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Homologs of tnpB gene of AY330636

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) HPELS_00920
( YP_005424337.1 )

IS606 transposase

NC_017063
(Helicobacter pylori ELS37)

0.0

2) HPELS_00940
( YP_005424341.1 )

IS606 transposase

NC_017063
(Helicobacter pylori ELS37)

0.0

3) HPELS_05260
( YP_005425158.1 )

IS606 transposase

NC_017063
(Helicobacter pylori ELS37)

0.0

4) HPELS_07270
( YP_005425545.1 )

IS606 transposase

NC_017063
(Helicobacter pylori ELS37)

0.0

5) join
( YP_005425737.1 )

IS606 transposase

NC_017064
(Helicobacter pylori ELS37)

0.0

6) HPELS_08105
( YP_005425702.1 )

IS606 transposase

NC_017063
(Helicobacter pylori ELS37)

5e-179

7) tnpB
( NP_223544.1 )

IS606 transposase

NC_000921
(Helicobacter pylori J99)

8e-179

8) HPSA_02765
( YP_005771167.1 )

IS606 transposase

NC_017361
(Helicobacter pylori SouthAfrica7)

1e-176

9) HPSA_07580
( YP_005772070.1 )

IS606 transposase

NC_017361
(Helicobacter pylori SouthAfrica7)

1e-176

10) HPSA_08259
( YP_005782948.1 )

IS606 transposase

NC_017373
(Helicobacter pylori SouthAfrica7)

1e-176

11) HPSA_08289
( YP_005782954.1 )

IS606 transposase

NC_017373
(Helicobacter pylori SouthAfrica7)

1e-176

12) HPSA_08344
( YP_005782965.1 )

IS606 transposase

NC_017373
(Helicobacter pylori SouthAfrica7)

1e-176

13) HCD_01195
( YP_006220481.1 )

IS606 transposase

NC_017735
(Helicobacter cetorum MIT 99-5656)

4e-161

14) HCD_05110
( YP_006221234.1 )

IS606 transposase

NC_017735
(Helicobacter cetorum MIT 99-5656)

4e-161

15) HCD_07850
( YP_006221767.1 )

IS606 transposase

NC_017735
(Helicobacter cetorum MIT 99-5656)

4e-161

16) HCD_08095
( YP_006221813.1 )

IS606 transposase

NC_017735
(Helicobacter cetorum MIT 99-5656)

4e-161

17) HCD_08330
( YP_006221858.1 )

IS606 transposase

NC_017735
(Helicobacter cetorum MIT 99-5656)

4e-161

18) HPAKL117_04690
( YP_007017472.1 )

IS606 transposase

NC_019560
(Helicobacter pylori Aklavik117)

3e-159

19) HPPC_04955
( YP_003927257.1 )

IS606 transposase

NC_014555
(Helicobacter pylori PeCan4)

4e-159

20) HCD_01015
( YP_006220445.1 )

IS606 transposase

NC_017735
(Helicobacter cetorum MIT 99-5656)

1e-155

21) HCD_01955
( YP_006220625.1 )

IS606 transposase

NC_017735
(Helicobacter cetorum MIT 99-5656)

1e-155

22) HCD_02215
( YP_006220677.1 )

IS606 transposase

NC_017735
(Helicobacter cetorum MIT 99-5656)

1e-155

23) HCD_02410
( YP_006220712.1 )

IS606 transposase

NC_017735
(Helicobacter cetorum MIT 99-5656)

1e-155

24) HCD_02820
( YP_006220792.1 )

IS606 transposase

NC_017735
(Helicobacter cetorum MIT 99-5656)

1e-155

25) HCD_02975
( YP_006220821.1 )

IS606 transposase

NC_017735
(Helicobacter cetorum MIT 99-5656)

1e-155

26) HCD_05155
( YP_006221243.1 )

IS606 transposase

NC_017735
(Helicobacter cetorum MIT 99-5656)

1e-155

27) HCD_05185
( YP_006221249.1 )

IS606 transposase

NC_017735
(Helicobacter cetorum MIT 99-5656)

1e-155

28) HCD_06180
( YP_006221448.1 )

IS606 transposase

NC_017735
(Helicobacter cetorum MIT 99-5656)

1e-155

29) HCD_07460
( YP_006221693.1 )

IS606 transposase

NC_017735
(Helicobacter cetorum MIT 99-5656)

1e-155

30) HCD_07770
( YP_006221751.1 )

IS606 transposase

NC_017735
(Helicobacter cetorum MIT 99-5656)

1e-155

31) HCD_07790
( YP_006221755.1 )

IS606 transposase

NC_017735
(Helicobacter cetorum MIT 99-5656)

1e-155

32) HCD_07940
( YP_006221782.1 )

IS606 transposase

NC_017735
(Helicobacter cetorum MIT 99-5656)

1e-155

33) HCD_08729
( YP_006221919.1 )

IS606 transposase

NC_017736
(Helicobacter cetorum MIT 99-5656)

1e-155

34) HCD_08764
( YP_006221925.1 )

IS606 transposase

NC_017736
(Helicobacter cetorum MIT 99-5656)

1e-155

35) tnpB2a
( YP_005784500.1 )

IS606 Transposase

NC_017374
(Helicobacter pylori 2017)

4e-137

36) tnpB1
( YP_005792345.1 )

IS606 transposase

NC_017381
(Helicobacter pylori 2018)

1e-127

37) hp908_1540
( YP_005766034.1 )

IS606 transposase

NC_017357
(Helicobacter pylori 908)

1e-125

• Sequence Alignments

1) HPELS_00920 in NC_017063


> AY330636|5|G5|37811782|AAR03857.1|Helicobacter_pylori_Ca52|+|3179..4507|tnpB|-|transposase 
B-like protein
Length=442

 Score =  653 bits (2469),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 427/442 (97%), Positives = 432/442 (98%), Gaps = 0/442 (0%)

Query  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKRSS  60
            MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWK+SS
Sbjct  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKKSS  60

Query  61   ELDKAIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVKNRGFPKFKNSKSAKQSFLWN  120
            ELD AIKHHLNARGLSFSSVIAQQ+RMNVERALKDAFKVKNRGFPKFKNSK AKQSFLWN
Sbjct  61   ELDHAIKHHLNARGLSFSSVIAQQARMNVERALKDAFKVKNRGFPKFKNSKFAKQSFLWN  120

Query  121  NQGFSIKESDEERFKTFTLMKMPLLMRMHRDFPPNFKVKQISISCSHRKYFVSFSVEYEQ  180
            NQGFSIKESDEERFK FTLMKMPL+MRMHR+FPPN KVKQI ISCSHRKYFVSFSVEYEQ
Sbjct  121  NQGFSIKESDEERFKIFTLMKMPLMMRMHRNFPPNSKVKQIVISCSHRKYFVSFSVEYEQ  180

Query  181  DITPIKNPKDCVGLDLNILDIACSCGINNHEKLTDFKQYQTDMKELLGIEIDKELDTKRL  240
            DITPIKNPKDCVGLDLN LDIACSC INNHEKLTDFKQYQTDMKELLGIEID ELDTKRL
Sbjct  181  DITPIKNPKDCVGLDLNTLDIACSCEINNHEKLTDFKQYQTDMKELLGIEIDEELDTKRL  240

Query  241  IPTysklyslkkyskkfkrlqrkQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300
            IPTYSKLYSLKKYS KFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK
Sbjct  241  IPTYSKLYSLKKYSEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300

Query  301  TDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSINNTSFYQIISFLD  360
            TDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSI N+SFYQIISFLD
Sbjct  301  TDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNASFYQIISFLD  360

Query  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420
            YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS
Sbjct  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420

Query  421  KGLSLFGVGNIHADFKEQSLSC  442
            KGLSLFGVGNIHADFKEQSLSC
Sbjct  421  KGLSLFGVGNIHADFKEQSLSC  442

2) HPELS_00940 in NC_017063


> AY330636|5|G5|37811782|AAR03857.1|Helicobacter_pylori_Ca52|+|3179..4507|tnpB|-|transposase 
B-like protein
Length=442

 Score =  653 bits (2469),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 427/442 (97%), Positives = 432/442 (98%), Gaps = 0/442 (0%)

Query  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKRSS  60
            MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWK+SS
Sbjct  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKKSS  60

Query  61   ELDKAIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVKNRGFPKFKNSKSAKQSFLWN  120
            ELD AIKHHLNARGLSFSSVIAQQ+RMNVERALKDAFKVKNRGFPKFKNSK AKQSFLWN
Sbjct  61   ELDHAIKHHLNARGLSFSSVIAQQARMNVERALKDAFKVKNRGFPKFKNSKFAKQSFLWN  120

Query  121  NQGFSIKESDEERFKTFTLMKMPLLMRMHRDFPPNFKVKQISISCSHRKYFVSFSVEYEQ  180
            NQGFSIKESDEERFK FTLMKMPL+MRMHR+FPPN KVKQI ISCSHRKYFVSFSVEYEQ
Sbjct  121  NQGFSIKESDEERFKIFTLMKMPLMMRMHRNFPPNSKVKQIVISCSHRKYFVSFSVEYEQ  180

Query  181  DITPIKNPKDCVGLDLNILDIACSCGINNHEKLTDFKQYQTDMKELLGIEIDKELDTKRL  240
            DITPIKNPKDCVGLDLN LDIACSC INNHEKLTDFKQYQTDMKELLGIEID ELDTKRL
Sbjct  181  DITPIKNPKDCVGLDLNTLDIACSCEINNHEKLTDFKQYQTDMKELLGIEIDEELDTKRL  240

Query  241  IPTysklyslkkyskkfkrlqrkQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300
            IPTYSKLYSLKKYS KFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK
Sbjct  241  IPTYSKLYSLKKYSEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300

Query  301  TDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSINNTSFYQIISFLD  360
            TDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSI N+SFYQIISFLD
Sbjct  301  TDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNASFYQIISFLD  360

Query  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420
            YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS
Sbjct  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420

Query  421  KGLSLFGVGNIHADFKEQSLSC  442
            KGLSLFGVGNIHADFKEQSLSC
Sbjct  421  KGLSLFGVGNIHADFKEQSLSC  442

3) HPELS_05260 in NC_017063


> AY330636|5|G5|37811782|AAR03857.1|Helicobacter_pylori_Ca52|+|3179..4507|tnpB|-|transposase 
B-like protein
Length=442

 Score =  653 bits (2469),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 427/442 (97%), Positives = 432/442 (98%), Gaps = 0/442 (0%)

Query  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKRSS  60
            MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWK+SS
Sbjct  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKKSS  60

Query  61   ELDKAIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVKNRGFPKFKNSKSAKQSFLWN  120
            ELD AIKHHLNARGLSFSSVIAQQ+RMNVERALKDAFKVKNRGFPKFKNSK AKQSFLWN
Sbjct  61   ELDHAIKHHLNARGLSFSSVIAQQARMNVERALKDAFKVKNRGFPKFKNSKFAKQSFLWN  120

Query  121  NQGFSIKESDEERFKTFTLMKMPLLMRMHRDFPPNFKVKQISISCSHRKYFVSFSVEYEQ  180
            NQGFSIKESDEERFK FTLMKMPL+MRMHR+FPPN KVKQI ISCSHRKYFVSFSVEYEQ
Sbjct  121  NQGFSIKESDEERFKIFTLMKMPLMMRMHRNFPPNSKVKQIVISCSHRKYFVSFSVEYEQ  180

Query  181  DITPIKNPKDCVGLDLNILDIACSCGINNHEKLTDFKQYQTDMKELLGIEIDKELDTKRL  240
            DITPIKNPKDCVGLDLN LDIACSC INNHEKLTDFKQYQTDMKELLGIEID ELDTKRL
Sbjct  181  DITPIKNPKDCVGLDLNTLDIACSCEINNHEKLTDFKQYQTDMKELLGIEIDEELDTKRL  240

Query  241  IPTysklyslkkyskkfkrlqrkQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300
            IPTYSKLYSLKKYS KFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK
Sbjct  241  IPTYSKLYSLKKYSEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300

Query  301  TDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSINNTSFYQIISFLD  360
            TDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSI N+SFYQIISFLD
Sbjct  301  TDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNASFYQIISFLD  360

Query  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420
            YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS
Sbjct  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420

Query  421  KGLSLFGVGNIHADFKEQSLSC  442
            KGLSLFGVGNIHADFKEQSLSC
Sbjct  421  KGLSLFGVGNIHADFKEQSLSC  442

4) HPELS_07270 in NC_017063


> AY330636|5|G5|37811782|AAR03857.1|Helicobacter_pylori_Ca52|+|3179..4507|tnpB|-|transposase 
B-like protein
Length=442

 Score =  653 bits (2469),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 427/442 (97%), Positives = 432/442 (98%), Gaps = 0/442 (0%)

Query  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKRSS  60
            MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWK+SS
Sbjct  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKKSS  60

Query  61   ELDKAIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVKNRGFPKFKNSKSAKQSFLWN  120
            ELD AIKHHLNARGLSFSSVIAQQ+RMNVERALKDAFKVKNRGFPKFKNSK AKQSFLWN
Sbjct  61   ELDHAIKHHLNARGLSFSSVIAQQARMNVERALKDAFKVKNRGFPKFKNSKFAKQSFLWN  120

Query  121  NQGFSIKESDEERFKTFTLMKMPLLMRMHRDFPPNFKVKQISISCSHRKYFVSFSVEYEQ  180
            NQGFSIKESDEERFK FTLMKMPL+MRMHR+FPPN KVKQI ISCSHRKYFVSFSVEYEQ
Sbjct  121  NQGFSIKESDEERFKIFTLMKMPLMMRMHRNFPPNSKVKQIVISCSHRKYFVSFSVEYEQ  180

Query  181  DITPIKNPKDCVGLDLNILDIACSCGINNHEKLTDFKQYQTDMKELLGIEIDKELDTKRL  240
            DITPIKNPKDCVGLDLN LDIACSC INNHEKLTDFKQYQTDMKELLGIEID ELDTKRL
Sbjct  181  DITPIKNPKDCVGLDLNTLDIACSCEINNHEKLTDFKQYQTDMKELLGIEIDEELDTKRL  240

Query  241  IPTysklyslkkyskkfkrlqrkQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300
            IPTYSKLYSLKKYS KFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK
Sbjct  241  IPTYSKLYSLKKYSEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300

Query  301  TDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSINNTSFYQIISFLD  360
            TDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSI N+SFYQIISFLD
Sbjct  301  TDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNASFYQIISFLD  360

Query  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420
            YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS
Sbjct  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420

Query  421  KGLSLFGVGNIHADFKEQSLSC  442
            KGLSLFGVGNIHADFKEQSLSC
Sbjct  421  KGLSLFGVGNIHADFKEQSLSC  442

5) join in NC_017064


> AY330636|5|G5|37811782|AAR03857.1|Helicobacter_pylori_Ca52|+|3179..4507|tnpB|-|transposase 
B-like protein
Length=442

