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Homologs of unnamed gene of AF241171

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) G655_14045
( YP_007709652.1 )

propionate catabolism operon regulator prpR

NC_020912
(Pseudomonas aeruginosa B136-33)

0.0

2) M062_11515
( YP_008132736.1 )

Fis family transcriptional regulator

NC_021577
(Pseudomonas aeruginosa RP73)

0.0

3) prpR
( YP_005981436.1 )

propionate catabolism operon regulator

NC_017549
(Pseudomonas aeruginosa NCGM2.S1)

0.0

4) PLES_31041
( YP_002440693.1 )

propionate catabolism operon regulator prpR

NC_011770
(Pseudomonas aeruginosa LESB58)

0.0

5) PP_2790
( NP_744934.1 )

Fis family transcriptional regulator

NC_002947
(Pseudomonas putida KT2440)

0.0

6) B479_13925
( YP_007229624.1 )

Fis family transcriptional regulator

NC_019905
(Pseudomonas putida PC9)

0.0

7) prpR
( YP_791029.1 )

propionate catabolism operon regulator

NC_008463
(Pseudomonas aeruginosa UCBPP-PA14)

0.0

8) yqiR
( YP_006558606.1 )

sigma L-dependent transcriptional regulator yqiR

NC_018268
(Marinobacter sp. BSs20148)

8e-127

9) prpR
( YP_583740.1 )

propionate catabolism activator

NC_007973
(Cupriavidus metallidurans CH34)

4e-123

10) PT7_0416
( YP_004415580.1 )

sigma-54 dependent transcription regulator

NC_015458
(Pusillimonas sp. T7-7)

7e-117

11) prpR
( YP_001632114.1 )

propionate catabolism operon regulator

NC_010170
(Bordetella petrii DSM 12804)

3e-113

12) Bphy_6705
( YP_001862776.1 )

Fis family proprionate catabolism activator

NC_010625
(Burkholderia phymatum STM815)

2e-104

13) A2cp1_0387
( YP_002490810.1 )

Fis family proprionate catabolism activator

NC_011891
(Anaeromyxobacter dehalogenans 2CP-1)

3e-104

14) prpR
( YP_006031284.1 )

propionate catabolism operon regulatory protein

NC_017575
(Ralstonia solanacearum Po82)

3e-103

15) RPSI07_mp0088
( YP_003749102.1 )

putative propionate catabolism operon regulatory transcription regulator (prpR)

NC_014310
(Ralstonia solanacearum PSI07)

7e-103

16) prpR
( NP_521684.1 )

propionate catabolism operon regulatory transcription regulator protein

NC_003296
(Ralstonia solanacearum GMI1000)

1e-101

17) prpR
( YP_008237306.1 )

Propionate catabolism operon regulatory protein PrpR

NC_021745
(Ralstonia solanacearum FQY_4)

8e-102

18) AnaeK_0385
( YP_002132756.1 )

Fis family proprionate catabolism activator

NC_011145
(Anaeromyxobacter sp. K)

2e-100

19) C380_20065
( YP_006856345.1 )

propionate catabolism operon regulator

NC_018708
(Acidovorax sp. KKS102)

8e-100

20) Adeh_0357
( YP_463570.1 )

sigma-54 dependent trancsriptional regulator

NC_007760
(Anaeromyxobacter dehalogenans 2CP-C)

1e-98

21) prpR
( NP_885007.1 )

propionate catabolism operon regulatory protein

NC_002928
(Bordetella parapertussis 12822)

1e-96

22) prpR
( YP_006900265.1 )

propionate catabolism operon regulatory protein

NC_018829
(Bordetella bronchiseptica MO149)

3e-96

23) prpR
( NP_889662.1 )

propionate catabolism operon regulatory protein

NC_002927
(Bordetella bronchiseptica RB50)

3e-96

24) prpR
( YP_006896700.1 )

propionate catabolism operon regulatory protein

NC_018828
(Bordetella parapertussis Bpp5)

6e-96

25) prpR
( YP_006967008.1 )

propionate catabolism operon regulatory protein

NC_019382
(Bordetella bronchiseptica 253)

2e-95

26) RBRH_00395
( YP_004021995.1 )

sigma-54-dependent transcriptional activator

NC_014718
(Burkholderia rhizoxinica HKI 454)

2e-95

27) Anae109_2878
( YP_001380062.1 )

sigma-54 dependent trancsriptional regulator

NC_009675
(Anaeromyxobacter sp. Fw109-5)

5e-94

28) CNE_BB1p08000
( YP_004688253.1 )

hypothetical protein

NC_015727
(Cupriavidus necator N-1)

2e-91

29) GYMC52_3628
( YP_004134108.1 )

proprionate catabolism activator, Fis family

NC_014916
(Geobacillus sp. Y412MC52)

2e-90

30) GYMC61_3598
( YP_003254624.1 )

Fis family transcriptional regulator

NC_013412
(Geobacillus sp. Y412MC61)

2e-90

31) Anae109_3725
( YP_001380888.1 )

sigma-54 dependent trancsriptional regulator

NC_009675
(Anaeromyxobacter sp. Fw109-5)

4e-88

32) prpR
( YP_004620907.1 )

transcriptional regulator PrpR

NC_015677
(Ramlibacter tataouinensis TTB310)

3e-73

33) DelCs14_3219
( YP_004488575.1 )

Fis family proprionate catabolism activator

NC_015563
(Delftia sp. Cs1-4)

6e-72

34) Daci_3582
( YP_001564601.1 )

Fis family proprionate catabolism activator

NC_010002
(Delftia acidovorans SPH-1)

7e-72

35) Desru_3359
( YP_004546850.1 )

PAS sensor protein

NC_015589
(Desulfotomaculum ruminis DSM 2154)

2e-68

36) CtCNB1_1263
( YP_003277305.1 )

sigma54 specific transcriptional regulator, Fis

NC_013446
(Comamonas testosteroni CNB-1)

8e-68

37) Desku_1660
( YP_004517039.1 )

Fis family transcriptional regulator

NC_015573
(Desulfotomaculum kuznetsovii DSM 6115)

2e-64

• Sequence Alignments

1) G655_14045 in NC_020912


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  989 bits (3747),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 648/650 (99%), Positives = 650/650 (100%), Gaps = 0/650 (0%)

Query  1    MRPPlsqvvvlvshlqRPRQRSRLASLVAGLAAGYPDVHIEVLDTSVSEALQTARDLEQR  60
            MRPPLSQVVVLVSHLQRPRQRSRLASLVAGLAAGYPDVHIEVLDTSVSEALQTARDLEQR
Sbjct  1    MRPPLSQVVVLVSHLQRPRQRSRLASLVAGLAAGYPDVHIEVLDTSVSEALQTARDLEQR  60

Query  61   GKADVFVCAGATAAYLRRHLARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDL  120
            GKADVFVCAGATAAYLRRHLARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDL
Sbjct  61   GKADVFVCAGATAAYLRRHLARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDL  120

Query  121  QAMRTLFTVQVHQVAYTTLEEARQAVLEVARLGCRSIIGSSTVVELAEQAGLHGVLSLSE  180
            QAMRTLFTVQVHQVAYTTLEEARQAVLEV+RLGCRSIIGSSTVVELAEQAGLHGVLSLSE
Sbjct  121  QAMRTLFTVQVHQVAYTTLEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSE  180

Query  181  DTARKALEEAMGVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLEL  240
            DTARKALEEAMGVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLEL
Sbjct  181  DTARKALEEAMGVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLEL  240

Query  241  PVSSALGRPLQQLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLT  300
            PVSSALGRPLQQLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLT
Sbjct  241  PVSSALGRPLQQLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLT  300

Query  301  CQDITAVQRADQRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITG  360
            CQDITAVQRADQRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITG
Sbjct  301  CQDITAVQRADQRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITG  360

Query  361  ESGTGKELLAQGIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGL  420
            ESGTGKELLAQGIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGL
Sbjct  361  ESGTGKELLAQGIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGL  420

Query  421  FEAAHRGTLFLDEIGDMPVSlqtrllrvlqerevlrlGGTEPISIDVRIVAATHKDLGAA  480
            FEAAHRGTLFLDEIGDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRI+AATHKDLGAA
Sbjct  421  FEAAHRGTLFLDEIGDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAA  480

Query  481  MKDREFRTDLYYRLNILRLQTTPLRERPEDIPLICQGISQRLLVQGQPPGAAGITTLLLP  540
            MKDREFRTDLYYRLNILRLQTTPLRERPEDIPLICQGISQRLLVQGQPPGAAGITTLLLP
Sbjct  481  MKDREFRTDLYYRLNILRLQTTPLRERPEDIPLICQGISQRLLVQGQPPGAAGITTLLLP  540

Query  541  YLVRHSWPGNVRELENVIERAMLSASEIFHEHGVDEHYLARVLPELFEGQPQPRSRKEPS  600
            YLVRHSWPGNVRELENVIERAMLSASEIFHEHGVDEHYLARVLPELFEGQPQPRSRKEPS
Sbjct  541  YLVRHSWPGNVRELENVIERAMLSASEIFHEHGVDEHYLARVLPELFEGQPQPRSRKEPS  600

Query  601  RTKDLHAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLRSAR  650
            RTKDLHAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLRSAR
Sbjct  601  RTKDLHAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLRSAR  650

2) M062_11515 in NC_021577


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  989 bits (3747),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 648/650 (99%), Positives = 650/650 (100%), Gaps = 0/650 (0%)

Query  1    MRPPlsqvvvlvshlqRPRQRSRLASLVAGLAAGYPDVHIEVLDTSVSEALQTARDLEQR  60
            MRPPLSQVVVLVSHLQRPRQRSRLASLVAGLAAGYPDVHIEVLDTSVSEALQTARDLEQR
Sbjct  1    MRPPLSQVVVLVSHLQRPRQRSRLASLVAGLAAGYPDVHIEVLDTSVSEALQTARDLEQR  60

Query  61   GKADVFVCAGATAAYLRRHLARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDL  120
            GKADVFVCAGATAAYLRRHLARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDL
Sbjct  61   GKADVFVCAGATAAYLRRHLARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDL  120

Query  121  QAMRTLFTVQVHQVAYTTLEEARQAVLEVARLGCRSIIGSSTVVELAEQAGLHGVLSLSE  180
            QAMRTLFTVQVHQVAYTTLEEARQAVLEV+RLGCRSIIGSSTVVELAEQAGLHGVLSLSE
Sbjct  121  QAMRTLFTVQVHQVAYTTLEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSE  180

Query  181  DTARKALEEAMGVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLEL  240
            DTARKALEEAMGVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLEL
Sbjct  181  DTARKALEEAMGVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLEL  240

Query  241  PVSSALGRPLQQLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLT  300
            PVSSALGRPLQQLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLT
Sbjct  241  PVSSALGRPLQQLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLT  300

Query  301  CQDITAVQRADQRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITG  360
            CQDITAVQRADQRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITG
Sbjct  301  CQDITAVQRADQRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITG  360

Query  361  ESGTGKELLAQGIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGL  420
            ESGTGKELLAQGIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGL
Sbjct  361  ESGTGKELLAQGIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGL  420

Query  421  FEAAHRGTLFLDEIGDMPVSlqtrllrvlqerevlrlGGTEPISIDVRIVAATHKDLGAA  480
            FEAAHRGTLFLDEIGDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRI+AATHKDLGAA
Sbjct  421  FEAAHRGTLFLDEIGDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAA  480

Query  481  MKDREFRTDLYYRLNILRLQTTPLRERPEDIPLICQGISQRLLVQGQPPGAAGITTLLLP  540
            MKDREFRTDLYYRLNILRLQTTPLRERPEDIPLICQGISQRLLVQGQPPGAAGITTLLLP
Sbjct  481  MKDREFRTDLYYRLNILRLQTTPLRERPEDIPLICQGISQRLLVQGQPPGAAGITTLLLP  540

Query  541  YLVRHSWPGNVRELENVIERAMLSASEIFHEHGVDEHYLARVLPELFEGQPQPRSRKEPS  600
            YLVRHSWPGNVRELENVIERAMLSASEIFHEHGVDEHYLARVLPELFEGQPQPRSRKEPS
Sbjct  541  YLVRHSWPGNVRELENVIERAMLSASEIFHEHGVDEHYLARVLPELFEGQPQPRSRKEPS  600

Query  601  RTKDLHAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLRSAR  650
            RTKDLHAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLRSAR
Sbjct  601  RTKDLHAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLRSAR  650

3) prpR in NC_017549


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  988 bits (3743),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 646/650 (99%), Positives = 649/650 (99%), Gaps = 0/650 (0%)

Query  1    MRPPlsqvvvlvshlqRPRQRSRLASLVAGLAAGYPDVHIEVLDTSVSEALQTARDLEQR  60
            MRPPLSQVVVLVSHLQRPRQRSRLASLVAGLAAGYPDVHIEVLDTSVSEALQTARDLEQR
Sbjct  1    MRPPLSQVVVLVSHLQRPRQRSRLASLVAGLAAGYPDVHIEVLDTSVSEALQTARDLEQR  60

