLDRLPLYLAGDAQVASHLFELLHVAGVATLTAAPGEFAAPGRPPAAVTVD-  239
            ++ +++L G  RLP+YL G+ ++ASHLFELLH ++VATL++ PG+F +       V ++ 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGE----LNVNLQH  236

Query  240  ALAHEGLGADEGLLPLTWAKFHGHNLLHEYFACPERFYFVALTGLEEGLRRIAGSEVEIV  299
            ++AHEGL +++GLLPL+W  FHGHNLLHE+FACPERFYF + TGL  GL+++ G+  EIV
Sbjct  237  PVAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIV  296

Query  300  VLLEQ-SPERLADVVDASRFALFCTPVINLFPRHMDRIELSSGQTECHLVPARLAPLDYE  358
            +LL++ +P++L +  DA++F+LFCTPVINLFPR   RIE++ + TE HLV  R  PLDYE
Sbjct  297  ILLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYE  356

Query  359  VFSVEAMYGQVAATSAELEFRPLYQTLNDDESNYGRYFSTRRERRLVSDFARRYGTRTPY  418
            VFSV+ + G  A T+  + FRPLY+T N+DE+N GRYFS RRE R  S+ ARRYGTRTPY
Sbjct  357  VFSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPY  416

Query  419  VGTEMFVSLVDQNEAPYSEDIRYLSVDALVTNRDLPSLVPRDGVRDLTAIESAPIDSVGL  478
             G+E+F+SLVDQ+EAPY+E++R ++V A+VTNRDLP L+PR+G  DLT   + P+ +VGL
Sbjct  417  TGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGL  476

Query  479  IRAPSAPKAPYAEREIAWRLIRQLNFNYLPLDELDHraggqglrgllrlflagDEADSRR  538
            IR+P +P++P AERE+AWRLIRQL+FNYLPL +LDHR+GGQ+LR+LL LF++++++   R
Sbjct  477  IRPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSR  536

Query  539  QVESLVGVKTRPVTRKLPGAGPLVFGRGVECALSVDETGFSGVSPYLFGLVLEHYLARHV  598
            QV SL+G KT PVTR+LPG+G LV+GRGV C L+VDE GFSG+SPYLFGLVLEHY+ARHV
Sbjct  537  QVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHV  596

Query  599  SINVFTQTELNSIQRGRIARWPVRMGARGGA  629
            SIN F+Q  L+S+QRG++  WPVR G RG+ 
Sbjct  597  SINTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

61) BURPS668_A0339 in NC_009075


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  648 bits (2450),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 385/631 (62%), Positives = 512/631 (82%), Gaps = 6/631 (0%)

Query  1    MDPQLLDYYNQELIYMRELGAEFARAHPKIARRLGMQAGEVADPYVERLIESFCFMAARM  60
            MDP+LL+YYN+EL Y+RE GAEFA  HPKIA RLGMQ+ ++ADPYVER+IE+F F++AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QIKLDAEFPRFTGRLLEVLYPNYVAPTPSMAVARLYPSRTEGNLAQGFRVARGTAFAARV  120
            Q+K+DAEFPRFT RLLEV+ PNYV+PTPSMAV +LYP   EG+LA+G  V+R+TAF + +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PAGEKTACRFRSGQDVTLYPLEIADARLTGIPPDIPALDRYVPAGAQVRGAlrlrlrTTG  180
            P GE+TAC+FRS+QDVTL PL I + RLT+ PPD+PAL+RY+P+  +V GALR+ LRT G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  NMRIADLRGLDRLPLYLAGDAQVASHLFELLHVAGVATLTAAPGEFAAPGRPPAAVTVD-  239
            ++ +++L G  RLP+YL G+ ++ASHLFELLH ++VATL++ PG+F +       V ++ 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGE----LNVNLQH  236

Query  240  ALAHEGLGADEGLLPLTWAKFHGHNLLHEYFACPERFYFVALTGLEEGLRRIAGSEVEIV  299
            ++AHEGL +++GLLPL+W  FHGHNLLHE+FACPERFYF + TGL  GL+++ G+  EIV
Sbjct  237  PVAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIV  296

Query  300  VLLEQ-SPERLADVVDASRFALFCTPVINLFPRHMDRIELSSGQTECHLVPARLAPLDYE  358
            +LL++ +P++L +  DA++F+LFCTPVINLFPR   RIE++ + TE HLV  R  PLDYE
Sbjct  297  ILLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYE  356

Query  359  VFSVEAMYGQVAATSAELEFRPLYQTLNDDESNYGRYFSTRRERRLVSDFARRYGTRTPY  418
            VFSV+ + G  A T+  + FRPLY+T N+DE+N GRYFS RRE R  S+ ARRYGTRTPY
Sbjct  357  VFSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPY  416

Query  419  VGTEMFVSLVDQNEAPYSEDIRYLSVDALVTNRDLPSLVPRDGVRDLTAIESAPIDSVGL  478
             G+E+F+SLVDQ+EAPY+E++R ++V A+VTNRDLP L+PR+G  DLT   + P+ +VGL
Sbjct  417  TGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGL  476

Query  479  IRAPSAPKAPYAEREIAWRLIRQLNFNYLPLDELDHraggqglrgllrlflagDEADSRR  538
            IR+P +P++P AERE+AWRLIRQL+FNYLPL +LDHR+GGQ+LR+LL LF++++++   R
Sbjct  477  IRPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSR  536

Query  539  QVESLVGVKTRPVTRKLPGAGPLVFGRGVECALSVDETGFSGVSPYLFGLVLEHYLARHV  598
            QV SL+G KT PVTR+LPG+G LV+GRGV C L+VDE GFSG+SPYLFGLVLEHY+ARHV
Sbjct  537  QVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHV  596

Query  599  SINVFTQTELNSIQRGRIARWPVRMGARGGA  629
            SIN F+Q  L+S+QRG++  WPVR G RG+ 
Sbjct  597  SINTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

62) BPC006_II0236 in NC_018529


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  648 bits (2451),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 385/631 (62%), Positives = 512/631 (82%), Gaps = 6/631 (0%)

Query  1    MDPQLLNYYNQELIYMRELGAEFARAHPKIARRLGMQAGEVADPYVERLIESFCFMAARM  60
            MDP+LL+YYN+EL Y+RE GAEFA  HPKIA RLGMQ+ ++ADPYVER+IE+F F++AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QIKLDAEFPRFTGRLLEVLYPNYVAPTPSMAVARLYPSRTEGNLAQGFRVARGTAFAARV  120
            Q+K+DAEFPRFT RLLEV+ PNYV+PTPSMAV +LYP   EG+LA+G  V+R+TAF + +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PAGEKTACRFRSGQDVTLYPLEIADARLTGIPPDIPALDRYVPAGAQVRGAlrlrlrTTG  180
            P GE+TAC+FRS+QDVTL PL I + RLT+ PPD+PAL+RY+P+  +V GALR+ LRT G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  NMRIADLRGLDRLPLYLAGDAQVASHLFELLHVAGVATLTAAPGEFAAPGRPPAAVTVD-  239
            ++ +++L G  RLP+YL G+ ++ASHLFELLH ++VATL++ PG+F +       V ++ 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGE----LNVNLQH  236

Query  240  ALAHEGLGADEGLLPLTWAKFHGHNLLHEYFACPERFYFVALTGLEEGLRRIAGSEVEIV  299
            ++AHEGL +++GLLPL+W  FHGHNLLHE+FACPERFYF + TGL  GL+++ G+  EIV
Sbjct  237  PVAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIV  296

Query  300  VLLEQ-SPERLADVVDASRFALFCTPVINLFPRHMDRIELSSGQTECHLVPARLAPLDYE  358
            +LL++ +P++L +  DA++F+LFCTPVINLFPR   RIE++ + TE HLV  R  PLDYE
Sbjct  297  ILLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYE  356

Query  359  VFSVEAMYGQVAATSAELEFRPLYQTLNDDESNYGRYFSTRRERRLVSDFARRYGTRTPY  418
            VFSV+ + G  A T+  + FRPLY+T N+DE+N GRYFS RRE R  S+ ARRYGTRTPY
Sbjct  357  VFSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPY  416

Query  419  VGTEMFVSLVDQNEAPYSEDIRYLSVDALVTNRDLPSLVPRDGVRDLTAIESAPIDSVGL  478
             G+E+F+SLVDQ+EAPY+E++R ++V A+VTNRDLP L+PR+G  DLT   + P+ +VGL
Sbjct  417  TGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGL  476

Query  479  IRAPSAPKAPYAEREIAWRLIRQLNFNYLPLDELDHraggqglrgllrlflagDEADSRR  538
            IR+P +P++P AERE+AWRLIRQL+FNYLPL +LDHR+GGQ+LR+LL LF++++++   R
Sbjct  477  IRPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSR  536

Query  539  QVESLVGVKTRPVTRKLPGAGPLVFGRGVECALSVDETGFSGVSPYLFGLVLEHYLARHV  598
            QV SL+G KT PVTR+LPG+G LV+GRGV C L+VDE GFSG+SPYLFGLVLEHY+ARHV
Sbjct  537  QVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHV  596

Query  599  SINVFTQTELNSIQRGRIARWPVRMGARGGA  629
            SIN F+Q  L+S+QRG++  WPVR G RG+ 
Sbjct  597  SINTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

63) BPSS0178 in NC_006351


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  648 bits (2450),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 385/631 (62%), Positives = 512/631 (82%), Gaps = 6/631 (0%)

Query  1    MDPQLLDYYNQELIYMRELGAEFARAHPKIARRLGMQAGEVADPYVERLIESFCFMAARM  60
            MDP+LL+YYN+EL Y+RE GAEFA  HPKIA RLGMQ+ ++ADPYVER+IE+F F++AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QIKLDAEFPRFTGRLLEVLYPNYVAPTPSMAVARLYPSRTEGNLAQGFRVARGTAFAARV  120
            Q+K+DAEFPRFT RLLEV+ PNYV+PTPSMAV +LYP   EG+LA+G  V+R+TAF + +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PAGEKTACRFRSGQDVTLYPLEIADARLTGIPPDIPALDRYVPAGAQVRGAlrlrlrTTG  180
            P GE+TAC+FRS+QDVTL PL I + RLT+ PPD+PAL+RY+P+  +V GALR+ LRT G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  NMRIADLRGLDRLPLYLAGDAQVASHLFELLHVAGVATLTAAPGEFAAPGRPPAAVTVD-  239
            ++ +++L G  RLP+YL G+ ++ASHLFELLH ++VATL++ PG+F +       V ++ 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGE----LNVNLQH  236

Query  240  ALAHEGLGADEGLLPLTWAKFHGHNLLHEYFACPERFYFVALTGLEEGLRRIAGSEVEIV  299
            ++AHEGL +++GLLPL+W  FHGHNLLHE+FACPERFYF + TGL  GL+++ G+  EIV
Sbjct  237  PVAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIV  296

Query  300  VLLEQ-SPERLADVVDASRFALFCTPVINLFPRHMDRIELSSGQTECHLVPARLAPLDYE  358
            +LL++ +P++L +  DA++F+LFCTPVINLFPR   RIE++ + TE HLV  R  PLDYE
Sbjct  297  ILLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYE  356

Query  359  VFSVEAMYGQVAATSAELEFRPLYQTLNDDESNYGRYFSTRRERRLVSDFARRYGTRTPY  418
            VFSV+ + G  A T+  + FRPLY+T N+DE+N GRYFS RRE R  S+ ARRYGTRTPY
Sbjct  357  VFSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPY  416

Query  419  VGTEMFVSLVDQNEAPYSEDIRYLSVDALVTNRDLPSLVPRDGVRDLTAIESAPIDSVGL  478
             G+E+F+SLVDQ+EAPY+E++R ++V A+VTNRDLP L+PR+G  DLT   + P+ +VGL
Sbjct  417  TGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGL  476

Query  479  IRAPSAPKAPYAEREIAWRLIRQLNFNYLPLDELDHraggqglrgllrlflagDEADSRR  538
            IR+P +P++P AERE+AWRLIRQL+FNYLPL +LDHR+GGQ+LR+LL LF++++++   R
Sbjct  477  IRPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSR  536

Query  539  QVESLVGVKTRPVTRKLPGAGPLVFGRGVECALSVDETGFSGVSPYLFGLVLEHYLARHV  598
            QV SL+G KT PVTR+LPG+G LV+GRGV C L+VDE GFSG+SPYLFGLVLEHY+ARHV
Sbjct  537  QVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHV  596

Query  599  SINVFTQTELNSIQRGRIARWPVRMGARGGA  629
            SIN F+Q  L+S+QRG++  WPVR G RG+ 
Sbjct  597  SINTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

64) BURPS1710b_A1700 in NC_007435


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  648 bits (2449),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 384/631 (61%), Positives = 511/631 (81%), Gaps = 6/631 (0%)

Query  1    MDPQLLDYYNQELIYMRELGAEFARAHPKIARRLGMQAGEVADPYVERLIESFCFMAARM  60
            MDP+LL+YYN+EL Y+RE GAEFA  HPKIA RLGMQ+ ++ADPYVER+IE+F F++AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QIKLDAEFPRFTGRLLEVLYPTYVAPTPSMAVARLYPSRTEGNLAQGFRVARGTAFAARV  120
            Q+K+DAEFPRFT RLLEV+ P YV+PTPSMAV +LYP   EG+LA+G  V+R+TAF + +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PAGEKTACRFRSGQDVTLYPLEIADARLTGIPPDIPALDRYVPAGAQVRGAlrlrlrTTG  180
            P GE+TAC+FRS+QDVTL PL I + RLT+ PPD+PAL+RY+P+  +V GALR+ LRT G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  NMRIADLRGLDRLPLYLAGDAQVASHLFELLHVAGVATLTAAPGEFAAPGRPPAAVTVD-  239
            ++ +++L G  RLP+YL G+ ++ASHLFELLH ++VATL++ PG+F +       V ++ 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGE----LNVNLQH  236

Query  240  ALAHEGLGADEGLLPLTWAKFHGHNLLHEYFACPERFYFVALTGLEEGLRRIAGSEVEIV  299
            ++AHEGL +++GLLPL+W  FHGHNLLHE+FACPERFYF + TGL  GL+++ G+  EIV
Sbjct  237  PVAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIV  296

Query  300  VLLEQ-SPERLADVVDASRFALFCTPVINLFPRHMDRIELSSGQTECHLVPARLAPLDYE  358
            +LL++ +P++L +  DA++F+LFCTPVINLFPR   RIE++ + TE HLV  R  PLDYE
Sbjct  297  ILLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYE  356

Query  359  VFSVEAMYGQVAATSAELEFRPLYQTLNDDESNYGRYFSTRRERRLVSDFARRYGTRTPY  418
            VFSV+ + G  A T+  + FRPLY+T N+DE+N GRYFS RRE R  S+ ARRYGTRTPY
Sbjct  357  VFSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPY  416

Query  419  VGTEMFVSLVDQNEAPYSEDIRYLSVDALVTNRDLPSLVPRDGVRDLTAIESAPIDSVGL  478
             G+E+F+SLVDQ+EAPY+E++R ++V A+VTNRDLP L+PR+G  DLT   + P+ +VGL
Sbjct  417  TGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGL  476

Query  479  IRAPSAPKAPYAEREIAWRLIRQLNFNYLPLDELDHraggqglrgllrlflagDEADSRR  538
            IR+P +P++P AERE+AWRLIRQL+FNYLPL +LDHR+GGQ+LR+LL LF++++++   R
Sbjct  477  IRPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSR  536

Query  539  QVESLVGVKTRPVTRKLPGAGPLVFGRGVECALSVDETGFSGVSPYLFGLVLEHYLARHV  598
            QV SL+G KT PVTR+LPG+G LV+GRGV C L+VDE GFSG+SPYLFGLVLEHY+ARHV
Sbjct  537  QVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHV  596

Query  599  SINVFTQTELNSIQRGRIARWPVRMGARGGA  629
            SIN F+Q  L+S+QRG++  WPVR G RG+ 
Sbjct  597  SINTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

65) A1122_11240 in NC_017168


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  647 bits (2446),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 345/626 (56%), Positives = 494/626 (79%), Gaps = 3/626 (0%)

Query  1    MDHKFLDYYNKELTFMREMAQEFAEKHPKIAGRLGMHGIEVADPYVERLIESFCFLSART  60
            MD ++L+YYN+EL+++RE + EFA  HPKIA+RLGM+G ++ADPYVER+IE+F FLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QIKLDAEFPKFTQRLLDIVYPNYNSPTPSMGVIQLKPNLKEGDLTQGYCVPRGSSFFTHI  120
            Q+K+DAEFP+FTQRLL++V PNY +PTPSM+V++L P+ +EGDL++G  VPR+++F + I
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  APGETTRCEFRSGQDVELWPLEIAEARLSSVPPDMPNLEKHRIAYHRLKGALRIKLKLVG  180
            + GE T C+FRS+QDV LWPL I E RL++ PPDMP L++   +  ++ GALRI L+  G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  DLTFSQLEGLDRLPIYIDGDERIVSHIFELLHASHVATII-RAGHGETAKDTVISDQPLS  239
            +L+FS+L G  RLP+Y+ G+ERI SH+FELLH+S VAT+   +GH +   +  + ++P++
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNL-QHPVA  239

Query  240  FEGLSPDQSLLPLSWNIFHGHNLVQEYFTCRQRFYFFTLTQLSQSLRDNHTGEAEIIILL  299
             EGL P+Q+LLPL+WN+FHGHNL++E+F+C +RFYFFT T LS +L+  +   AEI+ILL
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  300  DRLPQD-LVSHVAPSRFLLACTPVINLFPKRMDKIEINRALNDFHVVPDRSRPLDYEVFA  358
            +RLP D L+ +  +++F L CTPVINLFP+   +IE+ +++ + H+V DR+RPLDYEVF+
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  359  INKVFGQQAETSNEVVFNPLYQTRHCDNGNFGRYFSITRKARTGDSNKRKYDTRTPYAST  418
            ++ V G +AET+  ++F PLY+TR+ D+GN GRYFS+ R +R +  + R+Y+TRTPY+++
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGS  419

Query  419  EVFVSLVDQQEAPYGDSLRYLSIEAQVTNRDLPRLISASGNFELTMSDSAPVHGARFVFQ  478
            EVF+SLVDQ+EAPY ++LR +++ A VTNRDLP LI+ +G  +LT+  + PV G  ++  
Sbjct  420  EVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRP  479

Query  479  PSAPRAPFAMDESAWRLIRQLSFNYLPLSDMSHSNGGESLRNMLRLFVNASDHESNTQID  538
            P +P++P+A  E AWRLIRQLSFNYLPL+D+ H  GG++LR++L LF+ A D   + Q+ 
Sbjct  480  PRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVR  539

Query  539  ALVGCKSEPVIRRLPGNGLLVYGRGICCTLTVDEEGFSGISPYLFGMIMENYVARHAAIN  598
            +L+GCK+ PV RRLPG+GLLVYGRG+ C LTVDEEGFSGISPYLFG+++E+Y+ARH +IN
Sbjct  540  SLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSIN  599

Query  599  VFTETELNSMQRGRVGHWKARPGRRG  624
             F++  L+SMQRG+V  W  R G+RG
Sbjct  600  TFSQMTLHSMQRGHVMTWPVRTGQRG  625

66) YpAngola_A2697 in NC_010159


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  647 bits (2446),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 345/626 (56%), Positives = 494/626 (79%), Gaps = 3/626 (0%)

Query  1    MDHKFLDYYNKELTFMREMAQEFAEKHPKIAGRLGMHGIEVADPYVERLIESFCFLSART  60
            MD ++L+YYN+EL+++RE + EFA  HPKIA+RLGM+G ++ADPYVER+IE+F FLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QIKLDAEFPKFTQRLLDIVYPNYNSPTPSMGVIQLKPNLKEGDLTQGYCVPRGSSFFTHI  120
            Q+K+DAEFP+FTQRLL++V PNY +PTPSM+V++L P+ +EGDL++G  VPR+++F + I
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  APGETTRCEFRSGQDVELWPLEIAEARLSSVPPDMPNLEKHRIAYHRLKGALRIKLKLVG  180
            + GE T C+FRS+QDV LWPL I E RL++ PPDMP L++   +  ++ GALRI L+  G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  DLTFSQLEGLDRLPIYIDGDERIVSHIFELLHASHVATII-RAGHGETAKDTVISDQPLS  239
            +L+FS+L G  RLP+Y+ G+ERI SH+FELLH+S VAT+   +GH +   +  + ++P++
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNL-QHPVA  239

Query  240  FEGLSPDQSLLPLSWNIFHGHNLVQEYFTCRQRFYFFTLTQLSQSLRDNHTGEAEIIILL  299
             EGL P+Q+LLPL+WN+FHGHNL++E+F+C +RFYFFT T LS +L+  +   AEI+ILL
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  300  DRLPQD-LVSHVAPSRFLLACTPVINLFPKRMDKIEINRALNDFHVVPDRSRPLDYEVFA  358
            +RLP D L+ +  +++F L CTPVINLFP+   +IE+ +++ + H+V DR+RPLDYEVF+
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  359  INKVFGQQAETSNEVVFNPLYQTRHCDNGNFGRYFSITRKARTGDSNKRKYDTRTPYAST  418
            ++ V G +AET+  ++F PLY+TR+ D+GN GRYFS+ R +R +  + R+Y+TRTPY+++
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGS  419

Query  419  EVFVSLVDQQEAPYGDSLRYLSIEAQVTNRDLPRLISASGNFELTMSDSAPVHGARFVFQ  478
            EVF+SLVDQ+EAPY ++LR +++ A VTNRDLP LI+ +G  +LT+  + PV G  ++  
Sbjct  420  EVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRP  479

Query  479  PSAPRAPFAMDESAWRLIRQLSFNYLPLSDMSHSNGGESLRNMLRLFVNASDHESNTQID  538
            P +P++P+A  E AWRLIRQLSFNYLPL+D+ H  GG++LR++L LF+ A D   + Q+ 
Sbjct  480  PRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVR  539

Query  539  ALVGCKSEPVIRRLPGNGLLVYGRGICCTLTVDEEGFSGISPYLFGMIMENYVARHAAIN  598
            +L+GCK+ PV RRLPG+GLLVYGRG+ C LTVDEEGFSGISPYLFG+++E+Y+ARH +IN
Sbjct  540  SLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSIN  599

Query  599  VFTETELNSMQRGRVGHWKARPGRRG  624
             F++  L+SMQRG+V  W  R G+RG
Sbjct  600  TFSQMTLHSMQRGHVMTWPVRTGQRG  625

67) YPA_2138 in NC_008150


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  647 bits (2446),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 345/626 (56%), Positives = 494/626 (79%), Gaps = 3/626 (0%)

Query  1    MDHKFLDYYNKELTFMREMAQEFAEKHPKIAGRLGMHGIEVADPYVERLIESFCFLSART  60
            MD ++L+YYN+EL+++RE + EFA  HPKIA+RLGM+G ++ADPYVER+IE+F FLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QIKLDAEFPKFTQRLLDIVYPNYNSPTPSMGVIQLKPNLKEGDLTQGYCVPRGSSFFTHI  120
            Q+K+DAEFP+FTQRLL++V PNY +PTPSM+V++L P+ +EGDL++G  VPR+++F + I
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  APGETTRCEFRSGQDVELWPLEIAEARLSSVPPDMPNLEKHRIAYHRLKGALRIKLKLVG  180
            + GE T C+FRS+QDV LWPL I E RL++ PPDMP L++   +  ++ GALRI L+  G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  DLTFSQLEGLDRLPIYIDGDERIVSHIFELLHASHVATII-RAGHGETAKDTVISDQPLS  239
            +L+FS+L G  RLP+Y+ G+ERI SH+FELLH+S VAT+   +GH +   +  + ++P++
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNL-QHPVA  239

Query  240  FEGLSPDQSLLPLSWNIFHGHNLVQEYFTCRQRFYFFTLTQLSQSLRDNHTGEAEIIILL  299
             EGL P+Q+LLPL+WN+FHGHNL++E+F+C +RFYFFT T LS +L+  +   AEI+ILL
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  300  DRLPQD-LVSHVAPSRFLLACTPVINLFPKRMDKIEINRALNDFHVVPDRSRPLDYEVFA  358
            +RLP D L+ +  +++F L CTPVINLFP+   +IE+ +++ + H+V DR+RPLDYEVF+
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  359  INKVFGQQAETSNEVVFNPLYQTRHCDNGNFGRYFSITRKARTGDSNKRKYDTRTPYAST  418
            ++ V G +AET+  ++F PLY+TR+ D+GN GRYFS+ R +R +  + R+Y+TRTPY+++
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGS  419

Query  419  EVFVSLVDQQEAPYGDSLRYLSIEAQVTNRDLPRLISASGNFELTMSDSAPVHGARFVFQ  478
            EVF+SLVDQ+EAPY ++LR +++ A VTNRDLP LI+ +G  +LT+  + PV G  ++  
Sbjct  420  EVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRP  479

Query  479  PSAPRAPFAMDESAWRLIRQLSFNYLPLSDMSHSNGGESLRNMLRLFVNASDHESNTQID  538
            P +P++P+A  E AWRLIRQLSFNYLPL+D+ H  GG++LR++L LF+ A D   + Q+ 
Sbjct  480  PRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVR  539

Query  539  ALVGCKSEPVIRRLPGNGLLVYGRGICCTLTVDEEGFSGISPYLFGMIMENYVARHAAIN  598
            +L+GCK+ PV RRLPG+GLLVYGRG+ C LTVDEEGFSGISPYLFG+++E+Y+ARH +IN
Sbjct  540  SLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSIN  599

Query  599  VFTETELNSMQRGRVGHWKARPGRRG  624
             F++  L+SMQRG+V  W  R G+RG
Sbjct  600  TFSQMTLHSMQRGHVMTWPVRTGQRG  625

68) YPC_1450 in NC_017265


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  647 bits (2446),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 345/626 (56%), Positives = 494/626 (79%), Gaps = 3/626 (0%)

Query  1    MDHKFLDYYNKELTFMREMAQEFAEKHPKIAGRLGMHGIEVADPYVERLIESFCFLSART  60
            MD ++L+YYN+EL+++RE + EFA  HPKIA+RLGM+G ++ADPYVER+IE+F FLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QIKLDAEFPKFTQRLLDIVYPNYNSPTPSMGVIQLKPNLKEGDLTQGYCVPRGSSFFTHI  120
            Q+K+DAEFP+FTQRLL++V PNY +PTPSM+V++L P+ +EGDL++G  VPR+++F + I
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  APGETTRCEFRSGQDVELWPLEIAEARLSSVPPDMPNLEKHRIAYHRLKGALRIKLKLVG  180
            + GE T C+FRS+QDV LWPL I E RL++ PPDMP L++   +  ++ GALRI L+  G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  DLTFSQLEGLDRLPIYIDGDERIVSHIFELLHASHVATII-RAGHGETAKDTVISDQPLS  239
            +L+FS+L G  RLP+Y+ G+ERI SH+FELLH+S VAT+   +GH +   +  + ++P++
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNL-QHPVA  239

Query  240  FEGLSPDQSLLPLSWNIFHGHNLVQEYFTCRQRFYFFTLTQLSQSLRDNHTGEAEIIILL  299
             EGL P+Q+LLPL+WN+FHGHNL++E+F+C +RFYFFT T LS +L+  +   AEI+ILL
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  300  DRLPQD-LVSHVAPSRFLLACTPVINLFPKRMDKIEINRALNDFHVVPDRSRPLDYEVFA  358
            +RLP D L+ +  +++F L CTPVINLFP+   +IE+ +++ + H+V DR+RPLDYEVF+
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  359  INKVFGQQAETSNEVVFNPLYQTRHCDNGNFGRYFSITRKARTGDSNKRKYDTRTPYAST  418
            ++ V G +AET+  ++F PLY+TR+ D+GN GRYFS+ R +R +  + R+Y+TRTPY+++
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGS  419

Query  419  EVFVSLVDQQEAPYGDSLRYLSIEAQVTNRDLPRLISASGNFELTMSDSAPVHGARFVFQ  478
            EVF+SLVDQ+EAPY ++LR +++ A VTNRDLP LI+ +G  +LT+  + PV G  ++  
Sbjct  420  EVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRP  479

Query  479  PSAPRAPFAMDESAWRLIRQLSFNYLPLSDMSHSNGGESLRNMLRLFVNASDHESNTQID  538
            P +P++P+A  E AWRLIRQLSFNYLPL+D+ H  GG++LR++L LF+ A D   + Q+ 
Sbjct  480  PRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVR  539

Query  539  ALVGCKSEPVIRRLPGNGLLVYGRGICCTLTVDEEGFSGISPYLFGMIMENYVARHAAIN  598
            +L+GCK+ PV RRLPG+GLLVYGRG+ C LTVDEEGFSGISPYLFG+++E+Y+ARH +IN
Sbjct  540  SLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSIN  599

Query  599  VFTETELNSMQRGRVGHWKARPGRRG  624
             F++  L+SMQRG+V  W  R G+RG
Sbjct  600  TFSQMTLHSMQRGHVMTWPVRTGQRG  625

69) YP_2574 in NC_005810


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  647 bits (2446),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 345/626 (56%), Positives = 494/626 (79%), Gaps = 3/626 (0%)

Query  1    MDHKFLDYYNKELTFMREMAQEFAEKHPKIAGRLGMHGIEVADPYVERLIESFCFLSART  60
            MD ++L+YYN+EL+++RE + EFA  HPKIA+RLGM+G ++ADPYVER+IE+F FLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QIKLDAEFPKFTQRLLDIVYPNYNSPTPSMGVIQLKPNLKEGDLTQGYCVPRGSSFFTHI  120
            Q+K+DAEFP+FTQRLL++V PNY +PTPSM+V++L P+ +EGDL++G  VPR+++F + I
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  APGETTRCEFRSGQDVELWPLEIAEARLSSVPPDMPNLEKHRIAYHRLKGALRIKLKLVG  180
            + GE T C+FRS+QDV LWPL I E RL++ PPDMP L++   +  ++ GALRI L+  G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  DLTFSQLEGLDRLPIYIDGDERIVSHIFELLHASHVATII-RAGHGETAKDTVISDQPLS  239
            +L+FS+L G  RLP+Y+ G+ERI SH+FELLH+S VAT+   +GH +   +  + ++P++
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNL-QHPVA  239

Query  240  FEGLSPDQSLLPLSWNIFHGHNLVQEYFTCRQRFYFFTLTQLSQSLRDNHTGEAEIIILL  299
             EGL P+Q+LLPL+WN+FHGHNL++E+F+C +RFYFFT T LS +L+  +   AEI+ILL
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  300  DRLPQD-LVSHVAPSRFLLACTPVINLFPKRMDKIEINRALNDFHVVPDRSRPLDYEVFA  358
            +RLP D L+ +  +++F L CTPVINLFP+   +IE+ +++ + H+V DR+RPLDYEVF+
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  359  INKVFGQQAETSNEVVFNPLYQTRHCDNGNFGRYFSITRKARTGDSNKRKYDTRTPYAST  418
            ++ V G +AET+  ++F PLY+TR+ D+GN GRYFS+ R +R +  + R+Y+TRTPY+++
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGS  419

Query  419  EVFVSLVDQQEAPYGDSLRYLSIEAQVTNRDLPRLISASGNFELTMSDSAPVHGARFVFQ  478
            EVF+SLVDQ+EAPY ++LR +++ A VTNRDLP LI+ +G  +LT+  + PV G  ++  
Sbjct  420  EVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRP  479

Query  479  PSAPRAPFAMDESAWRLIRQLSFNYLPLSDMSHSNGGESLRNMLRLFVNASDHESNTQID  538
            P +P++P+A  E AWRLIRQLSFNYLPL+D+ H  GG++LR++L LF+ A D   + Q+ 
Sbjct  480  PRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVR  539

Query  539  ALVGCKSEPVIRRLPGNGLLVYGRGICCTLTVDEEGFSGISPYLFGMIMENYVARHAAIN  598
            +L+GCK+ PV RRLPG+GLLVYGRG+ C LTVDEEGFSGISPYLFG+++E+Y+ARH +IN
Sbjct  540  SLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSIN  599

Query  599  VFTETELNSMQRGRVGHWKARPGRRG  624
             F++  L+SMQRG+V  W  R G+RG
Sbjct  600  TFSQMTLHSMQRGHVMTWPVRTGQRG  625

70) YPO2947 in NC_003143


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  647 bits (2446),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 345/626 (56%), Positives = 494/626 (79%), Gaps = 3/626 (0%)

Query  1    MDHKFLDYYNKELTFMREMAQEFAEKHPKIAGRLGMHGIEVADPYVERLIESFCFLSART  60
            MD ++L+YYN+EL+++RE + EFA  HPKIA+RLGM+G ++ADPYVER+IE+F FLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QIKLDAEFPKFTQRLLDIVYPNYNSPTPSMGVIQLKPNLKEGDLTQGYCVPRGSSFFTHI  120
            Q+K+DAEFP+FTQRLL++V PNY +PTPSM+V++L P+ +EGDL++G  VPR+++F + I
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  APGETTRCEFRSGQDVELWPLEIAEARLSSVPPDMPNLEKHRIAYHRLKGALRIKLKLVG  180
            + GE T C+FRS+QDV LWPL I E RL++ PPDMP L++   +  ++ GALRI L+  G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  DLTFSQLEGLDRLPIYIDGDERIVSHIFELLHASHVATII-RAGHGETAKDTVISDQPLS  239
            +L+FS+L G  RLP+Y+ G+ERI SH+FELLH+S VAT+   +GH +   +  + ++P++
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNL-QHPVA  239

Query  240  FEGLSPDQSLLPLSWNIFHGHNLVQEYFTCRQRFYFFTLTQLSQSLRDNHTGEAEIIILL  299
             EGL P+Q+LLPL+WN+FHGHNL++E+F+C +RFYFFT T LS +L+  +   AEI+ILL
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  300  DRLPQD-LVSHVAPSRFLLACTPVINLFPKRMDKIEINRALNDFHVVPDRSRPLDYEVFA  358
            +RLP D L+ +  +++F L CTPVINLFP+   +IE+ +++ + H+V DR+RPLDYEVF+
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  359  INKVFGQQAETSNEVVFNPLYQTRHCDNGNFGRYFSITRKARTGDSNKRKYDTRTPYAST  418
            ++ V G +AET+  ++F PLY+TR+ D+GN GRYFS+ R +R +  + R+Y+TRTPY+++
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGS  419

Query  419  EVFVSLVDQQEAPYGDSLRYLSIEAQVTNRDLPRLISASGNFELTMSDSAPVHGARFVFQ  478
            EVF+SLVDQ+EAPY ++LR +++ A VTNRDLP LI+ +G  +LT+  + PV G  ++  
Sbjct  420  EVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRP  479

Query  479  PSAPRAPFAMDESAWRLIRQLSFNYLPLSDMSHSNGGESLRNMLRLFVNASDHESNTQID  538
            P +P++P+A  E AWRLIRQLSFNYLPL+D+ H  GG++LR++L LF+ A D   + Q+ 
Sbjct  480  PRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVR  539

Query  539  ALVGCKSEPVIRRLPGNGLLVYGRGICCTLTVDEEGFSGISPYLFGMIMENYVARHAAIN  598
            +L+GCK+ PV RRLPG+GLLVYGRG+ C LTVDEEGFSGISPYLFG+++E+Y+ARH +IN
Sbjct  540  SLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSIN  599

Query  599  VFTETELNSMQRGRVGHWKARPGRRG  624
             F++  L+SMQRG+V  W  R G+RG
Sbjct  600  TFSQMTLHSMQRGHVMTWPVRTGQRG  625

71) y1537 in NC_004088


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  647 bits (2446),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 345/626 (56%), Positives = 494/626 (79%), Gaps = 3/626 (0%)

Query  1    MDHKFLDYYNKELTFMREMAQEFAEKHPKIAGRLGMHGIEVADPYVERLIESFCFLSART  60
            MD ++L+YYN+EL+++RE + EFA  HPKIA+RLGM+G ++ADPYVER+IE+F FLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QIKLDAEFPKFTQRLLDIVYPNYNSPTPSMGVIQLKPNLKEGDLTQGYCVPRGSSFFTHI  120
            Q+K+DAEFP+FTQRLL++V PNY +PTPSM+V++L P+ +EGDL++G  VPR+++F + I
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  APGETTRCEFRSGQDVELWPLEIAEARLSSVPPDMPNLEKHRIAYHRLKGALRIKLKLVG  180
            + GE T C+FRS+QDV LWPL I E RL++ PPDMP L++   +  ++ GALRI L+  G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  DLTFSQLEGLDRLPIYIDGDERIVSHIFELLHASHVATII-RAGHGETAKDTVISDQPLS  239
            +L+FS+L G  RLP+Y+ G+ERI SH+FELLH+S VAT+   +GH +   +  + ++P++
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNL-QHPVA  239

Query  240  FEGLSPDQSLLPLSWNIFHGHNLVQEYFTCRQRFYFFTLTQLSQSLRDNHTGEAEIIILL  299
             EGL P+Q+LLPL+WN+FHGHNL++E+F+C +RFYFFT T LS +L+  +   AEI+ILL
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  300  DRLPQD-LVSHVAPSRFLLACTPVINLFPKRMDKIEINRALNDFHVVPDRSRPLDYEVFA  358
            +RLP D L+ +  +++F L CTPVINLFP+   +IE+ +++ + H+V DR+RPLDYEVF+
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  359  INKVFGQQAETSNEVVFNPLYQTRHCDNGNFGRYFSITRKARTGDSNKRKYDTRTPYAST  418
            ++ V G +AET+  ++F PLY+TR+ D+GN GRYFS+ R +R +  + R+Y+TRTPY+++
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGS  419

Query  419  EVFVSLVDQQEAPYGDSLRYLSIEAQVTNRDLPRLISASGNFELTMSDSAPVHGARFVFQ  478
            EVF+SLVDQ+EAPY ++LR +++ A VTNRDLP LI+ +G  +LT+  + PV G  ++  
Sbjct  420  EVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRP  479

Query  479  PSAPRAPFAMDESAWRLIRQLSFNYLPLSDMSHSNGGESLRNMLRLFVNASDHESNTQID  538
            P +P++P+A  E AWRLIRQLSFNYLPL+D+ H  GG++LR++L LF+ A D   + Q+ 
Sbjct  480  PRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVR  539

Query  539  ALVGCKSEPVIRRLPGNGLLVYGRGICCTLTVDEEGFSGISPYLFGMIMENYVARHAAIN  598
            +L+GCK+ PV RRLPG+GLLVYGRG+ C LTVDEEGFSGISPYLFG+++E+Y+ARH +IN
Sbjct  540  SLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSIN  599

Query  599  VFTETELNSMQRGRVGHWKARPGRRG  624
             F++  L+SMQRG+V  W  R G+RG
Sbjct  600  TFSQMTLHSMQRGHVMTWPVRTGQRG  625

72) YPN_1433 in NC_008149


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  647 bits (2446),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 345/626 (56%), Positives = 494/626 (79%), Gaps = 3/626 (0%)

Query  1    MDHKFLDYYNKELTFMREMAQEFAEKHPKIAGRLGMHGIEVADPYVERLIESFCFLSART  60
            MD ++L+YYN+EL+++RE + EFA  HPKIA+RLGM+G ++ADPYVER+IE+F FLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QIKLDAEFPKFTQRLLDIVYPNYNSPTPSMGVIQLKPNLKEGDLTQGYCVPRGSSFFTHI  120
            Q+K+DAEFP+FTQRLL++V PNY +PTPSM+V++L P+ +EGDL++G  VPR+++F + I
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  APGETTRCEFRSGQDVELWPLEIAEARLSSVPPDMPNLEKHRIAYHRLKGALRIKLKLVG  180
            + GE T C+FRS+QDV LWPL I E RL++ PPDMP L++   +  ++ GALRI L+  G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  DLTFSQLEGLDRLPIYIDGDERIVSHIFELLHASHVATII-RAGHGETAKDTVISDQPLS  239
            +L+FS+L G  RLP+Y+ G+ERI SH+FELLH+S VAT+   +GH +   +  + ++P++
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNL-QHPVA  239

Query  240  FEGLSPDQSLLPLSWNIFHGHNLVQEYFTCRQRFYFFTLTQLSQSLRDNHTGEAEIIILL  299
             EGL P+Q+LLPL+WN+FHGHNL++E+F+C +RFYFFT T LS +L+  +   AEI+ILL
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  300  DRLPQD-LVSHVAPSRFLLACTPVINLFPKRMDKIEINRALNDFHVVPDRSRPLDYEVFA  358
            +RLP D L+ +  +++F L CTPVINLFP+   +IE+ +++ + H+V DR+RPLDYEVF+
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  359  INKVFGQQAETSNEVVFNPLYQTRHCDNGNFGRYFSITRKARTGDSNKRKYDTRTPYAST  418
            ++ V G +AET+  ++F PLY+TR+ D+GN GRYFS+ R +R +  + R+Y+TRTPY+++
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGS  419

Query  419  EVFVSLVDQQEAPYGDSLRYLSIEAQVTNRDLPRLISASGNFELTMSDSAPVHGARFVFQ  478
            EVF+SLVDQ+EAPY ++LR +++ A VTNRDLP LI+ +G  +LT+  + PV G  ++  
Sbjct  420  EVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRP  479

Query  479  PSAPRAPFAMDESAWRLIRQLSFNYLPLSDMSHSNGGESLRNMLRLFVNASDHESNTQID  538
            P +P++P+A  E AWRLIRQLSFNYLPL+D+ H  GG++LR++L LF+ A D   + Q+ 
Sbjct  480  PRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVR  539

Query  539  ALVGCKSEPVIRRLPGNGLLVYGRGICCTLTVDEEGFSGISPYLFGMIMENYVARHAAIN  598
            +L+GCK+ PV RRLPG+GLLVYGRG+ C LTVDEEGFSGISPYLFG+++E+Y+ARH +IN
Sbjct  540  SLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSIN  599

Query  599  VFTETELNSMQRGRVGHWKARPGRRG  624
             F++  L+SMQRG+V  W  R G+RG
Sbjct  600  TFSQMTLHSMQRGHVMTWPVRTGQRG  625

73) YPDSF_2055 in NC_009381


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  647 bits (2446),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 345/626 (56%), Positives = 494/626 (79%), Gaps = 3/626 (0%)

Query  1    MDHKFLDYYNKELTFMREMAQEFAEKHPKIAGRLGMHGIEVADPYVERLIESFCFLSART  60
            MD ++L+YYN+EL+++RE + EFA  HPKIA+RLGM+G ++ADPYVER+IE+F FLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QIKLDAEFPKFTQRLLDIVYPNYNSPTPSMGVIQLKPNLKEGDLTQGYCVPRGSSFFTHI  120
            Q+K+DAEFP+FTQRLL++V PNY +PTPSM+V++L P+ +EGDL++G  VPR+++F + I
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  APGETTRCEFRSGQDVELWPLEIAEARLSSVPPDMPNLEKHRIAYHRLKGALRIKLKLVG  180
            + GE T C+FRS+QDV LWPL I E RL++ PPDMP L++   +  ++ GALRI L+  G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  DLTFSQLEGLDRLPIYIDGDERIVSHIFELLHASHVATII-RAGHGETAKDTVISDQPLS  239
            +L+FS+L G  RLP+Y+ G+ERI SH+FELLH+S VAT+   +GH +   +  + ++P++
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNL-QHPVA  239

Query  240  FEGLSPDQSLLPLSWNIFHGHNLVQEYFTCRQRFYFFTLTQLSQSLRDNHTGEAEIIILL  299
             EGL P+Q+LLPL+WN+FHGHNL++E+F+C +RFYFFT T LS +L+  +   AEI+ILL
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  300  DRLPQD-LVSHVAPSRFLLACTPVINLFPKRMDKIEINRALNDFHVVPDRSRPLDYEVFA  358
            +RLP D L+ +  +++F L CTPVINLFP+   +IE+ +++ + H+V DR+RPLDYEVF+
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  359  INKVFGQQAETSNEVVFNPLYQTRHCDNGNFGRYFSITRKARTGDSNKRKYDTRTPYAST  418
            ++ V G +AET+  ++F PLY+TR+ D+GN GRYFS+ R +R +  + R+Y+TRTPY+++
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGS  419

Query  419  EVFVSLVDQQEAPYGDSLRYLSIEAQVTNRDLPRLISASGNFELTMSDSAPVHGARFVFQ  478
            EVF+SLVDQ+EAPY ++LR +++ A VTNRDLP LI+ +G  +LT+  + PV G  ++  
Sbjct  420  EVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRP  479

Query  479  PSAPRAPFAMDESAWRLIRQLSFNYLPLSDMSHSNGGESLRNMLRLFVNASDHESNTQID  538
            P +P++P+A  E AWRLIRQLSFNYLPL+D+ H  GG++LR++L LF+ A D   + Q+ 
Sbjct  480  PRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVR  539

Query  539  ALVGCKSEPVIRRLPGNGLLVYGRGICCTLTVDEEGFSGISPYLFGMIMENYVARHAAIN  598
            +L+GCK+ PV RRLPG+GLLVYGRG+ C LTVDEEGFSGISPYLFG+++E+Y+ARH +IN
Sbjct  540  SLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSIN  599

Query  599  VFTETELNSMQRGRVGHWKARPGRRG  624
             F++  L+SMQRG+V  W  R G+RG
Sbjct  600  TFSQMTLHSMQRGHVMTWPVRTGQRG  625

74) YpsIP31758_1361 in NC_009708


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  647 bits (2446),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 345/626 (56%), Positives = 494/626 (79%), Gaps = 3/626 (0%)

Query  1    MDHKFLDYYNKELTFMREMAQEFAEKHPKIAGRLGMHGIEVADPYVERLIESFCFLSART  60
            MD ++L+YYN+EL+++RE + EFA  HPKIA+RLGM+G ++ADPYVER+IE+F FLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QIKLDAEFPKFTQRLLDIVYPNYNSPTPSMGVIQLKPNLKEGDLTQGYCVPRGSSFFTHI  120
            Q+K+DAEFP+FTQRLL++V PNY +PTPSM+V++L P+ +EGDL++G  VPR+++F + I
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  APGETTRCEFRSGQDVELWPLEIAEARLSSVPPDMPNLEKHRIAYHRLKGALRIKLKLVG  180
            + GE T C+FRS+QDV LWPL I E RL++ PPDMP L++   +  ++ GALRI L+  G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  DLTFSQLEGLDRLPIYIDGDERIVSHIFELLHASHVATII-RAGHGETAKDTVISDQPLS  239
            +L+FS+L G  RLP+Y+ G+ERI SH+FELLH+S VAT+   +GH +   +  + ++P++
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNL-QHPVA  239

Query  240  FEGLSPDQSLLPLSWNIFHGHNLVQEYFTCRQRFYFFTLTQLSQSLRDNHTGEAEIIILL  299
             EGL P+Q+LLPL+WN+FHGHNL++E+F+C +RFYFFT T LS +L+  +   AEI+ILL
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  300  DRLPQD-LVSHVAPSRFLLACTPVINLFPKRMDKIEINRALNDFHVVPDRSRPLDYEVFA  358
            +RLP D L+ +  +++F L CTPVINLFP+   +IE+ +++ + H+V DR+RPLDYEVF+
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  359  INKVFGQQAETSNEVVFNPLYQTRHCDNGNFGRYFSITRKARTGDSNKRKYDTRTPYAST  418
            ++ V G +AET+  ++F PLY+TR+ D+GN GRYFS+ R +R +  + R+Y+TRTPY+++
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGS  419

Query  419  EVFVSLVDQQEAPYGDSLRYLSIEAQVTNRDLPRLISASGNFELTMSDSAPVHGARFVFQ  478
            EVF+SLVDQ+EAPY ++LR +++ A VTNRDLP LI+ +G  +LT+  + PV G  ++  
Sbjct  420  EVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRP  479

Query  479  PSAPRAPFAMDESAWRLIRQLSFNYLPLSDMSHSNGGESLRNMLRLFVNASDHESNTQID  538
            P +P++P+A  E AWRLIRQLSFNYLPL+D+ H  GG++LR++L LF+ A D   + Q+ 
Sbjct  480  PRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVR  539

Query  539  ALVGCKSEPVIRRLPGNGLLVYGRGICCTLTVDEEGFSGISPYLFGMIMENYVARHAAIN  598
            +L+GCK+ PV RRLPG+GLLVYGRG+ C LTVDEEGFSGISPYLFG+++E+Y+ARH +IN
Sbjct  540  SLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSIN  599

Query  599  VFTETELNSMQRGRVGHWKARPGRRG  624
             F++  L+SMQRG+V  W  R G+RG
Sbjct  600  TFSQMTLHSMQRGHVMTWPVRTGQRG  625

75) YPTB2672 in NC_006155


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  647 bits (2446),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 345/626 (56%), Positives = 494/626 (79%), Gaps = 3/626 (0%)

Query  1    MDHKFLDYYNKELTFMREMAQEFAEKHPKIAGRLGMHGIEVADPYVERLIESFCFLSART  60
            MD ++L+YYN+EL+++RE + EFA  HPKIA+RLGM+G ++ADPYVER+IE+F FLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QIKLDAEFPKFTQRLLDIVYPNYNSPTPSMGVIQLKPNLKEGDLTQGYCVPRGSSFFTHI  120
            Q+K+DAEFP+FTQRLL++V PNY +PTPSM+V++L P+ +EGDL++G  VPR+++F + I
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  APGETTRCEFRSGQDVELWPLEIAEARLSSVPPDMPNLEKHRIAYHRLKGALRIKLKLVG  180
            + GE T C+FRS+QDV LWPL I E RL++ PPDMP L++   +  ++ GALRI L+  G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  DLTFSQLEGLDRLPIYIDGDERIVSHIFELLHASHVATII-RAGHGETAKDTVISDQPLS  239
            +L+FS+L G  RLP+Y+ G+ERI SH+FELLH+S VAT+   +GH +   +  + ++P++
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNL-QHPVA  239

Query  240  FEGLSPDQSLLPLSWNIFHGHNLVQEYFTCRQRFYFFTLTQLSQSLRDNHTGEAEIIILL  299
             EGL P+Q+LLPL+WN+FHGHNL++E+F+C +RFYFFT T LS +L+  +   AEI+ILL
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  300  DRLPQD-LVSHVAPSRFLLACTPVINLFPKRMDKIEINRALNDFHVVPDRSRPLDYEVFA  358
            +RLP D L+ +  +++F L CTPVINLFP+   +IE+ +++ + H+V DR+RPLDYEVF+
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  359  INKVFGQQAETSNEVVFNPLYQTRHCDNGNFGRYFSITRKARTGDSNKRKYDTRTPYAST  418
            ++ V G +AET+  ++F PLY+TR+ D+GN GRYFS+ R +R +  + R+Y+TRTPY+++
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGS  419

Query  419  EVFVSLVDQQEAPYGDSLRYLSIEAQVTNRDLPRLISASGNFELTMSDSAPVHGARFVFQ  478
            EVF+SLVDQ+EAPY ++LR +++ A VTNRDLP LI+ +G  +LT+  + PV G  ++  
Sbjct  420  EVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRP  479

Query  479  PSAPRAPFAMDESAWRLIRQLSFNYLPLSDMSHSNGGESLRNMLRLFVNASDHESNTQID  538
            P +P++P+A  E AWRLIRQLSFNYLPL+D+ H  GG++LR++L LF+ A D   + Q+ 
Sbjct  480  PRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVR  539

Query  539  ALVGCKSEPVIRRLPGNGLLVYGRGICCTLTVDEEGFSGISPYLFGMIMENYVARHAAIN  598
            +L+GCK+ PV RRLPG+GLLVYGRG+ C LTVDEEGFSGISPYLFG+++E+Y+ARH +IN
Sbjct  540  SLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSIN  599

Query  599  VFTETELNSMQRGRVGHWKARPGRRG  624
             F++  L+SMQRG+V  W  R G+RG
Sbjct  600  TFSQMTLHSMQRGHVMTWPVRTGQRG  625

76) YPK_1473 in NC_010465


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  647 bits (2446),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 345/626 (56%), Positives = 494/626 (79%), Gaps = 3/626 (0%)

Query  1    MDHKFLDYYNKELTFMREMAQEFAEKHPKIAGRLGMHGIEVADPYVERLIESFCFLSART  60
            MD ++L+YYN+EL+++RE + EFA  HPKIA+RLGM+G ++ADPYVER+IE+F FLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QIKLDAEFPKFTQRLLDIVYPNYNSPTPSMGVIQLKPNLKEGDLTQGYCVPRGSSFFTHI  120
            Q+K+DAEFP+FTQRLL++V PNY +PTPSM+V++L P+ +EGDL++G  VPR+++F + I
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  APGETTRCEFRSGQDVELWPLEIAEARLSSVPPDMPNLEKHRIAYHRLKGALRIKLKLVG  180
            + GE T C+FRS+QDV LWPL I E RL++ PPDMP L++   +  ++ GALRI L+  G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  DLTFSQLEGLDRLPIYIDGDERIVSHIFELLHASHVATII-RAGHGETAKDTVISDQPLS  239
            +L+FS+L G  RLP+Y+ G+ERI SH+FELLH+S VAT+   +GH +   +  + ++P++
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNL-QHPVA  239

Query  240  FEGLSPDQSLLPLSWNIFHGHNLVQEYFTCRQRFYFFTLTQLSQSLRDNHTGEAEIIILL  299
             EGL P+Q+LLPL+WN+FHGHNL++E+F+C +RFYFFT T LS +L+  +   AEI+ILL
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  300  DRLPQD-LVSHVAPSRFLLACTPVINLFPKRMDKIEINRALNDFHVVPDRSRPLDYEVFA  358
            +RLP D L+ +  +++F L CTPVINLFP+   +IE+ +++ + H+V DR+RPLDYEVF+
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  359  INKVFGQQAETSNEVVFNPLYQTRHCDNGNFGRYFSITRKARTGDSNKRKYDTRTPYAST  418
            ++ V G +AET+  ++F PLY+TR+ D+GN GRYFS+ R +R +  + R+Y+TRTPY+++
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGS  419

Query  419  EVFVSLVDQQEAPYGDSLRYLSIEAQVTNRDLPRLISASGNFELTMSDSAPVHGARFVFQ  478
            EVF+SLVDQ+EAPY ++LR +++ A VTNRDLP LI+ +G  +LT+  + PV G  ++  
Sbjct  420  EVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRP  479

Query  479  PSAPRAPFAMDESAWRLIRQLSFNYLPLSDMSHSNGGESLRNMLRLFVNASDHESNTQID  538
            P +P++P+A  E AWRLIRQLSFNYLPL+D+ H  GG++LR++L LF+ A D   + Q+ 
Sbjct  480  PRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVR  539

Query  539  ALVGCKSEPVIRRLPGNGLLVYGRGICCTLTVDEEGFSGISPYLFGMIMENYVARHAAIN  598
            +L+GCK+ PV RRLPG+GLLVYGRG+ C LTVDEEGFSGISPYLFG+++E+Y+ARH +IN
Sbjct  540  SLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSIN  599

Query  599  VFTETELNSMQRGRVGHWKARPGRRG  624
             F++  L+SMQRG+V  W  R G+RG
Sbjct  600  TFSQMTLHSMQRGHVMTWPVRTGQRG  625

77) BMAA1904 in NC_006349


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  646 bits (2441),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 385/631 (62%), Positives = 511/631 (81%), Gaps = 6/631 (0%)

Query  1    MDPQLLDYYNQELIYMRELGAEFARAHPKIARRLGMQAGEVADPYVERLIESFCFMAARM  60
            MDP+LL+YYN+EL Y+RE GAEFA  HPKIA RLGMQ+ ++ADPYVER+IE+F F++AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QIKLDAEFPRFTGRLLEVLYPNYVAPTPSMAVARLYPSRTEGNLAQGFRVARGTAFAARV  120
            Q+K+DAEFPRFT RLLEV+ PNYV+PTPSMAV +LYP   EG+LA+G  V+R+TAF + +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PAGEKTACRFRSGQDVTLYPLEIADARLTGIPPDIPALDRYVPAGAQVRGAlrlrlrTTG  180
            P GE+TAC+FRS+QDVTL PL I + RLT+ PPD+PAL+RY+P+  +V GALR+ LRT G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  NMRIADLRGLDRLPLYLAGDAQVASHLFELLHVAGVATLTAAPGEFAAPGRPPAAVTVD-  239
            ++ +++L G  RLP+YL G+ ++ASHLFELLH ++VATL++ PG+F +       V ++ 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGE----LNVNLQH  236

Query  240  ALAHEGLGADEGLLPLTWAKFHGHNLLHEYFACPERFYFVALTGLEEGLRRIAGSEVEIV  299
            ++AHEGL +++GLLPL+W  FHGHNLLHE+FACPERFYF + TGL  GL+++ G+  EIV
Sbjct  237  PVAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIV  296

Query  300  VLLEQ-SPERLADVVDASRFALFCTPVINLFPRHMDRIELSSGQTECHLVPARLAPLDYE  358
            +LL++ +P++L +  DA++F+LFCTPVINLFPR   RIE++ + TE HLV  R  PLDYE
Sbjct  297  ILLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYE  356

Query  359  VFSVEAMYGQVAATSAELEFRPLYQTLNDDESNYGRYFSTRRERRLVSDFARRYGTRTPY  418
            VFSV+ + G  A T+  + FRPLY+T N+DE+N GRYFS RRE R  S+ ARRYGTRTPY
Sbjct  357  VFSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPY  416

Query  419  VGTEMFVSLVDQNEAPYSEDIRYLSVDALVTNRDLPSLVPRDGVRDLTAIESAPIDSVGL  478
             G+E+F+SLVDQ+EAPY+E++R ++V A+VTNRDLP L+PR+G  DLT   + P+ +VGL
Sbjct  417  TGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGL  476

Query  479  IRAPSAPKAPYAEREIAWRLIRQLNFNYLPLDELDHraggqglrgllrlflagDEADSRR  538
            IR+P +P++P AERE+AWRLIRQL+FNYLPL +LDHR+GGQ+LR+LL LF++++++   R
Sbjct  477  IRPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSR  536

Query  539  QVESLVGVKTRPVTRKLPGAGPLVFGRGVECALSVDETGFSGVSPYLFGLVLEHYLARHV  598
            QV SL+G KT PVTR+LPG+G LV+GRGV C L+VDE GFSG+SPYLFGLVLEHY+ARHV
Sbjct  537  QVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHV  596

Query  599  SINVFTQTELNSIQRGCIARWPVRMGARGGA  629
            SIN F+Q  L+S+QRG +  WPVR G RG+ 
Sbjct  597  SINTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

78) BMA10229_1202 in NC_008835


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  646 bits (2441),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 385/631 (62%), Positives = 511/631 (81%), Gaps = 6/631 (0%)