 Score =  653 bits (2469),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 427/442 (97%), Positives = 432/442 (98%), Gaps = 0/442 (0%)

Query  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKRSS  60
            MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWK+SS
Sbjct  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKKSS  60

Query  61   ELDKAIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVKNRGFPKFKNSKSAKQSFLWN  120
            ELD AIKHHLNARGLSFSSVIAQQ+RMNVERALKDAFKVKNRGFPKFKNSK AKQSFLWN
Sbjct  61   ELDHAIKHHLNARGLSFSSVIAQQARMNVERALKDAFKVKNRGFPKFKNSKFAKQSFLWN  120

Query  121  NQGFSIKESDEERFKTFTLMKMPLLMRMHRDFPPNFKVKQISISCSHRKYFVSFSVEYEQ  180
            NQGFSIKESDEERFK FTLMKMPL+MRMHR+FPPN KVKQI ISCSHRKYFVSFSVEYEQ
Sbjct  121  NQGFSIKESDEERFKIFTLMKMPLMMRMHRNFPPNSKVKQIVISCSHRKYFVSFSVEYEQ  180

Query  181  DITPIKNPKDCVGLDLNILDIACSCGINNHEKLTDFKQYQTDMKELLGIEIDKELDTKRL  240
            DITPIKNPKDCVGLDLN LDIACSC INNHEKLTDFKQYQTDMKELLGIEID ELDTKRL
Sbjct  181  DITPIKNPKDCVGLDLNTLDIACSCEINNHEKLTDFKQYQTDMKELLGIEIDEELDTKRL  240

Query  241  IPTysklyslkkyskkfkrlqrkQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300
            IPTYSKLYSLKKYS KFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK
Sbjct  241  IPTYSKLYSLKKYSEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300

Query  301  TDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSINNTSFYQIISFLD  360
            TDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSI N+SFYQIISFLD
Sbjct  301  TDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNASFYQIISFLD  360

Query  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420
            YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS
Sbjct  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420

Query  421  KGLSLFGVGNIHADFKEQSLSC  442
            KGLSLFGVGNIHADFKEQSLSC
Sbjct  421  KGLSLFGVGNIHADFKEQSLSC  442

6) HPELS_08105 in NC_017063


> AY330636|5|G5|37811782|AAR03857.1|Helicobacter_pylori_Ca52|+|3179..4507|tnpB|-|transposase 
B-like protein
Length=442

 Score =  620 bits (2342),  Expect = 5e-179, Method: Compositional matrix adjust.
 Identities = 406/422 (97%), Positives = 412/422 (98%), Gaps = 0/422 (0%)

Query  1    MQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKRSSELDKAIKHHLNARGLSFSSV  60
            +QHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWK+SSELD AIKHHLNARGLSFSSV
Sbjct  21   LQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKKSSELDHAIKHHLNARGLSFSSV  80

Query  61   IAQQSRMNVERALKDAFKVKNRGFPKFKNSKSAKQSFLWNNQGFSIKESDEERFKTFTLM  120
            IAQQ+RMNVERALKDAFKVKNRGFPKFKNSK AKQSFLWNNQGFSIKESDEERFK FTLM
Sbjct  81   IAQQARMNVERALKDAFKVKNRGFPKFKNSKFAKQSFLWNNQGFSIKESDEERFKIFTLM  140

Query  121  KMPLLMRMHRDFPPNFKVKQISISCSHRKYFVSFSVEYEQDITPIKNPKDCVGLDLNILD  180
            KMPL+MRMHR+FPPN KVKQI ISCSHRKYFVSFSVEYEQDITPIKNPKDCVGLDLN LD
Sbjct  141  KMPLMMRMHRNFPPNSKVKQIVISCSHRKYFVSFSVEYEQDITPIKNPKDCVGLDLNTLD  200

Query  181  IACSCGINNHEKLTDFKQYQTDMKELLGIEIDKELDTKRLIPTysklyslkkyskkfkrl  240
            IACSC INNHEKLTDFKQYQTDMKELLGIEID ELDTKRLIPTYSKLYSLKKYS KFKRL
Sbjct  201  IACSCEINNHEKLTDFKQYQTDMKELLGIEIDEELDTKRLIPTYSKLYSLKKYSEKFKRL  260

Query  241  qrkQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQKTDRYHKITSELSKQFELIVV  300
            QRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQKTDRYHKITSELSKQFELIVV
Sbjct  261  QRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQKTDRYHKITSELSKQFELIVV  320

Query  301  EDLQVKNMTKRAKLKNVKQKSGLNQSINNTSFYQIISFLDYKQQHNGKLLVKVPPQYTSK  360
            EDLQVKNMTKRAKLKNVKQKSGLNQSI N+SFYQIISFLDYKQQHNGKLLVKVPPQYTSK
Sbjct  321  EDLQVKNMTKRAKLKNVKQKSGLNQSILNASFYQIISFLDYKQQHNGKLLVKVPPQYTSK  380

Query  361  TCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGLSLFGVGNIHADFKEQSL  420
            TCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGLSLFGVGNIHADFKEQSL
Sbjct  381  TCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGLSLFGVGNIHADFKEQSL  440

Query  421  SC  422
            SC
Sbjct  441  SC  442

7) tnpB in NC_000921


> AY330636|5|G5|37811782|AAR03857.1|Helicobacter_pylori_Ca52|+|3179..4507|tnpB|-|transposase 
B-like protein
Length=442

 Score =  619 bits (2339),  Expect = 8e-179, Method: Compositional matrix adjust.
 Identities = 419/442 (95%), Positives = 427/442 (97%), Gaps = 0/442 (0%)

Query  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYEKNKDLPPKERTRKKSS  60
            MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYE NKDLPPKER +KKSS
Sbjct  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKKSS  60

Query  61   ELDKAIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVKNRGFPKFKNSKSAKQSFSWN  120
            ELD AIKHHLNARGLSFSSVIAQQ+RMNVERALKDAFKVKNRGFPKFKNSK AKQSF WN
Sbjct  61   ELDHAIKHHLNARGLSFSSVIAQQARMNVERALKDAFKVKNRGFPKFKNSKFAKQSFLWN  120

Query  121  NQGFFIKESDEERFKIFTLMKMPLMMCMHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQ  180
            NQGF IKESDEERFKIFTLMKMPLMM MHR+FPP+SKVKQIVISCSHRKYFVSFSVEYEQ
Sbjct  121  NQGFSIKESDEERFKIFTLMKMPLMMRMHRNFPPNSKVKQIVISCSHRKYFVSFSVEYEQ  180

Query  181  DITPIKNPKNGVGLDLNILDIACSCGVNNHKKLTDFKRYSTDMKellgieideeldTKRL  240
            DITPIKNPK+ VGLDLN LDIACSC +NNH KLTDFK+Y TDMKELLGIEIDEELDTKRL
Sbjct  181  DITPIKNPKDCVGLDLNTLDIACSCEINNHEKLTDFKQYQTDMKELLGIEIDEELDTKRL  240

Query  241  IPTYsklyslkkhskkfkrlqrkQSRRVLKSKQNKTKLGGNFYKTQKKLNQVFDKSSHQK  300
            IPTYSKLYSLKK S KFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQ FDKSSHQK
Sbjct  241  IPTYSKLYSLKKYSEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300

Query  301  TDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLD  360
            TDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILN+SFYQIISFLD
Sbjct  301  TDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNASFYQIISFLD  360

Query  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420
            YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS
Sbjct  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420

Query  421  KGLSLFGVGNIHADFKEQSLSC  442
            KGLSLFGVGNIHADFKEQSLSC
Sbjct  421  KGLSLFGVGNIHADFKEQSLSC  442

8) HPSA_02765 in NC_017361


> AY330636|5|G5|37811782|AAR03857.1|Helicobacter_pylori_Ca52|+|3179..4507|tnpB|-|transposase 
B-like protein
Length=442

 Score =  612 bits (2311),  Expect = 1e-176, Method: Compositional matrix adjust.
 Identities = 387/442 (88%), Positives = 414/442 (94%), Gaps = 0/442 (0%)

Query  1    MKVNKGFKFRLYPTKEQQDKLQHSFFVYNQAYNIGLNLQQEQYEKNKNLPPKERKYKKSS  60
            MKVNKGFKFRLYPTKEQQDKLQH FFVYNQAYNIGLNL QEQYE NK+LPPKERK KKSS
Sbjct  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKKSS  60

Query  61   ELDNAIKQCLRARDLPFSAVIAQQSRMNVERAFKDALKIKDRGFPKFKNSKFAKQSFSWS  120
            ELD+AIK+ L AR+L+FS+VIAQQ+RMNVERA+KDA+K+K+RGFPKFKNSKFAKQSF W+
Sbjct  61   ELDHAIKHHLNARGLSFSSVIAQQARMNVERALKDAFKVKNRGFPKFKNSKFAKQSFLWN  120

Query  121  NQGFSIKESDDERFKVFTLMKMPLMMRMHRDFPPNAKIKQITISCRHRKYFVSFSVEYKQ  180
            NQGFSIKESD+ERFK+FTLMKMPLMMRMHR+FPPN+K+KQI ISC HRKYFVSFSVEY Q
Sbjct  121  NQGFSIKESDEERFKIFTLMKMPLMMRMHRNFPPNSKVKQIVISCSHRKYFVSFSVEYEQ  180

Query  181  DITAIKNPKDCVGLDLNVLDIACSCGVNNPEKLTDFKRYIQDMKELLGLEIDEKTDPKRL  240
            DIT+IKNPKDCVGLDLN LDIACSC +NN EKLTDFK+Y  DMKELLG+EIDE  D KRL
Sbjct  181  DITPIKNPKDCVGLDLNTLDIACSCEINNHEKLTDFKQYQTDMKELLGIEIDEELDTKRL  240

Query  241  IPTCsklyslkkysEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFERSSHQK  300
            IPT SKLYSLKKYSEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAF++SSHQK
Sbjct  241  IPTYSKLYSLKKYSEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300

Query  301  TDRYHKITSELSKQFEWIAVEDLQVKNMIKRAKLKNAKQKSGLNKSILNASFYQIIFFLD  360
            TDRYHKITSELSKQFE I VEDLQVKNM KRAKLKN KQKSGLN+SILNASFYQII FLD
Sbjct  301  TDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNASFYQIISFLD  360

Query  361  YKQQHNGKLLVKVPPQYTSKTCCNCGSINPKLKLNHRQYWCSDCGYKEHRDINAANNILS  420
            YKQQHNGKLLVKVPPQYTSKTC  CG+IN KLKLNHRQYWC +CGY+EHRDINAANNILS
Sbjct  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420

Query  421  KGLSLFGVGNIHADFKEQSLSC  442
            KGLSLFGVGNIHADFKEQSLSC
Sbjct  421  KGLSLFGVGNIHADFKEQSLSC  442

9) HPSA_07580 in NC_017361


> AY330636|5|G5|37811782|AAR03857.1|Helicobacter_pylori_Ca52|+|3179..4507|tnpB|-|transposase 
B-like protein
Length=442

 Score =  612 bits (2311),  Expect = 1e-176, Method: Compositional matrix adjust.
 Identities = 387/442 (88%), Positives = 414/442 (94%), Gaps = 0/442 (0%)

Query  1    MKVNKGFKFRLYPTKEQQDKLQHSFFVYNQAYNIGLNLQQEQYEKNKNLPPKERKYKKSS  60
            MKVNKGFKFRLYPTKEQQDKLQH FFVYNQAYNIGLNL QEQYE NK+LPPKERK KKSS
Sbjct  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKKSS  60

Query  61   ELDNAIKQCLRARDLPFSAVIAQQSRMNVERAFKDALKIKDRGFPKFKNSKFAKQSFSWS  120
            ELD+AIK+ L AR+L+FS+VIAQQ+RMNVERA+KDA+K+K+RGFPKFKNSKFAKQSF W+
Sbjct  61   ELDHAIKHHLNARGLSFSSVIAQQARMNVERALKDAFKVKNRGFPKFKNSKFAKQSFLWN  120

Query  121  NQGFSIKESDDERFKVFTLMKMPLMMRMHRDFPPNAKIKQITISCRHRKYFVSFSVEYKQ  180
            NQGFSIKESD+ERFK+FTLMKMPLMMRMHR+FPPN+K+KQI ISC HRKYFVSFSVEY Q
Sbjct  121  NQGFSIKESDEERFKIFTLMKMPLMMRMHRNFPPNSKVKQIVISCSHRKYFVSFSVEYEQ  180

Query  181  DITAIKNPKDCVGLDLNVLDIACSCGVNNPEKLTDFKRYIQDMKELLGLEIDEKTDPKRL  240
            DIT+IKNPKDCVGLDLN LDIACSC +NN EKLTDFK+Y  DMKELLG+EIDE  D KRL
Sbjct  181  DITPIKNPKDCVGLDLNTLDIACSCEINNHEKLTDFKQYQTDMKELLGIEIDEELDTKRL  240

Query  241  IPTCsklyslkkysEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFERSSHQK  300
            IPT SKLYSLKKYSEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAF++SSHQK
Sbjct  241  IPTYSKLYSLKKYSEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300

Query  301  TDRYHKITSELSKQFEWIAVEDLQVKNMIKRAKLKNAKQKSGLNKSILNASFYQIIFFLD  360
            TDRYHKITSELSKQFE I VEDLQVKNM KRAKLKN KQKSGLN+SILNASFYQII FLD
Sbjct  301  TDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNASFYQIISFLD  360

Query  361  YKQQHNGKLLVKVPPQYTSKTCCNCGSINPKLKLNHRQYWCSDCGYKEHRDINAANNILS  420
            YKQQHNGKLLVKVPPQYTSKTC  CG+IN KLKLNHRQYWC +CGY+EHRDINAANNILS
Sbjct  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420

Query  421  KGLSLFGVGNIHADFKEQSLSC  442
            KGLSLFGVGNIHADFKEQSLSC
Sbjct  421  KGLSLFGVGNIHADFKEQSLSC  442

10) HPSA_08259 in NC_017373


> AY330636|5|G5|37811782|AAR03857.1|Helicobacter_pylori_Ca52|+|3179..4507|tnpB|-|transposase 
B-like protein
Length=442

 Score =  612 bits (2311),  Expect = 1e-176, Method: Compositional matrix adjust.
 Identities = 387/442 (88%), Positives = 414/442 (94%), Gaps = 0/442 (0%)

Query  1    MKVNKGFKFRLYPTKEQQDKLQHSFFVYNQAYNIGLNLQQEQYEKNKNLPPKERKYKKSS  60
            MKVNKGFKFRLYPTKEQQDKLQH FFVYNQAYNIGLNL QEQYE NK+LPPKERK KKSS
Sbjct  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKKSS  60

Query  61   ELDNAIKQCLRARDLPFSAVIAQQSRMNVERAFKDALKIKDRGFPKFKNSKFAKQSFSWS  120
            ELD+AIK+ L AR+L+FS+VIAQQ+RMNVERA+KDA+K+K+RGFPKFKNSKFAKQSF W+
Sbjct  61   ELDHAIKHHLNARGLSFSSVIAQQARMNVERALKDAFKVKNRGFPKFKNSKFAKQSFLWN  120