Query  61   GKADVFVCAGATAAYLRRHLARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDL  120
            GKADVFVCAGATAAYLRRHLARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDL
Sbjct  61   GKADVFVCAGATAAYLRRHLARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDL  120

Query  121  QAMRTLFTVQVHQVAYTILEEARQAVLEVARLGCRSIIGSSTVVELAEQAGLHGVLSLSE  180
            QAMRTLFTVQVHQVAYT LEEARQAVLEV+RLGCRSIIGSSTVVELAEQAGLHGVLSLSE
Sbjct  121  QAMRTLFTVQVHQVAYTTLEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSE  180

Query  181  DTARKALEEAMGVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLEL  240
            DTARKALEEAMGVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLEL
Sbjct  181  DTARKALEEAMGVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLEL  240

Query  241  PVSSALGRPLQQLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLT  300
            PVSSALGRPLQQLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLT
Sbjct  241  PVSSALGRPLQQLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLT  300

Query  301  CQDITAVQRADQRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFATSHSTILITG  360
            CQDITAVQRADQRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFA+SHSTILITG
Sbjct  301  CQDITAVQRADQRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITG  360

Query  361  ESGTGKELLAQGIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGL  420
            ESGTGKELLAQGIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGL
Sbjct  361  ESGTGKELLAQGIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGL  420

Query  421  FEAAHRGTLFLDEIGDMPVSlqtrllrvlqerevlrlGGTEPISIDVRIVAATHKDLGAA  480
            FEAAHRGTLFLDEIGDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRI+AATHKDLGAA
Sbjct  421  FEAAHRGTLFLDEIGDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAA  480

Query  481  MKDREFRTDLYYRLNILRLQTTPLRERPEDIPLICQGISQRLLVQGQPPGAAGITTLLLP  540
            MKDREFRTDLYYRLNILRLQTTPLRERPEDIPLICQGISQRLLVQGQPPGAAGITTLLLP
Sbjct  481  MKDREFRTDLYYRLNILRLQTTPLRERPEDIPLICQGISQRLLVQGQPPGAAGITTLLLP  540

Query  541  YLVRHSWPGNVRELENVIERAMLSASEIFHEHGVDEHYLARVLPELFEGQPQPRSRKEPS  600
            YLVRHSWPGNVRELENVIERAMLSASEIFHEHGVDEHYLARVLPELFEGQPQPRSRKEPS
Sbjct  541  YLVRHSWPGNVRELENVIERAMLSASEIFHEHGVDEHYLARVLPELFEGQPQPRSRKEPS  600

Query  601  RTKDLHAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLRSAR  650
            RTKDLHAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLRSAR
Sbjct  601  RTKDLHAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLRSAR  650

4) PLES_31041 in NC_011770


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  987 bits (3739),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 648/650 (99%), Positives = 650/650 (100%), Gaps = 0/650 (0%)

Query  1    MRPPlsqvvvlvshlqRPRQRSRLASLVAGLAAGYPDVHIEVLDTSVSEALQTARDLEQR  60
            MRPPLSQVVVLVSHLQRPRQRSRLASLVAGLAAGYPDVHIEVLDTSVSEALQTARDLEQR
Sbjct  1    MRPPLSQVVVLVSHLQRPRQRSRLASLVAGLAAGYPDVHIEVLDTSVSEALQTARDLEQR  60

Query  61   GKADVFVCAGATAAYLRRHLARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDL  120
            GKADVFVCAGATAAYLRRHLARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDL
Sbjct  61   GKADVFVCAGATAAYLRRHLARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDL  120

Query  121  QAMRTLFTVQVHQVAYTTLEEARQAVLEVARLGCRSIIGSSTVVELAEQAGLHGVLSLSE  180
            QAMRTLFTVQVHQVAYTTLEEARQAVLEV+RLGCRSIIGSSTVVELAEQAGLHGVLSLSE
Sbjct  121  QAMRTLFTVQVHQVAYTTLEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSE  180

Query  181  DTARKALEEAMGVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLEL  240
            DTARKALEEAMGVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLEL
Sbjct  181  DTARKALEEAMGVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLEL  240

Query  241  PVSSALGRPLQQLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLT  300
            PVSSALGRPLQQLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLT
Sbjct  241  PVSSALGRPLQQLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLT  300

Query  301  CQDITAVQRADQRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITG  360
            CQDITAVQRADQRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITG
Sbjct  301  CQDITAVQRADQRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITG  360

Query  361  ESGTGKELLAQGIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGL  420
            ESGTGKELLAQGIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGL
Sbjct  361  ESGTGKELLAQGIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGL  420

Query  421  FEAAHRGTLFLDEIGDMPVSlqtrllrvlqerevlrlGGTEPISIDVRIIAATHKDLGAA  480
            FEAAHRGTLFLDEIGDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAA
Sbjct  421  FEAAHRGTLFLDEIGDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAA  480

Query  481  MKDRELRTDLYYRLNILRLQTTPLRERPEDIPLICQGISQRLLVQGQPPGAAGITTLLLP  540
            MKDRE+RTDLYYRLNILRLQTTPLRERPEDIPLICQGISQRLLVQGQPPGAAGITTLLLP
Sbjct  481  MKDREFRTDLYYRLNILRLQTTPLRERPEDIPLICQGISQRLLVQGQPPGAAGITTLLLP  540

Query  541  YLVRHSWPGNVRELENVIERAMLSASEIFHEHGVDEHYLARVLPELFEGQPQPRSRKEPS  600
            YLVRHSWPGNVRELENVIERAMLSASEIFHEHGVDEHYLARVLPELFEGQPQPRSRKEPS
Sbjct  541  YLVRHSWPGNVRELENVIERAMLSASEIFHEHGVDEHYLARVLPELFEGQPQPRSRKEPS  600

Query  601  RTKDLHAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLRSAR  650
            RTKDLHAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLRSAR
Sbjct  601  RTKDLHAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLRSAR  650

5) PP_2790 in NC_002947


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  870 bits (3295),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 549/644 (86%), Positives = 613/644 (96%), Gaps = 0/644 (0%)

Query  6    SQVVVLISHLQRPQQRSRLAHVVAGLTTDYPDTRIEVLDTSVAEALQTARELEQAGKVDV  65
            SQVVVL+SHLQRP+QRSRLA +VAGL+++YPD +IEVLDTSV+EALQTAR+LEQ GK DV
Sbjct  6    SQVVVLVSHLQRPRQRSRLASLVAGLAAGYPDVHIEVLDTSVSEALQTARDLEQRGKADV  65

Query  66   FVCAGATAAYLRKHLTRPVLAMRVGSGDLLRALGQARERSSQVAVLSYNHVNHDLQAMAA  125
            FVCAGATAAYLR+HL+RPVL+MRVG+GDLLRAL QARE+SS+VA+LSYN++++DLQAM +
Sbjct  66   FVCAGATAAYLRRHLARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRT  125

Query  126  LFTVQVHQAAYTSLeearqaveqaaqLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARK  185
            LFTVQVHQ AYT+LEEARQAV + ++LGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARK
Sbjct  126  LFTVQVHQVAYTTLEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARK  185

Query  186  ALEEALGILDTQRVEIAKRRHLNAVLRHIPAGVAAVDNQGVVQSLNPALAQLLDLPVSAA  245
            ALEEA+G+LD+QR+EIAKRRHL+AVL+HIP+GVAAVDNQGVVQSLNPALAQLL+LPVS+A
Sbjct  186  ALEEAMGVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSA  245

Query  246  LGRPLQQLCPELDLQQALQEGTGEENRVMRLGSHAVVSNLLPILENGERTGLVLTCQDIT  305
            LGRPLQQLCPELDLQQAL++G GEENRV+RLGSHAVVSNLLPILENGERTGLVLTCQDIT
Sbjct  246  LGRPLQQLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDIT  305

Query  306  VVQRADQRIRSTRRPGAFTARYRLDQLNGNSKANREMLQLAKRFATSHSTILITGESGTG  365
             VQRADQRIRSTRRPGAFTARYRL+QLNG SKANREMLQLAKRFA+SHSTILITGESGTG
Sbjct  306  AVQRADQRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTG  365

Query  366  KELLAQGIHNESPRRQGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAH  425
            KELLAQGIHNESPRR+GPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAH
Sbjct  366  KELLAQGIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAH  425

Query  426  RGTLFLDEIGDMPVSlqtrllrvlqerevlrlGSTEPIAIDVRIIAATHKDLRSAMDDGD  485
            RGTLFLDEIGDMPVSLQTRLLRVLQEREVLRLG+TEPI+IDVRIIAATHKDL +AM D +
Sbjct  426  RGTLFLDEIGDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDRE  485

Query  486  FRTDLYFRLNILRLQTTPLRERPEDIALICRGISQRLLVQGQPPGAADIPAALLPYLERY  545
            FRTDLY+RLNILRLQTTPLRERPEDI+LIC+GISQRLLVQGQPPGAA+I + LLPYL R 
Sbjct  486  FRTDLYYRLNILRLQTTPLRERPEDIPLICQGISQRLLVQGQPPGAAGITTLLLPYLVRH  545

Query  546  AWPGNVRELENVIERAMLSARELLEEHRVNEQYLARVLPELCEGPPPSPARKKSSGETDL  605
            +WPGNVRELENVIERAMLSA E+++EH V+E+YLARVLPEL EG P + +RK +S   DL
Sbjct  546  SWPGNVRELENVIERAMLSASEIFHEHGVDEHYLARVLPELFEGQPQPRSRKEPSRTKDL  605

Query  606  HTIGKVAQLRHVKETLESCRGNLDEAARRLGISRTTLWRRLRSA  649
            H+IGK AQLR ++ETL+SC+G+LDEAARRLGISRTTLWRRLRSA
Sbjct  606  HAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLRSA  649

6) B479_13925 in NC_019905


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  858 bits (3248),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 541/644 (85%), Positives = 609/644 (95%), Gaps = 0/644 (0%)

Query  6    SQVVVLISHLQRPQQRSRLAHVVAGLTTDYPDTRIEVLDTSVAEALQTALELEQAGKVDV  65
            SQVVVL+SHLQRP+QRSRLA +VAGL+++YPD +IEVLDTSV+EALQTA +LEQ GK DV
Sbjct  6    SQVVVLVSHLQRPRQRSRLASLVAGLAAGYPDVHIEVLDTSVSEALQTARDLEQRGKADV  65

Query  66   FVCAGATAAYLRKHLTRPVLAMRVGSGDLLRALGQARERSSQVAVLSYNHINHDLQAMAA  125
            FVCAGATAAYLR+HL+RPVL+MRVG+GDLLRAL QARE+SS+VA+LSYN+I++DLQAM +
Sbjct  66   FVCAGATAAYLRRHLARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRT  125

Query  126  LFTVQVHQAAYTSLeearqaveqaaqLGCRSIIGSSTVVGLAEQAGLHGVLSLSEETARK  185
            LFTVQVHQ AYT+LEEARQAV + ++LGCRSIIGSSTVV LAEQAGLHGVLSLSE+TARK
Sbjct  126  LFTVQVHQVAYTTLEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARK  185

Query  186  ALEEALGILDTQRVEIAKRRHLNAVLRHIPAGVAAVDNQGVVQSLNPALAQLLDLPVSAA  245
            ALEEA+G+LD+QR+EIAKRRHL+AVL+HIP+GVAAVDNQGVVQSLNPALAQLL+LPVS+A
Sbjct  186  ALEEAMGVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSA  245

Query  246  LGRPLQQLCPELDMQQALQEGTGEENRVMRLGSHVVVSNLLPILENGERTGLVLTCQDIT  305
            LGRPLQQLCPELD+QQAL++G GEENRV+RLGSH VVSNLLPILENGERTGLVLTCQDIT
Sbjct  246  LGRPLQQLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDIT  305

Query  306  VVQRADQRIRSTRRPGAFTARYRLDQLNGNSKANREMLQLAKRFATSHSTILITGESGTG  365
             VQRADQRIRSTRRPGAFTARYRL+QLNG SKANREMLQLAKRFA+SHSTILITGESGTG
Sbjct  306  AVQRADQRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTG  365

Query  366  KELLAQGIHNESPRRQGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAH  425
            KELLAQGIHNESPRR+GPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAH
Sbjct  366  KELLAQGIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAH  425

Query  426  RGTLFLDEIGDMPVSlqtrllrvlqerevlrlGSTEPIAIDVRIIAATHQDLRSAMDDGD  485
            RGTLFLDEIGDMPVSLQTRLLRVLQEREVLRLG+TEPI+IDVRIIAATH+DL +AM D +
Sbjct  426  RGTLFLDEIGDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDRE  485

Query  486  FRTDLYFRLNILRLQTTPLRERPEDIALICRVISQRLLVQGQPPGAADIPAALLPYLERY  545
            FRTDLY+RLNILRLQTTPLRERPEDI+LIC+ ISQRLLVQGQPPGAA+I + LLPYL R 
Sbjct  486  FRTDLYYRLNILRLQTTPLRERPEDIPLICQGISQRLLVQGQPPGAAGITTLLLPYLVRH  545