Query  1    MDPQLLDYYNQELIYMRELGAEFARAHPKIARRLGMQAGEVADPYVERLIESFCFMAARM  60
            MDP+LL+YYN+EL Y+RE GAEFA  HPKIA RLGMQ+ ++ADPYVER+IE+F F++AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QIKLDAEFPRFTGRLLEVLYPNYVAPTPSMAVARLYPSRTEGNLAQGFRVARGTAFAARV  120
            Q+K+DAEFPRFT RLLEV+ PNYV+PTPSMAV +LYP   EG+LA+G  V+R+TAF + +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PAGEKTACRFRSGQDVTLYPLEIADARLTGIPPDIPALDRYVPAGAQVRGAlrlrlrTTG  180
            P GE+TAC+FRS+QDVTL PL I + RLT+ PPD+PAL+RY+P+  +V GALR+ LRT G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  NMRIADLRGLDRLPLYLAGDAQVASHLFELLHVAGVATLTAAPGEFAAPGRPPAAVTVD-  239
            ++ +++L G  RLP+YL G+ ++ASHLFELLH ++VATL++ PG+F +       V ++ 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGE----LNVNLQH  236

Query  240  ALAHEGLGADEGLLPLTWAKFHGHNLLHEYFACPERFYFVALTGLEEGLRRIAGSEVEIV  299
            ++AHEGL +++GLLPL+W  FHGHNLLHE+FACPERFYF + TGL  GL+++ G+  EIV
Sbjct  237  PVAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIV  296

Query  300  VLLEQ-SPERLADVVDASRFALFCTPVINLFPRHMDRIELSSGQTECHLVPARLAPLDYE  358
            +LL++ +P++L +  DA++F+LFCTPVINLFPR   RIE++ + TE HLV  R  PLDYE
Sbjct  297  ILLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYE  356

Query  359  VFSVEAMYGQVAATSAELEFRPLYQTLNDDESNYGRYFSTRRERRLVSDFARRYGTRTPY  418
            VFSV+ + G  A T+  + FRPLY+T N+DE+N GRYFS RRE R  S+ ARRYGTRTPY
Sbjct  357  VFSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPY  416

Query  419  VGTEMFVSLVDQNEAPYSEDIRYLSVDALVTNRDLPSLVPRDGVRDLTAIESAPIDSVGL  478
             G+E+F+SLVDQ+EAPY+E++R ++V A+VTNRDLP L+PR+G  DLT   + P+ +VGL
Sbjct  417  TGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGL  476

Query  479  IRAPSAPKAPYAEREIAWRLIRQLNFNYLPLDELDHraggqglrgllrlflagDEADSRR  538
            IR+P +P++P AERE+AWRLIRQL+FNYLPL +LDHR+GGQ+LR+LL LF++++++   R
Sbjct  477  IRPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSR  536

Query  539  QVESLVGVKTRPVTRKLPGAGPLVFGRGVECALSVDETGFSGVSPYLFGLVLEHYLARHV  598
            QV SL+G KT PVTR+LPG+G LV+GRGV C L+VDE GFSG+SPYLFGLVLEHY+ARHV
Sbjct  537  QVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHV  596

Query  599  SINVFTQTELNSIQRGCIARWPVRMGARGGA  629
            SIN F+Q  L+S+QRG +  WPVR G RG+ 
Sbjct  597  SINTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

79) BMA10247_A2177 in NC_009079


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  646 bits (2441),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 385/631 (62%), Positives = 511/631 (81%), Gaps = 6/631 (0%)

Query  1    MDPQLLDYYNQELIYMRELGAEFARAHPKIARRLGMQAGEVADPYVERLIESFCFMAARM  60
            MDP+LL+YYN+EL Y+RE GAEFA  HPKIA RLGMQ+ ++ADPYVER+IE+F F++AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QIKLDAEFPRFTGRLLEVLYPNYVAPTPSMAVARLYPSRTEGNLAQGFRVARGTAFAARV  120
            Q+K+DAEFPRFT RLLEV+ PNYV+PTPSMAV +LYP   EG+LA+G  V+R+TAF + +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PAGEKTACRFRSGQDVTLYPLEIADARLTGIPPDIPALDRYVPAGAQVRGAlrlrlrTTG  180
            P GE+TAC+FRS+QDVTL PL I + RLT+ PPD+PAL+RY+P+  +V GALR+ LRT G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  NMRIADLRGLDRLPLYLAGDAQVASHLFELLHVAGVATLTAAPGEFAAPGRPPAAVTVD-  239
            ++ +++L G  RLP+YL G+ ++ASHLFELLH ++VATL++ PG+F +       V ++ 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGE----LNVNLQH  236

Query  240  ALAHEGLGADEGLLPLTWAKFHGHNLLHEYFACPERFYFVALTGLEEGLRRIAGSEVEIV  299
            ++AHEGL +++GLLPL+W  FHGHNLLHE+FACPERFYF + TGL  GL+++ G+  EIV
Sbjct  237  PVAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIV  296

Query  300  VLLEQ-SPERLADVVDASRFALFCTPVINLFPRHMDRIELSSGQTECHLVPARLAPLDYE  358
            +LL++ +P++L +  DA++F+LFCTPVINLFPR   RIE++ + TE HLV  R  PLDYE
Sbjct  297  ILLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYE  356

Query  359  VFSVEAMYGQVAATSAELEFRPLYQTLNDDESNYGRYFSTRRERRLVSDFARRYGTRTPY  418
            VFSV+ + G  A T+  + FRPLY+T N+DE+N GRYFS RRE R  S+ ARRYGTRTPY
Sbjct  357  VFSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPY  416

Query  419  VGTEMFVSLVDQNEAPYSEDIRYLSVDALVTNRDLPSLVPRDGVRDLTAIESAPIDSVGL  478
             G+E+F+SLVDQ+EAPY+E++R ++V A+VTNRDLP L+PR+G  DLT   + P+ +VGL
Sbjct  417  TGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGL  476

Query  479  IRAPSAPKAPYAEREIAWRLIRQLNFNYLPLDELDHraggqglrgllrlflagDEADSRR  538
            IR+P +P++P AERE+AWRLIRQL+FNYLPL +LDHR+GGQ+LR+LL LF++++++   R
Sbjct  477  IRPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSR  536

Query  539  QVESLVGVKTRPVTRKLPGAGPLVFGRGVECALSVDETGFSGVSPYLFGLVLEHYLARHV  598
            QV SL+G KT PVTR+LPG+G LV+GRGV C L+VDE GFSG+SPYLFGLVLEHY+ARHV
Sbjct  537  QVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHV  596

Query  599  SINVFTQTELNSIQRGCIARWPVRMGARGGA  629
            SIN F+Q  L+S+QRG +  WPVR G RG+ 
Sbjct  597  SINTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

80) BMASAVP1_0915 in NC_008784


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  646 bits (2441),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 385/631 (62%), Positives = 511/631 (81%), Gaps = 6/631 (0%)

Query  1    MDPQLLDYYNQELIYMRELGAEFARAHPKIARRLGMQAGEVADPYVERLIESFCFMAARM  60
            MDP+LL+YYN+EL Y+RE GAEFA  HPKIA RLGMQ+ ++ADPYVER+IE+F F++AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QIKLDAEFPRFTGRLLEVLYPNYVAPTPSMAVARLYPSRTEGNLAQGFRVARGTAFAARV  120
            Q+K+DAEFPRFT RLLEV+ PNYV+PTPSMAV +LYP   EG+LA+G  V+R+TAF + +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PAGEKTACRFRSGQDVTLYPLEIADARLTGIPPDIPALDRYVPAGAQVRGAlrlrlrTTG  180
            P GE+TAC+FRS+QDVTL PL I + RLT+ PPD+PAL+RY+P+  +V GALR+ LRT G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  NMRIADLRGLDRLPLYLAGDAQVASHLFELLHVAGVATLTAAPGEFAAPGRPPAAVTVD-  239
            ++ +++L G  RLP+YL G+ ++ASHLFELLH ++VATL++ PG+F +       V ++ 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGE----LNVNLQH  236

Query  240  ALAHEGLGADEGLLPLTWAKFHGHNLLHEYFACPERFYFVALTGLEEGLRRIAGSEVEIV  299
            ++AHEGL +++GLLPL+W  FHGHNLLHE+FACPERFYF + TGL  GL+++ G+  EIV
Sbjct  237  PVAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIV  296

Query  300  VLLEQ-SPERLADVVDASRFALFCTPVINLFPRHMDRIELSSGQTECHLVPARLAPLDYE  358
            +LL++ +P++L +  DA++F+LFCTPVINLFPR   RIE++ + TE HLV  R  PLDYE
Sbjct  297  ILLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYE  356

Query  359  VFSVEAMYGQVAATSAELEFRPLYQTLNDDESNYGRYFSTRRERRLVSDFARRYGTRTPY  418
            VFSV+ + G  A T+  + FRPLY+T N+DE+N GRYFS RRE R  S+ ARRYGTRTPY
Sbjct  357  VFSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPY  416

Query  419  VGTEMFVSLVDQNEAPYSEDIRYLSVDALVTNRDLPSLVPRDGVRDLTAIESAPIDSVGL  478
             G+E+F+SLVDQ+EAPY+E++R ++V A+VTNRDLP L+PR+G  DLT   + P+ +VGL
Sbjct  417  TGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGL  476

Query  479  IRAPSAPKAPYAEREIAWRLIRQLNFNYLPLDELDHraggqglrgllrlflagDEADSRR  538
            IR+P +P++P AERE+AWRLIRQL+FNYLPL +LDHR+GGQ+LR+LL LF++++++   R
Sbjct  477  IRPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSR  536

Query  539  QVESLVGVKTRPVTRKLPGAGPLVFGRGVECALSVDETGFSGVSPYLFGLVLEHYLARHV  598
            QV SL+G KT PVTR+LPG+G LV+GRGV C L+VDE GFSG+SPYLFGLVLEHY+ARHV
Sbjct  537  QVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHV  596

Query  599  SINVFTQTELNSIQRGCIARWPVRMGARGGA  629
            SIN F+Q  L+S+QRG +  WPVR G RG+ 
Sbjct  597  SINTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

81) Bphy_6119 in NC_010625


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  645 bits (2437),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 368/628 (59%), Positives = 501/628 (80%), Gaps = 4/628 (0%)

Query  1    MDPRLLEYYNHELIYMRELASEFGRHHPKIGARLGMQAGEIGDPYVERLLESFCFMAARM  60
            MDPRLLEYYN+EL Y+RE ++EF+  HPKI+ARLGMQ+ +I+DPYVER++E+F F++AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QIKIDAEFPKFTGRLLEVIYPNYVAPTPSISVARIYPSPKEGNLNRGFQLPRGTMFKARK  120
            Q+KIDAEFP+FT RLLEV+ PNYV+PTPS++V ++YP  +EG+L +G  +PR+T F +  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PAGEKTLCQFRSGLDVTLYPLGISEAKLTAIPPDVVGLDRYIPPDRQVRGALRIRFRTTN  180
            P GE+T CQFRS+ DVTL PL+I E +LTA PPD+ +L+RY+PP+ +V GALRI +RT  
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  GSRISDLQGLNHLPIYLAGDEQVASHLFELLHAANVALVIGEPGQFGSGDKPLSVVTSNP  240
               +S+L G  +LP+YL G+E++ASHLFELLH++ VA + GEPG+F++    L+V   +P
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGE---LNVNLQHP  237

Query  241  VAHegigigegllPLTWSKFHGHNLLHEYFACPSRFYFFALTGLAQGFSRINGPEVEVIV  300
            VAHEG+  G+GLLPL+W+ FHGHNLLHE+FACP RFYFF+ TGL+ G+ +++G   E+++
Sbjct  238  VAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVI  297

Query  301  LLDQ-PTERLANLVDASRFALFCTPVVNLFEKRTDQIEIPQGESEVRLVPSKLEPLDYEV  359
            LL++ P ++L +  DA++F+LFCTPV+NLF + T +IE+ ++ +E +LV  +  PLDYEV
Sbjct  298  LLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEV  357

Query  360  FAIQKLCGQKTSNSAELEFRPLFQTLNNDEGNYGRYFSSRRERRLASDNSRRYGTRTPYI  419
            F++Q + G  +  +  + FRPL++T NNDEGN GRYFS RRE R +S+++RRYGTRTPY 
Sbjct  358  FSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYT  417

Query  420  GTEMFVTLVDQTEAPYNGDIRYLSADAWVTNRDLPLLVPRNGVDDLDGNDEDSIQSIGLI  479
            G+E+F++LVDQ EAPY  ++R ++  A VTNRDLP L+PRNG DDL  +   ++ ++GLI
Sbjct  418  GSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLI  477

Query  480  rppspprppYAEREMAWRLIRQLNFNYLPFSDMDHREGGQGLRDLLRLFLASDDTERQRQ  539
            RPP PP+PP AEREMAWRLIRQL+FNYLP++D+DHR GGQ+LRDLL LF++++D+ + RQ
Sbjct  478  RPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQ  537

Query  540  VEALIGVKTEPVNDMLPGNGPLVFGRGIECVLTVDETGFSGVSPYLLGLILEHYMARHVS  599
            V +LIG KT PV   LPG+G LV+GRG+ C LTVDE GFSG+SPYL+GL+LEHY+ARHVS
Sbjct  538  VRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVS  597

Query  600  INSFTQTELHSMQRGLVARWPVRMGTRG  627
            IN+F+Q  LHSMQRG V  WPVR G RG
Sbjct  598  INTFSQMTLHSMQRGHVMTWPVRTGQRG  625

82) BDL_6069 in NC_021877


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  642 bits (2427),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 381/627 (61%), Positives = 508/627 (82%), Gaps = 6/627 (0%)

Query  1    MLDYYNQELIYMRELGAEFARAHPKIARRLGMQAGEVADPYVERLIESFCFMAARMQIKL  60
            +L+YYN+EL Y+RE GAEFA  HPKIA RLGMQ+ ++ADPYVER+IE+F F++AR Q+K+
Sbjct  5    LLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSARTQLKI  64

Query  61   DAEFPRFTGRLLEVLYPNYVAPTPSMAVARLYPSRTEGNLAQGFRVARGTAFAARVPAGE  120
            DAEFPRFT RLLEV+ PNYV+PTPSMAV +LYP   EG+LA+G  V+R+TAF + +P GE
Sbjct  65   DAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPIPEGE  124

Query  121  KTACRFRSGQDVTLYPLEIADARLTGIPPDIPALDRYVPAGAQVRGAlrlrlrTTGNMRI  180
            +TAC+FRS+QDVTL PL I + RLT+ PPD+PAL+RY+P+  +V GALR+ LRT G++ +
Sbjct  125  NTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFGELAF  184

Query  181  ADLRGLDRLPLYLAGDAQVASHLFELLHVAGVATLTAAPGEFAAPGRPPAAVTVD-ALAH  239
            ++L G  RLP+YL G+ ++ASHLFELLH ++VATL++ PG+F +       V ++ ++AH
Sbjct  185  SELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGE----LNVNLQHPVAH  240

Query  240  EGLGADEGLLPLTWAKFHGHNLLHEYFACPERFYFVALTGLEEGLRRIAGSEVEIVVLLE  299
            EGL +++GLLPL+W  FHGHNLLHE+FACPERFYF + TGL  GL+++ G+  EIV+LL+
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  300  Q-SPERLADVVDASRFALFCTPVINLFPRHMDRIELSSGQTECHLVPARLAPLDYEVFSV  358
            + +P++L +  DA++F+LFCTPVINLFPR   RIE++ + TE HLV  R  PLDYEVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  359  EAMYGQVAATSAELEFRPLYQTLNDDESNYGRYFSTRRERRLVSDFARRYGTRTPYVGTE  418
            + + G  A T+  + FRPLY+T N+DE+N GRYFS RRE R  S+ ARRYGTRTPY G+E
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  419  MFVSLVDQNEAPYSEDIRYLSVDALVTNRDLPSLVPRDGVRDLTAIESAPIDSVGLIRAP  478
            +F+SLVDQ+EAPY+E++R ++V A+VTNRDLP L+PR+G  DLT   + P+ +VGLIR+P
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  479  SAPKAPYAEREIAWRLIRQLNFNYLPLDELDHraggqglrgllrlflagDEADSRRQVES  538
             +P++P AERE+AWRLIRQL+FNYLPL +LDHR+GGQ+LR+LL LF++++++   RQV S
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  539  LVGVKTRPVTRKLPGAGPLVFGRGVECALSVDEAGFSGVSPYLFGLVLEHYLARHVSINV  598
            L+G KT PVTR+LPG+G LV+GRGV C L+VDE GFSG+SPYLFGLVLEHY+ARHVSIN 
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  599  FTQTELNSIQRGRIARWPVRMGARGGA  625
            F+Q  L+S+QRG++  WPVR G RG+ 
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

83) CTU_12100 in NC_013282


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  639 bits (2414),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 353/625 (57%), Positives = 484/625 (78%), Gaps = 1/625 (0%)

Query  1    MDNKFLDYYNKELTYMREMAQEFASRHPKIAARLGMHGLEIADPYVERLIEAFCFMSARM  60
            MD ++L+YYN+EL+Y+RE + EFA+ HPKIAARLGM+G +IADPYVER+IEAF F+SAR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QIKLDAEFPLFTQRLLDIIYPNYTSPIPSMGVVQLKPDLKEGDLTQGYVVPRSSAFYTPI  120
            Q+K+DAEFP FTQRLL+++ PNY +P PSM+VV+L PD +EGDL++G  VPR +AF +PI
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  APGEATRCEFRSGHNVTLWPLEIVEARLTSLPPDIPASAKFNLPLQRLKGALRIRLKLHD  180
            + GE T C+FRS+++VTLWPL I E RLT+ PPD+PA  ++  P  ++ GALRI L+  +
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  GLHFSQLSGFEQLPIYIDGDERVVSRIFELIHTANVAMMIRGKSHAGIEDTLVTEEPLAF  240
             L FS+L+G  +LP+Y+ G+ER+ S++FEL+HT+ VA +    +H + E  +  ++P+A 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  EGLTPEQRLLPAQWNIFHGHTLLQEYFACRQRFYFFTLTQLSKGLKKIESNEAEIIILLD  300
            EGL P Q LLP  WN+FHGH LL+E+FAC +RFYFFT T LS GL+K+++N AEI+ILL+
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  NAPQD-LVSHITASRFLLFCTPVINLFPKQMDKVEINRALNEFHVVADRSRPLDYEVFSI  359
              P D L+ +  A++F LFCTPVINLFP+   ++E+ +++ E H+V DR+RPLDYEVFS+
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  360  NNVIGQQAETSNEVVFNPLFQTRHYHHGNAGRYFSYTRRPRTQEKSARHYETRTSYRGTE  419
            ++V G +AET+  ++F PL++TR+ ++GN GRYFS  R PR    SAR+Y TRT+Y G+E
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  420  VFISLVDQHEAPYGDAIRYLSVDALVTNRDLPALLSRTGNFELTMTDAAPVEGARFVCTP  479
            VF+SLVDQHEAPY + +R ++V A+VTNRDLP L++R G  +LT+  A PV G  ++  P
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  480  SVPQPPFAEDESAWRLIRQLSFNYQPLADMDHSPGGEALRKMLRLFVSQYDSEANTHIDA  539
              PQPP+AE E AWRLIRQLSFNY PLAD+DH  GG+ALR +L LF++  DS  + ++ +
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  540  LVGCKSEPVIRRLPDNGLLIYGRGVRCTLTVDERGFSGISPYLFGLIMENYVARHAAINV  599
            L+GCK+ PV RRLP++GLL+YGRGV C LTVDE GFSGISPYLFGL++E+Y+ARH +IN 
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  600  FTETELVSMQRGRISCWKARPGRRG  624
            F++  L SMQRG++  W  R G+RG
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRG  625

84) impG in NC_017933


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  638 bits (2410),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 349/625 (56%), Positives = 480/625 (77%), Gaps = 1/625 (0%)

Query  1    MDNKFLDYYNKELTYMREMAQEFALQHPKIAARLGMHGIEIADPYVERLIEAFCFMSARV  60
            MD ++L+YYN+EL+Y+RE + EFA  HPKIAARLGM+G +IADPYVER+IEAF F+SAR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QIKLDAGFPQFTQRLLDIIYPNYTSPVPSMGVVQLKPDFKEGDLTHGYTVARHSAFYSPI  120
            Q+K+DA FP+FTQRLL+++ PNY +P PSM+VV+L PD +EGDL+ G TV+R++AF SPI
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  APGEATRCEFRNGHAVTLWPLEITEARLTSLPPDIPSTAKFVLPVQRLKGALRIKLKLHE  180
            + GE T C+FR+++ VTLWPL I E RLT+ PPD+P+  +++ P  ++ GALRI L+   
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  NLRFSQLAGLEQLPVYIDGDERVVSHIFELIHTAHVAMMIHGKTSAGNVDTLVTEMPLTF  240
            +L FS+LAG  +LP Y+ G+ER+ SH+FEL+HT+ VA +       +    +  + P++ 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  EGLNPEQSLLPAQWNIFHGHTLLQEYFTCRQRFYFFTLTQLSEGLKKIDSNEAEIIILLD  300
            EGL+P Q+LLP  WN+FHGH LL+E+F+C +RFYFFT T LS GL+K+++N AEI+ILL+
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  NAPQD-LVAHITAARFLLFCTPVINLFPKQMDRIEINRALNEFHVVADRSRPLDYEIFSI  359
              P D L+ +  AA+F LFCTPVINLFP+   RIE+ +++ E H+V DR+RPLDYE+FS+
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  360  SKVAGQQAESSNEVTFSPLFQTRHYPHGNAGRYFSHTRRPRTLDKNVRHYETRTSYRGTE  419
              V G +AE++  + F PL++TR+  +GN GRYFS  R PR    + R+Y TRT+Y G+E
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  420  VFISLVDQHEAPFSDDLRYLSVDALVTNRDLPVLLSRSGHFDLTMTDAAPVESARFVCAP  479
            VF+SLVDQHEAP++++LR ++V A+VTNRDLP L++R+G+ DLT+  A PV +  ++ +P
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  480  SFPHSPFAEGESAWRLIRQLSFNYQPLADMDHSTGGEALRKMLRLFISHSDHEASTQIDA  539
              P++P+AE E AWRLIRQLSFNY PLAD+DH TGG+ALR +L LFI+  D   S Q+ +
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  540  LVGCKSEPIVRRLPDDGLLIYGRGVRCTLTVDEAGFSGISPYLFGLIMENYIARHAAINV  599
            L+GCK+ P+ RRLP+ GLL+YGRGV C LTVDE GFSGISPYLFGL++E+YIARH +IN 
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  600  FTETELVSMQRGRISRWKARPGRRG  624
            F++  L SMQRG++  W  R G+RG
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRG  625

85) YE105_C1590 in NC_015224


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  632 bits (2389),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 345/610 (57%), Positives = 478/610 (79%), Gaps = 1/610 (0%)

Query  1    MREMAQEFADKHPKIAGRLGMHGIEVADPYVERLIESFCFLSARTQIKLDAEFPKFTQRL  60
            +RE + EFA  HPKIA+RLGM+G ++ADPYVER+IE+F FLSARTQ+K+DAEFP+FTQRL
Sbjct  16   LRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSARTQLKIDAEFPRFTQRL  75

Query  61   LDIVYPNYNSPTPSMGVIQLKPNLKEGDLTQGYNVPRGSSFFTHIAPGETTRCEFRSGQD  120
            L++V PNY +PTPSM+V++L P+ +EGDL++G  VPR+++F + I+ GE T C+FRS+QD
Sbjct  76   LEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPIPEGENTACQFRSSQD  135

Query  121  VGLWPLEITEARLSSIPPDMPNLEKHRIAYHRLKGALRIKLKLVGDLQFSQLAGLDRLPI  180
            V LWPL I E RL++ PPDMP L++   +  ++ GALRI L+  G+L FS+LAG  RLP+
Sbjct  136  VTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFGELAFSELAGPARLPF  195

Query  181  YINGDERIVSHIFELLHASHVATIIRAGHGVTAEDTVISNDALAFEGLSPDQSLLPLSWN  240
            Y+ G+ERI SH+FELLH+S VAT+        +E  V  ++++A EGL P+Q+LLPL+WN
Sbjct  196  YLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAHEGLEPGQGLLPLAWN  255

Query  241  IFHGHNLMQEYFTCRQRFYFFTLTQLSKSLSNNHTNEAEIIILLDRLPQE-LVSHVAPSR  299
            +FHGHNL++E+F+C +RFYFFT T LS +L + + N AEI+ILL+RLP + L+ +  +++
Sbjct  256  VFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLNRLPPDWLIHQTDAAQ  315

Query  300  FLLNCTPVINLFQKRMDKIEINRALNDFHVVPDRSRPLDYEVFSITKVFGQQAETSKEVV  359
            F L CTPVINLF +   +IE+ +++ + H+V DR+RPLDYEVFS+  V G +AET++ ++
Sbjct  316  FSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSVQEVEGLEAETTRKMI  375

Query  360  FNPLYQTRHCDNGNFGRYFSITRKPRTSQNNKRKYDTRTPYASTEVFVSLVDQQEAPYGD  419
            F PLY+TR+ D+GN GRYFS+ R PR S ++ R+Y+TRTPY+++EVF+SLVDQ+EAPY +
Sbjct  376  FRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSEVFLSLVDQHEAPYPE  435

Query  420  NLRYLSIEAQVTNRDLPRLITSNGNFELTMSDSAPVHGAHFVFQPSPPRAPFAIDESAWR  479
            NLR +++ A VTNRDLP LI  NG  +LT+  + PV G  ++  P PP++P+A  E AWR
Sbjct  436  NLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPPRPPQPPLAEREMAWR  495

Query  480  LIRQLSFNYLPLSDMTHANGGESLRNMLRLFVSASDLESNTQIDALVGCKSEPVIRRLPG  539
            LIRQLSFNYLPL+D+ H  GG++LR++L LF++A D   + Q+ +L+GCK+ PV RRLPG
Sbjct  496  LIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRSLIGCKTTPVTRRLPG  555

Query  540  NGLLVYGRGICCTLTVDEEGFSGISPYLFGLIMENYLARHAAINVFTETELHSMQRGRVG  599
            +GLLVYGRG+ C LTVDEEGFSGISPYLFGL++E+Y+ARH +IN F++  LHSMQRG+V 
Sbjct  556  SGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINTFSQMTLHSMQRGHVM  615

Query  600  QWKARPGRRG  609
             W  R G+RG
Sbjct  616  TWPVRTGQRG  625

86) YPD4_2581 in NC_017154


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  627 bits (2368),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 337/611 (56%), Positives = 480/611 (79%), Gaps = 3/611 (0%)

Query  1    MREMAQEFAEKHPKIAGRLGMHGIEVADPYVERLIESFCFLSARTQIKLDAEFPKFTQRL  60
            +RE + EFA  HPKIA+RLGM+G ++ADPYVER+IE+F FLSARTQ+K+DAEFP+FTQRL
Sbjct  16   LRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSARTQLKIDAEFPRFTQRL  75

Query  61   LDIVYPNYNSPTPSMGVIQLKPNLKEGDLTQGYCVPRGSSFFTHIAPGETTRCEFRSGQD  120
            L++V PNY +PTPSM+V++L P+ +EGDL++G  VPR+++F + I+ GE T C+FRS+QD
Sbjct  76   LEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPIPEGENTACQFRSSQD  135

Query  121  VELWPLEIAEARLSSVPPDMPNLEKHRIAYHRLKGALRIKLKLVGDLTFSQLEGLDRLPI  180
            V LWPL I E RL++ PPDMP L++   +  ++ GALRI L+  G+L+FS+L G  RLP+
Sbjct  136  VTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFGELAFSELAGPARLPF  195

Query  181  YIDGDERIVSHIFELLHASHVATII-RAGHGETAKDTVISDQPLSFEGLSPDQSLLPLSW  239
            Y+ G+ERI SH+FELLH+S VAT+   +GH +   +  + ++P++ EGL P+Q+LLPL+W
Sbjct  196  YLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNL-QHPVAHEGLEPGQGLLPLAW  254

Query  240  NIFHGHNLVQEYFTCRQRFYFFTLTQLSQSLRDNHTGEAEIIILLDRLPQD-LVSHVAPS  298
            N+FHGHNL++E+F+C +RFYFFT T LS +L+  +   AEI+ILL+RLP D L+ +  ++
Sbjct  255  NVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLNRLPPDWLIHQTDAA  314

Query  299  RFLLACTPVINLFPKRMDKIEINRALNDFHVVPDRSRPLDYEVFAINKVFGQQAETSNEV  358
            +F L CTPVINLFP+   +IE+ +++ + H+V DR+RPLDYEVF+++ V G +AET+  +
Sbjct  315  QFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSVQEVEGLEAETTRKM  374

Query  359  VFNPLYQTRHCDNGNFGRYFSITRKARTGDSNKRKYDTRTPYASTEVFVSLVDQQEAPYG  418
            +F PLY+TR+ D+GN GRYFS+ R +R +  + R+Y+TRTPY+++EVF+SLVDQ+EAPY 
Sbjct  375  IFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSEVFLSLVDQHEAPYP  434

Query  419  DSLRYLSIEAQVTNRDLPRLISASGNFELTMSDSAPVHGARFVFQPSAPRAPFAMDESAW  478
            ++LR +++ A VTNRDLP LI+ +G  +LT+  + PV G  ++  P +P++P+A  E AW
Sbjct  435  ENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPPRPPQPPLAEREMAW  494

Query  479  RLIRQLSFNYLPLSDMSHSNGGESLRNMLRLFVNASDHESNTQIDALVGCKSEPVIRRLP  538
            RLIRQLSFNYLPL+D+ H  GG++LR++L LF+ A D   + Q+ +L+GCK+ PV RRLP
Sbjct  495  RLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRSLIGCKTTPVTRRLP  554

Query  539  GNGLLVYGRGICCTLTVDEEGFSGISPYLFGMIMENYVARHAAINVFTETELNSMQRGRV  598
            G+GLLVYGRG+ C LTVDEEGFSGISPYLFG+++E+Y+ARH +IN F++  L+SMQRG+V
Sbjct  555  GSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINTFSQMTLHSMQRGHV  614

Query  599  GHWKARPGRRG  609
              W  R G+RG
Sbjct  615  MTWPVRTGQRG  625

87) YPD8_2576 in NC_017160


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  627 bits (2368),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 337/611 (56%), Positives = 480/611 (79%), Gaps = 3/611 (0%)

Query  1    MREMAQEFAEKHPKIAGRLGMHGIEVADPYVERLIESFCFLSARTQIKLDAEFPKFTQRL  60
            +RE + EFA  HPKIA+RLGM+G ++ADPYVER+IE+F FLSARTQ+K+DAEFP+FTQRL
Sbjct  16   LRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSARTQLKIDAEFPRFTQRL  75

Query  61   LDIVYPNYNSPTPSMGVIQLKPNLKEGDLTQGYCVPRGSSFFTHIAPGETTRCEFRSGQD  120
            L++V PNY +PTPSM+V++L P+ +EGDL++G  VPR+++F + I+ GE T C+FRS+QD
Sbjct  76   LEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPIPEGENTACQFRSSQD  135

Query  121  VELWPLEIAEARLSSVPPDMPNLEKHRIAYHRLKGALRIKLKLVGDLTFSQLEGLDRLPI  180
            V LWPL I E RL++ PPDMP L++   +  ++ GALRI L+  G+L+FS+L G  RLP+
Sbjct  136  VTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFGELAFSELAGPARLPF  195

Query  181  YIDGDERIVSHIFELLHASHVATII-RAGHGETAKDTVISDQPLSFEGLSPDQSLLPLSW  239
            Y+ G+ERI SH+FELLH+S VAT+   +GH +   +  + ++P++ EGL P+Q+LLPL+W
Sbjct  196  YLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNL-QHPVAHEGLEPGQGLLPLAW  254

Query  240  NIFHGHNLVQEYFTCRQRFYFFTLTQLSQSLRDNHTGEAEIIILLDRLPQD-LVSHVAPS  298
            N+FHGHNL++E+F+C +RFYFFT T LS +L+  +   AEI+ILL+RLP D L+ +  ++
Sbjct  255  NVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLNRLPPDWLIHQTDAA  314

Query  299  RFLLACTPVINLFPKRMDKIEINRALNDFHVVPDRSRPLDYEVFAINKVFGQQAETSNEV  358
            +F L CTPVINLFP+   +IE+ +++ + H+V DR+RPLDYEVF+++ V G +AET+  +
Sbjct  315  QFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSVQEVEGLEAETTRKM  374

Query  359  VFNPLYQTRHCDNGNFGRYFSITRKARTGDSNKRKYDTRTPYASTEVFVSLVDQQEAPYG  418
            +F PLY+TR+ D+GN GRYFS+ R +R +  + R+Y+TRTPY+++EVF+SLVDQ+EAPY 
Sbjct  375  IFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSEVFLSLVDQHEAPYP  434

Query  419  DSLRYLSIEAQVTNRDLPRLISASGNFELTMSDSAPVHGARFVFQPSAPRAPFAMDESAW  478
            ++LR +++ A VTNRDLP LI+ +G  +LT+  + PV G  ++  P +P++P+A  E AW
Sbjct  435  ENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPPRPPQPPLAEREMAW  494

Query  479  RLIRQLSFNYLPLSDMSHSNGGESLRNMLRLFVNASDHESNTQIDALVGCKSEPVIRRLP  538
            RLIRQLSFNYLPL+D+ H  GG++LR++L LF+ A D   + Q+ +L+GCK+ PV RRLP
Sbjct  495  RLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRSLIGCKTTPVTRRLP  554

Query  539  GNGLLVYGRGICCTLTVDEEGFSGISPYLFGMIMENYVARHAAINVFTETELNSMQRGRV  598
            G+GLLVYGRG+ C LTVDEEGFSGISPYLFG+++E+Y+ARH +IN F++  L+SMQRG+V
Sbjct  555  GSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINTFSQMTLHSMQRGHV  614

Query  599  GHWKARPGRRG  609
              W  R G+RG
Sbjct  615  MTWPVRTGQRG  625

88) YPZ3_2595 in NC_014029


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  627 bits (2368),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 337/611 (56%), Positives = 480/611 (79%), Gaps = 3/611 (0%)

Query  1    MREMAQEFAEKHPKIAGRLGMHGIEVADPYVERLIESFCFLSARTQIKLDAEFPKFTQRL  60
            +RE + EFA  HPKIA+RLGM+G ++ADPYVER+IE+F FLSARTQ+K+DAEFP+FTQRL
Sbjct  16   LRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSARTQLKIDAEFPRFTQRL  75

Query  61   LDIVYPNYNSPTPSMGVIQLKPNLKEGDLTQGYCVPRGSSFFTHIAPGETTRCEFRSGQD  120
            L++V PNY +PTPSM+V++L P+ +EGDL++G  VPR+++F + I+ GE T C+FRS+QD
Sbjct  76   LEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPIPEGENTACQFRSSQD  135

Query  121  VELWPLEIAEARLSSVPPDMPNLEKHRIAYHRLKGALRIKLKLVGDLTFSQLEGLDRLPI  180
            V LWPL I E RL++ PPDMP L++   +  ++ GALRI L+  G+L+FS+L G  RLP+
Sbjct  136  VTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFGELAFSELAGPARLPF  195

Query  181  YIDGDERIVSHIFELLHASHVATII-RAGHGETAKDTVISDQPLSFEGLSPDQSLLPLSW  239
            Y+ G+ERI SH+FELLH+S VAT+   +GH +   +  + ++P++ EGL P+Q+LLPL+W
Sbjct  196  YLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNL-QHPVAHEGLEPGQGLLPLAW  254

Query  240  NIFHGHNLVQEYFTCRQRFYFFTLTQLSQSLRDNHTGEAEIIILLDRLPQD-LVSHVAPS  298
            N+FHGHNL++E+F+C +RFYFFT T LS +L+  +   AEI+ILL+RLP D L+ +  ++
Sbjct  255  NVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLNRLPPDWLIHQTDAA  314

Query  299  RFLLACTPVINLFPKRMDKIEINRALNDFHVVPDRSRPLDYEVFAINKVFGQQAETSNEV  358
            +F L CTPVINLFP+   +IE+ +++ + H+V DR+RPLDYEVF+++ V G +AET+  +
Sbjct  315  QFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSVQEVEGLEAETTRKM  374

Query  359  VFNPLYQTRHCDNGNFGRYFSITRKARTGDSNKRKYDTRTPYASTEVFVSLVDQQEAPYG  418
            +F PLY+TR+ D+GN GRYFS+ R +R +  + R+Y+TRTPY+++EVF+SLVDQ+EAPY 
Sbjct  375  IFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSEVFLSLVDQHEAPYP  434

Query  419  DSLRYLSIEAQVTNRDLPRLISASGNFELTMSDSAPVHGARFVFQPSAPRAPFAMDESAW  478
            ++LR +++ A VTNRDLP LI+ +G  +LT+  + PV G  ++  P +P++P+A  E AW
Sbjct  435  ENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPPRPPQPPLAEREMAW  494

Query  479  RLIRQLSFNYLPLSDMSHSNGGESLRNMLRLFVNASDHESNTQIDALVGCKSEPVIRRLP  538
            RLIRQLSFNYLPL+D+ H  GG++LR++L LF+ A D   + Q+ +L+GCK+ PV RRLP
Sbjct  495  RLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRSLIGCKTTPVTRRLP  554

Query  539  GNGLLVYGRGICCTLTVDEEGFSGISPYLFGMIMENYVARHAAINVFTETELNSMQRGRV  598
            G+GLLVYGRG+ C LTVDEEGFSGISPYLFG+++E+Y+ARH +IN F++  L+SMQRG+V
Sbjct  555  GSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINTFSQMTLHSMQRGHV  614

Query  599  GHWKARPGRRG  609
              W  R G+RG
Sbjct  615  MTWPVRTGQRG  625

89) YPTS_2769 in NC_010634


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  626 bits (2367),  Expect = 1e-180, Method: Compositional matrix adjust.
 Identities = 337/611 (56%), Positives = 480/611 (79%), Gaps = 3/611 (0%)

Query  1    MREMAQEFAEKHPKIAGRLGMHGIEVADPYVERLIESFCFLSARTQIKLDAEFPKFTQRL  60
            +RE + EFA  HPKIA+RLGM+G ++ADPYVER+IE+F FLSARTQ+K+DAEFP+FTQRL
Sbjct  16   LRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSARTQLKIDAEFPRFTQRL  75

Query  61   LDIVYPNYNSPTPSMGVIQLKPNLKEGDLTQGYCVPRGSSFFTHIAPGETTRCEFRSGQD  120
            L++V PNY +PTPSM+V++L P+ +EGDL++G  VPR+++F + I+ GE T C+FRS+QD
Sbjct  76   LEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPIPEGENTACQFRSSQD  135

Query  121  VELWPLEIAEARLSSVPPDMPNLEKHRIAYHRLKGALRIKLKLVGDLTFSQLEGLDRLPI  180
            V LWPL I E RL++ PPDMP L++   +  ++ GALRI L+  G+L+FS+L G  RLP+
Sbjct  136  VTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFGELAFSELAGPARLPF  195

Query  181  YIDGDERIVSHIFELLHASHVATII-RAGHGETAKDTVISDQPLSFEGLSPDQSLLPLSW  239
            Y+ G+ERI SH+FELLH+S VAT+   +GH +   +  + ++P++ EGL P+Q+LLPL+W
Sbjct  196  YLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNL-QHPVAHEGLEPGQGLLPLAW  254

Query  240  NIFHGHNLVQEYFTCRQRFYFFTLTQLSQSLRDNHTGEAEIIILLDRLPQD-LVSHVAPS  298
            N+FHGHNL++E+F+C +RFYFFT T LS +L+  +   AEI+ILL+RLP D L+ +  ++
Sbjct  255  NVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLNRLPPDWLIHQTDAA  314

Query  299  RFLLACTPVINLFPKRMDKIEINRALNDFHVVPDRSRPLDYEVFAINKVFGQQAETSNEV  358
            +F L CTPVINLFP+   +IE+ +++ + H+V DR+RPLDYEVF+++ V G +AET+  +
Sbjct  315  QFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSVQEVEGLEAETTRKM  374

Query  359  VFNPLYQTRHCDNGNFGRYFSITRKARTGDSNKRKYDTRTPYASTEVFVSLVDQQEAPYG  418
            +F PLY+TR+ D+GN GRYFS+ R +R +  + R+Y+TRTPY+++EVF+SLVDQ+EAPY 
Sbjct  375  IFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSEVFLSLVDQHEAPYP  434

Query  419  DSLRYLSIEAQVTNRDLPRLISASGNFELTMSDSAPVHGARFVFQPSAPRAPFAMDESAW  478
            ++LR +++ A VTNRDLP LI+ +G  +LT+  + PV G  ++  P +P++P+A  E AW
Sbjct  435  ENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPPRPPQPPLAEREMAW  494

Query  479  RLIRQLSFNYLPLSDMSHSNGGESLRNMLRLFVNASDHESNTQIDALVGCKSEPVIRRLP  538
            RLIRQLSFNYLPL+D+ H  GG++LR++L LF+ A D   + Q+ +L+GCK+ PV RRLP
Sbjct  495  RLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRSLIGCKTTPVTRRLP  554

Query  539  GNGLLVYGRGICCTLTVDEEGFSGISPYLFGIIMENYVARHAAINVFTETELNSMQRGRV  598
            G+GLLVYGRG+ C LTVDEEGFSGISPYLFG+++E+Y+ARH +IN F++  L+SMQRG+V
Sbjct  555  GSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINTFSQMTLHSMQRGHV  614

Query  599  GHWKARPGRRG  609
              W  R G+RG
Sbjct  615  MTWPVRTGQRG  625

90) cts1C in NC_013716


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  617 bits (2330),  Expect = 1e-177, Method: Compositional matrix adjust.
 Identities = 346/627 (56%), Positives = 482/627 (77%), Gaps = 1/627 (0%)

Query  1    MEHNFLDYYNQELTFVREMAREFAEQHPKIAGRLGMQGIETADPYVERLIEAFCFLSART  60
            M+  +L+YYN+EL+++RE + EFA  HPKIA+RLGMQG + ADPYVER+IEAF FLSART
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QIKLDAEFPKFTQRLLDIIYPNYNAPTPSMGVVQLQPNLKEGDLTHGYVIPKKSTFYSRL  120
            Q+K+DAEFP+FTQRLL+++ PNY +PTPSM+VV+L P+ +EGDL+ G  +P+ ++F S +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  LPGEMTRCEFRNNQDVRLWPLDIAEVRLTSVPPDIPDLELHRLNHQQLKGALRIKLRLQG  180
              GE T C+FR++QDV LWPL I EVRLT+ PPD+P L+     + ++ GALRI LR  G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  DLVFSDLNGLDELPIYIQGDERVVSHTFELLHGRHVAVVVRSGEGENIHHHVIVNDALKF  240
            +L FS+L G   LP+Y+ G+ER+ SH FELLH   VA +       + + +V +++++  
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  241  EGLAPDQSLLPLQWNMFHGHTLIQEYIACRERFYFFSIaqlaaaleenntnaveIIILLN  300
            EGL P+Q+LLPL WN+FHGH L++E++AC ERFYFF+ + L+A+L+  + N  EI+ILLN
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  301  KLPQD-LVPHLDASRFLLHCTAVINLFPKRVDRIEVNRALNNFHIVPDRSRPMDYEVFSV  359
            +LP D L+ + DA++F L CT+VINLFP+   RIEV +++ + H+V DR+RP+DYEVFSV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  360  DKVFGLQAETSEELTFNPLYQTRHSDTGNFGRYFSIRREVRVKEASHRKYDTRTPYSGTE  419
            + V GL+AET+  + F PLY+TR++D GN GRYFS+RRE R    S R+Y+TRTPY+G+E
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  420  IFISLVDQQEAPYSEHIRYLLVDAMVTNRDLPRLLTSTGNLELTMSDSVPIHGARFVSSP  479
            +F+SLVDQ+EAPY+E++R + V AMVTNRDLP L+   G  +LT+  ++P+ G  ++ +P
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  480  SAPRSPFAVGEAAWRLIRQLSFNYLPLSGMEHARGGESLRNMLRLFTSSADTETLTQINS  539
             +P++P+A  E AWRLIRQLSFNYLPL++++H  GG++LR++L LF ++ D+    Q+ S
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  540  LVGCKTEPVVRRLSEEGLLVYGRGVRCSLTVDEEGFSGISPYLFGLVMENYLARHAAINI  599
            L+GCKT PV RRL+  GLLVYGRGV C LTVDEEGFSGISPYLFGLV+E+Y+ARH +IN 
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  600  FTETELHSMQRGLIARWNARPGRRGAL  626
            F++  LHSMQRG +  W  R G+RG++
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

91) Bxe_B1280 in NC_007952


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  574 bits (2169),  Expect = 5e-165, Method: Compositional matrix adjust.
 Identities = 358/628 (58%), Positives = 479/628 (77%), Gaps = 4/628 (0%)

Query  1    MDPRLLEYYTSELVYMRELAGEFAQAHPKIARRLGMQAGEIGDPYVERLIESFCFLSARM  60
            MDPRLLEYY  EL Y+RE ++EFA  HPKIA RLGMQ+ +I+DPYVER+IE+F FLSAR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLRLDAEFPRLTERLLEIIYPNYAAPTPSIAVARLFPCATEGNLAEGAHIARGAAFMSGT  120
            QL++DAEFPR+T+RLLE++ PNY +PTPS+AV +L+P + EG+LA G  ++R++AF+S  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  LVNESTRCQFRSSQDVTLYPLEISSAKLTGIPPDIPALDRYVRYGAEVRGALRLRLRTTN  180
               E+T CQFRSSQDVTL PL I   +LT+ PPD+PAL+RY+    +V GALR+ LRT  
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  GVAIESLRGLHRLPVYLAGDERTASHLFELLHAAGIASIIGEPGRFGTPGAPFHAVSEEA  240
             +A+  L G  RLP YL G+ER ASHLFELLH++++A++ GEPG+F+   + ++   +++
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFD---GELNVNLQHP  237

Query  241  VVHeglepgqgllplVSQKLHGHNLLHEFAACPSRFYFFTLTGLAAGLRQVCSREAEIVV  300
            V HEGLEPGQGLLPL  + +HGHNLLHEF ACP RFYFFT TGL+AGL++V +  AEIV+
Sbjct  238  VAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVI  297

Query  301  LLDR-PPGALADRVDASQFALFCTPVINLFKSRSDPAEAYGTGAEFQLVPDPLAPRDYEV  359
            LL+R PP+ L ++ DA+QF+LFCTPVINLF   +   E   + +E +LV D   P DYEV
Sbjct  298  LLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEV  357

Query  360  FSVQGLYGQVSKNSESLEFRPLYQTLTNDEGNHGRFFTLRRERKLASDSLRRYGTRTPYI  419
            FSVQ + G  +  +  + FRPLY+T  NDEGNHGR+F+LRRE + +S+S RRYGTRTPY 
Sbjct  358  FSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYT  417

Query  420  GTEAFVSLVDQDERPYEQHMRYLSIDAWLTNRDLPNLIPCNGVSDLTLLQSSPVQQVGLI  479
            G+E F+SLVDQ+E PY +++R +++ A +TNRDLP LIP NG  DLT+  + PV  VGLI
Sbjct  418  GSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLI  477

Query  480  RTPSVPRAPYAEREAAWRLIRQLNFNYLTLQARAGEASGASLRDLLQLFVAADNTAYRQQ  539
            R P  P++P AERE AWRLIRQL+FNYL L      ++G +LRDLL+LF++A++++  +Q
Sbjct  478  RPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQ  537

Query  540  IGSLVKVGSRTVTRKLPRSGDLALGRGIACTLTVDESGLGGVSTYLLGLILEHYLARHVS  599
            + SL+   +  VTR+LP SG L  GRG++C LTVDE G++G+S YL+GL+LEHY+ARHVS
Sbjct  538  VRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVS  597

Query  600  AHSFTQTELHSVQRGRVVVWPVRMGTRG  627
             ++F+Q  LHS+QRG+V+ WPVR G RG
Sbjct  598  INTFSQMTLHSMQRGHVMTWPVRTGQRG  625

92) BMULJ_05347 in NC_010805


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  534 bits (2016),  Expect = 6e-153, Method: Compositional matrix adjust.
 Identities = 323/630 (52%), Positives = 461/630 (74%), Gaps = 8/630 (1%)

Query  15   MNPHLLDAYNRELLYFKELVEEFAQAHPKIARRLGLHAGEIADPFVERLVQAASFTTARL  74
            M+P+LL+ YNREL Y++E   EFA  HPKIA RLG+++ +IADP+VER+++A SF +AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  75   QLKLDAAFPLLSSRLLETVYPNYVAPTPSIAVARLYPDEQEGNLLEGFRVPRGTTFTSRV  134
            QLK+DA FP ++ RLLE V PNYV+PTPS+AV +LYPD QEG+L  G  VPR+T+F S +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  135  PDGERTPCTFRSGLDVTLYPLEIVSARLTGVPPDIPSVERYGAADRPIrgalrlrlrttg  194
            P+GE T+C FRS+ DVTL PL I   RLT+ PPD+P+++RY +++  + GALR+ LRT G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  195  earFDELRGLDRLPVYLAGDERVASRLFELIHAGAVASVIGMPNRFADSNRSFGVVRDRA  254
            E  F EL G  RLP YL G+ER+AS+LFEL+H++AVA++ G P +F +    + V  +++
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDG---ELNVNLQHP  237

Query  255  VEHTGLAADEGLLPLVGTKFHGQNLLHEYATCPARFWFFTLTGLNAGLRYVTDREAEIVV  314
            V H GL +++GLLPL    FHG+NLLHE+ +CP RF FFT TGL+AGL+ V +  AEIV+
Sbjct  238  VAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVI  297

Query  315  LLDRFDGS-LVEHVDASRFALFCTPVINLFRRTSDPAEMPGTGAEVLVQPDRQNGSDYEV  373
            LL+R+    L+++ DA++F+LFCTPVINLF RT+   E+  + +E  +  DR    DYEV
Sbjct  298  LLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEV  357

Query  374  FAVEALHGFVSKGAASLEFRPLYRPLLNNEADHGRYFTIRREHGTAKTSYRRYGARTPYV  433
            F+V+ ++G+ +  +  + FRPLY+   N+E++HGRYF++RRE   +  S RRYG+RTPY 
Sbjct  358  FSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYT  417

Query  434  STDVFVSLVDENERSYPQAMKYLSVDAWLTNGDLPSLLEPEGATDLTVEISAPVRRTELV  493
            +++VF+SLVD++E +YP+ ++ ++V A +TN DLP L+  +G  DLTV+ + PV    L+
Sbjct  418  GSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLI  477

Query  494  RAPSAARAPLAQGDAAWRLIGQLNLDYGRLETQD----GSALRDILILFAAADDVRLRRQ  549
            R+P ++++PLA+ + AWRLI QL+++Y  L   D    G ALRD+L LF +A+D    RQ
Sbjct  478  RPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQ  537

Query  550  IDSLIRVETRPVTKKLPGQGPLRFGRGIECVLTVDEAGFDGASPFLFGVILEHYVARHVS  609
            + SLI   T PVT++LPG G L +GRG+ C LTVDE GF G SP+LFG++LEHY+ARHVS
Sbjct  538  VRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVS  597

Query  610  THSFTQSVLRSPQRGELMRWPVRMGTRSAA  639
             ++F+Q  L+S QRG++M WPVR G R++ 
Sbjct  598  INTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

93) Bcep18194_B1828 in NC_007511


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  534 bits (2014),  Expect = 8e-153, Method: Compositional matrix adjust.
 Identities = 326/630 (52%), Positives = 456/630 (73%), Gaps = 8/630 (1%)

Query  15   MNPHLLDAYNRELLYFNELMEEFVHAHPKIARRLGMHAGEIADPFVERLVQAASFTTARL  74
            M+P+LL+ YNREL Y+ E   EF   HPKIA RLGM++ +IADP+VER+++A SF +AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  75   QLKLDAEFPLLTSRLLETIYPNYVAPTPSIAVARLYPNEQEGNLLEGFCVPRDTEFASRV  134
            QLK+DAEFP +T RLLE + PNYV+PTPS+AV +LYP+ QEG+L  G  VPRDT F S +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  135  PDGERTSCTFRSGLDVMLYPLEIVSARLIGVPPDIPSIERYSVAHKPVrgalrlrlrttg  194
            P+GE T+C FRS+ DV L PL I   RL + PPD+P+++RY  ++  V GALR+ LRT G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  195  earFEELRGLDRLPVYLAGDEGVASRLFELIHAGAVATVTGVPDRFADPNQARGIVSAQA  254
            E  F EL G  RLP YL G+E +AS+LFEL+H++AVAT++G P++F +      +   ++
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDG---ELNVNLQHP  237

Query  255  VEYTGLATDESLLPLAGAKFHGHNLLHEYAACPARFWFFALAGLNAGLRHVTGREAEIVI  314
            V   GL  +++LLPLA   FHGHNLLHE+ ACP RF FF+ +GL+AGL+ V G  AEIVI
Sbjct  238  VAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVI  297

Query  315  LLDRFDSA-LAEHVDASRFALFCTPVINLFRRKTDPAEIPCTGGEILLQPDRQNGSDYEV  373
            LL+R+ +  L ++ DA++F+LFCTPVINLF R T   E+  +  E  L  DR    DYEV
Sbjct  298  LLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEV  357

Query  374  FAVEALHGFVSKGAASLEFRPLYRALTNDENNHGRYFTTRREHGRAKASYRRYGARTTYV  433
            F+V+ ++G+ +  +  + FRPLY++  NDE NHGRYF+ RRE  R+  S RRYG+RT Y 
Sbjct  358  FSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYT  417

Query  434  GTDFFVSLVDQNEQSYPQIMKYLAVDAWLTNCDLPSLLAPNGVTDLTIGISAPLSSAGLI  493
            G++ F+SLVDQ+E +YP+ ++ ++V A +TN DLP L++ NG  DLT++ + P+++ GLI
Sbjct  418  GSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLI  477

Query  494  RAPSPARAPLAQRDIAWRLIGQLNLGYGTLEA----GDGSGLRDILALFAADDDVRYRRQ  549
            R+P P+++PLA+R++AWRLI QL++ Y  L       +G +LRD+L LF + +D    RQ
Sbjct  478  RPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQ  537

Query  550  IDSLIRVDAHPVTKKLPGQNQLRFGRGIECVLTVDETGFDGMSPYLFGVILEHYLARHVS  609
            + SLI   + PVT++LPG   L +GRG+ C LTVDE GF G+SPYLFG++LEHY+ARHVS
Sbjct  538  VRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVS  597

Query  610  THSFTQSVLRSTQRGELMRWPIRTGTRSAL  639
             ++F+Q  L+S QRG++M WP+RTG R+++
Sbjct  598  INTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

94) Bmul_3177 in NC_010086


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  533 bits (2013),  Expect = 1e-152, Method: Compositional matrix adjust.
 Identities = 323/630 (52%), Positives = 461/630 (74%), Gaps = 8/630 (1%)

Query  30   MNPHLLDAYNRELLYFKELVEEFAQAHPKIARRLGLHAGEIADPFVERLVQAASFTTARL  89
            M+P+LL+ YNREL Y++E   EFA  HPKIA RLG+++ +IADP+VER+++A SF +AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  90   QLKLDAAFPLLSSRLLETVYPNYVAPTPSIAVARLYPDEQEGNLLEGFRVPRGTTFTSRV  149
            QLK+DA FP ++ RLLE V PNYV+PTPS+AV +LYPD QEG+L  G  VPR+T+F S +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  150  PDGERTPCTFRSGLDVTLYPLEIVSARLTGVPPDIPSVERYGAADRPIrgalrlrlrttg  209
            P+GE T+C FRS+ DVTL PL I   RLT+ PPD+P+++RY +++  + GALR+ LRT G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  210  earFDELRGLDRLPVYLAGDERVASRLFELIHAGAVASVIGMPNRFADSNRSFGVVRDRA  269
            E  F EL G  RLP YL G+ER+AS+LFEL+H++AVA++ G P +F +    + V  +++
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDG---ELNVNLQHP  237

Query  270  VEHTGLAADEGLLPLVGTKFHGQNLLHEYATCPARFWFFTLTGLNAGLRYVTDREAEIVV  329
            V H GL +++GLLPL    FHG+NLLHE+ +CP RF FFT TGL+AGL+ V +  AEIV+
Sbjct  238  VAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVI  297

Query  330  LLDRFDGS-LVEHVDASRFALFCTPVINLFRRTSDPAEMPGTGAEVLVQPDRQNGSDYEV  388
            LL+R+    L+++ DA++F+LFCTPVINLF RT+   E+  + +E  +  DR    DYEV
Sbjct  298  LLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEV  357

Query  389  FAVEALHGFVSKGAASLEFRPLYRPLLNNEADHGRYFTIRREHGTAKTSYRRYGARTPYV  448
            F+V+ ++G+ +  +  + FRPLY+   N+E++HGRYF++RRE   +  S RRYG+RTPY 
Sbjct  358  FSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYT  417

Query  449  STDVFVSLVDENERSYPQAMKYLSVDAWLTNGDLPSLLEPEGATDLTVEISAPVRRTELV  508
            +++VF+SLVD++E +YP+ ++ ++V A +TN DLP L+  +G  DLTV+ + PV    L+
Sbjct  418  GSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLI  477

Query  509  RAPSAARAPLAQGDAAWRLIGQLNLDYGRLETQD----GSALRDILILFAAADDVRLRRQ  564
            R+P ++++PLA+ + AWRLI QL+++Y  L   D    G ALRD+L LF +A+D    RQ
Sbjct  478  RPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQ  537

Query  565  IDSLIRVETRPVTKKLPGQGPLRFGRGIECVLTVDEAGFDGASPFLFGVILEHYVARHVS  624
            + SLI   T PVT++LPG G L +GRG+ C LTVDE GF G SP+LFG++LEHY+ARHVS
Sbjct  538  VRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVS  597

Query  625  THSFTQSVLRSPQRGELMRWPVRMGTRSAA  654
             ++F+Q  L+S QRG++M WPVR G R++ 
Sbjct  598  INTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

95) Bphyt_0448 in NC_010681


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  523 bits (1972),  Expect = 2e-149, Method: Compositional matrix adjust.
 Identities = 315/629 (51%), Positives = 448/629 (72%), Gaps = 3/629 (0%)

Query  1    MDPRLLDYYSRELLYIRELAMEFAAAHPKIARRLGMHAGEIGDPYVERLLQSSAFVTARA  60
            MDPRLL+YY+REL Y+RE + EFA+ HPKIA RLGM++ +I+DPYVER++++ +F++AR+
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QIRLDDAFPEFTLPLLQTVYPNYTCPTPSIAVARFFPLAQGKHAVNGTVVPRGTAFPSRI  120
            Q+++D  FP FT  LL+ V PNY  PTPS+AV +++P +Q  +  +G  VPR+TAF S I
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PDGELTACEFRSSQDVTLFPLEIVQARLTGIPPDIPMLDRYVPAGRTAHGALRLRLRTTN  180
            P+GE TAC+FRSSQDVTL PL I + RLT+ PPD+P L+RY+P+     GALR+ LRT  
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  GASIANLAGLDRLPVYLSGDETTASHLFELIHAAGVVTVIGVPGEFATGTLHAVTRDAVV  240
              ++++LAG  RLP YL G+E  ASHLFEL+H+++V T+ G PG+F  G L+   +++V 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFD-GELNVNLQHPVA  239