Query  121  NQGFSIKESDDERFKVFTLMKMPLMMRMHRDFPPNAKIKQITISCRHRKYFVSFSVEYKQ  180
            NQGFSIKESD+ERFK+FTLMKMPLMMRMHR+FPPN+K+KQI ISC HRKYFVSFSVEY Q
Sbjct  121  NQGFSIKESDEERFKIFTLMKMPLMMRMHRNFPPNSKVKQIVISCSHRKYFVSFSVEYEQ  180

Query  181  DITAIKNPKDCVGLDLNVLDIACSCGVNNPEKLTDFKRYIQDMKELLGLEIDEKTDPKRL  240
            DIT+IKNPKDCVGLDLN LDIACSC +NN EKLTDFK+Y  DMKELLG+EIDE  D KRL
Sbjct  181  DITPIKNPKDCVGLDLNTLDIACSCEINNHEKLTDFKQYQTDMKELLGIEIDEELDTKRL  240

Query  241  IPTCsklyslkkysEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFERSSHQK  300
            IPT SKLYSLKKYSEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAF++SSHQK
Sbjct  241  IPTYSKLYSLKKYSEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300

Query  301  TDRYHKITSELSKQFEWIAVEDLQVKNMIKRAKLKNAKQKSGLNKSILNASFYQIIFFLD  360
            TDRYHKITSELSKQFE I VEDLQVKNM KRAKLKN KQKSGLN+SILNASFYQII FLD
Sbjct  301  TDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNASFYQIISFLD  360

Query  361  YKQQHNGKLLVKVPPQYTSKTCCNCGSINPKLKLNHRQYWCSDCGYKEHRDINAANNILS  420
            YKQQHNGKLLVKVPPQYTSKTC  CG+IN KLKLNHRQYWC +CGY+EHRDINAANNILS
Sbjct  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420

Query  421  KGLSLFGVGNIHADFKEQSLSC  442
            KGLSLFGVGNIHADFKEQSLSC
Sbjct  421  KGLSLFGVGNIHADFKEQSLSC  442

11) HPSA_08289 in NC_017373


> AY330636|5|G5|37811782|AAR03857.1|Helicobacter_pylori_Ca52|+|3179..4507|tnpB|-|transposase 
B-like protein
Length=442

 Score =  612 bits (2311),  Expect = 1e-176, Method: Compositional matrix adjust.
 Identities = 387/442 (88%), Positives = 414/442 (94%), Gaps = 0/442 (0%)

Query  1    MKVNKGFKFRLYPTKEQQDKLQHSFFVYNQAYNIGLNLQQEQYEKNKNLPPKERKYKKSS  60
            MKVNKGFKFRLYPTKEQQDKLQH FFVYNQAYNIGLNL QEQYE NK+LPPKERK KKSS
Sbjct  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKKSS  60

Query  61   ELDNAIKQCLRARDLPFSAVIAQQSRMNVERAFKDALKIKDRGFPKFKNSKFAKQSFSWS  120
            ELD+AIK+ L AR+L+FS+VIAQQ+RMNVERA+KDA+K+K+RGFPKFKNSKFAKQSF W+
Sbjct  61   ELDHAIKHHLNARGLSFSSVIAQQARMNVERALKDAFKVKNRGFPKFKNSKFAKQSFLWN  120

Query  121  NQGFSIKESDDERFKVFTLMKMPLMMRMHRDFPPNAKIKQITISCRHRKYFVSFSVEYKQ  180
            NQGFSIKESD+ERFK+FTLMKMPLMMRMHR+FPPN+K+KQI ISC HRKYFVSFSVEY Q
Sbjct  121  NQGFSIKESDEERFKIFTLMKMPLMMRMHRNFPPNSKVKQIVISCSHRKYFVSFSVEYEQ  180

Query  181  DITAIKNPKDCVGLDLNVLDIACSCGVNNPEKLTDFKRYIQDMKELLGLEIDEKTDPKRL  240
            DIT+IKNPKDCVGLDLN LDIACSC +NN EKLTDFK+Y  DMKELLG+EIDE  D KRL
Sbjct  181  DITPIKNPKDCVGLDLNTLDIACSCEINNHEKLTDFKQYQTDMKELLGIEIDEELDTKRL  240

Query  241  IPTCsklyslkkysEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFERSSHQK  300
            IPT SKLYSLKKYSEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAF++SSHQK
Sbjct  241  IPTYSKLYSLKKYSEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300

Query  301  TDRYHKITSELSKQFEWIAVEDLQVKNMIKRAKLKNAKQKSGLNKSILNASFYQIIFFLD  360
            TDRYHKITSELSKQFE I VEDLQVKNM KRAKLKN KQKSGLN+SILNASFYQII FLD
Sbjct  301  TDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNASFYQIISFLD  360

Query  361  YKQQHNGKLLVKVPPQYTSKTCCNCGSINPKLKLNHRQYWCSDCGYKEHRDINAANNILS  420
            YKQQHNGKLLVKVPPQYTSKTC  CG+IN KLKLNHRQYWC +CGY+EHRDINAANNILS
Sbjct  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420

Query  421  KGLSLFGVGNIHADFKEQSLSC  442
            KGLSLFGVGNIHADFKEQSLSC
Sbjct  421  KGLSLFGVGNIHADFKEQSLSC  442

12) HPSA_08344 in NC_017373


> AY330636|5|G5|37811782|AAR03857.1|Helicobacter_pylori_Ca52|+|3179..4507|tnpB|-|transposase 
B-like protein
Length=442

 Score =  612 bits (2311),  Expect = 1e-176, Method: Compositional matrix adjust.
 Identities = 387/442 (88%), Positives = 414/442 (94%), Gaps = 0/442 (0%)

Query  1    MKVNKGFKFRLYPTKEQQDKLQHSFFVYNQAYNIGLNLQQEQYEKNKNLPPKERKYKKSS  60
            MKVNKGFKFRLYPTKEQQDKLQH FFVYNQAYNIGLNL QEQYE NK+LPPKERK KKSS
Sbjct  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKKSS  60

Query  61   ELDNAIKQCLRARDLPFSAVIAQQSRMNVERAFKDALKIKDRGFPKFKNSKFAKQSFSWS  120
            ELD+AIK+ L AR+L+FS+VIAQQ+RMNVERA+KDA+K+K+RGFPKFKNSKFAKQSF W+
Sbjct  61   ELDHAIKHHLNARGLSFSSVIAQQARMNVERALKDAFKVKNRGFPKFKNSKFAKQSFLWN  120

Query  121  NQGFSIKESDDERFKVFTLMKMPLMMRMHRDFPPNAKIKQITISCRHRKYFVSFSVEYKQ  180
            NQGFSIKESD+ERFK+FTLMKMPLMMRMHR+FPPN+K+KQI ISC HRKYFVSFSVEY Q
Sbjct  121  NQGFSIKESDEERFKIFTLMKMPLMMRMHRNFPPNSKVKQIVISCSHRKYFVSFSVEYEQ  180

Query  181  DITAIKNPKDCVGLDLNVLDIACSCGVNNPEKLTDFKRYIQDMKELLGLEIDEKTDPKRL  240
            DIT+IKNPKDCVGLDLN LDIACSC +NN EKLTDFK+Y  DMKELLG+EIDE  D KRL
Sbjct  181  DITPIKNPKDCVGLDLNTLDIACSCEINNHEKLTDFKQYQTDMKELLGIEIDEELDTKRL  240

Query  241  IPTCsklyslkkysEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFERSSHQK  300
            IPT SKLYSLKKYSEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAF++SSHQK
Sbjct  241  IPTYSKLYSLKKYSEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300

Query  301  TDRYHKITSELSKQFEWIAVEDLQVKNMIKRAKLKNAKQKSGLNKSILNASFYQIIFFLD  360
            TDRYHKITSELSKQFE I VEDLQVKNM KRAKLKN KQKSGLN+SILNASFYQII FLD
Sbjct  301  TDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNASFYQIISFLD  360

Query  361  YKQQHNGKLLVKVPPQYTSKTCCNCGSINPKLKLNHRQYWCSDCGYKEHRDINAANNILS  420
            YKQQHNGKLLVKVPPQYTSKTC  CG+IN KLKLNHRQYWC +CGY+EHRDINAANNILS
Sbjct  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420

Query  421  KGLSLFGVGNIHADFKEQSLSC  442
            KGLSLFGVGNIHADFKEQSLSC
Sbjct  421  KGLSLFGVGNIHADFKEQSLSC  442

13) HCD_01195 in NC_017735


> AY330636|5|G5|37811782|AAR03857.1|Helicobacter_pylori_Ca52|+|3179..4507|tnpB|-|transposase 
B-like protein
Length=442

 Score =  560 bits (2115),  Expect = 4e-161, Method: Compositional matrix adjust.
 Identities = 356/442 (81%), Positives = 400/442 (91%), Gaps = 2/442 (0%)

Query  1    MKVNKGFKFRLYPTKEQQTKLQHSFFVYNQAYNICLNLQQEQYEKNKDLPTKQRKWQKSS  60
            MKVNKGFKFRLYPTKEQQ KLQH FFVYNQAYNI LNL QEQYE NKDLP K+RKW+KSS
Sbjct  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKKSS  60

Query  61   ELDSAIKHHLKARNLSFSSVVAQQSRMNAERALRDAFKVKNRGFPKFKNSKFAKQSFTWN  120
            ELD AIKHHL+AR LSFSSV+AQQ+RMN ERAL+DAFKVKNRGFPKFKNSKFAKQSF WN
Sbjct  61   ELDHAIKHHLNARGLSFSSVIAQQARMNVERALKDAFKVKNRGFPKFKNSKFAKQSFLWN  120

Query  121  NQGFSIKDFNE-RFKMFNLMKMPLKMRMHRDLPLNAKIKQIVVSCSHQKYFVSFSIEYEK  179
            NQGFSIK+ +E RFK+F LMKMPL MRMHR++P N+K+KQIV+SCSH+KYFVSFS+EYE+
Sbjct  121  NQGFSIKESDEERFKIFTLMKMPLMMRMHRNFPPNSKVKQIVISCSHRKYFVSFSVEYEQ  180

Query  180  ELNTIKEPRNCVGVDLNIYDIALSVDLKEYEKLTDLEQYQKDMKEL-GLKVDENINLKRL  238
            ++  IK+P++CVG+DLN  DIA S ++++ EKLTD+ QYQ DMKEL G+ +DE+++ KRL
Sbjct  181  DITPIKNPKDCVGLDLNTLDIACSCEINNHEKLTDFKQYQTDMKELLGIEIDEELDTKRL  240

Query  239  IPTYSKLHSFKKYSKEFKRLQRKQSRRVLKSKQNKIKLGGNFYKTQKKLNKAFDKSSYQK  298
            IPTYSKL S+KKYS  FKRLQRKQSRRVLKSKQNK KLGGNFYKTQKKLN+AFDKSS QK
Sbjct  241  IPTYSKLYSLKKYSEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300

Query  299  LDRYHKITSELSKQFELIVVEDLQIKNMTKRAKLKNVKQKSGLNKSILNTSFYQIISFLD  358
             DRYHKITSELSKQFELIVVEDLQ+KNMTKRAKLKNVKQKSGLN+SILN+SFYQIISFLD
Sbjct  301  TDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNASFYQIISFLD  360

Query  359  YKQQHNGKLLVKAPPQYTSKTCHSCGQINHELKLNHREYLCQNCGYIEHRDINAASNIls  418
            YKQQHNGKLLVK PPQYTSKTCH CG+INH LKLNHR+Y C +CGY EHRDINAA+NILS
Sbjct  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420

Query  419  kglsllglgnslADFKEQSLSY  440
            KGLSL+G+GN  ADFKEQSLS 
Sbjct  421  KGLSLFGVGNIHADFKEQSLSC  442

14) HCD_05110 in NC_017735


> AY330636|5|G5|37811782|AAR03857.1|Helicobacter_pylori_Ca52|+|3179..4507|tnpB|-|transposase 
B-like protein
Length=442

 Score =  560 bits (2115),  Expect = 4e-161, Method: Compositional matrix adjust.
 Identities = 356/442 (81%), Positives = 400/442 (91%), Gaps = 2/442 (0%)

Query  1    MKVNKGFKFRLYPTKEQQTKLQHSFFVYNQAYNICLNLQQEQYEKNKDLPTKQRKWQKSS  60
            MKVNKGFKFRLYPTKEQQ KLQH FFVYNQAYNI LNL QEQYE NKDLP K+RKW+KSS
Sbjct  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKKSS  60

Query  61   ELDSAIKHHLKARNLSFSSVVAQQSRMNAERALRDAFKVKNRGFPKFKNSKFAKQSFTWN  120
            ELD AIKHHL+AR LSFSSV+AQQ+RMN ERAL+DAFKVKNRGFPKFKNSKFAKQSF WN
Sbjct  61   ELDHAIKHHLNARGLSFSSVIAQQARMNVERALKDAFKVKNRGFPKFKNSKFAKQSFLWN  120

Query  121  NQGFSIKDFNE-RFKMFNLMKMPLKMRMHRDLPLNAKIKQIVVSCSHQKYFVSFSIEYEK  179
            NQGFSIK+ +E RFK+F LMKMPL MRMHR++P N+K+KQIV+SCSH+KYFVSFS+EYE+
Sbjct  121  NQGFSIKESDEERFKIFTLMKMPLMMRMHRNFPPNSKVKQIVISCSHRKYFVSFSVEYEQ  180

Query  180  ELNTIKEPRNCVGVDLNIYDIALSVDLKEYEKLTDLEQYQKDMKEL-GLKVDENINLKRL  238
            ++  IK+P++CVG+DLN  DIA S ++++ EKLTD+ QYQ DMKEL G+ +DE+++ KRL
Sbjct  181  DITPIKNPKDCVGLDLNTLDIACSCEINNHEKLTDFKQYQTDMKELLGIEIDEELDTKRL  240

Query  239  IPTYSKLHSFKKYSKEFKRLQRKQSRRVLKSKQNKIKLGGNFYKTQKKLNKAFDKSSYQK  298
            IPTYSKL S+KKYS  FKRLQRKQSRRVLKSKQNK KLGGNFYKTQKKLN+AFDKSS QK
Sbjct  241  IPTYSKLYSLKKYSEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300

Query  299  LDRYHKITSELSKQFELIVVEDLQIKNMTKRAKLKNVKQKSGLNKSILNTSFYQIISFLD  358
             DRYHKITSELSKQFELIVVEDLQ+KNMTKRAKLKNVKQKSGLN+SILN+SFYQIISFLD
Sbjct  301  TDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNASFYQIISFLD  360

Query  359  YKQQHNGKLLVKAPPQYTSKTCHSCGQINHELKLNHREYLCQNCGYIEHRDINAASNIls  418
            YKQQHNGKLLVK PPQYTSKTCH CG+INH LKLNHR+Y C +CGY EHRDINAA+NILS
Sbjct  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420