Query  546  AWPGNVRELENVIERAMLSARELLEEHRLKEQYLARVLPELCEGPPRSPARKKSPGETDL  605
            +WPGNVRELENVIERAMLSA E+++EH + E+YLARVLPEL EG P++ +RK ++   DL
Sbjct  546  SWPGNVRELENVIERAMLSASEIFHEHGVDEHYLARVLPELFEGQPQPRSRKEPSRTKDL  605

Query  606  HTIGKIAQLRHVKETLESCHGNLDEAARRLGISRTTLWRRLRSA  649
            H+IGK AQLR ++ETL+SC+G+LDEAARRLGISRTTLWRRLRSA
Sbjct  606  HAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLRSA  649

7) prpR in NC_008463


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  731 bits (2765),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 469/473 (99%), Positives = 473/473 (100%), Gaps = 0/473 (0%)

Query  1    MSEDTARKALEEAMGVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQL  60
            +SEDTARKALEEAMGVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQL
Sbjct  178  LSEDTARKALEEAMGVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQL  237

Query  61   LELPVSSALGRPLQQLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGL  120
            LELPVSSALGRPLQQLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGL
Sbjct  238  LELPVSSALGRPLQQLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGL  297

Query  121  VLTCQDITAVQRADQRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTIL  180
            VLTCQDITAVQRADQRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTIL
Sbjct  298  VLTCQDITAVQRADQRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTIL  357

Query  181  ITGESGTGKELLAQGIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGK  240
            ITGESGTGKELLAQGIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGK
Sbjct  358  ITGESGTGKELLAQGIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGK  417

Query  241  PGLFEAAHRGTLFLDEIGDMPVSlqtrllrvlqerevlrlGGTEPISIDVRIVAATHKDL  300
            PGLFEAAHRGTLFLDEIGDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRI+AATHKDL
Sbjct  418  PGLFEAAHRGTLFLDEIGDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDL  477

Query  301  GGAMKDREFRTDLYYRLNILRLQTTPLRERPEDIPLICQGISQRLLVQGQPPGSAGITTL  360
            G+AMKDREFRTDLYYRLNILRLQTTPLRERPEDIPLICQGISQRLLVQGQPPG+AGITTL
Sbjct  478  GAAMKDREFRTDLYYRLNILRLQTTPLRERPEDIPLICQGISQRLLVQGQPPGAAGITTL  537

Query  361  LLPYLVRHSWPGNVRELENVIERAMLSASEIFHEHGVDEHYLARVLPELFEGQPQPRSRK  420
            LLPYLVRHSWPGNVRELENVIERAMLSASEIFHEHGVDEHYLARVLPELFEGQPQPRSRK
Sbjct  538  LLPYLVRHSWPGNVRELENVIERAMLSASEIFHEHGVDEHYLARVLPELFEGQPQPRSRK  597

Query  421  EPSRTKDLHAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLRSAR  473
            EPSRTKDLHAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLRSAR
Sbjct  598  EPSRTKDLHAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLRSAR  650

8) yqiR in NC_018268


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  447 bits (1684),  Expect = 8e-127, Method: Compositional matrix adjust.
 Identities = 305/652 (47%), Positives = 455/652 (70%), Gaps = 15/652 (2%)

Query  5    KRKPL--IVTLINHLTFDGNPSKLARILQEIMPRYEQQADIRIVETSVDKLLETARAIEY  62
             R PL  +V L++HL    + S+LA ++  + + Y  + +I +++TSV   L+TAR +E 
Sbjct  1    MRPPLSQVVVLVSHLQRPRQRSRLASLVAGLAAGY-PDVHIEVLDTSVSEALQTARDLEQ  59

Query  63   EQEADILLCSGASAEFLRKKISTTTLSFRTGEYDLIRALNLAKERGTKAGILTHQHTLKD  122
               AD+++C+GA+A +LR+ ++   L+ R G  DL+RAL+ A+E+++  ++L+ ++  +D
Sbjct  60   RGKADVFVCAGATAAYLRRHLARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRD  119

Query  123  LDELSSLFTVEVSQAVYTSLEDARQKVQTFVEQGYRVIIGSPTVVDLAEAAGAEGVFAIN  182
            L+ + +LFTV+V Q  YT+LE+ARQ V      G R IIGS+TVV+LAE AG +GV++++
Sbjct  120  LQAMRTLFTVQVHQVAYTTLEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLS  179

Query  183  ADAVRRTLDEALAICRSRSQETWKHQRIHSVLKHLNEGVIALDALGTVFSVNTSMNNLLK  242
             D+ R++L+EA+++  S+  E  K++++++VL+H+  GV A+D  G V S+N ++ +LL 
Sbjct  180  EDTARKALEEAMGVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLE  239

Query  243  PIRPIAIGETAAEHFPDVDISKVLSTGTAIENRLSIRGNQRLAISVIPILEEGLVDGAIL  302
               + A+G    +  P++D+ + L  G + ENR+   G++ +  +++PILE+G   G +L
Sbjct  240  LPVSSALGRPLQQLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVL  299

Query  303  TCQEINEIQRAERRLRSQSRPSHFIAKYHFDLILGQDSHFKRAVQLAKLYAHSDSTVLIT  362
            TCQ+I  +QRA++R+RS  RP+ F A+Y+++ + G     +  +QLAK +A S+ST+LIT
Sbjct  300  TCQDITAVQRADQRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILIT  359

Query  363  GESGTGKELFAQSIHNASYRQKMPFVAINCAAFPETLLESELFGYEDGAFTGTRKGGKPG  422
            GESGTGKEL+AQ+IHN S R+  PFVAINCAAFPE+LLESELFGYE+GAF+G+RKGGKPG
Sbjct  360  GESGTGKELLAQGIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPG  419

Query  423  LFEAAHNGTIFLDEIGDMPTHlqtrllrvlqerevlrlGASEPTPLNIRVIAATHQDLQQ  482
            LFEAAH GT+FLDEIGDMP  LQTRLLRVLQEREVLRLG++EP ++++R+IAATH+DL  
Sbjct  420  LFEAAHRGTLFLDEIGDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGA  479

Query  483  QIINKRFREDLYYRLNILRVSVPPLRERTSDINSLMMRISKN-LAQGNVDQEKATNQVLK  541
             + ++ FR DLYYRLNILR+   PLRER  DI  +   IS+  L QG   Q  ++  +  
Sbjct  480  AMKDREFRTDLYYRLNILRLQTTPLRERPEDIPLICQGISQRLLVQG---QPPGAAGITT  536

Query  542  ALTPQLVQHPWKGNIRELENLVERAHLVSQFPNQNHSTEALF-----PELFSDSFNQSVS  596
             L P LV+H+W GN+RELEN++ERA L +    ++H+ +  +     PELF +   Q+ S
Sbjct  537  LLLPYLVRHSWPGNVRELENVIERAMLSASEIFHEHGVDEHYLARVLPELFEGQ-PQPRS  595

Query  597  SKKP--KESLKASGKAAEIVHIQKVLDLHNGDLAKTAKALGISRSTLWRRLR  646
             K P     L A GK+A++  IQ  LD  +G L  +A+ LGISR+TLWRRLR
Sbjct  596  RKEPSRTKDLHAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLR  647

9) prpR in NC_007973


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  435 bits (1637),  Expect = 4e-123, Method: Compositional matrix adjust.
 Identities = 272/634 (43%), Positives = 429/634 (68%), Gaps = 14/634 (2%)

Query  4    SRLSRAFAELIPAYAGRAEFRIVGRAFEAAASAINREARENRVDVVVAGGSNGAYLRQHV  63
            SRL+   A L ++Y++  ++ +++ +   A  +     +  + DV V +G+ +AYLR+H+
Sbjct  22   SRLASLVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRGKADVFVCAGATAAYLRRHL  80

Query  64   DVPVVLVKVTGFDVMSALATARRISPKVALVTHASTYAEVDEFVRAFSLDIPRYTYLTED  123
              PV+ ++V G D++ AL  AR  S+ VAL++      +++     F++++ + +Y T +
Sbjct  81   ARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFTVQVHQVAYTTLE  140

Query  124  DATARVRALKEEGVRVVVGPGLVTDMADKYGLVGVFLYSGNAVRLALEDAIEAARLRRIE  183
            +A   V  +   G R ++G++ V ++A++ GL GV+  S ++ R ALE+A+     +R+E
Sbjct  141  EARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAMGVLDSQRLE  200

Query  184  STRREYVNTILAHLNEGVAAVDGEGRVQAFNPAMERFLGTPAGVAVGRKLSTLAPGLSLD  243
             ++R  ++++L H+  GVAAVD +G VQ++NPA+ ++L  P + A+GR L  L P L L+
Sbjct  201  IAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQQLCPELDLQ  260

Query  244  GVMQSGARELEAIHRLGDKMVVVNRIPIMSEAGTTGAVLTIQDANAIHRADRNLRSRTRA  303
              ++ G+ E + + RLG   VV N +PI+ ++  TG VLT QD  A++RAD+ +RS  R+
Sbjct  261  QALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRADQRIRSTRRP  320

Query  304  RAAGVRYSLDDLAGDSPAMSDLRALARRYAMVDSTVLVSGESGTGKEVLAQGMHDASPRR  363
             A   RY L++L G S A  ++  LA+R+A  +ST+L++GESGTGKE+LAQG+H+ SPRR
Sbjct  321  GAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQGIHNESPRR  380

Query  364  AFPFVAVNCAAFPETLLESELFGYEEGAFTGARRGGKAGLFESAHNGTLFLDEIGDMPPA  423
              PFVA+NCAAFPE+LLESELFGYEEGAF+G+R+GGK+GLFE+AH GTLFLDEIGDMP +
Sbjct  381  HGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMPVS  440

Query  424  LQTRLLRVLQEKQVLPIGAIEAVPVNVRVIAATHRDLAALVRDGAFRQDLYYRLNILRIE  483
            LQTRLLRVLQE++VL +G+ E+++++VR+IAATH+DL+A ++D  FR DLYYRLNILR++
Sbjct  441  LQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLYYRLNILRLQ  500

Query  484  MPPLRDRAGDLPVLAELLYRRAQERLGMSDGEP-----LPAIVRARLARYVWPGNIRELE  538
              PLR+R+ D+P    L+ +   +RL + +G+P     + +++ + L R  WPGN+RELE
Sbjct  501  TTPLRERPEDIP----LICQGISQRL-LVQGQPPGAAGITTLLLPYLVRHSWPGNVRELE  555

Query  539  NVTERIAVLVAGANLTPVALQRE-LQAAVPELFSGDHGTAIEMSDGVPAQSLAGVAKASQ  597
            NV ER A+L A+  +   +++ + L   +PELF G +  +    +   ++ L +++K++Q
Sbjct  556  NVIER-AMLSASEIFHEHGVDEHYLARVLPELFEG-QPQPRSRKEPSRTKDLHAIGKTAQ  613

Query  598  AEHIRRVLADCGGNRAAACAQLGISPTTLWRRLR  631
               I+  L  C G+   A  +LGIS TTLWRRLR
Sbjct  614  LRYIQETLDSCQGSLDEAARRLGISRTTLWRRLR  647

10) PT7_0416 in NC_015458


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  414 bits (1558),  Expect = 7e-117, Method: Compositional matrix adjust.
 Identities = 272/632 (44%), Positives = 425/632 (68%), Gaps = 20/632 (3%)

Query  22   LRALLEELAPGYSSLAEVVILDKAYGDAVESIATLRQASGVDAVVSAGSNGSFLREHLDL  81
            L +L+  LA+GY+ + ++ +LD + ++A+++   L Q +  D  V AG+ +++LR HL  
Sbjct  24   LASLVAGLAAGYPDV-HIEVLDTSVSEALQTARDLEQRGKADVFVCAGATAAYLRRHLAR  82

Query  82   PVVLVKPGGFDVMQGLARASGKARRLAVVTYGAVPSELAHFNERFSLQVELRSYTTEEEA  141
            PV+ ++ GG D++++L +A   + ++A+++Y  +  +L      F++QV+  +YTT EEA
Sbjct  83   PVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFTVQVHQVAYTTLEEA  142

Query  142  EACVQELVASGTEAVVAPGLVVDLARSYGLEGVLLYSRGAVSEAMEGAIEVARIARLEAA  201
               V E+   G  ++++++ VV+LA   GL+GVL  S ++   A+E A+ V    RLE A
Sbjct  143  RQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAMGVLDSQRLEIA  202

Query  202  KREKLSTILGQLKDGVVAVNLDERIETINPEMEAIVGLPAGQLIGQRLGDVSNELSLANT  261
            KR  L ++L ++  GV AV+ +  ++++NP +  ++ LP +  +G+ L ++  EL L ++
Sbjct  203  KRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQQLCPELDLQQA  262

Query  262  LRTGEAtveqvqqvggktvvvtRMPIVEQGRQTGAVLICQDPIAIQRLDRSLRSRAQPGS  321
            L  G +  ++V ++G+ +VV   +PI+E+G +TG VL CQD  A+QR D+ +RS  +PG+
Sbjct  263  LEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRADQRIRSTRRPGA  322

Query  322  HHVRYGLSSLIGQSEALKRVRQRAQTCAQSSATVLIVGESGTGKELLAQGIHNASARQSQ  381
               RY L  L G S A + + Q A+  A S +T+LI GESGTGKELLAQGIHN S+R+  
Sbjct  323  FTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQGIHNESPRRHG  382

Query  382  PFVAINCAAFPEALLESELFGYVDGAFTGSSRGGKVGLFEAAHTGTIFLDEIGDMPLPLQ  441
            PFVAINCAAFPE+LLESELFGY +GAF+GS +GGK GLFEAAH GT+FLDEIGDMP++LQ
Sbjct  383  PFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMPVSLQ  442

Query  442  TRLLRVLQEKEVLRIGATVPTPVDVRVIAATHRNMERQVAQGEFRQDLYYRLNILLVHLP  501
            TRLLRVLQE+EVLR+G+T P ++DVR+IAATH+++   + + EFR DLYYRLNIL ++  
Sbjct  443  TRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLYYRLNILRLQTT  502

Query  502  PLRERLADLPMLARHLADKIAVRLNNRKLADEGLIGMLVGAAQGYGWPGNIRELENLIER  561
            PLRER  D+P++ + +++++ V  + +  +  G+  +L+      +WPGN+RELEN+IER
Sbjct  503  PLRERPEDIPLICQGISQRLLV--QGQPPGAAGITTLLLPYLVRHSWPGNVRELENVIER  560

Query  562  TM-----VFHEPSQDGGPVTREALEEIVPELFSG-------RDVKPSQALRGSRTEAELA  609
            +M     +FHE +     V  + L  ++PELF G       ++   ++ L++    A+L 
Sbjct  561  AMLSASEIFHEHG-----VDEHYLARVLPELFEGQPQPRSRKEPSRTKDLHAIGKTAQLR  615

Query  610  LLRDVLNQCGGNRELAAERLGISRTTLWRKLR  641
             +++ L+ C G+ + AA RLGISRTTLWR+LR
Sbjct  616  YIQETLDSCQGSLDEAARRLGISRTTLWRRLR  647

11) Reut_A1807 in NC_007347


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  408 bits (1537),  Expect = 3e-115, Method: Compositional matrix adjust.
 Identities = 269/645 (42%), Positives = 427/645 (67%), Gaps = 17/645 (2%)

Query  19   SRLQRAFAELIPAYSHLAEFRIVGRAYDSAADAIRREAREGKLDVVVSGGSNGAYLRQHV  78
            SRL    A L ++Y+++ ++ +++ +   A ++ R   + GK DV V +G+ +AYLR+H+
Sbjct  22   SRLASLVAGLAAGYPDV-HIEVLDTSVSEALQTARDLEQRGKADVFVCAGATAAYLRRHL  80

Query  79   DVPVVLVKVTGFDVMSALATARRISPNVALVTHASTYAEVDEFTRAFSLSIPAYTYLTED  138
              PV+ ++V G D++ AL  AR  S++VAL++      +++     F++ +   +Y T +
Sbjct  81   ARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFTVQVHQVAYTTLE  140

Query  139  DATARVQTLKQEGVKVVVGPGLVTDLADRLGLIGVFLYSGNSVRMALEDAIEAARLRRIE  198
            +A   V  + + G + ++G++ V +LA++ GL GV+  S ++ R ALE+A+     +R+E
Sbjct  141  EARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAMGVLDSQRLE  200

Query  199  SGRRDYVNNILAHLNEGVAAVDGEGRIQSFNPAMERFLGTPAASAVGRKLQSLSPGLSLD  258
             ++R  ++ +L H+  GVAAVD +G +QS+NPA+ ++L  P +SA+GR LQ L P L L+
Sbjct  201  IAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQQLCPELDLQ  260

Query  259  DVIQTGAKELEAIQKVGDRMVVVNRIPLANESGTTGALLTLQDATAIQRVDRNLRSRSRT  318
            + ++ G+ E + + ++G + VV N +P+ +++  TG +LT QD TA+QR D+ +RS  R 
Sbjct  261  QALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRADQRIRSTRRP  320

Query  319  RLPGVRYSLEDLAGTSAAMMHVRELARRYASVDSTVLIGGESGTGKEVLAQGMHDASPRR  378
                 RY LE+L G+S A  ++ +LA+R+A+ +ST+LI GESGTGKE+LAQG+H+ SPRR
Sbjct  321  GAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQGIHNESPRR  380

Query  379  AFPFVAVNCAAFPETLLESELFGYEEGAFTGARRGGKAGLFESAHNGTLFLDEVGDMPPA  438
              PFVA+NCAAFPE+LLESELFGYEEGAF+G+R+GGK+GLFE+AH GTLFLDE+GDMP +
Sbjct  381  HGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMPVS  440

Query  439  LQTRLLRVLQEKQVLPIGGLEAVPVNVRVIAATHRDLVQRVSEGTFRQDLYYRLNILRIE  498
            LQTRLLRVLQE++VL +GG E+++++VR+IAATH+DL   + +  FR DLYYRLNILR++
Sbjct  441  LQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLYYRLNILRLQ  500

Query  499  VPPLRARAEDlpelaellyrralerlgleDHEGLPQAARARLAGYHWPGNIRELENVTER  558
              PLR R+ED+P + + + +R L +    +  G+     + L    WPGN+RELENV ER
Sbjct  501  TTPLRERPEDIPLICQGISQRLLVQGQPPGAAGITTLLLPYLVRHSWPGNVRELENVIER  560

Query  559  IAVLVAGrplepaellrelqaaVPELFGDDLGAMPDAAISVDEPVQEPMRGGRQRRVGRS  618
              +  +    E +   + L   +PELF ++    P++            R+ ++    + 
Sbjct  561  AMLSASEIFHEHGVDEHYLARVLPELFEGQ----PQP------------RSRKEPSRTKD  604

Query  619  LAGVAQASEAEHIRRVLAECGGDRNAACHILGISPTTLWRRLRAA  663
            L +++++++   I+  L  C G  + A + LGIS TTLWRRLR+A
Sbjct  605  LHAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLRSA  649

12) prpR in NC_010170


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  402 bits (1512),  Expect = 3e-113, Method: Compositional matrix adjust.
 Identities = 292/617 (48%), Positives = 429/617 (70%), Gaps = 14/617 (2%)

Query  30   VVAEYTGRAHIEVVDGTFGGALAIAQDRLDRGLVDAFVSAGSNASILRAGLQAPVATIQL  89
            + A Y +  HIEV+D + + AL  A+D  +RG  D FV AG+ A+ LR  L  PV T+++
Sbjct  31   LAAGYPD-VHIEVLDTSVSEALQTARDLEQRGKADVFVCAGATAAYLRRHLARPVLTMRV  89

Query  90   GGFDLLQALIQARRIADRVGVVMYGRTIPELDAVKDLLNIEIVQHAYQTPDDARQRFEQL  149
            GG DLL+AL QAR  + +V+++ Y R   +L+A++ L+ +++ Q AY T ++ARQ   ++
Sbjct  90   GGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFTVQVHQVAYTTLEEARQAVLEV  149

Query  150  RRENFQVIVGSSLVVELAEQAGLHGLLAYSLASVRKGFEDAIELARVARLEAGRYEQLNG  209
             R   + I+GSS VVELAEQAGLHG+L+ S  + RK++E+A+ +    RLE ++  +L++
Sbjct  150  SRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAMGVLDSQRLEIAKRRHLDA  209

Query  210  VLHSLQDAVLAVDRDHRIIAVNPSMQRLLDHDAAAMVGQpldrlrpeltlrptldtGQPE  269
            VL+ +  +V AVD +  + ++NP++ +LL+   ++ +G+PL++L PEL L+ +L+ G  E
Sbjct  210  VLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQQLCPELDLQQALEDGGGE  269

Query  270  SAGLLRLGGRDWLANRMPIRERGAVVGAALTLYDAGRIHEADTSLRVQQRRRQNTAKYQF  329
               ++RLG++  ++N +PI E G   G  LT  D   ++ AD  +R  +R    TA+Y++
Sbjct  270  ENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRADQRIRSTRRPGAFTARYRL  329

Query  330  AELIGRSPPFLRAVRTARRYAQTDLTVLIAGESGVGKELFAQAIHNESRRADRPFVAVNC  389
             +L G S +    ++ A+R+A ++ T+LI+GESG GKEL+AQ+IHNES R + PFVA+NC
Sbjct  330  EQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQGIHNESPRRHGPFVAINC  389

Query  390  ASFPESLLESELFGYEEGAFTGSRRGGKRGLFEAAHTGTLFLDEIGDMPLPLQSRLLRVL  449
            A+FPESLLESELFGYEEGAF+GSR+GGK GLFEAAH GTLFLDEIGDMP++LQ+RLLRVL
Sbjct  390  AAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMPVSLQTRLLRVL  449

Query  450  QEREVTRLGATAAIPVDVRIIAATHQPLSDMVAQRRFRQDLYYRINTLRLEVPPLRERPD  509
            QEREV RLG+T +I++DVRIIAATH+ L+  + +R FR DLYYR+N LRL+  PLRERP+
Sbjct  450  QEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLYYRLNILRLQTTPLRERPE  509

Query  510  DIQPLLETLIDRCLRRLGAPLQAAGLVAPWLPRLRRYAWPGNVRELENISERMAVFLMQY  569
            DI PL+   I + L   G P  AAG+ +  LP L R +WPGNVRELEN+ ER  +   + 
Sbjct  510  DI-PLICQGISQRLLVQGQPPGAAGITTLLLPYLVRHSWPGNVRELENVIERAMLSASEI  568

Query  570  PHAADVDHDALRHDCPELFEAGAAVAA--DEGRSQ------RDRALR----ALEACGGNR  617
             H  +VD++ L +  PELFE+ +   +  + +R++      +   LR    +L++C G+ 
Sbjct  569  FHEHGVDEHYLARVLPELFEGQPQPRSRKEPSRTKDLHAIGKTAQLRYIQETLDSCQGSL  628

Query  618  QEAARRLGISRSTLWRW  634
            +EAARRLGISR+TLWR+
Sbjct  629  DEAARRLGISRTTLWRR  645

13) prpR in NC_015726


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  398 bits (1497),  Expect = 5e-112, Method: Compositional matrix adjust.
 Identities = 277/655 (43%), Positives = 439/655 (68%), Gaps = 22/655 (3%)

Query  26   VSTQARPRIWAIGISRLARAFADLIPAYADRAEFRIVGKGFeaaasavarearegrLDVV  85
            VS   RPR +    SRLA   A+L ++Y+D  ++ +++ +   A  +     + G+ DV 
Sbjct  12   VSHLQRPRQR----SRLASLVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRGKADVF  66

Query  86   VAGGSNGAYLRQHVDVPVVLVKVTGFDVMSALATARRISPRVALVTHASTYAEVDEFVRA  145
            V +G+ +AYLR+H+  PV+ ++V G D++ AL  AR  S++VAL++      +++     
Sbjct  67   VCAGATAAYLRRHLARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTL  126

Query  146  FSLLVPAYTYLTEDDAVARVKALKQEGIQVVVGPGLVTDLADRYGLTGVFLYSGNSVRMa  205
            F++ V   +Y T ++A   V  + + G + ++G++ V +LA++ GL GV+  S ++ R A
Sbjct  127  FTVQVHQVAYTTLEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKA  186

Query  206  ledaieaarlrrieatrrdYVNTILAHLNEGVAAVDAEGRIQSFNPAMERFLGTSVAAAV  265
            LE+A+     +R+E ++R  ++++L H+  GVAAVD +G +QS+NPA+ ++L  +V++A+
Sbjct  187  LEEAMGVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSAL  246

Query  266  GRKLQTLAPNLALEGVMQSGDKELEAIHKLGDKMVVVNRIPIIGEAGTTGAVLTIQDASA  325
            GR LQ L P+L L+  ++ G+ E + + +LG   VV N +PI+ ++  TG VLT QD +A
Sbjct  247  GRPLQQLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITA  306

Query  326  IQRVDRNLRSRARTRPAGVRYSLDDLAGTSAAMTELRELARRYAAVDSTVLIGGESGTGK  385
            +QR D+ +RS  R  +   RY L++L G+S A  E+ +LA+R+AA +ST+LI GESGTGK
Sbjct  307  VQRADQRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGK  366

Query  386  EVLAQGMHDASPRRAFPFVAVNCAAFPEALLESELFGYEEGAFTGARRGGKAGLFESAHN  445
            E+LAQG+H+ SPRR  PFVA+NCAAFPE+LLESELFGYEEGAF+G+R+GGK+GLFE+AH 
Sbjct  367  ELLAQGIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHR  426

Query  446  GTLFLDEVGDMPSALQTRLLRVLQEKQVLPIGGLDAVPVNVRVIGATHRDLAAMVRDGSF  505
            GTLFLDE+GDMP +LQTRLLRVLQE++VL +GG ++++++VR+I+ATH+DL+A ++D  F
Sbjct  427  GTLFLDEIGDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREF  486