Query  241  HEALEPEQSLLPAVPRKFHGHNLLQEYFACPARFWFFTLTGLAKGLASIAGNEAEIVLLL  300
            HE+LEP Q+LLP     FHGHNLL+E+FACP RF FFT TGL+ GL  + GN AEIV+LL
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  301  ER-PVDRLAETVDASHFALFCTPVINLFprrtdrldldpdrQSHRLVPVPAASSDYAVHS  359
            +R P D+L +  DA++F+LFCTPVINLFPR T R+++      ++LV   + + DY V S
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  360  VQAAWGQVSEDSEALRFYPLHASVGESTSRGARYFTIRREPNRAEEDGRHYGTRRPFTET  419
            VQ   G  +E +  + F PL  +  +  +  +RYF++RREP R+ E +R+YGTR P+T +
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGS  419

Query  420  RTFISLVDRDEQPNTERIHYLSLEALLTNRDLPCLIPCDGRRDLFPHKSIPAESVGLVRA  479
              F+SLVD++E P  E ++ +++ A++TNRDLPCLIP +GR DL  + +IP  +VGL+R+
Sbjct  420  EVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRP  479

Query  480  PTMPRPPLASGERAWQLYGQLNLGYMTFDEPPDRPATGDALRRLLRLYLSEDAAVLRRQV  539
            P  P+PPLA  E AW+L  QL++ Y+ + +  +R + G+ALR LL L+++ + +   RQV
Sbjct  480  PRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHR-TGGQALRDLLNLFIPAHDSPQSRQV  538

Query  540  EALRSATATPVNRRLPPHFPQPFGRGIECTLTFDESGFDGMSPYTLGLVLERYVARHVSE  599
             +L +  +TPV RRLP      +GRG+ C LT DE GF G+SPY +GLVLE+Y+ARHVS 
Sbjct  539  RSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSI  598

Query  600  RSFTTTVLCSTQRGRLTHWPPRAGTRGAA  628
             +F+   L S QRG++  WP R+G RG+ 
Sbjct  599  NTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

96) VAPA_1c02330 in NC_022247


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  492 bits (1854),  Expect = 3e-140, Method: Compositional matrix adjust.
 Identities = 295/628 (47%), Positives = 446/628 (72%), Gaps = 6/628 (0%)

Query  1    MDARLLDYYNRELTYMHELGAEFAQRYPKIAGRLGMRGIEVSDPYVERLLEGFSFLTARI  60
            MD+RLL+YYNREL+Y++E GAEFA   PKIA+RLGM+G +++DPYVER++E+FSFL+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFSQRLLEVVYPNFLAPLPAMAVVQIDGNLNEGSLKAGYELPRHTIMRGRM  120
            QLK+DAEFPRF+QRLLEVV PN+++P P+MAVV++  + +EG L  G  +PR+T   + +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  IKGEQTACEFRTGHEVTLWPIRIADAGIGPVPAEIA--HAMPAVAQRAKSAITIKLEAVG  178
              GE+TAC+FR++++VTLWP+ I +  + + P++++  H   +   +  +A+ I L + G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  GTTFAELP-IDRLEFFLSGAELHALRVLELAVHHSIGTVCRSGPGSKARIVPLG-DEAIR  236
              +F+EL+   RL F+L G E  A +++EL    +++T+  + PG     + +  ++++ 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATL-AGEPGHFDGELNVNLQHPVA  239

Query  237  HEGFDPEQALLPYDARSFQGYRLLHEYFAFPDRYLFFSVKNLRAAASAMGGTTMEIVILL  296
            HEG++P Q+LLP     F+G  LLHE+FA P+R+ FF+   L A+   + G   EIVILL
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  297  DRADGD-LERLVDAKHFSLFCTPIINLVPRRSDRIPVGPGQHEHHAVIDRTRPRDFEIFT  355
            +R   D L +  DA +FSLFCTP+INL PR + RI V  +  E+H V+DRTRP D+E+F+
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  356  VERVTGHMASGSEEREFRPFLGSFAADDGDFGAYFSLRREPRLVSDRARAQGTRTSYTGS  415
            V+ V G  A  +    FRP+  +   D+G+ G YFSLRREPR  S+ AR  GTRT+YTGS
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGS  419

Query  416  EVYVSLVDQHDAPFPHSLRHITIDALCTNRDLPLLLPTGLESDFSLRVSAPVRGIRILRG  475
            EV++SLVDQH+AP+P++LRHIT+ A+ TNRDLP L+P     D+++  + PV G+ ++R 
Sbjct  420  EVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRP  479

Query  476  PSRPYPALAEGALTWRLISHLGLNYLSLTDIDATQGAAALREMLDLYGNLADPAVRRQIQ  535
            P  P P+LAE  ++WRLI +L++NYL+L+D+D   G+ ALR++L+L+    D++  RQ++
Sbjct  480  PRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVR  539

Query  536  GVRSMALAPVFRRLPEPGPIVFGRGVEIALKIDEVAFSGASPYLFGAVLEQFFSRHVSLN  595
            ++ +   +PV RRLP +G +V+GRGV   L +DE +FSG SPYLFG VLE++++RHVS+N
Sbjct  540  SLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSIN  599

Query  596  AFTEFALSSLQRGEIARWTPRIGRRPAV  623
            +F++ +L S+QRG++  W  R G+R +V
Sbjct  600  TFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

97) Bphyt_2789 in NC_010681


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  491 bits (1853),  Expect = 5e-140, Method: Compositional matrix adjust.
 Identities = 301/635 (48%), Positives = 454/635 (72%), Gaps = 15/635 (2%)

Query  10   DPELLDYYTGELLYMRELAQEFAEQHPKVAKRLGMHAGETADPYVERLLQASSFVTARMR  69
            DP LL+YY  EL Y+RE + EFA  HPK+A RLGM++ + ADPYVER+++A SF++AR +
Sbjct  2    DPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSARTQ  61

Query  70   MRLDTAFPELMQPLLETVYPNYVRQTPSISVARLYPGHESGHLGQGFLIPRGTAFTSRPP  129
            +++D+ FP + Q LLE V PNYV  TPS++V +LYP+ + G+L++G  +PR+TAF S  P
Sbjct  62   LKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPIP  121

Query  130  EGEKTPCVFRSSQDVTVYPLRINLARVTLVPSDIPSLDFYVPDGQPVHGALRLTLETTNG  189
            EGE+T+C FRSSQDVT+ PL I+  R+T  P+D+P+L+ Y+P    V GALR+TL T   
Sbjct  122  EGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFGE  181

Query  190  TSIASLGELARLPVYLTGDERTASHLFELLHTSSVATVMAAPGRFTEGRLYGVTRGAVVH  249
             +++ L+  ARLP YL G+ER ASHLFELLHTS+VAT+ + PG+F +G L    + +V H
Sbjct  182  LAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHF-DGELNVNLQHPVAH  240

Query  250  EGLDPQQAVLPDVPRSLHGHGLVQEYFACPARFWFFALTGLAQGLRAVEGNAIEIVILLN  309
            EGL+P Q++LP     +HGH L++E+FACP RF FF+ TGL+ GL+ V+GN  EIVILLN
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  310  RAPGA-LLDAVDASHVALFCTPVINLFPWRTKHLEIDPEDSAPQRLVPVPDAPADFDLRS  368
            R P   L++  DA++ +LFCTPVINLFP+ T ++E+  +  + Q+LV     P D+++ S
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEV-THSVTEQHLVVDRTRPLDYEVFS  359

Query  369  VDVAHGQVSEDDSDDVRFKPWDGSFEERDASAGHYFSLRRELCRNTGSERQYGTRRPFTE  428
            V+  +G +  + +  + F+P   + ++ +++ G+YFSLRRE  R++ S R+YGTR P+T 
Sbjct  360  VQEVEG-LEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTG  418

Query  429  TQTFISLVNGEGRSNESRIRSLSLDAWLTNRDLPSLLDCNGRDDLTLDGSKPVASVGLVR  488
            ++ F+SLV+ +  +    +R +++ A +TNRDLP L+  NGRDDLT+D++ PVA+VGL+R
Sbjct  419  SEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIR  478

Query  489  APSAPKSPLARHDLAWQLMSQLNLNY---GMFDDRCGDHDIEPHSGDGVRRRLRLYVTPD  545
            +P +P++PLA +++AW+L+ QL++NY   + +D+R G        G+++R  L L++ ++
Sbjct  479  PPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTG--------GQALRDLLNLFIPAH  530

Query  546  AGVLARQVECLLSATATPVNRKLPGDGPFVFGRCIECCFTFDESGFDGVSPYTLALVLEH  605
             +  +RQV  L++  +TPV R+LPG G +V+GR + C +T DE GF G+SPY ++LVLEH
Sbjct  531  DSPQSRQVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEH  590

Query  606  YVARHVSTHSFTTTVLYSKQRGRIASWPPRRGTRG  640
            Y+ARHVS ++F+   L S QRG++ +WP R G RG
Sbjct  591  YIARHVSINTFSQMTLHSMQRGHVMTWPVRTGQRG  625

98) Bphy_0022 in NC_010622


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  491 bits (1851),  Expect = 7e-140, Method: Compositional matrix adjust.
 Identities = 289/626 (47%), Positives = 442/626 (71%), Gaps = 4/626 (0%)

Query  10   DPELLEYYTRELMYTIALAQEFAAQHPKIAARLGMQAGEIGDPYVERLVQGASFMNARTQ  69
            DP LLEYY REL Y    + EFA+ HPKIAARLGMQ+ +I+DPYVER++++ SF++ARTQ
Sbjct  2    DPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSARTQ  61

Query  70   MRIDAAFPELMQPMLETVYPNYIRQTPSIGVARLYPGHESGHLGQGFHIPRGTAFTSHTP  129
            ++IDA FP + Q +LE V PNY+  TPS++V +LYP+ + G+L++G  +PR+TAF S  P
Sbjct  62   LKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPIP  121

Query  130  AGENTSCVFRSSQDVTVYPLRIKVARVTLIPPDIPSLGHYVADGQQVRGAVRLTLETTNG  189
             GENT+C FRSSQDVT+ PL I   R+T  PPD+P+L +Y++   +V GA+R+TL T   
Sbjct  122  EGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFGE  181

Query  190  ASIATLEELDRLPLYLAGDERIASHLFELIHAAGIATVMAAPGRFADGPLYGVTRGAVVH  249
             +++ L    RLP+YL G+ERIASHLFEL+H++++AT+ + PG+F DG L    + +V H
Sbjct  182  LAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHF-DGELNVNLQHPVAH  240

Query  250  EGIDLEQAVLPDVPRTLHGHGLLQEYFACPARFWFLALTGLAQGLKAIEGNAVEIVILLN  309
            EG++  Q++LP     +HGH LL+E+FACP RF F++ TGL+ GL+ ++GN  EIVILLN
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  310  R-APGVLADTVDASHFALFCTPVVNLFPMRTKNLPIDREQSEHRLVPVPDAPADFDLRSV  368
            R +P+ L +  DA++F+LFCTPV+NLFP  T  + + +  +E++LV     P D+++ SV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  369  DAARGQVSEEDSEEVRFEPRDRPLGGGGSGEGHYFALRRQLNLVQGGGRQYGTRRPFTET  428
            +   G +  E +  + F P  +    + + +G+YF+LRR+      ++R+YGTR P+T +
Sbjct  361  QEVEG-LEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGS  419

Query  429  QTFISLVNSQGRPDDSGIRFLSLDAWLTNRDLPSLLECNGLNDLTLAGSKPVVSVGFVRA  488
            + F+SLV+ +  P    +R +++ A +TNRDLP L+  NG +DLT+ ++ PV +VG++R+
Sbjct  420  EVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRP  479

Query  489  PSAPKPPLARGDLAWQLMGQLKLDYQMFDDRYSEPQPGEGVRRRLRLYVMPDAGALGRQV  548
            P +P+PPLA  ++AW+L+ QL ++Y  + D   +   G+++R  L L++ ++ ++ +RQV
Sbjct  480  PRPPQPPLAEREMAWRLIRQLSFNYLPLAD-LDHRTGGQALRDLLNLFIPAHDSPQSRQV  538

Query  549  ESLVSATATPVNEMLAGNGPIVFGRGIECEFTFDESGFDGVSPYTLALVLEHYVARHVSM  608
             SL++  +TPV   L+G+G +V+GRG+ CE+T DE GF G+SPY ++LVLEHY+ARHVS+
Sbjct  539  RSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSI  598

Query  609  HSFTTTVLHSKQRGLIAQWPPRMGTR  634
            ++F+   LHS QRG +  WP R G R
Sbjct  599  NTFSQMTLHSMQRGHVMTWPVRTGQR  624

99) Bphy_7023 in NC_010625


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  490 bits (1847),  Expect = 1e-139, Method: Compositional matrix adjust.
 Identities = 291/635 (46%), Positives = 450/635 (71%), Gaps = 10/635 (1%)

Query  1    MDPRTLEFYTRELRFQRAMASEFAADHLKIARRLGMEAGDIGDPYVERLVQGSAFVNARI  60
            MDPR LE+Y REL + R  ++EFA+ H KIA RLGM++ DI+DPYVER++++ +F++AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QMRFDDEFPQLTQALLSCVYPNYLLPTPSIAVARFYPGGKAGDLVSGHRITRGTLATSKL  120
            Q+++D EFP++TQ LL  V PNY+ PTPS+AV ++YP+ + GDL  G  + R+T   S +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PEGEKTPCQFSLCHDVTLYPLEISFAKLGGIPPDIYGMDRFVPPHRRVHGGLRLRIRTTG  180
            PEGE+T+CQF   +DVTL PL I   +L + PPD+ +++R++PP+ +V G+LR+ +RT G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  DVPVASLQGLDRLPVCLAGDAKLASHLHELIHTAAIATVAGEPGRFSEAGYAYHTVTSNA  240
            +++ + L G  RLP  L G+ ++ASHL EL+HT+A+AT+AGEPG+F       +    ++
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDG---ELNVNLQHP  237

Query  241  VIQEGIGPEESVLPLASRKFLGHNLVHEYFACPERFYFFTLTGLAAGLRNISGHEAEIVV  300
            V +EG+ P +++LPLA   F GHNL+HE+FACPERFYFFT TGL+AGL+++ G+ AEIV+
Sbjct  238  VAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVI  297

Query  301  LLDR-PAGDLADRVDASMFALFCAPVINLFPLRTESMPIREGAPETHIVPVEKRPLDFEL  359
            LL+R P++ L ++ DA+ F+LFC+PVINLFP  T  + + ++  E H+V    RPLD+E+
Sbjct  298  LLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEV  357

Query  360  HSLERVLGQVTEESEVLEFRPLHQALMRDEDSHGRYFTVRREQHLAPGQSRRYGTHSTYV  419
             S++ V G  +E +  + FRPL ++   DE++HGRYF++RRE + ++  +RRYGT++ Y 
Sbjct  358  FSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYT  417

Query  420  STESFLQLVGPDGEPYDNGDDGEIHFVSVQAWVTNRDLPSLLRCNGVRDLDLRQSAPVSS  479
            ++E FL LV+ +  PY +    +++ ++V A VTNRDLP L+  NG  DL +  + PV++
Sbjct  418  GSEVFLSLVDQHEAPYPE----NLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAG  473

Query  480  IGLIRPPGRPKAPFAQGIKAWQLLMHLDIDHSVFDDRYDEPHPGEGLQSFLRLYLSDDAV  539
            +GLIRPP  P++P+A+   AW+L+ +L ++   + D  D+   G++L+ +L L+++ +  
Sbjct  474  VGLIRPPRPPQPPLAEREMAWRLIRQLSFNYLPLAD-LDHRTGGQALRDLLNLFIPAHDS  532

Query  540  AHRRQVESLTAATLTPVNRIIPNQQPPV-ARVLECGITVDESGFDGASPYVFGLVLEHYL  598
            ++ RQV SL +   TPV R +P     V +R + C +TVDE GF G SPY+FGLVLEHY+
Sbjct  533  PQSRQVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYI  592

Query  599  ARHVSMHSYTAIVLDSKQRGRIAQWPPRPGTRSVV  633
            ARHVS+++++ + L+S QRG++  WP R G R+ V
Sbjct  593  ARHVSINTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

100) Varpa_2904 in NC_014931


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  478 bits (1800),  Expect = 7e-136, Method: Compositional matrix adjust.
 Identities = 298/634 (48%), Positives = 454/634 (72%), Gaps = 15/634 (2%)

Query  1    MDARLLDYYNRELTYMHELGAEFAQRYPKIAGRLGMRGIEVSDPYVERLLEGFSFLTARI  60
            MD+RLL+YYNREL+Y++E GAEFA   PKIA+RLGM+G +++DPYVER++E+FSFL+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFSQRLLEVVYPNFLAPLPAMAVVQIDGNLNEGSLKAGYELPRHTVLRGRM  120
            QLK+DAEFPRF+QRLLEVV PN+++P P+MAVV++  + +EG L  G  +PR+T + + +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  IKGEQTACEFRTGHPVTLWPIRITEAGIGPVPAEIGHAMPMVAR------QAKSAITIKL  174
              GE+TAC+FR+++ VTLWP+ I E  + + P++    MP + R      +  +A+ I L
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPD----MPALHRYLPPNIHVAGALRITL  176

Query  175  EAVGGARFSEMP-LDRLEFFLSGAELHALRVLELVAHRSVGAVCRSGPGAQGGSSRIVPL  233
             + G   FSE++   RL F+L G E  A +++EL+   +V+++  +G  ++ ++   V L
Sbjct  177  RTFGELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATL--AGEPGHFDGELNVNL  234

Query  234  GDEAIRHEGFDPDQALLPYDARSFQGYRLLHEYFAFPDRYLFFSVKNLRAAVSAIGGSTM  293
             ++++ HEG++P+Q+LLP     F+G  LLHE+FA P+R+ FF+   L A++  + G+  
Sbjct  235  -QHPVAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVA  293

Query  294  EIVIlldradad-lerlvdaKHFSLFCTPIINLVPRRSDRIPVGPGQHEHHAVIDRTRPR  352
            EIVILL+R  +D L +  DA +FSLFCTP+INL PR + RI V  +  E+H V+DRTRP 
Sbjct  294  EIVILLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPL  353

Query  353  DFEIFTVERVTGHMTNGSEEREFRPFLGSFATDDGDFGAYFSLRREPRLVSDRARAQGTR  412
            D+E+F+V+ V G  ++ +    FRP+  +   D+G+ G YFSLRREPR  S+ AR  GTR
Sbjct  354  DYEVFSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTR  413

Query  413  TSYTGSEVYVSLVDQHDAPFPHSLRHITLDALCTNRDLPLLLPTGLESDFTLRISAPVRS  472
            T+YTGSEV++SLVDQH+AP+P++LRHIT+ A+ TNRDLP L+P     D+T+  + PV +
Sbjct  414  TPYTGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAG  473

Query  473  IRILRGPSRPYPALAEGALTWRLISHLGLNYLSLTDVDAAQGAAALREMLDLYGNLADPA  532
            + ++R P  P P+LAE  ++WRLI +L++NYL+L+D+D   G+ ALR++L+L+    D++
Sbjct  474  VGLIRPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSP  533

Query  533  VRRQIQGVRSMALAPVFRRLPEPGPIVFGRGVEVALKIDEVAFSGASPYLFGAVLEQFFS  592
              RQ++++ +   +PV RRLP +G +V+GRGV   L +DE +FSG SPYLFG VLE++++
Sbjct  534  QSRQVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIA  593

Query  593  RHVSLNAFTEFALSSLQRGEIARWTPRVGRRPAV  626
            RHVS+N+F++ +L S+QRG++  W  R G+R +V
Sbjct  594  RHVSINTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

101) Vapar_0198 in NC_012791


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  477 bits (1799),  Expect = 8e-136, Method: Compositional matrix adjust.
 Identities = 294/628 (47%), Positives = 447/628 (72%), Gaps = 6/628 (0%)

Query  1    MDARLLDYYNRELTYMHELGAEFAQRYPKIAGRLGMRGIEVSDPYVERLLEGFSFLTARI  60
            MD+RLL+YYNREL+Y++E GAEFA   PKIA+RLGM+G +++DPYVER++E+FSFL+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFSQRLLEVVYPNFLAPLPAMAVVQIDGNLNEGSLKAGYELPRHTIMRGRM  120
            QLK+DAEFPRF+QRLLEVV PN+++P P+MAVV++  + +EG L  G  +PR+T   + +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  IKGEQTACEFRTGHEVTLWPIRIADASIGPVPAEIA--HAMPAVAQRARSAITIKLEAVG  178
              GE+TAC+FR++++VTLWP+ I +  + + P++++  H   +   +  +A+ I L + G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  GTTFAEMP-IERLEFFLSGAELHALRVLELAVHHSIGTVCRSGPGSKARIVPLG-DEAIR  236
              +F+E++   RL F+L G E  A +++EL    +++T+  + PG     + +  ++++ 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATL-AGEPGHFDGELNVNLQHPVA  239

Query  237  HEGFDPEQALLPYDARSFQGYRLLHEYFAFPDRYLFFSVKNLRAAASAMGGTTMEIVIll  296
            HEG++P Q+LLP     F+G  LLHE+FA P+R+ FF+   L A+   + G   EIVILL
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  297  dradad-lerlvdaKHFSLFCTPIINLVPRRSDRIPVGPGQHEHHAVIDRTRPRDFEIFT  355
            +R  +D L +  DA +FSLFCTP+INL PR + RI V  +  E+H V+DRTRP D+E+F+
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  356  VERVTGHMASGSEEREFRPFLGSFAADDGDFGAYFSLRREPRLVSDRARAQGTRTSYTGS  415
            V+ V G  A  +    FRP+  +   D+G+ G YFSLRREPR  S+ AR  GTRT+YTGS
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGS  419

Query  416  EVYVSLVDQHDAPFPHSLRHITIDALCTNRDLPLLLPTGLESDFSLRVSAPVRGIRILRG  475
            EV++SLVDQH+AP+P++LRHIT+ A+ TNRDLP L+P     D+++  + PV G+ ++R 
Sbjct  420  EVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRP  479

Query  476  PSRPYPALAEGALTWRLISHLGLNYLSLTDVDATQGAAALREMLDLYGNLADPAVRRQIQ  535
            P  P P+LAE  ++WRLI +L++NYL+L+D+D   G+ ALR++L+L+    D++  RQ++
Sbjct  480  PRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVR  539

Query  536  GVRSMALAPVFRRLPEPGPIVFGRGVEIALKIDEVAFSGASPYLFGAVLEQFFSRHVSLN  595
            ++ +   +PV RRLP +G +V+GRGV   L +DE +FSG SPYLFG VLE++++RHVS+N
Sbjct  540  SLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSIN  599

Query  596  AFTEFALSSLQRGEIARWTPRIGRRPAV  623
            +F++ +L S+QRG++  W  R G+R +V
Sbjct  600  TFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

102) BN112_2635 in NC_019382


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  474 bits (1787),  Expect = 8e-135, Method: Compositional matrix adjust.
 Identities = 292/639 (46%), Positives = 447/639 (70%), Gaps = 14/639 (2%)

Query  1    MDARLLDYYNRELVYMRELGAEFARQHPKVAGRLGMHGTEVADPYVERLLEGFSFLAARI  60
            MD+RLL+YYNREL Y+RE GAEFA  HPK+A+RLGM+GT++ADPYVER++E+FSFL+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   HLKMDAEFPRFTQRLLEVVHPHYLAPTPAMAVAQFSPSMNEGTLAGGFTLPRGTVLRGGL  120
            +LK+DAEFPRFTQRLLEVV+P+Y++PTP+MAV ++ P  +EG LA G T+PR+T + + +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  ARGEQTPCEFMTGHALRLWPLRVTAAELTGAPTDlplarlglggreagVASALRLRLEVC  180
            + GE+T+C+F +++ + LWPL +    LT+AP D+P  +  L      VA+ALR+ L   
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIH-VAGALRITLRTF  179

Query  181  GGVSLEEL-DLDQLVFYLNGPDAPMQRLLELIMCHTVAVLGHDSERPVSWINRLPADAVR  239
            G +++ EL +  +L FYL G +    +L+EL+   +VA L+ ++ +  + +N    ++V 
Sbjct  180  GELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVA  239

Query  240  HEGFADDQALLPTDTRVFQGYRLLQEYFAFARRYLFFSLNGLKQGLCtrraapaaaagpa  299
            HEG+  +Q+LLP    VF+G  LL+E+FA + R+ FF+  GL  GL              
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGL-----------QKV  288

Query  300  gtrrFDLTLLLSAAAPE-LEGAISAGNLALHCAPIVNLFPRRADRVAVTPRHHEYHVVVD  358
                 ++ +LL+  +P+ L     A++++L C+P++NLFPR + R+ VT    E H+VVD
Sbjct  289  QGNVAEIVILLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVD  348

Query  359  RTRPLDFEVYSMTRVLGHMSAQRPEQEFRPFYGSFGADADDYGAYYSLRREPRLASDSAR  418
            RTRPLD+EV+S+  V G  +       FRP+Y +   D ++ G Y+SLRREPR +S+SAR
Sbjct  349  RTRPLDYEVFSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESAR  408

Query  419  RHGTRTSYTGSEVYLSLVDRHEAPFADTLRHLGIDALCTNRDLALLLPLSGASDFSLRVS  478
            R GTRT+YTGSEV+LSLVD+HEAP+++ LRH+ + A+ TNRDL+ L+P +G  D+++  +
Sbjct  409  RYGTRTPYTGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAA  468

Query  479  APVGAIKVLHGPSRPAAAMADHGTAWQLISHLGLHYHSLTDLDETRGAQTLRELLNLYGN  538
             PV+++ +++ P  P +++A++  AW+LI +L+++Y +L+DLD+  G+Q+LR+LLNL+  
Sbjct  469  IPVAGVGLIRPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIP  528

Query  539  LADPVARKHISGVRHVRVEPMHHRLPVPGPIVYGRGVRIDLQVDETAFSGISPYLFGAVL  598
              D+   +++ ++   +  P+ +RLP +G +VYGRGV  +L VDE +FSGISPYLFG VL
Sbjct  529  AHDSPQSRQVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVL  588

Query  599  EQFFARHVSINMMSALTLSTPQRGAVASWRPRMGRRPAV  637
            E+++ARHVSIN  S +TL + QRG V +W  R G+R +V
Sbjct  589  EHYIARHVSINTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

103) BB0805 in NC_002927


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  474 bits (1786),  Expect = 9e-135, Method: Compositional matrix adjust.
 Identities = 292/639 (46%), Positives = 446/639 (70%), Gaps = 14/639 (2%)

Query  1    MDARLLDYYNRELVYMRELGAEFARQHPKVAGRLGMHGTEVADPYVERLLEGFSFLAARI  60
            MD+RLL+YYNREL Y+RE GAEFA  HPK+A+RLGM+GT++ADPYVER++E+FSFL+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   HLKMDAEFPRFTQRLLEVVHPHYLAPTPAMAVAQFSPSMNEGTLAGGFTLPRGTVLRGGL  120
            +LK+DAEFPRFTQRLLEVV+P+Y++PTP+MAV ++ P  +EG LA G T+PR+T + + +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  ARGEQTPCEFMTGHALRLWPLRVTAAELTGAPTDlplarlglggreagVASALRLRLEVC  180
            + GE+T+C+F +++ + LWPL +    LT+AP D+P  +  L      VA+ALR+ L   
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIH-VAGALRITLRTF  179

Query  181  GGVSLEEL-DLDQLVFYLNGPDAPMQRLLELIMCHTVAVLGHDSERPVSWINRLPADAVR  239
            G +++ EL +  +L FYL G +    +L+EL+   +VA L+ ++ +  + +N    ++V 
Sbjct  180  GELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVA  239

Query  240  HEGFADDQALLPTDTRVFQGYRLLQEYFAFARRYLFFSLNGLKQGLCtrraapaaaagpa  299
            HEG+  +Q+LLP    VF+G  LL+E+FA + R+ FF+  GL  GL              
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGL-----------QKV  288

Query  300  gtrrFDLTLLLSAAAPE-LEGAISAGNLALHCAPIVNLFPRRADRVAVTPRHHEYHVVVD  358
                 ++ +LL+  +P+ L     A++++L C+P++NLFPR + R+ VT    E H+VVD
Sbjct  289  QGNVAEIVILLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVD  348

Query  359  RTRPLDFEVYSLTRVLGHMSAQRPEQEFRPFYGSFGADADDYGAYYSLRREPRLASDSAR  418
            RTRPLD+EV+S+  V G  +       FRP+Y +   D ++ G Y+SLRREPR +S+SAR
Sbjct  349  RTRPLDYEVFSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESAR  408

Query  419  RHGTRTSYTGSEVYLSLVDRHEAPFADTLRHLGIDALCTNRDLALLLPLGGASDFSLRVS  478
            R GTRT+YTGSEV+LSLVD+HEAP+++ LRH+ + A+ TNRDL+ L+P  G  D+++  +
Sbjct  409  RYGTRTPYTGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAA  468

Query  479  APVGAIKVLHGPSRPAAAMADHGTAWQLISHLGLHYHSLTDLDETRGAQTLRELLNLYGN  538
             PV+++ +++ P  P +++A++  AW+LI +L+++Y +L+DLD+  G+Q+LR+LLNL+  
Sbjct  469  IPVAGVGLIRPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIP  528

Query  539  LADPVARKHISGVRHVRVEPMHHRLPVPGPIVYGRGVRIDLQVDETAFSGISPYLFGAVL  598
              D+   +++ ++   +  P+ +RLP +G +VYGRGV  +L VDE +FSGISPYLFG VL
Sbjct  529  AHDSPQSRQVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVL  588

Query  599  EQFFARHVSINMMSALTLSTPQRGAVASWRPRMGRRPAV  637
            E+++ARHVSIN  S +TL + QRG V +W  R G+R +V
Sbjct  589  EHYIARHVSINTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

104) BN117_0751 in NC_018828


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  474 bits (1786),  Expect = 9e-135, Method: Compositional matrix adjust.
 Identities = 292/639 (46%), Positives = 446/639 (70%), Gaps = 14/639 (2%)

Query  1    MDARLLDYYNRELVYMRELGAEFARQHPKVAGRLGMHGTEVADPYVERLLEGFSFLAARI  60
            MD+RLL+YYNREL Y+RE GAEFA  HPK+A+RLGM+GT++ADPYVER++E+FSFL+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   HLKMDAEFPRFTQRLLEVVHPHYLAPTPAMAVAQFSPSMNEGTLAGGFTLPRGTVLRGGL  120
            +LK+DAEFPRFTQRLLEVV+P+Y++PTP+MAV ++ P  +EG LA G T+PR+T + + +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  ARGEQTPCEFMTGHALRLWPLRVTAAELTGAPTDlplarlglggreagVASALRLRLEVC  180
            + GE+T+C+F +++ + LWPL +    LT+AP D+P  +  L      VA+ALR+ L   
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIH-VAGALRITLRTF  179

Query  181  GGVSLEEL-DLDQLVFYLNGPDAPMQRLLELIMCHTVAVLGHDSERPVSWINRLPADAVR  239
            G +++ EL +  +L FYL G +    +L+EL+   +VA L+ ++ +  + +N    ++V 
Sbjct  180  GELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVA  239

Query  240  HEGFADDQALLPTDTRVFQGYRLLQEYFAFARRYLFFSLNGLKQGLCtrraapaaaagpa  299
            HEG+  +Q+LLP    VF+G  LL+E+FA + R+ FF+  GL  GL              
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGL-----------QKV  288

Query  300  gtrrFDLTLLLSAAAPE-LEGAISAGNLALHCAPIVNLFPRRADRVAVTPRHHEYHVVVD  358
                 ++ +LL+  +P+ L     A++++L C+P++NLFPR + R+ VT    E H+VVD
Sbjct  289  QGNVAEIVILLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVD  348

Query  359  RTRPLDFEVYSLTRVLGHMSAQRPEQEFRPFYGSFGADADDYGAYYSLRREPRLASDSAR  418
            RTRPLD+EV+S+  V G  +       FRP+Y +   D ++ G Y+SLRREPR +S+SAR
Sbjct  349  RTRPLDYEVFSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESAR  408

Query  419  RHGTRTSYTGSEVYLSLVDRHEAPFADTLRHLGIDALCTNRDLALLLPLGGASDFSLRVS  478
            R GTRT+YTGSEV+LSLVD+HEAP+++ LRH+ + A+ TNRDL+ L+P  G  D+++  +
Sbjct  409  RYGTRTPYTGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAA  468

Query  479  APVGAIKVLHGPSRPAAAMADHGTAWQLISHLGLHYHSLTDLDETRGAQTLRELLNLYGN  538
             PV+++ +++ P  P +++A++  AW+LI +L+++Y +L+DLD+  G+Q+LR+LLNL+  
Sbjct  469  IPVAGVGLIRPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIP  528

Query  539  LADPVARKHISGVRHVRVEPMHHRLPVPGPIVYGRGVRIDLQVDETAFSGISPYLFGAVL  598
              D+   +++ ++   +  P+ +RLP +G +VYGRGV  +L VDE +FSGISPYLFG VL
Sbjct  529  AHDSPQSRQVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVL  588

Query  599  EQFFARHVSINMMSALTLSTPQRGAVASWRPRMGRRPAV  637
            E+++ARHVSIN  S +TL + QRG V +W  R G+R +V
Sbjct  589  EHYIARHVSINTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

105) BN115_0774 in NC_018829


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  473 bits (1781),  Expect = 2e-134, Method: Compositional matrix adjust.
 Identities = 291/638 (46%), Positives = 449/638 (71%), Gaps = 13/638 (2%)

Query  1    MDARLLDYYNRELVYMRELGAEFARQHPKVAGRLGMHGTEVADPYVERLLEGFSFLAARI  60
            MD+RLL+YYNREL Y+RE GAEFA  HPK+A+RLGM+GT++ADPYVER++E+FSFL+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   HLKMDAEFPRFTQRLLEVVHPHYLAPTPAMAVAQFSPSMNEGTLAGGFTLPRGTVLRGGL  120
            +LK+DAEFPRFTQRLLEVV+P+Y++PTP+MAV ++ P  +EG LA G T+PR+T + + +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  ARGEQTPCEFMTGHALRLWPLRVTAAEFTGAPTDlplarlglggreagVASALRLRLEVC  180
            + GE+T+C+F +++ + LWPL +    +T+AP D+P  +  L      VA+ALR+ L   
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIH-VAGALRITLRTF  179

Query  181  GGVSLEEL-DLDQLVFYLNGPDAPMQRLLELVMCHTVAVLGHDSERPVSWINRLPADAVR  239
            G +++ EL +  +L FYL G +    +L+EL+   +VA L+ ++ +  + +N    ++V 
Sbjct  180  GELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVA  239

Query  240  HEGFADDQALLPTDTRVFQGYRLLQEYFAFARRYLFFSLNGLKQGLrtpraaaaaagpag  299
            HEG+  +Q+LLP    VF+G  LL+E+FA + R+ FF+  GL  GL+  ++  A      
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVA------  293

Query  300  trrFDLTLLLSAAAPE-LEGAISAENLALHCAPIVNLFPRRADRVAVTPRHHEYHVVVDR  358
                ++ +LL+  +P+ L     A +++L C+P++NLFPR + R+ VT    E H+VVDR
Sbjct  294  ----EIVILLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDR  349

Query  359  TRPLDFEVYGLTRVLGHMSAQRPEQEFRPFYGSFGADADDYGAYYSLRREPRLASDSARR  418
            TRPLD+EV+++  V G  +       FRP+Y +   D ++ G Y+SLRREPR +S+SARR
Sbjct  350  TRPLDYEVFSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARR  409

Query  419  HGTRTSYTGSEVYLSLVDRQEAPFADTLRHLGIDALCTNRDLALLLPLGGASDFSLRVSA  478
             GTRT+YTGSEV+LSLVD++EAP+++ LRH+ + A+ TNRDL+ L+P  G  D+++  + 
Sbjct  410  YGTRTPYTGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAI  469

Query  479  PVGAIKVLHGPSRPAAAMAEHGTAWQLISHLGLHYHSLTDLDETRGAQTLRELLNLYGNL  538
            PV+++ +++ P  P +++AE+  AW+LI +L+++Y +L+DLD+  G+Q+LR+LLNL+   
Sbjct  470  PVAGVGLIRPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPA  529

Query  539  ADPVARKHISGVRHVRVEPMHHRLPVPGPIVYGRGVRIDLQVDETAFSGISPYLFGAVLE  598
             D+   +++ ++   +  P+ +RLP +G +VYGRGV  +L VDE +FSGISPYLFG VLE
Sbjct  530  HDSPQSRQVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLE  589

Query  599  QFFARHVSINMMSALTLSTPQRGAVASWRPRMGRRPAV  636
            +++ARHVSIN  S +TL + QRG V +W  R G+R +V
Sbjct  590  HYIARHVSINTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

106) BPP0719 in NC_002928


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  469 bits (1769),  Expect = 2e-133, Method: Compositional matrix adjust.
 Identities = 291/639 (46%), Positives = 445/639 (70%), Gaps = 14/639 (2%)

Query  1    MDARLLDYYNRELVYMRELGAEFARQHPKVAGRLGMHGTEVADPYVERLLEGFSFLAARI  60
            MD+RLL+YYNREL Y+RE GAEFA  HPK+A+RLGM+GT++ADPYVER++E+FSFL+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   HLKMDAEFPRFTQRLLEVVHPHYLAPTPAMAVAQFSPSMNEGTLAGGFTLPRGTVLRGGL  120
            +LK+DAEFPRFTQRLLEVV+P+Y++PTP+MAV ++ P  +EG LA G T+PR+T + + +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  ARGEQTPCEFMTGHALRLWPLRVTAAELTGAPTDlplarlglggreagVASALRLRLEVC  180
            + GE+T+C+F +++ + LWPL +    LT+AP D+P  +  L      VA+ALR+ L   
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIH-VAGALRITLRTF  179

Query  181  GGVSLEEL-DLDQLVFYLNGSDAPMQRLLELIMCHTVAVLGHDSERPVSWINRLPADAVR  239
            G +++ EL +  +L FYL G +    +L+EL+   +VA L+ ++ +  + +N    ++V 
Sbjct  180  GELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVA  239

Query  240  HEGFADDQALLPTDTRVFQGYRLLQEYFAFARRYLFFSLNGLKQGLCtrraapaaaagpa  299
            HEG+  +Q+LLP    VF+G  LL+E+FA + R+ FF+  GL  GL              
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGL-----------QKV  288

Query  300  gtrrFDLTLLLSAAAPE-LEGAISAGNLALHCAPIVNLFPRRADRVAVTPRHHEYHVVVD  358
                 ++ +LL+  +P+ L     A++++L C+P++NLFPR + R+ VT    E H+VVD
Sbjct  289  QGNVAEIVILLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVD  348

Query  359  RTRPLDFEVYSLTRVLGHMSAQRPEQEFRPFYGSFGADADDYGAYYSLRREPRLASDSAR  418
            RTRPLD+EV+S+  V G  +       FRP+Y +   D ++ G Y+SLRREPR +S+SAR
Sbjct  349  RTRPLDYEVFSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESAR  408

Query  419  RHGTRTSYTGSEVYLSLVDRHEAPFADTLRHLGIDALCTNRDLALLLPLGGASDFSLRVS  478
            R GTRT+YTGSEV+LSLVD+HEAP+++ LRH+ + A+ TNRDL+ L+P  G  D+++  +
Sbjct  409  RYGTRTPYTGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAA  468

Query  479  APVGAIKVLHGPSRPAAAMADHGTAWQLISHLGLHYHSLTDLDETRGAQTLRELLNLYGN  538
             PV+++ +++ P  P +++A++  AW+LI +L+++Y +L+DLD+  G+Q+LR+LLNL+  
Sbjct  469  IPVAGVGLIRPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIP  528

Query  539  LADPVARKHISGVRHVRVEPMHHRLPVPGPIVYGRGVRIDLQVDETAFSGISPYLCGAVL  598
              D+   +++ ++   +  P+ +RLP +G +VYGRGV  +L VDE +FSGISPYL G VL
Sbjct  529  AHDSPQSRQVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVL  588

Query  599  EQFFARHVSINMMSALTLSTPQRGAVASWRPRMGRRPAV  637
            E+++ARHVSIN  S +TL + QRG V +W  R G+R +V
Sbjct  589  EHYIARHVSINTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

107) Bpet4112 in NC_010170


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  465 bits (1751),  Expect = 5e-132, Method: Compositional matrix adjust.
 Identities = 288/636 (46%), Positives = 445/636 (70%), Gaps = 11/636 (1%)

Query  1    MDARLLDYYNRELVYMREMGAEFAQMYPKVAGRLGMHGTEVADPYVERLLEGFSFLTARI  60
            MD+RLL+YYNREL Y+RE GAEFA + PK+A+RLGM+GT++ADPYVER++E+FSFL+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   HLKMDAEFPRFSQRLLEVVYPNYLAPTPAMAVVQFSPSMNEGTLARGFDLPRGTLLRGRV  120
            +LK+DAEFPRF+QRLLEVV PNY++PTP+MAVV++ P  +EG LA+G  +PR+T + + +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PRGEQTSCEFMTGHAVRLWPLRVAEAEFtgpppdlpltrlglggrNGRVLSALRMRIEVC  180
            P GE+T+C+F +++ V LWPL + E  +T++PPD+P  +  L   N +V +ALR+ +   
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPP-NIHVAGALRITLRTF  179

Query  181  GGVRLEDM-DLDQLVFHLAGQDLQMQRLLEIIMGHTVAVLGHDSARPVTWINKLAPTSVR  239
            G + + ++ +  +L F L G++    +L+E++   +VA L+ ++++    +N     +V 
Sbjct  180  GELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVA  239

Query  240  HEGFDDEQALLPADSRVFQGYRLLQEYFAFPRRYLFFSLNDLKRGLRTPALAGGERRETR  299
            HEG++  Q+LLP    VF+G  LL+E+FA P R+ FF+  +L  GL        ++ +  
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGL--------QKVQGN  291

Query  300  SFDLTMLFSTAAPE-LEGAIAAEHLALHCAPVINLFPKRADRIAVTPRTNEYHLVVDRTR  358
              ++ +L++  +P+ L     A +++L C+PVINLFP+ + RI VT    E HLVVDRTR
Sbjct  292  VAEIVILLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTR  351

Query  359  PLDYEVFGVTRVVGHASAERPEQEFRSFYGTLGSDPDDYGAYYSLRREPRLLSDHAQRNG  418
            PLDYEVF+V  V G  +       FR++Y T  +D ++ G Y+SLRREPR  S+ A+R G
Sbjct  352  PLDYEVFSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYG  411

Query  419  TRTGYTGSEVFVSLVDRHEAPFSGQLRHLTLETLCTNRDLAMLLPLGTETDFTLRVSAPV  478
            TRT YTGSEVF+SLVD+HEAP++ +LRH+T+ ++ TNRDL+ L+P     D+T+  + PV
Sbjct  412  TRTPYTGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPV  471

Query  479  GAVKVLHGPTRPHTALAENAATWHLISHLGLNYLSLIDLDAEQGAQTLREMLHVYGNLAD  538
            ++V +++ P  P+ +LAE   +W+LI +L++NYL+L DLD   G+Q+LR++L+++    D
Sbjct  472  AGVGLIRPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHD  531

Query  539  PVVRKHIGGVRHVQAEPMHHRLPVPGPIVYGRGVRIGLQVDETAFSGISPYLFGAVLEQF  598
            +   +++ ++   ++ P+ +RLP +G +VYGRGV   L VDE +FSGISPYLFG VLE++
Sbjct  532  SPQSRQVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHY  591

Query  599  FARHVSLNMMSELVLSTLQRGEIARWKPRMGARPAV  634
            +ARHVS+N  S++ L ++QRG++  W  R G R +V
Sbjct  592  IARHVSINTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

108) AXYL_06392 in NC_014640


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  460 bits (1734),  Expect = 1e-130, Method: Compositional matrix adjust.
 Identities = 282/636 (45%), Positives = 444/636 (70%), Gaps = 11/636 (1%)

Query  1    MDDRLLDYYNRELVYLRELGAEFAQAHPKVAGRLGMNATEVADPYVERLLEGFSFLTARI  60
            MD RLL+YYNREL YLRE GAEFA  HPK+A+RLGM++T++ADPYVER++E+FSFL+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   HMKMDAEFPRFSQRLLEVVYPNYLAPTPAMAIVQFAPSMNEGTLAGGFELPRGTLLRGRV  120
            ++K+DAEFPRF+QRLLEVV PNY++PTP+MA+V++ P  +EG LA G  +PR+T + + +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  ARGEQTPCDFTTGHALRLWPLQVTQAEFTAAPQDLPLARLGLTGRTARVLSALRIRIEVC  180
            + GE+T+C+F +++ + LWPL + +  +TAAP D+P  +  L     +V +ALRI +   
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPP-NIHVAGALRITLRTF  179

Query  181  GGQRLEDL-DLDQLVFHLNGQDLQMQRLLEVVMGHTVAVLGHDAARPLAWINRLPPGAVR  239
            G   + +L +  +L F L G++    +L+E++   +VA L+ ++++  + +N     +V 
Sbjct  180  GELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVA  239

Query  240  HEGFADEQALLPGDARVFQGYRLLQEYFAFAQRYLFFSINGLKRGLRTPAMPQGAQRETR  299
            HEG+   Q+LLP    VF+G  LL+E+FA ++R+ FF+  GL  GL+          +  
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKV--------QGN  291

Query  300  AFDLTLLFSMAAPE-LEGAISAANLALHCAPVINLFAKRADRVAVTPRTSEYHVVIDRSR  358
              ++ +L++  +P+ L     AA+++L C+PVINLF++ + R+ VT   +E H+V+DR+R
Sbjct  292  VAEIVILLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTR  351

Query  359  PLDYEVYGVTRVAGHASAQRQEQEFRPFYGSLGSDPDEHGAYFSVRREARLVSDIAQRNG  418
            PLDYEV++V  V G  +   +   FRP+Y +  +D ++HG YFS+RRE+R  S+ A+R G
Sbjct  352  PLDYEVFSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYG  411

Query  419  TRSGYIGSEVFLSLVDRREAPFSGDLRHLTLETLCTNRDLALLLPLGTETDMTLRVSAPV  478
            TR+ Y GSEVFLSLVD++EAP++ +LRH+T+ ++ TNRDL+ L+P     D+T+  + PV
Sbjct  412  TRTPYTGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPV  471

Query  479  RSVKVLHGPTRPRAALAENAATWHLISHLGLNYLSLTDLDAEQGAQTLREMLHVYGSLAE  538
             +V +++ P  P+++LAE   +W+LI +L++NYL+L+DLD   G+Q+LR++L+++ +  +
Sbjct  472  AGVGLIRPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHD  531

Query  539  PATRRHIAGLRHVSATPVHHRLPVPGPIVHGRGVRIALQVDETAFSGISPYLFGAVLEQF  598
            ++  R++ +L    +TPV +RLP +G +V GRGV   L VDE +FSGISPYLFG VLE++
Sbjct  532  SPQSRQVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHY  591

Query  599  FARHVSINLMSELVLSSLQRGEIARYQPRMGRRPVV  634
            +ARHVSIN  S++ L S+QRG++     R G+R  V
Sbjct  592  IARHVSINTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

109) Aave_1480 in NC_008752


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  460 bits (1733),  Expect = 1e-130, Method: Compositional matrix adjust.
 Identities = 278/629 (45%), Positives = 434/629 (69%), Gaps = 7/629 (1%)

Query  1    MNPRLVEYYNRELSYLRELGAEFAAAFPKVAGRLSLRELEVADPYVERLLEGFSFLTARI  60
            M+PRL+EYYNRELSYLRE GAEFA+  PK+A+RL+++  ++ADPYVER++E+FSFL+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QMKMDAEFPRLSQRILEMVCPHYLAPTPSMVVVQMEPSGTEGSLVEGYTLEAGSVIRGRK  120
            Q+K+DAEFPR++QR+LE+V P+Y++PTPSM VV++ P   EG L  G T+  ++ + +  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  TAEDQTPCDFRTGHAVTLWPIDLQQARLGGPPLDLP-LSRFGLAE-EAAGHLRFTLSVRG  178
               ++T+C+FR+++ VTLWP+ +++ RL ++P D+P L R+  ++ + AG LR+TL   G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  AAQWRNLR-MDRLDLHISAGDAVASHLQELIHESVMGVIVHDPQD-ASRVWAQLPAESVQ  236
                 +L    RL + + + + +ASHL EL+H S ++ +  +P +  + +  +L  ++V 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQ-HPVA  239

Query  237  PEGYEQSQALLPYTHRAFQGHRLLHEYFAFPARFRFFSIRGLREALDRVPGPQVGITLLL  296
             EG E +Q+LLP +   F+GH LLHE+FA P RF FF+  GL  +L++V G    I +LL
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  297  RRAQPT-LEAQVDRNKFLLHCVPAINLFERPADRIHVSPGVSEYHVVPDRTRPRDFEVYS  355
             R  P  L  Q D  +F L C P INLF R + RI+V+ +V+E H+V DRTRP D+EV+S
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  356  ILGVTGHREGQLKDQDFLPFFASVHGLRASEQAYFAVRREPRLFSEHATRFGPRTQYLGS  415
            +  V G      +   F P++ + +   +++  YF++RREPR  SE A R+G RT Y GS
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGS  419

Query  416  EVFISLVDQRAAPFADDLKQLSVRTLCTNRDLPLLMGGKGEQSDFSLVESAPVASVRTVA  475
            EVF+SLVDQ+ AP++++L++++V ++ TNRDLP L+  +  + D+++  + PVA+V  + 
Sbjct  420  EVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLI-PRNGRDDLTVDAAIPVAGVGLIR  478

Query  476  GPTRPTASIAENEMTWRLISHLSLNYLAMSDLSEEEGAATLRDLLRLYIDHGDRDLSGQI  535
             P  P +++AE EM+WRLI +LS+NYL+++DL +  G+ +LRDLL L+I   D   S Q+
Sbjct  479  PPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQV  538

Query  536  AAIRSLAIAPVTRRLPQHGQLVYGRGVGITLGVDEGPLAGVSPWPLASILERFFARHVGV  595
             ++ +   +PVTRRLP  G LVYGRGV+  L VDE  ++G+SP  ++ +LE+++ARHV++
Sbjct  539  RSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSI  598

Query  596  NSYTELSLRSRQRGAVARWKVRPGQRPAA  624
            N++++++L+S QRG V  W VR GQR + 
Sbjct  599  NTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

110) Acav_1519 in NC_015138


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  460 bits (1732),  Expect = 2e-130, Method: Compositional matrix adjust.
 Identities = 279/629 (45%), Positives = 432/629 (69%), Gaps = 7/629 (1%)

Query  1    MNPRLVEYYNRELSYLRELGAEFAAAFPKVAGRLSLRELEVADPYVERLLEGFSFLTARI  60
            M+PRL+EYYNRELSYLRE GAEFA+  PK+A+RL+++  ++ADPYVER++E+FSFL+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QMKMDAEFPRLSQRILEMVCPHYLAPTPSMVVVQMEPSGTEGSLVEGYTLEAGSVIRGRK  120
            Q+K+DAEFPR++QR+LE+V P+Y++PTPSM VV++ P   EG L  G T+  ++ + +  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  TAEDQTPCDFRTGHAVTLWPIDLLQARLGGPPLDLP-LSRFGLAE-EAAGHLRFTLSVRG  178
               ++T+C+FR+++ VTLWP+ + + RL ++P D+P L R+  ++ + AG LR+TL   G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  AAQWRNLR-MDRLDLHISAGDAVASHLQELIHESVMGVIVHDPQD-ASKVWAQLPAESVQ  236
                 +L    RL + + + + +ASHL EL+H S ++ +  +P +  + +  +L  ++V 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQ-HPVA  239

Query  237  PEGHEQSQALLPYTHRAFQGHRLLHEYFAFPARFRFFSIRGLREALDRVPGAQVGITLLL  296
             EG E +Q+LLP +   F+GH LLHE+FA P RF FF+  GL  +L++V G    I +LL
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  297  RRAQPS-LEAQVDRHKFLLHCVPAINLFERPADRIHVSPGVNEYHVVPDRTRPRDFEVYS  355
             R  P  L  Q D  +F L C P INLF R + RI+V+ +V E H+V DRTRP D+EV+S
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  356  VLAVTGHREGQLKDQDFVPFFASVHGLRASEQAYFAVRREPRLFSEHATRFGPRTQYLGS  415
            V  V G      +   F P++ + +   +++  YF++RREPR  SE A R+G RT Y GS
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGS  419

Query  416  EVFISLVDQRAAPFADDLKQLSVRVLCTNRDLPLLMAGKGEQSDFTLVESAPVASVRTVA  475
            EVF+SLVDQ+ AP++++L++++V  + TNRDLP L++ +  + D+T+  + PVA+V  + 
Sbjct  420  EVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIP-RNGRDDLTVDAAIPVAGVGLIR  478

Query  476  GPTRPTASIAENEMTWRLISHLSLNYLAMSDLSEEEGAATLRDLLRLYIDHGDRDLSGQI  535
             P  P +++AE EM+WRLI +LS+NYL+++DL +  G+ +LRDLL L+I   D   S Q+
Sbjct  479  PPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQV  538

Query  536  AAIRSLSIAPVTRRLPQHGQLVYGRGVGITLGVDEGPLAGVSPWPLASILERFFARHVGV  595
             ++ +   +PVTRRLP  G LVYGRGV+  L VDE  ++G+SP  ++ +LE+++ARHV++
Sbjct  539  RSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSI  598

Query  596  NSYTELSLRSRQRGSIARWKVRPGQRPAA  624
            N++++++L+S QRG +  W VR GQR + 
Sbjct  599  NTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

111) D781_2794 in NC_020064


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  454 bits (1709),  Expect = 1e-128, Method: Compositional matrix adjust.
 Identities = 284/635 (45%), Positives = 440/635 (70%), Gaps = 15/635 (2%)

Query  1    MDSKLLEYYNRELAYLREMGAEFAEQYPKVAGRLGMRGIDVADPYIERLMEGFAFLTSRV  60
            MD++LLEYYNREL+YLRE GAEFA   PK+A+RLGM+G D+ADPY+ER++E+F+FL++R 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFSQRLLEIIYPNYLSPTPSMAIAELQPDSSKGDISNGFTVPRGTMMDSQT  120
            QLK+DAEFPRF+QRLLE++ PNY++PTPSMA+  L PD+  GD+++G TVPR+T   S  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  LKKNGITCSYTTAHDVTLQPVRLKSVELGGIPADIP----FSSLGLQNRGCVSALRIRLE  176
               +  +C + +++DVTL P+ +  V L + P+D+P    + +  ++  G   ALRI L 
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAG---ALRITLR  177

Query  177  CYDSVTLNSL-DLDNLMFYLSGPDmqaqqllellmqHSVGMLCQTVEP-QPQRRVLADDA  234
             ++ ++++ L +   L FYL G +  A +L+ELL   +V+ L       + +  V  +++
Sbjct  178  TFGELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHP  237

Query  235  LRQEGFAPEQALLPNDLRNFDGYRLLQEYFAFPARFQFFSISGLQPLLRSVRESKKTLRQ  294
            + +EG+ P Q+LLP     F+G  LL+E+FA P RF FF+ +GL + L+ V+ +      
Sbjct  238  VAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVA----  293

Query  295  FEIVVLLDRHDAA-LERVIDVSHLALHCTPVINLFPKVAERITLNEKNHEYHLVVDNIRP  353
             EIV+LL+R  +  L +  D ++++L CTPVINLFP+ + RI + +   E HLVVD  RP
Sbjct  294  -EIVILLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRP  352

Query  354  LDYEVFSVQRLGGSASEKRYEQEFRPFYSTLSEDDGNYGAYFSLRREQRTLSSHARRYGT  413
            LDYEVFSVQ + G  +E      FRP+Y T ++D+GN G YFSLRRE R  S  ARRYGT
Sbjct  353  LDYEVFSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGT  412

Query  414  RTGYVGSEVFVSLVDERQSPWHSDLKYLTADVLCTSRDLPLMLMQQDQGNFVMPDSIPIK  473
            RT Y GSEVF+SLVD++++P   +L+ +T   + T+RDLP ++ +++++++ +  +IP+ 
Sbjct  413  RTPYTGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVA  472

Query  474  RVFLRKGPTPPRPALAEGMITWRLISQLQLNYLSLMDGDPEQGAASLRQLLGLYGNLSEP  533
             V L + P PP+P+LAE  ++WRLI QL +NYL+L D D   G+ +LR+LL L+    ++
Sbjct  473  GVGLIRPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDS  532

Query  534  AIAKQIQGVRSCNLRPVYRRVPEPGPIVFARGIAIDLTVDDQAFSGNSPYLLGSVLERLF  593
            + ++Q++++ +C+  PV RR+P +G +V++RG++ +LTVD+++FSG SPYL+G VLE+ +
Sbjct  533  PQSRQVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYI  592

Query  594  SRLVAMNTFTEMTLSSQQRGEIAHWQARMGKRTLI  628
            +R V++NTF++MTL S QRG++  W  R G+R  +
Sbjct  593  ARHVSINTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

112) impG in NC_020211


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  454 bits (1709),  Expect = 1e-128, Method: Compositional matrix adjust.
 Identities = 284/632 (45%), Positives = 436/632 (69%), Gaps = 9/632 (1%)

Query  1    MDSKLLDYYNRELAYLREMGAEFAEQYPKVAGRLGMRGIDVADPYIERLMEGFAFLTSRV  60
            MD++LL+YYNREL+YLRE GAEFA   PK+A+RLGM+G D+ADPY+ER++E+F+FL++R 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFSQRLLEIIYPNYLSPTPSMAIAELQPDSSKGDISNGFVVPRGTMMDSQT  120
            QLK+DAEFPRF+QRLLE++ PNY++PTPSMA+  L PD+  GD+++G  VPR+T   S  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  LKKSGITCSYTTAHDVTLQPVRIAGVELGGIPADIP-LASLGLQHSGCVSALRIRLECYE  179
                  +C + +++DVTL P+ I  V L + P+D+P L      +    +ALRI L  + 
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  180  SVTLNNLQ-LDQLMFYLAGPDmqaqqllellmqHSVG-LVCQTVEAQPQRRALALDGLRQ  237
             +++++L    +L FYL G +  A +L+ELL   +V+ L  +  + + +      + + +
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  238  EGFAADQALLPNDLRNFEGYRLLQEYFAFPARFQFFSVNGLRPLLQSVREGKKGLRQFEI  297
            EG+ ++Q+LLP     F+G  LL+E+FA P RF FF+  GL + LQ V+         EI
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVA-----EI  295