Query  419  kglsllglgnslADFKEQSLSY  440
            KGLSL+G+GN  ADFKEQSLS 
Sbjct  421  KGLSLFGVGNIHADFKEQSLSC  442

15) HCD_07850 in NC_017735


> AY330636|5|G5|37811782|AAR03857.1|Helicobacter_pylori_Ca52|+|3179..4507|tnpB|-|transposase 
B-like protein
Length=442

 Score =  560 bits (2115),  Expect = 4e-161, Method: Compositional matrix adjust.
 Identities = 356/442 (81%), Positives = 400/442 (91%), Gaps = 2/442 (0%)

Query  1    MKVNKGFKFRLYPTKEQQTKLQHSFFVYNQAYNICLNLQQEQYEKNKDLPTKQRKWQKSS  60
            MKVNKGFKFRLYPTKEQQ KLQH FFVYNQAYNI LNL QEQYE NKDLP K+RKW+KSS
Sbjct  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKKSS  60

Query  61   ELDSAIKHHLKARNLSFSSVVAQQSRMNAERALRDAFKVKNRGFPKFKNSKFAKQSFTWN  120
            ELD AIKHHL+AR LSFSSV+AQQ+RMN ERAL+DAFKVKNRGFPKFKNSKFAKQSF WN
Sbjct  61   ELDHAIKHHLNARGLSFSSVIAQQARMNVERALKDAFKVKNRGFPKFKNSKFAKQSFLWN  120

Query  121  NQGFSIKDFNE-RFKMFNLMKMPLKMRMHRDLPLNAKIKQIVVSCSHQKYFVSFSIEYEK  179
            NQGFSIK+ +E RFK+F LMKMPL MRMHR++P N+K+KQIV+SCSH+KYFVSFS+EYE+
Sbjct  121  NQGFSIKESDEERFKIFTLMKMPLMMRMHRNFPPNSKVKQIVISCSHRKYFVSFSVEYEQ  180

Query  180  ELNTIKEPRNCVGVDLNIYDIALSVDLKEYEKLTDLEQYQKDMKEL-GLKVDENINLKRL  238
            ++  IK+P++CVG+DLN  DIA S ++++ EKLTD+ QYQ DMKEL G+ +DE+++ KRL
Sbjct  181  DITPIKNPKDCVGLDLNTLDIACSCEINNHEKLTDFKQYQTDMKELLGIEIDEELDTKRL  240

Query  239  IPTYSKLHSFKKYSKEFKRLQRKQSRRVLKSKQNKIKLGGNFYKTQKKLNKAFDKSSYQK  298
            IPTYSKL S+KKYS  FKRLQRKQSRRVLKSKQNK KLGGNFYKTQKKLN+AFDKSS QK
Sbjct  241  IPTYSKLYSLKKYSEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300

Query  299  LDRYHKITSELSKQFELIVVEDLQIKNMTKRAKLKNVKQKSGLNKSILNTSFYQIISFLD  358
             DRYHKITSELSKQFELIVVEDLQ+KNMTKRAKLKNVKQKSGLN+SILN+SFYQIISFLD
Sbjct  301  TDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNASFYQIISFLD  360

Query  359  YKQQHNGKLLVKAPPQYTSKTCHSCGQINHELKLNHREYLCQNCGYIEHRDINAASNIls  418
            YKQQHNGKLLVK PPQYTSKTCH CG+INH LKLNHR+Y C +CGY EHRDINAA+NILS
Sbjct  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420

Query  419  kglsllglgnslADFKEQSLSY  440
            KGLSL+G+GN  ADFKEQSLS 
Sbjct  421  KGLSLFGVGNIHADFKEQSLSC  442

16) HCD_08095 in NC_017735


> AY330636|5|G5|37811782|AAR03857.1|Helicobacter_pylori_Ca52|+|3179..4507|tnpB|-|transposase 
B-like protein
Length=442

 Score =  560 bits (2115),  Expect = 4e-161, Method: Compositional matrix adjust.
 Identities = 356/442 (81%), Positives = 400/442 (91%), Gaps = 2/442 (0%)

Query  1    MKVNKGFKFRLYPTKEQQTKLQHSFFVYNQAYNICLNLQQEQYEKNKDLPTKQRKWQKSS  60
            MKVNKGFKFRLYPTKEQQ KLQH FFVYNQAYNI LNL QEQYE NKDLP K+RKW+KSS
Sbjct  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKKSS  60

Query  61   ELDSAIKHHLKARNLSFSSVVAQQSRMNAERALRDAFKVKNRGFPKFKNSKFAKQSFTWN  120
            ELD AIKHHL+AR LSFSSV+AQQ+RMN ERAL+DAFKVKNRGFPKFKNSKFAKQSF WN
Sbjct  61   ELDHAIKHHLNARGLSFSSVIAQQARMNVERALKDAFKVKNRGFPKFKNSKFAKQSFLWN  120

Query  121  NQGFSIKDFNE-RFKMFNLMKMPLKMRMHRDLPLNAKIKQIVVSCSHQKYFVSFSIEYEK  179
            NQGFSIK+ +E RFK+F LMKMPL MRMHR++P N+K+KQIV+SCSH+KYFVSFS+EYE+
Sbjct  121  NQGFSIKESDEERFKIFTLMKMPLMMRMHRNFPPNSKVKQIVISCSHRKYFVSFSVEYEQ  180

Query  180  ELNTIKEPRNCVGVDLNIYDIALSVDLKEYEKLTDLEQYQKDMKEL-GLKVDENINLKRL  238
            ++  IK+P++CVG+DLN  DIA S ++++ EKLTD+ QYQ DMKEL G+ +DE+++ KRL
Sbjct  181  DITPIKNPKDCVGLDLNTLDIACSCEINNHEKLTDFKQYQTDMKELLGIEIDEELDTKRL  240

Query  239  IPTYSKLHSFKKYSKEFKRLQRKQSRRVLKSKQNKIKLGGNFYKTQKKLNKAFDKSSYQK  298
            IPTYSKL S+KKYS  FKRLQRKQSRRVLKSKQNK KLGGNFYKTQKKLN+AFDKSS QK
Sbjct  241  IPTYSKLYSLKKYSEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300

Query  299  LDRYHKITSELSKQFELIVVEDLQIKNMTKRAKLKNVKQKSGLNKSILNTSFYQIISFLD  358
             DRYHKITSELSKQFELIVVEDLQ+KNMTKRAKLKNVKQKSGLN+SILN+SFYQIISFLD
Sbjct  301  TDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNASFYQIISFLD  360

Query  359  YKQQHNGKLLVKAPPQYTSKTCHSCGQINHELKLNHREYLCQNCGYIEHRDINAASNIls  418
            YKQQHNGKLLVK PPQYTSKTCH CG+INH LKLNHR+Y C +CGY EHRDINAA+NILS
Sbjct  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420

Query  419  kglsllglgnslADFKEQSLSY  440
            KGLSL+G+GN  ADFKEQSLS 
Sbjct  421  KGLSLFGVGNIHADFKEQSLSC  442

17) HCD_08330 in NC_017735


> AY330636|5|G5|37811782|AAR03857.1|Helicobacter_pylori_Ca52|+|3179..4507|tnpB|-|transposase 
B-like protein
Length=442

 Score =  560 bits (2115),  Expect = 4e-161, Method: Compositional matrix adjust.
 Identities = 356/442 (81%), Positives = 400/442 (91%), Gaps = 2/442 (0%)

Query  1    MKVNKGFKFRLYPTKEQQTKLQHSFFVYNQAYNICLNLQQEQYEKNKDLPTKQRKWQKSS  60
            MKVNKGFKFRLYPTKEQQ KLQH FFVYNQAYNI LNL QEQYE NKDLP K+RKW+KSS
Sbjct  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKKSS  60

Query  61   ELDSAIKHHLKARNLSFSSVVAQQSRMNAERALRDAFKVKNRGFPKFKNSKFAKQSFTWN  120
            ELD AIKHHL+AR LSFSSV+AQQ+RMN ERAL+DAFKVKNRGFPKFKNSKFAKQSF WN
Sbjct  61   ELDHAIKHHLNARGLSFSSVIAQQARMNVERALKDAFKVKNRGFPKFKNSKFAKQSFLWN  120

Query  121  NQGFSIKDFNE-RFKMFNLMKMPLKMRMHRDLPLNAKIKQIVVSCSHQKYFVSFSIEYEK  179
            NQGFSIK+ +E RFK+F LMKMPL MRMHR++P N+K+KQIV+SCSH+KYFVSFS+EYE+
Sbjct  121  NQGFSIKESDEERFKIFTLMKMPLMMRMHRNFPPNSKVKQIVISCSHRKYFVSFSVEYEQ  180

Query  180  ELNTIKEPRNCVGVDLNIYDIALSVDLKEYEKLTDLEQYQKDMKEL-GLKVDENINLKRL  238
            ++  IK+P++CVG+DLN  DIA S ++++ EKLTD+ QYQ DMKEL G+ +DE+++ KRL
Sbjct  181  DITPIKNPKDCVGLDLNTLDIACSCEINNHEKLTDFKQYQTDMKELLGIEIDEELDTKRL  240

Query  239  IPTYSKLHSFKKYSKEFKRLQRKQSRRVLKSKQNKIKLGGNFYKTQKKLNKAFDKSSYQK  298
            IPTYSKL S+KKYS  FKRLQRKQSRRVLKSKQNK KLGGNFYKTQKKLN+AFDKSS QK
Sbjct  241  IPTYSKLYSLKKYSEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300

Query  299  LDRYHKITSELSKQFELIVVEDLQIKNMTKRAKLKNVKQKSGLNKSILNTSFYQIISFLD  358
             DRYHKITSELSKQFELIVVEDLQ+KNMTKRAKLKNVKQKSGLN+SILN+SFYQIISFLD
Sbjct  301  TDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNASFYQIISFLD  360

Query  359  YKQQHNGKLLVKAPPQYTSKTCHSCGQINHELKLNHREYLCQNCGYIEHRDINAASNIls  418
            YKQQHNGKLLVK PPQYTSKTCH CG+INH LKLNHR+Y C +CGY EHRDINAA+NILS
Sbjct  361  YKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILS  420

Query  419  kglsllglgnslADFKEQSLSY  440
            KGLSL+G+GN  ADFKEQSLS 
Sbjct  421  KGLSLFGVGNIHADFKEQSLSC  442

18) HPAKL117_04690 in NC_019560


> AY330636|5|G5|37811782|AAR03857.1|Helicobacter_pylori_Ca52|+|3179..4507|tnpB|-|transposase 
B-like protein
Length=442

 Score =  554 bits (2092),  Expect = 3e-159, Method: Compositional matrix adjust.
 Identities = 365/432 (85%), Positives = 397/432 (92%), Gaps = 0/432 (0%)

Query  1    MYPTKEQESKLQHCFFVYNQAYNIGLNLQQEQYEKNKDLPQKERKWKKSSELDHAIKQCL  60
            +YPTKEQ+ KLQHCFFVYNQAYNIGLNL QEQYE NKDLP KERKWKKSSELDHAIK+ L
Sbjct  11   LYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKKSSELDHAIKHHL  70

Query  61   RARDLPFSSVIAQQSRMNVERAFKDAFKVKNRGFPKFKNSKFAKQSFSWNNQGFSLKESA  120
             AR+L+FSSVIAQQ+RMNVERA+KDAFKVKNRGFPKFKNSKFAKQSF WNNQGFS+KES 
Sbjct  71   NARGLSFSSVIAQQARMNVERALKDAFKVKNRGFPKFKNSKFAKQSFLWNNQGFSIKESD  130

Query  121  DERFKIFTLMKMPLLLRMHRDFPPNAKIKQITISCSHRKYFVSFSVEYEQDTTTIKNPKD  180
            +ERFKIFTLMKMPL++RMHR+FPPN+K+KQI ISCSHRKYFVSFSVEYEQD T IKNPKD
Sbjct  131  EERFKIFTLMKMPLMMRMHRNFPPNSKVKQIVISCSHRKYFVSFSVEYEQDITPIKNPKD  190

Query  181  CVGIDLNVFDIACSCGVNNPEKLTDFKRYLLDMEELLGIKLDAKTHATQLIPTYsklhsl  240
            CVG+DLN +DIACSC +NN EKLTDFK+Y  DM ELLGI +D   ++ +LIPTYSKL SL
Sbjct  191  CVGLDLNTLDIACSCEINNHEKLTDFKQYQTDMKELLGIEIDEELDTKRLIPTYSKLYSL  250

Query  241  kkyskkskrlqkkqsrrvlkSKQNKTKLGGNFYQTQKRLNQAFDKSSHQKTDRYHKITSE  300
            KKYS K KRLQ+KQSRRVLKSKQNKTKLGGNFY+TQK+LNQAFDKSSHQKTDRYHKITSE
Sbjct  251  KKYSEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQKTDRYHKITSE  310

Query  301  LSKQFELIAVEDLQVKNMTKRAKLKNVKQKRGLNKSILNASFYQIISFLDYKQQHNGKLL  360
            LSKQFELI VEDLQVKNMTKRAKLKNVKQK GLN+SILNASFYQIISFLDYKQQHNGKLL
Sbjct  311  LSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNASFYQIISFLDYKQQHNGKLL  370

Query  361  VKVPPQYTSKTCCNCGSINPKLKLNHRQYLCPDCGYKEHRDINAANNILNKGLSLFRAGN  420
            VKVPPQYTSKTC  CG+IN KLKLNHRQY C +CGY+EHRDINAANNIL+KGLSLF  GN
Sbjct  371  VKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGLSLFGVGN  430

Query  421  VLADYKEQSLSC  432
            + AD+KEQSLSC
Sbjct  431  IHADFKEQSLSC  442

19) HPPC_04955 in NC_014555


> AY330636|5|G5|37811782|AAR03857.1|Helicobacter_pylori_Ca52|+|3179..4507|tnpB|-|transposase 
B-like protein
Length=442

 Score =  554 bits (2090),  Expect = 4e-159, Method: Compositional matrix adjust.
 Identities = 365/432 (85%), Positives = 398/432 (93%), Gaps = 0/432 (0%)

Query  1    MYPTKEQESKLQHCFFVYNQAYNIGLNLQQEQYEKNKDLPPKERKWKKSSELDHAIKQCL  60
            +YPTKEQ+ KLQHCFFVYNQAYNIGLNL QEQYE NKDLPPKERKWKKSSELDHAIK+ L
Sbjct  11   LYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKKSSELDHAIKHHL  70

Query  61   RARDLPFSSVIAKQSRMNVERAFKDAFKVKNRGFPKFKNSKFAKQSFSWNNQGFSFKESA  120
             AR+L+FSSVIA+Q+RMNVERA+KDAFKVKNRGFPKFKNSKFAKQSF WNNQGFS+KES 
Sbjct  71   NARGLSFSSVIAQQARMNVERALKDAFKVKNRGFPKFKNSKFAKQSFLWNNQGFSIKESD  130