Query  506  RQDLYYRLNILRIEMPPLRDRSEDLQELAELLYRRAQERLGMDrpqrlpaaararlarY-  564
            R DLYYRLNILR++  PLR+R+ED+     L+ +   +RL ++     +A+  + L  Y 
Sbjct  487  RTDLYYRLNILRLQTTPLRERPEDIP----LICQGISQRLLVQGQPPGAAGITTLLLPYL  542

Query  565  ---RWPGNIRELENVTERIAVLVAGRRLDSDALQRE-LQAAVPELFGDGMLapaeadaeh  620
                WPGN+RELENV ER A+L A+  ++ ++++ + L   +PELF +           +
Sbjct  543  VRHSWPGNVRELENVIER-AMLSASEIFHEHGVDEHYLARVLPELFEG-------QPQPR  594

Query  621  aapaTRPRRSLAGVKQSSEVEHIRRVLAECGGDRAAACHILGISPTTLWRRLKAA  675
            +       + L ++ +++++  I+  L  C G    A + LGIS TTLWRRL++A
Sbjct  595  SRKEPSRTKDLHAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLRSA  649

14) prpR in NC_008313


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  397 bits (1493),  Expect = 1e-111, Method: Compositional matrix adjust.
 Identities = 277/659 (43%), Positives = 438/659 (67%), Gaps = 26/659 (3%)

Query  26   VSTQARPRIWAIGISRLARAFADLIPAYADRAEFRIVGKGFeaaasavarearegrLDVV  85
            VS   RPR +    SRLA   A+L ++Y+D  ++ +++ +   A  +     + G+ DV 
Sbjct  12   VSHLQRPRQR----SRLASLVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRGKADVF  66

Query  86   VAGGSNGAYLRQHVDVPVVLVKVTGFDVMSALATARRISPRVALVTHASTYAEVDEFVRA  145
            V +G+ +AYLR+H+  PV+ ++V G D++ AL  AR  S++VAL++      +++     
Sbjct  67   VCAGATAAYLRRHLARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTL  126

Query  146  FSLSVPAYTYLTEDDAVARVKALKQEGIQVVVGPGLVTDLADRYGLTGVFLYSGNSVRMa  205
            F++ V   +Y T ++A   V  + + G + ++G++ V +LA++ GL GV+  S ++ R A
Sbjct  127  FTVQVHQVAYTTLEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKA  186

Query  206  ledaieaarlrrieatrrdYVNTILAHLNEGVAAVDAEGRIQSFNPAMERFLGTSVAAAV  265
            LE+A+     +R+E ++R  ++++L H+  GVAAVD +G +QS+NPA+ ++L  +V++A+
Sbjct  187  LEEAMGVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSAL  246

Query  266  GRKLQTLAPNLALEGVMQSGDKELEAIHKLGDKMVVVNRIPIIGEAGTTGAVLTIQDASA  325
            GR LQ L P+L L+  ++ G+ E + + +LG   VV N +PI+ ++  TG VLT QD +A
Sbjct  247  GRPLQQLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITA  306

Query  326  IQRVDRNLRSRARTRPAGVRYSLDDLAGTSAAMTELRELARRYAAVDSTVLIGGESGTGK  385
            +QR D+ +RS  R  +   RY L++L G+S A  E+ +LA+R+AA +ST+LI GESGTGK
Sbjct  307  VQRADQRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGK  366

Query  386  EVLAQGMHDASPRRAFPFVAVNCAAFPEALLESELFGYEEGAFTGARRGGKAGLFESAHN  445
            E+LAQG+H+ SPRR  PFVA+NCAAFPE+LLESELFGYEEGAF+G+R+GGK+GLFE+AH 
Sbjct  367  ELLAQGIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHR  426

Query  446  GTLFLDEVGDMPSALQTRLLRVLQEKQVLPIGGLDAVPVNVRVIGATHRDLAAMVRDGSF  505
            GTLFLDE+GDMP +LQTRLLRVLQE++VL +GG ++++++VR+I+ATH+DL+A ++D  F
Sbjct  427  GTLFLDEIGDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREF  486

Query  506  RQDLYYRLNILRIEMPPLRDRSEDLQELAELLYRRAQERLGMDrpqrlpaaararlarY-  564
            R DLYYRLNILR++  PLR+R+ED+     L+ +   +RL ++     +A+  + L  Y 
Sbjct  487  RTDLYYRLNILRLQTTPLRERPEDIP----LICQGISQRLLVQGQPPGAAGITTLLLPYL  542

Query  565  ---RWPGNIRELENVTERIAVLVAGRRLDSEALQRE-LQAAVPELFGDGMLapaeaeaea  620
                WPGN+RELENV ER A+L A+  ++ ++++ + L   +PELF +            
Sbjct  543  VRHSWPGNVRELENVIER-AMLSASEIFHEHGVDEHYLARVLPELFEG-----------Q  590

Query  621  daepaapaTRPRRSLAGVKQSSEVEHIRRVLAECGGDRAAACHILGISPTTLWRRLKAA  679
                +       + L ++ +++++  I+  L  C G    A + LGIS TTLWRRL++A
Sbjct  591  PQPRSRKEPSRTKDLHAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLRSA  649

15) prpR in NC_010528


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  377 bits (1417),  Expect = 1e-105, Method: Compositional matrix adjust.
 Identities = 279/658 (43%), Positives = 438/658 (67%), Gaps = 25/658 (3%)

Query  5    VSTQGRPRIWAIGISRLARAFADLIPAYADRAEFRIVGKGFEAAASAVSREVREGRLDVV  64
            VS   RPR +    SRLA   A+L ++Y+D  ++ +++ +   A  +     + G+ DV 
Sbjct  12   VSHLQRPRQR----SRLASLVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRGKADVF  66

Query  65   VAGGSNGAYLRQHVDVPVVLVKVTGFDVMSALATARRISPRVALVTHAATYAEVDEFVRA  124
            V +G+ +AYLR+H+  PV+ ++V G D++ AL  AR  S++VAL++      +++     
Sbjct  67   VCAGATAAYLRRHLARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTL  126

Query  125  FSLSVPAYTYLTEDDAVARVKALKQEGIQVVVGPGLVTDLADRYGLTGVFLYSGNSVRMa  184
            F++ V   +Y T ++A   V  + + G + ++G++ V +LA++ GL GV+  S ++ R A
Sbjct  127  FTVQVHQVAYTTLEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKA  186

Query  185  ledaieaarlrrieatrrdYVNTILAHLNEGVAAVDAQGRIQSFNPAMERFLGTSAAAAV  244
            LE+A+     +R+E ++R  ++++L H+  GVAAVD QG +QS+NPA+ ++L  + ++A+
Sbjct  187  LEEAMGVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSAL  246

Query  245  GRKLQTLAPSLALEGVMQSGDKELEAIHKLGDKMVVVNRIPILSEAGTAGAVLTIQDASA  304
            GR LQ L P L L+  ++ G+ E + + +LG   VV N +PIL ++  +G VLT QD +A
Sbjct  247  GRPLQQLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITA  306

Query  305  IQrvdrnlrsrsrarpaavrysLDDLAGTSAAMTALRELARRYAAVDSTVLIGGESGTGK  364
            +QR D+ +RS  R+ + + RY L++L G+S A   + +LA+R+AA +ST+LI GESGTGK
Sbjct  307  VQRADQRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGK  366

Query  365  EVLAQGMHDASPRRAFPFVAVNCAAFPEALLESELFGYEEGAFTGARRGGKAGLFESAHN  424
            E+LAQG+H+ SPRR  PFVA+NCAAFPE+LLESELFGYEEGAF+G+R+GGK+GLFE+AH 
Sbjct  367  ELLAQGIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHR  426

Query  425  GTLFLDEVGDMPPALQTRLLRVLQEKQVLPIGGLDAVPVNVRVIAATHRDLAAMVRDGTF  484
            GTLFLDE+GDMP +LQTRLLRVLQE++VL +GG ++++++VR+IAATH+DL+A ++D  F
Sbjct  427  GTLFLDEIGDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREF  486

Query  485  RQDLYYRLNILRIAMPPLRERAEDLPELAELLYRRAQDRLGLErpqrlpaaararlarY-  543
            R DLYYRLNILR+   PLRER+ED+P    L+ +   +RL ++     +A+  + L  Y 
Sbjct  487  RTDLYYRLNILRLQTTPLRERPEDIP----LICQGISQRLLVQGQPPGAAGITTLLLPYL  542

Query  544  ---RWPGNIRELENVTERIAVLVAGRRLDGEALQRE-LHAAAPELFGDaalatapaggpe  599
                WPGN+RELENV ER A+L A+  ++ ++++ + L    PELF +            
Sbjct  543  VRHSWPGNVRELENVIER-AMLSASEIFHEHGVDEHYLARVLPELFEG----------QP  591

Query  600  aapaapaararrslarVKQSSEVDHIRRVLEECGGDRTAACHILGISPTTLWRRLKAA  657
             + +   +   + L  + +++++  I+  L+ C G    A + LGIS TTLWRRL++A
Sbjct  592  QPRSRKEPSRTKDLHAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLRSA  649

16) Bphy_6705 in NC_010625


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  373 bits (1401),  Expect = 2e-104, Method: Compositional matrix adjust.
 Identities = 258/640 (41%), Positives = 415/640 (65%), Gaps = 24/640 (3%)

Query  30   SRLRDLFVDIASEYAARADLRVVARGFDDAVQ---EIEAAGSELPDVIVAGGSNGAYLKT  86
            SRL  L  ++A+ Y+   ++ V+  +  +A+Q   ++E  G   +DV+V +G+ +AYL+ 
Sbjct  22   SRLASLVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRGK--ADVFVCAGATAAYLRR  78

Query  87   RVSVPVVVIAPTGFDVMQALARARRDGNSVALVTHGDTPDEVKRFASAYGIDVIFASYRS  146
            +++ PV+ +   G D+++AL +AR +++ VAL++      +++   + + ++V   +Y +
Sbjct  79   HLARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFTVQVHQVAYTT  138

Query  147  TEDAEDCVRELRERGVDAVVGPGHVTDLAERAGMGAVFLYSRASVRSAFDTALEVAHATR  206
             E+A + V E+   G  +++G++ V +LAE+AG+ +V+  S  + R A++ A+ V ++ R
Sbjct  139  LEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAMGVLDSQR  198

Query  207  AEGMRRQRLDNLLQHLRDGVVALDAQGRVEAINRRLAGVLGIDAASAAGSPLEQLAPDIA  266
             E  +R++LD +LQH+  GV A+D QG V+++N  LA +L +  +SA G PL+QL P++ 
Sbjct  199  LEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQQLCPELD  258

Query  267  --GALPDNDGDTLVSVRGTSYLVHRG--PLAGADSSAGTVLTFQESRAVERLDRTLRSRQ  322
               AL D +G+    +R  S  V     P+   +  +G VLT Q+  AV+R D+ +RS +
Sbjct  259  LQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRADQRIRSTR  318

Query  323  RAQQLTARYQLDDLVGECPSIERVRMLVRRYAKSDATVLILGESGTGKEMVAQSMHQLSA  382
            R+  +TARY+L++L G   +   +  L +R+A S++T+LI GESGTGKE++AQ++H+ S+
Sbjct  319  RPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQGIHNESP  378

Query  383  RRDFAFVAINCGAFPEALLESELFGYEEGAFTGARKGGKAGLIEAAHRGTLFLDEIGEMP  442
            RR+ +FVAINC+AFPE+LLESELFGYEEGAF+G+RKGGK+GL+EAAHRGTLFLDEIG+MP
Sbjct  379  RRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMP  438

Query  443  LPLQSRLLRVLQEREVVRLGSTEPTRVDIRVVAATHRALTEGIGDGTFRADLYYRLNILS  502
            ++LQ+RLLRVLQEREV+RLG+TEP  +D+R++AATH+ L  ++ D  FR+DLYYRLNIL 
Sbjct  439  VSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLYYRLNILR  498

Query  503  IALPPLRERTTDVlplaaqlllqaaareprlaaRVGDLPAATRVLAQIGEPLRGYAWPGN  562
            +   PLRER  D+  +   +  +   +        G+ P+A+ + + +   L   +WPGN
Sbjct  499  LQTTPLRERPEDIPLICQGISQRLLVQ--------GQPPGAAGITTLLLPYLVRHSWPGN  550

Query  563  VRELQNVIERIAVELADT-EDDTFTREMLDVVAPELFASSKPQKKGTLTLRERSRHVEAD  621
            VREL+NVIER  +  ++  +++    + L  V PELF +    +      R +  H  + 
Sbjct  551  VRELENVIERAMLSASEIFHEHGVDEHYLARVLPELFEGQPQPRSRKEPSRTKDLHAIGK  610

Query  622  E-----IRAMLAVCGGDRDAACRALGISKTTLWRKLNATQ  656
                  I+  L  C G  D A R LGIS+TTLWR+L +++
Sbjct  611  TAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLRSAR  650

17) A2cp1_0387 in NC_011891


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  372 bits (1398),  Expect = 3e-104, Method: Compositional matrix adjust.
 Identities = 298/634 (48%), Positives = 437/634 (69%), Gaps = 18/634 (2%)