Query  298  VVLLDRHDAA-LERVVDVAHLALHCTPVINLFPKVAERIAINEKNHEYHLVVDNIRPLDY  356
            V+LL+R  +  L +  D A+++L CTPVINLFP+ + RI + +   E HLVVD  RPLDY
Sbjct  296  VILLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDY  355

Query  357  EVFSVQRLGGSASEKRYEQEFRPFYSTLSADDGNYGAYFSLRREQRTLSEPARRYGTRTG  416
            EVFSVQ + G  +E      FRP+Y T + D+GN G YFSLRRE R  SE+ARRYGTRT 
Sbjct  356  EVFSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTP  415

Query  417  YAGSEVFVSLVDERQSPWHSDLKYLTADVLCTSRDLPLMLLQQDQGNFVMPDSIPIKQVS  476
            Y+GSEVF+SLVD++++P   +L+ +T   + T+RDLP ++ +++++++ +  +IP+  V+
Sbjct  416  YTGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVG  475

Query  477  LRKGPTPPRPALAEGMITWRLISQLQLNYLSMMDGDPEQGAASLRQLLGLYGNLSEPAIA  536
            L + P PP+P+LAE  ++WRLI QL +NYL++ D D   G+ +LR+LL L+    +++ +
Sbjct  476  LIRPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQS  535

Query  537  KQIQGVRHCNLRPVYRRVPEPGPIVFARGIAIDLTVDEQAFSGNSPYLLGSVLERLFSRL  596
            +Q++++  C+  PV RR+P +G +V++RG++ +LTVDE++FSG SPYL+G VLE+ ++R 
Sbjct  536  RQVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARH  595

Query  597  VAMNTFTEMTLSSQQRGEIAHWQARMGKRTLI  628
            V++NTF++MTL S QRG++  W  R G+R  +
Sbjct  596  VSINTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

113) H650_00845 in NC_021500


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  453 bits (1707),  Expect = 2e-128, Method: Compositional matrix adjust.
 Identities = 285/628 (46%), Positives = 435/628 (70%), Gaps = 6/628 (0%)

Query  1    MDSKLLEYYNRELAWLREMGQEFAARYPKVAGRLGMRGMDVSDPYVERLMEGFAFLTSRV  60
            MD++LLEYYNREL+ LRE G EFA+  PK+A+RLGM+G D++DPYVER++E+F+FL++R 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFSQRLLEMVAPNYLAPTPSMAIAELQPDSAKGDLSNGFVVPRGTMMDSQV  120
            QLK+DAEFPRF+QRLLE+V PNY++PTPSMA+  L PD+  GDL++G  VPR+T   S +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  MKKNGVTCSYTTAHDVTLLPLKISQVELGGVPADLPLAQVGLSQR-GAQSALRIRLSCDG  179
               +  +C + +++DVTL PL I +V L + P+D+P  +  L+      +ALRI L   G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  180  PVNLSHL-DFDRLEFFLSGPDMQALKLLELVMEHQVGILCQANGQKTPPLVLA-DDALRQ  237
             + +S+L +  RL F+L G +  A  L+EL+    V+ L    G+    L +  ++++ +
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  238  EGFSADQALLPDDLRNFDGYRLLQEYFAFPSRFLFISLHGLRTMLTQSGEAKSFDIIILL  297
            EG+ ++Q+LLP     F+G  LL+E+FA P RF F++  GL + L Q  +++  +I+ILL
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGL-QKVQGNVAEIVILL  299

Query  298  DKADAQ-LERVVDKSHLALHCTPVINLFPKVAERQKLSDSLHEYHLVVDNIRPLDYEIYA  356
            ++  ++ L +  D ++++L CTPVINLFP+ + R  +++S+ E HLVVD  RPLDYE+++
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  357  VTKIHASIDGQRDEQTFRPFWSSWSQDEGNYGAYFSLRREQRALSEHAQRYGTRTGYIGS  416
            V  +++          FRP+  ++++DEGN G YFSLRRE R  SE A+RYGTRT Y GS
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGS  419

Query  417  EVFASLVDEQHAPWREELRYITAEVLCTSRDLP-LMLQQEIGQFVLPDSLPVKTLQLRKG  475
            EVF SLVD+++AP  E+LR IT   + T+RDLP L+ ++  +++ +  ++PV  + L + 
Sbjct  420  EVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRP  479

Query  476  PTPPRPALAEGLSTWRLISQLQMNYLSLMDGEDGEGAAALRQLLGLYTRLAEAPVARQIE  535
            P PP+P+LAE   +WRLI QL  NYL+L D ++  G+ ALR+LL L+    ++P +RQ+ 
Sbjct  480  PRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVR  539

Query  536  GVRHCVLEPVHRRVPEPGPIVFARGIGITLTVDEQAFSGFSPYLFGSVLERVFARLVGMN  595
            ++  C   PV RR+P +G +V++RG++  LTVDE++FSG+SPYLFG VLE+ +AR V++N
Sbjct  540  SLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSIN  599

Query  596  SFTEFTLKSQQRGEVGYWPPRMGKRALI  623
            +F++ TL S QRG+V  WP R G+R+ +
Sbjct  600  TFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

114) Spro_3011 in NC_009832


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  453 bits (1705),  Expect = 2e-128, Method: Compositional matrix adjust.
 Identities = 283/632 (45%), Positives = 438/632 (70%), Gaps = 9/632 (1%)

Query  1    MDSKLLDYYNRELAYLREMGAEFAEQYPKVAGRLGMRGIDVADPYIERLMEGFAFLTSRV  60
            MD++LL+YYNREL+YLRE GAEFA   PK+A+RLGM+G D+ADPY+ER++E+F+FL++R 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFSQRLLEIIYPNYLSPTPSMAIAELQPDSNKGDISNGFVVPRGTMMDSQS  120
            QLK+DAEFPRF+QRLLE++ PNY++PTPSMA+  L PD++ GD+++G  VPR+T   S  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  LKKSGITCSYTTAHDVTLQPVRLKSVELGGIPADIP-LAALGLQHSGCVSALRIRLECYD  179
                  +C + +++DVTL P+ +  V L + P+D+P L      +    +ALRI L  ++
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  180  SVTLNNLQ-LDQLMFYLSGPDlqaqqllellmqHSVG-LICQTVEAQPQRRVLALDELRQ  237
             +++++L    +L FYL G +  A +L+ELL   +V+ L  +  + + +  V   + + +
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  238  EGFAADQALLPNDLRNFEGYRLLQEYFAFPARFQFFSVNGIRPLLQSVREGKKTLRQFEI  297
            EG+ ++Q+LLP     F+G  LL+E+FA P RF FF+  G+ + LQ V+         EI
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVA-----EI  295

Query  298  LVLLDRQDAA-LERVIDVAHLALHCTPVINLFPKVAERITVSEKSHEYHLVVDNIRPLDY  356
            ++LL+R  +  L +  D A+++L CTPVINLFP+ + RI V++   E HLVVD  RPLDY
Sbjct  296  VILLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDY  355

Query  357  EVFSVQRLGGSASEKRYEQEFRPFYSTLSADDGNYGAYFSLRREQRTLSEHARRYGTRTG  416
            EVFSVQ + G  +E      FRP+Y T + D+GN G YFSLRRE R  SE ARRYGTRT 
Sbjct  356  EVFSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTP  415

Query  417  YVGSEVFVSLVDERQSPWHSDLKYLTADVLCTSRDLPLMLLQQDQGNFVMPDSIPIKQVS  476
            Y GSEVF+SLVD++++P   +L+ +T   + T+RDLP ++ +++++++ +  +IP+  V+
Sbjct  416  YTGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVG  475

Query  477  LKKGPTPPRPALAEGMITWRLISQLQLNYLSMMDGDPEQGAASLRQLLGLYGNLSEPAIT  536
            L + P PP+P+LAE  ++WRLI QL +NYL++ D D   G+ +LR+LL L+    +++ +
Sbjct  476  LIRPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQS  535

Query  537  KQIQGVRHCNLRPVYRRVPEPGPIVFARGIAIDLTVDEQSFSGSSPYLLGSVLERLFSRL  596
            +Q++++  C+  PV RR+P +G +V++RG++ +LTVDE++FSG SPYL+G VLE+ ++R 
Sbjct  536  RQVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARH  595

Query  597  VAMNTFTEMTLSSQQRGEIAHWQARMGKRTLI  628
            V++NTF++MTL S QRG++  W  R G+R  +
Sbjct  596  VSINTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

115) PT7_0347 in NC_015458


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  452 bits (1703),  Expect = 3e-128, Method: Compositional matrix adjust.
 Identities = 269/613 (44%), Positives = 441/613 (72%), Gaps = 8/613 (1%)

Query  20   GAEFAERYPKVAGRLAMNGTEVADPYVERLLEGFSFLTARIQMKMDAEFPRFSQRLMDVA  79
            GAEFA   PK+A+RL+M+GT++ADPYVER++E+FSFL+AR Q+K+DAEFPRF+QRL++V 
Sbjct  20   GAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSARTQLKIDAEFPRFTQRLLEVV  79

Query  80   YPNYLAPVPSMTVVQFAPSMNEGTLATGFRLPRGTVLRAGLTQGEQTRCEFSTAHELTLW  139
             PNY++P PSM+VV++ P  +EG LA G  +PR+T + + + +GE+T C+F +++++TLW
Sbjct  80   NPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPIPEGENTACQFRSSQDVTLW  139

Query  140  PIRVESAELTGPPVDlplsrlglsgrgspVRAALRIRIALCGGSLLHEL-DLDQLMFYLN  198
            P+ +E   LT++P D+P  +  L+     V +ALRI +   G   + EL +  +L FYL 
Sbjct  140  PLSIEEVRLTAAPPDMPALHRYLPPNIH-VAGALRITLRTFGELAFSELAGPARLPFYLC  198

Query  199  GQDVQMSRLLELAVGHTVAVLCHDTSRPVSSIERLPKSVVRHEGFDTEQALLPADARLFQ  258
            G++   S+L+EL    +VA L  + ++  + ++   +  V HEG++  Q+LLP    +F+
Sbjct  199  GEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAHEGLEPGQGLLPLAWNVFH  258

Query  259  GYRLLQEYFAFPDRYRFFSINGLGPALERIGASQTCKAFELTVLLDSSVPE-LENLITAE  317
            G  LL+E+FA P+R+ FF+  GL+++L+++ ++ +    E+ +LL+   P+ L +   A 
Sbjct  259  GHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVA----EIVILLNRLPPDWLIHQTDAA  314

Query  318  HLALHCTPAINLVSRRADRIAVSTREHEHHVVVERSSPRDYEVFSVNKVIG-HISSDEQQ  376
            +++L CTP INL +R + RI V+    E+H+VV+R+ P DYEVFSV+ V G +  +  + 
Sbjct  315  QFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSVQEVEGLEAETTRKM  374

Query  377  EFRPFYSSVEKDGGDYGAYFSLRREARVLSDMGKREGTRTAYTGSEVFLSLVDRNEAPHS  436
             FRP+Y + ++D G+ G YFSLRRE+R  S+ ++R GTRT+YTGSEVFLSLVD++EAP +
Sbjct  375  IFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSEVFLSLVDQHEAPYP  434

Query  437  EKLRHLSVETLCTNRDLPLLLPRGGETDFTLRISAPVSSVRILKGPTRPRPALTDSATTW  496
            E+LRH++V ++ TNRDLP L+PR G  D+T+  + PV++V +++ P  P+P+L++   +W
Sbjct  435  ENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPPRPPQPPLAEREMAW  494

Query  497  RLISHMGLNYLSLVDVDEQQGAHAMRELLSLYTNMADAATSRQISGLRSVRIKAMHRHLP  556
            RLI ++++NYL+L D+D++ G++A+R+LL+L+    D++ SRQ+ +L + +  ++ R+LP
Sbjct  495  RLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRSLIGCKTTPVTRRLP  554

Query  557  VPGPLLMGRGVKIDVSVDETAFAGISPFMFGAVLEQFFARHVSINMMTEMSLSTLQRGQL  616
             +G L+ GRGV  +++VDE +F+GISP++FG VLE+++ARHVSIN  ++M+L ++QRG++
Sbjct  555  GSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINTFSQMTLHSMQRGHV  614

Query  617  ARWSVRLGGRPAV  629
              W+VR G R +V
Sbjct  615  MTWPVRTGQRGSV  627

116) BTI_4920 in NC_021174


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  452 bits (1701),  Expect = 4e-128, Method: Compositional matrix adjust.
 Identities = 279/627 (45%), Positives = 441/627 (71%), Gaps = 4/627 (0%)

Query  1    MDTRLLDYYNRELAYLRELGGEFAQQFPKVAARLRMHESGPPDPYVERLLEGFSFLTARV  60
            MD RLL+YYNREL+YLRE G+EFA   PK+AARL M+ ++ +DPYVER++E+FSFL+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFTQALLDAVYPGYVAPIPSMAIVQFTPMMNEGSLAQGYRLPAGTALRARP  120
            QLK+DAEFPRFTQ LL+ V P YV+P PSMA+V++ P  +EG LA+G  +P +TA+ +  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  AASEQTACEFRTAHDLTLWPLELAAATVTGAPAYLP--RSATASRRDVRGALRIRLKARG  178
            + +E+TAC+FR+++D+TLWPL +    +T+AP+ +P  +   ++  +V GALRI L++ G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  GASLAQLP-IDRLMFHLAGPERDALHLLELIAGHTIGVVCHDAAQPPRWLHVLGADALAH  237
              ++++L+   RL F L G ER A HL+EL+   +++ +  ++++    L+V   +++AH
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  238  QGFDADQALLPDDGRSFQGYRLLREYFAFPARFLFFSIEGLRPALARATGDTFELTLLLD  297
            +G++++Q+LLP     F+G  LL+E+FA P RF FF+  GL ++L +  G+  E+ +LL+
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  298  RHDAA-LENSVDARHIALNCTPAVNLFARRADRIPVHPGAREHHVVVDRSRPLDYEVYAV  356
            R  +  L +  DA +++L CTP +NLF+R + RI V  +  E+H+VVDR+RPLDYEV++V
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  357  RRLASEPRDDGQARVFRPFHASFAGDDGNYGAYYTVRREPRLVSAQARANGTRTGYVGSE  416
            + + +   +  +  +FRP+  +   D+GN G Y+++RREPR  S  AR  GTRT Y GSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  417  TFVSLVDSDCAPHDESIRYLSVDTLCTNRDLVLLLPAGDANAFTLRVSAPVERIAAIRGP  476
             F+SLVD + AP  E++R ++V ++ TNRDL  L+P  + + +T+  + PV  ++ IR P
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  477  SRPRPPIADAQTAWRLVSHLGLARHTLTDVDDEEGARVLRELLGLHADPADAAMRRQIDG  536
              P+PP+A+ + AWRL+ +L++    L+D+D+  G++ LR+LL L   + D++  RQ+ +
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  537  VHRVAFTPVFRRLPAAGPLMFGRGVQVDVTVDDHAFSGDSPYLLGAVLEQFFARHVSINS  596
            +     TPV RRLP++G L++GRGV  ++TVD+++FSG SPYL+G VLE+++ARHVSIN+
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  597  FAECVLSSAQRGRLAQWPTRVGRRPAI  623
            F++  L S QRG++  WP R G+R ++
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

117) BTH_II0262 in NC_007650


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  450 bits (1695),  Expect = 1e-127, Method: Compositional matrix adjust.
 Identities = 277/627 (45%), Positives = 437/627 (70%), Gaps = 4/627 (0%)

Query  1    MDTRLLDYYNRELAYLRELGGEFAQQFPKVAARLRMHESGPPDPYVERLLEGFSFLTARV  60
            MD RLL+YYNREL+YLRE G+EFA   PK+AARL M+ ++ +DPYVER++E+FSFL+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFTQALLDAVYPGYVAPVPSMAIMQFTPMMNEGSLAQGYRLPAGTALRARP  120
            QLK+DAEFPRFTQ LL+ V P YV+P PSMA++++ P  +EG LA+G  +P +TA+ +  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  AASEQTACEFRTAHDLTLWPLELTAASVTGAPAYLP--RSATAARRDVRGALRIRLKACG  178
            + +E+TAC+FR+++D+TLWPL +    +T+AP+ +P  +   ++  +V GALRI L++ G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  GASLAKLP-IERLMFHLAGPERDALHLLELIAGHTIGVVCHDAAQPPRWLHALGADALAH  237
              +++ L+   RL F L G ER A HL+EL+   +++ +  ++++    L+    +++AH
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  238  QGFDAAQALLPDDGRSFQGYRLLREYFAFPARFLFFSIEGLRPALARATGDTFELTLLLD  297
            +G++++Q+LLP     F+G  LL+E+FA P RF FF+  GL ++L +  G+  E+ +LL+
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  298  RHDAA-LENSVDARHVALNCTPAVNLFARRGDRIPVHPGAREHHVVVDRSRPLDYEVYAV  356
            R  +  L +  DA + +L CTP +NLF+R   RI V  +  E+H+VVDR+RPLDYEV++V
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  357  RRLAGEPRDDAQAREFRPFHASFAGDDGNYGAYYTVRREPRLVSARARANGTRTGYVGSE  416
            + + G   + ++   FRP+  +   D+GN G Y+++RREPR  S  AR  GTRT Y GSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  417  TFVSLVDSECAPYDESIRYLSADTLCTNRDLVLLLPAGDANAFTLRVSAPVERIAAIRGP  476
             F+SLVD + APY E++R ++  ++ TNRDL  L+P  + + +T+  + PV  ++ IR P
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  477  SRPRAPIADAQTAWRLVSHLGLARQTLTDVDDEEGARVLRELLGLHADPADAAMRRQIDG  536
              P++P+A+ + AWRL+ +L++    L+D+D+  G++ LR+LL L   + D++  RQ+ +
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  537  VHRVAFTPVFRRLPAAGPLMFGRGVQVDVTVDDHAFSGDSPYLLGAVLEQFFARHVSINS  596
            +     TPV RRLP++G L++GRGV  ++TVD+++FSG SPYL+G VLE+++ARHVSIN+
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  597  FAECVLSSAQRGRLAQWPARVGRRPAI  623
            F++  L S QRG++  WP R G+R ++
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

118) Fraau_1788 in NC_017033


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  450 bits (1696),  Expect = 1e-127, Method: Compositional matrix adjust.
 Identities = 269/629 (43%), Positives = 438/629 (70%), Gaps = 11/629 (1%)

Query  1    MDSRLLDYYNRELTYFREMGAEFAREYPKVAGRLGLRGTEVPDPYVERLLEGVSFLTARI  60
            MD+RLL+YYNREL+Y+RE GAEFA   PK+A+RLG++GT+++DPYVER++E+ SFL+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFSQRLLDIVCPHYLAPTPAMGIVQIEPGYREGSLLQGYVLPAGTSLRAHL  120
            QLK+DAEFPRF+QRLL++V P+Y++PTP+M++V++ P+ +EG L +G  +P +T++ + +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  SRGEQTACEFRTAHEVQLWPLKLQVLGGEAELADLSLASWPLPAEVR--SVLRLRLDGVG  178
            + GE+TAC+FR++++V LWPL ++ +   A  +D++   + LP++++  + LR+ L   G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  VSQLRSLP-LKKLSFHLCGEERHALMLLEQILAHGIGVVarapda--raarllpaSVIRP  235
               +  L+   +L+F LCGEER A  L+E + + +++ +A  P+       +     +  
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  236  CGMDPEQALLPCDRRVFQGYRLLHEYFAFPARFLFFDIEQMERALIDIEGPSLELDILFD  295
             G++P Q+LLP  + VF+G  LLHE+FA P RF FF    +  +L  ++G   E+ IL++
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  296  R---SWPDVESAVGPDSLALYCTPVVNLFEKRSDRIAVSSQRYEQHLVIDRTRPMDYEIY  352
            R    W  +    ++  ++L+CTPV+NLF + + RI V+    EQHLV+DRTRP+DYE++
Sbjct  301  RLPPDW--LIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVF  358

Query  353  SVNKVVGHRREGGEELSFRPFY-GNVSGDPALAAYFSTRREPRLVPEQKSRGGSRTGYLG  411
            SV+ V G   E    + FRP+Y    +++   + YFS RREPR  +E   R G+RT Y G
Sbjct  359  SVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTG  418

Query  412  SEVFLSLVDQNEAPYPDDLRTVAIEALCTNRDLPLLLPLQEASDFSLRVSAPAGRIKLLR  471
            SEVFLSLVDQ+EAPYP++LR +++ A+ TNRDLP L+P +   D+++  + P + + L+R
Sbjct  419  SEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIR  478

Query  472  GPTPPRAAVVEGEATWRLISHLNINYLSLTDLDGESGAQAMRELLQLYAGLAGPALQQQI  531
             P PP++++ E E +WRLI +L++NYL+L+DLD  +G+QA+R+LL+L+    +++  +Q+
Sbjct  479  PPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQV  538

Query  532  KGIRSMRVEPTHQQLPQPGPIVFGRGVKVTMRLDLTAFSGTGVYLFGAVMEQFLARHVSI  591
            +++ + +  P  ++LP +G +V+GRGV   + +D  +FSG + YLFG V+E+++ARHVSI
Sbjct  539  RSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSI  598

Query  592  NSFVELQLLILQTGEVLRWAPRIGRRPSV  620
            N+F ++ L  +Q G+V+ W+ R G+R SV
Sbjct  599  NTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

119) Daci_3859 in NC_010002


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  447 bits (1683),  Expect = 1e-126, Method: Compositional matrix adjust.
 Identities = 273/628 (44%), Positives = 441/628 (71%), Gaps = 5/628 (0%)

Query  1    MNPRLVEYYNRELAYLRELGAEFAAAFPKVAGRLSLHDTDVADPYVERLLEGFSFLSARI  60
            M+PRL+EYYNREL+YLRE GAEFA+  PK+A+RL++++TD+ADPYVER++E+FSFLSAR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRLSQRMMEMVCPHYLAPTPSMVVVQLKPSAKEGNLVDGFTLPSGSVLRTHK  120
            QLK+DAEFPR++QR++E+V P+Y++PTPSM VV+L P ++EG+L  G T+P ++ + +  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  SQEEQTICEFRTGGPLTLWPLEIRQARLGGPALDLP--HALVPQLGEAGGHLRLQLATLD  178
            ++ E+T C+FR++  +TLWPL I + RL +++ D+P  H  +P   + +G LR+ L T++
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  ASQCMQLA-MDQLWVYIHAGDVVASHLQELIHTQTLAIVVHHPQDPRQVWDVLQPDALRA  237
                 +LA   +L  Y+ + + +ASHL EL+HT ++A +  +P +     +V   +++  
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  238  EGHDSEQALIPYSHRAFQGHRLLHEYFAFPARQRFFSINGLSRSMRRIAHDGVGITVLLR  297
            EG ++ Q+L+P +   F+GH LLHE+FA P R  FF+  GLS +++++  +   I +LL 
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  298  RAAPT-LEPQIDAAKLLMHCIPAINLFEYTADRLHVASNVHEYHVIPDRTRPLDFEVYGV  356
            R +P  L  Q DAA++ + C P INLF  T+ R++V+ +V E H++ DRTRPLD+EV++V
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  357  QAVTGHHEGKTQDREFAPLYASTHGLHSTEQAYFTTRREPRLFSERSLRSGPRTQYLGSE  416
            Q V G +   T+   F PLY + +  ++ +  YF+ RREPR  SE + R G RT Y GSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  417  VFISLVDQREAPFSDDLKQLSMHTLCTNRDLPLLMRVNQPGGDFALQESAPVEWARAIAG  476
            VF+SLVDQ+EAP++++L+++++ ++ TNRDLP L+  N   +D++++ + PV     I  
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGR-DDLTVDAAIPVAGVGLIRP  479

Query  477  PSAPIPAVADGGLTWRLISHLSLNYLAMTDLSDEEGAATLQELLRLYLDLGNHQLAGQIA  536
            P +P P++A+  ++WRLI +LS+NYL+++DL +  G+ +L++LL L++   +   + Q+ 
Sbjct  480  PRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVR  539

Query  537  AIQGMRIEPITRRLPQHRQLVYGRGVGVHLSVDEPAMAGVSPWPLSNVLERFFARHVGVN  596
            ++ G +  P+TRRLP    LVYGRGV+ +L+VDE + +G+SP  ++ VLE+++ARHV++N
Sbjct  540  SLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSIN  599

Query  597  SFTELQLHSRQRGPVARWTPRPGQRPGI  624
            +F+++ LHS QRG V  W  R GQR ++
Sbjct  600  TFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

120) DelCs14_2965 in NC_015563


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  447 bits (1683),  Expect = 1e-126, Method: Compositional matrix adjust.
 Identities = 273/628 (44%), Positives = 441/628 (71%), Gaps = 5/628 (0%)

Query  1    MNPRLVEYYNRELAYLRELGAEFAAAFPKVAGRLSLHDTDVADPYVERLLEGFSFLSARI  60
            M+PRL+EYYNREL+YLRE GAEFA+  PK+A+RL++++TD+ADPYVER++E+FSFLSAR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRLSQRMMEMVCPHYLAPTPSMVVVQLKPSAKEGNLVDGFTLPSGSVLRTHK  120
            QLK+DAEFPR++QR++E+V P+Y++PTPSM VV+L P ++EG+L  G T+P ++ + +  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  SQEEQTICEFRTGGPLTLWPLEIRQARLGGPALDLP--HALVPQLGEAGGHLRLQLATLD  178
            ++ E+T C+FR++  +TLWPL I + RL +++ D+P  H  +P   + +G LR+ L T++
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  ASQCMQLA-MDQLWVYIHAGDVVASHLQELIHTQTLAIVVHHPQDPRQVWDVLQPDALRA  237
                 +LA   +L  Y+ + + +ASHL EL+HT ++A +  +P +     +V   +++  
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  238  EGHDSEQALIPYSHRAFQGHRLLHEYFAFPARQRFFSINGLSRSMRRIAHDGVGITVLLR  297
            EG ++ Q+L+P +   F+GH LLHE+FA P R  FF+  GLS +++++  +   I +LL 
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  298  RAAPT-LEPQIDAAKLLMHCIPAINLFEYTADRLHVASNVHEYHVIPDRTRPLDFEVYGV  356
            R +P  L  Q DAA++ + C P INLF  T+ R++V+ +V E H++ DRTRPLD+EV++V
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  357  QAVTGHHEGKTQDREFAPLYASTHGLHSTEQAYFTTRREPRLFSERSLRSGPRTQYLGSE  416
            Q V G +   T+   F PLY + +  ++ +  YF+ RREPR  SE + R G RT Y GSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  417  VFISLVDQREAPFSDDLKQLSMHTLCTNRDLPLLMRVNQPGGDFALQESAPVEWARAIAG  476
            VF+SLVDQ+EAP++++L+++++ ++ TNRDLP L+  N   +D++++ + PV     I  
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGR-DDLTVDAAIPVAGVGLIRP  479

Query  477  PSAPIPAVADGGLTWRLISHLSLNYLAMTDLSDEEGAATLQELLRLYLDLGNHQLAGQIA  536
            P +P P++A+  ++WRLI +LS+NYL+++DL +  G+ +L++LL L++   +   + Q+ 
Sbjct  480  PRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVR  539

Query  537  AIQGMRIEPITRRLPQHRQLVYGRGVGVHLSVDEPAMAGVSPWPLSNVLERFFARHVGVN  596
            ++ G +  P+TRRLP    LVYGRGV+ +L+VDE + +G+SP  ++ VLE+++ARHV++N
Sbjct  540  SLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSIN  599

Query  597  SFTELQLHSRQRGPVARWTPRPGQRPGI  624
            +F+++ LHS QRG V  W  R GQR ++
Sbjct  600  TFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

121) XBJ1_2098 in NC_013892


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  442 bits (1664),  Expect = 4e-125, Method: Compositional matrix adjust.
 Identities = 276/629 (44%), Positives = 421/629 (67%), Gaps = 13/629 (2%)

Query  1    MDSKLLEYYNRELVYLREMGKEFAERYPKIANRLGMHGIDIADPYVERLIEGFAFLTSRI  60
            MD++LLEYYNREL YLRE G EFA   PKIA RLGM+G DIADPYVER+IE+F+FL++R 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFQHFSQHLLEMLYPNYLAPTPSMAITELQPDMSKGDISHGFLVPHGSIMRCQS  120
            QLK+DAEF +F+Q+LLE++ PNY++PTPSMA+  L PD   GD++ G  VP+++      
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  LENDGITLQYSTTQDVILQPLKLQKVELGKIPANFPLVGLNLHHY-----GAVSALRIRL  175
             E +  + Q+ ++QDV L PL ++ V L   P++ P     LH+Y        +ALRI L
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMP----ALHRYLPPNIHVAGALRITL  176

Query  176  ACKGKLFLHDL-DLNKLTFFLSGPDIQSQKLLELIMEHSVGMVCQTQGASPQYLTLP-DI  233
               G L + +L +  +L F+L G +  +  L+EL+   +V+ +    G     L +  + 
Sbjct  177  RTFGELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQH  236

Query  234  APHHEGFDDEQALLPNDPRNFSGYRQVQEYFAFPARFRFFSICGMQPLLKETKEDVEFEL  293
            +  HEG++  Q+LLP     F G   ++E+FA P RF FF+  G+ + L+  + +V  E+
Sbjct  237  PVAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVA-EI  295

Query  294  ILLLNK-TDSRLESLIDISYLALNCTPVINLFPKMTERLTVDESTNEYHLVVDNTRPLDY  352
            ++LLN+    +L    D + ++L CTPVINLFP+ T R+ V +S  E HLVVD TRPLDY
Sbjct  296  VILLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDY  355

Query  353  EIFSVQRLLGIDAQHKQERIFRPFWSTNSDDPDNYGAYFSLRREPRILSEHAHHYGTRTS  412
            E+FSVQ + G++A+  +  IFRP+  T ++D +N G YFSLRREPR  SE A++YGTRT+
Sbjct  356  EVFSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTP  415

Query  413  YIGTETFISIVDEHHSPWPDTLRYLSADVMCTNRDLPAMLRQKDINSFAMLDSIPISKIE  472
            Y G+E F+S+VD+H++P P+ LR ++   M TNRDLP ++ +++ + +++  +IP++ + 
Sbjct  416  YTGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVG  475

Query  473  FIKRPTIPRPALAEGAVSWKLISQLQINYMNFMDQNQEEGTQTLRQLLSLYADLAEPAVV  532
            +I+ P  P+P+LAE  ++W+LI QL +NY+ + D ++  G Q+LR+LL+L+    +++  
Sbjct  476  LIRPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQS  535

Query  533  RQINGIRHCSLKEVYRRVPDTGLIVFARGVSIKLEVDEQEFAGASPWLLGSVLEKLFSRL  592
            RQ+ ++  C    V RR+P++GL+V++RGVS  L VDE+ F+G SP L+G VLE  ++R 
Sbjct  536  RQVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARH  595

Query  593  VTINAFTEMTLYSQQRGQVGFWPARMGSK  621
            V+IN+F++MTL S QRG+V  WP R G +
Sbjct  596  VSINTFSQMTLHSMQRGHVMTWPVRTGQR  624

122) Pat9b_2505 in NC_014837


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  438 bits (1650),  Expect = 5e-124, Method: Compositional matrix adjust.
 Identities = 278/628 (45%), Positives = 434/628 (70%), Gaps = 9/628 (1%)

Query  1    MDSKLLDYYNRELAYLREMGAEFAERYPKVAGRLGMRGIEIADPYVERLMEGFAFLTSRV  60
            MD++LL+YYNREL+YLRE GAEFA   PK+A+RLGM+G +IADPYVER++E+F+FL++R 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFSQRLLEMIAPGYLAPTPSMAIAQLTPDSRKGDISNGFLVPRGTMMESQS  120
            QLK+DAEFPRF+QRLLE++ P Y++PTPSMA+ +L PD++ GD+++G  VPR+T   S  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  LKKSGVTCSYTTAHDVMLHPLRISDVTLGGVPGDIP-LGELKLSGLGATSALRLRIECEG  179
                  +C + +++DV L PL I +V L + P D+P L     + +  ++ALR+ +   G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  180  VSSLSQLTVDE-LMLYLSGPDIQALRLLELLMQHRVGIVLQSVEP---QPQRQVLADNAL  235
              ++S+L+    L +YL G +  A +L+ELL  H  ++   + EP   + + +V  ++++
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELL--HTSAVATLAGEPGHFDGELNVNLQHPV  238

Query  236  QQQGFAPEQALLPDDLRNFDGYRLLQEYFAFPARFQFISLHQLAALLRRCEHAKAFDIII  295
             ++G+ P Q+LLP     F+G  LL+E+FA P RF F++   L+A L++  +++  +I+I
Sbjct  239  AHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKV-QGNVAEIVI  297

Query  296  LLDKADAE-LESVVDRSHLALHCTPVINLFPKMAERLKVSDSQHEYHLVVDNIRPLDYEV  354
            LL++  ++ L    D ++++L CTPVINLFP+ + R+ V++S  E HLVVD  RPLDYEV
Sbjct  298  LLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEV  357

Query  355  HSVQRLFATVQGQREEQVFRPFWSTFSADNGDYGAYFSLRREQRTLSEHAQRYGTRTGYI  414
             SVQ + +         +FRP+  T + D+G+ G YFSLRRE R  SE A+RYGTRT Y 
Sbjct  358  FSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYT  417

Query  415  GSEVFLSLVDEHHTPWRDDMRYLSAEVMCTSRDLPLMLLQQEQGQFVMPDSIPVSQLTLC  474
            GSEVFLSLVD+H++P  +++R ++   M T+RDLP ++ ++ ++++ +  +IPV+ + L 
Sbjct  418  GSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLI  477

Query  475  KGPTPPRPALAEGLSSWRLISHLQMNYLSLMDSADGEGAAALRQLLSLYANLAEAPVARQ  534
            + P PP+P+LAE   +WRLI +L  NYL+L D  +  G+ ALR+LL+L+    ++P +RQ
Sbjct  478  RPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQ  537

Query  535  IEGIRHCQLRAVHRRVPEPGPVVFARGVSIALEVDEQVFSGASPWLFGSVLERVFSRLVA  594
            + ++  C+  +V RR+P +G +V++RGVS  L VDE+ FSG SP LFG VLE+ ++R V+
Sbjct  538  VRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVS  597

Query  595  LNSFTELTLSSQQRGEVGYWPPRMGQKA  622
            +N+F+++TL S QRG+V  WP R GQ++
Sbjct  598  INTFSQMTLHSMQRGHVMTWPVRTGQRG  625

123) tssF-6 in NC_017832


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  437 bits (1646),  Expect = 1e-123, Method: Compositional matrix adjust.
 Identities = 282/627 (45%), Positives = 441/627 (71%), Gaps = 4/627 (0%)

Query  1    MDTRLLDYYNRELAYLRELGGEFAQQFPKVAARLRMHESGPPDPYVERLLEGFSFLTARV  60
            MD RLL+YYNREL+YLRE G+EFA   PK+AARL M+ ++ +DPYVER++E+FSFL+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFTQALLDAVYPGYVAPLPSMAIVQFTPMMNEGSLAQGYRlpagtalrarp  120
            QLK+DAEFPRFTQ LL+ V P YV+P PSMA+V++ P  +EG LA+G  +P +TA+ +  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  aaaeqtaCEFRTAHDLTLWPLELADASVTGAPAYLP--RSATAARRDVRGALRIRLKARG  178
            + +E+TAC+FR+++D+TLWPL + +  +T+AP+ +P  +   ++  +V GALRI L++ G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  GAGLAQLP-IDRLMFHLAGPERDALHLLELIAGHTIGVVCHDAAQPPRWlhalgahalah  237
              ++++L+   RL F L G ER A HL+EL+   +++ +  ++++    L+    H++AH
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  238  QGFDADQALLPDEGRSFHGYRLLREYFAFPARFLFFSIEGLRPALARATGDTFELTLLLD  297
            +G++++Q+LLP     FHG  LL+E+FA P RF FF+  GL ++L +  G+  E+ +LL+
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  298  RHDAA-LENSVDARHLALNCTPAVNLFARRADRIPVHPGAREHHVVVDRSRPLDYEVYAV  356
            R  +  L +  DA +++L CTP +NLF+R + RI V  +  E+H+VVDR+RPLDYEV++V
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  357  RRLAGEQRDDGQMRAFRPFHASFAGDGGNYGAYYTVRREPRLVSAQARANGTRTGYVGSE  416
            + + G + +  +   FRP+  +   D GN G Y+++RREPR  S  AR  GTRT Y GSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  417  TFVSLVDSACAPYDESIRYLSVDTLCTNRDLVLLLPAGDANAFTLRVSAPVERIAMIRGP  476
             F+SLVD   APY E++R ++V ++ TNRDL  L+P  + + +T+  + PV  +++IR P
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  477  SRPRPPLADAQSAWRLVSHLGLARHTLTDVDDEEGARVLRELLGLHADPADAAMRRQIDG  536
              P+PPLA+ + AWRL+ +L++    L+D+D+  G++ LR+LL L   + D++  RQ+ +
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  537  VHRVAFAPVFRRLPAAGPLMFGRGVQVDVTVDDHAFSGDSPYLLGAVLEQFFARHVSINS  596
            +     +PV RRLP++G L++GRGV  ++TVD+++FSG SPYL+G VLE+++ARHVSIN+
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  597  FAECVLSSAQRGRLAQWPARVGRRPAI  623
            F++  L S QRG++  WP R G+R ++
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

124) EAE_19360 in NC_015663


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  437 bits (1645),  Expect = 1e-123, Method: Compositional matrix adjust.
 Identities = 284/633 (45%), Positives = 433/633 (69%), Gaps = 16/633 (2%)

Query  1    MEGKLLEYYNRELAYLREMGAEFAERYPKVAGRLGMRGIEVADPYVERMMEGFAFLTSRV  60
            M+ +LLEYYNREL+YLRE GAEFA   PK+A+RLGM+G ++ADPYVERM+E+F+FL++R 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFSQRLLEMIAPNYLAPTPSMAIAELQPDINKGDLSKGFVVPRGTMMDSQV  120
            QLK+DAEFPRF+QRLLE++ PNY++PTPSMA+  L PD + GDL+KG  VPR+T   S +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  LKKNGVTCSYTTAHDVTLLPLRIEKAELGGIPADVPLAALGLSQRGAVSALRLRISCEGA  180
               +  +C + +++DVTL PL IE   L + P+D+P     L+    V++  LRI+    
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAG-ALRIT---L  176

Query  181  QHLGHLTFD------RLAFFLSGPDiealrllelilaHQVGVVCQTTGR--DPLRFSLSE  232
            + +G+L+F       RL+F+L G +  A +L+EL+ +  V+ +    G+  + L  +L +
Sbjct  177  RTFGELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNL-Q  235

Query  233  EAIQQEGFAANQALLPEDLRNFDGYRLLHEYFAFPARFRFISINGLSKLIGQCKEEKSFD  292
            +++ +EG+ + Q+LLP     F+G  LLHE+FA P RF F++  GLS  + + + + + +
Sbjct  236  HPVAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVA-E  294

Query  293  IIILLDK-TDDRLEQVVEANHFALHCTPVINLFPKIAARQSLSDSQHEYHLVVDNIRPLD  351
            I+ILL++   D+L +  +A +F+L CTPVINLFP+ ++R  +++S  E HLVVD  RPLD
Sbjct  295  IVILLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLD  354

Query  352  YEIYSVSKIHGSADGHRDDREFRPFWSSWSKDAGDYGAYFSLRREQRVLSEHALRYGTRT  411
            YE++SV  ++G          FRP+  ++++D G+ G YFSLRRE R  SE A RYGTRT
Sbjct  355  YEVFSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRT  414

Query  412  GYTGSETFVSLVDEQHAPWQEDLRYITAEVLCTSRDLP-LMLQQELGQFVLADSLPVKTL  470
             YTGSE F+SLVD+++AP  E+LR IT   + T+RDLP L+ ++  +++ +  ++PV  +
Sbjct  415  PYTGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGV  474

Query  471  KMRSGPTPPRPALAEGLSTWRLISQLQMNYLSLMDGENGEGAAALRQLLGLYAGLAETAV  530
             +   P PP+P+LAE   +WRLI QL  NYL+L D ++  G+ ALR+LL L+    +++ 
Sbjct  475  GLIRPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQ  534

Query  531  ARQIEGVRHCVLEPVHRRVPEPGPIVFARGIGITLTVDERAFSGASPWLFGSVLERVFAR  590
            +RQ+ ++  C   PV RR+P +G +V++RG++  LTVDE +FSG SP LFG VLE+ +AR
Sbjct  535  SRQVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIAR  594

Query  591  LVSLNSFTEFTLCSQQRGEIGYWAPRMGKRALI  623
             VS+N+F++ TL S QRG++  W+ R G+R+ +
Sbjct  595  HVSINTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

125) ECENHK_13150 in NC_018405


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  437 bits (1646),  Expect = 1e-123, Method: Compositional matrix adjust.
 Identities = 280/635 (45%), Positives = 436/635 (69%), Gaps = 20/635 (3%)

Query  1    MESKLLEYYNRELAYLREMGAEFAERYPKVAGRLGMRGIEVADPYTERLMEGFAFLTSRV  60
            M+++LLEYYNREL+YLRE GAEFA   PK+A+RLGM+G ++ADPY ER++E+F+FL++R 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QMKMDAEFPRFSQRLLEMIAPNYLAPTPSMAIAQIEPDSSRGDLSNGFIVPRGTMMDSLA  120
            Q+K+DAEFPRF+QRLLE++ PNY++PTPSMA+ ++ PD+  GDL++G  VPR+T   S  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  LKKTGVTCSYTTAHEVNLLPLKIDNVELGGVPADLPLAQLGLSQR-GINSALRIRIACDG  179
                  +C + ++++V L PL I++V L + P+D+P  +  L+    + +ALRI +    
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITL----  176

Query  180  PQNLGHLNFDQLT------FFLSGPDIEALKLLELVMEHHAGIVCQTVSP---QPQRQLL  230
             + +G+L F +L+      F+L G +  A  L+EL+  H +++   +  P   + + ++ 
Sbjct  177  -RTFGELAFSELAGPARLPFYLCGEERIASHLFELL--HTSAVATLAGEPGHFDGELNVN  233

Query  231  ASDALCQEGFAADQALLPDDLRNFDGYRLLQEYFAFPARFRFISLSGLSTLLQRCEGEKA  290
              +++ +EG+ ++Q+LLP     F+G  LL+E+FA P RF F++ +GLS+ LQ+ +G+ A
Sbjct  234  LQHPVAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVA  293

Query  291  FDIFILLDKSDEQ-LERVVDASHLALHCTPVINLFPKVAARQKLNEGQHEYHLVVDNIRP  349
             +I ILL++   + L +  DA++++L CTPVINLFP+ ++R  + ++  E HLVVD  RP
Sbjct  294  -EIVILLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRP  352

Query  350  LDYEIYAVNKIFGSADGQRDDQTFRPFWSTWSGDAGNYGAYFSLRREQRVLSEHAQRYGT  409
            LDYE+++V+ + G          FRP+  T++ D GN G YFSLRRE R  SE A+RYGT
Sbjct  353  LDYEVFSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGT  412

Query  410  RTGYIGSEVFVSLVDEQHAPWQENLRYISAEVLCTSRDLP-LMLQQELGQFIMADSMPVK  468
            RT Y GSEVF+SLVD+++AP  ENLR I+   + T+RDLP L+ ++  +++ +  ++PV 
Sbjct  413  RTPYTGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVA  472

Query  469  SLTLRKGPTPPRPALAEGFSTWRLISQLQMNYLSLMDSENEEGAAALRQLLGLYANLAET  528
            ++ L + P PP+P+LAE   +WRLI QL  NYL+L D ++  G+ ALR+LL L+    ++
Sbjct  473  GVGLIRPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDS  532

Query  529  AVARQVEGVRHCVLEPVHRRVPEPGPVVFARGIGITLTVDERAFSGASPWLFGSVLERLF  588
            + +RQV ++  C   PV RR+P +G +V++RG++  LTVDE +FSG SP LFG VLE+ +
Sbjct  533  PQSRQVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYI  592

Query  589  ARLVSINSFTEFTLKSQQRGEIGYWAPRMGKRALV  623
            AR VSIN+F++ TL S QRG++  W+ R G+R+ V
Sbjct  593  ARHVSINTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

126) A3UG_13405 in NC_018079


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  437 bits (1644),  Expect = 1e-123, Method: Compositional matrix adjust.
 Identities = 278/633 (44%), Positives = 430/633 (68%), Gaps = 16/633 (2%)

Query  1    MESKLLEYYNRELAYLREMGAEFAERYPKVAGRLGMRGIEVADPYTERLMEGFAFLTSRV  60
            M+++LLEYYNREL+YLRE GAEFA   PK+A+RLGM+G ++ADPY ER++E+F+FL++R 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QMKMDAEFPRFSQRLLEMIAPNYLAPTPSMAIAEIQPDSSRGDLSNGFIVPRGTMMDSLA  120
            Q+K+DAEFPRF+QRLLE++ PNY++PTPSMA+  + PD+  GDL++G  VPR+T   S  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  LKKTGVTCSYTTAHEVNLLPLKIDKVELGGVPADLPltql-glgqqgISSALRIRIACDG  179
                  +C + ++++V L PL I+ V L + P+D+P  +     +  +++ALRI +    
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITL----  176

Query  180  PQNLGHLDFD------RLEFFLSGPDIEALKLLELVMEHHVGVVCQTVSK-HPQRDVLAS  232
             + +G+L F       RL F+L G +  A  L+EL+    V+ +    +  + + +V   
Sbjct  177  -RTFGELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQ  235

Query  233  DALRQEGFDADQSLLPDDLRNFDGYRLLQEYFAFPARFRFISLSGLSKLIQRCENEKSFD  292
            +++ +EG++++Q+LLP     F+G  LL+E+FA P RF F++ +GLS  +Q+ + + + +
Sbjct  236  HPVAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVA-E  294

Query  293  IFILLDKTDEQ-LERVVDASHLALHCTPVINLFPKVAARQKLSEGQHEYHLVVDNIRPLD  351
            I ILL++   + L +  DA++++L CTPVINLFP+ ++R  ++++  E HLVVD  RPLD
Sbjct  295  IVILLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLD  354

Query  352  YEIYAVNKIYGSADGQRDDQTFRPFWSTWSGDAGNYGAYFSLRREQRVLSEHALRYGTRT  411
            YE+++V+ + G          FRP+  T++ D GN G YFSLRRE R  SE A RYGTRT
Sbjct  355  YEVFSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRT  414

Query  412  GYIGSEVFVSLVDEQHAPWQENLRYISAEVLCTSRDLP-LMLQQELGQFIMADSMPVKSL  470
             Y GSEVF+SLVD+++AP  ENLR I+   + T+RDLP L+ ++  +++ +  ++PV ++
Sbjct  415  PYTGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGV  474

Query  471  TLRKGPTPPRPALAEGFSTWRLISQLQMNYLSLMDSENEDGAAALRQLLGLYANLAETPV  530
             L + P PP+P+LAE   +WRLI QL  NYL+L D ++  G+ ALR+LL L+    ++P 
Sbjct  475  GLIRPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQ  534

Query  531  ARQVEGVRHCVLEPVHRRVPEPGPVVFARGIGITLTVDERAFSGASPWLFGSVLERLFAR  590
            +RQV ++  C   PV RR+P +G +V++RG++  LTVDE +FSG SP LFG VLE+ +AR
Sbjct  535  SRQVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIAR  594

Query  591  LVSINSFTEFTLKSQQRGEIGYWAPRMGKRALV  623
             VSIN+F++ TL S QRG++  W+ R G+R+ V
Sbjct  595  HVSINTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

127) BMAA0407 in NC_006349


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  437 bits (1647),  Expect = 8e-124, Method: Compositional matrix adjust.
 Identities = 282/627 (45%), Positives = 441/627 (71%), Gaps = 4/627 (0%)

Query  1    MDTRLLDYYNRELAYLRELGGEFAQQFPKVAARLRMHESGPPDPYVERLLEGFSFLTARV  60
            MD RLL+YYNREL+YLRE G+EFA   PK+AARL M+ ++ +DPYVER++E+FSFL+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFTQALLDAVYPGYVAPLPSMAIVQFTPMMNEGSLAQGYRlpagtalrarp  120
            QLK+DAEFPRFTQ LL+ V P YV+P PSMA+V++ P  +EG LA+G  +P +TA+ +  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  aaaeqtaCEFRTAHDLTLWPLELADASVTGAPAYLP--RSATAARRDVRGALRIRLKARG  178
            + +E+TAC+FR+++D+TLWPL + +  +T+AP+ +P  +   ++  +V GALRI L++ G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  GAGLAQLP-IDRLMFHLAGPERDALHLLELIAGHTIGVVCHDAAQPPRWlhalgahalah  237
              ++++L+   RL F L G ER A HL+EL+   +++ +  ++++    L+    H++AH
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  238  QGFDADQALLPDEGRSFHGYRLLREYFAFPARFLFFSIEGLRPALARATGDTFELTLLLD  297
            +G++++Q+LLP     FHG  LL+E+FA P RF FF+  GL ++L +  G+  E+ +LL+
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  298  RHDAA-LENSVDARHLALNCTPAVNLFARRADRIPVHPGAREHHVVVDRSRPLDYEVYAV  356
            R  +  L +  DA +++L CTP +NLF+R + RI V  +  E+H+VVDR+RPLDYEV++V
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  357  RRLAGEQRDDGQTRAFRPFHASFAGDGGNYGAYYTVRREPRLVSAQARANGTRTGYVGSE  416
            + + G + +  +   FRP+  +   D GN G Y+++RREPR  S  AR  GTRT Y GSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  417  TFVSLVDSACAPYDESIRYLSVDTLCTNRDLVLLLPAGDANAFTLRVSAPVERIAMIRGP  476
             F+SLVD   APY E++R ++V ++ TNRDL  L+P  + + +T+  + PV  +++IR P
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  477  SRPRPPLADAQSAWRLVSHLGLARHTLTDVDDEEGARVLRELLGLHADPADAAMRRQIDG  536
              P+PPLA+ + AWRL+ +L++    L+D+D+  G++ LR+LL L   + D++  RQ+ +
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  537  VHRVAFAPVFRRLPAAGPLMFGRGVQVDVTVDDHAFSGDSPYLLGAVLEQFFARHVSINS  596
            +     +PV RRLP++G L++GRGV  ++TVD+++FSG SPYL+G VLE+++ARHVSIN+
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  597  FAECVLSSAQRGRLAQWPARVGRRPAI  623
            F++  L S QRG++  WP R G+R ++
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

128) BMA10229_1787 in NC_008835


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  437 bits (1647),  Expect = 8e-124, Method: Compositional matrix adjust.
 Identities = 282/627 (45%), Positives = 441/627 (71%), Gaps = 4/627 (0%)

Query  1    MDTRLLDYYNRELAYLRELGGEFAQQFPKVAARLRMHESGPPDPYVERLLEGFSFLTARV  60
            MD RLL+YYNREL+YLRE G+EFA   PK+AARL M+ ++ +DPYVER++E+FSFL+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFTQALLDAVYPGYVAPLPSMAIVQFTPMMNEGSLAQGYRlpagtalrarp  120
            QLK+DAEFPRFTQ LL+ V P YV+P PSMA+V++ P  +EG LA+G  +P +TA+ +  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  aaaeqtaCEFRTAHDLTLWPLELADASVTGAPAYLP--RSATAARRDVRGALRIRLKARG  178
            + +E+TAC+FR+++D+TLWPL + +  +T+AP+ +P  +   ++  +V GALRI L++ G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  GAGLAQLP-IDRLMFHLAGPERDALHLLELIAGHTIGVVCHDAAQPPRWlhalgahalah  237
              ++++L+   RL F L G ER A HL+EL+   +++ +  ++++    L+    H++AH
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  238  QGFDADQALLPDEGRSFHGYRLLREYFAFPARFLFFSIEGLRPALARATGDTFELTLLLD  297
            +G++++Q+LLP     FHG  LL+E+FA P RF FF+  GL ++L +  G+  E+ +LL+
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  298  RHDAA-LENSVDARHLALNCTPAVNLFARRADRIPVHPGAREHHVVVDRSRPLDYEVYAV  356
            R  +  L +  DA +++L CTP +NLF+R + RI V  +  E+H+VVDR+RPLDYEV++V
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  357  RRLAGEQRDDGQTRAFRPFHASFAGDGGNYGAYYTVRREPRLVSAQARANGTRTGYVGSE  416
            + + G + +  +   FRP+  +   D GN G Y+++RREPR  S  AR  GTRT Y GSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  417  TFVSLVDSACAPYDESIRYLSVDTLCTNRDLVLLLPAGDANAFTLRVSAPVERIAMIRGP  476
             F+SLVD   APY E++R ++V ++ TNRDL  L+P  + + +T+  + PV  +++IR P
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  477  SRPRPPLADAQSAWRLVSHLGLARHTLTDVDDEEGARVLRELLGLHADPADAAMRRQIDG  536
              P+PPLA+ + AWRL+ +L++    L+D+D+  G++ LR+LL L   + D++  RQ+ +
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  537  VHRVAFAPVFRRLPAAGPLMFGRGVQVDVTVDDHAFSGDSPYLLGAVLEQFFARHVSINS  596
            +     +PV RRLP++G L++GRGV  ++TVD+++FSG SPYL+G VLE+++ARHVSIN+
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  597  FAECVLSSAQRGRLAQWPARVGRRPAI  623
            F++  L S QRG++  WP R G+R ++
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

129) BMA10247_A0457 in NC_009079


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  437 bits (1647),  Expect = 8e-124, Method: Compositional matrix adjust.
 Identities = 282/627 (45%), Positives = 441/627 (71%), Gaps = 4/627 (0%)

Query  1    MDTRLLDYYNRELAYLRELGGEFAQQFPKVAARLRMHESGPPDPYVERLLEGFSFLTARV  60
            MD RLL+YYNREL+YLRE G+EFA   PK+AARL M+ ++ +DPYVER++E+FSFL+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFTQALLDAVYPGYVAPLPSMAIVQFTPMMNEGSLAQGYRlpagtalrarp  120
            QLK+DAEFPRFTQ LL+ V P YV+P PSMA+V++ P  +EG LA+G  +P +TA+ +  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  aaaeqtaCEFRTAHDLTLWPLELADASVTGAPAYLP--RSATAARRDVRGALRIRLKARG  178
            + +E+TAC+FR+++D+TLWPL + +  +T+AP+ +P  +   ++  +V GALRI L++ G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  GAGLAQLP-IDRLMFHLAGPERDALHLLELIAGHTIGVVCHDAAQPPRWlhalgahalah  237
              ++++L+   RL F L G ER A HL+EL+   +++ +  ++++    L+    H++AH
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  238  QGFDADQALLPDEGRSFHGYRLLREYFAFPARFLFFSIEGLRPALARATGDTFELTLLLD  297
            +G++++Q+LLP     FHG  LL+E+FA P RF FF+  GL ++L +  G+  E+ +LL+
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  298  RHDAA-LENSVDARHLALNCTPAVNLFARRADRIPVHPGAREHHVVVDRSRPLDYEVYAV  356
            R  +  L +  DA +++L CTP +NLF+R + RI V  +  E+H+VVDR+RPLDYEV++V
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  357  RRLAGEQRDDGQTRAFRPFHASFAGDGGNYGAYYTVRREPRLVSAQARANGTRTGYVGSE  416
            + + G + +  +   FRP+  +   D GN G Y+++RREPR  S  AR  GTRT Y GSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  417  TFVSLVDSACAPYDESIRYLSVDTLCTNRDLVLLLPAGDANAFTLRVSAPVERIAMIRGP  476
             F+SLVD   APY E++R ++V ++ TNRDL  L+P  + + +T+  + PV  +++IR P
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  477  SRPRPPLADAQSAWRLVSHLGLARHTLTDVDDEEGARVLRELLGLHADPADAAMRRQIDG  536
              P+PPLA+ + AWRL+ +L++    L+D+D+  G++ LR+LL L   + D++  RQ+ +
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  537  VHRVAFAPVFRRLPAAGPLMFGRGVQVDVTVDDHAFSGDSPYLLGAVLEQFFARHVSINS  596
            +     +PV RRLP++G L++GRGV  ++TVD+++FSG SPYL+G VLE+++ARHVSIN+
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  597  FAECVLSSAQRGRLAQWPARVGRRPAI  623
            F++  L S QRG++  WP R G+R ++
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

130) BMASAVP1_1604 in NC_008784


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  437 bits (1647),  Expect = 8e-124, Method: Compositional matrix adjust.
 Identities = 282/627 (45%), Positives = 441/627 (71%), Gaps = 4/627 (0%)

Query  1    MDTRLLDYYNRELAYLRELGGEFAQQFPKVAARLRMHESGPPDPYVERLLEGFSFLTARV  60
            MD RLL+YYNREL+YLRE G+EFA   PK+AARL M+ ++ +DPYVER++E+FSFL+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFTQALLDAVYPGYVAPLPSMAIVQFTPMMNEGSLAQGYRlpagtalrarp  120
            QLK+DAEFPRFTQ LL+ V P YV+P PSMA+V++ P  +EG LA+G  +P +TA+ +  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  aaaeqtaCEFRTAHDLTLWPLELADASVTGAPAYLP--RSATAARRDVRGALRIRLKARG  178
            + +E+TAC+FR+++D+TLWPL + +  +T+AP+ +P  +   ++  +V GALRI L++ G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  GAGLAQLP-IDRLMFHLAGPERDALHLLELIAGHTIGVVCHDAAQPPRWlhalgahalah  237
              ++++L+   RL F L G ER A HL+EL+   +++ +  ++++    L+    H++AH
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  238  QGFDADQALLPDEGRSFHGYRLLREYFAFPARFLFFSIEGLRPALARATGDTFELTLLLD  297
            +G++++Q+LLP     FHG  LL+E+FA P RF FF+  GL ++L +  G+  E+ +LL+
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  298  RHDAA-LENSVDARHLALNCTPAVNLFARRADRIPVHPGAREHHVVVDRSRPLDYEVYAV  356
            R  +  L +  DA +++L CTP +NLF+R + RI V  +  E+H+VVDR+RPLDYEV++V
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  357  RRLAGEQRDDGQTRAFRPFHASFAGDGGNYGAYYTVRREPRLVSAQARANGTRTGYVGSE  416
            + + G + +  +   FRP+  +   D GN G Y+++RREPR  S  AR  GTRT Y GSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  417  TFVSLVDSACAPYDESIRYLSVDTLCTNRDLVLLLPAGDANAFTLRVSAPVERIAMIRGP  476
             F+SLVD   APY E++R ++V ++ TNRDL  L+P  + + +T+  + PV  +++IR P
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  477  SRPRPPLADAQSAWRLVSHLGLARHTLTDVDDEEGARVLRELLGLHADPADAAMRRQIDG  536
              P+PPLA+ + AWRL+ +L++    L+D+D+  G++ LR+LL L   + D++  RQ+ +
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  537  VHRVAFAPVFRRLPAAGPLMFGRGVQVDVTVDDHAFSGDSPYLLGAVLEQFFARHVSINS  596
            +     +PV RRLP++G L++GRGV  ++TVD+++FSG SPYL+G VLE+++ARHVSIN+
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  597  FAECVLSSAQRGRLAQWPARVGRRPAI  623
            F++  L S QRG++  WP R G+R ++
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