Query  121  DERFKIFTLMKMPLLLRMHRDPPPNAKIKQITISCSHRKYFVSFSVEYEQNIATIKNPKD  180
            +ERFKIFTLMKMPL++RMHR+ PPN+K+KQI ISCSHRKYFVSFSVEYEQ+I+ IKNPKD
Sbjct  131  EERFKIFTLMKMPLMMRMHRNFPPNSKVKQIVISCSHRKYFVSFSVEYEQDITPIKNPKD  190

Query  181  CVGLDLNILDIACSCGVNNPEKLTDFKRYLLDMEELLGIKLDAKTHATQLIPTYsklhsl  240
            CVGLDLN LDIACSC +NN EKLTDFK+Y  DM ELLGI +D   ++ +LIPTYSKL SL
Sbjct  191  CVGLDLNTLDIACSCEINNHEKLTDFKQYQTDMKELLGIEIDEELDTKRLIPTYSKLYSL  250

Query  241  kkyskkskklqrkqsrrvlkSKQNKTKLGGNFYQTQKRLNQAFDKSSHQKTDRYHKITSE  300
            KKYS K K+LQRKQSRRVLKSKQNKTKLGGNFY+TQK+LNQAFDKSSHQKTDRYHKITSE
Sbjct  251  KKYSEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQKTDRYHKITSE  310

Query  301  LSKQFELIAVEDLQVKNMTKRAKLKNVKQKSGLNRSILNTSFYQIIFFLDYKQQHNGKLL  360
            LSKQFELI VEDLQVKNMTKRAKLKNVKQKSGLN+SILN+SFYQII FLDYKQQHNGKLL
Sbjct  311  LSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNASFYQIISFLDYKQQHNGKLL  370

Query  361  VKVPPQYTSKTCYNCGSINPKLKLNHRQYLCSDCGYKEHRDINAANNILNKGLSLFRAGN  420
            VKVPPQYTSKTC  CG+IN KLKLNHRQY C +CGY+EHRDINAANNIL+KGLSLF  GN
Sbjct  371  VKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGLSLFGVGN  430

Query  421  VLADFKEQSLSC  432
            + ADFKEQSLSC
Sbjct  431  IHADFKEQSLSC  442

20) HCD_01015 in NC_017735


> AY330636|5|G5|37811782|AAR03857.1|Helicobacter_pylori_Ca52|+|3179..4507|tnpB|-|transposase 
B-like protein
Length=442

 Score =  542 bits (2046),  Expect = 1e-155, Method: Compositional matrix adjust.
 Identities = 345/432 (80%), Positives = 390/432 (91%), Gaps = 2/432 (0%)

Query  1    MYPTKEQQTKLQHSFFVYNQAYNICLNLQQEQYEKNKDLPTKQRKWQKSSELDSAIKHHL  60
            +YPTKEQQ KLQH FFVYNQAYNI LNL QEQYE NKDLP K+RKW+KSSELD AIKHHL
Sbjct  11   LYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKKSSELDHAIKHHL  70

Query  61   KARNLSFSSVVAQQSRMNAERALRDAFKVKNRGFPKFKNSKFAKQSFTWNNQGFSIKDFN  120
            +AR LSFSSV+AQQ+RMN ERAL+DAFKVKNRGFPKFKNSKFAKQSF WNNQGFSIK+ +
Sbjct  71   NARGLSFSSVIAQQARMNVERALKDAFKVKNRGFPKFKNSKFAKQSFLWNNQGFSIKESD  130

Query  121  E-RFKMFNLMKMPLKMRMHRDLPLNAKIKQIVVSCSHQKYFVSFSIEYEKELNTIKEPRN  179
            E RFK+F LMKMPL MRMHR++P N+K+KQIV+SCSH+KYFVSFS+EYE+++  IK+P++
Sbjct  131  EERFKIFTLMKMPLMMRMHRNFPPNSKVKQIVISCSHRKYFVSFSVEYEQDITPIKNPKD  190

Query  180  CVGVDLNIYDIALSVDLKEYEKLTDLEQYQKDMKEL-GLKVDENINLKRLIPTYSKLHSF  238
            CVG+DLN  DIA S ++++ EKLTD+ QYQ DMKEL G+ +DE+++ KRLIPTYSKL S+
Sbjct  191  CVGLDLNTLDIACSCEINNHEKLTDFKQYQTDMKELLGIEIDEELDTKRLIPTYSKLYSL  250

Query  239  KKYSKEFKRLQRKQSRRVLKSKQNKIKLGGNFYKTQKKLNKAFDKSSYQKLDRYHKITSE  298
            KKYS  FKRLQRKQSRRVLKSKQNK KLGGNFYKTQKKLN+AFDKSS QK DRYHKITSE
Sbjct  251  KKYSEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQKTDRYHKITSE  310

Query  299  LSKQFELIVVEDLQIKNMTKRAKLKNVKQKSGLNKSILNTSFYQIISFLDYKQQHNGKLL  358
            LSKQFELIVVEDLQ+KNMTKRAKLKNVKQKSGLN+SILN+SFYQIISFLDYKQQHNGKLL
Sbjct  311  LSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNASFYQIISFLDYKQQHNGKLL  370

Query  359  VKAPPQYTSKTCHSCGQINHELKLNHREYLCQNCGYIEHRDINAASNIlskglsllglgn  418
            VK PPQYTSKTCH CG+INH LKLNHR+Y C +CGY EHRDINAA+NILSKGLSL+G+GN
Sbjct  371  VKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGLSLFGVGN  430

Query  419  slADFKEQSLSY  430
              ADFKEQSLS 
Sbjct  431  IHADFKEQSLSC  442

21) HCD_01955 in NC_017735


> AY330636|5|G5|37811782|AAR03857.1|Helicobacter_pylori_Ca52|+|3179..4507|tnpB|-|transposase 
B-like protein
Length=442

 Score =  542 bits (2046),  Expect = 1e-155, Method: Compositional matrix adjust.
 Identities = 345/432 (80%), Positives = 390/432 (91%), Gaps = 2/432 (0%)

Query  1    MYPTKEQQTKLQHSFFVYNQAYNICLNLQQEQYEKNKDLPTKQRKWQKSSELDSAIKHHL  60
            +YPTKEQQ KLQH FFVYNQAYNI LNL QEQYE NKDLP K+RKW+KSSELD AIKHHL
Sbjct  11   LYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKKSSELDHAIKHHL  70

Query  61   KARNLSFSSVVAQQSRMNAERALRDAFKVKNRGFPKFKNSKFAKQSFTWNNQGFSIKDFN  120
            +AR LSFSSV+AQQ+RMN ERAL+DAFKVKNRGFPKFKNSKFAKQSF WNNQGFSIK+ +
Sbjct  71   NARGLSFSSVIAQQARMNVERALKDAFKVKNRGFPKFKNSKFAKQSFLWNNQGFSIKESD  130

Query  121  E-RFKMFNLMKMPLKMRMHRDLPLNAKIKQIVVSCSHQKYFVSFSIEYEKELNTIKEPRN  179
            E RFK+F LMKMPL MRMHR++P N+K+KQIV+SCSH+KYFVSFS+EYE+++  IK+P++
Sbjct  131  EERFKIFTLMKMPLMMRMHRNFPPNSKVKQIVISCSHRKYFVSFSVEYEQDITPIKNPKD  190

Query  180  CVGVDLNIYDIALSVDLKEYEKLTDLEQYQKDMKEL-GLKVDENINLKRLIPTYSKLHSF  238
            CVG+DLN  DIA S ++++ EKLTD+ QYQ DMKEL G+ +DE+++ KRLIPTYSKL S+
Sbjct  191  CVGLDLNTLDIACSCEINNHEKLTDFKQYQTDMKELLGIEIDEELDTKRLIPTYSKLYSL  250

Query  239  KKYSKEFKRLQRKQSRRVLKSKQNKIKLGGNFYKTQKKLNKAFDKSSYQKLDRYHKITSE  298
            KKYS  FKRLQRKQSRRVLKSKQNK KLGGNFYKTQKKLN+AFDKSS QK DRYHKITSE
Sbjct  251  KKYSEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQKTDRYHKITSE  310

Query  299  LSKQFELIVVEDLQIKNMTKRAKLKNVKQKSGLNKSILNTSFYQIISFLDYKQQHNGKLL  358
            LSKQFELIVVEDLQ+KNMTKRAKLKNVKQKSGLN+SILN+SFYQIISFLDYKQQHNGKLL
Sbjct  311  LSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNASFYQIISFLDYKQQHNGKLL  370

Query  359  VKAPPQYTSKTCHSCGQINHELKLNHREYLCQNCGYIEHRDINAASNIlskglsllglgn  418
            VK PPQYTSKTCH CG+INH LKLNHR+Y C +CGY EHRDINAA+NILSKGLSL+G+GN
Sbjct  371  VKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGLSLFGVGN  430

Query  419  slADFKEQSLSY  430
              ADFKEQSLS 
Sbjct  431  IHADFKEQSLSC  442

22) HCD_02215 in NC_017735


> AY330636|5|G5|37811782|AAR03857.1|Helicobacter_pylori_Ca52|+|3179..4507|tnpB|-|transposase 
B-like protein
Length=442

 Score =  542 bits (2046),  Expect = 1e-155, Method: Compositional matrix adjust.
 Identities = 345/432 (80%), Positives = 390/432 (91%), Gaps = 2/432 (0%)

Query  1    MYPTKEQQTKLQHSFFVYNQAYNICLNLQQEQYEKNKDLPTKQRKWQKSSELDSAIKHHL  60
            +YPTKEQQ KLQH FFVYNQAYNI LNL QEQYE NKDLP K+RKW+KSSELD AIKHHL
Sbjct  11   LYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKKSSELDHAIKHHL  70

Query  61   KARNLSFSSVVAQQSRMNAERALRDAFKVKNRGFPKFKNSKFAKQSFTWNNQGFSIKDFN  120
            +AR LSFSSV+AQQ+RMN ERAL+DAFKVKNRGFPKFKNSKFAKQSF WNNQGFSIK+ +
Sbjct  71   NARGLSFSSVIAQQARMNVERALKDAFKVKNRGFPKFKNSKFAKQSFLWNNQGFSIKESD  130

Query  121  E-RFKMFNLMKMPLKMRMHRDLPLNAKIKQIVVSCSHQKYFVSFSIEYEKELNTIKEPRN  179
            E RFK+F LMKMPL MRMHR++P N+K+KQIV+SCSH+KYFVSFS+EYE+++  IK+P++
Sbjct  131  EERFKIFTLMKMPLMMRMHRNFPPNSKVKQIVISCSHRKYFVSFSVEYEQDITPIKNPKD  190

Query  180  CVGVDLNIYDIALSVDLKEYEKLTDLEQYQKDMKEL-GLKVDENINLKRLIPTYSKLHSF  238
            CVG+DLN  DIA S ++++ EKLTD+ QYQ DMKEL G+ +DE+++ KRLIPTYSKL S+
Sbjct  191  CVGLDLNTLDIACSCEINNHEKLTDFKQYQTDMKELLGIEIDEELDTKRLIPTYSKLYSL  250

Query  239  KKYSKEFKRLQRKQSRRVLKSKQNKIKLGGNFYKTQKKLNKAFDKSSYQKLDRYHKITSE  298
            KKYS  FKRLQRKQSRRVLKSKQNK KLGGNFYKTQKKLN+AFDKSS QK DRYHKITSE
Sbjct  251  KKYSEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQKTDRYHKITSE  310

Query  299  LSKQFELIVVEDLQIKNMTKRAKLKNVKQKSGLNKSILNTSFYQIISFLDYKQQHNGKLL  358
            LSKQFELIVVEDLQ+KNMTKRAKLKNVKQKSGLN+SILN+SFYQIISFLDYKQQHNGKLL
Sbjct  311  LSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNASFYQIISFLDYKQQHNGKLL  370

Query  359  VKAPPQYTSKTCHSCGQINHELKLNHREYLCQNCGYIEHRDINAASNIlskglsllglgn  418
            VK PPQYTSKTCH CG+INH LKLNHR+Y C +CGY EHRDINAA+NILSKGLSL+G+GN
Sbjct  371  VKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGLSLFGVGN  430

Query  419  slADFKEQSLSY  430
              ADFKEQSLS 
Sbjct  431  IHADFKEQSLSC  442

23) HCD_02410 in NC_017735


> AY330636|5|G5|37811782|AAR03857.1|Helicobacter_pylori_Ca52|+|3179..4507|tnpB|-|transposase 
B-like protein
Length=442

 Score =  542 bits (2046),  Expect = 1e-155, Method: Compositional matrix adjust.
 Identities = 345/432 (80%), Positives = 390/432 (91%), Gaps = 2/432 (0%)

Query  1    MYPTKEQQTKLQHSFFVYNQAYNICLNLQQEQYEKNKDLPTKQRKWQKSSELDSAIKHHL  60
            +YPTKEQQ KLQH FFVYNQAYNI LNL QEQYE NKDLP K+RKW+KSSELD AIKHHL
Sbjct  11   LYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKKSSELDHAIKHHL  70

Query  61   KARNLSFSSVVAQQSRMNAERALRDAFKVKNRGFPKFKNSKFAKQSFTWNNQGFSIKDFN  120
            +AR LSFSSV+AQQ+RMN ERAL+DAFKVKNRGFPKFKNSKFAKQSF WNNQGFSIK+ +
Sbjct  71   NARGLSFSSVIAQQARMNVERALKDAFKVKNRGFPKFKNSKFAKQSFLWNNQGFSIKESD  130

Query  121  E-RFKMFNLMKMPLKMRMHRDLPLNAKIKQIVVSCSHQKYFVSFSIEYEKELNTIKEPRN  179
            E RFK+F LMKMPL MRMHR++P N+K+KQIV+SCSH+KYFVSFS+EYE+++  IK+P++
Sbjct  131  EERFKIFTLMKMPLMMRMHRNFPPNSKVKQIVISCSHRKYFVSFSVEYEQDITPIKNPKD  190

Query  180  CVGVDLNIYDIALSVDLKEYEKLTDLEQYQKDMKEL-GLKVDENINLKRLIPTYSKLHSF  238
            CVG+DLN  DIA S ++++ EKLTD+ QYQ DMKEL G+ +DE+++ KRLIPTYSKL S+
Sbjct  191  CVGLDLNTLDIACSCEINNHEKLTDFKQYQTDMKELLGIEIDEELDTKRLIPTYSKLYSL  250

Query  239  KKYSKEFKRLQRKQSRRVLKSKQNKIKLGGNFYKTQKKLNKAFDKSSYQKLDRYHKITSE  298
            KKYS  FKRLQRKQSRRVLKSKQNK KLGGNFYKTQKKLN+AFDKSS QK DRYHKITSE
Sbjct  251  KKYSEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQKTDRYHKITSE  310