Query  25   VAPLMADVAEVR--VFDKGFEEALQVARELRQAGEEVDAFVAAGTNGAYLRDHadvpvvv  82
            VA L A+ ++V+  V+D +  EALQ AR+L Q G   D FV AG+ +AYLR H   PV+ 
Sbjct  28   VAGLAAGYPDVHIEVLDTSVSEALQTARDLEQRGKA-DVFVCAGATAAYLRRHLARPVLT  86

Query  83   vtastvdaLQALVQARKLSKRIGVVNFRRTVAGLEGVHLIDDTVIEQRPYVTPEEGQAAV  142
            +  +  D L+AL QAR  S +++++++ R   +L++++ +    ++Q +Y T EE++ AV
Sbjct  87   MRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFTVQVHQVAYTTLEEARQAV  146

Query  143  DDLSARGFKVIVGPGPICSVAERSGLRAVLLYGQDSLEEAIRQAAEVARIARVEGSRRTH  202
             ++S  G + I+G++ +  +AE++GL++VL  ++D+   A+ +A  V    R+E ++R H
Sbjct  147  LEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAMGVLDSQRLEIAKRRH  206

Query  203  LQAMFQHLEVGVVAVDTEERIQAINPALQRLLGVTAAEVQGRKLSAVAPELAMGPVLEGG  262
            L+A++QH+  GV AVD +  +Q++NPAL +LL +  +   GR L  + PEL +   LE+G
Sbjct  207  LDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQQLCPELDLQQALEDG  266

Query  263  PPEVEAVQRIGVAAAVVSRFPLHEHGVLRGAVLTCQPAAMVQRLERGLRSTHRPPRFVAR  322
              E + V R+G  A V + +P+ E+G   G VLTCQ  + VQR ++ +RST+RP  F AR
Sbjct  267  GGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRADQRIRSTRRPGAFTAR  326

Query  323  YALSGLVGESPAMVRLRELAGRYARTDATVLITGESGTGKEMVAQGIHGASRRRDRPFVA  382
            Y L  L G S A   + +LA R+A +++T+LITGESGTGKE++AQGIH  S RR+ PFVA
Sbjct  327  YRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQGIHNESPRRHGPFVA  386

Query  383  VNCAAFPETLLEAELFGYEEGAFTGSRRGGRPGLFEAAHTGTLFLDEIGDVPvtlqtrll  442
            +NCAAFPE+LLE+ELFGYEEGAF+GSR+GG+PGLFEAAH GTLFLDEIGD+PV+LQTRLL
Sbjct  387  INCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMPVSLQTRLL  446

Query  443  rvlqerqvlrlGSNDPTPVDVRVIAATHRDLRQAIARGEFREDLYYRLDILPLHLPPLRE  502
            RVLQER+VLRLG+ +P ++DVR+IAATH+DL  A+   EFR DLYYRL+IL L+  PLRE
Sbjct  447  RVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLYYRLNILRLQTTPLRE  506

Query  503  RGEADVELIASDLLKRALLRHGAADAHRRALSMVLPRLRGHAWPGNVRELENVLERVAV-  561
            R E D+ LI  ++ +R LL +G + +     +++LP L  H+WPGNVRELENV+ER  + 
Sbjct  507  RPE-DIPLICQGISQR-LLVQGQPPGAAGITTLLLPYLVRHSWPGNVRELENVIERAMLS  564

Query  562  ---LFADRDPRARVTEEELAAVMpevadptaraaaptapsavappIDLR-LARAAQERVL  617
               +F +++    V E+ LA V+PE+ +  +++ +   PS      DL+ ++++AQ R  
Sbjct  565  ASEIFHEHG----VDEHYLARVLPELFEGQPQPRSRKEPSRTK---DLHAIGKTAQLR-Y  616

Query  618  IERTVAECGGNQAEAARRLGIGRTTLYRKLGRVR  651
            I+ T+  C G+  EAARRLGI+RTTL R+L   R
Sbjct  617  IQETLDSCQGSLDEAARRLGISRTTLWRRLRSAR  650

18) prpR in NC_017575


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  369 bits (1387),  Expect = 3e-103, Method: Compositional matrix adjust.
 Identities = 269/651 (42%), Positives = 426/651 (66%), Gaps = 29/651 (4%)

Query  52   PRPRIWACGISRLSDLFLDIAAEYNDRAELRVITRGFEDIV---REIDTAGAERPDVVVA  108
             RPR +    SRL+ L  ++AA Y D  ++ V+  +  + +   R+++  G  ++DV V 
Sbjct  16   QRPRQR----SRLASLVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRG--KADVFVC  68

Query  109  GGSNGAYLKPRLSLPVVVINPTGFDVMHALARARRDAESVALVTHGDTPDEVRRFVAAYG  168
            +G+ +AYL+ +L+ PV+ +   G D+++AL +AR ++  VAL++      +++   + + 
Sbjct  69   AGATAAYLRRHLARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFT  128

Query  169  MEVVFASYESRQDAESRVLDLRDRGVGAVVGPGLVTDLAAQAGMHAVFLYSRDSVRAAFD  228
            ++V   +Y + ++A   VL++   G  +++G++ V +LA QAG+H+V+  S D+ R A++
Sbjct  129  VQVHQVAYTTLEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALE  188

Query  229  TALEVVqatrreaqrrqrLDNLLQHLRDGVVALDAQGRVEAINQRLATALGIDAKQAAGQ  288
             A+ V+++ R E  +R++LD +LQH+  GV A+D QG V+++N  LA  L +    A G+
Sbjct  189  EAMGVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGR  248

Query  289  PLLDIAP--NLLGLLPDADGDMLGTVRGVSYVIHRGPLASTGAGAADGTVFTFQESRAVE  346
            PL ++ P  +L   L D++G+    +R  S  +    L+    G   G V+T Q+  AV+
Sbjct  249  PLQQLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQ  308

Query  347  RLDRTLRSGQRAPQFTARYRLDDLVGTSAPMERVRTLVRRYAKSDATVLVLGESGTGKEM  406
            R D+ +RS +R+  FTARYRL++L G+S +   +  L +R+A S++T+L+ GESGTGKE+
Sbjct  309  RADQRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKEL  368

Query  407  VAQGMHQLSARRDFPFVAINCGAFPEALLESELFGYEEGAFTGARKGGKAGLIEAAHRGT  466
            +AQG+H+ S+RR+ PFVAINC+AFPE+LLESELFGYEEGAF+G+RKGGK+GL+EAAHRGT
Sbjct  369  LAQGIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGT  428

Query  467  LFLDEIGEMPLPLQSRLLRVLQEREVVRLGSTEPTRVDIRVVAATHRALTDAVEAGTFRA  526
            LFLDEIG+MP++LQ+RLLRVLQEREV+RLG+TEP  +D+R++AATH+ L  A+    FR+
Sbjct  429  LFLDEIGDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRT  488

Query  527  DLYYRLNILSIALPPLRDRPGDVMPLAADLLVQAARREPRLLLGIPDTEVAARALAGVAD  586
            DLYYRLNIL +   PLR+RP D+ PL  + + Q      RLL  + +   +A +++ +  
Sbjct  489  DLYYRLNILRLQTTPLRERPEDI-PLICQGISQ------RLL--VQGQPPGAAGITTLLL  539

Query  587  P-LRRYAWPGNVRELQSVIERIAVELADADDTGAGTVTHDVLRAIAPEVFA--QAARGKK  643
            P L R +WPGNVREL++VIER    L+ ++      V ++ L  + PE+F     +R++K
Sbjct  540  PYLVRHSWPGNVRELENVIERAM--LSASEIFHEHGVDEHYLARVLPELFEGQPQPRSRK  597

Query  644  A---TLTLRERSRGaeaeairtalaaHGGDRDAVCAALGISKTTLWRRLNA  691
                T  L+  ++ A+   I+ +L +  G  D     LGIS+TTLWRRL +
Sbjct  598  EPSRTKDLHAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLRS  648

19) RPSI07_mp0088 in NC_014310


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  367 bits (1381),  Expect = 7e-103, Method: Compositional matrix adjust.
 Identities = 261/640 (41%), Positives = 414/640 (65%), Gaps = 31/640 (4%)

Query  19   SRLSDLFLDIAAEYNDRAELRVITRGFEDIV---REIETAGAERPDVVVAGGSNGAYLKP  75
            SRL+ L  ++AA Y D  ++ V+  +  + +   R++E  G  ++DV V +G+ +AYL+ 
Sbjct  22   SRLASLVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRG--KADVFVCAGATAAYLRR  78

Query  76   RLSLPVVVINPTGFDVMHALARARREAESVALVTHGDTPDEVRRFVAAYGMDVVFASYAS  135
            +L+ PV+ +   G D+++AL +AR ++  VAL++      +++   + + ++V   +Y++
Sbjct  79   HLARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFTVQVHQVAYTT  138

Query  136  RQDAESCVLDLRDRGVGAVVGPGLVTDLAAQAGMNAVFLYSRDSVRAAFDTALEVVQATR  195
             ++A   VL++   G  +++G++ V +LA QAG+++V+  S D+ R A++ A+ V+++ R
Sbjct  139  LEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAMGVLDSQR  198

Query  196  RETLRRQRLDNLLQHLRDGVVALDARGRIEAINQRLATALGIDARQAAGQPLLDIAP--N  253
             E  +R++LD +LQH+  GV A+D +G ++++N  LA  L +    A G+PL ++ P  +
Sbjct  199  LEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQQLCPELD  258

Query  254  llgllpdtdgdtlgtVRGVSYVIHRG--PLASTGAADGTVFTFQESRAVERLDRTLRSGQ  311
            L   L D +G+    +R  S  +     P+   G   G V+T Q+  AV+R D+ +RS +
Sbjct  259  LQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRADQRIRSTR  318

Query  312  RAQQFTARYRLDDLIGTSAPMERVRTLVRRYARSDATVLVLGESGTGKEMVAQGMHQLSA  371
            R+  FTARYRL++L G+S +   +  L +R+A S++T+L+ GESGTGKE++AQG+H+ S+
Sbjct  319  RPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQGIHNESP  378

Query  372  RRDFPFVAINCGAFPEALLESELFGYEEGAFTGARKGGKTGLIEAAHRGTLFLDEIGEMP  431
            RR+ PFVAINC+AFPE+LLESELFGYEEGAF+G+RKGGK GL+EAAHRGTLFLDEIG+MP
Sbjct  379  RRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMP  438

Query  432  LPLQSRLLRVLQEREVVRLGSTEPTRVDIRVVAATHCALTDAVAAGTFRADLYYRLNILS  491
            ++LQ+RLLRVLQEREV+RLG+TEP  +D+R++AATH  L  A+    FR+DLYYRLNIL 
Sbjct  439  VSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLYYRLNILR  498

Query  492  IALPPLRERPGDVMPLAAELLVQAARREPRLLLRIPDTEVAARVFAGIGEPLRGY----A  547
            +   PLRERP D+ PL  + + Q      RLL++           AGI   L  Y    +
Sbjct  499  LQTTPLRERPEDI-PLICQGISQ------RLLVQGQPPGA-----AGITTLLLPYLVRHS  546

Query  548  WPGNVRELQSVIERIAVELADEEEAGAITREALRAIAPEVFASAP-----RDKTAALTLR  602
            WPGNVREL++VIER  +  ++  +  ++  + L  + PE+F + P     ++ + +  L+
Sbjct  547  WPGNVRELENVIERAMLSASEIFHEHGVDEHYLARVLPELFEGQPQPRSRKEPSRTKDLH  606

Query  603  ERSRGVEAEEIRAALAAHGGDRDAVCAALGISKTTLWRRL  642
              ++  +   I+ +L +  G  D     LGIS+TTLWRRL
Sbjct  607  AIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRL  646

20) MYA_3316 in NC_017921


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  366 bits (1375),  Expect = 2e-102, Method: Compositional matrix adjust.
 Identities = 263/643 (41%), Positives = 415/643 (65%), Gaps = 25/643 (3%)

Query  26   SRLRDLFREIAGEFDERADVRIVTRAYEDALSAIAE-AGTARPDVIVAAGSNGGFLKTRA  84
            SRL  L   +A+ + +  ++ ++  +  +AL +  +    +++DV+V AG+ +++L+ + 
Sbjct  22   SRLASLVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRGKADVFVCAGATAAYLRRHL  80

Query  85   QVPVVVVSPTGFDVMQALARARRDATRIALVSAGETPPEVRRFVAAYGLDVQFASYQSAQ  144
              PV+ +   G D+++AL +AR +++++AL+S      +++   + + ++V+  +Y + +
Sbjct  81   ARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFTVQVHQVAYTTLE  140

Query  145  EAEACVHDLHDRGIETIVGPGLVTDLAASAGMGAVFLYSHASVRQAVETALEVAYATHAE  204
            EA   V ++   G  +I+G++ V +LA  AG+ +V+  S+ + R+A+E A+ V  + + E
Sbjct  141  EARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAMGVLDSQRLE  200

Query  205  AFRRQRLDNLLQHLRDGVVALDARGRVEAINERLASALGVEPAAAVGRALVDLRPEL---  261
              +R++LD +LQH+  GV A+D +G V+++N  LA  L +  ++A+GR+L +L PEL   
Sbjct  201  IAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQQLCPELDLQ  260