131) BURPS668_A2956 in NC_009075


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  437 bits (1647),  Expect = 9e-124, Method: Compositional matrix adjust.
 Identities = 282/627 (45%), Positives = 440/627 (71%), Gaps = 4/627 (0%)

Query  1    MDTRLLDYYNRELAYLRELGGEFAQQFPKVAARLRMHESGPPDPYVERLLEGFSFLTARV  60
            MD RLL+YYNREL+YLRE G+EFA   PK+AARL M+ ++ +DPYVER++E+FSFL+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFTQALLDAVYPGYVAPLPSMAIVQFTPMMNEGSLAQGYRlpagtalrarp  120
            QLK+DAEFPRFTQ LL+ V P YV+P PSMA+V++ P  +EG LA+G  +P +TA+ +  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  aaaeqtaCEFRTAHDLTLWPLELAGASVTGAPAYLP--RSATAARRDVRGALRIRLKARG  178
            + +E+TAC+FR+++D+TLWPL +    +T+AP+ +P  +   ++  +V GALRI L++ G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  GAGLAQLP-IDRLMFHLAGPERDALHLLELIAGHTIGVVCHDAAQPPRWlhalgahalah  237
              ++++L+   RL F L G ER A HL+EL+   +++ +  ++++    L+    H++AH
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  238  QGFDADQALLPDEGRSFHGYRLLREYFAFPARFLFFSIEGLRPALARATGDTFELTLLLD  297
            +G++++Q+LLP     FHG  LL+E+FA P RF FF+  GL ++L +  G+  E+ +LL+
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  298  RHDAA-LENSVDGRRLALNCTPAVNLFARRADRIPVHPGAREHHVVVDRSRPLDYEVYAV  356
            R  +  L +  D+ +++L CTP +NLF+R + RI V  +  E+H+VVDR+RPLDYEV++V
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  357  RRLAGEQRDDGRTRAFRPFHASFAGDGGNYGAYYTVRREPRLVSAQARANGTRTGYVGSE  416
            + + G + +  R   FRP+  +   D GN G Y+++RREPR  S  AR  GTRT Y GSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  417  TFVSLVDSACAPYDESIRYLSVDTLCTNRDLVLLLPAGDANAFTLRVSAPVERIAMIRGP  476
             F+SLVD   APY E++R ++V ++ TNRDL  L+P  + + +T+  + PV  +++IR P
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  477  SRPRPPLADAQSAWRLVSHLGLARHTLTDVDDEEGARVLRELLGLHADPADAAMRRQIDG  536
              P+PPLA+ + AWRL+ +L++    L+D+D+  G++ LR+LL L   + D++  RQ+ +
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  537  VHRVAFAPVFRRLPAAGPLMFGRGVQVDVTVDDHAFSGDSPYLLGAVLEQFFARHVSINS  596
            +     +PV RRLP++G L++GRGV  ++TVD+++FSG SPYL+G VLE+++ARHVSIN+
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  597  FAECVLSSAQRGRLAQWPARVGRRPAI  623
            F++  L S QRG++  WP R G+R ++
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

132) BURPS1106A_A2831 in NC_009078


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  436 bits (1641),  Expect = 2e-123, Method: Compositional matrix adjust.
 Identities = 282/627 (45%), Positives = 440/627 (71%), Gaps = 4/627 (0%)

Query  1    MDTRLLDYYNRELAYLRELGGEFAQQFPKVAARLRMHESGPPDPYVERLLEGFSFLTARV  60
            MD RLL+YYNREL+YLRE G+EFA   PK+AARL M+ ++ +DPYVER++E+FSFL+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFTQALLDAVYPGYVAPLPSMAIVQFTPMMNEGSLAQGYRlpagtalrarp  120
            QLK+DAEFPRFTQ LL+ V P YV+P PSMA+V++ P  +EG LA+G  +P +TA+ +  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  aaaeqtaCEFRTAHDLTLWPLELAGASVTGAPAYLP--RSATAARRDVRGALRIRLKARG  178
            + +E+TAC+FR+++D+TLWPL +    +T+AP+ +P  +   ++  +V GALRI L++ G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  GAGLAQLP-IDRLMFHLAGPERDALHLLELIAGHTIGVVCHDAAQPPRWlhalgahalah  237
              ++++L+   RL F L G ER A HL+EL+   +++ +  ++++    L+    H++AH
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  238  QGFDADQALLPDEGRSFHGYRLLREYFAFPARFLFFSIEGLRPALARATGDTFELTLLLD  297
            +G++++Q+LLP     FHG  LL+E+FA P RF FF+  GL ++L +  G+  E+ +LL+
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  298  RHDAA-LENSVDARHLALNCTPAVNLFARRADRIPVHPGAREHHVVVDRSRPLDYEVYAV  356
            R  +  L +  DA +++L CTP +NLF+R + RI V  +  E+H+VVDR+RPLDYEV++V
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  357  RRLAGEQRDDGQMRAFRPFHASFAGDGGNYGAYYTVRREPRLVSAQARANGTRTGYVGSE  416
            + + G + +  +   FRP+  +   D GN G Y+++RREPR  S  AR  GTRT Y GSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  417  TFVSLVDSACAPYDESIRYLSVDTLCTNRDLVLLLPAGDANAFTLRVSAPVERIAMIRGP  476
             F+SLVD   APY E++R ++V ++ TNRDL  L+P  + + +T+  + PV  +++IR P
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  477  SRPRPPLADAQSAWRLVSHLGLARHTLTDVDDEEGARVLRELLGLHADPADAAMRRQIDG  536
              P+PPLA+ + AWRL+ +L++    L+D+D+  G++ LR+LL L   + D++  RQ+ +
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  537  VHRVAFAPVFRRLPAAGPLMFGRGVQVDVTVDDHAFSGDSPYLLGAVLEQFFARHVSINS  596
            +     +PV RRLP++G L++GRGV  ++TVD+++FSG SPYL+G VLE+++ARHVSIN+
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  597  FAECVLSSAQRGRLAQWPARVGRRPAI  623
            F++  L S QRG++  WP R G+R ++
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

133) BURPS1710b_A1196 in NC_007435


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  436 bits (1641),  Expect = 2e-123, Method: Compositional matrix adjust.
 Identities = 282/627 (45%), Positives = 440/627 (71%), Gaps = 4/627 (0%)

Query  1    MDTRLLDYYNRELAYLRELGGEFAQQFPKVAARLRMHESGPPDPYVERLLEGFSFLAARV  60
            MD RLL+YYNREL+YLRE G+EFA   PK+AARL M+ ++ +DPYVER++E+FSFL+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFTQALLDAVYPGYVAPLPSMAIVQFTPMMNEGSLAQGYRlpagtalrarp  120
            QLK+DAEFPRFTQ LL+ V P YV+P PSMA+V++ P  +EG LA+G  +P +TA+ +  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  aaaeqtaCEFRTAHDLTLWPLELAGASVTGAPAYLP--RSATAARRDVRGALRIRLKARG  178
            + +E+TAC+FR+++D+TLWPL +    +T+AP+ +P  +   ++  +V GALRI L++ G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  GAGLAQLP-IDRLMFHLAGPERDALHLLELIAGHTIGVVCHDAAQPPRWlhalgahalah  237
              ++++L+   RL F L G ER A HL+EL+   +++ +  ++++    L+    H++AH
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  238  QGFDADQALLPDEGRSFHGYRLLREYFAFPARFLFFSIEGLRPALARATGDTFELTLLLD  297
            +G++++Q+LLP     FHG  LL+E+FA P RF FF+  GL ++L +  G+  E+ +LL+
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  298  RHDAA-LENSVDARHLALNCTPAVNLFARRADRIPVHPGAREHHVVVDRSRPLDYEVYAV  356
            R  +  L +  DA +++L CTP +NLF+R + RI V  +  E+H+VVDR+RPLDYEV++V
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  357  RRLAGEQRDDGQMRAFRPFHASFAGDGGNYGAYYTVRREPRLVSAQARANGTRTGYVGSE  416
            + + G + +  +   FRP+  +   D GN G Y+++RREPR  S  AR  GTRT Y GSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  417  TFVSLVDSACAPYDESIRYLSVDTLCTNRDLVLLLPAGDANAFTLRVSAPVERIAMIRGP  476
             F+SLVD   APY E++R ++V ++ TNRDL  L+P  + + +T+  + PV  +++IR P
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  477  SRPRPPLADAQSAWRLVSHLGLARHTLTDVDDEEGARVLRELLGLHADPADAAMRRQIDG  536
              P+PPLA+ + AWRL+ +L++    L+D+D+  G++ LR+LL L   + D++  RQ+ +
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  537  VHRVAFAPVFRRLPAAGPLMFGRGVQVDVTVDDHAFSGDSPYLLGAVLEQFFARHVSINS  596
            +     +PV RRLP++G L++GRGV  ++TVD+++FSG SPYL+G VLE+++ARHVSIN+
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  597  FAECVLSSAQRGRLAQWPARVGRRPAI  623
            F++  L S QRG++  WP R G+R ++
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

134) BPC006_II2794 in NC_018529


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  436 bits (1641),  Expect = 2e-123, Method: Compositional matrix adjust.
 Identities = 282/627 (45%), Positives = 440/627 (71%), Gaps = 4/627 (0%)

Query  1    MDTRLLDYYNRELAYLRELGGEFAQQFPKVAARLRMHESGPPDPYVERLLEGFSFLTARV  60
            MD RLL+YYNREL+YLRE G+EFA   PK+AARL M+ ++ +DPYVER++E+FSFL+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFTQALLDAVYPGYVAPLPSMAIVQFTPMMNEGSLAQGYRlpagtalrarp  120
            QLK+DAEFPRFTQ LL+ V P YV+P PSMA+V++ P  +EG LA+G  +P +TA+ +  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  aaaeqtaCEFRTAHDLTLWPLELAGASVTGAPAYLP--RSATAARRDVRGALRIRLKARG  178
            + +E+TAC+FR+++D+TLWPL +    +T+AP+ +P  +   ++  +V GALRI L++ G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  GAGLAQLP-IDRLMFHLAGPERDALHLLELIAGHTIGVVCHDAAQPPRWlhalgahalah  237
              ++++L+   RL F L G ER A HL+EL+   +++ +  ++++    L+    H++AH
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  238  QGFDADQALLPDEGRSFHGYRLLREYFAFPARFLFFSIEGLRPALARATGDTFELTLLLD  297
            +G++++Q+LLP     FHG  LL+E+FA P RF FF+  GL ++L +  G+  E+ +LL+
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  298  RHDAA-LENSVDARHLALNCTPAVNLFARRADRIPVHPGAREHHVVVDRSRPLDYEVYAV  356
            R  +  L +  DA +++L CTP +NLF+R + RI V  +  E+H+VVDR+RPLDYEV++V
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  357  RRLAGEQRDDGQMRAFRPFHASFAGDGGNYGAYYTVRREPRLVSAQARANGTRTGYVGSE  416
            + + G + +  +   FRP+  +   D GN G Y+++RREPR  S  AR  GTRT Y GSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  417  TFVSLVDSACAPYDESIRYLSVDTLCTNRDLVLLLPAGDANAFTLRVSAPVERIAMIRGP  476
             F+SLVD   APY E++R ++V ++ TNRDL  L+P  + + +T+  + PV  +++IR P
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  477  SRPRPPLADAQSAWRLVSHLGLARHTLTDVDDEEGARVLRELLGLHADPADAAMRRQIDG  536
              P+PPLA+ + AWRL+ +L++    L+D+D+  G++ LR+LL L   + D++  RQ+ +
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  537  VHRVAFAPVFRRLPAAGPLMFGRGVQVDVTVDDHAFSGDSPYLLGAVLEQFFARHVSINS  596
            +     +PV RRLP++G L++GRGV  ++TVD+++FSG SPYL+G VLE+++ARHVSIN+
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  597  FAECVLSSAQRGRLAQWPARVGRRPAI  623
            F++  L S QRG++  WP R G+R ++
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

135) BPSS2096 in NC_006351


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  436 bits (1641),  Expect = 2e-123, Method: Compositional matrix adjust.
 Identities = 282/627 (45%), Positives = 440/627 (71%), Gaps = 4/627 (0%)

Query  1    MDTRLLDYYNRELAYLRELGGEFAQQFPKVAARLRMHESGPPDPYVERLLEGFSFLTARV  60
            MD RLL+YYNREL+YLRE G+EFA   PK+AARL M+ ++ +DPYVER++E+FSFL+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFTQALLDAVYPGYVAPLPSMAIVQFTPMMNEGSLAQGYRlpagtalrarp  120
            QLK+DAEFPRFTQ LL+ V P YV+P PSMA+V++ P  +EG LA+G  +P +TA+ +  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  aaaeqtaCEFRTAHDLTLWPLELAGASVTGAPAYLP--RSATAARRDVRGALRIRLKARG  178
            + +E+TAC+FR+++D+TLWPL +    +T+AP+ +P  +   ++  +V GALRI L++ G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  GAGLAQLP-IDRLMFHLAGPERDALHLLELIAGHTIGVVCHDAAQPPRWlhalgahalah  237
              ++++L+   RL F L G ER A HL+EL+   +++ +  ++++    L+    H++AH
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  238  QGFDADQALLPDEGRSFHGYRLLREYFAFPARFLFFSIEGLRPALARATGDTFELTLLLD  297
            +G++++Q+LLP     FHG  LL+E+FA P RF FF+  GL ++L +  G+  E+ +LL+
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  298  RHDAA-LENSVDARHLALNCTPAVNLFARRADRIPVHPGAREHHVVVDRSRPLDYEVYAV  356
            R  +  L +  DA +++L CTP +NLF+R + RI V  +  E+H+VVDR+RPLDYEV++V
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  357  RRLAGEQRDDGQMRAFRPFHASFAGDGGNYGAYYTVRREPRLVSAQARANGTRTGYVGSE  416
            + + G + +  +   FRP+  +   D GN G Y+++RREPR  S  AR  GTRT Y GSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  417  TFVSLVDSACAPYDESIRYLSVDTLCTNRDLVLLLPAGDANAFTLRVSAPVERIAMIRGP  476
             F+SLVD   APY E++R ++V ++ TNRDL  L+P  + + +T+  + PV  +++IR P
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  477  SRPRPPLADAQSAWRLVSHLGLARHTLTDVDDEEGARVLRELLGLHADPADAAMRRQIDG  536
              P+PPLA+ + AWRL+ +L++    L+D+D+  G++ LR+LL L   + D++  RQ+ +
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  537  VHRVAFAPVFRRLPAAGPLMFGRGVQVDVTVDDHAFSGDSPYLLGAVLEQFFARHVSINS  596
            +     +PV RRLP++G L++GRGV  ++TVD+++FSG SPYL+G VLE+++ARHVSIN+
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  597  FAECVLSSAQRGRLAQWPARVGRRPAI  623
            F++  L S QRG++  WP R G+R ++
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

136) BDL_5558 in NC_021877


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  436 bits (1641),  Expect = 2e-123, Method: Compositional matrix adjust.
 Identities = 282/627 (45%), Positives = 440/627 (71%), Gaps = 4/627 (0%)

Query  1    MDTRLLDYYNRELAYLRELGGEFAQQFPKVAARLRMHESGPPDPYVERLLEGFSFLTARV  60
            MD RLL+YYNREL+YLRE G+EFA   PK+AARL M+ ++ +DPYVER++E+FSFL+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFTQALLDAVYPGYVAPLPSMAIVQFTPMMNEGSLAQGYRlpagtalrarp  120
            QLK+DAEFPRFTQ LL+ V P YV+P PSMA+V++ P  +EG LA+G  +P +TA+ +  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  aaaeqtaCEFRTAHDLTLWPLELAGASVTGAPAYLP--RSATAARRDVRGALRIRLKARG  178
            + +E+TAC+FR+++D+TLWPL +    +T+AP+ +P  +   ++  +V GALRI L++ G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  GAGLAQLP-IDRLMFHLAGPERDALHLLELIAGHTIGVVCHDAAQPPRWlhalgahalah  237
              ++++L+   RL F L G ER A HL+EL+   +++ +  ++++    L+    H++AH
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  238  QGFDADQALLPDEGRSFHGYRLLREYFAFPARFLFFSIEGLRPALARATGDTFELTLLLD  297
            +G++++Q+LLP     FHG  LL+E+FA P RF FF+  GL ++L +  G+  E+ +LL+
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  298  RHDAA-LENSVDARHLALNCTPAVNLFARRADRIPVHPGAREHHVVVDRSRPLDYEVYAV  356
            R  +  L +  DA +++L CTP +NLF+R + RI V  +  E+H+VVDR+RPLDYEV++V
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  357  RRLAGEQRDDGQMRAFRPFHASFAGDGGNYGAYYTVRREPRLVSAQARANGTRTGYVGSE  416
            + + G + +  +   FRP+  +   D GN G Y+++RREPR  S  AR  GTRT Y GSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  417  TFVSLVDSACAPYDESIRYLSVDTLCTNRDLVLLLPAGDANAFTLRVSAPVERIAMIRGP  476
             F+SLVD   APY E++R ++V ++ TNRDL  L+P  + + +T+  + PV  +++IR P
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  477  SRPRPPLADAQSAWRLVSHLGLARHTLTDVDDEEGARVLRELLGLHADPADAAMRRQIDG  536
              P+PPLA+ + AWRL+ +L++    L+D+D+  G++ LR+LL L   + D++  RQ+ +
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  537  VHRVAFAPVFRRLPAAGPLMFGRGVQVDVTVDDHAFSGDSPYLLGAVLEQFFARHVSINS  596
            +     +PV RRLP++G L++GRGV  ++TVD+++FSG SPYL+G VLE+++ARHVSIN+
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  597  FAECVLSSAQRGRLAQWPARVGRRPAI  623
            F++  L S QRG++  WP R G+R ++
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

137) ST548_p7042 in NC_020181


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  436 bits (1643),  Expect = 2e-123, Method: Compositional matrix adjust.
 Identities = 284/633 (45%), Positives = 433/633 (69%), Gaps = 16/633 (2%)

Query  1    MEGKLLEYYNRELAYLREMGAEFAERYPKVAGRLGMRGIEVADPYVERMMEGFAFLTSRV  60
            M+ +LLEYYNREL+YLRE GAEFA   PK+A+RLGM+G ++ADPYVERM+E+F+FL++R 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFSQRLLEMIAPNYLAPTPSMAIAELQPDINKGDLSKGFVVPRGTMMDSQV  120
            QLK+DAEFPRF+QRLLE++ PNY++PTPSMA+  L PD + GDL+KG  VPR+T   S +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  LKKNGVTCSYTTAHDVTLLPLRIEKAELGGIPADVPLAALGLSQRGAVSALRLRISCEGA  180
               +  +C + +++DVTL PL IE   L + P+D+P     L+    V++  LRI+    
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAG-ALRIT---L  176

Query  181  QHLGHLTFD------RLAFFLSGPDiealrllelilaHQVGVVCQTTGR--DPLRFSLSE  232
            + +G+L+F       RL+F+L G +  A +L+EL+ +  V+ +    G+  + L  +L +
Sbjct  177  RTFGELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNL-Q  235

Query  233  EAIQQEGFAAKQALLPEDLRNFDGYRLLHEYFAFPARFRFISINGLSKLIGQCKEEKSFD  292
            +++ +EG+ + Q+LLP     F+G  LLHE+FA P RF F++  GLS  + + + + + +
Sbjct  236  HPVAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVA-E  294

Query  293  IIILLDK-TDDRLEQVVEANHFALHCTPVINLFPKIAARQSLSDSQHEYHLVVDNIRPLD  351
            I+ILL++   D+L +  +A +F+L CTPVINLFP+ ++R  +++S  E HLVVD  RPLD
Sbjct  295  IVILLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLD  354

Query  352  YEIYSVSKIHGSADGHRDDREFRPFWSSWSKDAGDYGAYFSLRREQRVLSEHALRYGTRT  411
            YE++SV  ++G          FRP+  ++++D G+ G YFSLRRE R  SE A RYGTRT
Sbjct  355  YEVFSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRT  414

Query  412  GYTGSETFVSLVDEQHAPWQEDLRYITAEVLCTSRDLP-LMLQQELGQFVLADSLPVKTL  470
             YTGSE F+SLVD+++AP  E+LR IT   + T+RDLP L+ ++  +++ +  ++PV  +
Sbjct  415  PYTGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGV  474

Query  471  KMRSGPTPPRPALAEGLSTWRLISQLQMNYLSLMDGENGEGAAALRQLLGLYAGLAETAV  530
             +   P PP+P+LAE   +WRLI QL  NYL+L D ++  G+ ALR+LL L+    +++ 
Sbjct  475  GLIRPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQ  534

Query  531  ARQIEGVRHCVLEPVHRRVPEPGPIVFARGIGITLTVDERAFSGASPWLFGSVLERVFAR  590
            +RQ+ ++  C   PV RR+P +G +V++RG++  LTVDE +FSG SP LFG VLE+ +AR
Sbjct  535  SRQVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIAR  594

Query  591  LVSLNSFTEFTLCSQQRGEIGYWAPRMGKRALI  623
             VS+N+F++ TL S QRG++  W+ R G+R+ +
Sbjct  595  HVSINTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

138) impG in NC_014121


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  435 bits (1639),  Expect = 4e-123, Method: Compositional matrix adjust.
 Identities = 278/633 (44%), Positives = 430/633 (68%), Gaps = 16/633 (2%)

Query  3    VESKLLEYYNRELAYLREMGAEFAERYPKVAGRLGMRGIEVADPYTERLMEGFAFLTSRV  62
            ++++LLEYYNREL+YLRE GAEFA   PK+A+RLGM+G ++ADPY ER++E+F+FL++R 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  63   QMKMDAEFPRFSQRLLEMIAPNYLAPTPSMAIAEIQPDSSRGDLSNGFIVPRGTMMDSLA  122
            Q+K+DAEFPRF+QRLLE++ PNY++PTPSMA+  + PD+  GDL++G  VPR+T   S  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  123  LKKTGVTCSYTTAHEVNLLPLKIDKVELGGVPADLPltql-glgqqgISSALRIRIACDG  181
                  +C + ++++V L PL I+ V L + P+D+P  +     +  +++ALRI +    
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITL----  176

Query  182  PQNLGHLDFD------RLEFFLSGPDIEALKLLELVMEHHVGVVCQTVSK-HPQRDVLAS  234
             + +G+L F       RL F+L G +  A  L+EL+    V+ +    +  + + +V   
Sbjct  177  -RTFGELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQ  235

Query  235  DALRQEGFDADQSLLPDDLRNFDGYRLLQEYFAFPARFRFISLSGLSKLIQRCENEKAFD  294
            +++ +EG++++Q+LLP     F+G  LL+E+FA P RF F++ +GLS  +Q+ + + A +
Sbjct  236  HPVAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVA-E  294

Query  295  IFILLDKTDEQ-LERVVDASHLALHCTPVINLFPKVAARQKLSEGQHEYHLVVDNIRPLD  353
            I ILL++   + L +  DA++++L CTPVINLFP+ ++R  ++++  E HLVVD  RPLD
Sbjct  295  IVILLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLD  354

Query  354  YEIYAVNKIYGSADGQRDDQTFRPFWSTWSGDAGNYGAYFSLRREQRVLSEHALRYGTRT  413
            YE+++V+ + G          FRP+  T++ D GN G YFSLRRE R  SE A RYGTRT
Sbjct  355  YEVFSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRT  414

Query  414  GYIGSEVFVSLVDEQHAPWQENLRYISAEVLCTSRDLP-LMLQQELGQFIMADSMPVKSL  472
             Y GSEVF+SLVD+++AP  ENLR I+   + T+RDLP L+ ++  +++ +  ++PV ++
Sbjct  415  PYTGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGV  474

Query  473  TLRKGPTPPRPALAEGFSTWRLISQLQMNYLSLMDSENEEGAAALRQLLGLYANLAETPV  532
             L + P PP+P+LAE   +WRLI QL  NYL+L D ++  G+ ALR+LL L+    ++P 
Sbjct  475  GLIRPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQ  534

Query  533  ARQVEGVRHCVLEPVHRRVPEPGPVVFARGIGITLTVDERAFSGASPWLFGSVLERLFAR  592
            +RQV ++  C   PV RR+P +G +V++RG++  LTVDE +FSG SP LFG VLE+ +AR
Sbjct  535  SRQVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIAR  594

Query  593  LVSINSFTEFTLKSQQRGEIGYWAPRMGKRALV  625
             VSIN+F++ TL S QRG++  W+ R G+R+ V
Sbjct  595  HVSINTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

139) EbC_05930 in NC_014306


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  434 bits (1636),  Expect = 6e-123, Method: Compositional matrix adjust.
 Identities = 283/629 (45%), Positives = 442/629 (71%), Gaps = 6/629 (0%)

Query  1    MDSKLLDYYNRELAYLREMGAEFAERYPKVAGRLGMRGIDVADPYVERLMEGFAFLTSRV  60
            MD++LL+YYNREL+YLRE GAEFA   PK+A+RLGM+G D+ADPYVER++E+F+FL++R 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFSQRMLEMIAPNYLAPTPSMAIAELHPDSQKGDISGGFRVPRGTMMDSQT  120
            QLK+DAEFPRF+QR+LE++ PNY++PTPSMA+  L PD+Q GD++ G  VPR+T   S  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  LKKSGVTCSYSTAHDVMLQPLTITSVELGGVPADIPLGPMGLSQR-GAASALRIRLTCFN  179
                  +C + +++DV L PL+I  V L + P+D+P     L+     A+ALRI L  F 
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  180  DVTLNTLTFDD-LMFFLSGPDIQAQKLLELIMQHTVGSFC-QTVEAQPQRVVMNDEALTQ  237
            +++++ L+    L F+L G +  A  L+EL+   +V+++  +  + + +  V  ++++++
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  238  EGFSPDQALLPDDLRNFDGYRLLQEYFAFPARFQFINISQLRGILGKCGPDVKAFEIVLL  297
            EG+ P+Q+LLP     F+G  LL+E+FA P RF F+  + L + L K   +V   EIV+L
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVA--EIVIL  298

Query  298  LDKADAA-LERVIDKSHLSLHCTPVINLFPKTAERQKISDSVHEYHLVVDNIRPLDYEIY  356
            L++  +  L +  D +++SL CTPVINLFP+T+ R  +++SV E HLVVD  RPLDYE++
Sbjct  299  LNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVF  358

Query  357  SVQKLYATGDKRRDEQVFRPFWSTFSQDHGDYGAYFSLRREQRTLSERAQRYGTRTGYVG  416
            SVQ + +         +FRP+  T ++D+G+ G YFSLRRE R  SE A+RYGTRT Y G
Sbjct  359  SVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTG  418

Query  417  SEVFLSLVDERHSPWSDDLRHLTADVLCTSRDLPLMLLQQDQGNFLMPDSIPVGQLTLKK  476
            SEVFLSLVD++++P +++LRH+T   + T+RDLP ++ +++++++ +  +IPV+ + L +
Sbjct  419  SEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIR  478

Query  477  GPTPPRPALAEGLTTWRLISHLQMNYLSLMDSDEgqgaaalrqllglyaNLAEAPVARQI  536
             P PP+P+LAE   +WRLI +L  NYL+L D D+  G+ ALR+LL L+    ++P +RQ+
Sbjct  479  PPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQV  538

Query  537  EGIRHCQLKPVYRRVPEPGPIVFARGVGIELSVDEQAFSGSSPWLLGSVLERVFSRLVAM  596
             ++  C+  PV RR+P +G +V++RGV+ EL+VDE++FSG SP L+G VLE+ ++R V++
Sbjct  539  RSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSI  598

Query  597  NSFTEVTLISQQRGEVGYWSPRMGKRALI  625
            N+F+++TL S QRG+V  W+ R G+R+ +
Sbjct  599  NTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

140) Pvag_1040 in NC_014562


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  434 bits (1635),  Expect = 7e-123, Method: Compositional matrix adjust.
 Identities = 278/632 (44%), Positives = 434/632 (69%), Gaps = 14/632 (2%)

Query  1    MDSNLLDYYNRELAYLREMGAEFATRYPKVAGRLGMHGIDVADPYVERLMEGFAFLTSRV  60
            MD+ LL+YYNREL+YLRE GAEFAT  PK+A+RLGM+G D+ADPYVER++E+F+FL++R 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFSQRLLEMIAPSYLSPTPSMAIAQLTPDSRKGDITQGFRVPRGTMMESQN  120
            QLK+DAEFPRF+QRLLE++ P+Y++PTPSMA+ +L PD++ GD+++G  VPR+T   S  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  LKKTGVTCSYTTAHDVVLHPLRISEVTLGGVPGDLPSGELKlgglgaasalRIRISCEGI  180
                  +C + +++DV L PL I EV L + P D+P+ + +        A  +RI+   +
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALH-RYLPPNIHVAGALRIT---L  176

Query  181  SSLSQLSVDDLM------LFLSGPDIQALKLLELLMQHRVGIVLQSAEQ-RPQRQVLTDE  233
             ++++L+  +L       ++L G +  A  L+ELL    V+ +   + +   + +V  ++
Sbjct  177  RTFGELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQH  236

Query  234  ALQQEGFAPEQALLPDDLRNFDGYRLLQEYFAFPARFQFISLSQLGPFLRRCDSATAFDI  293
            ++ +EG+ P Q+LLP     F+G  LL+E+FA P RF F++ + L++ L++ ++  A +I
Sbjct  237  PVAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVA-EI  295

Query  294  IILLDKADSA-LESVVDHSHLALHCTPVINLFPKTAERLKVSDSQHEYHLVVDNIRPLDY  352
            +ILL++  +  L    D ++++L CTPVINLFP+T+ R+ V++S  E HLVVD  RPLDY
Sbjct  296  VILLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDY  355

Query  353  EVHSVQRLFATVEGQREEQVFRPFWSTFSGDQGDYGAYFSLRREQRTLSEQAQRYGTRTG  412
            EV SVQ + +         +FRP+  T + D+G+ G YFSLRRE R  SE A+RYGTRT 
Sbjct  356  EVFSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTP  415

Query  413  YIGSEVFLSLVDEHHAPWRDDVRYLSAEVMCTSRDLP-LMLQQDQGNFVMPDSIPVSELK  471
            Y GSEVFLSLVD+H+AP  +++R ++   M T+RDLP L+ +++++++ +  +IPV+ + 
Sbjct  416  YTGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVG  475

Query  472  LCKGPTPPRPALAEGLSAWRLISHLQMNYLSLMDSSDGEGAAALRQLLSLYANLAEAPVA  531
            L + P PP+P+LAE   AWRLI +L  NYL+L D  +  G+ ALR+LL+L+    ++P +
Sbjct  476  LIRPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQS  535

Query  532  RQIDGIRHCTLSAVNRRVPEPGPVVFARGVSITLEVDEQAFSGASPWLFGSVLERVCGRL  591
            RQ+ ++  C  ++V RR+P +G +V++RGVS  L VDE++FSG SP LFG VLE+  +R 
Sbjct  536  RQVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARH  595

Query  592  VALNSFTEFTLNSQQRGEVGYWPPRMGRKALI  623
            V++N+F++ TL+S QRG+V  WP R G+++ +
Sbjct  596  VSINTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

141) ESA_03923 in NC_009778


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  434 bits (1635),  Expect = 8e-123, Method: Compositional matrix adjust.
 Identities = 282/628 (45%), Positives = 430/628 (69%), Gaps = 6/628 (0%)

Query  1    MDSKLLEYYNRELAYLREMGAEFAERYPKVAGRLGMRGIEVADPYIERLMEGFAFLTSRV  60
            MD++LLEYYNREL+YLRE GAEFA   PK+A+RLGM+G ++ADPY+ER++E+F+FL++R 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFSQRLLEMLAPNYLAPTPSMAIAELHPDSAKGDLSNGFVVPRGTMMDSQL  120
            QLK+DAEFPRF+QRLLE++ PNY++PTPSMA+  L PD+  GDL++G  VPR+T   S +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  LKKNGVTCSYATAHDVRLLPLHISQVELGGVPADAPLSQLGLSQRGAVS-ALRVRIACDG  179
               +  +C + +++DV L PL I +V L + P+D P  +  L+    V+ ALR+ +   G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  180  PVLLNHL-DFDRLDFFLSGPDIQALQLLELLMEHRVGIFCQTVGPKPSRVVLA-DDALRQ  237
             + +++L +  RL F+L G +  A +L+ELL    V+ +    G   + + +  ++++ +
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  238  EGFEADQALLPDDLRNFDGYRLLQEYFAFPARFQFLSLRGIGKLLAQSGQANAFDIIILL  297
            EG+E++Q+LLP     F+G  LL+E+FA P RF F++  G++  L Q  Q+N  +I+ILL
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGL-QKVQGNVAEIVILL  299

Query  298  DKTDTP-LERVVDKSHLAMHCTPVINLFPKIAERQKLTEGLSEYHLVVDNIRPLDYEIFS  356
            ++     L +  D +++++ CTPVINLFP+ + R  +T++++E HLVVD  RPLDYE+FS
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  357  VSKIYASEDGQRDDQIFRPFWSTWSRDGGNYGAYFSLRREHRALSEHALRYGTRTGYVGS  416
            V  + + E       IFRP+  T++ D GN G YFSLRRE R  SE A RYGTRT Y GS
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGS  419

Query  417  EAFVSLVDASHAPWRDELRYITAEVMCTSRDLP-LMLAQDMGQFVLPDSMPVRALTMRKG  475
            E F+SLVD  +AP  ++LR IT   M T+RDLP L+  ++ +++ +  ++PV ++ + + 
Sbjct  420  EVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRP  479

Query  476  PTPPRPALAEGFSTWRLISQLQMNYLSLMDAEDGEGAAALRQLLGLYARLAEAPVARQID  535
            P PP+P+LAE   +WRLI QL  NYL+L D ++  G+ ALR+LL L+    ++P +RQ+ 
Sbjct  480  PRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVR  539

Query  536  GIRHCVLEPVHRRVPEPGPIVFARGVGISMTVDEQAFSGSSPWLLGSVLERVFARLVSMN  595
            ++  C   PV RR+P +G +V++RGV+  +TVDE++FSG SP L+G VLE+ +AR VS+N
Sbjct  540  SLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSIN  599

Query  596  SFTEFTLKSQQRGEVGYWGPRMGKRALI  623
            +F++ TL S QRG+V  W  R G+R+ +
Sbjct  600  TFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

142) ES15_3833 in NC_017933


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  434 bits (1635),  Expect = 8e-123, Method: Compositional matrix adjust.
 Identities = 282/628 (45%), Positives = 430/628 (69%), Gaps = 6/628 (0%)

Query  1    MDSKLLEYYNRELAYLREMGAEFAERYPKVAGRLGMRGIEVADPYIERLMEGFAFLTSRV  60
            MD++LLEYYNREL+YLRE GAEFA   PK+A+RLGM+G ++ADPY+ER++E+F+FL++R 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFSQRLLEMLAPNYLAPTPSMAIAELHPDSAKGDLSNGFVVPRGTMMDSQL  120
            QLK+DAEFPRF+QRLLE++ PNY++PTPSMA+  L PD+  GDL++G  VPR+T   S +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  LKKNGVTCSYATAHDVRLLPLHISQVELGGVPADAPLSQLGLSQRGAVS-ALRVRIACDG  179
               +  +C + +++DV L PL I +V L + P+D P  +  L+    V+ ALR+ +   G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  180  PVLLNHL-DFDRLDFFLSGPDIQALQLLELLMEHRVGIFCQTVGPKPSRVVLA-DDALRQ  237
             + +++L +  RL F+L G +  A +L+ELL    V+ +    G   + + +  ++++ +
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  238  EGFEADQALLPDDLRNFDGYRLLQEYFAFPARFQFLSLRGIGKLLAQSGQANAFDIIILL  297
            EG+E++Q+LLP     F+G  LL+E+FA P RF F++  G++  L Q  Q+N  +I+ILL
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGL-QKVQGNVAEIVILL  299

Query  298  DKTDTP-LERVVDKSHLAMHCTPVINLFPKIAERQKLTEGLSEYHLVVDNIRPLDYEIFS  356
            ++     L +  D +++++ CTPVINLFP+ + R  +T++++E HLVVD  RPLDYE+FS
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  357  VSKIYASEDGQRDDQIFRPFWSTWSRDGGNYGAYFSLRREQRALSEHALRYGTRTGYVGS  416
            V  + + E       IFRP+  T++ D GN G YFSLRRE R  SE A RYGTRT Y GS
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGS  419

Query  417  EAFVSLVDASHAPWRDELRYITAEVMCTSRDLP-LMLAQDMGQFVLPDSMPVRALTMRKG  475
            E F+SLVD  +AP  ++LR IT   M T+RDLP L+  ++ +++ +  ++PV ++ + + 
Sbjct  420  EVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRP  479

Query  476  PTPPRPALAEGFSTWRLISQLQMNYLSLMDAEDGEGAAALRQLLGLYARLAEAPVARQID  535
            P PP+P+LAE   +WRLI QL  NYL+L D ++  G+ ALR+LL L+    ++P +RQ+ 
Sbjct  480  PRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVR  539

Query  536  GIRHCVLEPVHRRVPEPGPIVFARGVGISMTVDEQAFSGSSPWLLGSVLERVFARLVSMN  595
            ++  C   PV RR+P +G +V++RGV+  +TVDE++FSG SP L+G VLE+ +AR VS+N
Sbjct  540  SLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSIN  599

Query  596  SFTEFTLKSQQRGEVGYWGPRMGKRALI  623
            +F++ TL S QRG+V  W  R G+R+ +
Sbjct  600  TFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

143) CSSP291_18155 in NC_020260


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  434 bits (1635),  Expect = 8e-123, Method: Compositional matrix adjust.
 Identities = 282/628 (45%), Positives = 430/628 (69%), Gaps = 6/628 (0%)

Query  1    MDSKLLEYYNRELAYLREMGAEFAERYPKVAGRLGMRGIEVADPYIERLMEGFAFLTSRV  60
            MD++LLEYYNREL+YLRE GAEFA   PK+A+RLGM+G ++ADPY+ER++E+F+FL++R 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFSQRLLEMLAPNYLAPTPSMAIAELHPDSAKGDLSNGFVVPRGTMMDSQL  120
            QLK+DAEFPRF+QRLLE++ PNY++PTPSMA+  L PD+  GDL++G  VPR+T   S +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  LKKNGVTCSYATAHDVRLLPLHISQVELGGVPADAPLSQLGLSQRGAVS-ALRVRIACDG  179
               +  +C + +++DV L PL I +V L + P+D P  +  L+    V+ ALR+ +   G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  180  PVLLNHL-DFDRLDFFLSGPDIQALQLLELLMEHRVGIFCQTVGPKPSRVVLA-DDALRQ  237
             + +++L +  RL F+L G +  A +L+ELL    V+ +    G   + + +  ++++ +
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  238  EGFEADQALLPDDLRNFDGYRLLQEYFAFPARFQFLSLRGIGKLLAQSGQANAFDIIILL  297
            EG+E++Q+LLP     F+G  LL+E+FA P RF F++  G++  L Q  Q+N  +I+ILL
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGL-QKVQGNVAEIVILL  299

Query  298  DKTDTP-LERVVDKSHLAMHCTPVINLFPKIAERQKLTEGLSEYHLVVDNIRPLDYEIFS  356
            ++     L +  D +++++ CTPVINLFP+ + R  +T++++E HLVVD  RPLDYE+FS
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  357  VSKIYASEDGQRDDQIFRPFWSTWSRDGGNYGAYFSLRREQRALSEHALRYGTRTGYVGS  416
            V  + + E       IFRP+  T++ D GN G YFSLRRE R  SE A RYGTRT Y GS
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGS  419

Query  417  EAFVSLVDASHAPWRDELRYITAEVMCTSRDLP-LMLAQDMGQFVLPDSMPVRALTMRKG  475
            E F+SLVD  +AP  ++LR IT   M T+RDLP L+  ++ +++ +  ++PV ++ + + 
Sbjct  420  EVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRP  479

Query  476  PTPPRPALAEGFSTWRLISQLQMNYLSLMDAEDGEGAAALRQLLGLYARLAEAPVARQID  535
            P PP+P+LAE   +WRLI QL  NYL+L D ++  G+ ALR+LL L+    ++P +RQ+ 
Sbjct  480  PRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVR  539

Query  536  GIRHCVLEPVHRRVPEPGPIVFARGVGISMTVDEQAFSGSSPWLLGSVLERVFARLVSMN  595
            ++  C   PV RR+P +G +V++RGV+  +TVDE++FSG SP L+G VLE+ +AR VS+N
Sbjct  540  SLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSIN  599

Query  596  SFTEFTLKSQQRGEVGYWGPRMGKRALI  623
            +F++ TL S QRG+V  W  R G+R+ +
Sbjct  600  TFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

144) PAJ_1658 in NC_017531


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  433 bits (1629),  Expect = 2e-122, Method: Compositional matrix adjust.
 Identities = 276/626 (45%), Positives = 430/626 (69%), Gaps = 4/626 (0%)

Query  1    MDSKLLDYYNRELAYLREMGAEFAAQYPKVAGRLGMRGIDVADPYVERLMEGFAFLTSRV  60
            MD++LL+YYNREL+YLRE GAEFA+  PK+A+RLGM+G D+ADPYVER++E+F+FL++R 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFSQRMLEMVAPGYLSPTPSMAIAQLTPDSRKGDISNGFLVPRGTMMESQN  120
            QLK+DAEFPRF+QR+LE+V P Y++PTPSMA+ +L PD++ GD+++G  VPR+T   S  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  LKKTGVTCSYTTAHDVMLQPLRISDVSLGGVPADIPLGELKAGGSTAASSALRIRITCEG  180
                  +C + +++DV L PL I +V L + P+D+P  +     +   ++ALRI +   G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  ISSLSQLSLDDVM-FFLSGPDIQALKLMELLMQHRVGIIL-QSVEAKPQRQVLPDDALQQ  238
              ++S+L+    + F+L G +  A  L ELL    V+ +  ++ +   + +V  ++++ +
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  239  EGFSTEQALLPDDLRNFDGYRLLQEYFAFPARFQFISLRQLAPFLQRCDNALSFDIVILL  298
            EG+   Q+LLP     F+G  LL+E+FA P RF F++   L++ LQ+ +  ++ +IVILL
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVA-EIVILL  299

Query  299  DKADAA-LESVVDSAHLALHCTPVINLFPKTAERLKVSDSQHEYHLVVDNIRPLDYEIHS  357
            ++  +  L    D+A+++L CTPVINLFP+T+ R+ V++S  E HLVVD  RPLDYE+ S
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  358  VKRLFASVEGQREEQIFRPFWSTFSHDGGDYGAYFSLRREQRTLSEHALRYGTRTGYIGS  417
            V+ + +         IFRP+  T ++D G+ G YFSLRRE R  SE A RYGTRT Y GS
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGS  419

Query  418  EVFLSLVDQNHTPWNSDIRYLSAEVMCTSRDLPLMLLQQEQANFVMPDSIPVGQLKLCKG  477
            EVFLSLVDQ+++P   ++R ++   M T+RDLP ++ ++ + ++ +  +IPV+ + L + 
Sbjct  420  EVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRP  479

Query  478  PTPPRPALAEGLSAWRLISHLQMNYLSLMDSSDGEGAAALRQMLSLYASLAETPLTRQID  537
            P PP+P+LAE   AWRLI +L  NYL+L D  +  G+ ALR++L+L+ +  ++P +RQ+ 
Sbjct  480  PRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVR  539

Query  538  GIRHCNLKAVHRRVPEPGPVVFARGVSIALEVDEQAFSGASPWLFGSVLERVFSRLVALN  597
            ++  C+  +V RR+P +G +V++RGVS  L VDE++FSG SP LFG VLE+ ++R V++N
Sbjct  540  SLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSIN  599

Query  598  SFTEFTLSSQQRGEVGYWPPRMGKKA  623
            +F++ TL S QRG+V  WP R G+++
Sbjct  600  TFSQMTLHSMQRGHVMTWPVRTGQRG  625

145) PANA_2356 in NC_013956


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  433 bits (1629),  Expect = 2e-122, Method: Compositional matrix adjust.
 Identities = 276/626 (45%), Positives = 430/626 (69%), Gaps = 4/626 (0%)

Query  1    MDSKLLDYYNRELAYLREMGAEFAAQYPKVAGRLGMRGIDVADPYVERLMEGFAFLTSRV  60
            MD++LL+YYNREL+YLRE GAEFA+  PK+A+RLGM+G D+ADPYVER++E+F+FL++R 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFSQRMLEMVAPGYLSPTPSMAIAQLTPDSRKGDISNGFLVPRGTMMESQN  120
            QLK+DAEFPRF+QR+LE+V P Y++PTPSMA+ +L PD++ GD+++G  VPR+T   S  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  LKKTGVTCSYTTAHDVMLQPLRISDVSLGGVPADIPLGELKAGGSTAASSALRIRITCEG  180
                  +C + +++DV L PL I +V L + P+D+P  +     +   ++ALRI +   G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  ISSLSQLSLDDVM-FFLSGPDIQALKLMELLMQHRVGIIL-QSVEAKPQRQVLPDDALQQ  238
              ++S+L+    + F+L G +  A  L ELL    V+ +  ++ +   + +V  ++++ +
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  239  EGFSTEQALLPDDLRNFDGYRLLQEYFAFPARFQFISLRQLAPFLQRCDNALSFDIVILL  298
            EG+   Q+LLP     F+G  LL+E+FA P RF F++   L++ LQ+ +  ++ +IVILL
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVA-EIVILL  299

Query  299  DKADAA-LESVVDSAHLALHCTPVINLFPKTAERLKVSDSQHEYHLVVDNIRPLDYEIHS  357
            ++  +  L    D+A+++L CTPVINLFP+T+ R+ V++S  E HLVVD  RPLDYE+ S
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  358  VKRLFASVEGQREEQIFRPFWSTFSHDGGDYGAYFSLRREQRTLSEHALRYGTRTGYIGS  417
            V+ + +         IFRP+  T ++D G+ G YFSLRRE R  SE A RYGTRT Y GS
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGS  419

Query  418  EVFLSLVDQNHTPWNSDIRYLSAEVMCTSRDLPLMLLQQEQANFVMPDSIPVGQLKLCKG  477
            EVFLSLVDQ+++P   ++R ++   M T+RDLP ++ ++ + ++ +  +IPV+ + L + 
Sbjct  420  EVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRP  479

Query  478  PTPPRPALAEGLSAWRLISHLQMNYLSLMDSSDGEGAAALRQMLSLYASLAETPLTRQID  537
            P PP+P+LAE   AWRLI +L  NYL+L D  +  G+ ALR++L+L+ +  ++P +RQ+ 
Sbjct  480  PRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVR  539

Query  538  GIRHCNLKAVHRRVPEPGPVVFARGVSIALEVDEQAFSGASPWLFGSVLERVFSRLVALN  597
            ++  C+  +V RR+P +G +V++RGVS  L VDE++FSG SP LFG VLE+ ++R V++N
Sbjct  540  SLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSIN  599

Query  598  SFTEFTLSSQQRGEVGYWPPRMGKKA  623
            +F++ TL S QRG+V  WP R G+++
Sbjct  600  TFSQMTLHSMQRGHVMTWPVRTGQRG  625

146) PAGR_g1672 in NC_017554


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  433 bits (1629),  Expect = 2e-122, Method: Compositional matrix adjust.
 Identities = 276/626 (45%), Positives = 430/626 (69%), Gaps = 4/626 (0%)

Query  1    MDSKLLDYYNRELAYLREMGAEFAAQYPKVAGRLGMRGIDVADPYVERLMEGFAFLTSRV  60
            MD++LL+YYNREL+YLRE GAEFA+  PK+A+RLGM+G D+ADPYVER++E+F+FL++R 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFSQRMLEMVAPGYLSPTPSMAIAQLTPDSRKGDISNGFLVPRGTMMESQN  120
            QLK+DAEFPRF+QR+LE+V P Y++PTPSMA+ +L PD++ GD+++G  VPR+T   S  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  LKKTGVTCSYTTAHDVMLQPLRISDVSLGGVPADIPLGELKAGGSTAASSALRIRITCEG  180
                  +C + +++DV L PL I +V L + P+D+P  +     +   ++ALRI +   G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  ISSLSQLSLDDVM-FFLSGPDIQALKLMELLMQHRVGIIL-QSVEAKPQRQVLPDDALQQ  238
              ++S+L+    + F+L G +  A  L ELL    V+ +  ++ +   + +V  ++++ +
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  239  EGFSTEQALLPDDLRNFDGYRLLQEYFAFPARFQFISLRQLAPFLQRCDNALSFDIVILL  298
            EG+   Q+LLP     F+G  LL+E+FA P RF F++   L++ LQ+ +  ++ +IVILL
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVA-EIVILL  299

Query  299  DKADAA-LESVVDSAHLALHCTPVINLFPKTAERLKVSDSQHEYHLVVDNIRPLDYEIHS  357
            ++  +  L    D+A+++L CTPVINLFP+T+ R+ V++S  E HLVVD  RPLDYE+ S
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  358  VKRLFASVEGQREEQIFRPFWSTFSHDGGDYGAYFSLRREQRTLSEHALRYGTRTGYIGS  417
            V+ + +         IFRP+  T ++D G+ G YFSLRRE R  SE A RYGTRT Y GS
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGS  419

Query  418  EVFLSLVDQNHTPWNSDIRYLSAEVMCTSRDLPLMLLQQEQANFVMPDSIPVGQLKLCKG  477
            EVFLSLVDQ+++P   ++R ++   M T+RDLP ++ ++ + ++ +  +IPV+ + L + 
Sbjct  420  EVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRP  479

Query  478  PTPPRPALAEGLSAWRLISHLQMNYLSLMDSSDGEGAAALRQMLSLYASLAETPLTRQID  537
            P PP+P+LAE   AWRLI +L  NYL+L D  +  G+ ALR++L+L+ +  ++P +RQ+ 
Sbjct  480  PRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVR  539

Query  538  GIRHCNLKAVHRRVPEPGPVVFARGVSIALEVDEQAFSGASPWLFGSVLERVFSRLVALN  597
            ++  C+  +V RR+P +G +V++RGVS  L VDE++FSG SP LFG VLE+ ++R V++N
Sbjct  540  SLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSIN  599

Query  598  SFTEFTLSSQQRGEVGYWPPRMGKKA  623
            +F++ TL S QRG+V  WP R G+++
Sbjct  600  TFSQMTLHSMQRGHVMTWPVRTGQRG  625

147) PANA5342_1740 in NC_016816


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  433 bits (1629),  Expect = 2e-122, Method: Compositional matrix adjust.
 Identities = 276/626 (45%), Positives = 430/626 (69%), Gaps = 4/626 (0%)

Query  1    MDSKLLDYYNRELAYLREMGAEFAAQYPKVAGRLGMRGIDVADPYVERLMEGFAFLTSRV  60
            MD++LL+YYNREL+YLRE GAEFA+  PK+A+RLGM+G D+ADPYVER++E+F+FL++R 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFSQRMLEMVAPGYLSPTPSMAIAQLTPDSRKGDISNGFLVPRGTMMESQN  120
            QLK+DAEFPRF+QR+LE+V P Y++PTPSMA+ +L PD++ GD+++G  VPR+T   S  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  LKKTGVTCSYTTAHDVMLQPLRISDVSLGGVPADIPLGELKAGGSTAASSALRIRITCEG  180
                  +C + +++DV L PL I +V L + P+D+P  +     +   ++ALRI +   G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  ISSLSQLSLDDVM-FFLSGPDIQALKLMELLMQHRVGIIL-QSVEAKPQRQVLPDDALQQ  238
              ++S+L+    + F+L G +  A  L ELL    V+ +  ++ +   + +V  ++++ +
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  239  EGFSTEQALLPDDLRNFDGYRLLQEYFAFPARFQFISLRQLAPFLQRCDNALSFDIVILL  298
            EG+   Q+LLP     F+G  LL+E+FA P RF F++   L++ LQ+ +  ++ +IVILL
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVA-EIVILL  299

Query  299  DKADAA-LESVVDSAHLALHCTPVINLFPKTAERLKVSDSQHEYHLVVDNIRPLDYEIHS  357
            ++  +  L    D+A+++L CTPVINLFP+T+ R+ V++S  E HLVVD  RPLDYE+ S
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  358  VKRLFASVEGQREEQIFRPFWSTFSHDGGDYGAYFSLRREQRTLSEHALRYGTRTGYIGS  417
            V+ + +         IFRP+  T ++D G+ G YFSLRRE R  SE A RYGTRT Y GS
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGS  419

Query  418  EVFLSLVDQNHTPWNSDIRYLSAEVMCTSRDLPLMLLQQEQANFVMPDSIPVGQLKLCKG  477
            EVFLSLVDQ+++P   ++R ++   M T+RDLP ++ ++ + ++ +  +IPV+ + L + 
Sbjct  420  EVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRP  479

Query  478  PTPPRPALAEGLSAWRLISHLQMNYLSLMDSSDGEGAAALRQMLSLYASLAETPLTRQID  537
            P PP+P+LAE   AWRLI +L  NYL+L D  +  G+ ALR++L+L+ +  ++P +RQ+ 
Sbjct  480  PRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVR  539

Query  538  GIRHCNLKAVHRRVPEPGPVVFARGVSIALEVDEQAFSGASPWLFGSVLERVFSRLVALN  597
            ++  C+  +V RR+P +G +V++RGVS  L VDE++FSG SP LFG VLE+ ++R V++N
Sbjct  540  SLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSIN  599

Query  598  SFTEFTLSSQQRGEVGYWPPRMGKKA  623
            +F++ TL S QRG+V  WP R G+++
Sbjct  600  TFSQMTLHSMQRGHVMTWPVRTGQRG  625

148) CTU_00850 in NC_013282


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  432 bits (1628),  Expect = 3e-122, Method: Compositional matrix adjust.
 Identities = 283/628 (46%), Positives = 430/628 (69%), Gaps = 6/628 (0%)

Query  1    MDSKLLEYYNRELAYLREMGAEFAERYPKVAGRLGMRGIEIADPYIERLMEGFAFLTSRV  60
            MD++LLEYYNREL+YLRE GAEFA   PK+A+RLGM+G +IADPY+ER++E+F+FL++R 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFSQRLLEMLAPNYLAPTPSMAIAELHPDSAKGDLSNGFVVPRGTMMDSQL  120
            QLK+DAEFPRF+QRLLE++ PNY++PTPSMA+  L PD+  GDL++G  VPR+T   S +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  LKKNGVTCSYATAHDVRLLPLHISLVELGGVPADAPLSQLGLSQRGAVS-ALRVRIACDG  179
               +  +C + +++DV L PL I  V L + P+D P  +  L+    V+ ALR+ +   G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  180  PVLLNHL-DFDRLDFFLSGPDIQALQLLELLMEHRVGIFCQTVGPKPSRVVLD-DDALRQ  237
             + +++L +  RL F+L G +  A +L+ELL    V+ +    G   + + ++ ++++ +
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  238  EGFEADQALLPDDLRNFDGYRLLQEYFAFPARFQFLSLRGISKLLAQSGQANAFDIIILL  297
            EG+E++Q+LLP     F+G  LL+E+FA P RF F++  G+S  L Q  Q+N  +I+ILL
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGL-QKVQGNVAEIVILL  299

Query  298  DKTDTP-LERVVDKSHLAMHCTPVINLFPKIAERQKLTEGLSEYHLVVDNIRPLDYEIFS  356
            ++     L +  D +++++ CTPVINLFP+ + R  +T++++E HLVVD  RPLDYE+FS
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  357  VSKIYASEDGQRDDQIFRPFWSTWSRDGGNYGAYFSMRREQRALSEHALRYGTRTGYIGS  416
            V  + + E       IFRP+  T++ D GN G YFS+RRE R  SE A RYGTRT Y GS
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGS  419

Query  417  EAFVSLVDATHAPWRDELRYITAEVMCTSRDLP-LMLAQDMGQFVLPDSMPVRALTMRKG  475
            E F+SLVD  +AP  ++LR IT   M T+RDLP L+  ++ +++ +  ++PV ++ + + 
Sbjct  420  EVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRP  479

Query  476  PTPPRPALAEGFSTWRLISQLQMNYLSLMDAEDGEGAAALRQLLGLYARLAEAPVARQID  535
            P PP+P+LAE   +WRLI QL  NYL+L D ++  G+ ALR+LL L+    ++P +RQ+ 
Sbjct  480  PRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVR  539

Query  536  GIRHCVLEPVHRRVPEPGPIVFARGVGISMTVDEQAFSGSSPWLLGSVLERVFARLVSMN  595
            ++  C   PV RR+P +G +V++RGV+  +TVDE++FSG SP L+G VLE+ +AR VS+N
Sbjct  540  SLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSIN  599

Query  596  SFTEFTLKSQQRGEVGYWGPRMGKRALI  623
            +F++ TL S QRG+V  W  R G+R+ +
Sbjct  600  TFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

149) EcWSU1_02681 in NC_016514


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  432 bits (1625),  Expect = 5e-122, Method: Compositional matrix adjust.
 Identities = 278/631 (45%), Positives = 427/631 (68%), Gaps = 16/631 (2%)

Query  3    MESKLLEYYNRELAYLREMGAEFAERYPKVAGRLGMRGIEVADPYTERLMEGFAFLTSRV  62
            M+++LLEYYNREL+YLRE GAEFA   PK+A+RLGM+G ++ADPY ER++E+F+FL++R 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  63   QMKMDAEFPRFSQRLLEMIAPNYLAPTPSMAIAEIQPDSTRGDLSNGFKVPRGTMMDSLA  122
            Q+K+DAEFPRF+QRLLE++ PNY++PTPSMA+  + PD+  GDL++G  VPR+T   S  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  123  LKKTGVTCSYTTAHEVNLLPLKIDKVELGGVPADLPLAQLGLSQR-GINSALRIRIACDG  181
                  +C + ++++V L PL I+ V L + P+D+P  +  L+    + +ALRI +    
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITL----  176

Query  182  PQHLGHLDFD------RLEFFLSGPDIEALKLLELVMEHHAGIVCQTVSK-HPQRQLLSA  234
             + +G+L F       RL F+L G +  A  L+EL+     + +    +  + + ++   
Sbjct  177  -RTFGELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQ  235