Query  299  LSKQFELIVVEDLQIKNMTKRAKLKNVKQKSGLNKSILNTSFYQIISFLDYKQQHNGKLL  358
            LSKQFELIVVEDLQ+KNMTKRAKLKNVKQKSGLN+SILN+SFYQIISFLDYKQQHNGKLL
Sbjct  311  LSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNASFYQIISFLDYKQQHNGKLL  370

Query  359  VKAPPQYTSKTCHSCGQINHELKLNHREYLCQNCGYIEHRDINAASNIlskglsllglgn  418
            VK PPQYTSKTCH CG+INH LKLNHR+Y C +CGY EHRDINAA+NILSKGLSL+G+GN
Sbjct  371  VKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGLSLFGVGN  430

Query  419  slADFKEQSLSY  430
              ADFKEQSLS 
Sbjct  431  IHADFKEQSLSC  442

24) HCD_02820 in NC_017735


> AY330636|5|G5|37811782|AAR03857.1|Helicobacter_pylori_Ca52|+|3179..4507|tnpB|-|transposase 
B-like protein
Length=442

 Score =  542 bits (2046),  Expect = 1e-155, Method: Compositional matrix adjust.
 Identities = 345/432 (80%), Positives = 390/432 (91%), Gaps = 2/432 (0%)

Query  1    MYPTKEQQTKLQHSFFVYNQAYNICLNLQQEQYEKNKDLPTKQRKWQKSSELDSAIKHHL  60
            +YPTKEQQ KLQH FFVYNQAYNI LNL QEQYE NKDLP K+RKW+KSSELD AIKHHL
Sbjct  11   LYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKKSSELDHAIKHHL  70

Query  61   KARNLSFSSVVAQQSRMNAERALRDAFKVKNRGFPKFKNSKFAKQSFTWNNQGFSIKDFN  120
            +AR LSFSSV+AQQ+RMN ERAL+DAFKVKNRGFPKFKNSKFAKQSF WNNQGFSIK+ +
Sbjct  71   NARGLSFSSVIAQQARMNVERALKDAFKVKNRGFPKFKNSKFAKQSFLWNNQGFSIKESD  130

Query  121  E-RFKMFNLMKMPLKMRMHRDLPLNAKIKQIVVSCSHQKYFVSFSIEYEKELNTIKEPRN  179
            E RFK+F LMKMPL MRMHR++P N+K+KQIV+SCSH+KYFVSFS+EYE+++  IK+P++
Sbjct  131  EERFKIFTLMKMPLMMRMHRNFPPNSKVKQIVISCSHRKYFVSFSVEYEQDITPIKNPKD  190

Query  180  CVGVDLNIYDIALSVDLKEYEKLTDLEQYQKDMKEL-GLKVDENINLKRLIPTYSKLHSF  238
            CVG+DLN  DIA S ++++ EKLTD+ QYQ DMKEL G+ +DE+++ KRLIPTYSKL S+
Sbjct  191  CVGLDLNTLDIACSCEINNHEKLTDFKQYQTDMKELLGIEIDEELDTKRLIPTYSKLYSL  250

Query  239  KKYSKEFKRLQRKQSRRVLKSKQNKIKLGGNFYKTQKKLNKAFDKSSYQKLDRYHKITSE  298
            KKYS  FKRLQRKQSRRVLKSKQNK KLGGNFYKTQKKLN+AFDKSS QK DRYHKITSE
Sbjct  251  KKYSEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQKTDRYHKITSE  310

Query  299  LSKQFELIVVEDLQIKNMTKRAKLKNVKQKSGLNKSILNTSFYQIISFLDYKQQHNGKLL  358
            LSKQFELIVVEDLQ+KNMTKRAKLKNVKQKSGLN+SILN+SFYQIISFLDYKQQHNGKLL
Sbjct  311  LSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNASFYQIISFLDYKQQHNGKLL  370

Query  359  VKAPPQYTSKTCHSCGQINHELKLNHREYLCQNCGYIEHRDINAASNIlskglsllglgn  418
            VK PPQYTSKTCH CG+INH LKLNHR+Y C +CGY EHRDINAA+NILSKGLSL+G+GN
Sbjct  371  VKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGLSLFGVGN  430

Query  419  slADFKEQSLSY  430
              ADFKEQSLS 
Sbjct  431  IHADFKEQSLSC  442

25) HCD_02975 in NC_017735


> AY330636|5|G5|37811782|AAR03857.1|Helicobacter_pylori_Ca52|+|3179..4507|tnpB|-|transposase 
B-like protein
Length=442

 Score =  542 bits (2046),  Expect = 1e-155, Method: Compositional matrix adjust.
 Identities = 345/432 (80%), Positives = 390/432 (91%), Gaps = 2/432 (0%)

Query  1    MYPTKEQQTKLQHSFFVYNQAYNICLNLQQEQYEKNKDLPTKQRKWQKSSELDSAIKHHL  60
            +YPTKEQQ KLQH FFVYNQAYNI LNL QEQYE NKDLP K+RKW+KSSELD AIKHHL
Sbjct  11   LYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKKSSELDHAIKHHL  70

Query  61   KARNLSFSSVVAQQSRMNAERALRDAFKVKNRGFPKFKNSKFAKQSFTWNNQGFSIKDFN  120
            +AR LSFSSV+AQQ+RMN ERAL+DAFKVKNRGFPKFKNSKFAKQSF WNNQGFSIK+ +
Sbjct  71   NARGLSFSSVIAQQARMNVERALKDAFKVKNRGFPKFKNSKFAKQSFLWNNQGFSIKESD  130

Query  121  E-RFKMFNLMKMPLKMRMHRDLPLNAKIKQIVVSCSHQKYFVSFSIEYEKELNTIKEPRN  179
            E RFK+F LMKMPL MRMHR++P N+K+KQIV+SCSH+KYFVSFS+EYE+++  IK+P++
Sbjct  131  EERFKIFTLMKMPLMMRMHRNFPPNSKVKQIVISCSHRKYFVSFSVEYEQDITPIKNPKD  190

Query  180  CVGVDLNIYDIALSVDLKEYEKLTDLEQYQKDMKEL-GLKVDENINLKRLIPTYSKLHSF  238
            CVG+DLN  DIA S ++++ EKLTD+ QYQ DMKEL G+ +DE+++ KRLIPTYSKL S+
Sbjct  191  CVGLDLNTLDIACSCEINNHEKLTDFKQYQTDMKELLGIEIDEELDTKRLIPTYSKLYSL  250

Query  239  KKYSKEFKRLQRKQSRRVLKSKQNKIKLGGNFYKTQKKLNKAFDKSSYQKLDRYHKITSE  298
            KKYS  FKRLQRKQSRRVLKSKQNK KLGGNFYKTQKKLN+AFDKSS QK DRYHKITSE
Sbjct  251  KKYSEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQKTDRYHKITSE  310

Query  299  LSKQFELIVVEDLQIKNMTKRAKLKNVKQKSGLNKSILNTSFYQIISFLDYKQQHNGKLL  358
            LSKQFELIVVEDLQ+KNMTKRAKLKNVKQKSGLN+SILN+SFYQIISFLDYKQQHNGKLL
Sbjct  311  LSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNASFYQIISFLDYKQQHNGKLL  370

Query  359  VKAPPQYTSKTCHSCGQINHELKLNHREYLCQNCGYIEHRDINAASNIlskglsllglgn  418
            VK PPQYTSKTCH CG+INH LKLNHR+Y C +CGY EHRDINAA+NILSKGLSL+G+GN
Sbjct  371  VKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGLSLFGVGN  430

Query  419  slADFKEQSLSY  430
              ADFKEQSLS 
Sbjct  431  IHADFKEQSLSC  442

26) HCD_05155 in NC_017735


> AY330636|5|G5|37811782|AAR03857.1|Helicobacter_pylori_Ca52|+|3179..4507|tnpB|-|transposase 
B-like protein
Length=442

 Score =  542 bits (2046),  Expect = 1e-155, Method: Compositional matrix adjust.
 Identities = 345/432 (80%), Positives = 390/432 (91%), Gaps = 2/432 (0%)

Query  1    MYPTKEQQTKLQHSFFVYNQAYNICLNLQQEQYEKNKDLPTKQRKWQKSSELDSAIKHHL  60
            +YPTKEQQ KLQH FFVYNQAYNI LNL QEQYE NKDLP K+RKW+KSSELD AIKHHL
Sbjct  11   LYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKKSSELDHAIKHHL  70

Query  61   KARNLSFSSVVAQQSRMNAERALRDAFKVKNRGFPKFKNSKFAKQSFTWNNQGFSIKDFN  120
            +AR LSFSSV+AQQ+RMN ERAL+DAFKVKNRGFPKFKNSKFAKQSF WNNQGFSIK+ +
Sbjct  71   NARGLSFSSVIAQQARMNVERALKDAFKVKNRGFPKFKNSKFAKQSFLWNNQGFSIKESD  130

Query  121  E-RFKMFNLMKMPLKMRMHRDLPLNAKIKQIVVSCSHQKYFVSFSIEYEKELNTIKEPRN  179
            E RFK+F LMKMPL MRMHR++P N+K+KQIV+SCSH+KYFVSFS+EYE+++  IK+P++
Sbjct  131  EERFKIFTLMKMPLMMRMHRNFPPNSKVKQIVISCSHRKYFVSFSVEYEQDITPIKNPKD  190

Query  180  CVGVDLNIYDIALSVDLKEYEKLTDLEQYQKDMKEL-GLKVDENINLKRLIPTYSKLHSF  238
            CVG+DLN  DIA S ++++ EKLTD+ QYQ DMKEL G+ +DE+++ KRLIPTYSKL S+
Sbjct  191  CVGLDLNTLDIACSCEINNHEKLTDFKQYQTDMKELLGIEIDEELDTKRLIPTYSKLYSL  250

Query  239  KKYSKEFKRLQRKQSRRVLKSKQNKIKLGGNFYKTQKKLNKAFDKSSYQKLDRYHKITSE  298
            KKYS  FKRLQRKQSRRVLKSKQNK KLGGNFYKTQKKLN+AFDKSS QK DRYHKITSE
Sbjct  251  KKYSEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQKTDRYHKITSE  310

Query  299  LSKQFELIVVEDLQIKNMTKRAKLKNVKQKSGLNKSILNTSFYQIISFLDYKQQHNGKLL  358
            LSKQFELIVVEDLQ+KNMTKRAKLKNVKQKSGLN+SILN+SFYQIISFLDYKQQHNGKLL
Sbjct  311  LSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNASFYQIISFLDYKQQHNGKLL  370

Query  359  VKAPPQYTSKTCHSCGQINHELKLNHREYLCQNCGYIEHRDINAASNIlskglsllglgn  418
            VK PPQYTSKTCH CG+INH LKLNHR+Y C +CGY EHRDINAA+NILSKGLSL+G+GN
Sbjct  371  VKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGLSLFGVGN  430

Query  419  slADFKEQSLSY  430
              ADFKEQSLS 
Sbjct  431  IHADFKEQSLSC  442

27) HCD_05185 in NC_017735


> AY330636|5|G5|37811782|AAR03857.1|Helicobacter_pylori_Ca52|+|3179..4507|tnpB|-|transposase 
B-like protein
Length=442

 Score =  542 bits (2046),  Expect = 1e-155, Method: Compositional matrix adjust.
 Identities = 345/432 (80%), Positives = 390/432 (91%), Gaps = 2/432 (0%)

Query  1    MYPTKEQQTKLQHSFFVYNQAYNICLNLQQEQYEKNKDLPTKQRKWQKSSELDSAIKHHL  60
            +YPTKEQQ KLQH FFVYNQAYNI LNL QEQYE NKDLP K+RKW+KSSELD AIKHHL
Sbjct  11   LYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKKSSELDHAIKHHL  70

Query  61   KARNLSFSSVVAQQSRMNAERALRDAFKVKNRGFPKFKNSKFAKQSFTWNNQGFSIKDFN  120
            +AR LSFSSV+AQQ+RMN ERAL+DAFKVKNRGFPKFKNSKFAKQSF WNNQGFSIK+ +
Sbjct  71   NARGLSFSSVIAQQARMNVERALKDAFKVKNRGFPKFKNSKFAKQSFLWNNQGFSIKESD  130

Query  121  E-RFKMFNLMKMPLKMRMHRDLPLNAKIKQIVVSCSHQKYFVSFSIEYEKELNTIKEPRN  179
            E RFK+F LMKMPL MRMHR++P N+K+KQIV+SCSH+KYFVSFS+EYE+++  IK+P++
Sbjct  131  EERFKIFTLMKMPLMMRMHRNFPPNSKVKQIVISCSHRKYFVSFSVEYEQDITPIKNPKD  190

Query  180  CVGVDLNIYDIALSVDLKEYEKLTDLEQYQKDMKEL-GLKVDENINLKRLIPTYSKLHSF  238
            CVG+DLN  DIA S ++++ EKLTD+ QYQ DMKEL G+ +DE+++ KRLIPTYSKL S+
Sbjct  191  CVGLDLNTLDIACSCEINNHEKLTDFKQYQTDMKELLGIEIDEELDTKRLIPTYSKLYSL  250

Query  239  KKYSKEFKRLQRKQSRRVLKSKQNKIKLGGNFYKTQKKLNKAFDKSSYQKLDRYHKITSE  298
            KKYS  FKRLQRKQSRRVLKSKQNK KLGGNFYKTQKKLN+AFDKSS QK DRYHKITSE
Sbjct  251  KKYSEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQKTDRYHKITSE  310

Query  299  LSKQFELIVVEDLQIKNMTKRAKLKNVKQKSGLNKSILNTSFYQIISFLDYKQQHNGKLL  358
            LSKQFELIVVEDLQ+KNMTKRAKLKNVKQKSGLN+SILN+SFYQIISFLDYKQQHNGKLL
Sbjct  311  LSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNASFYQIISFLDYKQQHNGKLL  370

Query  359  VKAPPQYTSKTCHSCGQINHELKLNHREYLCQNCGYIEHRDINAASNIlskglsllglgn  418
            VK PPQYTSKTCH CG+INH LKLNHR+Y C +CGY EHRDINAA+NILSKGLSL+G+GN
Sbjct  371  VKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGLSLFGVGN  430

Query  419  slADFKEQSLSY  430
              ADFKEQSLS 
Sbjct  431  IHADFKEQSLSC  442

28) HCD_06180 in NC_017735


> AY330636|5|G5|37811782|AAR03857.1|Helicobacter_pylori_Ca52|+|3179..4507|tnpB|-|transposase 
B-like protein
Length=442

 Score =  542 bits (2046),  Expect = 1e-155, Method: Compositional matrix adjust.
 Identities = 345/432 (80%), Positives = 390/432 (91%), Gaps = 2/432 (0%)

Query  1    MYPTKEQQTKLQHSFFVYNQAYNICLNLQQEQYEKNKDLPTKQRKWQKSSELDSAIKHHL  60
            +YPTKEQQ KLQH FFVYNQAYNI LNL QEQYE NKDLP K+RKW+KSSELD AIKHHL
Sbjct  11   LYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKKSSELDHAIKHHL  70

Query  61   KARNLSFSSVVAQQSRMNAERALRDAFKVKNRGFPKFKNSKFAKQSFTWNNQGFSIKDFN  120
            +AR LSFSSV+AQQ+RMN ERAL+DAFKVKNRGFPKFKNSKFAKQSF WNNQGFSIK+ +
Sbjct  71   NARGLSFSSVIAQQARMNVERALKDAFKVKNRGFPKFKNSKFAKQSFLWNNQGFSIKESD  130

Query  121  E-RFKMFNLMKMPLKMRMHRDLPLNAKIKQIVVSCSHQKYFVSFSIEYEKELNTIKEPRN  179
            E RFK+F LMKMPL MRMHR++P N+K+KQIV+SCSH+KYFVSFS+EYE+++  IK+P++
Sbjct  131  EERFKIFTLMKMPLMMRMHRNFPPNSKVKQIVISCSHRKYFVSFSVEYEQDITPIKNPKD  190

Query  180  CVGVDLNIYDIALSVDLKEYEKLTDLEQYQKDMKEL-GLKVDENINLKRLIPTYSKLHSF  238
            CVG+DLN  DIA S ++++ EKLTD+ QYQ DMKEL G+ +DE+++ KRLIPTYSKL S+
Sbjct  191  CVGLDLNTLDIACSCEINNHEKLTDFKQYQTDMKELLGIEIDEELDTKRLIPTYSKLYSL  250

Query  239  KKYSKEFKRLQRKQSRRVLKSKQNKIKLGGNFYKTQKKLNKAFDKSSYQKLDRYHKITSE  298
            KKYS  FKRLQRKQSRRVLKSKQNK KLGGNFYKTQKKLN+AFDKSS QK DRYHKITSE
Sbjct  251  KKYSEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQKTDRYHKITSE  310

Query  299  LSKQFELIVVEDLQIKNMTKRAKLKNVKQKSGLNKSILNTSFYQIISFLDYKQQHNGKLL  358
            LSKQFELIVVEDLQ+KNMTKRAKLKNVKQKSGLN+SILN+SFYQIISFLDYKQQHNGKLL
Sbjct  311  LSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNASFYQIISFLDYKQQHNGKLL  370

Query  359  VKAPPQYTSKTCHSCGQINHELKLNHREYLCQNCGYIEHRDINAASNIlskglsllglgn  418
            VK PPQYTSKTCH CG+INH LKLNHR+Y C +CGY EHRDINAA+NILSKGLSL+G+GN
Sbjct  371  VKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGLSLFGVGN  430

Query  419  slADFKEQSLSY  430
              ADFKEQSLS 
Sbjct  431  IHADFKEQSLSC  442

29) HCD_07460 in NC_017735


> AY330636|5|G5|37811782|AAR03857.1|Helicobacter_pylori_Ca52|+|3179..4507|tnpB|-|transposase 
B-like protein
Length=442

 Score =  542 bits (2046),  Expect = 1e-155, Method: Compositional matrix adjust.
 Identities = 345/432 (80%), Positives = 390/432 (91%), Gaps = 2/432 (0%)

Query  1    MYPTKEQQTKLQHSFFVYNQAYNICLNLQQEQYEKNKDLPTKQRKWQKSSELDSAIKHHL  60
            +YPTKEQQ KLQH FFVYNQAYNI LNL QEQYE NKDLP K+RKW+KSSELD AIKHHL
Sbjct  11   LYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKKSSELDHAIKHHL  70

Query  61   KARNLSFSSVVAQQSRMNAERALRDAFKVKNRGFPKFKNSKFAKQSFTWNNQGFSIKDFN  120
            +AR LSFSSV+AQQ+RMN ERAL+DAFKVKNRGFPKFKNSKFAKQSF WNNQGFSIK+ +
Sbjct  71   NARGLSFSSVIAQQARMNVERALKDAFKVKNRGFPKFKNSKFAKQSFLWNNQGFSIKESD  130

Query  121  E-RFKMFNLMKMPLKMRMHRDLPLNAKIKQIVVSCSHQKYFVSFSIEYEKELNTIKEPRN  179
            E RFK+F LMKMPL MRMHR++P N+K+KQIV+SCSH+KYFVSFS+EYE+++  IK+P++
Sbjct  131  EERFKIFTLMKMPLMMRMHRNFPPNSKVKQIVISCSHRKYFVSFSVEYEQDITPIKNPKD  190

Query  180  CVGVDLNIYDIALSVDLKEYEKLTDLEQYQKDMKEL-GLKVDENINLKRLIPTYSKLHSF  238
            CVG+DLN  DIA S ++++ EKLTD+ QYQ DMKEL G+ +DE+++ KRLIPTYSKL S+
Sbjct  191  CVGLDLNTLDIACSCEINNHEKLTDFKQYQTDMKELLGIEIDEELDTKRLIPTYSKLYSL  250

Query  239  KKYSKEFKRLQRKQSRRVLKSKQNKIKLGGNFYKTQKKLNKAFDKSSYQKLDRYHKITSE  298
            KKYS  FKRLQRKQSRRVLKSKQNK KLGGNFYKTQKKLN+AFDKSS QK DRYHKITSE
Sbjct  251  KKYSEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQKTDRYHKITSE  310

Query  299  LSKQFELIVVEDLQIKNMTKRAKLKNVKQKSGLNKSILNTSFYQIISFLDYKQQHNGKLL  358
            LSKQFELIVVEDLQ+KNMTKRAKLKNVKQKSGLN+SILN+SFYQIISFLDYKQQHNGKLL
Sbjct  311  LSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNASFYQIISFLDYKQQHNGKLL  370

Query  359  VKAPPQYTSKTCHSCGQINHELKLNHREYLCQNCGYIEHRDINAASNIlskglsllglgn  418
            VK PPQYTSKTCH CG+INH LKLNHR+Y C +CGY EHRDINAA+NILSKGLSL+G+GN
Sbjct  371  VKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGLSLFGVGN  430

Query  419  slADFKEQSLSY  430
              ADFKEQSLS 
Sbjct  431  IHADFKEQSLSC  442

30) HCD_07770 in NC_017735


> AY330636|5|G5|37811782|AAR03857.1|Helicobacter_pylori_Ca52|+|3179..4507|tnpB|-|transposase 
B-like protein
Length=442

 Score =  542 bits (2046),  Expect = 1e-155, Method: Compositional matrix adjust.
 Identities = 345/432 (80%), Positives = 390/432 (91%), Gaps = 2/432 (0%)

Query  1    MYPTKEQQTKLQHSFFVYNQAYNICLNLQQEQYEKNKDLPTKQRKWQKSSELDSAIKHHL  60
            +YPTKEQQ KLQH FFVYNQAYNI LNL QEQYE NKDLP K+RKW+KSSELD AIKHHL
Sbjct  11   LYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKKSSELDHAIKHHL  70

Query  61   KARNLSFSSVVAQQSRMNAERALRDAFKVKNRGFPKFKNSKFAKQSFTWNNQGFSIKDFN  120
            +AR LSFSSV+AQQ+RMN ERAL+DAFKVKNRGFPKFKNSKFAKQSF WNNQGFSIK+ +
Sbjct  71   NARGLSFSSVIAQQARMNVERALKDAFKVKNRGFPKFKNSKFAKQSFLWNNQGFSIKESD  130

Query  121  E-RFKMFNLMKMPLKMRMHRDLPLNAKIKQIVVSCSHQKYFVSFSIEYEKELNTIKEPRN  179
            E RFK+F LMKMPL MRMHR++P N+K+KQIV+SCSH+KYFVSFS+EYE+++  IK+P++
Sbjct  131  EERFKIFTLMKMPLMMRMHRNFPPNSKVKQIVISCSHRKYFVSFSVEYEQDITPIKNPKD  190

Query  180  CVGVDLNIYDIALSVDLKEYEKLTDLEQYQKDMKEL-GLKVDENINLKRLIPTYSKLHSF  238
            CVG+DLN  DIA S ++++ EKLTD+ QYQ DMKEL G+ +DE+++ KRLIPTYSKL S+
Sbjct  191  CVGLDLNTLDIACSCEINNHEKLTDFKQYQTDMKELLGIEIDEELDTKRLIPTYSKLYSL  250

Query  239  KKYSKEFKRLQRKQSRRVLKSKQNKIKLGGNFYKTQKKLNKAFDKSSYQKLDRYHKITSE  298
            KKYS  FKRLQRKQSRRVLKSKQNK KLGGNFYKTQKKLN+AFDKSS QK DRYHKITSE
Sbjct  251  KKYSEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQKTDRYHKITSE  310

Query  299  LSKQFELIVVEDLQIKNMTKRAKLKNVKQKSGLNKSILNTSFYQIISFLDYKQQHNGKLL  358
            LSKQFELIVVEDLQ+KNMTKRAKLKNVKQKSGLN+SILN+SFYQIISFLDYKQQHNGKLL
Sbjct  311  LSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNASFYQIISFLDYKQQHNGKLL  370

Query  359  VKAPPQYTSKTCHSCGQINHELKLNHREYLCQNCGYIEHRDINAASNIlskglsllglgn  418
            VK PPQYTSKTCH CG+INH LKLNHR+Y C +CGY EHRDINAA+NILSKGLSL+G+GN
Sbjct  371  VKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGLSLFGVGN  430

Query  419  slADFKEQSLSY  430
              ADFKEQSLS 
Sbjct  431  IHADFKEQSLSC  442

31) HCD_07790 in NC_017735


> AY330636|5|G5|37811782|AAR03857.1|Helicobacter_pylori_Ca52|+|3179..4507|tnpB|-|transposase 
B-like protein
Length=442

 Score =  542 bits (2046),  Expect = 1e-155, Method: Compositional matrix adjust.
 Identities = 345/432 (80%), Positives = 390/432 (91%), Gaps = 2/432 (0%)

Query  1    MYPTKEQQTKLQHSFFVYNQAYNICLNLQQEQYEKNKDLPTKQRKWQKSSELDSAIKHHL  60
            +YPTKEQQ KLQH FFVYNQAYNI LNL QEQYE NKDLP K+RKW+KSSELD AIKHHL
Sbjct  11   LYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKKSSELDHAIKHHL  70

Query  61   KARNLSFSSVVAQQSRMNAERALRDAFKVKNRGFPKFKNSKFAKQSFTWNNQGFSIKDFN  120
            +AR LSFSSV+AQQ+RMN ERAL+DAFKVKNRGFPKFKNSKFAKQSF WNNQGFSIK+ +
Sbjct  71   NARGLSFSSVIAQQARMNVERALKDAFKVKNRGFPKFKNSKFAKQSFLWNNQGFSIKESD  130

Query  121  E-RFKMFNLMKMPLKMRMHRDLPLNAKIKQIVVSCSHQKYFVSFSIEYEKELNTIKEPRN  179
            E RFK+F LMKMPL MRMHR++P N+K+KQIV+SCSH+KYFVSFS+EYE+++  IK+P++
Sbjct  131  EERFKIFTLMKMPLMMRMHRNFPPNSKVKQIVISCSHRKYFVSFSVEYEQDITPIKNPKD  190

Query  180  CVGVDLNIYDIALSVDLKEYEKLTDLEQYQKDMKEL-GLKVDENINLKRLIPTYSKLHSF  238
            CVG+DLN  DIA S ++++ EKLTD+ QYQ DMKEL G+ +DE+++ KRLIPTYSKL S+
Sbjct  191  CVGLDLNTLDIACSCEINNHEKLTDFKQYQTDMKELLGIEIDEELDTKRLIPTYSKLYSL  250

Query  239  KKYSKEFKRLQRKQSRRVLKSKQNKIKLGGNFYKTQKKLNKAFDKSSYQKLDRYHKITSE  298
            KKYS  FKRLQRKQSRRVLKSKQNK KLGGNFYKTQKKLN+AFDKSS QK DRYHKITSE
Sbjct  251  KKYSEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQKTDRYHKITSE  310

Query  299  LSKQFELIVVEDLQIKNMTKRAKLKNVKQKSGLNKSILNTSFYQIISFLDYKQQHNGKLL  358
            LSKQFELIVVEDLQ+KNMTKRAKLKNVKQKSGLN+SILN+SFYQIISFLDYKQQHNGKLL
Sbjct  311  LSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNASFYQIISFLDYKQQHNGKLL  370

Query  359  VKAPPQYTSKTCHSCGQINHELKLNHREYLCQNCGYIEHRDINAASNIlskglsllglgn  418
            VK PPQYTSKTCH CG+INH LKLNHR+Y C +CGY EHRDINAA+NILSKGLSL+G+GN
Sbjct  371  VKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGLSLFGVGN  430

Query  419  slADFKEQSLSY  430
              ADFKEQSLS 
Sbjct  431  IHADFKEQSLSC  442

32) HCD_07940 in NC_017735


> AY330636|5|G5|37811782|AAR03857.1|Helicobacter_pylori_Ca52|+|3179..4507|tnpB|-|transposase 
B-like protein
Length=442

 Score =  542 bits (2046),  Expect = 1e-155, Method: Compositional matrix adjust.
 Identities = 345/432 (80%), Positives = 390/432 (91%), Gaps = 2/432 (0%)

Query  1    MYPTKEQQTKLQHSFFVYNQAYNICLNLQQEQYEKNKDLPTKQRKWQKSSELDSAIKHHL  60
            +YPTKEQQ KLQH FFVYNQAYNI LNL QEQYE NKDLP K+RKW+KSSELD AIKHHL
Sbjct  11   LYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKKSSELDHAIKHHL  70

Query  61   KARNLSFSSVVAQQSRMNAERALRDAFKVKNRGFPKFKNSKFAKQSFTWNNQGFSIKDFN  120
            +AR LSFSSV+AQQ+RMN ERAL+DAFKVKNRGFPKFKNSKFAKQSF WNNQGFSIK+ +
Sbjct  71   NARGLSFSSVIAQQARMNVERALKDAFKVKNRGFPKFKNSKFAKQSFLWNNQGFSIKESD  130

Query  121  E-RFKMFNLMKMPLKMRMHRDLPLNAKIKQIVVSCSHQKYFVSFSIEYEKELNTIKEPRN  179
            E RFK+F LMKMPL MRMHR++P N+K+KQIV+SCSH+KYFVSFS+EYE+++  IK+P++
Sbjct  131  EERFKIFTLMKMPLMMRMHRNFPPNSKVKQIVISCSHRKYFVSFSVEYEQDITPIKNPKD  190

Query  180  CVGVDLNIYDIALSVDLKEYEKLTDLEQYQKDMKEL-GLKVDENINLKRLIPTYSKLHSF  238
            CVG+DLN  DIA S ++++ EKLTD+ QYQ DMKEL G+ +DE+++ KRLIPTYSKL S+
Sbjct  191  CVGLDLNTLDIACSCEINNHEKLTDFKQYQTDMKELLGIEIDEELDTKRLIPTYSKLYSL  250