Query  262  RTLRGEDGDALATVRGVRYVVHRG--PLVDRGVTSGSVLTFQESRAVERLDRALRSQPNT  319
            ++L + +G+    +R     V     P+++ G  +G VLT Q+  AV+R D+ +RS    
Sbjct  261  QALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRADQRIRSTRRP  320

Query  320  QQFAARYTLDDVIGASAPMARVRDLVRRYAKSDATVLVLGESGTGKEMIAQSLHALSARR  379
              F+ARY L+++ GAS +   + +L +R+A S++T+L+ GESGTGKE++AQ++H  S+RR
Sbjct  321  GAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQGIHNESPRR  380

Query  380  NYPFVAVNCGAFPEALLESELFGYEEGAFTGARRGGKTGLFEAAHRGTLFLDEIGEMPPS  439
            + PFVA+NC+AFPE+LLESELFGYEEGAF+G+R+GGK GLFEAAHRGTLFLDEIG+MP S
Sbjct  381  HGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMPVS  440

Query  440  LQSRLLRVLQEREVIRLGSTEPIRIDVRVIAATHRPLLAAVEAGTFRADLYYRLNILNVG  499
            LQ+RLLRVLQEREV+RLG+TEPI IDVR+IAATH+ L AA+    FR+DLYYRLNIL + 
Sbjct  441  LQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLYYRLNILRLQ  500

Query  500  LPPLRERAADIPalaatllvqaaqREPRLAERMREPGDALRVLGATQSTLARYRWPGNVR  559
              PLRER+ DIP +   +         RL  + + PG A  +     + L R  WPGNVR
Sbjct  501  TTPLRERPEDIPLICQGI-------SQRLLVQGQPPGAA-GITTLLLPYLVRHSWPGNVR  552

Query  560  ELQNVIERIAVELAEEADENDLTAACPALAPDALRAIAPELFAA---PVEaaddddaRTL  616
            EL+NVIER  +  +E  +E+++           L  + PELF +   P    +   ++ L
Sbjct  553  ELENVIERAMLSASEIFHEHGVDEHY-------LARVLPELFEGQPQPRSRKEPSRTKDL  605

Query  617  HarrrraeadeiraVLDACGGDRDRACAMLGISKTTLWRKLSG  659
            HA  + A+   I+  LD+C G  D A   LGIS+TTLWR+L +
Sbjct  606  HAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLRS  648

21) Bcep1808_3681 in NC_009255


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  366 bits (1375),  Expect = 2e-102, Method: Compositional matrix adjust.
 Identities = 263/643 (41%), Positives = 415/643 (65%), Gaps = 25/643 (3%)

Query  26   SRLRDLFREIAGEFDERADVRIVTRAYEDALSAIAE-AGTARPDVIVAAGSNGGFLKTRA  84
            SRL  L   +A+ + +  ++ ++  +  +AL +  +    +++DV+V AG+ +++L+ + 
Sbjct  22   SRLASLVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRGKADVFVCAGATAAYLRRHL  80

Query  85   QVPVVVVSPTGFDVMQALARARRDATRIALVSAGETPPEVRRFVAAYGLDVQFASYQSAQ  144
              PV+ +   G D+++AL +AR +++++AL+S      +++   + + ++V+  +Y + +
Sbjct  81   ARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFTVQVHQVAYTTLE  140

Query  145  EAEACVHDLHDRGIETIVGPGLVTDLAASAGMGAVFLYSHASVRQAVETALEVAYATHAE  204
            EA   V ++   G  +I+G++ V +LA  AG+ +V+  S+ + R+A+E A+ V  + + E
Sbjct  141  EARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAMGVLDSQRLE  200

Query  205  AFRRQRLDNLLQHLRDGVVALDARGRVEAINERLASALGVEPAAAVGRALVDLRPEL---  261
              +R++LD +LQH+  GV A+D +G V+++N  LA  L +  ++A+GR+L +L PEL   
Sbjct  201  IAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQQLCPELDLQ  260

Query  262  RTLRGEDGDALATVRGVRYVVHRG--PLVDRGVTSGSVLTFQESRAVERLDRALRSQPNT  319
            ++L + +G+    +R     V     P+++ G  +G VLT Q+  AV+R D+ +RS    
Sbjct  261  QALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRADQRIRSTRRP  320

Query  320  QQFAARYTLDDVIGASAPMARVRDLVRRYAKSDATVLVLGESGTGKEMIAQSLHALSARR  379
              F+ARY L+++ GAS +   + +L +R+A S++T+L+ GESGTGKE++AQ++H  S+RR
Sbjct  321  GAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQGIHNESPRR  380

Query  380  NYPFVAVNCGAFPEALLESELFGYEEGAFTGARRGGKTGLFEAAHRGTLFLDEIGEMPPS  439
            + PFVA+NC+AFPE+LLESELFGYEEGAF+G+R+GGK GLFEAAHRGTLFLDEIG+MP S
Sbjct  381  HGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMPVS  440

Query  440  LQSRLLRVLQEREVIRLGSTEPIRIDVRVIAATHRPLLAAVEAGTFRADLYYRLNILNVG  499
            LQ+RLLRVLQEREV+RLG+TEPI IDVR+IAATH+ L AA+    FR+DLYYRLNIL + 
Sbjct  441  LQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLYYRLNILRLQ  500

Query  500  LPPLRERAADIPalaatllvqaaqREPRLAERMREPGDALRVLGATQSTLARYRWPGNVR  559
              PLRER+ DIP +   +         RL  + + PG A  +     + L R  WPGNVR
Sbjct  501  TTPLRERPEDIPLICQGI-------SQRLLVQGQPPGAA-GITTLLLPYLVRHSWPGNVR  552

Query  560  ELQNVIERIAVELAEEADENDLTAACPALAPDALRAIAPELFAA---PVEaaddddaRTL  616
            EL+NVIER  +  +E  +E+++           L  + PELF +   P    +   ++ L
Sbjct  553  ELENVIERAMLSASEIFHEHGVDEHY-------LARVLPELFEGQPQPRSRKEPSRTKDL  605

Query  617  HarrrraeadeiraVLDACGGDRDRACAMLGISKTTLWRKLSG  659
            HA  + A+   I+  LD+C G  D A   LGIS+TTLWR+L +
Sbjct  606  HAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLRS  648

22) BUPH_00284 in NC_018672


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  365 bits (1370),  Expect = 5e-102, Method: Compositional matrix adjust.
 Identities = 263/637 (42%), Positives = 427/637 (68%), Gaps = 11/637 (1%)

Query  24   SRLQSLCETIAPRYAEHARFFSIREGYGAAVTALQSYVDAGSVDVVLAAGSNGAYLRDNL  83
            SRL SL   +A+ Y++  ++  +  + + A+ + +   + G  DV + AG+ +AYLR +L
Sbjct  22   SRLASLVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRGKADVFVCAGATAAYLRRHL  80

Query  84   SVPVVMVKVNGFDVLSAITYATTTWPGAPIGLVLHETISHELADLGGLLTVRLTQRAYRS  143
            + PV+ ++V G D+L A+  A     ++ ++L+  + I ++L  +  L+TV++ Q AY +
Sbjct  81   ARPVLTMRVGGGDLLRALEQARE--HSSHVALLSYNRIDRDLQAMRTLFTVQVHQVAYTT  138

Query  144  VDEVKTAVNNLAAEGCRVIIGPGMACDLAQQAGLASVFLYSLGAVEEAFERSVELARVSR  203
            ++E + AV +++  GCR IIG++   +LA+QAGL +V+  S ++   A+E ++ +    R
Sbjct  139  LEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAMGVLDSQR  198

Query  204  QKESKRVRLNTIVAHLRDGVAAFDDAGQLEAVNPAMLELLGLEGGRDMPAQLARRVGPW-  262
               +KR +L++++ H+  GVAA D+ G ++++NPA+ +LL L  +  +   L +      
Sbjct  199  LEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQQLCPELD  258

Query  263  LRDALERGGAVDERIEQIGQRSLIVNCVPIVEQGARSGAVVTVQDALVAQRIDRSLRTSQ  322
            L++ALE GG+ ++R+ ++G ++++ N +PI+E+G R+G V+T QD    QR D+ +R+++
Sbjct  259  LQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRADQRIRSTR  318

Query  323  RPKHLVARHRLEDLVGASAALERVRRLAHAGAAHDATVLLSGESGTGKELVAQGIHNASR  382
            RP  + AR RLE+L GAS A   + +LA   AA ++T+L++GESGTGKEL+AQGIHN S 
Sbjct  319  RPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQGIHNESP  378

Query  383  RRGNPFVAFNCAALPEGLIESELFGHEEGAFTGARRGGKPGLFEIAHTGTIFLDEIGEMP  442
            RR  PFVA+NCAA+PE+L+ESELFG EEGAF+G+R+GGKPGLFE AH GT+FLDEIG+MP
Sbjct  379  RRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMP  438

Query  443  AALQSRLLRVLQEREVMKLGSGRATPVDVRVIAATHRDLPALVGEGAFRADLYFRLNLLQ  502
             +LQ+RLLRVLQEREV++LG+  + ++DVR+IAATH+DL A + +  FR+DLY+RLN+L+
Sbjct  439  VSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLYYRLNILR  498

Query  503  IELPPLRERRADVLPLARHLLNRTALQYGLSEAAIGRVLKFLAPLLQRYAWPGNVRELDN  562
            ++  PLRER  D+ PL  + +++  L  G + +A G +  +L P L R +WPGNVREL+N
Sbjct  499  LQTTPLRERPEDI-PLICQGISQRLLVQGQPPGAAG-ITTLLLPYLVRHSWPGNVRELEN  556

Query  563  LLARAAIYLGATTGESHGDIGPDLLALFPE-FERMQREGGHGapstaaaaatlaaprltr  621
            ++ RA +  ++   + HG     L  ++PE FE   +  ++  PS +    +++     R
Sbjct  557  VIERAMLS-ASEIFHEHGVDEHYLARVLPELFEGQPQPRSRKEPSRTKDLHAIGKTAQLR  615

Query  622  srDEVVRALEQCGGNRAAASRALGIGRTTLWRLLKAD  658
              +E   +L+ C G+   A+R LGI+RTTLWR L++ 
Sbjct  616  YIQE---TLDSCQGSLDEAARRLGISRTTLWRRLRSA  649

23) BC1001_3718 in NC_015137


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  365 bits (1371),  Expect = 5e-102, Method: Compositional matrix adjust.
 Identities = 261/638 (41%), Positives = 430/638 (68%), Gaps = 13/638 (2%)

Query  24   SRLQSLCETIAPRYAEHARFFSIREGYGAAVTALQSYVDAGSVDVVLAAGSNGAYLRDNL  83
            SRL SL   +A+ Y++  ++  +  + + A+ + +   + G  DV + AG+ +AYLR +L
Sbjct  22   SRLASLVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRGKADVFVCAGATAAYLRRHL  80

Query  84   SVPVVMVKVNGFDVLSAITHATTTWPGAPIGLVLHETISHELADLGGLLTVRLTQRVYRS  143
            + PV+ ++V G D+L A+ +A     ++ ++L+  + I ++L  +  L+TV++ Q  Y +
Sbjct  81   ARPVLTMRVGGGDLLRALEQARE--HSSHVALLSYNRIDRDLQAMRTLFTVQVHQVAYTT  138

Query  144  VDEVKTAVNNLAAEGCRVIIGPGMACDLAQQAGLASVFLYSLGAVEEAFERSVELARVSR  203
            ++E + AV +++  GCR IIG++   +LA+QAGL +V+  S ++   A+E ++ +    R
Sbjct  139  LEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAMGVLDSQR  198

Query  204  QKESKRVRLNTIVAHLRDGVAAFDDAGQLEAVNPAMLELLGLEGGRDMPAQLARRVGPW-  262
               +KR +L++++ H+  GVAA D+ G ++++NPA+ +LL L  +  +   L +      
Sbjct  199  LEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQQLCPELD  258

Query  263  LRDALERGGAVDERIEQIGQRSLIVNCVPIVEQGARSGAVVTVQDALVAQRIDRSLRTSQ  322
            L++ALE GG+ ++R+ ++G ++++ N +PI+E+G R+G V+T QD    QR D+ +R+++
Sbjct  259  LQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRADQRIRSTR  318

Query  323  RPKHLVARHRLEDLVGASAALERVRRLAHAGAAHDATVLLSGESGTGKELVAQGIHNASR  382
            RP  + AR RLE+L GAS A   + +LA   AA ++T+L++GESGTGKEL+AQGIHN S 
Sbjct  319  RPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQGIHNESP  378

Query  383  RRGNPFVAFNCAALPEGLIESELFGHEEGAFTGARRGGKPGLFEIAHTGTIFLDEIGEMP  442
            RR  PFVA+NCAA+PE+L+ESELFG EEGAF+G+R+GGKPGLFE AH GT+FLDEIG+MP
Sbjct  379  RRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMP  438