Query  235  DALRQEGFEPDQALLPDDLRNFDGYRLLQEYFAFPARFRFISLSGLGKLIQHCENEKAFD  294
            +++ +EG+EP+Q+LLP     F+G  LL+E+FA P RF F++ +GL+  +Q  + + A +
Sbjct  236  HPVAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVA-E  294

Query  295  IFILLDKSDEQ-LERVVDASHLAMHCTPVINLFPKVAARQKLSESQHEYHLVVDNIRPLD  353
            I ILL++   + L +  DA+++++ CTPVINLFP+ ++R  +++S  E HLVVD  RPLD
Sbjct  295  IVILLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLD  354

Query  354  YEIYAVNKIFGSADGQRDDQTFRPFWSTWSGDAGNYGAYFSLRREQRVLSEHALRYGTRT  413
            YE+++V+ + G          FRP+  T++ D GN G YFSLRRE R  SE A RYGTRT
Sbjct  355  YEVFSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRT  414

Query  414  GYIGSEVFVSLVDEQHAPWQENLRYISAEVLCTSRDLP-LMLQQELGQFIMADSMPVKSL  472
             Y GSEVF+SLVD+++AP  ENLR I+   + T+RDLP L+ ++  +++ +  ++PV ++
Sbjct  415  PYTGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGV  474

Query  473  TLRKGPTPPRPALAEGFSTWRLISQLQMNYLSLMDSENEEGAAALRQLLGLYANLAETPV  532
             L + P PP+P+LAE   +WRLI QL  NYL+L D ++  G+ ALR+LL L+    ++P 
Sbjct  475  GLIRPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQ  534

Query  533  ARQVEGVRHCVLEPVHRRVPEPGPVVFARGIGITLTVDERAFSGASPWLFGSVLERLFAR  592
            +RQV ++  C   PV RR+P +G +V++RG++  LTVDE +FSG SP LFG VLE+ +AR
Sbjct  535  SRQVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIAR  594

Query  593  LVSINSFTEFTLKSQQRGEIGYWAPRMGKRA  623
             VSIN+F++ TL S QRG++  W+ R G+R+
Sbjct  595  HVSINTFSQMTLHSMQRGHVMTWPVRTGQRG  625

150) ENC_07350 in NC_021046


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  432 bits (1625),  Expect = 5e-122, Method: Compositional matrix adjust.
 Identities = 277/633 (44%), Positives = 432/633 (69%), Gaps = 16/633 (2%)

Query  1    MESKLLEYYNRELAYLREMGAEFAERYPKVAGRLGMRGIEVADPYIERLMEGFAFLTSRV  60
            M+++LLEYYNREL+YLRE GAEFA   PK+A+RLGM+G ++ADPY+ER++E+F+FL++R 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QMKMDAEFPRFSQRMLEMIAPNYLAPTPSMAIAEIQPDSSRGDLSKGFIVPRGTMMDSLA  120
            Q+K+DAEFPRF+QR+LE++ PNY++PTPSMA+  + PD+  GDL+KG  VPR+T   S  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  LKKTGVTCSYTTAHEVNLLPLKIERIELGGVPADLPLAQLGLSQR-GISSALRVRIACDG  179
                  +C + ++++V L PL IE + L + P+D+P  +  L+    +++ALR+ +    
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITL----  176

Query  180  PQHLGHLDFD------RLEFFLSGPDIEALKLLELVMEHHAGIVCQTVSK-QPQRQLLSS  232
             + +G+L F       RL F+L G +  A  L+EL+     + +    +  + + ++   
Sbjct  177  -RTFGELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQ  235

Query  233  DALRQEGFNADQALLPDDLRNFDGYRLLQEYFAFPARFRFISLSGLGKLIQRCEDEKAFD  292
            +++ +EG++++Q+LLP     F+G  LL+E+FA P RF F++ +GL+  +Q+ +++ A +
Sbjct  236  HPVAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVA-E  294

Query  293  IFILLDK-SDDQLERVVDASHLALHCTPVINLFPKVAARQKLSESQHEYHLVVDNIRPLD  351
            I ILL++ + D L +  DA++++L CTPVINLFP+ ++R  +++S  E HLVVD  RPLD
Sbjct  295  IVILLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLD  354

Query  352  YEIYAVKKIYASADGQRDDQTFRPFWSTWSGDAGNYGAYFSLRREQRVLSEHALRYGTRT  411
            YE+++V+ + +          FRP+  T++ D GN G YFSLRRE R  SE A RYGTRT
Sbjct  355  YEVFSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRT  414

Query  412  GYIGSEVFVSLVDAQHAPWQENLRYISAEVLCTSRDLP-LMLQQELGQFIMADSMPVKAL  470
             Y GSEVF+SLVD ++AP  ENLR I+   + T+RDLP L+ ++  +++ +  ++PV ++
Sbjct  415  PYTGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGV  474

Query  471  TLRKGPTPPRPALAEGFSTWRLISQLQMNYLSLMDSENEEGAAALRQLLGLYANLAETPV  530
             L + P PP+P+LAE   +WRLI QL  NYL+L D ++  G+ ALR+LL L+    ++P 
Sbjct  475  GLIRPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQ  534

Query  531  ARQVDGVRHCVLEPVHRRVPEPGPVVFARGIGITLTVDERAFSGASPWLFGSVLERLFAR  590
            +RQV ++  C   PV RR+P +G +V++RG++  LTVDE +FSG SP LFG VLE+ +AR
Sbjct  535  SRQVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIAR  594

Query  591  LVSINSFTEFTLKSQQRGEIGYWAPRMGKRALV  623
             VSIN+F++ TL S QRG++  W+ R G+R+ V
Sbjct  595  HVSINTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

151) Bcep18194_B1584 in NC_007511


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  429 bits (1617),  Expect = 2e-121, Method: Compositional matrix adjust.
 Identities = 282/627 (45%), Positives = 438/627 (70%), Gaps = 4/627 (0%)

Query  1    MDTRLLDYYNRELAYLRELGGEFAQQFPKVAARLRLNESGPPDPYVERLLEGFSFLTARV  60
            MD RLL+YYNREL+YLRE G+EFA   PK+AARL ++ ++ +DPYVER++E+FSFL+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFTQALLDAVYPGYIAPLPSMAIVRFAPMLNEGSLAQGWRLPAGTALRARP  120
            QLK+DAEFPRFTQ LL+ V P Y++P PSMA+V++ P  +EG LA+G  +P +TA+ +  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  AASEQTACEFRTAHDLTLWPLELTDATVTGAPSWLP--RGAFAARQDVRGALRIRLKVRG  178
            + +E+TAC+FR+++D+TLWPL + +  +T+AP+ +P  +  +++  +V GALRI L+  G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  GAKLSQLP-LDRLTFHLAGPERDalhlleliaahalGVVCHDPAQPPRWLHTLDADEIVH  237
               +S+L+   RL F L G ER A HL+EL+ + A++ +  +P++    L+    + + H
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  238  EGFDPAQAILPDDGRSFHGYRLLREYFAFPARFLFFSIgglraalaraTGDEFELTVLFD  297
            EG++P+Q++LP     FHG  LL+E+FA P RF FF+  GL A+L +  G+  E+ +L++
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  298  RHDAA-LEAAVSAKHLALNCTPAVNLFARRADRIPLQPGAREHHVVVDRSRPLDYEVYAV  356
            R  +  L     A +++L CTP +NLF+R + RI +  +  E+H+VVDR+RPLDYEV++V
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  357  QRLASEQRDDGQSREFRPFHASFATDDGNHGAYYMVRREPRLVSSQARANGTRTGYVGSE  416
            Q + + + +  +   FRP+  +   D+GNHG Y+ +RREPR  S  AR  GTRT Y GSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  417  TYVSLVDSQCAPYDETMRYLAADTLCTNRDLVLLQPPGDANTFTLRVSAPVESIVAIRGP  476
             ++SLVD + APY E +R ++  ++ TNRDL  L P  + + +T+  + PV ++  IR P
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  477  SRPRPPIADAQTAWRLIRHLGLARHTLTDLDDDEGAHALRELLGLHADPADAAMRRQIDG  536
              P+PP+A+ + AWRLIR+L++    L+DLD+  G++ALR+LL L   + D++  RQ+ +
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  537  VLRVAFSPVFRRLPASGPLMFGRGVQVDVTVDDHAFSGDSPFLLGAVLEQFFARHVSINA  596
            ++    +PV RRLP+SG L++GRGV  ++TVD+++FSG SP+L+G VLE+++ARHVSIN+
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  597  FAECVLTSAQRGQLAHWPARIGRRPAI  623
            F++  L S QRG++  WP R G+R ++
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

152) GEM_4206 in NC_018514


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  424 bits (1597),  Expect = 8e-120, Method: Compositional matrix adjust.
 Identities = 283/627 (46%), Positives = 438/627 (70%), Gaps = 4/627 (0%)

Query  1    MDTRLLDYYNRELAYLRELGGEFAQQFPKVAARLRLHESGPPDPYVERLLEGFSFLTARV  60
            MD RLL+YYNREL+YLRE G+EFA   PK+AARL ++ ++ +DPYVER++E+FSFL+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFTQALLDAVYPGYLAPLPSMAIVRFAPMLNEGSLAQGWRLPAGTALRARP  120
            QLK+DAEFPRFTQ LL+ V P Y++P PSMA+V++ P  +EG LA+G  +P +TA+ +  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  AASEQTACEFRTAHDLTLWPLELTEATVTGAPSWLP--RGVVPARQDVRGALRIRLKARG  178
            + +E+TAC+FR+++D+TLWPL + E  +T+AP+ +P  +  +P+  +V GALRI L++ G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  GAKLSQLP-LERLTFHLAGPERDalhlleliaahalGVVCHDPGQAPRWLHTLDADAIVH  237
               +S+L+   RL F L G ER A HL+EL+ + A++ +  +PG+    L+    +++ H
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  238  EGFDPAQAILPDEGRSFHGYRLLREYFAFPARFLFFSISGLRAALTRATGDECELTVlfd  297
            EG++P+Q++LP     FHG  LL+E+FA P RF FF+ +GL A+L +  G+  E+ +L++
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  298  radaa-leaavdarhlaLNCTPAVNLFARRGDRIPLQPGAREHHVVVDRSRPLDHEVYAV  356
            R  +  L    DA +++L CTP +NLF+R   RI +  +  E+H+VVDR+RPLD EV++V
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  357  QRLASVQRDDGQSREFRPFHASFARDDGNYGAYYTVRREPRLVSAQARANGTRTGYVGSE  416
            Q + +++ +  +   FRP+  +   D+GN G Y+++RREPR  S  AR  GTRT Y GSE
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGSE  420

Query  417  TYVSLVDSQCAPYDETMRYLSVDTLCTNRDLVLLQPPGDANTFTLRISAPVERIVAIRGP  476
             ++SLVD + APY E +R ++V ++ TNRDL  L P  + + +T+  + PV  +  IR P
Sbjct  421  VFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRPP  480

Query  477  SRPRPPIADTQSAWRLIRHLGLARQTMTDLDDDEGAHALRELLGLHADPADAAMRRQIDG  536
              P+PP+A+ + AWRLIR+L++    ++DLD+  G++ALR+LL L   + D++  RQ+ +
Sbjct  481  RPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVRS  540

Query  537  VRRVAFSPVFRRLPALGPLMFGRGVQVDVTVDDHAFSGDSPFLLGAVLEQFFARHVSINA  596
            +     +PV RRLP+ G L++GRGV  ++TVD+++FSG SP+L+G VLE+++ARHVSIN+
Sbjct  541  LIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSINT  600

Query  597  FAECVLTSTQRGTLAHWPARIGRRPAI  623
            F++  L S QRG +  WP R G+R ++
Sbjct  601  FSQMTLHSMQRGHVMTWPVRTGQRGSV  627

153) W5S_2424 in NC_017845


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  424 bits (1596),  Expect = 8e-120, Method: Compositional matrix adjust.
 Identities = 279/629 (45%), Positives = 430/629 (69%), Gaps = 7/629 (1%)

Query  1    MDSKLLDYYNRELAYLHEMGAEFAAHYPKVAGRLGMRGIDVADPYVERMLEGFAFLTSRV  60
            MD++LL+YYNREL+YL+E GAEFA+  PK+A+RLGM+G D+ADPYVERM+E+F+FL++R 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFSQRMLEMIAPGYLSPTPSMAIAKLTPDTQKGDISNGFLVPRGTMMENQN  120
            QLK+DAEFPRF+QR+LE++ P Y++PTPSMA+ KL PDTQ GD+++G  VPR+T   +  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  LKKSGVTCSYTTAHDVMLQPLCLSDVSLGGVPADIPlgel-klsglgaasalRIRIECEG  179
                  +C + +++DV L PL + +V L + P+D+P  +    + +  A+ALRI +   G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  180  VPSLDQLK-LDDVILYLSGPDIQALKLLELLMQHRVGILLQSVE--EKPLRRVLSDDALQ  236
              ++ +L     + +YL G +  A  L+ELL    V+ L       +  L   L ++++ 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNL-QHPVA  239

Query  237  QEGFAPEQALLPDDLRNFDGYRLLQEYFAFPARFQFISLRQLAPFIRCCGNARIFEIIIL  296
            +EG+ P Q+LLP     F+G  LL+E+FA P RF F++   L++ ++   ++ + EI+IL
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKV-QGNVAEIVIL  298

Query  297  LDKADSA-LESVVDASHLALHCTPVINLFPKTAERLKISDSQHEYHLVVDNIRPLDYEVH  355
            L++  +  L    DA++++L CTPVINLFP+T+ R+ +++S  E HLVVD  RPLDYEV 
Sbjct  299  LNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVF  358

Query  356  SVQRLFATVEGKREEQIFRSFWSTFSGDGSDYGAYFSLRREQRTLSEQAQRYGTRTGYIG  415
            SVQ + +         IFR++  T + D ++ G YFSLRRE R  SE A+RYGTRT Y G
Sbjct  359  SVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTG  418

Query  416  SEVFLSLVDEHHTPWRDDLRYLSADVMCTSRDLPLMLLQQDQGNFVMPDSIPVGPLTLCK  475
            SEVFLSLVD+H++P  ++LR ++   M T+RDLP ++ +++++++ +  +IPV+ + L +
Sbjct  419  SEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIR  478

Query  476  GPTPPRPALAEGLSSWRLISHLQMNYLSLMDCAGGEGAAALRQLLSLYANLADAPVSRQI  535
             P PP+P+LAE   +WRLI +L  NYL+L D     G+ ALR+LL+L+    D+P SRQ+
Sbjct  479  PPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQV  538

Query  536  EAIRHCQLSTVNRRVPEPGPVVFARGVSITLEVDEQAFSGASPWLFGSVLERVFSRLVAL  595
             ++  C+ + V RR+P +G +V++RGVS  L VDE++FSG SP LFG VLE+ ++R V++
Sbjct  539  RSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSI  598

Query  596  NSFTEFTLNSQQRGEVGYWPPRMGKKALI  624
            N+F++ TL+S QRG+V  WP R G+++ +
Sbjct  599  NTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

154) Pecwa_2451 in NC_013421


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  422 bits (1589),  Expect = 3e-119, Method: Compositional matrix adjust.
 Identities = 279/629 (45%), Positives = 429/629 (69%), Gaps = 7/629 (1%)

Query  1    MDSKLLDYYNRELAYLHEMGAEFAAHYPKVAGRLGMRGIDVADPYVERMLEGFAFLTSRV  60
            MD++LL+YYNREL+YL+E GAEFA+  PK+A+RLGM+G D+ADPYVERM+E+F+FL++R 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFSQRMLEMIAPGYLSPTPSMAIAKLTPDTQKGDISNGFLVPRGTMMENQN  120
            QLK+DAEFPRF+QR+LE++ P Y++PTPSMA+ KL PDTQ GD+++G  VPR+T   +  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  LKKSGVTCSYTTAHDVMLQPLCISDVSLGGVPADIPlgel-klsglgaasalRIRIECEG  179
                  +C + +++DV L PL I +V L + P+D+P  +    + +  A+ALRI +   G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  180  VPSLDQLK-LDDVILYLSGPDIQALKLLELLMQHRVGILLQSVE--EKPLRRVLSDDALQ  236
              ++ +L     + +YL G +  A  L+ELL    V+ L       +  L   L ++++ 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNL-QHPVA  239

Query  237  QEGFAPEQALLPDDLRNFDGYRLLQEYFAFPARFQFISLRQLAPFIRCCGNARIFEIIIL  296
            +EG+ P Q+LLP     F+G  LL+E+FA P RF F++   L++ ++   ++ + EI+IL
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKV-QGNVAEIVIL  298

Query  297  LDKADSA-LESVVDASHLALHCTPVINLFPKTAERLKISDSQHEYHLVVDNIRPLDYEVH  355
            L++  +  L    DA++++L CTPVINLFP+T+ R+ +++S  E HLVVD  RPLDYEV 
Sbjct  299  LNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVF  358

Query  356  SVQRLFATVEGKREEQIFRSFWSTFSGDGSDYGAYFSLRREQRTLSEQAQRCGTRTGYIG  415
            SVQ + +         IFR++  T + D ++ G YFSLRRE R  SE A+R GTRT Y G
Sbjct  359  SVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTG  418

Query  416  SEVFLSLVDEHHTPWRDDLRYLSADVMCTSRDLPLMLLQQDQGNFVMPDSIPVGPLTLCK  475
            SEVFLSLVD+H++P  ++LR ++   M T+RDLP ++ +++++++ +  +IPV+ + L +
Sbjct  419  SEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIR  478

Query  476  GPTPPRPALAEGLSSWRLISHLQMNYLSLMDCAGGEGAAALRQLLSLYANLADAPVSRQI  535
             P PP+P+LAE   +WRLI +L  NYL+L D     G+ ALR+LL+L+    D+P SRQ+
Sbjct  479  PPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQV  538

Query  536  EAIRHCQLSTVNRRVPEPGPVVFARGVSITLEVDEQAFSGASPWLFGSVLERVFSRLVAL  595
             ++  C+ + V RR+P +G +V++RGVS  L VDE++FSG SP LFG VLE+ ++R V++
Sbjct  539  RSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSI  598

Query  596  NSFTEFTLNSQQRGEVGYWPPRMGKKALI  624
            N+F++ TL+S QRG+V  WP R G+++ +
Sbjct  599  NTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

155) impG2 in NC_016830


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  419 bits (1576),  Expect = 4e-118, Method: Compositional matrix adjust.
 Identities = 259/630 (42%), Positives = 430/630 (69%), Gaps = 14/630 (2%)

Query  1    MNPRLLELYNQELHHVRESAAEFAKEYPKIASRLTLSGMDCADPYVERLLEGFAYLTARV  60
            M+PRLLE YN+EL  +RE++AEFA   PKIA+RL + G D ADPYVER++E+F++L+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKLDAEYPTFTHNLLEIAYPHYLAPTPSMTVVQLQADPDEGSLSSGFPLPRDTVLRAAL  120
            QLK+DAE+P FT+ LLE+  P+Y++PTPSM+VV+L +D +EG L+ G  +PRDT + +++
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  GRETQTCCEYRTAHAVTLWPLQVSQAEYFGNPSAV--LGRLAASEPKAKAGLRITLRTGA  178
                +T C++R+++ VTLWPL + +    + P+ +  L R  +++    ++LRITLRT +
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  ELPFNSLA-LDNLPLYLSGADEQPFRLYEQLLGNTCAVFARKPG---GDWVERLPQDALR  234
            EL+F+ LA    LP+YL G +  + +L+E L  ++ A +A  PG   G+    L Q+++ 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNL-QHPVA  239

Query  235  SRGFDDADAALPVVPRAFQGYRLLQEYFALPHRFLFVDFTQLSRAVKRCDGQELELIVLF  294
              G++ +++ LP+    F+G  LL+E+FA P+RF F   T LS ++++ +G+  E+++L+
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  295  DRHDPS-LEGSVGASQFLPFCTPAINLFPKRLDRIHLSDRVNEHHVIADRTRPMDFEVHS  353
            +R  P  L    +A+QF  FCTP INLFP+   RI++++ V E+H++ DRTRP+D+EV S
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  354  LNGLTGHGTGPEQP--FLPFYAVRDPSRYGRDQAYYTVRREPRVLSSDQRRNGPRSTYIG  411
            ++ + G  +   +   F P+Y  R+    G +  Y+++RREPR  S   RR G R+ Y G
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDE-GNHGRYFSLRREPRRSSESARRYGTRTPYTG  418

Query  412  SETFVSLVDSQQAPYRHDLRQLGVTALCTNRDLPLFMSVGNGKTDFTLADSAPVGAVRCV  471
            SE F+SLVD ++APY ++LR++ VTA+ TNRDLP +++  NG+ D+T+  + PV++V  +
Sbjct  419  SEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIP-RNGRDDLTVDAAIPVAGVGLI  477

Query  472  AGPSRPRASHAHDAKAWRLISQLSLNYLSLSEQGQ--GAAALRELLRLYGDSNDAALQLQ  529
              P  P+++ A+   AWRLI QLS+NYL+L++ ++  G+ ALR+LL L+  ++D++   Q
Sbjct  478  RPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQ  537

Query  530  IEGLREVSSKACTRRLPMPGPIVFGRGLEITLEFDENAFRGTGVFLLGAVFERFLARYVS  589
            + +L    + + TRRLP +G +V+GRG+   L  DE++F G + +L+G V+E+++AR VS
Sbjct  538  VRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVS  597

Query  590  INSFTETVIRTTERGEIMRWKAKPGRRPTL  619
            IN+F++  +++ +RG++M W  + G+R ++
Sbjct  598  INTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

156) tssF1 in NC_017911


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  418 bits (1575),  Expect = 4e-118, Method: Compositional matrix adjust.
 Identities = 258/630 (41%), Positives = 428/630 (68%), Gaps = 14/630 (2%)

Query  1    MNPRLLELYNQELHHVRESAAEFAKEYPKIASRLTLSGMDCADPYVERLLEGFAYLTARV  60
            M+PRLLE YN+EL  +RE++AEFA   PKIA+RL + G D ADPYVER++E+F++L+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKLDAEYPTFTHNLLEIAYPHYLAPTPSMTVVQLQTDPDEGSLAGGFPLPRDTVLRAAL  120
            QLK+DAE+P FT+ LLE+  P+Y++PTPSM+VV+L  D +EG LA G  +PRDT + +++
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  GRETQTCCEYRTAHPVTLWPLQVSNAEYFGNPAAV--LGRLAASEPKAKAGLRLTLRTGA  178
                +T C++R+++ VTLWPL + +    + P+ +  L R  +++    ++LR+TLRT +
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  ELPFNSL-DLDTLPLYLSGADEQPFRLYEQLLGNACAVFARQPG---GDWVERLPQGALR  234
            EL+F+ L +   LP+YL G +  + +L+E L  +A A +A +PG   G+    L + ++ 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQH-PVA  239

Query  235  SQGFDDADAAMPVVARAFQGYRLLQEYFALPHRFLFVEFAELRRAVKRCDGQELELIVLF  294
             +G++ +++ +P+    F+G  LL+E+FA P+RF F   + L  ++++ +G+  E+++L+
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  295  DRHEPS-LEGSVGAAQFLPFCTPAINLFPKRVDRIHLSDRVNEHHVIADRTRPMDFEIHS  353
            +R  P  L    +AAQF  FCTP INLFP+   RI++++ V E+H++ DRTRP+D+E+ S
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  354  LSGITGHGTGPEQP--FLPFYAVRDPSRYGRDQAYYSVRREPRVLSSDQRRNGPRSTYVG  411
            +  + G  +   +   F P+Y  R+    G +  Y+S+RREPR  S   RR G R+ Y G
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDE-GNHGRYFSLRREPRRSSESARRYGTRTPYTG  418

Query  412  SETFVSLVDSRQAPYRHDLRQLGVTALCTNRDLPLFMSVGNGKTDFTLADSAPVLAVRCV  471
            SE F+SLVD ++APY ++LR++ VTA+ TNRDLP +++  NG+ D+T+  + PV +V  +
Sbjct  419  SEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIP-RNGRDDLTVDAAIPVAGVGLI  477

Query  472  AGPSRPRASHAHDAKAWRLISQLSLNYLSLSEQGQ--GAGALRELLRLYGDSNDAALQLQ  529
              P  P+++ A+   AWRLI QLS+NYL+L++ ++  G+ ALR+LL L+  ++D++   Q
Sbjct  478  RPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQ  537

Query  530  IEGLREVSSKAVTRRLPMPGPIVFGRGLEITLEFDENAFRGTGVFLLGAVLERFLARYVS  589
            + +L    + +VTRRLP +G +V+GRG+   L  DE++F G + +L+G VLE+++AR VS
Sbjct  538  VRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVS  597

Query  590  INSFTETVIRTTERGEIMRWKAKPGRRPTL  619
            IN+F++  +++ +RG++M W  + G+R ++
Sbjct  598  INTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

157) AvCA6_26630 in NC_021150


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  418 bits (1574),  Expect = 5e-118, Method: Compositional matrix adjust.
 Identities = 291/627 (47%), Positives = 437/627 (70%), Gaps = 13/627 (2%)

Query  1    MDARLLDYYNRELGYLRELGAEFAERFPKVAGRLGMHGIEIADPYVERLLEGFSFLTARI  60
            MD+RLL+YYNREL+YLRE GAEFA   PK+A+RLGM+G +IADPYVER++E+FSFL+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRLSQHLLDVIHPNYSAPMPAMAIVRLQPSLNEGSLANGFTLPAGTALHANL  120
            QLK+DAEFPR++Q+LL+V++PNY +P P+MA+V+L P  +EG LA+G T+P +TA+ + +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  AHGEQTVCEFRTGHALTLWPLELDGVHYGRVPTDLPa-----gayrqraraalrirlrit  175
            ++GE+T C+FR+++ +TLWPL ++ V+    P D+PA      +  + A A       + 
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  176  agQRCDSLALERLEFHLAGPEQRALRLLELIAGHSVAVLCREAGP-DGAWGTPLDAACVR  234
                 +  +  RL F L G E+ A +L+EL+   +VA L  E+G  DG     L+ + V 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHP-VA  239

Query  235  HEGFSASQALLPDDGRTFQGYRLLQEYFACPARFLFFSVgglrralqglrgerfellllf  294
            HEG+ ++Q+LLP     F+G  LL+E+FACP RF FF+  GL  +LQ ++G+  E+++L+
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  295  dqddaa-leRLVETDDLALHCTPVVNLFAKRADRVLVSPRSRDYHLVVDRTRALDYEVHS  353
            ++  +  L +  ++ +++L CTPV+NLF++ + R+ V+    + HLVVDRTR+LDYEV S
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  354  VTRMSG-HGSGSEAQEFRPFYASFGADGRDHGAYYALRREPRLLSEQARLHGSRTGYVGS  412
            V  + G ++  +    FRP+Y +   D  +HG Y++LRREPR  SE AR  G+RT Y GS
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGS  419

Query  413  EIFVSLVDQHEAPFGAALRHLVVETLCTNRdlplllpldgdsdfslAVSAPVGRVKVLRG  472
            E+F+SLVDQHEAP+   LRH+ V ++ TNRDLP L+P +G  D+++  + PV+ V ++R 
Sbjct  420  EVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRP  479

Query  473  PTRPRPSLAEGAQTWKLISHLGLNHRLMTELDGERGAAMLRQLLALYLDDAESGLRRQVE  532
            P  P+P+LAE   +W+LI +L++N   +++LD   G+  LR+LL L++   +S   RQV 
Sbjct  480  PRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVR  539

Query  533  SLRRVAC--SPVFRRLPQPGPLMHGRGVQVAVTLDEQAFSGDSPFLFGAVLEQFFARHVA  590
            SL  ++C  +PV RRLP +G L+ GRGV   +T+DE++FSG SP+LFG VLE+++ARHV+
Sbjct  540  SL--IGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVS  597

Query  591  INLFSELTLHSLQRGQVARWAPRLGAR  617
            IN FS++TLHS+QRG+V  W+ R G R
Sbjct  598  INTFSQMTLHSMQRGHVMTWPVRTGQR  624

158) AvCA_26630 in NC_021149


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  418 bits (1574),  Expect = 5e-118, Method: Compositional matrix adjust.
 Identities = 291/627 (47%), Positives = 437/627 (70%), Gaps = 13/627 (2%)

Query  1    MDARLLDYYNRELGYLRELGAEFAERFPKVAGRLGMHGIEIADPYVERLLEGFSFLTARI  60
            MD+RLL+YYNREL+YLRE GAEFA   PK+A+RLGM+G +IADPYVER++E+FSFL+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRLSQHLLDVIHPNYSAPMPAMAIVRLQPSLNEGSLANGFTLPAGTALHANL  120
            QLK+DAEFPR++Q+LL+V++PNY +P P+MA+V+L P  +EG LA+G T+P +TA+ + +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  AHGEQTVCEFRTGHALTLWPLELDGVHYGRVPTDLPa-----gayrqraraalrirlrit  175
            ++GE+T C+FR+++ +TLWPL ++ V+    P D+PA      +  + A A       + 
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  176  agQRCDSLALERLEFHLAGPEQRALRLLELIAGHSVAVLCREAGP-DGAWGTPLDAACVR  234
                 +  +  RL F L G E+ A +L+EL+   +VA L  E+G  DG     L+ + V 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHP-VA  239

Query  235  HEGFSASQALLPDDGRTFQGYRLLQEYFACPARFLFFSVgglrralqglrgerfellllf  294
            HEG+ ++Q+LLP     F+G  LL+E+FACP RF FF+  GL  +LQ ++G+  E+++L+
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  295  dqddaa-leRLVETDDLALHCTPVVNLFAKRADRVLVSPRSRDYHLVVDRTRALDYEVHS  353
            ++  +  L +  ++ +++L CTPV+NLF++ + R+ V+    + HLVVDRTR+LDYEV S
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  354  VTRMSG-HGSGSEAQEFRPFYASFGADGRDHGAYYALRREPRLLSEQARLHGSRTGYVGS  412
            V  + G ++  +    FRP+Y +   D  +HG Y++LRREPR  SE AR  G+RT Y GS
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGS  419

Query  413  EIFVSLVDQHEAPFGAALRHLVVETLCTNRdlplllpldgdsdfslAVSAPVGRVKVLRG  472
            E+F+SLVDQHEAP+   LRH+ V ++ TNRDLP L+P +G  D+++  + PV+ V ++R 
Sbjct  420  EVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRP  479

Query  473  PTRPRPSLAEGAQTWKLISHLGLNHRLMTELDGERGAAMLRQLLALYLDDAESGLRRQVE  532
            P  P+P+LAE   +W+LI +L++N   +++LD   G+  LR+LL L++   +S   RQV 
Sbjct  480  PRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVR  539

Query  533  SLRRVAC--SPVFRRLPQPGPLMHGRGVQVAVTLDEQAFSGDSPFLFGAVLEQFFARHVA  590
            SL  ++C  +PV RRLP +G L+ GRGV   +T+DE++FSG SP+LFG VLE+++ARHV+
Sbjct  540  SL--IGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVS  597

Query  591  INLFSELTLHSLQRGQVARWAPRLGAR  617
            IN FS++TLHS+QRG+V  W+ R G R
Sbjct  598  INTFSQMTLHSMQRGHVMTWPVRTGQR  624

159) Avin_26630 in NC_012560


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  418 bits (1574),  Expect = 5e-118, Method: Compositional matrix adjust.
 Identities = 291/627 (47%), Positives = 437/627 (70%), Gaps = 13/627 (2%)

Query  1    MDARLLDYYNRELGYLRELGAEFAERFPKVAGRLGMHGIEIADPYVERLLEGFSFLTARI  60
            MD+RLL+YYNREL+YLRE GAEFA   PK+A+RLGM+G +IADPYVER++E+FSFL+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRLSQHLLDVIHPNYSAPMPAMAIVRLQPSLNEGSLANGFTLPAGTALHANL  120
            QLK+DAEFPR++Q+LL+V++PNY +P P+MA+V+L P  +EG LA+G T+P +TA+ + +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  AHGEQTVCEFRTGHALTLWPLELDGVHYGRVPTDLPa-----gayrqraraalrirlrit  175
            ++GE+T C+FR+++ +TLWPL ++ V+    P D+PA      +  + A A       + 
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  176  agQRCDSLALERLEFHLAGPEQRALRLLELIAGHSVAVLCREAGP-DGAWGTPLDAACVR  234
                 +  +  RL F L G E+ A +L+EL+   +VA L  E+G  DG     L+ + V 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHP-VA  239

Query  235  HEGFSASQALLPDDGRTFQGYRLLQEYFACPARFLFFSVgglrralqglrgerfellllf  294
            HEG+ ++Q+LLP     F+G  LL+E+FACP RF FF+  GL  +LQ ++G+  E+++L+
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  295  dqddaa-leRLVETDDLALHCTPVVNLFAKRADRVLVSPRSRDYHLVVDRTRALDYEVHS  353
            ++  +  L +  ++ +++L CTPV+NLF++ + R+ V+    + HLVVDRTR+LDYEV S
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  354  VTRMSG-HGSGSEAQEFRPFYASFGADGRDHGAYYALRREPRLLSEQARLHGSRTGYVGS  412
            V  + G ++  +    FRP+Y +   D  +HG Y++LRREPR  SE AR  G+RT Y GS
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGS  419

Query  413  EIFVSLVDQHEAPFGAALRHLVVETLCTNRdlplllpldgdsdfslAVSAPVGRVKVLRG  472
            E+F+SLVDQHEAP+   LRH+ V ++ TNRDLP L+P +G  D+++  + PV+ V ++R 
Sbjct  420  EVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRP  479

Query  473  PTRPRPSLAEGAQTWKLISHLGLNHRLMTELDGERGAAMLRQLLALYLDDAESGLRRQVE  532
            P  P+P+LAE   +W+LI +L++N   +++LD   G+  LR+LL L++   +S   RQV 
Sbjct  480  PRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVR  539

Query  533  SLRRVAC--SPVFRRLPQPGPLMHGRGVQVAVTLDEQAFSGDSPFLFGAVLEQFFARHVA  590
            SL  ++C  +PV RRLP +G L+ GRGV   +T+DE++FSG SP+LFG VLE+++ARHV+
Sbjct  540  SL--IGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVS  597

Query  591  INLFSELTLHSLQRGQVARWAPRLGAR  617
            IN FS++TLHS+QRG+V  W+ R G R
Sbjct  598  INTFSQMTLHSMQRGHVMTWPVRTGQR  624

160) PSEBR_a5564 in NC_015379


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  418 bits (1574),  Expect = 5e-118, Method: Compositional matrix adjust.
 Identities = 259/630 (42%), Positives = 430/630 (69%), Gaps = 14/630 (2%)

Query  1    MNPRLLELYNQELHHVRESAAEFAKEYPKIASRLTLSGMDCADPYVERLLEGFAYLTARV  60
            M+PRLLE YN+EL  +RE++AEFA   PKIA+RL + G D ADPYVER++E+F++L+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKLDAEYPTFTHNLLEIAYPHYLAPTPSMTVVQLQADPDEGSLSSGFPLPRDTVLRAAL  120
            QLK+DAE+P FT+ LLE+  P+Y++PTPSM+VV+L +D +EG L+ G  +PRDT + +++
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  GRETQTCCEYRTAHAVTLWPLQVSQAEYFGNPSAV--LGRLAASEPKAKAGLRLTLRTGA  178
                +T C++R+++ VTLWPL + +    + P+ +  L R  +++    ++LR+TLRT +
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  ELPFNSLA-LDNLPLYLSGADEQPFRLYEQLLGNACAVFARKPG---GDWVERLPQDALR  234
            EL+F+ LA    LP+YL G +  + +L+E L  +A A +A  PG   G+    L Q+++ 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNL-QHPVA  239

Query  235  SRGFDDADAALPVVPRAFQGYRLLQEYFALPHRFLFVDFTQLSRAVKRCDGQELELIVLF  294
              G++ +++ LP+    F+G  LL+E+FA P+RF F   T LS ++++ +G+  E+++L+
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  295  DRHDPS-LEGSVGASQFLPFCTPAINLFPKRLDRIHLSDRVNEHHVIADRTRPMDFEVHS  353
            +R  P  L    +A+QF  FCTP INLFP+   RI++++ V E+H++ DRTRP+D+EV S
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  354  LNGLTGHGTGPEQP--FLPFYAVRDPSRYGRDQAYYTVRREPRVLSSDQRRNGPRSTYIG  411
            ++ + G  +   +   F P+Y  R+    G +  Y+++RREPR  S   RR G R+ Y G
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDE-GNHGRYFSLRREPRRSSESARRYGTRTPYTG  418

Query  412  SETFVSLVDSQQAPYRHDLRQLGVTALCTNRDLPLFMSVGNGKTDFTLADSAPVGAVRCV  471
            SE F+SLVD ++APY ++LR++ VTA+ TNRDLP +++  NG+ D+T+  + PV++V  +
Sbjct  419  SEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIP-RNGRDDLTVDAAIPVAGVGLI  477

Query  472  AGPSRPRASHAHDAKAWRLISQLSLNYLSLSEQGQ--GAAALRELLRLYGDSNDAALQLQ  529
              P  P+++ A+   AWRLI QLS+NYL+L++ ++  G+ ALR+LL L+  ++D++   Q
Sbjct  478  RPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQ  537

Query  530  IEGLREVSSKACTRRLPMPGPIVFGRGLEITLEFDENAFRGTGVFLLGAVFERFLARYVS  589
            + +L    + + TRRLP +G +V+GRG+   L  DE++F G + +L+G V+E+++AR VS
Sbjct  538  VRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVS  597

Query  590  INSFTETVIRTTERGEIMRWKAKPGRRPTL  619
            IN+F++  +++ +RG++M W  + G+R ++
Sbjct  598  INTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

161) XNC1_2530 in NC_014228


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  418 bits (1573),  Expect = 6e-118, Method: Compositional matrix adjust.
 Identities = 266/625 (43%), Positives = 427/625 (69%), Gaps = 5/625 (0%)

Query  1    MDSKLLEYYNRELVYLREMGKEFAERYPKVANRLGMHGIDVADPYVERLMEGFAFLTSRI  60
            MD++LLEYYNREL YLRE G EFA   PK+A RLGM+G D+ADPYVER++E+F+FL++R 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFSGHLLEMLYPNYLSPTPSMAIVELQPDTRKGDISHGFSVPRGTLMHCQT  120
            QLK+DAEFPRF+ +LLE++ PNY++PTPSMA+V L PDT+ GD++ G +VPR+T      
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  LKRDGITLQYATTQDVILQPLHLENVELGKIpanlplagl-nlnHYGAVSALRIRFSCKE  179
               +  + Q+ ++QDV L PL +E+V L   P+++P        +    +ALRI +    
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  180  KFFLNEL-DFNKLIFFLSGPDIQSQQLLELIMEHSVGIVCQILGD-DPQYQVLPDISPHH  237
             + ++EL +  +L F+L G +  + +L+EL+   +V+ +    G+ D + +V  + +  H
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  238  EGFDDNQSLFPDDPRNFSGYRQLQEYFAFPARFQFFSLSGMGSLLKQTTKKSEFELILLL  297
            EG++  Q+L+P     F G   L+E+FA P RF FF+ +G+++ L++   +   E+++LL
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVA-EIVILL  299

Query  298  NKVDTD-LESLVDTSYLTLNCTPVINLFPKVTERITVQESNNEYHLVVDNSRPLDYEIFS  356
            N++  D L    D++ ++L CTPVINLFP+ T RI V +S  E HLVVD +RPLDYE+FS
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  357  VQRLHGANIKRKETQIFRPFWSTFSDDKNNYGAYFSLRRDPRVLSEHARHYGTRSSYIGT  416
            VQ ++G +       IFRP+  T ++D  N G YFSLRR+PR  SE AR+YGTR++Y G+
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTGS  419

Query  417  EMFVSIVDEQHSPWPDQLKFLTADVMCTNRDLPTMLRQQDLDNFAMLDSIPIHQIAFLKR  476
            E+F+S+VD++++P P++L+ +T   M TNRDLP ++ +++ D++++  +IP+  +++++ 
Sbjct  420  EVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIRP  479

Query  477  PTIPHPALAQGSATWKLINQLQLNYLNFMDKGDEQGTQALRQLLSLYANLADPAITRQIN  536
            P  P+P+LA+   +W+LI QL +NYL + D ++  G QALR+LL+L+    D++ +RQ+ 
Sbjct  480  PRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQVR  539

Query  537  GIRHCSLKTVYRRVPEPGPIVFARGVSIRLEVNEQEFAGVSPWLLGSVLGKLFSHLVTMN  596
            ++  C    V RR+P +G +V++RGVS  L V+E+ F+G+SP L+G VL   +++ V++N
Sbjct  540  SLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSIN  599

Query  597  SFTEMTLYSQQRGDIGFWPASMGNK  621
            +F++MTL S QRG++  WP   G++
Sbjct  600  TFSQMTLHSMQRGHVMTWPVRTGQR  624

162) MDS_0026 in NC_015410


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  418 bits (1573),  Expect = 6e-118, Method: Compositional matrix adjust.
 Identities = 256/630 (41%), Positives = 432/630 (69%), Gaps = 14/630 (2%)

Query  1    MNPRLLELYNQELQHIRDGAAEFAREYPKIASRLSLSGLECTDPYVERLLEGFAWLTARV  60
            M+PRLLE YN+EL  +R+ +AEFA   PKIA+RL++ G + +DPYVER++E+F+ L+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKLDAEYPVFTHNLLEIAYPHYLAPTPSMTVVQLHTDANDGALNGSFNLPRDSVLRATL  120
            QLK+DAE+P FT+ LLE+  P+Y++PTPSM+VV+L  D+++G L  +  +PRD+ + + +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  GKDSQTPCEYRTAHPVTLWPLQVAEAEYISNPS--AALGRLAASEPRAKAALRITLRSGA  178
              + +T+C++R+++ VTLWPL + E    + P+  +AL R  +++ +  +ALRITLR+ +
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  EIPFASL-DLDNLPLYLSGLDELPFRLYEQLLGNRVAVFARQPGRDWVERLPTDALRPC-  236
            E++F+ L +   LP+YL G + ++ +L+E L  + VA +A +PG+     L  +  +P  
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGH-FDGELNVNLQHPVA  239

Query  237  --GFDDAEAALPVVPQAFQGYRLLQEYFALPQRFLFVDFCNLRRAVRQCSGNELELIVLF  294
              G++ +++ LP+  + F+G  LL+E+FA P+RF F     L  ++++  GN  E+++L+
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  295  DRLDSN-LQNQVDASQFLPFCTPAINLFPRRLDRIHLSDKVHEHHAIADRTRPMDFEIHS  353
            +RL ++ L +Q DA+QF  FCTP INLFPR   RI++++ V E+H + DRTRP+D+E+ S
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  354  LRGVTGHGSGPEQT--FLPFYAVRDPARYGRDQAYYIVRREPRVLSAGQRRNGTRSSYVG  411
            ++ V G  +   +   F P+Y  R+    G +  Y+ +RREPR  S + RR GTR++Y G
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDE-GNHGRYFSLRREPRRSSESARRYGTRTPYTG  418

Query  412  SETFISLVDSHQAPYRHDLRQLGLSALCTNRDLPLFMTVGSGKSDFTLADSAPVQSVRCV  471
            SE F+SLVD H+APY ++LR++ ++A+ TNRDLP  +   +G+ D+T+  + PV +V  +
Sbjct  419  SEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLP-CLIPRNGRDDLTVDAAIPVAGVGLI  477

Query  472  AGPSRPRASPAHDNQAWRLISQLSLNYLSLAEQGQ--GAAALREMLRLYGDIQNPALQLQ  529
              P  P+++ A+ + AWRLI QLS+NYL+LA+ ++  G+ ALR++L L+   ++++   Q
Sbjct  478  RPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQ  537

Query  530  IEGLRDVSAKPCTRRLPMPGPIVFGRGLEITLEFDENAFRGTGVFLLGAVFERFLARYVS  589
            + +L +  + P TRRLP +G +V+GRG+   L  DE++F G + +L+G V+E+++AR VS
Sbjct  538  VRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVS  597

Query  590  LNSFTETVLRSTERGEIMRWKARPGRRPNL  619
            +N+F++  L+S +RG++M W  R G+R ++
Sbjct  598  INTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

163) G655_00450 in NC_020912


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  418 bits (1573),  Expect = 7e-118, Method: Compositional matrix adjust.
 Identities = 259/630 (42%), Positives = 429/630 (69%), Gaps = 14/630 (2%)

Query  1    MNPRLLEYYNQELQHIRESAAEFAEEFPKIAGRLSLSGFECADPYVERLLEGFAYLTARV  60
            M+PRLLEYYN+EL  +RE++AEFA   PKIA+RL++ G + ADPYVER++E+F++L+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKLDAEYPTFTHNLLEIAYPHYLAPTPSMTVVQLRPDPNEGALSSGFSVERGASLRGQL  120
            QLK+DAE+P FT+ LLE+  P+Y++PTPSM+VV+L PD +EG L+ G +V R++++ + +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  GPDDQTACEYRTAHPVTLWPLEVAQADYFGNPAAV--LGRLAASEPRAKAGLRIRLRSGA  178
              +++TAC++R+++ VTLWPL + +    + P+ +  L R  +++ +  ++LRI LR+ +
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  GIPFDSLSLDA-LPLYLHGADEQPYRLYEQLLGNACAVFVRAPDNAWVERLPTS---SLR  234
             ++F  L+  A LP+YL G +  + +L+E L  +A A +   P++     L  +   ++ 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGH-FDGELNVNLQHPVA  239

Query  235  ARGFDDEDALLPVVPRAFQGYRLLQEYFALPARFLFVEFSGLNRALRRCHGEELELVVLF  294
              G++  ++LLP+    F+G  LL+E+FA P RF F   +GL+ +L++ +G+  E+V+L+
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  295  GK-HDQRLEGTVDAEQLVPFCTPAINLFPRRCDRIHLSDRVNEHHVIVDRTRPLDFEVHS  353
             +   ++L    DA Q+  FCTP INLFPR   RI++++ V E+H++VDRTRPLD+EV S
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  354  LQQVSGHGSGPEQP--FQPFYAVRDPARYGREQAYFSVRREPRVLSSKQRRKGPRSTYVG  411
            +Q+V G  +   +   F+P+Y  R+    G +  YFS+RREPR  S   RR G R+ Y G
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDE-GNHGRYFSLRREPRRSSESARRYGTRTPYTG  418

Query  412  SETFVALVDANQAPYRHDLRQLGIAALCTNRDLPLFMPIGAHKSDFTLEDSAPVMQVRCL  471
            SE F++LVD ++APY ++LR++ ++A+ TNRDLP ++P  + + D+T++ + PV  V  +
Sbjct  419  SEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNG-RDDLTVDAAIPVAGVGLI  477

Query  472  AGPSRPRASRAHDASAWRLISQLSLNYLSLAERGQ--GAAALRELLRLYGDSGDPALQLQ  529
              P  P+++ A+   AWRLI QLS+NYL+LA+ ++  G+ ALR+LL L+  + D++   Q
Sbjct  478  RPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQ  537

Query  530  IEGLREVSSKPCTRRLPMPGPIVFGRGLEITLDFDENAFRGTGVFLLGAVFERFLARYVS  589
            + +L    + P TRRLP +G +V+GRG+   L  DE++F G + +L+G V+E+++AR VS
Sbjct  538  VRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVS  597

Query  590  INSFTETVLRTGERGEVMRWQAKPGSRPNL  619
            IN+F++  L++ +RG+VM W  + G R ++
Sbjct  598  INTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

164) PADK2_00460 in NC_018080


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  418 bits (1573),  Expect = 7e-118, Method: Compositional matrix adjust.
 Identities = 259/630 (42%), Positives = 429/630 (69%), Gaps = 14/630 (2%)

Query  1    MNPRLLEYYNQELQHIRESAAEFAEEFPKIAGRLSLSGFECADPYVERLLEGFAYLTARV  60
            M+PRLLEYYN+EL  +RE++AEFA   PKIA+RL++ G + ADPYVER++E+F++L+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKLDAEYPTFTHNLLEIAYPHYLAPTPSMTVVQLRPDPNEGALSSGFSVERGASLRGQL  120
            QLK+DAE+P FT+ LLE+  P+Y++PTPSM+VV+L PD +EG L+ G +V R++++ + +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  GPDDQTACEYRTAHPVTLWPLEVAQADYFGNPAAV--LGRLAASEPRAKAGLRIRLRSGA  178
              +++TAC++R+++ VTLWPL + +    + P+ +  L R  +++ +  ++LRI LR+ +
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  GIPFDSLSLDA-LPLYLHGADEQPYRLYEQLLGNACAVFVRAPDNAWVERLPTS---SLR  234
             ++F  L+  A LP+YL G +  + +L+E L  +A A +   P++     L  +   ++ 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGH-FDGELNVNLQHPVA  239

Query  235  ARGFDDEDALLPVVPRAFQGYRLLQEYFALPARFLFVEFSGLNRALRRCHGEELELVVLF  294
              G++  ++LLP+    F+G  LL+E+FA P RF F   +GL+ +L++ +G+  E+V+L+
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  295  GK-HDQRLEGTVDAEQLVPFCTPAINLFPRRCDRIHLSDRVNEHHVIVDRTRPLDFEVHS  353
             +   ++L    DA Q+  FCTP INLFPR   RI++++ V E+H++VDRTRPLD+EV S
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  354  LQQVSGHGSGPEQP--FQPFYAVRDPARYGREQAYFSVRREPRVLSSKQRRKGPRSTYVG  411
            +Q+V G  +   +   F+P+Y  R+    G +  YFS+RREPR  S   RR G R+ Y G
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDE-GNHGRYFSLRREPRRSSESARRYGTRTPYTG  418

Query  412  SETFVALVDANQAPYRHDLRQLGIAALCTNRDLPLFMPIGAHKSDFTLEDSAPVMQVRCL  471
            SE F++LVD ++APY ++LR++ ++A+ TNRDLP ++P  + + D+T++ + PV  V  +
Sbjct  419  SEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNG-RDDLTVDAAIPVAGVGLI  477

Query  472  AGPSRPRASRAHDASAWRLISQLSLNYLSLAERGQ--GAAALRELLRLYGDSGDPALQLQ  529
              P  P+++ A+   AWRLI QLS+NYL+LA+ ++  G+ ALR+LL L+  + D++   Q
Sbjct  478  RPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQ  537

Query  530  IEGLREVSSKPCTRRLPMPGPIVFGRGLEITLDFDENAFRGTGVFLLGAVFERFLARYVS  589
            + +L    + P TRRLP +G +V+GRG+   L  DE++F G + +L+G V+E+++AR VS
Sbjct  538  VRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVS  597

Query  590  INSFTETVLRTGERGEVMRWQAKPGSRPNL  619
            IN+F++  L++ +RG+VM W  + G R ++
Sbjct  598  INTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

165) PLES_00891 in NC_011770


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  418 bits (1573),  Expect = 7e-118, Method: Compositional matrix adjust.
 Identities = 259/630 (42%), Positives = 429/630 (69%), Gaps = 14/630 (2%)

Query  1    MNPRLLEYYNQELQHIRESAAEFAEEFPKIAGRLSLSGFECADPYVERLLEGFAYLTARV  60
            M+PRLLEYYN+EL  +RE++AEFA   PKIA+RL++ G + ADPYVER++E+F++L+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKLDAEYPTFTHNLLEIAYPHYLAPTPSMTVVQLRPDPNEGALSSGFSVERGASLRGQL  120
            QLK+DAE+P FT+ LLE+  P+Y++PTPSM+VV+L PD +EG L+ G +V R++++ + +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  GPDDQTACEYRTAHPVTLWPLEVAQADYFGNPAAV--LGRLAASEPRAKAGLRIRLRSGA  178
              +++TAC++R+++ VTLWPL + +    + P+ +  L R  +++ +  ++LRI LR+ +
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  GIPFDSLSLDA-LPLYLHGADEQPYRLYEQLLGNACAVFVRAPDNAWVERLPTS---SLR  234
             ++F  L+  A LP+YL G +  + +L+E L  +A A +   P++     L  +   ++ 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGH-FDGELNVNLQHPVA  239

Query  235  ARGFDDEDALLPVVPRAFQGYRLLQEYFALPARFLFVEFSGLNRALRRCHGEELELVVLF  294
              G++  ++LLP+    F+G  LL+E+FA P RF F   +GL+ +L++ +G+  E+V+L+
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  295  GK-HDQRLEGTVDAEQLVPFCTPAINLFPRRCDRIHLSDRVNEHHVIVDRTRPLDFEVHS  353
             +   ++L    DA Q+  FCTP INLFPR   RI++++ V E+H++VDRTRPLD+EV S
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  354  LQQVSGHGSGPEQP--FQPFYAVRDPARYGREQAYFSVRREPRVLSSKQRRKGPRSTYVG  411
            +Q+V G  +   +   F+P+Y  R+    G +  YFS+RREPR  S   RR G R+ Y G
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDE-GNHGRYFSLRREPRRSSESARRYGTRTPYTG  418

Query  412  SETFVALVDANQAPYRHDLRQLGIAALCTNRDLPLFMPIGAHKSDFTLEDSAPVMQVRCL  471
            SE F++LVD ++APY ++LR++ ++A+ TNRDLP ++P  + + D+T++ + PV  V  +
Sbjct  419  SEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNG-RDDLTVDAAIPVAGVGLI  477

Query  472  AGPSRPRASRAHDASAWRLISQLSLNYLSLAERGQ--GAAALRELLRLYGDSGDPALQLQ  529
              P  P+++ A+   AWRLI QLS+NYL+LA+ ++  G+ ALR+LL L+  + D++   Q
Sbjct  478  RPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQ  537

Query  530  IEGLREVSSKPCTRRLPMPGPIVFGRGLEITLDFDENAFRGTGVFLLGAVFERFLARYVS  589
            + +L    + P TRRLP +G +V+GRG+   L  DE++F G + +L+G V+E+++AR VS
Sbjct  538  VRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVS  597

Query  590  INSFTETVLRTGERGEVMRWQAKPGSRPNL  619
            IN+F++  L++ +RG+VM W  + G R ++
Sbjct  598  INTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

166) PAM18_0090 in NC_017548


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  418 bits (1573),  Expect = 7e-118, Method: Compositional matrix adjust.
 Identities = 259/630 (42%), Positives = 429/630 (69%), Gaps = 14/630 (2%)

Query  1    MNPRLLEYYNQELQHIRESAAEFAEEFPKIAGRLSLSGFECADPYVERLLEGFAYLTARV  60
            M+PRLLEYYN+EL  +RE++AEFA   PKIA+RL++ G + ADPYVER++E+F++L+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKLDAEYPTFTHNLLEIAYPHYLAPTPSMTVVQLRPDPNEGALSSGFSVERGASLRGQL  120
            QLK+DAE+P FT+ LLE+  P+Y++PTPSM+VV+L PD +EG L+ G +V R++++ + +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  GPDDQTACEYRTAHPVTLWPLEVAQADYFGNPAAV--LGRLAASEPRAKAGLRIRLRSGA  178
              +++TAC++R+++ VTLWPL + +    + P+ +  L R  +++ +  ++LRI LR+ +
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  GIPFDSLSLDA-LPLYLHGADEQPYRLYEQLLGNACAVFVRAPDNAWVERLPTS---SLR  234
             ++F  L+  A LP+YL G +  + +L+E L  +A A +   P++     L  +   ++ 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGH-FDGELNVNLQHPVA  239

Query  235  ARGFDDEDALLPVVPRAFQGYRLLQEYFALPARFLFVEFSGLNRALRRCHGEELELVVLF  294
              G++  ++LLP+    F+G  LL+E+FA P RF F   +GL+ +L++ +G+  E+V+L+
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  295  GK-HDQRLEGTVDAEQLVPFCTPAINLFPRRCDRIHLSDRVNEHHVIVDRTRPLDFEVHS  353
             +   ++L    DA Q+  FCTP INLFPR   RI++++ V E+H++VDRTRPLD+EV S
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  354  LQQVSGHGSGPEQP--FQPFYAVRDPARYGREQAYFSVRREPRVLSSKQRRKGPRSTYVG  411
            +Q+V G  +   +   F+P+Y  R+    G +  YFS+RREPR  S   RR G R+ Y G
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDE-GNHGRYFSLRREPRRSSESARRYGTRTPYTG  418

Query  412  SETFVALVDANQAPYRHDLRQLGIAALCTNRDLPLFMPIGAHKSDFTLEDSAPVMQVRCL  471
            SE F++LVD ++APY ++LR++ ++A+ TNRDLP ++P  + + D+T++ + PV  V  +
Sbjct  419  SEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNG-RDDLTVDAAIPVAGVGLI  477

Query  472  AGPSRPRASRAHDASAWRLISQLSLNYLSLAERGQ--GAAALRELLRLYGDSGDPALQLQ  529
              P  P+++ A+   AWRLI QLS+NYL+LA+ ++  G+ ALR+LL L+  + D++   Q
Sbjct  478  RPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQ  537

Query  530  IEGLREVSSKPCTRRLPMPGPIVFGRGLEITLDFDENAFRGTGVFLLGAVFERFLARYVS  589
            + +L    + P TRRLP +G +V+GRG+   L  DE++F G + +L+G V+E+++AR VS
Sbjct  538  VRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVS  597

Query  590  INSFTETVLRTGERGEVMRWQAKPGSRPNL  619
            IN+F++  L++ +RG+VM W  + G R ++
Sbjct  598  INTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

167) NCGM2_0092 in NC_017549


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  418 bits (1573),  Expect = 7e-118, Method: Compositional matrix adjust.
 Identities = 259/630 (42%), Positives = 429/630 (69%), Gaps = 14/630 (2%)

Query  1    MNPRLLEYYNQELQHIRESAAEFAEEFPKIAGRLSLSGFECADPYVERLLEGFAYLTARV  60
            M+PRLLEYYN+EL  +RE++AEFA   PKIA+RL++ G + ADPYVER++E+F++L+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKLDAEYPTFTHNLLEIAYPHYLAPTPSMTVVQLRPDPNEGALSSGFSVERGASLRGQL  120
            QLK+DAE+P FT+ LLE+  P+Y++PTPSM+VV+L PD +EG L+ G +V R++++ + +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  GPDDQTACEYRTAHPVTLWPLEVAQADYFGNPAAV--LGRLAASEPRAKAGLRIRLRSGA  178
              +++TAC++R+++ VTLWPL + +    + P+ +  L R  +++ +  ++LRI LR+ +
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  GIPFDSLSLDA-LPLYLHGADEQPYRLYEQLLGNACAVFVRAPDNAWVERLPTS---SLR  234
             ++F  L+  A LP+YL G +  + +L+E L  +A A +   P++     L  +   ++ 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGH-FDGELNVNLQHPVA  239