Query  239  KKYSKEFKRLQRKQSRRVLKSKQNKIKLGGNFYKTQKKLNKAFDKSSYQKLDRYHKITSE  298
            KKYS  FKRLQRKQSRRVLKSKQNK KLGGNFYKTQKKLN+AFDKSS QK DRYHKITSE
Sbjct  251  KKYSEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQKTDRYHKITSE  310

Query  299  LSKQFELIVVEDLQIKNMTKRAKLKNVKQKSGLNKSILNTSFYQIISFLDYKQQHNGKLL  358
            LSKQFELIVVEDLQ+KNMTKRAKLKNVKQKSGLN+SILN+SFYQIISFLDYKQQHNGKLL
Sbjct  311  LSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNASFYQIISFLDYKQQHNGKLL  370

Query  359  VKAPPQYTSKTCHSCGQINHELKLNHREYLCQNCGYIEHRDINAASNIlskglsllglgn  418
            VK PPQYTSKTCH CG+INH LKLNHR+Y C +CGY EHRDINAA+NILSKGLSL+G+GN
Sbjct  371  VKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGLSLFGVGN  430

Query  419  slADFKEQSLSY  430
              ADFKEQSLS 
Sbjct  431  IHADFKEQSLSC  442

33) HCD_08729 in NC_017736


> AY330636|5|G5|37811782|AAR03857.1|Helicobacter_pylori_Ca52|+|3179..4507|tnpB|-|transposase 
B-like protein
Length=442

 Score =  542 bits (2046),  Expect = 1e-155, Method: Compositional matrix adjust.
 Identities = 345/432 (80%), Positives = 390/432 (91%), Gaps = 2/432 (0%)

Query  1    MYPTKEQQTKLQHSFFVYNQAYNICLNLQQEQYEKNKDLPTKQRKWQKSSELDSAIKHHL  60
            +YPTKEQQ KLQH FFVYNQAYNI LNL QEQYE NKDLP K+RKW+KSSELD AIKHHL
Sbjct  11   LYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKKSSELDHAIKHHL  70

Query  61   KARNLSFSSVVAQQSRMNAERALRDAFKVKNRGFPKFKNSKFAKQSFTWNNQGFSIKDFN  120
            +AR LSFSSV+AQQ+RMN ERAL+DAFKVKNRGFPKFKNSKFAKQSF WNNQGFSIK+ +
Sbjct  71   NARGLSFSSVIAQQARMNVERALKDAFKVKNRGFPKFKNSKFAKQSFLWNNQGFSIKESD  130

Query  121  E-RFKMFNLMKMPLKMRMHRDLPLNAKIKQIVVSCSHQKYFVSFSIEYEKELNTIKEPRN  179
            E RFK+F LMKMPL MRMHR++P N+K+KQIV+SCSH+KYFVSFS+EYE+++  IK+P++
Sbjct  131  EERFKIFTLMKMPLMMRMHRNFPPNSKVKQIVISCSHRKYFVSFSVEYEQDITPIKNPKD  190

Query  180  CVGVDLNIYDIALSVDLKEYEKLTDLEQYQKDMKEL-GLKVDENINLKRLIPTYSKLHSF  238
            CVG+DLN  DIA S ++++ EKLTD+ QYQ DMKEL G+ +DE+++ KRLIPTYSKL S+
Sbjct  191  CVGLDLNTLDIACSCEINNHEKLTDFKQYQTDMKELLGIEIDEELDTKRLIPTYSKLYSL  250

Query  239  KKYSKEFKRLQRKQSRRVLKSKQNKIKLGGNFYKTQKKLNKAFDKSSYQKLDRYHKITSE  298
            KKYS  FKRLQRKQSRRVLKSKQNK KLGGNFYKTQKKLN+AFDKSS QK DRYHKITSE
Sbjct  251  KKYSEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQKTDRYHKITSE  310

Query  299  LSKQFELIVVEDLQIKNMTKRAKLKNVKQKSGLNKSILNTSFYQIISFLDYKQQHNGKLL  358
            LSKQFELIVVEDLQ+KNMTKRAKLKNVKQKSGLN+SILN+SFYQIISFLDYKQQHNGKLL
Sbjct  311  LSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNASFYQIISFLDYKQQHNGKLL  370

Query  359  VKAPPQYTSKTCHSCGQINHELKLNHREYLCQNCGYIEHRDINAASNIlskglsllglgn  418
            VK PPQYTSKTCH CG+INH LKLNHR+Y C +CGY EHRDINAA+NILSKGLSL+G+GN
Sbjct  371  VKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGLSLFGVGN  430

Query  419  slADFKEQSLSY  430
              ADFKEQSLS 
Sbjct  431  IHADFKEQSLSC  442

34) HCD_08764 in NC_017736


> AY330636|5|G5|37811782|AAR03857.1|Helicobacter_pylori_Ca52|+|3179..4507|tnpB|-|transposase 
B-like protein
Length=442

 Score =  542 bits (2046),  Expect = 1e-155, Method: Compositional matrix adjust.
 Identities = 345/432 (80%), Positives = 390/432 (91%), Gaps = 2/432 (0%)

Query  1    MYPTKEQQTKLQHSFFVYNQAYNICLNLQQEQYEKNKDLPTKQRKWQKSSELDSAIKHHL  60
            +YPTKEQQ KLQH FFVYNQAYNI LNL QEQYE NKDLP K+RKW+KSSELD AIKHHL
Sbjct  11   LYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKKSSELDHAIKHHL  70

Query  61   KARNLSFSSVVAQQSRMNAERALRDAFKVKNRGFPKFKNSKFAKQSFTWNNQGFSIKDFN  120
            +AR LSFSSV+AQQ+RMN ERAL+DAFKVKNRGFPKFKNSKFAKQSF WNNQGFSIK+ +
Sbjct  71   NARGLSFSSVIAQQARMNVERALKDAFKVKNRGFPKFKNSKFAKQSFLWNNQGFSIKESD  130

Query  121  E-RFKMFNLMKMPLKMRMHRDLPLNAKIKQIVVSCSHQKYFVSFSIEYEKELNTIKEPRN  179
            E RFK+F LMKMPL MRMHR++P N+K+KQIV+SCSH+KYFVSFS+EYE+++  IK+P++
Sbjct  131  EERFKIFTLMKMPLMMRMHRNFPPNSKVKQIVISCSHRKYFVSFSVEYEQDITPIKNPKD  190

Query  180  CVGVDLNIYDIALSVDLKEYEKLTDLEQYQKDMKEL-GLKVDENINLKRLIPTYSKLHSF  238
            CVG+DLN  DIA S ++++ EKLTD+ QYQ DMKEL G+ +DE+++ KRLIPTYSKL S+
Sbjct  191  CVGLDLNTLDIACSCEINNHEKLTDFKQYQTDMKELLGIEIDEELDTKRLIPTYSKLYSL  250

Query  239  KKYSKEFKRLQRKQSRRVLKSKQNKIKLGGNFYKTQKKLNKAFDKSSYQKLDRYHKITSE  298
            KKYS  FKRLQRKQSRRVLKSKQNK KLGGNFYKTQKKLN+AFDKSS QK DRYHKITSE
Sbjct  251  KKYSEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQKTDRYHKITSE  310

Query  299  LSKQFELIVVEDLQIKNMTKRAKLKNVKQKSGLNKSILNTSFYQIISFLDYKQQHNGKLL  358
            LSKQFELIVVEDLQ+KNMTKRAKLKNVKQKSGLN+SILN+SFYQIISFLDYKQQHNGKLL
Sbjct  311  LSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNASFYQIISFLDYKQQHNGKLL  370

Query  359  VKAPPQYTSKTCHSCGQINHELKLNHREYLCQNCGYIEHRDINAASNIlskglsllglgn  418
            VK PPQYTSKTCH CG+INH LKLNHR+Y C +CGY EHRDINAA+NILSKGLSL+G+GN
Sbjct  371  VKVPPQYTSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGLSLFGVGN  430

Query  419  slADFKEQSLSY  430
              ADFKEQSLS 
Sbjct  431  IHADFKEQSLSC  442

35) tnpB2a in NC_017374


> AY330636|5|G5|37811782|AAR03857.1|Helicobacter_pylori_Ca52|+|3179..4507|tnpB|-|transposase 
B-like protein
Length=442

 Score =  480 bits (1810),  Expect = 4e-137, Method: Compositional matrix adjust.
 Identities = 334/358 (94%), Positives = 342/358 (96%), Gaps = 0/358 (0%)

Query  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWEKSS  60
            MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKD PPKERKW KSS
Sbjct  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKKSS  60

Query  61   ELDKAIKHHLNTRGLSFSSVIAQQSRMNVERALKDAFKVKNRGFPKFKNSKSAKQSFSWN  120
            ELD AIKHHLN+RGLSFSSVIAQQ+RMNVERALKDAFKVKNRGFPKFKNSK AKQSF WN
Sbjct  61   ELDHAIKHHLNARGLSFSSVIAQQARMNVERALKDAFKVKNRGFPKFKNSKFAKQSFLWN  120

Query  121  NQGFSIKESDEERFKIFTLMKMPLMMRMHRNFPPHSKVKQIVISCRHRKYFVSFNVEYEQ  180
            NQGFSIKESDEERFKIFTLMKMPLMMRMHRNFPP+SKVKQIVISC HRKYFVSF+VEYEQ
Sbjct  121  NQGFSIKESDEERFKIFTLMKMPLMMRMHRNFPPNSKVKQIVISCSHRKYFVSFSVEYEQ  180

Query  181  DIIPIKNPKNGVGLDLNILDIACSCGVNNHKKLTDFKRYSTDMKellgieideeldTKLL  240
            DI PIKNPK+ VGLDLN LDIACSC +NNH KLTDFK+Y TDMKELLGIEIDEELDTK L
Sbjct  181  DITPIKNPKDCVGLDLNTLDIACSCEINNHEKLTDFKQYQTDMKELLGIEIDEELDTKRL  240

Query  241  IPTYsklyslkkhskkfkrlqrkQSRRVLKSKQNKTKLGGNFYKTQKKLNQVFDKSSHQK  300
            IPTYSKLYSLKK S KFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQ FDKSSHQK
Sbjct  241  IPTYSKLYSLKKYSEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300

Query  301  TDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISF  358
            TDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILN+SFYQIISF
Sbjct  301  TDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNASFYQIISF  358

36) tnpB1 in NC_017381


> AY330636|5|G5|37811782|AAR03857.1|Helicobacter_pylori_Ca52|+|3179..4507|tnpB|-|transposase 
B-like protein
Length=442

 Score =  449 bits (1690),  Expect = 1e-127, Method: Compositional matrix adjust.
 Identities = 313/338 (93%), Positives = 321/338 (95%), Gaps = 0/338 (0%)

Query  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWEKSS  60
            MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKD PPKERKW KSS
Sbjct  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKKSS  60

Query  61   ELDKAIKHHLNTRGLSFSSVIAQQSRMNVERALKDAFKVKNRGFPKFKNSKSAKQSFSWN  120
            ELD AIKHHLN+RGLSFSSVIAQQ+RMNVERALKDAFKVKNRGFPKFKNSK AKQSF WN
Sbjct  61   ELDHAIKHHLNARGLSFSSVIAQQARMNVERALKDAFKVKNRGFPKFKNSKFAKQSFLWN  120

Query  121  NQGFSIKESDEERFKIFTLMKMPLMMRMHRNFPPHSKVKQIVISCRHRKYFVSFNVEYEQ  180
            NQGFSIKESDEERFKIFTLMKMPLMMRMHRNFPP+SKVKQIVISC HRKYFVSF+VEYEQ
Sbjct  121  NQGFSIKESDEERFKIFTLMKMPLMMRMHRNFPPNSKVKQIVISCSHRKYFVSFSVEYEQ  180

Query  181  DIIPIKNPKNGVGLDLNILDIACSCGVNNHKKLTDFKRYSTDMKellgieideeldTKLL  240
            DI PIKNPK+ VGLDLN LDIACSC +NNH KLTDFK+Y TDMKELLGIEIDEELDTK L
Sbjct  181  DITPIKNPKDCVGLDLNTLDIACSCEINNHEKLTDFKQYQTDMKELLGIEIDEELDTKRL  240

Query  241  IPTYsklyslkkhskkfkrlqrkQSRRVLKSKQNKTKLGGNFYKTQKKLNQVFDKSSHQK  300
            IPTYSKLYSLKK S KFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQ FDKSSHQK
Sbjct  241  IPTYSKLYSLKKYSEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300

Query  301  TDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLKTIK  338
            TDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLK +K
Sbjct  301  TDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLKNVK  338

37) hp908_1540 in NC_017357


> AY330636|5|G5|37811782|AAR03857.1|Helicobacter_pylori_Ca52|+|3179..4507|tnpB|-|transposase 
B-like protein
Length=442

 Score =  442 bits (1664),  Expect = 1e-125, Method: Compositional matrix adjust.
 Identities = 309/333 (93%), Positives = 317/333 (96%), Gaps = 0/333 (0%)

Query  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDSPPKERKWEKSS  60
            MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKD PPKERKW KSS
Sbjct  1    MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKKSS  60

Query  61   ELDKAIKHHLNTRGLSFSSVIAQQSRMNVERALKDAFKVKNRGFPKFKNSKSAKQSFSWN  120
            ELD AIKHHLN+RGLSFSSVIAQQ+RMNVERALKDAFKVKNRGFPKFKNSK AKQSF WN
Sbjct  61   ELDHAIKHHLNARGLSFSSVIAQQARMNVERALKDAFKVKNRGFPKFKNSKFAKQSFLWN  120

Query  121  NQGFSIKESDEERFKIFTLMKMPLMMRMHRNFPPHSKVKQIVISCRHRKYFVSFNVEYEQ  180
            NQGFSIKESDEERFKIFTLMKMPLMMRMHRNFPP+SKVKQIVISC HRKYFVSF+VEYEQ
Sbjct  121  NQGFSIKESDEERFKIFTLMKMPLMMRMHRNFPPNSKVKQIVISCSHRKYFVSFSVEYEQ  180

Query  181  DIIPIKNPKNGVGLDLNILDIACSCGVNNHKKLTDFKRYSTDMKellgieideeldTKLL  240
            DI PIKNPK+ VGLDLN LDIACSC +NNH KLTDFK+Y TDMKELLGIEIDEELDTK L
Sbjct  181  DITPIKNPKDCVGLDLNTLDIACSCEINNHEKLTDFKQYQTDMKELLGIEIDEELDTKRL  240

Query  241  IPTYsklyslkkhskkfkrlqrkQSRRVLKSKQNKTKLGGNFYKTQKKLNQVFDKSSHQK  300
            IPTYSKLYSLKK S KFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQ FDKSSHQK
Sbjct  241  IPTYSKLYSLKKYSEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQK  300

Query  301  TDRYHKITSELSKQFELIVVEDLQVKNMTKRAN  333
            TDRYHKITSELSKQFELIVVEDLQVKNMTKRA+
Sbjct  301  TDRYHKITSELSKQFELIVVEDLQVKNMTKRAK  333