Query  235  ARGFDDEDALLPVVPRAFQGYRLLQEYFALPARFLFVEFSGLNRALRRCHGEELELVVLF  294
              G++  ++LLP+    F+G  LL+E+FA P RF F   +GL+ +L++ +G+  E+V+L+
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  295  GK-HDQRLEGTVDAEQLVPFCTPAINLFPRRCDRIHLSDRVNEHHVIVDRTRPLDFEVHS  353
             +   ++L    DA Q+  FCTP INLFPR   RI++++ V E+H++VDRTRPLD+EV S
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  354  LQQVSGHGSGPEQP--FQPFYAVRDPARYGREQAYFSVRREPRVLSSKQRRKGPRSTYVG  411
            +Q+V G  +   +   F+P+Y  R+    G +  YFS+RREPR  S   RR G R+ Y G
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDE-GNHGRYFSLRREPRRSSESARRYGTRTPYTG  418

Query  412  SETFVALVDANQAPYRHDLRQLGIAALCTNRDLPLFMPIGAHKSDFTLEDSAPVMQVRCL  471
            SE F++LVD ++APY ++LR++ ++A+ TNRDLP ++P  + + D+T++ + PV  V  +
Sbjct  419  SEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNG-RDDLTVDAAIPVAGVGLI  477

Query  472  AGPSRPRASRAHDASAWRLISQLSLNYLSLAERGQ--GAAALRELLRLYGDSGDPALQLQ  529
              P  P+++ A+   AWRLI QLS+NYL+LA+ ++  G+ ALR+LL L+  + D++   Q
Sbjct  478  RPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQ  537

Query  530  IEGLREVSSKPCTRRLPMPGPIVFGRGLEITLDFDENAFRGTGVFLLGAVFERFLARYVS  589
            + +L    + P TRRLP +G +V+GRG+   L  DE++F G + +L+G V+E+++AR VS
Sbjct  538  VRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVS  597

Query  590  INSFTETVLRTGERGEVMRWQAKPGSRPNL  619
            IN+F++  L++ +RG+VM W  + G R ++
Sbjct  598  INTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

168) PA14_01070 in NC_008463


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  418 bits (1573),  Expect = 7e-118, Method: Compositional matrix adjust.
 Identities = 259/630 (42%), Positives = 429/630 (69%), Gaps = 14/630 (2%)

Query  1    MNPRLLEYYNQELQHIRESAAEFAEEFPKIAGRLSLSGFECADPYVERLLEGFAYLTARV  60
            M+PRLLEYYN+EL  +RE++AEFA   PKIA+RL++ G + ADPYVER++E+F++L+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKLDAEYPTFTHNLLEIAYPHYLAPTPSMTVVQLRPDPNEGALSSGFSVERGASLRGQL  120
            QLK+DAE+P FT+ LLE+  P+Y++PTPSM+VV+L PD +EG L+ G +V R++++ + +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  GPDDQTACEYRTAHPVTLWPLEVAQADYFGNPAAV--LGRLAASEPRAKAGLRIRLRSGA  178
              +++TAC++R+++ VTLWPL + +    + P+ +  L R  +++ +  ++LRI LR+ +
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  GIPFDSLSLDA-LPLYLHGADEQPYRLYEQLLGNACAVFVRAPDNAWVERLPTS---SLR  234
             ++F  L+  A LP+YL G +  + +L+E L  +A A +   P++     L  +   ++ 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGH-FDGELNVNLQHPVA  239

Query  235  ARGFDDEDALLPVVPRAFQGYRLLQEYFALPARFLFVEFSGLNRALRRCHGEELELVVLF  294
              G++  ++LLP+    F+G  LL+E+FA P RF F   +GL+ +L++ +G+  E+V+L+
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  295  GK-HDQRLEGTVDAEQLVPFCTPAINLFPRRCDRIHLSDRVNEHHVIVDRTRPLDFEVHS  353
             +   ++L    DA Q+  FCTP INLFPR   RI++++ V E+H++VDRTRPLD+EV S
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  354  LQQVSGHGSGPEQP--FQPFYAVRDPARYGREQAYFSVRREPRVLSSKQRRKGPRSTYVG  411
            +Q+V G  +   +   F+P+Y  R+    G +  YFS+RREPR  S   RR G R+ Y G
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDE-GNHGRYFSLRREPRRSSESARRYGTRTPYTG  418

Query  412  SETFVALVDANQAPYRHDLRQLGIAALCTNRDLPLFMPIGAHKSDFTLEDSAPVMQVRCL  471
            SE F++LVD ++APY ++LR++ ++A+ TNRDLP ++P  + + D+T++ + PV  V  +
Sbjct  419  SEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNG-RDDLTVDAAIPVAGVGLI  477

Query  472  AGPSRPRASRAHDASAWRLISQLSLNYLSLAERGQ--GAAALRELLRLYGDSGDPALQLQ  529
              P  P+++ A+   AWRLI QLS+NYL+LA+ ++  G+ ALR+LL L+  + D++   Q
Sbjct  478  RPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQ  537

Query  530  IEGLREVSSKPCTRRLPMPGPIVFGRGLEITLDFDENAFRGTGVFLLGAVFERFLARYVS  589
            + +L    + P TRRLP +G +V+GRG+   L  DE++F G + +L+G V+E+++AR VS
Sbjct  538  VRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVS  597

Query  590  INSFTETVLRTGERGEVMRWQAKPGSRPNL  619
            IN+F++  L++ +RG+VM W  + G R ++
Sbjct  598  INTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

169) PA0088 in NC_002516


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  417 bits (1568),  Expect = 2e-117, Method: Compositional matrix adjust.
 Identities = 257/630 (41%), Positives = 428/630 (68%), Gaps = 14/630 (2%)

Query  1    MNPRLLEYYNQELQHIRESAAEFAEEFPKIAGRLSLSGFECADPYVERLLEGFAYLTARV  60
            M+PRLLEYYN+EL  +RE++AEFA   PKIA+RL++ G + ADPYVER++E+F++L+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKLDAEYPTFTHNLLEIAYPHYLAPTPSMTVVQLRPDPNEGALSSGFSIERGASLRGQL  120
            QLK+DAE+P FT+ LLE+  P+Y++PTPSM+VV+L PD +EG L+ G ++ R++++ + +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  GPDDQTACEYRTAHPVTLWPLEVAQADYFGNPAAV--LGRLAASEPRAKAGLRIRLRSGA  178
              +++TAC++R+++ VTLWPL + +    + P+ +  L R  +++ +  ++LRI LR+ +
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  GIPFDSLSLDA-LPLYLHGADEQPYRLYEQLLGNACAVFVRAPDNAWVERLPTS---SLR  234
             ++F  L+  A LP+YL G +  + +L+E L  +A A +   P++     L  +   ++ 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGH-FDGELNVNLQHPVA  239

Query  235  ARGFDDEDALLPVVPRAFQGYRLLQEYFALPARFLFVEFSGLNRALRRCHGEELELVVLF  294
              G++  ++LLP+    F+G  LL+E+FA P RF F   +GL+ +L++ +G+  E+V+L+
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  295  GK-HDQRLEGTVDAEQLVPFCTPAINLFPRRCDRIHLSDRVNEHHVIVDRTRPLDFEVHS  353
             +   ++L    DA Q+  FCTP INLFPR   RI++++ V E+H++VDRTRPLD+EV S
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  354  LQQVSGHGSGPEQP--FQPFYAVRDPARYGREQAYFRVRREPRVLSSKQRRKGPRSTYVG  411
            +Q+V G  +   +   F+P+Y  R+    G +  YF +RREPR  S   RR G R+ Y G
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDE-GNHGRYFSLRREPRRSSESARRYGTRTPYTG  418

Query  412  SETFVALVDANQAPYRHDLRQLGIAALCTNRDLPLFMPIGAHKSDFTLEDSAPVMQVRCL  471
            SE F++LVD ++APY ++LR++ ++A+ TNRDLP ++P  + + D+T++ + PV  V  +
Sbjct  419  SEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNG-RDDLTVDAAIPVAGVGLI  477

Query  472  AGPSRPRASRAHDASAWRLISQLSLNYLSLAERGQ--GAAALRELLRLYGDSGDPALQLQ  529
              P  P+++ A+   AWRLI QLS+NYL+LA+ ++  G+ ALR+LL L+  + D++   Q
Sbjct  478  RPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQ  537

Query  530  IEGLREVSSKPCTRRLPMPGPIVFGRGLEITLDFDENAFRGTGVFLLGAVFERFLARYVS  589
            + +L    + P TRRLP +G +V+GRG+   L  DE++F G + +L+G V+E+++AR VS
Sbjct  538  VRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVS  597

Query  590  INSFTETVLRTGERGEVMRWQAKPGSRPNL  619
            IN+F++  L++ +RG+VM W  + G R ++
Sbjct  598  INTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

170) M062_00455 in NC_021577


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  417 bits (1568),  Expect = 2e-117, Method: Compositional matrix adjust.
 Identities = 258/630 (41%), Positives = 429/630 (69%), Gaps = 14/630 (2%)

Query  1    MNPRLLEYYNQELQHIRESAAEFAEEFPKIAGRLSLSGFECADPYVERLLEGFAYLTARV  60
            M+PRLLEYYN+EL  +RE++AEFA   PKIA+RL++ G + ADPYVER++E+F++L+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKLDAEYPTFTHNLLEIAYPHYLAPTPSMTVVQLRPDPNEGALSSGFSVERGASLRGQL  120
            QLK+DAE+P FT+ LLE+  P+Y++PTPSM+VV+L PD +EG L+ G +V R++++ + +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  GPDDQTACEYRTAHPVTLWPLEVAQADYFGNPAAV--LGRLAASEPRAKAGLRIRLRSGA  178
              +++TAC++R+++ VTLWPL + +    + P+ +  L R  +++ +  ++LRI LR+ +
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  GIPFDSLSLDA-LPLYLHGADEQPYRLYEQLLGNACAVFVRAPDNAWVERLPTS---SLR  234
             ++F  L+  A LP+YL G +  + +L+E L  +A A +   P++     L  +   ++ 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGH-FDGELNVNLQHPVA  239

Query  235  ARGFDDEDALLPVVPRAFQGYRLLQEYFALPARFLFVEFSGLNRALRRCHGEELELVVLF  294
              G++  ++LLP+    F+G  LL+E+FA P RF F   +GL+ +L++ +G+  E+V+L+
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  295  GK-HDQRLEGTVGAEQLVPFCTPAINLFPRRCDRIHLSDRVNEHHVIVDRTRPLDFEVHS  353
             +   ++L    +A Q+  FCTP INLFPR   RI++++ V E+H++VDRTRPLD+EV S
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  354  LQQVSGHGSGPEQP--FQPFYAVRDPARYGREQAYFSVRREPRVLSSKQRRKGPRSTYVG  411
            +Q+V G  +   +   F+P+Y  R+    G +  YFS+RREPR  S   RR G R+ Y G
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDE-GNHGRYFSLRREPRRSSESARRYGTRTPYTG  418

Query  412  SETFVALVDANQAPYRHDLRQLGIAALCTNRDLPLFMPIGAHKSDFTLEDSAPVMQVRCL  471
            SE F++LVD ++APY ++LR++ ++A+ TNRDLP ++P  + + D+T++ + PV  V  +
Sbjct  419  SEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNG-RDDLTVDAAIPVAGVGLI  477

Query  472  AGPSRPRASRAHDASAWRLISQLSLNYLSLAERGQ--GAAALRELLRLYGDSGDPALQLQ  529
              P  P+++ A+   AWRLI QLS+NYL+LA+ ++  G+ ALR+LL L+  + D++   Q
Sbjct  478  RPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQ  537

Query  530  IEGLREVSSKPCTRRLPMPGPIVFGRGLEITLDFDENAFRGTGVFLLGAVFERFLARYVS  589
            + +L    + P TRRLP +G +V+GRG+   L  DE++F G + +L+G V+E+++AR VS
Sbjct  538  VRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVS  597

Query  590  INSFTETVLRTGERGEVMRWQAKPGSRPNL  619
            IN+F++  L++ +RG+VM W  + G R ++
Sbjct  598  INTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

171) Pmen_2329 in NC_009439


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  416 bits (1565),  Expect = 2e-117, Method: Compositional matrix adjust.
 Identities = 262/630 (42%), Positives = 425/630 (68%), Gaps = 14/630 (2%)

Query  1    MNPRLLDYYNQELQHIRESAAEFAAEFPKIASRLTLSGIDCADPYVERLLEGFAYLTARV  60
            M+PRLL+YYN+EL  +RE++AEFA+  PKIA+RL + G D ADPYVER++E+F++L+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   HLKLDAEYPTFTHNLLEIAYPHYLAPTPSVTVVQLCADPDEGSLASGFRIERGAALRGQL  120
            +LK+DAE+P FT+ LLE+  P+Y++PTPS++VV+L +D +EG LA G  + R++A+ + +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  GHEEQTACEYRTSHDVTLWPLEVSRAEYFGNPA--TALGRLAAAEPRAKAGLRIRLKCGA  178
             + E+TAC++R+S+DVTLWPL +      + P+   AL R  +++ +  ++LRI L+  +
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  GMPFKALA-LDSLPLFLAGADEQPFRLYEQLLGNACALFIKSV---DGEWAERLPLSCIQ  234
             ++F  LA    LP++L G +  + +L+E L  +A A +       DGE    L  +  +
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  235  ARGFDDKDAVLPVVPRAFQGYRLLQEYFALPNRFLFVEFSGLLRGVARCAAQELELVVLF  294
              G++  +++LP+    F+G  LL+E+FA P+RF F   +GL  G+ +  ++  E+V+L+
Sbjct  241  E-GLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  295  NRLDTS-LEGSVSAAQFVPFCTPAINLFPRRADRIHLSDHVHEYQVIADRTRPLDFEVHS  353
            NRL    L     AAQF  FCTP INLFPR + RI++++ V E +++ DRTRPLD+EV S
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  354  LTQVSGHGSGPEQP--FQPFYAIRDPARYGREQAYYVVRREARRLSSQARRRGPRSTYVG  411
            + +V G  +   +   F+P+Y  R+    G +  Y+ +RRE+RR S  ARR G R+ Y G
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDE-GNHGRYFSLRREPRRSSESARRYGTRTPYTG  418

Query  412  SETFVSLVDVNQAPYRHDLRQLGIGALCTNRDLPLLMPVGTGKSDFTLEDSAPVQAVRCL  471
            SE F+SLVD ++APY ++LR++ + A+ TNRDLP L+P   G+ D+T++ + PV +V  +
Sbjct  419  SEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIP-RNGRDDLTVDAAIPVAGVGLI  477

Query  472  AGPSRPRASRAHDASAWRLISQLSLNYLSLSERGQ--GAAALRELLRLYGDPSDSALQLQ  529
              P  P+++ A+   AWRLI QLS+NYL+L++ ++  G+ ALR+LL L+  + DS+   Q
Sbjct  478  RPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQ  537

Query  530  IEGLREVRSAPCTRRLPMPGPIVFGRGLEISLEFDENAFRGTGVYLLGAVFERFLARYVS  589
            + +L   +++P TRRLP +G +V+GRG+   L  DE++F G + YL+G V+E+++AR VS
Sbjct  538  VRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVS  597

Query  590  INSFTETVLRTTERGEIMRWQAQPGRRPNL  619
            IN+F++  L++ +RG++M W  + G+R ++
Sbjct  598  INTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

172) PFLU6023 in NC_012660


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  416 bits (1564),  Expect = 3e-117, Method: Compositional matrix adjust.
 Identities = 258/630 (41%), Positives = 427/630 (68%), Gaps = 14/630 (2%)

Query  1    MNPRLLELYNQELHHVRESAAEFAKEYPKIASRLTLSGMDCADPYVERLLEGFAYLTARV  60
            M+PRLLE YN+EL  +RE++AEFA   PKIA+RL + G D ADPYVER++E+F++L+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKLDAEYPTFTHNLLEIAYPHYLAPTPSMTVVQLQTDPDEGSLASGFPLPRDTVLRAAL  120
            QLK+DAE+P FT+ LLE+  P+Y++PTPSM+VV+L  D +EG LA G  +PRDT + +++
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  GRETQTCCEYRTAHPVTLWPLQVSSAEYFGNPAAV--LGRLAASEPKAKAGLRLTLRTGA  178
                +T C++R+++ VTLWPL +      + P+ +  L R  +++    ++LR+TLRT +
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  ELPFNSL-DLDNLPLYLSGADEQPFRLYEQLLGNACAVFARKPG---GDWVERLPQDALR  234
            EL+F+ L +   LP+YL G +  + +L+E L  +A A +A  PG   G+    L Q+++ 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNL-QHPVA  239

Query  235  SRGFDDADAAMPVVARAFQGYRLLQEYFALPHRYLFVEFAELSRAVKRCDGQELELIVLF  294
              G++ +++ +P+    F+G  LL+E+FA P+R+ F   + LS ++++ +G+  E+++L+
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  295  DRHEPS-LEGSVGAAQFLPFCTPAINLFPKRVDRIHLSDRVSEHHVIADRTRPMDFEIHS  353
            +R  P  L    +AAQF  FCTP INLFP+   RI++++ V+E+H++ DRTRP+D+E+ S
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  354  LSGITGHGTGPEQP--FLPFYAVRDPSRYGRDQAYYTVRREPRVLSSDQRRNGPRSTYVG  411
            +  + G  +   +   F P+Y  R+    G +  Y+++RREPR  S   RR G R+ Y G
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDE-GNHGRYFSLRREPRRSSESARRYGTRTPYTG  418

Query  412  SETFVNLVDSGQAPYRHDLRQLGVTALCTNRDLPLFMSVGNGKTDFTLADSAPVLAVRCV  471
            SE F++LVD  +APY ++LR++ VTA+ TNRDLP +++  NG+ D+T+  + PV +V  +
Sbjct  419  SEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIP-RNGRDDLTVDAAIPVAGVGLI  477

Query  472  AGPSRPRPSHAHDAKAWRLISQLSLNYLSLSEQGQ--GAGALRELLRLYGDSNDAALQLQ  529
              P  P+P+ A+   AWRLI QLS+NYL+L++ ++  G+ ALR+LL L+  ++D++   Q
Sbjct  478  RPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQ  537

Query  530  IEGLREVSSKAVTRRLPMPGPIVFGRGLEITLEFDENAFRGTGVFLLGAVLERFLARYVS  589
            + +L    + +VTRRLP +G +V+GRG+   L  DE++F G + +L+G VLE+++AR VS
Sbjct  538  VRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVS  597

Query  590  INSFTETVIRTTERGEIMRWKAKPGRRPTL  619
            IN+F++  +++ +RG++M W  + G+R ++
Sbjct  598  INTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

173) PSPA7_0160 in NC_009656


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  415 bits (1562),  Expect = 5e-117, Method: Compositional matrix adjust.
 Identities = 260/630 (42%), Positives = 425/630 (68%), Gaps = 14/630 (2%)

Query  1    MNPRLLEYYNQELQHIRESAAEFAEEFPKIAGRLSLSGFECADPYVERLLEGFAYLTARV  60
            M+PRLLEYYN+EL  +RE++AEFA   PKIA+RL++ G + ADPYVER++E+F++L+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKLDAEYPTFTHNLLEIAYPHYLAPTPSMTVVQLRPDPNEGALSSGFSVERGASLRGQL  120
            QLK+DAE+P FT+ LLE+  P+Y++PTPSM+VV+L PD +EG L+ G +V R++++ + +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  GPEDQTACEYRTAHPVTLWPLEVVQADYFGNPAAV--LGRLAASEPRAKAGLRIRLRSGA  178
               ++TAC++R+++ VTLWPL + +    + P+ +  L R  +++ +  ++LRI LR+ +
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  GIPFHSLSLDA-LPLYLHGADEQPYRLYEQLLGNACAVFVRAPDNAWVERLPASSLRP--  235
             ++F  L+  A LP+YL G +  + +L+E L  +A A +   P++     L  +  +P  
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGH-FDGELNVNLQHPVA  239

Query  236  -RGFDDEDALLPVVPRAFQGYRLLQEYFALPARFLFVEFSGLNRALRRCAGEELELIVLF  294
              G++  ++LLP+    F+G  LL+E+FA P RF F   +GL+ +L++  G+  E+++L+
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  295  GK-HDARLEGTVDAEQLVPFCTPAINLFPRRCDRIHLSDRVNEHHVIVDRTRPLDFEVHS  353
             +    +L    DA Q+  FCTP INLFPR   RI++++ V E+H++VDRTRPLD+EV S
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  354  LQQVSGHGSGPEQP--FQPFYAVRDPARYGREQAYFSVRREPRVLSSKQRRKGPRSTYVG  411
            +Q+V G  +   +   F+P+Y  R+    G +  YFS+RREPR  S   RR G R+ Y G
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDE-GNHGRYFSLRREPRRSSESARRYGTRTPYTG  418

Query  412  SETFVALVDASQAPYRHDLRQLGIAALCTNRDLPLFMPIGAHRSDFTLEDSAPVMQVRCL  471
            SE F++LVD  +APY ++LR++ ++A+ TNRDLP ++P  + R D+T++ + PV  V  +
Sbjct  419  SEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNG-RDDLTVDAAIPVAGVGLI  477

Query  472  AGPSRPRASRAHDASAWRLISQLSLNYLSLAERGQ--GAAALRELLRLYGDSGDPALQLQ  529
              P  P+++ A+   AWRLI QLS+NYL+LA+ ++  G+ ALR+LL L+  + D++   Q
Sbjct  478  RPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQ  537

Query  530  IEGLREVSSKPCTRRLPMPGPIVFGRGLEITLDFDENAFRGTGVFLLGAVFERFLARYVS  589
            + +L    + P TRRLP +G +V+GRG+   L  DE++F G + +L+G V+E+++AR VS
Sbjct  538  VRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVS  597

Query  590  INSFTETVLRTGERGEVMRWQAKPGSRPNL  619
            IN+F++  L++ +RG+VM W  + G R ++
Sbjct  598  INTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

174) EPYR_00665 in NC_017390


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  414 bits (1560),  Expect = 6e-117, Method: Compositional matrix adjust.
 Identities = 279/629 (45%), Positives = 430/629 (69%), Gaps = 7/629 (1%)

Query  1    MDSKQLDYYNRELAYLREMGAEFAGRYPKVAGRLGMRGDEVADPYVERLMEGFAFLTSRV  60
            MD++ L+YYNREL+YLRE GAEFA   PK+A+RLGM+G ++ADPYVER++E+F+FL++R 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFSQRLLEMIAPNYLSPTPSMAIAELQPDSRKGDISNGFLVPRGTMMDSQA  120
            QLK+DAEFPRF+QRLLE++ PNY++PTPSMA+  L PD++ GD+++G  VPR+T   S  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  LKQNGVTCSYTTAHDVMLQPVRIKSVELGGIPANVPLGELGLSQRGAVS-ALRIRIACDE  179
               +  +C + +++DV L P+ I  V L + P+++P  +  L+    V+ ALRI +    
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  180  SITLAHLSFDS-LMFFLSGPDMQALQLLELVMQHYVGGYCQSVGS-SPQRTLLGDDALQQ  237
             +++++L+  + L F+L G +  A +L+EL+    V+      G    +  +  ++++ +
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  238  EGFAADQALLPNDLRNFDGYRLLQEYFAFPARFQFISISQLRPLLQACDPQAREFDIVLL  297
            EG+ ++Q+LLP     F+G  LL+E+FA P RF F++ + L + LQ  + +  E  IV+L
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAE--IVIL  298

Query  298  LDSANPG-LERVIDHSHLALHCTPVINLFPKVAQRQKLSDSVHEYHLVVDNIRPLDYEIF  356
            L+   P+ L +  D ++++L CTPVINLFP+ + R  +++SV E HLVVD  RPLDYE+F
Sbjct  299  LNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVF  358

Query  357  SVQKLYASGERQREEQQFRPFWSTFSDDGGNYGAYFSLRREQRTLSEHAQRFGTRTGYVG  416
            SVQ + +          FRP+  T ++D GN G YFSLRRE R  SE A+R+GTRT Y G
Sbjct  359  SVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTG  418

Query  417  SEVFLSLVDEHNSPWHEDLRYLTAEVMCTSRDlp-llllqqqgqFVMPDSIPVRQLTLRK  475
            SEVFLSLVD+H++P  E+LR +T   M T+RDLP L+  + ++++ +  +IPV  + L +
Sbjct  419  SEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIR  478

Query  476  GPTPPRPALAEGKMAWRLVSHLQMNYLSLMDGDDGQGAAALRQMLGLYanlaeaaaaRQI  535
             P PP+P+LAE  MAWRL+ +L  NYL+L D D+  G+ ALR++L L+    +++ +RQ+
Sbjct  479  PPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQV  538

Query  536  DGIRHCQLKPVFRRVPEPGPIVFARGIGIELEVDEQAFSGSSPWLLGSVLERVFSRLVAI  595
             ++  C+  PV RR+P +G +V++RG++ EL VDE++FSG SP L+G VLE+ ++R V+I
Sbjct  539  RSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSI  598

Query  596  NTFTEMTLTSQQRGEVGYWAPRMGKRTLI  624
            NTF++MTL S QRG+V  W+ R G+R  +
Sbjct  599  NTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

175) vasA in NC_012214


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  414 bits (1560),  Expect = 6e-117, Method: Compositional matrix adjust.
 Identities = 279/629 (45%), Positives = 430/629 (69%), Gaps = 7/629 (1%)

Query  1    MDSKQLDYYNRELAYLREMGAEFAGRYPKVAGRLGMRGDEVADPYVERLMEGFAFLTSRV  60
            MD++ L+YYNREL+YLRE GAEFA   PK+A+RLGM+G ++ADPYVER++E+F+FL++R 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFSQRLLEMIAPNYLSPTPSMAIAELQPDSRKGDISNGFLVPRGTMMDSQA  120
            QLK+DAEFPRF+QRLLE++ PNY++PTPSMA+  L PD++ GD+++G  VPR+T   S  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  LKQNGVTCSYTTAHDVMLQPVRIKSVELGGIPANVPLGELGLSQRGAVS-ALRIRIACDE  179
               +  +C + +++DV L P+ I  V L + P+++P  +  L+    V+ ALRI +    
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  180  SITLAHLSFDS-LMFFLSGPDMQALQLLELVMQHYVGGYCQSVGS-SPQRTLLGDDALQQ  237
             +++++L+  + L F+L G +  A +L+EL+    V+      G    +  +  ++++ +
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  238  EGFAADQALLPNDLRNFDGYRLLQEYFAFPARFQFISISQLRPLLQACDPQAREFDIVLL  297
            EG+ ++Q+LLP     F+G  LL+E+FA P RF F++ + L + LQ  + +  E  IV+L
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAE--IVIL  298

Query  298  LDSANPG-LERVIDHSHLALHCTPVINLFPKVAQRQKLSDSVHEYHLVVDNIRPLDYEIF  356
            L+   P+ L +  D ++++L CTPVINLFP+ + R  +++SV E HLVVD  RPLDYE+F
Sbjct  299  LNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVF  358

Query  357  SVQKLYASGERQREEQQFRPFWSTFSDDGGNYGAYFSLRREQRTLSEHAQRFGTRTGYVG  416
            SVQ + +          FRP+  T ++D GN G YFSLRRE R  SE A+R+GTRT Y G
Sbjct  359  SVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTG  418

Query  417  SEVFLSLVDEHNSPWHEDLRYLTAEVMCTSRDlp-llllqqqgqFVMPDSIPVRQLTLRK  475
            SEVFLSLVD+H++P  E+LR +T   M T+RDLP L+  + ++++ +  +IPV  + L +
Sbjct  419  SEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIR  478

Query  476  GPTPPRPALAEGKMAWRLVSHLQMNYLSLMDGDDGQGAAALRQMLGLYanlaeaaaaRQI  535
             P PP+P+LAE  MAWRL+ +L  NYL+L D D+  G+ ALR++L L+    +++ +RQ+
Sbjct  479  PPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQV  538

Query  536  DGIRHCQLKPVFRRVPEPGPIVFARGIGIELEVDEQAFSGSSPWLLGSVLERVFSRLVAI  595
             ++  C+  PV RR+P +G +V++RG++ EL VDE++FSG SP L+G VLE+ ++R V+I
Sbjct  539  RSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSI  598

Query  596  NTFTEMTLTSQQRGEVGYWAPRMGKRTLI  624
            NTF++MTL S QRG+V  W+ R G+R  +
Sbjct  599  NTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

176) EAM_0590 in NC_013971


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  413 bits (1555),  Expect = 2e-116, Method: Compositional matrix adjust.
 Identities = 277/629 (45%), Positives = 429/629 (69%), Gaps = 7/629 (1%)

Query  1    MDSKQLDYYNRELAYLREMGAEFAGRYPKVAGRLAMRGDEVADPYVERLMEGFAFLTSRV  60
            MD++ L+YYNREL+YLRE GAEFA   PK+A+RL+M+G ++ADPYVER++E+F+FL++R 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFSQRLLEMIAPNYLSPTPSMAIAELQPDSRKGDISNGFLVPRGTMMDSQA  120
            QLK+DAEFPRF+QRLLE++ PNY++PTPSMA+  L PD++ GD+++G  VPR+T   S  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  LKQNGVTCSYSTAHDVMLQPVRIKSVELGGIPANVPLGDLGLSQRGAVS-ALRIRIACDE  179
               +  +C + +++DV L P+ I  V L + P+++P  +  L+    V+ ALRI +    
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  180  SVTLAHLNFDS-LMFFLSGPDMQALQLLELVMQHYVGGYCQSVGS-NPQRTLLGDNALRQ  237
             +++++L   + L F+L G +  A +L+EL+    V+      G  + +  +  ++++ +
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  238  EGFAADQALLPNDLRNFDGYRLLQEYFAFPARFQFISIGQLRPLLQACDAQAREFDIVLL  297
            EG+ ++Q+LLP     F+G  LL+E+FA P RF F++   L + LQ  +++  E  IV+L
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAE--IVIL  298

Query  298  LDSTNPA-LERVIDHSHLALHCTPVINLFPKVAQRQKLSDSVHEYHLVVDNIRPLDYEIF  356
            L+   P  L +  D ++++L CTPVINLFP+ + R  +++SV E HLVVD  RPLDYE+F
Sbjct  299  LNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVF  358

Query  357  SVQKLYASGERQREEQQFRPFWSTFSDDGGNYGAYFSLRREQRTLSEHAQRFGTRTGYVG  416
            SVQ + +          FRP+  T ++D GN G YFSLRRE R  SE A+R+GTRT Y G
Sbjct  359  SVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTG  418

Query  417  SEVFLSLVDEHNSPWHEDLRYLTAEVMCTSRDlp-llllqqqgqFVMPDSIPVRQLTLRK  475
            SEVFLSLVD+H++P  E+LR +T   M T+RDLP L+  + ++++ +  +IPV  + L +
Sbjct  419  SEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIR  478

Query  476  GPTPPRPALAEGKIAWRLVSHLQMNYLSLMDGDNDQGAAALRQMLGLYanlaeaaaaRQI  535
             P PP+P+LAE  +AWRL+ +L  NYL+L D D+  G+ ALR++L L+    +++ +RQ+
Sbjct  479  PPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQV  538

Query  536  DGIRHCQLKPVFRRVPEPGPIVFARGIGIELEVDEQAFSGSSPWLLGSVLERVFSRLVAI  595
             ++  C+  PV RR+P +G +V++RG++ EL VDE++FSG SP L+G VLE+ ++R V+I
Sbjct  539  RSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSI  598

Query  596  NTFTEMTLTSQQRGEVGYWAPRMGKRTLI  624
            NTF++MTL S QRG+V  W+ R G+R  +
Sbjct  599  NTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

177) EAMY_3007 in NC_013961


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  413 bits (1555),  Expect = 2e-116, Method: Compositional matrix adjust.
 Identities = 277/629 (45%), Positives = 429/629 (69%), Gaps = 7/629 (1%)

Query  1    MDSKQLDYYNRELAYLREMGAEFAGRYPKVAGRLAMRGDEVADPYVERLMEGFAFLTSRV  60
            MD++ L+YYNREL+YLRE GAEFA   PK+A+RL+M+G ++ADPYVER++E+F+FL++R 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFSQRLLEMIAPNYLSPTPSMAIAELQPDSRKGDISNGFLVPRGTMMDSQA  120
            QLK+DAEFPRF+QRLLE++ PNY++PTPSMA+  L PD++ GD+++G  VPR+T   S  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  LKQNGVTCSYSTAHDVMLQPVRIKSVELGGIPANVPLGDLGLSQRGAVS-ALRIRIACDE  179
               +  +C + +++DV L P+ I  V L + P+++P  +  L+    V+ ALRI +    
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  180  SVTLAHLNFDS-LMFFLSGPDMQALQLLELVMQHYVGGYCQSVGS-NPQRTLLGDNALRQ  237
             +++++L   + L F+L G +  A +L+EL+    V+      G  + +  +  ++++ +
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  238  EGFAADQALLPNDLRNFDGYRLLQEYFAFPARFQFISIGQLRPLLQACDAQAREFDIVLL  297
            EG+ ++Q+LLP     F+G  LL+E+FA P RF F++   L + LQ  +++  E  IV+L
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAE--IVIL  298

Query  298  LDSTNPA-LERVIDHSHLALHCTPVINLFPKVAQRQKLSDSVHEYHLVVDNIRPLDYEIF  356
            L+   P  L +  D ++++L CTPVINLFP+ + R  +++SV E HLVVD  RPLDYE+F
Sbjct  299  LNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVF  358

Query  357  SVQKLYASGERQREEQQFRPFWSTFSDDGGNYGAYFSLRREQRTLSEHAQRFGTRTGYVG  416
            SVQ + +          FRP+  T ++D GN G YFSLRRE R  SE A+R+GTRT Y G
Sbjct  359  SVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTG  418

Query  417  SEVFLSLVDEHNSPWHEDLRYLTAEVMCTSRDlp-llllqqqgqFVMPDSIPVRQLTLRK  475
            SEVFLSLVD+H++P  E+LR +T   M T+RDLP L+  + ++++ +  +IPV  + L +
Sbjct  419  SEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIR  478

Query  476  GPTPPRPALAEGKIAWRLVSHLQMNYLSLMDGDNDQGAAALRQMLGLYanlaeaaaaRQI  535
             P PP+P+LAE  +AWRL+ +L  NYL+L D D+  G+ ALR++L L+    +++ +RQ+
Sbjct  479  PPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQV  538

Query  536  DGIRHCQLKPVFRRVPEPGPIVFARGIGIELEVDEQAFSGSSPWLLGSVLERVFSRLVAI  595
             ++  C+  PV RR+P +G +V++RG++ EL VDE++FSG SP L+G VLE+ ++R V+I
Sbjct  539  RSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSI  598

Query  596  NTFTEMTLTSQQRGEVGYWAPRMGKRTLI  624
            NTF++MTL S QRG+V  W+ R G+R  +
Sbjct  599  NTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

178) Psta_1836 in NC_013720


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  413 bits (1554),  Expect = 2e-116, Method: Compositional matrix adjust.
 Identities = 260/628 (42%), Positives = 431/628 (69%), Gaps = 10/628 (1%)

Query  1    MDPRLLKFYNRELQHLREMGAEFASEFPKIAGRLTLDGFECVDPYVERLLEGFAFLAARV  60
            MDPRLL +YNREL  LRE GAEFA+  PKIA+RL ++G +  DPYVER++E+F+FL+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLRIDSEFPRFTQHLFEIVYPHYLAPTPSMAVVQFEPDLKVGALADGYTIPRGESIRSLL  120
            QL+ID+EFPRFTQ+L+E+V P+Y++PTPSMAVV++ PD + G LA G T+PR+ ++ S +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  GKGETTACEYRTAQDCTLWPLEIVEAEYFS--RDAASIE--VPNVAGLKAGIRLRIRTTA  176
              GE TAC++R++QD TLWPL I E    +   D ++++  +P    + +++R+ +RT +
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  177  GLKFKD-TKLDRLTLFLRGAGDLPMHLYEQILGNPLGFVVRPTTRPIPWQVVNEASKIQP  235
             L F + +   RL ++L G   ++ HL+E +  ++++ +     +      VN    +  
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  236  RGFAENEALLPYGPRSFQGYRLLQEYFAFPQRYLFVDLTGLKSAVSRCEEQELDIIILLS  295
             G+   ++LLP +   F+G  LL+E+FA P+R+ F   TGL +++ + + +  +I+ILL+
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  296  R-AEQRLESYVSAESFSLHCTPAINLFPKSADRIHLSDKFSEHHVIPDRTRPMDFEVYEV  354
            R + ++L     A  FSL CTP INLFP+++ RI++++  +E+H++ DRTRP+D+EV+ V
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  355  KGIQGYGAEVEDEQTFFPFYASSDVNSGHDGMAYYTVHRLPRVLSTNQKKYGPRSSYIGS  414
            + ++G  AE      F P+Y + + + G++G  Y++++R PR  S + ++YG R++Y GS
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRNNDEGNHGR-YFSLRREPRRSSESARRYGTRTPYTGS  419

Query  415  EVFVSLVDGREAPYSHNLRQLAIDTLCTNRDLPLQMPVGKSTTDFTLDTGAPVNSVRCLS  474
            EVF+SLVD +EAPY++NLR++++ ++ TNRDLP  +P  ++  D+T+D++ PV +V  + 
Sbjct  420  EVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIP-RNGRDDLTVDAAIPVAGVGLIR  478

Query  475  GPTRPKPSHSFGEGDFVWRLISHLSLNYLSLVDGDERHGAAALRDILRLYGDANDAAIRK  534
             P    P  +++E +  WRLI +LS+NYL+L D D+R G+ ALRD+L L+  A+D++  +
Sbjct  479  PPR--PPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSR  536

Query  535  QIEGVRSVAArpitrriptpgpitFGRGLEIAITCDEAAFEGSGVFLLGAVLEQFFARYV  594
            Q+ ++ +  + P+TRR+P +G + +GRG+   +T DE +F G + +L+G VLE+++AR V
Sbjct  537  QVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHV  596

Query  595  SINSFTETVVHSSDRGTVMRWPTRIGRR  622
            SIN+F++  +HS +RG VM WP R G+R
Sbjct  597  SINTFSQMTLHSMQRGHVMTWPVRTGQR  624

179) H045_20430 in NC_020209


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  413 bits (1555),  Expect = 2e-116, Method: Compositional matrix adjust.
 Identities = 257/630 (41%), Positives = 428/630 (68%), Gaps = 14/630 (2%)

Query  1    MNPRLLELYNQELHHVRESAAEFAREYPKIASRLTLSGMDCADPYVERLLEGFAYLTARV  60
            M+PRLLE YN+EL  +RE++AEFA   PKIA+RL + G D ADPYVER++E+F++L+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKLDAEYPTFTHNLLEIAYPHYLAPTPSMTVVQLQTDPDEGSLASGFPLPRDTVLRAAL  120
            QLK+DAE+P FT+ LLE+  P+Y++PTPSM+VV+L  D +EG LA G  +PRDT + +++
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  GRETQTCCEYRTAHPVTLWPLQVRNAEYFGNPAAV--LGRLAASEPKAKAGLRLTLRTGA  178
                +T C++R+++ VTLWPL + +    + P+ +  L R  +++    ++LR+TLRT +
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  ELPFNSL-DLDNLPLYLSGADEQPFRLYEQLLGNACAVFARKPG---GDWVERLPKDALR  234
            EL+F+ L +   LP+YL G +  + +L+E L  +A A +A  PG   G+    L ++++ 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNL-QHPVA  239

Query  235  SRGFDDADAAMPVVARAFQGYRLLQEYFALPHRFLFVEFAELSRAVKRCDGQELELIVLF  294
              G++ +++ +P+    F+G  LL+E+FA P+RF F   + LS ++++ +G+  E+++L+
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  295  DRHEPS-LEGSVGAAQFLPFCTPAINLFPKRVDRIHLSDRVNEHHVIADRTRPMDFEIHS  353
            +R  P  L    +AAQF  FCTP INLFP+   RI++++ V E+H++ DRTRP+D+E+ S
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  354  LSGITGHGTGPEQP--FLPFYAVRDPSRYGRDQAYYTVRREPRVLSSDQRRNGPRSTYVG  411
            +  + G  +   +   F P+Y  R+    G +  Y+++RREPR  S   RR G R+ Y G
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDE-GNHGRYFSLRREPRRSSESARRYGTRTPYTG  418

Query  412  SETFVSLVDSRQAPYGHDLRQLGVTALCTNRDLPLFMSVGNGKTDFTLADSAPVLAVRCV  471
            SE F+SLVD ++APY ++LR++ VTA+ TNRDLP +++  NG+ D+T+  + PV +V  +
Sbjct  419  SEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIP-RNGRDDLTVDAAIPVAGVGLI  477

Query  472  AGPSRPRASHAHDAKAWRLISQLSLNYLSLSEQGQ--GAGALRELLRLYGDSNDAALPLQ  529
              P  P+++ A+   AWRLI QLS+NYL+L++ ++  G+ ALR+LL L+  ++D++ + Q
Sbjct  478  RPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQ  537

Query  530  IEGLREVSSKAVTRRLPMPGPIVFGRGLEITLEFDENAFRGTGVFLLGAVFERFLARYVS  589
            + +L    + +VTRRLP +G +V+GRG+   L  DE++F G + +L+G V+E+++AR VS
Sbjct  538  VRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVS  597

Query  590  INSFTETVIRTTERGEIMRWKATPGRRPTL  619
            IN+F++  +++ +RG++M W    G+R ++
Sbjct  598  INTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

180) sciC in NC_008702


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  412 bits (1550),  Expect = 4e-116, Method: Compositional matrix adjust.
 Identities = 268/628 (43%), Positives = 410/628 (66%), Gaps = 12/628 (1%)

Query  1    MDPRLLRYYNLELQHLREMGAEFARQFPKIAARLGMDGIEVADPYVERLLEGAGFLAARV  60
            MDPRLL YYN EL  LRE GAEFA   PKIAARLGM+G ++ADPYVER++E+ +FL+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKLDAEFPRFTQRLLEMLHPHYLAPTPAMLVAQFRPVPGETNLARGFTLPRGTPFRSPL  120
            QLK+DAEFPRFTQRLLE+++P+Y++PTP+M V ++ P   E +LA+G T+PR+T+F SP+
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  GKGDAAACEFRTAHEIRLWPLELVQARYFSFAADlplarlplagrvrggvrltlrttggl  180
              G+ +AC+FR+++++ LWPL + + R   ++A  P                        
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVR---LTAAPPDMPALHRYLPPNIHVAGALRITLR  177

Query  181  KFSQLSLDTLN------LHLGGAQEVAYRLCELIGAASLGALVQPAGGKGGWQRFIPSEQ  234
             F++L++  L       + L G + +A +L EL+ ++++++L   +G  +G       + 
Sbjct  178  TFGELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHP  237

Query  235  IRLTGYDDDQALLPTAHRSFGGYRLVQEYFSFPERFLFFDVGGLAPALAQADDEI-ELVL  293
            +   G + +Q+LLP A   F G  L++E+F+ PERF FF   GL+++L + ++++ E+V+
Sbjct  238  VAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVI  297

Query  294  LFGQGDAV-LESVVDNANFLLHCTPAINLFPKRTDRIHVNDSGNEFHVVADRTRPMDYEI  352
            L+ +  +  L    D A+F L CTP INLFP+ T RI+V +S  E H+V DRTRP+DYE+
Sbjct  298  LLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEV  357

Query  353  YELTEVLGHFHGSRDEQRFLPFYADFHSGTGDSQAYYSCRREPRLLSEKQKKNGPRTGYV  412
            + + EV G    +     F P+Y   +++ G+   Y+S RREPR  SE  ++ G RT Y 
Sbjct  358  FSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYT  417

Query  413  GSEVFLSLVDPREAPYRADLRQLSIQALCTNRDLPILLPQGGGQTDFSLDIAAPVEAIRC  472
            GSEVFLSLVD +EAPY  +LR++++ A+ TNRDLP L+P+  G+ D+++D A PV ++  
Sbjct  418  GSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPR-NGRDDLTVDAAIPVAGVGL  476

Query  473  VRGPSRPYGMLAEGASAWRLISHLALNHFSLVDADAHEGAGALREMLELYATSADVGMRR  532
            +R P  P   LAE   AWRLI +L++N ++L D D + G+ ALR++L+L+  + D    R
Sbjct  477  IRPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSR  536

Query  533  QVEGLKSVRVLPVVARLPFPGPICFGRGLEIALEVDETAFEGGGAFVFGSVMEHFLARHA  592
            QV +L + +  PV  RLP +G + +GRG+   L VDE +F G ++++FG V+EH++ARH 
Sbjct  537  QVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHV  596

Query  593  SLNSFTQTTLRSLTRGVVMRWEPRCGKR  620
            S+N+F+Q TL+S+ RG VM W  R G+R
Sbjct  597  SINTFSQMTLHSMQRGHVMTWPVRTGQR  624

181) PFLCHA0_c60500 in NC_021237


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  412 bits (1549),  Expect = 5e-116, Method: Compositional matrix adjust.
 Identities = 255/630 (41%), Positives = 428/630 (68%), Gaps = 14/630 (2%)

Query  1    MNPRLLELYNQELHHVRESAAEFAKEFPKIASRLTLSGMDCADPYVERLLEGFAYLTARV  60
            M+PRLLE YN+EL  +RE++AEFA   PKIA+RL + G D ADPYVER++E+F++L+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKLDAEYPTFTHNLLEIAYPHYLAPTPSMTVVQLQADPDEGSLSSGFTLERDTSLRAAL  120
            QLK+DAE+P FT+ LLE+  P+Y++PTPSM+VV+L +D +EG L+ G T+ RDT++ +++
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  GRDTQTCCEYRTAHSVTLWPLQVAQAEYFGNPSAV--LGRLAASEPRAKAGLRLTLRTGA  178
              + +T C++R+++ VTLWPL + +    + P+ +  L R  +++ +  ++LR+TLRT +
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  ELPFNSLA-LDELPLYLNGNDEQPFRLYEQLLGNVCAVFARAPG---GDWVERLPPDALR  234
            EL+F+ LA    LP+YL G++  + +L+E L  +  A +A  PG   G+    L  +++ 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNL-QHPVA  239

Query  235  SRGFDDRDAALPVVPQAFQGYRLLQEYFALPNRFLFVEFAQLGRAVQRCAGQELELIVLF  294
              G++  ++ LP+  + F+G  LL+E+FA P+RF F   + L+ ++Q+  G+  E+++L+
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  295  ERFDQS-LEGSVGTAQFVPFCTPAINLFPKRLDRIHLSDRVNEHHVIADRTRPMDFEVHS  353
            +R+    L    ++AQF  FCTP INLFP+   RI++++ V E+H++ DRTRP+D+EV S
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  354  LTAISGHGTGPEQP--FLPFYAVRDPSRYGRDQSYYIVRREPRVLSSDQRRNGPRSTYIG  411
            +  + G  +   +   F P+Y  R+    G +  Y+ +RREPR  S   RR G R+ Y G
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDE-GNHGRYFSLRREPRRSSESARRYGTRTPYTG  418

Query  412  SESFVSLVDSQQAPYRHDLRQLGVSALCTNRDLPLFMNTGNGKTDFTLADSAPVQAIRCL  471
            SE F+SLVD ++APY ++LR++ V+A+ TNRDLP ++   NG+ D+T+  + PV ++  +
Sbjct  419  SEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPR-NGRDDLTVDAAIPVAGVGLI  477

Query  472  AGPSRPRPSHAHDGKAWRLISQLSLNYLSLSEQGQ--GAAALRELLRLYGDSNDAALQLQ  529
              P  P+P+ A+   AWRLI QLS+NYL+L++ ++  G+ ALR+LL L+  ++D++   Q
Sbjct  478  RPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQ  537

Query  530  IEGLREVSSKAVTRRLPMPGPIVFGRGLEITLEFDENAFRGTGVFLLGAVFERFLARYVS  589
            + +L    + +VTRRLP +G +V+GRG+   L  DE++F G + +L+G V+E+++AR VS
Sbjct  538  VRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVS  597

Query  590  INSFTETVIRTTERGEIMRWKAKPGRRPTL  619
            IN+F++  +++ +RG++M W  + G+R ++
Sbjct  598  INTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

182) tssF in NC_004129


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  412 bits (1549),  Expect = 5e-116, Method: Compositional matrix adjust.
 Identities = 255/630 (41%), Positives = 428/630 (68%), Gaps = 14/630 (2%)

Query  1    MNPRLLELYNQELHHVRESAAEFAKEFPKIASRLTLSGMDCADPYVERLLEGFAYLTARV  60
            M+PRLLE YN+EL  +RE++AEFA   PKIA+RL + G D ADPYVER++E+F++L+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKLDAEYPTFTHNLLEIAYPHYLAPTPSMTVVQLQADPDEGSLSSGFTLERDTSLRAAL  120
            QLK+DAE+P FT+ LLE+  P+Y++PTPSM+VV+L +D +EG L+ G T+ RDT++ +++
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  GRDTQTCCEYRTAHSVTLWPLQVAQAEYFGNPSAV--LGRLAASEPRAKAGLRLTLRTGA  178
              + +T C++R+++ VTLWPL + +    + P+ +  L R  +++ +  ++LR+TLRT +
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  ELPFNSLA-LDELPLYLNGNDEQPFRLYEQLLGNVCAVFARAPG---GDWVERLPPDALR  234
            EL+F+ LA    LP+YL G++  + +L+E L  +  A +A  PG   G+    L  +++ 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNL-QHPVA  239

Query  235  SRGFDDRDAALPVVPQAFQGYRLLQEYFALPNRFLFVEFAQLGRAVQRCAGQELELIVLF  294
              G++  ++ LP+  + F+G  LL+E+FA P+RF F   + L+ ++Q+  G+  E+++L+
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  295  ERFDQS-LEGSVGTAQFVPFCTPAINLFPKRLDRIHLSDRVNEHHVIADRTRPMDFEVHS  353
            +R+    L    ++AQF  FCTP INLFP+   RI++++ V E+H++ DRTRP+D+EV S
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  354  LTAISGHGTGPEQP--FLPFYAVRDPSRYGRDQSYYIVRREPRVLSSDQRRNGPRSTYIG  411
            +  + G  +   +   F P+Y  R+    G +  Y+ +RREPR  S   RR G R+ Y G
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDE-GNHGRYFSLRREPRRSSESARRYGTRTPYTG  418

Query  412  SESFVSLVDSQQAPYRHDLRQLGVSALCTNRDLPLFMNTGNGKTDFTLADSAPVQAIRCL  471
            SE F+SLVD ++APY ++LR++ V+A+ TNRDLP ++   NG+ D+T+  + PV ++  +
Sbjct  419  SEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPR-NGRDDLTVDAAIPVAGVGLI  477

Query  472  AGPSRPRPSHAHDGKAWRLISQLSLNYLSLSEQGQ--GAAALRELLRLYGDSNDAALQLQ  529
              P  P+P+ A+   AWRLI QLS+NYL+L++ ++  G+ ALR+LL L+  ++D++   Q
Sbjct  478  RPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQ  537

Query  530  IEGLREVSSKAVTRRLPMPGPIVFGRGLEITLEFDENAFRGTGVFLLGAVFERFLARYVS  589
            + +L    + +VTRRLP +G +V+GRG+   L  DE++F G + +L+G V+E+++AR VS
Sbjct  538  VRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVS  597

Query  590  INSFTETVIRTTERGEIMRWKAKPGRRPTL  619
            IN+F++  +++ +RG++M W  + G+R ++
Sbjct  598  INTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

183) ETA_06310 in NC_010694


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  410 bits (1541),  Expect = 2e-115, Method: Compositional matrix adjust.
 Identities = 280/633 (45%), Positives = 433/633 (69%), Gaps = 15/633 (2%)

Query  1    MDSKQLDYYNRELAYLREMGAEFAGRYPKVAGRLGIRGDEVADPYVERLMEGFAFLTSRV  60
            MD++ L+YYNREL+YLRE GAEFA   PK+A+RLG++G ++ADPYVER++E+F+FL++R 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFSQRLLEMIAPNYLSPTPSMAIAELQPDSRKGDISNGFLVPRGTMMDSQA  120
            QLK+DAEFPRF+QRLLE++ PNY++PTPSMA+  L PD++ GD+++G  VPR+T   S  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  LKQNGVTCSYTTAHDVMLQPVRIKSVELGGIPADVPLGELGLSQRGAVS-ALRIRIACDE  179
               +  +C + +++DV L P+ I  V L + P+D+P  +  L+    V+ ALRI +    
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  180  SVTLSHLSFDS-LMFFLSGPDMQALQLLELVMQHYVGGYCQSLGSSPQR--TPLG---DD  233
             +++S+L+  + L F+L G +  A +L+EL+    V+    +L++ P +    L    ++
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVA----TLAGEPGHFDGELNVNLQH  236

Query  234  ALRQEGFAADQALLPNDLRNFDGYRLLQEYFAFPARFQFISIGQLRPLLQACDPQAREFD  293
            ++ +EG+ ++Q+LLP     F+G  LL+E+FA P RF F++   L + LQ  + +  E  
Sbjct  237  PVAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAE--  294

Query  294  IVLLLDSANPG-LERVIDHSHLALHCTPVINLFPKVAQRQKLSDSVHEYHLVVDNIRPLD  352
            IV+LL+   P+ L +  D ++++L CTPVINLFP+ + R  +++SV E HLVVD  RPLD
Sbjct  295  IVILLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLD  354

Query  353  YEIYSVQKLYASGERQREEQQFRPFWSTFSDDGGNYGAYFSLRREQRTLSERAQRFGTRT  412
            YE++SVQ + +          FRP+  T ++D GN G YFSLRRE R  SE A+R+GTRT
Sbjct  355  YEVFSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRT  414

Query  413  GYVGSEVFLSLVDEHNSPWHEDLRYLTAEVMCTSRDlp-llllqqqgqFVMPDSIPVRQL  471
             Y GSEVFLSLVD+H++P  E+LR +T   M T+RDLP L+  + ++++ +  +IPV  +
Sbjct  415  PYTGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGV  474

Query  472  TLRKGPTPPRPALAEGKIAWRLVSHLQMNYLSLMDGDDGQGAAALRQMLGLYanlaeaaa  531
             L + P PP+P+LAE  +AWRL+ +L  NYL+L D D+  G+ ALR++L L+    +++ 
Sbjct  475  GLIRPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQ  534

Query  532  aRQIDGIRHCQLKPVFRRVPEPGPIVFARGIGIELEVDEQAFSGSSPWLLGSVLERVFSR  591
            +RQ+ ++  C+  PV RR+P +G +V++RG++ EL VDE++FSG SP L+G VLE+ ++R
Sbjct  535  SRQVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIAR  594

Query  592  LVAINTFTEMTLTSQQRGDVGYWAPRMGKRTLI  624
             V+INTF++MTL S QRG+V  W+ R G+R  +
Sbjct  595  HVSINTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

184) Psefu_0247 in NC_015556


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  409 bits (1538),  Expect = 3e-115, Method: Compositional matrix adjust.
 Identities = 256/630 (41%), Positives = 415/630 (66%), Gaps = 14/630 (2%)

Query  1    MNPRLLGYYNQELQHIRESAEEFAREFPKIASRLSLSGVECADPYVERLLEGFAYLTARV  60
            M+PRLL YYN+EL  +RE++ EFA   PKIA+RL++ G + ADPYVER++E+F++L+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKLDAEYPTFTHNLLEIAYPHYLAPTPSMTVVQLCADPNEGSLSSGFTLERGASLRGAL  120
            QLK+DAE+P FT+ LLE+  P+Y++PTPSM+VV+L +D +EG L+ G T+ R++++ +++
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  GSEAQTACEYRTCQPVTLWPLEVTQASYFGNPS--TQLGRLAASEPGAKAAVRVRLRTGA  178
                +TAC++R+ Q VTLWPL + +    + P+    L R  +++    +A+R+ LRT +
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  GLPFNAL-DLDELTFYLHGADEQPFRLYEQLMGNVCALFVRAV---DGSWVERLPPDSLC  234
             L+F+ L +   L FYL G +  + +L+E L  +  A +       DG     L  +++ 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNL-QHPVA  239

Query  235  PRGFDDQDAALPVVPRAFQGYRLLQEYFALPNRFLFVELTGLKRAVQRNASQELELVVLF  294
              G++  ++ LP+    F+G  LL+E+FA P+RF F   TGL  ++Q+  ++  E+V+L+
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  295  NRLDNS-LENSIGAEQFRLFCTPAINLFARRADRIHLSDRVHEHQIIADRTRPQDFEIHS  353
            NRL    L +  +A QF LFCTP INLF+R + RI++++ V E++++ DRTRP D+E+ S
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  354  VTEVSGHGSGPEQP--FQPFYAVRDPSRYGREQAWYSLRREPRVLSSKQRRNGPRSTYVG  411
            V EV G  +   +   F+P+Y  R+    G +   +SLRREPR  S   RR G R+ Y G
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNNDE-GNHGRYFSLRREPRRSSESARRYGTRTPYTG  418

Query  412  SETFISLVDANQAPYRHDLRQLGIGTLCTNRDLPLSMPIGGTRSDFTLEDSAPVVAVRCL  471
            SE F+SLVD ++APY ++LR++ + ++ TNRDLP  +P  G R D+T++ + PV +V  +
Sbjct  419  SEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNG-RDDLTVDAAIPVAGVGLI  477

Query  472  AGPSRPRASRAHDASAWRLISQLSLNYLSLSEQGQ--GAAALRELLRLYGDVGDNALQLQ  529
              P  P+++ A+   AWRLI QLS+NYL+L++ ++  G+ ALR+LL L+    D++   Q
Sbjct  478  RPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQ  537

Query  530  IDGLRKVTAQPCTRRLPMPGPIVFGRGLEIGLEFDENAFRGTGMFLLGSVLERFLTRYVS  589
            + +L    + P TRRLP +G +V+GRG+   L  DE++F G + +L+G VLE++++R VS
Sbjct  538  VRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVS  597

Query  590  INSFTETVLRTTERGEVMRWRAKPGCRPTL  619
            IN+F++  L++ +RG+VM W  + G R ++
Sbjct  598  INTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

185) BYI23_C003640 in NC_016590


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  408 bits (1534),  Expect = 8e-115, Method: Compositional matrix adjust.
 Identities = 262/629 (42%), Positives = 429/629 (69%), Gaps = 19/629 (3%)

Query  1    MNPDLIQYYSRELQHIREMGGEFAQAFPKIAGRLGLEGFECADPYVERLLEGFGFLAARV  60
            M+P L++YY+REL  +RE G+EFA   PKIA+RLG++G + ADPYVER++E+F+FL+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QMKIDAEFPRFTQHLAELVYPHYLAPTPAMTVVHVQPDMTHPALAEGVPVPRGTALHGRL  120
            Q+KIDAEFPRFTQ+L E+V P+Y++PTP+M+VV + PD  +  LA GV VPR+TA+ + +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  DGERATRCEFRTAHGLTLWPIELSAARLFTHTGAMPGIEARLPRGVK--AGLRLTLRASG  178
                 T C+FR+++++TLWP+ +   RL +    MP+++  LP  +   ++LR+TLR+ G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  GRKLRDLA-IDRLPMYLRGNDGVAAKLYELLVGSTLGVVAG-----DAVLPASALRPL--  230
               + +LA   RLP YL G++ +A+ L+ELL  S+++ +AG     D+ L  +  +P+  
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  231  -GFSDEEALLPVSEQSFPGYRLLQEYFACPQRFMFIGIEGLRAQLARCDKSEIELVVLLS  289
             G+   ++LLP++ + F G  LL+E+FACP+RF F+   GL A L + + +  E+V+LL+
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  290  RADTA-LEQVVDQANFALHCTPAINLFPRRADRIAVTGEQFEHHVVVDRTRPRDFEVVRI  348
            R     L +  D A+F+L CTP INLFPR + RI VT    E+H+VVDRTRP D+EV  +
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  349  QGVTGYRAGGG-EIAFQPFYRMRDLGIDEPDAAFYQVRREKRLPSARENERGVRSAARSS  407
            Q V G  A     + F+P+Y+ R+   +  ++ ++ +RRE R    R +E + R ++R++
Sbjct  361  QEVEGLEAETTRKMIFRPLYHTRN-NDEGNHGRYFSLRREPR----RSSESARRYGTRTP  415

Query  408  YAGSETWIALVDTRESPYPADLHQLGISVLCTNRDLTLTMPLGRGETDFTLELEapvaav  467
            Y+GSE  ++LVD +E+PYP +L+++ ++ + TNRDL   +P   G  D+T++   PVA+V
Sbjct  416  YTGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIP-RNGRDDLTVDAAIPVAGV  474

Query  468  rcvaapsrpLPSYAQGAVAWRllshlslnhgslVDDADGSGARAMRDLLALYAPEGDSAA  527
              + +P  P P+ A+  +AWRL+ +LS+N  +L D  + +G++A+RDLL L+ P  DS+ 
Sbjct  475  GLIRPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQ  534

Query  528  ARQIDALRSIRSNAVTRRLPSRGPIVFGRGLALDVLLDESGFEGASAFLFGAVLARFFEQ  587
            +RQ+ +L + ++ +VTRRLP+ G +V+GRG++ ++ +DE GF G S++LFG VL +++ +
Sbjct  535  SRQVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIAR  594

Query  588  YVSLNAFTETIVSSVTRGEIMRWAPESGR  616
             VS+N+F++  + S+ RG++M W+  +G+
Sbjct  595  HVSINTFSQMTLHSMQRGHVMTWPVRTGQ  623

186) PAU_03800 in NC_012962


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  407 bits (1530),  Expect = 2e-114, Method: Compositional matrix adjust.
 Identities = 265/630 (43%), Positives = 412/630 (66%), Gaps = 15/630 (2%)

Query  1    MHEKLLEYYNRELAWLREMGGEFARHYPGVAGRLGMQGDDVTDPYVERLMEGVAFLTSRI  60
            M+ +LLEYYNREL+ LRE G+EFA   P +A+RLGMQG D++DPYVER++E+ +FL++R 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFSAQLLEALYPNYLAGLPSMAIVELQPDPTKGDLSKGFPVPRGSLMESLA  120
            QLK+DAEFPRF+ +LLE + PNY++  PSMA+V L PD   GDL+KG  VPR++   S  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  LKKKGLNCCYRTAQDVTLQPLRLLQVELGGVPADIP-----LAALGGANVQGALRIQLSC  175
                   C +R++QDVTL PL + +V L + P+D+P     L++    +V GALRI L  
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPP--NIHVAGALRITLRT  178

Query  176  FDNVSLGELQ-CDELMFYLSGGDIPALQLLELLMAHGQGVLCQIPGSSVQRLLLP-SQVL  233
            F++++++EL     L FYL G +  A +L+ELL + + + L   PG     L +   + +
Sbjct  179  FGELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPV  238

Query  234  RHEGFASEQALLPVDLRNVEAYRLLQEYFAFPARFQFFSISGLQPLLAQAGKQQRLEIQI  293
             HEG+ + Q+LLP+     ++  LL+E+FA P RF FF+ +GL + L Q  + +  EI I
Sbjct  239  AHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGL-QKVQGNVAEIVI  297

Query  294  LLDVRSPQ-LEKVVDVSHLALHCTPAINLFPRTAEPMILNEQQHEYHVVVDNMRPLDYEV  352
            LL+  +P+ L    D ++++L CTP INLFPRT+  + + +   E H+VVD  RPLDYEV
Sbjct  298  LLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEV  357

Query  353  FSVTALRGIGTQHDGDQRYIFHPLYHTQHDDALVNAGYFSIRRESRLLPQDVNRYGMRSD  412
            FSV  + G+ +  +  ++ IF+PLYHT+++D   ++ YFS+RRE+R  ++   RYG R+ 
Sbjct  358  FSVQEVEGLEA--ETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTP  415

Query  413  YLGSEVYVALADEHHPPWRSDLKYLSAEVLCTNRDLPLLLQRQAQESLVMQDSVPVSGVQ  472
            Y GSEV+++L D+H++P   +L+ ++   + TNRDLP L+ R++++ L ++ ++PV+GV 
Sbjct  416  YTGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVG  475

Query  473  LRKGPSNPRPALAESRICWQLINQLQLNYFSLQDCTTEQGETELRRLLRFHASQADAVIA  532
            L + P  P+P+LAE  + W+LI QL +NY++L D     G   LR LL +  +  D+  +
Sbjct  476  LIRPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQS  535

Query  533  QQINGIRCCRLQAQNRHMTGTPL--FQRGVNVALEVDEQAFSGRSPWLMGSVLAHLFSRL  590
            +Q+ ++  C+  +  R++ G+ L  + RGV+  L VDE++FSG SP L G VL H ++R 
Sbjct  536  RQVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARH  595

Query  591  VTINSFAETTLSSVQRGTIGFWSGRGGVRT  620
            V+IN+F++ TL S+QRG +  W+ R G R 
Sbjct  596  VSINTFSQMTLHSMQRGHVMTWPVRTGQRG  625

187) vasA in NC_017445


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  406 bits (1527),  Expect = 3e-114, Method: Compositional matrix adjust.
 Identities = 280/629 (45%), Positives = 430/629 (69%), Gaps = 7/629 (1%)

Query  1    MDSKQLDYYNRELAYLREMGAEFAGRYPKVAGRLGMRGDEVADPYVERLMEGFAFLTSRV  60
            MD++ L+YYNREL+YLRE GAEFA   PK+A+RLGM+G ++ADPYVER++E+F+FL++R 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKMDAEFPRFSQRLLEMIAPNYLSPTPSMAIAELQPDSRKGDISNGFLVPRGTMMESQA  120
            QLK+DAEFPRF+QRLLE++ PNY++PTPSMA+  L PD++ GD+++G  VPR+T   S  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  LKQNGVTCSYTTAHDVMLQPVRIKSVELGGIPANVPLGELGLSQRGAVT-ALRIRIACDE  179
               +  +C + +++DV L P+ I  V L + P+++P  +  L+    V+ ALRI +    
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  180  SVTLAHLSFDS-LMFFLSGPDmqalqllellmqHYVGGYCQSVGS-SPQRTLLGDDALQQ  237
             +++++L+  + L F+L G +  A +L+ELL    V+      G    +  +  ++++ +
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPVAH  240

Query  238  EGFAADQALLPNDLRNFDGYRLLQEYFAFPARFQFISISQLRPLLQACDPQAREFDIVLL  297
            EG+ ++Q+LLP     F+G  LL+E+FA P RF F++ + L + LQ  + +  E  IV+L
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAE--IVIL  298

Query  298  LDSANPG-LERVIDHSHLALHCTPVINLFPKVAQRQKLSDSVHEYHLVVDNIRPLDYEIF  356
            L+   P+ L +  D ++++L CTPVINLFP+ + R  +++SV E HLVVD  RPLDYE+F
Sbjct  299  LNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVF  358

Query  357  SVQKLYASGERQREEQQFRPFWSTFSDDGGNYGAYFSLRREQRTLSEHAQRFGTRTGYVG  416
            SVQ + +          FRP+  T ++D GN G YFSLRRE R  SE A+R+GTRT Y G
Sbjct  359  SVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTG  418

Query  417  SEVFLSLVDEHNSPWHEDLRYLTAEVMCTSRDlp-llllqqqgqFVMPDSIPVRQLTLRK  475
            SEVFLSLVD+H++P  E+LR +T   M T+RDLP L+  + ++++ +  +IPV  + L +
Sbjct  419  SEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAGVGLIR  478

Query  476  GPTPPRPALAEGKMAWRLVSHLQMNYLSLMDGDDGQGAAALRQMLGLYanlaeaaaaRQI  535
             P PP+P+LAE  MAWRL+ +L  NYL+L D D+  G+ ALR++L L+    +++ +RQ+
Sbjct  479  PPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQV  538

Query  536  DGIRHCQLKPVFRRVPEPGPIVFARGIGIELEVDEQAFSGSSPWLLGSVLERVFSRLVAI  595
             ++  C+  PV RR+P +G +V++RG++ EL VDE++FSG SP L+G VLE+ ++R V+I
Sbjct  539  RSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVSI  598

Query  596  NTFTEMTLTSQQRGEVGYWAPRMGKRTLI  624
            NTF++MTL S QRG+V  W+ R G+R  +
Sbjct  599  NTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

188) TKWG_23540 in NC_017964


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  403 bits (1516),  Expect = 2e-113, Method: Compositional matrix adjust.
 Identities = 250/600 (42%), Positives = 404/600 (68%), Gaps = 24/600 (4%)

Query  1    MEQRFLDYYNRELAYIREMGKEFADHYPKIAGRLGMNGIEVADPYVERLLEGFSFLTARI  60
            M+ R+L+YYNREL+Y+RE G EFA   PKIA+RLGM+G ++ADPYVER++E+FSFL+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   HMKMDAEFPQFSQRLLEVVYPNYLAPTPSMAVVQVSPSMNEGSLAKGFTLPKGTVMRGRI  120
            ++K+DAEFP+F+QRLLEVV PNY++PTPSMAVV++ P  +EG LAKG T+P++T   + I
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  PKTEQTPCEFVTGHALTLWPLQVTAAELSGVPPDLPLKRMNLNNRNQPVRSSLRIRLEIK  180
            P  E+T+C+F +++ +TLWPL +    L++ PPD+P  +  L    + V ++LRI L   
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIH-VAGALRITLRTF  179

Query  181  GGVKLHEFK-LDQLVFHLNGQDIHMQRLLELIMGHTITVLCHDADKPVKWINRINVN---  236
            G + + E+    +L F L G++    +L+EL+   +++ L   A+ P      +NVN   
Sbjct  180  GELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATL---AGEPGHFDGELNVNLQH  236

Query  237  DVRHEGFEGDQALLPAEARIFQGYRIIQEYFAFPTRFMFFSVNNMQKALKLPaaiaagsa  296
             V HEG+E +Q+LLP    +F+G  +++E+FA P RF FF+   +  +L+          
Sbjct  237  PVAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQ----------  286

Query  297  naaaGQESRSFELTFLFDKDMPE-LEGNVTAENLALHCTPVVNLFPKKADRITISPNTHE  355
                  ++   E+ +L+++  P+ L  +  A +++L CTPV+NLFP+ + RI ++ +  E
Sbjct  287  ----KVQGNVAEIVILLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTE  342

Query  356  YHLVVDRTRPLDFEVYNTTRVAGYSSVSDLTEKEFRPFFGSLGSDTDDYGAYYSMRREPR  415
             HLVVDRTRPLD+EV++   V G  + +      FRP++ +  +D ++ G Y+S+RREPR
Sbjct  343  QHLVVDRTRPLDYEVFSVQEVEGLEAETT-RKMIFRPLYHTRNNDEGNHGRYFSLRREPR  401

Query  416  LLSDTAARNGARTGYIGSEVFISLVDKHQAPFSEDLRHLSMDVLCTNRDLPMLMPIGQKN  475
              S++A R G+RT Y GSEVF+SLVD+H+AP++E+LRH+++  + TNRDLP L+P   ++
Sbjct  402  RSSESARRYGTRTPYTGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRD  461

Query  476  DLALRVSAPIEGIKILRGPSRPRPALAQGAYAWHLISHLGLNYLSLIDLDTEKGAQTLRE  535
            DL++  + P+ G+ ++R P  P+P+LA+   AW+LI +L++NYL+L DLD   G+Q+LR+
Sbjct  462  DLTVDAAIPVAGVGLIRPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRD  521

Query  536  MLKIYANIADPAVAKQINGvrhvrveavhhrLPVPGPIVFGRGARIHLEVDEGHFPVSAP  595
            +L+++    D++ ++Q+ ++   +  +V +RLP +G +V+GRG   +L VDE  F+  +P
Sbjct  522  LLNLFIPAHDSPQSRQVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISP  581

189) BC1001_3679 in NC_015137


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  400 bits (1504),  Expect = 2e-112, Method: Compositional matrix adjust.
 Identities = 267/635 (43%), Positives = 426/635 (68%), Gaps = 14/635 (2%)

Query  1    MDPDFPKYFQKQLRYITESFSGEFAAKHPKVAARLGARAGEVRDPYVQRLLQSFAFTAAR  60
            MDP +  Y++++L Y+ E+ ++EFA+ HPK+AARLG ++ ++ DPYV+R++++F+F +AR
Sbjct  1    MDPRLLEYYNRELSYLRET-GAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSAR  59

Query  61   AEMNIDRMADPFILRQLEAVNQNYVAPLPSMAVVRFYPDLEAAHSPQGHLLPRGTQLTLC  120
            ++++ID     F  R LE VN NYV+P PSMAVV++YPD + ++ ++G  +PR+T +   
Sbjct  60   TQLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSP  119

Query  121  KGQDGRTASQFRTSQDVRLWPLRIEFARPAGVPADVPLLHRYVADLSKVRGALRLRFSTI  180
              ++  TA QFR+SQDV LWPL IE  R ++ P+D+P LHRY++    V GALR+ + T+
Sbjct  120  IPEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTF  179

Query  181  NGTPLRELRGLDRLPVYLCGEARLASQLFELIHTSVIGMVMGVPGAFETGELYGMRQPNL  240
               ++ EL G  RLP YLCGE R+AS+LFEL+HTS ++ + G PG F+      +++P  
Sbjct  180  GELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHP--  237

Query  241  PQMGIDYEGLEPQQSMLRPVYPRFHGHMLVHEYFACPPRFWFFALTGLQAGLRQLPGSSV  300
                +  EGLEP Q++L      FHGH L+HE+FACP RF FF+ TGL AGL+++ G+  
Sbjct  238  ----VAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVA  293

Query  301  EIILLLSREAAT-LDQQVDASQFALGCTPAVNLFEASSERLCIDPGQDEHRLVPFVAAPD  359
            EI++LL+R ++  L +Q DA+QF+L CTP +NLF  ++ R+ +  +  E++LV   + P 
Sbjct  294  EIVILLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPL  353

Query  360  DFEVHSVNSVEGQFDDESEVVRFEPLDAALPDDTLRDARFFTLRRELHKAADSERRYGTL  419
            D+EV SV+ VEG   + +  + F PL  +  +D   ++R+F+LRRE +++++S RRYGT 
Sbjct  354  DYEVFSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTR  413

Query  420  RDFVRTRLYLRLLARDHQPGNARIRHLTLNAWLTNGNLPCVTPPNGvddlvvkdakavaa  479
              +  + ++L L+ +++ P    +RH+T+ A +TN +LPC+ P NG DDL V  A +VA+
Sbjct  414  TPYTGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAG  473

Query  480  vGFVraptaprpplarGDAAWNLLRQLTLEYGVFDDDFSEPSPGEVLRETLRPYLGAGEA  539
            VG++R+P +P+PPLA  + AW L+RQL+++Y  +  D+ + + G+ LR+ L  ++ A ++
Sbjct  474  VGLIRPPRPPQPPLAEREMAWRLIRQLSFNYLPL-ADLDHRTGGQALRDLLNLFIPAHDS  532

Query  540  SVMARQLDGLIGAAAQPVHAVHRWDGDP--QHARGIEVRLTFDEEGFDGGSPFTFALALE  597
            +  +RQ+ +LIG  + PV   +R  G      +RG+   LT DEEGF G SP+ F+L LE
Sbjct  533  P-QSRQVRSLIGCKTTPV--TRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLE  589

Query  598  RYVAAYVSGHSFTRTALCTKQRGLIYTWPTRDGSR  632
            +Y+A  VS ++F++ +L + QRG + TWP R G R
Sbjct  590  HYIARHVSINTFSQMTLHSMQRGHVMTWPVRTGQR  624

190) BC1001_4333 in NC_015137


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  389 bits (1462),  Expect = 3e-109, Method: Compositional matrix adjust.
 Identities = 267/635 (43%), Positives = 427/635 (68%), Gaps = 14/635 (2%)

Query  1    MDPDFPKYFQKQLRYITESFSGEFAAKHPKVAARLGARAGEVRDPYVQRLLQSFAFTAAR  60
            MDP +  Y++++L Y+ E+ ++EFA+ HPK+AARLG ++ ++ DPYV+R++++F+F +AR
Sbjct  1    MDPRLLEYYNRELSYLRET-GAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSAR  59

Query  61   AEMNIDRMADPFILRQLEAVNQNYVAPLPSMAVVRFYPDLEAAHSPQGHLLPRGTQLTLC  120
            ++++ID     F  R LE VN NYV+P PSMAVV++YPD + ++ ++G  +PR+T +   
Sbjct  60   TQLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSP  119

Query  121  KGQDGRTASQFRTSQDVRLWPLRIEFARPAGVPADVPLLHRYVADLSKVRGALRLRFSTI  180
              ++  TA QFR+SQDV LWPL IE  R ++ P+D+P LHRY++    V GALR+ + T+
Sbjct  120  IPEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTF  179

Query  181  NGTPlrelrglgrlPVYLCGEARLASQLFELIHTSVIGMVMGVPGAFETGELYGMRQPNL  240
               ++ EL G +RLP YLCGE R+AS+LFEL+HTS ++ + G PG F+      +++P  
Sbjct  180  GELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHP--  237

Query  241  PQMGIDYEGLEPQQSMLRPVYPRFHGHMLVHEYFACPPRFWFFALTGLQAGLRQLPGSSV  300
                +  EGLEP Q++L      FHGH L+HE+FACP RF FF+ TGL AGL+++ G+  
Sbjct  238  ----VAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVA  293

Query  301  EIILLLSREAAT-LDQQVDASQFALGCTPAVNLFEASSERLCIDPGQDEHRLVPFVAAPD  359
            EI++LL+R ++  L +Q DA+QF+L CTP +NLF  ++ R+ +  +  E++LV   + P 
Sbjct  294  EIVILLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPL  353

Query  360  DFEVHSVNSVEGQFDDESEVVRFEPLDAALPDDTLRDARFFTLRRELHKAADSERRYGTL  419
            D+EV SV+ VEG   + +  + F PL  +  +D   ++R+F+LRRE +++++S RRYGT 
Sbjct  354  DYEVFSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTR  413

Query  420  RDFVRTRLYLRLLARDHQPGNARIRHLTLNAWLTNGNLPCVTPPNGvddlvvkdakavaa  479
              +  + ++L L+ +++ P    +RH+T+ A +TN +LPC+ P NG DDL V  A +VA+
Sbjct  414  TPYTGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDAAIPVAG  473

Query  480  vGFVraptaprpplarGDAAWNLLRQLTLEYGVFDDDFSEPSPGEVLRETLRPYLGAGEA  539
            VG++R+P +P+PPLA  + AW L+RQL+++Y  +  D+ + + G+ LR+ L  ++ A ++
Sbjct  474  VGLIRPPRPPQPPLAEREMAWRLIRQLSFNYLPL-ADLDHRTGGQALRDLLNLFIPAHDS  532

Query  540  SVMARQLDGLIGAAAQPVHAVHRWDGDP--QHARGIEVRLTFDEEGFDGGSPFTFALALE  597
            +  +RQ+ +LIG  + PV   +R  G      +RG+   LT DEEGF G SP+ F+L LE
Sbjct  533  P-QSRQVRSLIGCKTTPV--TRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLE  589

Query  598  RYVAAYVSGHSFTRTALCTKQRGLIYTWPTRDGSR  632
            +Y+A  VS ++F++ +L + QRG + TWP R G R
Sbjct  590  HYIARHVSINTFSQMTLHSMQRGHVMTWPVRTGQR  624

191) RHECIAT_PB0000212 in NC_010996


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  387 bits (1455),  Expect = 1e-108, Method: Compositional matrix adjust.
 Identities = 254/634 (41%), Positives = 432/634 (69%), Gaps = 17/634 (2%)

Query  1    MDPRLLRLYNDELAYMREMGAEFARAFPKVAARLGMESAEVADPYVERLLEGFAFMAARV  60
            MDPRLL  YN EL+Y+RE GAEFA   PK+AARLGM+++++ADPYVER++E+F+F++AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKLQSRFPEFTQHLLEMVYPHFLPPLPSMTIVRFEPDQDAGRLENGYLVPRGTKLLGRL  120
            QLK+++ FP FTQ+LLE+V P+++ P PSM++V++ PD + G L +G  VPR+T +++ +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  APGAVTHCEFRTAHDVHLWPIVVSAADYFSTPGQIAALD--LPARQDAKAALRLRLRTTN  178
            + G  T C+FR+++DV LWP+ +      ++P +++AL+  LP+  +  +ALR+ LRT  
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  179  GMPFNKL-GLEALTLHLTGPGGIGAALAEQLLGDACNIIARPVGRPIPWQEKIPV---HA  234
             ++F+ L G   L + L G   I++ L E L   A   +A   G P   +  + V   H+
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLA---GEPGHFDGELNVNLQHP  237

Query  235  LQQRGLEPSCALLPEVPRSFDGYRLLQEYFALAERTLFVEVSGLADAVALSTAETLEIVF  294
            + + GLEP+ +LLP     F+G  LL+E+FA +ER  F   +GL+ ++    ++  EIV+
Sbjct  238  VAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVI  297

Query  295  ALRRVEP-RLERQLGPQNIVLFATPAINLFERQADLVHVSDKNTEHHVIVDRMRPLDFEV  353
             L R+ P +L +Q ++ ++ LF TP INLF R +  ++V++  TE+H++VDR RPLD+EV
Sbjct  298  LLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEV  357

Query  354  HSILEMSGDGAKNEAAPVRFYPFYSISAHGQEEQHSRYYAIRREQRLMSEHQRLNGARTG  413
             S+ E+ G  A      + F P+Y  + + +E +H+RY+++RRE R  SE  R  G+RT 
Sbjct  358  FSVQEVEGLEAETTRKMI-FRPLYH-TRNNDEGNHGRYFSLRREPRRSSESARRYGTRTP  415

Query  414  YIGSETFVSLVDRQAAPYSAELRHLSVNCLCSNRDLALLLP-IGRDETDFTLEIGAPVTA  472
            Y GSE F+SLVD++ APY+ +LRH++V  + +NRDL+ L+P  GRD  D+T++ + PV++
Sbjct  416  YTGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRD--DLTVDAAIPVAG  473

Query  473  TRCVSPPSRPRHSFANGDITWRLISHLSLNYLSISNSDRNDHRGaealrellrlYVDPVN  532
               + PP  P+ ++A+ +++WRLI +LS+NYL++++ D+  + G++ALR+LL L++ + +
Sbjct  474  VGLIRPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDH--RTGGQALRDLLNLFIPAHD  531

Query  533  AFASRQIDGIREIRSRPAVRRLSSGGQAAVARGIEVGIILDEAAFEGVGIFPLASVLNQF  592
            +  SRQ+ ++   ++ P  RRL+++G    +RG+   + +DE +F G++ + ++ VL+++
Sbjct  532  SPQSRQVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHY  591

Query  593  FAKYVSINSFTEMVVSTLQRGEVMRWPTMAGRRA  626
            +A+ VSIN+F++M + ++QRG+VM WP  +G+R+
Sbjct  592  IARHVSINTFSQMTLHSMQRGHVMTWPVRTGQRG  625

192) bgla_2g03930 in NC_015376


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  386 bits (1453),  Expect = 2e-108, Method: Compositional matrix adjust.
 Identities = 263/629 (42%), Positives = 423/629 (68%), Gaps = 8/629 (1%)

Query  1    MDPRLLRYYNRELQHVREMGAEFASAYPKIAGRLGMEGFECADPYVERLLEGFAFLAARV  60
            MDPRLL YYNREL  +RE GAEFA+  PKIA+RLGM+G + ADPYVER++E+F+FL+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKLDAQYPVFTQHLLEMVYPHYLSPIPSMAVVQLHPDTAEDLPPAGHAVARHTVLRSLT  120
            QLK+DA++P FTQ+LLE+V P+Y++P PSMAVV+L PDT E+  + G +V+R+T + S  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  GFGERTACEYRTAHEVRLWPLELAEARYFDTpaalaaaglvpppgraaraglrlrfrtla  180
              GE TAC++R++++V LWPL + E R   +P+ ++A     PP     ++LR+ +RT++
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  gaE-AKMLALDTLPVYLAGADELPALLYEQLLANGLGYTVRTASASEGEF-VELHHERAA  238
                + + +   LP YL G + +++ L+E L +++++     ++  +GE+ V+L+H   +
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQH---P  237

Query  239  LRASGFDEEQAMLPYGSRSFSGYRLLQEYFACPERFRFVEFTGLRALLARARGKEFEIVV  298
            +   G++  Q++LP +   F G  LL+E+FACPERF F   TGL A L + +G+  EIV+
Sbjct  238  VAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVI  297

Query  299  WLDR-SVARLHNAIDAGNFRLFCTPAANLFERRADRIHLQGGRTEYHILGDRTRPMDFEV  357
             L+R +  +L +  DA++F LFCTP  NLF R + RI++  + TE H++ DRTRP+D+EV
Sbjct  298  LLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEV  357

Query  358  HSVLEVQGYGDRQEPEQRFLPFYDSNSRNWHGGQAAFYTLRREPRLLSTRQKQNGARSSY  417
             SV EV+G          F P+Y++ + + +G ++ +++LRREPR  S   ++ G+R++Y
Sbjct  358  FSVQEVEGLEAETTRKMIFRPLYHTRNND-EGNHGRYFSLRREPRRSSESARRYGTRTPY  416

Query  418  VGSETFIALVDGKDAPYATSLRQLGLRLLCTNRDLPLHMPVGKSYTDFTLDTDAPVASIR  477
             GSE F++LVD  +APY+ +LR++ +  + TNRDLP  +P      D+T+D+  PVA++ 
Sbjct  417  TGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGR-DDLTVDAAIPVAGVG  475

Query  478  CVAGPTRPRAPVATGETAWRLISHLQLNYLSLLEDEGEQGAASLREMLGLYHDEFDAAAR  537
             +  P  P++P+A  E AWRLI +L +NYL+L + +   G+ +LR++L L+    D++  
Sbjct  476  LIRPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQS  535

Query  538  RQVEGIRQASArpvtrrvpvpGPITYGRGLEITLTCADAAFEGSSAFLLGSVLQHFLARY  597
            RQV ++    + PVTRR+P +G + YGRG+   LT  + +F G S++L+G VL+H++AR 
Sbjct  536  RQVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARH  595

Query  598  VSLNAFTETVLRTQERNEVARWPATPGKR  626
            VS+N+F++  L++ +R +V  WP   G+R
Sbjct  596  VSINTFSQMTLHSMQRGHVMTWPVRTGQR  624

193) XAC4142 in NC_003919


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  384 bits (1442),  Expect = 1e-107, Method: Compositional matrix adjust.
 Identities = 260/627 (42%), Positives = 423/627 (68%), Gaps = 6/627 (0%)

Query  1    MDPRLLPYYTRELQHVRDMGAEFAREYPKIAGRLGLDAFECADPYVERLLEGFAFLAARV  60
            MDPRLL YY REL  +R+ GAEFA   PKIA+RLG+++ + ADPYVER++E+F+FL+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKLDAQYPVFTQHLLEMVYPHYLAPLPSMAVVQLQPDLKDSGLAAGVVVSRQSALRSLV  120
            QLK+DA++P FTQ+LLE+V P+Y++P PSMAVV+L PD ++++LA GV V+R++A+ S +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  GPGERTACEFRTAHPVTLWPLQLAEAKYLESpaalaaagialppgRVVRAGVRLRFELVG  180
              GE TAC+FR+++ VTLWPL + E +   +P+ ++A    LPP   V +++R+ +   G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  GAQTHALA-LDRLPLFLAGADGLPKRLYEQLHADTTAVVVRGSDARGGTLEVTLDADAVQ  239
                  LA   RLP++L G + ++ +L+E LH+ + A +   ++  +G L+V L+ ++V 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQ-HPVA  239

Query  240  MRGFADDDALIPYDGRSFSGYRLLQEYFACPERFLFAELAGLRAPLRRLHGSSFEVVVLL  299
              G+  +++L+P     F G  LL+E+FACPERF F   +GL A L++++G+  E+V+LL
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  300  QRSLPS-LAAAVDAEHFKLFCTPAINLFPRRADRIHLQAGLHEYHVLADRTRPMDFEIHH  358
            +R  P  L    DA +F LFCTP INLFPR + RI++  ++ E H++ DRTRP+D+E+  
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  359  LGEVEGFGDRQEPEQCFTAFYGGDARTWHARHGAFYSMRREPRMLSARQRRDGARSSYVG  418
            + EVEG+         F ++Y       ++ HG ++S+RREPR  S   RR G+R++Y G
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNND-EGNHGRYFSLRREPRRSSESARRYGTRTPYTG  418

Query  419  SEVFVSLVDADDQAHSTRLRQLGLQLWCSNRDLPLHMPVGKGASDFTMDSGVPVRSVRCV  478
            SEVF+SLVD ++ + +  LR++ +    +NRDLP  +P  +G  D+T+D+++PV +V  +
Sbjct  419  SEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIP-RNGRDDLTVDAAIPVAGVGLI  477

Query  479  AGPTKPRPALSDGQTAWRllsqlqlnylslFE-DGPDGAAALREILALYCDPFDASAQRQ  537
              P  P+P+L++ + AWRL+ QL +NYL+L + D   G+ ALR++L L+  + D++  RQ
Sbjct  478  RPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQ  537

Query  538  IEGVKQVSGTpivrripvpgpiTFGRGLEITLTCEDAAFEGTGAFLLASVLRHFFARYVS  597
            + ++     TP+ RR+P +G + +GRG+   LT ++ +F G +++L++ VL H++AR VS
Sbjct  538  VRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVS  597

Query  598  VNSFTETVLRTTERNEVARWPAQPGTR  624
            +N+F++  L++ +R +V  WP + G R
Sbjct  598  INTFSQMTLHSMQRGHVMTWPVRTGQR  624

194) XAC29_20845 in NC_020800


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  384 bits (1442),  Expect = 1e-107, Method: Compositional matrix adjust.
 Identities = 260/627 (42%), Positives = 423/627 (68%), Gaps = 6/627 (0%)

Query  1    MDPRLLPYYTRELQHVRDMGAEFAREYPKIAGRLGLDAFECADPYVERLLEGFAFLAARV  60
            MDPRLL YY REL  +R+ GAEFA   PKIA+RLG+++ + ADPYVER++E+F+FL+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKLDAQYPVFTQHLLEMVYPHYLAPLPSMAVVQLQPDLKDSGLAAGVVVSRQSALRSLV  120
            QLK+DA++P FTQ+LLE+V P+Y++P PSMAVV+L PD ++++LA GV V+R++A+ S +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  GPGERTACEFRTAHPVTLWPLQLAEAKYLESpaalaaagialppgRVVRAGVRLRFELVG  180
              GE TAC+FR+++ VTLWPL + E +   +P+ ++A    LPP   V +++R+ +   G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  GAQTHALA-LDRLPLFLAGADGLPKRLYEQLHADTTAVVVRGSDARGGTLEVTLDADAVQ  239
                  LA   RLP++L G + ++ +L+E LH+ + A +   ++  +G L+V L+ ++V 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQ-HPVA  239

Query  240  MRGFADDDALIPYDGRSFSGYRLLQEYFACPERFLFAELAGLRAPLRRLHGSSFEVVVLL  299
              G+  +++L+P     F G  LL+E+FACPERF F   +GL A L++++G+  E+V+LL
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  300  QRSLPS-LAAAVDAEHFKLFCTPAINLFPRRADRIHLQAGLHEYHVLADRTRPMDFEIHH  358
            +R  P  L    DA +F LFCTP INLFPR + RI++  ++ E H++ DRTRP+D+E+  
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  359  LGEVEGFGDRQEPEQCFTAFYGGDARTWHARHGAFYSMRREPRMLSARQRRDGARSSYVG  418
            + EVEG+         F ++Y       ++ HG ++S+RREPR  S   RR G+R++Y G
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNND-EGNHGRYFSLRREPRRSSESARRYGTRTPYTG  418

Query  419  SEVFVSLVDADDQAHSTRLRQLGLQLWCSNRDLPLHMPVGKGASDFTMDSGVPVRSVRCV  478
            SEVF+SLVD ++ + +  LR++ +    +NRDLP  +P  +G  D+T+D+++PV +V  +
Sbjct  419  SEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIP-RNGRDDLTVDAAIPVAGVGLI  477

Query  479  AGPTKPRPALSDGQTAWRllsqlqlnylslFE-DGPDGAAALREILALYCDPFDASAQRQ  537
              P  P+P+L++ + AWRL+ QL +NYL+L + D   G+ ALR++L L+  + D++  RQ
Sbjct  478  RPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQ  537

Query  538  IEGVKQVSGTpivrripvpgpiTFGRGLEITLTCEDAAFEGTGAFLLASVLRHFFARYVS  597
            + ++     TP+ RR+P +G + +GRG+   LT ++ +F G +++L++ VL H++AR VS
Sbjct  538  VRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVS  597

Query  598  VNSFTETVLRTTERNEVARWPAQPGTR  624
            +N+F++  L++ +R +V  WP + G R
Sbjct  598  INTFSQMTLHSMQRGHVMTWPVRTGQR  624

195) XCAW_00157 in NC_020815


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  384 bits (1442),  Expect = 1e-107, Method: Compositional matrix adjust.
 Identities = 260/627 (42%), Positives = 423/627 (68%), Gaps = 6/627 (0%)

Query  1    MDPRLLPYYTRELQHVRDMGAEFAREYPKIAGRLGLDAFECADPYVERLLEGFAFLAARV  60
            MDPRLL YY REL  +R+ GAEFA   PKIA+RLG+++ + ADPYVER++E+F+FL+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKLDAQYPVFTQHLLEMVYPHYLAPLPSMAVVQLQPDLKDSGLAAGVVVSRQSALRSLV  120
            QLK+DA++P FTQ+LLE+V P+Y++P PSMAVV+L PD ++++LA GV V+R++A+ S +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  GPGERTACEFRTAHPVTLWPLQLAEAKYLESpaalaaagialppgRVVRAGVRLRFELVG  180
              GE TAC+FR+++ VTLWPL + E +   +P+ ++A    LPP   V +++R+ +   G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  GAQTHALA-LDRLPLFLAGADGLPKRLYEQLHADTTAVVVRGSDARGGTLEVTLDADAVQ  239
                  LA   RLP++L G + ++ +L+E LH+ + A +   ++  +G L+V L+ ++V 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQ-HPVA  239

Query  240  MRGFADDDALIPYDGRSFSGYRLLQEYFACPERFLFAELAGLRAPLRRLHGSSFEVVVLL  299
              G+  +++L+P     F G  LL+E+FACPERF F   +GL A L++++G+  E+V+LL
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  300  QRSLPS-LAAAVDAEHFKLFCTPAINLFPRRADRIHLQAGLHEYHVLADRTRPMDFEIHH  358
            +R  P  L    DA +F LFCTP INLFPR + RI++  ++ E H++ DRTRP+D+E+  
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  359  LGEVEGFGDRQEPEQCFTAFYGGDARTWHARHGAFYSMRREPRMLSARQRRDGARSSYVG  418
            + EVEG+         F ++Y       ++ HG ++S+RREPR  S   RR G+R++Y G
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNND-EGNHGRYFSLRREPRRSSESARRYGTRTPYTG  418

Query  419  SEVFVSLVDADDQAHSTRLRQLGLQLWCSNRDLPLHMPVGKGASDFTMDSGVPVRSVRCV  478
            SEVF+SLVD ++ + +  LR++ +    +NRDLP  +P  +G  D+T+D+++PV +V  +
Sbjct  419  SEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIP-RNGRDDLTVDAAIPVAGVGLI  477

Query  479  AGPTKPRPALSDGQTAWRllsqlqlnylslFE-DGPDGAAALREILALYCDPFDASAQRQ  537
              P  P+P+L++ + AWRL+ QL +NYL+L + D   G+ ALR++L L+  + D++  RQ
Sbjct  478  RPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQ  537

Query  538  IEGVKQVSGTpivrripvpgpiTFGRGLEITLTCEDAAFEGTGAFLLASVLRHFFARYVS  597
            + ++     TP+ RR+P +G + +GRG+   LT ++ +F G +++L++ VL H++AR VS
Sbjct  538  VRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVS  597

Query  598  VNSFTETVLRTTERNEVARWPAQPGTR  624
            +N+F++  L++ +R +V  WP + G R
Sbjct  598  INTFSQMTLHSMQRGHVMTWPVRTGQR  624

196) Bxe_B2596 in NC_007952


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  384 bits (1442),  Expect = 1e-107, Method: Compositional matrix adjust.
 Identities = 262/642 (41%), Positives = 416/642 (65%), Gaps = 23/642 (3%)

Query  4    MDPELPAYYQGELHYIHELFQEFAQQHPKIARRLGAQAGEAGDPYVERLLQSFAITAARS  63
            MDP L  YY+ EL Y++E   EFA  HPKIA RLG Q+ + +DPYVER++++F++ +AR+
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  64   QMRID----RFSLDIPLRKLDGVDLNLTAPLPSLGVARFYPDAEAPHSPQGLTLARGTRL  119
            Q++ID    RF+     R L+ V+ N  +P PS++V ++YPD++  + ++G+T++R+T +
Sbjct  61   QLKIDAEFPRFTQ----RLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAF  116

Query  120  TVHAAE-DATECAFLTSQPLRLWPVAITRAKPTGIPADVPALYRYVHDGQDASRVRGALR  178
                +E + T C F +SQ + LWP++I   + T+ P+D+PAL RY+       +V GALR
Sbjct  117  VSPIPEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYL---PPNIHVAGALR  173

Query  179  LSLATVNGMAFRGLEALDELPVYLCGEEKMASQLFELIHTSVVGIVMGVPGEFEKGGLYG  238
            ++L T   +AF  L +   LP YLCGEE++AS+LFEL+HTS V+ + G PG+F+ G L  
Sbjct  174  ITLRTFGELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFD-GEL-N  231

Query  239  AKLPGMPYMQVKHAGLEPHESLLRPVAAKFHGHRLVHEFFALPSRFGFFTITGLAAGLKH  298
             +L       V H GLEP ++LL      FHGH L+HEFFA P RF FFT TGL+AGL+ 
Sbjct  232  VNLQH----PVAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQK  287

Query  299  IGGPEVEIVLLLAREAAT-LDQQIGVRDFALYCTPIVNLYPATSERLTMHPEKHEHPLTP  357
            + G   EIV+LL R ++  L +Q +  +F+L+CTP++NL+P T+ R+ +     E+ L  
Sbjct  288  VQGNVAEIVILLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVV  347

Query  358  VAERPGDYEVHSVDRVRGQLEEESEKFLFQPLDAALPDDTRRNSRYFTLRREQQLVADNE  417
               RP DYEV SV+ V G   E + K +F+PL  +  +D   ++RYF+LRRE +  +++ 
Sbjct  348  DRTRPLDYEVFSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESA  407

Query  418  RRYDTHREFVRTLTSITLLDENRKPDETGMRFLTFDAWLTNGDLPCVQPRNGVNDLTMAD  477
            RRY+T+  +  +   ++L+D++  P    +R +T  A +TN DLPC+ PRNG +DLT+  
Sbjct  408  RRYGTRTPYTGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTVDA  467

Query  478  AKAVESVGFVRGPTAPRPPLALGARGDAAWELVRQFHLELAVFDDEFDEPNPGEGLRLML  537
            A +V +VG++R P +P+P  +L+ R + AW L+RQ+ ++   + D +D+   G++LR +L
Sbjct  468  AIPVAGVGLIRPPRPPQP--PLAER-EMAWRLIRQLSFNYLPLAD-LDHRTGGQALRDLL  523

Query  538  RPYLAAGDPAMARVLDSLVGATAGAVNDMHCWGGELHLARGIAVTLTFDESRLDGWSPFA  597
              +++A D++ +R + SL+G  + +V      +G L  +RG++  LT DE  + G SP+ 
Sbjct  524  NLFIPAHDSPQSRQVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYL  583

Query  598  FALVLERYVARHVSAHCFTRTTVRTTQRGEIFTFPTRGGTRG  639
            F+LVLE+Y+ARHVS + F++ T+++ QRG++ T P R G RG
Sbjct  584  FGLVLEHYIARHVSINTFSQMTLHSMQRGHVMTWPVRTGQRG  625

197) XACM_4010 in NC_016010


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  381 bits (1433),  Expect = 8e-107, Method: Compositional matrix adjust.
 Identities = 262/627 (42%), Positives = 420/627 (67%), Gaps = 6/627 (0%)

Query  1    MDPRLLPYYTRELQHVRDMGAEFAREYPKIAGRLGLDAFECADPYVERLLEGFAFLAARV  60
            MDPRLL YY REL  +R+ GAEFA   PKIA+RLG+++ + ADPYVER++E+F+FL+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKLDAQYPVFTQHLLEMVYPHYLAPLPSMAVVQLQPDLKDSGLAAGVVVPRQSALRSLV  120
            QLK+DA++P FTQ+LLE+V P+Y++P PSMAVV+L PD ++++LA GV VPR++A+ S +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  GPGERTACEFRTAHAVSLWPLQLAEVKYLESpaalaaagialpagrvvragvrLRFELVG  180
              GE TAC+FR+++ V+LWPL + EV+   +P+ ++A    LP+   V +++R+ +   G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  181  GAQTQALA-LDRLPLFLAGADGLPKRLYEQLHADTTAVVVRGSNASGGMLEMTLGADTVQ  239
                  LA   RLP++L G + ++ +L+E LH+ + A +   +   +G L++ L  + V 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNL-QHPVA  239

Query  240  MRGFADDDALIPYDGRSFSGYRLLQEYFACPERFLFAELTGLRAPLRRLHGSSFEVVVLL  299
              G+  +++L+P     F G  LL+E+FACPERF F   TGL A L++++G+  E+V+LL
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  300  QRSLPS-LAAAVGAEHFKLFCTPAINLFPRRADRIHLHAGLHEYHVLADRTRPMDFEVHH  358
            +R  P  L    +A +F LFCTP INLFPR + RI++  ++ E H++ DRTRP+D+EV  
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  359  LGEVEGFGDRQEPEQRFAPFYGGDARTWHARHGAFYSMRREPRMLSARQRRDGARSSYVG  418
            + EVEG+         F P+Y       ++ HG ++S+RREPR  S   RR G+R++Y G
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNND-EGNHGRYFSLRREPRRSSESARRYGTRTPYTG  418

Query  419  SEVFVSLVDADDQPHSTRLRQLGLQLWCSNRDLPLHMPVGKGTTDFTMDSGVPVQSVRCV  478
            SEVF+SLVD ++ P +  LR++ +    +NRDLP  +P  +G  D+T+D+++PV +V  +
Sbjct  419  SEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIP-RNGRDDLTVDAAIPVAGVGLI  477

Query  479  AGPTKPRPALSAGQTAWRllsqlqlnylslFE-DGPDGAAALREILTLYCDPFDASAQRQ  537
              P  P+P+L+  + AWRL+ QL +NYL+L + D   G+ ALR++L L+  + D++  RQ
Sbjct  478  RPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQ  537

Query  538  IEGVKQVSGTpivrripvpgpiTFGRGLEITLTCEDAAFEGTGAFLLASVLRHFFARYVS  597
            + ++     TP+ RR+P +G + +GRG+   LT ++ +F G +++L++ VL H++AR VS
Sbjct  538  VRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVS  597

Query  598  VNSFTETVLRTTERNEVARWPAQPGTR  624
            +N+F++  L++ +R +V  WP + G R
Sbjct  598  INTFSQMTLHSMQRGHVMTWPVRTGQR  624

198) XCV4238 in NC_007508


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  380 bits (1427),  Expect = 2e-106, Method: Compositional matrix adjust.
 Identities = 260/627 (42%), Positives = 420/627 (67%), Gaps = 6/627 (0%)

Query  10   MDPRLLPYYTRELQHVRDMGAEFAREYPKIAGRLGLDAFECADPYVERLLEGFAFLAARV  69
            MDPRLL YY REL  +R+ GAEFA   PKIA+RLG+++ + ADPYVER++E+F+FL+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  70   QLKLDAQYPVFTQHLLEMVYPHYLAPLPSMAVVQLQPDLKDSGLAAGVVVPRQSALRSLV  129
            QLK+DA++P FTQ+LLE+V P+Y++P PSMAVV+L PD ++++LA GV VPR++A+ S +
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  130  GPGERTACEFRTAHAVSLWPLQLAEVKYLESpaalaaagialpagrvvragvrLRFELVG  189
              GE TAC+FR+++ V+LWPL + EV+   +P+ ++A    LP+   V +++R+ +   G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  190  GAQTQALA-LDRLPLFLAGADGLPKRLYEQLHADTTAVVVRGSNASGGMLEMTLGADTVQ  248
                  LA   RLP++L G + ++ +L+E LH+ + A +   +   +G L++ L  + V 
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNL-QHPVA  239

Query  249  MRGFAGDDALIPYDGRSFSGYRLLQEYFACPERFLFAELTGLRASLRRLHGSSFEVVVLL  308
              G+  +++L+P     F G  LL+E+FACPERF F   TGL A+L++++G+  E+V+LL
Sbjct  240  HEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILL  299

Query  309  QRSLPS-LAAAVGAEHFKLFCTPAINLFPRRADRIHLHAGLHEYHVLADRTRPMDFEIHH  367
            +R  P  L    +A +F LFCTP INLFPR + RI++  ++ E H++ DRTRP+D+E+  
Sbjct  300  NRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFS  359

Query  368  LGEVEGFGDRQEPEQRFAPFYGGDARTWHARHGAFYSMRREPRMLSARQRRDGARSSYVG  427
            + EVEG+         F P+Y       ++ HG ++S+RREPR  S   RR G+R++Y G
Sbjct  360  VQEVEGLEAETTRKMIFRPLYHTRNND-EGNHGRYFSLRREPRRSSESARRYGTRTPYTG  418

Query  428  SEVFVSLVDADDQPHRTRLRQLGLQLWCSNRDLPLHMPVGKGTTDFTMDSGVPVQSVRCV  487
            SEVF+SLVD ++ P    LR++ +    +NRDLP  +P  +G  D+T+D+++PV +V  +
Sbjct  419  SEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIP-RNGRDDLTVDAAIPVAGVGLI  477

Query  488  AGPTKPRPALSDGQTAWRllsqlqlnylslFE-DGPDGAAALREILTLYCDPFDASAQRQ  546
              P  P+P+L++ + AWRL+ QL +NYL+L + D   G+ ALR++L L+  + D++  RQ
Sbjct  478  RPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQ  537

Query  547  IEGVKQVSGTpivrripvpgpiTFGRGLEITLTCEDAAFEGTGAFLLASVLRHFFARYVS  606
            + ++     TP+ RR+P +G + +GRG+   LT ++ +F G +++L++ VL H++AR VS
Sbjct  538  VRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVS  597

Query  607  VNSFTETVLRTTERNEVARWLAQPGTR  633
            +N+F++  L++ +R +V  W  + G R
Sbjct  598  INTFSQMTLHSMQRGHVMTWPVRTGQR  624

199) Lcho_4086 in NC_010524


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  375 bits (1411),  Expect = 4e-105, Method: Compositional matrix adjust.
 Identities = 258/642 (41%), Positives = 423/642 (66%), Gaps = 23/642 (3%)

Query  5    LDPGLLRHYNEELAYLREMGLEFSRQFPKIAARLGMDGLEVADPYVERLLEGFAFMSARV  64
            +DP LL  YN EL+YLRE G EF+   PKIAARLGM+G ++ADPYVER++E+F+F+SAR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  65   QLKLDAEYPRFIGHLLESVYPNALAPVPSMAVMRLQPDLADPALARGAPVPRGSALHADQ  124
            QLK+DAE+PRF  +LLE V PN ++P PSMAV++L PD  +  LA+G  VPR++A+ +  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  125  LRSQNTRCEFRTAHALRLWPIEIASVQYFSHAGELPVAR--LPELRQAAGGLRIRLRAHG  182
              ++NT C+FR+++ + LWP+ I  V+  + + ++P  +  LP   + AG+LRI LR+ G
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFG  180

Query  183  GLRFDQLP-IDSLVFYLAAPDEVAYRLHALIFGAGLGSWLAAPAA-NAPVPGSAARPVDP  240
             L F +L+    L FYL + + +A +L  L+  +++++  + P+  ++ +  +  +PV  
Sbjct  181  ELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPV--  238

Query  241  GPAGAGWRGADSLQPLGHSDDEALLPVTARGFSGHRLVQELAALPQRFLFvevaelrarl  300
                    + ++L+P     +++LLP++   F GH L++E+ A P+RF F   + L A L
Sbjct  239  --------AHEGLEP-----GQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGL  285

Query  301  arlavtevDLFLPFSRGEPG-LEALVDASSLALNCTPAINLFGKRLDRIQTSVSNWEYHV  359
             ++     ++ + ++R  P+ L    DA+ ++L CTP INLF +   RI+ + S  E H+
Sbjct  286  QKVQGNVAEIVILLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHL  345

Query  360  VPDRTRPLDYELHSLASVVGHGTGRVAEQAFAPLYTACHDEGPEQLAYYSLRREVRLPST  419
            V DRTRPLDYE+ S+  V G  +       F PLY + +++  ++  Y+SLRRE R +S 
Sbjct  346  VVDRTRPLDYEVFSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSE  405

Query  420  RQQEQGARSSYLGSEVFVSLVDPHNLPYAEDVRQLSLTGLVSNRDLPMLLSGSGW---TL  476
              +  G+R++Y GSEVF+SLVD H+ PY+E++R++++T++V+NRDLP L++ +G+   T+
Sbjct  406  SARRYGTRTPYTGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLPCLIPRNGRDDLTV  465

Query  477  DLPGPVRGATCLRGPTAPHARLPRGDIGWQLISQLTLNHLSIAGEDPQRAAASLRSLLIH  536
            D + PV G   +R P +P++ L+  +++W+LI QL++N L++A+ D + ++ +LR LL  
Sbjct  466  DAAIPVAGVGLIRPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNL  525

Query  537  HGSADDAGWRKQVEGLRAVSAQPVTRRLPMPGPLAYGLGVAIDVTVDELAFQGGSAFLMG  596
              +A+D+   +QV +L +  + PVTRRLP +G L YG GV+ ++TVDE +F G S++L G
Sbjct  526  FIPAHDSPQSRQVRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFG  585

Query  597  CVLERFLARQASINSFTQLRLIAPGRGTLMTWPPRVGSAAVI  638
             VLE+++AR+ SIN+F+Q+ L +  RG +MTWP R G  + +
Sbjct  586  LVLEHYIARHVSINTFSQMTLHSMQRGHVMTWPVRTGQRGSV  627

200) sciC in NC_016626


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  352 bits (1321),  Expect = 5e-98, Method: Compositional matrix adjust.
 Identities = 255/628 (41%), Positives = 403/628 (65%), Gaps = 6/628 (0%)

Query  1    MDPRLLRHYNTELAHLREMGAEFAQQFPKIAARLGMKGIDVADPYVERLLEGTAFLAARV  60
            MDPRLL  YN EL+ LRE GAEFA   PKIAARLGM+G D+ADPYVER++E+ +FL+AR 
Sbjct  1    MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSART  60

Query  61   QLKLEEEFPRFTQQLAHVVLPQAGCPTPAMLIARLAPDLANPNLADGFTVPRHTALLSTR  120
            QLK++ EFPRFTQ+L +VV P+   PTP+M + +L PD  + +LA G TVPR+TA++S  
Sbjct  61   QLKIDAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPI  120

Query  121  APADTTPCEFRTAAALTLWPVELTDARYlaqlpdlplaalpatrplaHRVKGAVRIRLAT  180
            + ++ T+C+FR++  +TLWP+ + + R  A  PD+P         +  +V GA+RI L T
Sbjct  121  PEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNI--HVAGALRITLRT  178

Query  181  PEGLSFDALRLDA-LSLYFAGGDDTAYRLAERVLGGTLAIVVSTPERPSRALAVLPGDAV  239
               L+F  L   A L++Y+ G +  A +L E +  +++A + + P +    L V   ++V
Sbjct  179  FGELAFSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGELNVNLQHPV  238

Query  240  SLPGFDADEALLPVTPNAFQGYRVLHEYFALPERFRFARIEGIASVLRAFPVREIELTFL  299
            +  G++++++LLP++ N F+G  +LHE+FA PERF F    G+++ L+       E+ +L
Sbjct  239  AHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVIL  298

Query  300  LAAGDPP-LERIVTKDHVLLHCVPAVNLFPKQANPALVTDAAARFHVIPDRTHPLDYEVH  358
            L    P  L +     +  L C P +NLFP+ +    VT++ +  H++ DRT+PLDYEV 
Sbjct  299  LNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVF  358

Query  359  SVTGVTGYGASDDSEQAFHPFYADYLADRPGEAAYFTVEREPRLVPAARKKSGARTDYVG  418
            SV  V G  A       F+P+Y     D   ++ YF++ REPR  + + ++ G+RT Y G
Sbjct  359  SVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTG  418

Query  419  SEMYVSIVDPRAAPYRGALRQLSFATLCSNRDLPLMLTPGGAGSDFSLDIAAPVAAVHCV  478
            SE+++S+VD + APY   LR+++ +++ +NRDLP  L P  +  D+++D A PVA+V  +
Sbjct  419  SEVFLSLVDQHEAPYPENLRHITVTAMVTNRDLP-CLIPRNGRDDLTVDAAIPVAGVGLI  477

Query  479  SGPSRPAPATLDGAQTWRLIDQLSLHYLSLCN-GPREaaaalrallmlhvaPHDGAGRGQ  537
              P  P P+  +   +WRLI QLS++YL+L + + R ++ ALR LL L +++HD++   Q
Sbjct  478  RPPRPPQPPLAEREMAWRLIRQLSFNYLPLADLDHRTGGQALRDLLNLFIPAHDSPQSRQ  537

Query  538  VAGVVSVDAKPVVRRLPMPGPIAFGRGLSIDVLVDELAFQGGSAWLFGCVLDRFFARYVS  597
            V ++++  + PV RRLP +G + +GRG+S ++ VDE +F G S+ LFG VL++++AR VS
Sbjct  538  VRSLIGCKTTPVTRRLPGSGLLVYGRGVSCELTVDEEGFSGISPYLFGLVLEHYIARHVS  597

Query  598  INSFVQTTLRTDARGEILRSRTRCGTRA  625
            IN+F Q TL++  RG+++    R G R+
Sbjct  598  INTFSQMTLHSMQRGHVMTWPVRTGQRG  625

201) BRPE64_BCDS11980 in NC_021294


> NC_003198_P1|5|G4|16759254|NP_454871.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|-|2454..4337|STY0289|-|hypothetical 
protein
Length=627

 Score =  345 bits (1295),  Expect = 5e-96, Method: Compositional matrix adjust.
 Identities = 210/483 (44%), Positives = 329/483 (69%), Gaps = 21/483 (4%)

Query  5    YLDELRFMQALGGEFARAHPKIARRLGMLGEDAGTEVGDPYVRRLFESSAFINARTQLRF  64
            Y  EL +++  G+EFA  HPKIA RLGM     GT+++DPYV R++E+ +F++ARTQL++
Sbjct  9    YNRELSYLRETGAEFATLHPKIAARLGM----QGTDIADPYVERMIEAFSFLSARTQLKI  64

Query  65   EDEFPLLTQALLSSVYPNYLSPTPSISIARFYPGGKAGGFTTGYTLARGVELNSLNLPSG  124
            + EFP +TQ LL  V PNY++PTPS+++ ++YP+ + G+++ G T++R+  + S  +P G
Sbjct  65   DAEFPRFTQRLLEVVNPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVS-PIPEG  123

Query  125  EKTACTFRTTQDVSFYPVSIQDGRLTHVPPDLLGQSRYVPPDRQVCGALRLRLRTMEGVP  184
            E+TAC FR++QDV++ P+SI++ RLT  PPD+ +  RY+PP+ +V GALR+ LRT   ++
Sbjct  124  ENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHRYLPPNIHVAGALRITLRTFGELA  183

Query  185  FSALRGLDRLQVYLAGDERVASHLHELIHAGAVVSVIGEPGRFSDAGYTPHVVRSDAVVQ  244
            FS L G  RL  YL G+ER+ASHL EL+H++AV ++ GEPG+F +     +V   ++V +
Sbjct  184  FSELAGPARLPFYLCGEERIASHLFELLHTSAVATLAGEPGHFDGE---LNVNLQHPVAH  240

Query  245  DGLGPEETVLPLVAHKFLGHNLVQEYFACPNRFYFFTLTGLEAGLARIAGNEVEIIVLLD  304
            +GL P + +LPL  + F GHNL++E+FACP+RFYFFT TGL AGL ++ GN  EI++LL+
Sbjct  241  EGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFFTPTGLSAGLQKVQGNVAEIVILLN  300

Query  305  RSTSE-LAQHVDASMFALFCVPVVNLFKVRTAPAKLKEESGQVRLVPVENRPLDYEVHSV  363
            R  ++ L ++ DA+ F+LFC PV+NLF   T+   + +   + +LV    RPLDYEV SV
Sbjct  301  RLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRIEVTHSVTEQHLVVDRTRPLDYEVFSV  360

Query  364  ELAIGQVDNDDDSEELRFYPLHEARLRDEDELGRYFTVRREQRLSAAKGRSQDTRAPYIG  423
            +   G   + + +  + F PL ++R  DE++ GRYF++RRE R S+  +R  +TR+PY G
Sbjct  361  QEVEGL--EAETTRKMIFRPLYHTRNNDEGNHGRYFSLRREPRRSSESARRYGTRTPYTG  418

Query  424  TDSFLSLVGRDGLPYVPDESSESDEDRRINYLSLDAWLTNRDLAGRLECNGVSDLGLPES  483
            ++ FLSLV+++  PY       +++ R+I   ++   +TNRDL+  +  NG  DL +  +
Sbjct  419  SEVFLSLVDQHEAPY-------PENLRHITVTAM---VTNRDLPCLIPRNGRDDLTVDAA  468

Query  484  TTA  486
               
Sbjct  469  IPV  471