Query  443  AALQSRLLRVLQEREVMKLGSGRATPVDVRVIAATHRDLPALVGEGAFRADLYFRLNLLQ  502
             +LQ+RLLRVLQEREV++LG+  + ++DVR+IAATH+DL A + +  FR+DLY+RLN+L+
Sbjct  439  VSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLYYRLNILR  498

Query  503  IELPPLRERRADVLPLARHLLNRTALQYGLSEAAIGRVLKFLAPLFERYAWPGNVRELDN  562
            ++  PLRER  D+ PL  + +++  L  G + +A G +  +L P + R +WPGNVREL+N
Sbjct  499  LQTTPLRERPEDI-PLICQGISQRLLVQGQPPGAAG-ITTLLLPYLVRHSWPGNVRELEN  556

Query  563  LLARAAIYLGATTGESDGDIGPDLLA-LFPE-FERMQREDGHGapstaaaaatlaaprlt  620
            ++ RA   L+A+    + +++ + LA ++PE FE   +  ++  PS +    +++     
Sbjct  557  VIERAM--LSASEIFHEHGVDEHYLARVLPELFEGQPQPRSRKEPSRTKDLHAIGKTAQL  614

Query  621  psRDEVVRALEQCGGNRAAASRALGIGRTTLWRLLKAD  658
               +E   +L+ C G+   A+R LGI+RTTLWR L++ 
Sbjct  615  RYIQE---TLDSCQGSLDEAARRLGISRTTLWRRLRSA  649

24) prpR in NC_003296


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  364 bits (1366),  Expect = 1e-101, Method: Compositional matrix adjust.
 Identities = 268/656 (41%), Positives = 427/656 (66%), Gaps = 30/656 (4%)

Query  5    PHLAFRPRIWACGISRLSDLFLDIAAEYNDRAELRVITRGFEDIV---REIEAVGAERPD  61
            +HL  RPR +    SRL+ L  ++AA Y D  ++ V+  +  + +   R++E  G  ++D
Sbjct  13   SHLQ-RPRQR----SRLASLVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRG--KAD  64

Query  62   VVVAGGSNGAYLKPRLSLPVVVINPTGFDVMHALARARREAESVALVTHGDTPDEVRRFV  121
            V V +G+ +AYL+ +L+ PV+ +   G D+++AL +AR ++  VAL++      +++   
Sbjct  65   VFVCAGATAAYLRRHLARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMR  124

Query  122  AAYGMDVVFAAYQSRQDAESCVLDLRDRGVGAVVGPGLVTDLAAQAGLHAVFLYSRDSVR  181
            + + ++V   AY + ++A   VL++   G  +++G++ V +LA QAGLH+V+  S D+ R
Sbjct  125  TLFTVQVHQVAYTTLEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTAR  184

Query  182  AAFDTALEVVQATRREGQRRQRLDNLLQHLRDGVVALDAQGRVEAINQRLATALGIDARQ  241
             A++ A+ V+++ R E  +R++LD +LQH+  GV A+D QG V+++N  LA  L +    
Sbjct  185  KALEEAMGVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSS  244

Query  242  AAGQplla--iapnllgllpdtdgdtlgtVRGVSYVIHRGPLASTGAGAADGTVFTFQES  299
            A G+PL       +L   L D +G+    +R  S  +    L+    G   G V+T Q+ 
Sbjct  245  ALGRPLQQLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDI  304

Query  300  RAVERLDRTLRSGQRAPQFTARYRIDDLIGASAPMERVRALVRRYARSDATVLVLGESGT  359
             AV+R D+ +RS +R+  FTARYR+++L GAS +   +  L +R+A S++T+L+ GESGT
Sbjct  305  TAVQRADQRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGT  364

Query  360  GKEMVAQGMHQLSARRDFPFVAINCGAFPEALLESELFGYEEGAFTGARKGGKTGLIEAA  419
            GKE++AQG+H+ S+RR+ PFVAINC+AFPE+LLESELFGYEEGAF+G+RKGGK GL+EAA
Sbjct  365  GKELLAQGIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAA  424

Query  420  HRGTLFLDEIGEMPLPLQSRLLRVLQEREVVRLGSTEPTRVDIRVVAATHRALTDAVEAG  479
            HRGTLFLDEIG+MP++LQ+RLLRVLQEREV+RLG+TEP  +D+R++AATH+ L  A+   
Sbjct  425  HRGTLFLDEIGDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDR  484

Query  480  TFRADLYYRLNILSIALPPLRDRPGDVLPLAAELLVQAARREPRLLLRIPDTEVAARVLA  539
             FR+DLYYRLNIL +   PLR+RP D+ PL  + + Q      RLL++      A+  ++
Sbjct  485  EFRTDLYYRLNILRLQTTPLRERPEDI-PLICQGISQ------RLLVQGQPPGAAG--IT  535

Query  540  GVADP-LRRYPWAGNVRELQSVVERIAVELADTDAMDAGAITQDVLRVIAPEVFEARGQG  598
             +  P L R +W+GNVREL++V+ER    L+ ++  +  ++ ++ L  + PE+FE++ Q 
Sbjct  536  TLLLPYLVRHSWPGNVRELENVIERAM--LSASEIFHEHGVDEHYLARVLPELFEGQPQP  593

Query  599  K-----TAALSLRERSRGVEaeairaalaaHGGDRDAVCKALGISKTTLWRRLNAG  649
            +     + +  L+  ++  +   I+ +L +  G  D   + LGIS+TTLWRRL ++
Sbjct  594  RSRKEPSRTKDLHAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLRSA  649

25) prpR in NC_021745


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  364 bits (1368),  Expect = 8e-102, Method: Compositional matrix adjust.
 Identities = 268/655 (41%), Positives = 427/655 (66%), Gaps = 30/655 (4%)

Query  5    PHLAFRPRIWACGISRLSDLFLDIAAEYNDRAELRVITRGFEDIV---REIEAAGAERPD  61
            +HL  RPR +    SRL+ L  ++AA Y D  ++ V+  +  + +   R++E  G  ++D
Sbjct  13   SHLQ-RPRQR----SRLASLVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRG--KAD  64

Query  62   VVVAGGSNGAYLKPRLSLPVVVINPTGFDVMHALARARREAESVALVTHGDTPDEVRRFV  121
            V V +G+ +AYL+ +L+ PV+ +   G D+++AL +AR ++  VAL++      +++   
Sbjct  65   VFVCAGATAAYLRRHLARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMR  124

Query  122  AAYGMDVVFAAYQSRQDAESCVLDLRDRGVGAVVGPGLVTDLAAQAGLHAVFLYSRDSVR  181
            + + ++V   AY + ++A   VL++   G  +++G++ V +LA QAGLH+V+  S D+ R
Sbjct  125  TLFTVQVHQVAYTTLEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTAR  184

Query  182  AAFDTALEVVQATRREGQRRQRLDNLLQHLRDGVVALDAQGRVEAINQRLATALGIDARQ  241
             A++ A+ V+++ R E  +R++LD +LQH+  GV A+D QG V+++N  LA  L +    
Sbjct  185  KALEEAMGVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSS  244

Query  242  AGGQplla--iapnllgllpdtdgdtlgtVRGVSYVIHRGPLASTGAGAADGTVFTFQES  299
            A G+PL       +L   L D +G+    +R  S  +    L+    G   G V+T Q+ 
Sbjct  245  ALGRPLQQLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDI  304

Query  300  RAVERLDRTLRSGQRAPQFTARYRIDDLIGASAPMERVRALVRRYARSDATVLVLGESGT  359
             AV+R D+ +RS +R+  FTARYR+++L GAS +   +  L +R+A S++T+L+ GESGT
Sbjct  305  TAVQRADQRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGT  364

Query  360  GKEMVAQGMHQLSARRDFPFVAINCGAFPEALLESELFGYEEGAFTGARKGGKTGLIEAA  419
            GKE++AQG+H+ S+RR+ PFVAINC+AFPE+LLESELFGYEEGAF+G+RKGGK GL+EAA
Sbjct  365  GKELLAQGIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAA  424

Query  420  HRGTLFLDEIGEMPLPLQSRLLRVLQEREVVRLGSTEPTRVDIRVVAATHRALTDAVEAG  479
            HRGTLFLDEIG+MP++LQ+RLLRVLQEREV+RLG+TEP  +D+R++AATH+ L  A+   
Sbjct  425  HRGTLFLDEIGDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDR  484

Query  480  AFRADLYYRLNILSIALPPLRDRPGDVLPLAAELLVQAARREPRLLLRIPDTEVAARVLA  539
             FR+DLYYRLNIL +   PLR+RP D+ PL  + + Q      RLL++      A+  ++
Sbjct  485  EFRTDLYYRLNILRLQTTPLRERPEDI-PLICQGISQ------RLLVQGQPPGAAG--IT  535

Query  540  GVADP-LRRYPWAGNVRELQSVVERIAVELADTDAMDAGAITQDVLRVIAPEVFEARGQG  598
             +  P L R +W+GNVREL++V+ER    L+ ++  +  ++ ++ L  + PE+FE++ Q 
Sbjct  536  TLLLPYLVRHSWPGNVRELENVIERAM--LSASEIFHEHGVDEHYLARVLPELFEGQPQP  593

Query  599  K-----TAALSLREHSRGVEaeairaalaaHDGDRDAVCKALGISKTTLWRRLNA  648
            +     + +  L+  ++  +   I+ +L + +G  D   + LGIS+TTLWRRL +
Sbjct  594  RSRKEPSRTKDLHAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLRS  648

26) BamMC406_5390 in NC_010552


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  361 bits (1358),  Expect = 5e-101, Method: Compositional matrix adjust.
 Identities = 264/647 (41%), Positives = 418/647 (65%), Gaps = 33/647 (5%)

Query  26   SRLRDLFREIAGEFDERADVRIVTRAYEDALSAIAE-AGTARPDVIVAAGSNGGFLKTRA  84
            SRL  L   +A+ + +  ++ ++  +  +AL +  +    +++DV+V AG+ +++L+ + 
Sbjct  22   SRLASLVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRGKADVFVCAGATAAYLRRHL  80

Query  85   QVPVVVVSPTGFDVMQALARARRDATRIALVSAGETPPEVRRFVAAYGLDVQFASYQSAQ  144
              PV+ +   G D+++AL +AR +++++AL+S      +++   + + ++V+  +Y + +
Sbjct  81   ARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFTVQVHQVAYTTLE  140

Query  145  EAEACVLDLHDRGIETIVGPGLVTDLAASAGMGAVFLYSHASVRKAVETALEVAYATHAE  204
            EA   VL++   G  +I+G++ V +LA  AG+ +V+  S+ + RKA+E A+ V  + + E
Sbjct  141  EARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAMGVLDSQRLE  200

Query  205  AFRRQRLDNLLQHLRDGVVALDARGHVEAINERLASALGVEPAAAVGRALVDLRPEL---  261
              +R++LD +LQH+  GV A+D +G V+++N  LA  L +  ++A+GR+L +L PEL   
Sbjct  201  IAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQQLCPELDLQ  260

Query  262  RTLRGEDGDALATVRGVRYVVHRG--PLVDRGVTSGSVLTFQESRAVERLDRALRSQPNT  319
            ++L + +G+    +R     V     P+++ G  +G VLT Q+  AV+R D+ +RS    
Sbjct  261  QALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRADQRIRSTRRP  320

Query  320  QQFAARYALDDVVGASAPMARVRDLVRRYAKSDATVLVLGESGTGKEMIAQSLHALSVRR  379
              F+ARY L+++ GAS +   + +L +R+A S++T+L+ GESGTGKE++AQ++H  S RR
Sbjct  321  GAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQGIHNESPRR  380

Query  380  SYPFVAINCGAFPEALLESELFGYEEGAFTGARRGGKTGLFEAAHRGTLFLDEIGEMPPS  439
              PFVAINC+AFPE+LLESELFGYEEGAF+G+R+GGK GLFEAAHRGTLFLDEIG+MP S
Sbjct  381  HGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMPVS  440

Query  440  LQSRLLRVLQEREVIRLGSTEPIRIDVRVIAATHRPLLAAVEAGTFRADLYYRLNILNIG  499
            LQ+RLLRVLQEREV+RLG+TEPI IDVR+IAATH+ L AA+    FR+DLYYRLNIL + 
Sbjct  441  LQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLYYRLNILRLQ  500

Query  500  LPPLRERAADIP----ALAATLLVQAARREPRLAERVREVGDAMRVFGATQATLARYRWP  555
              PLRER+ DIP    +++  LLVQ+    +        +   +  +      L R  WP
Sbjct  501  TTPLRERPEDIPLICQGISQRLLVQGQPPGA------AGITTLLLPY------LVRHSWP  548

Query  556  GNVRELQNVVERIAVELAEEVDEQDpgapcaalapdalqaiapELFATppea---adpdd  612
            GNVREL+NV+ER  +  +E  +E++       +  + L  + PELF   P++    +P  
Sbjct  549  GNVRELENVIERAMLSASEIFHEHG-------VDEHYLARVLPELFEGQPQPRSRKEPSR  601

Query  613  aQTLQarrrraeadeiraVLDACGGDRDRACAMLGISKTTLWRKLSA  659
            ++ L+A  + A+   I+  LD+C G  D A   LGIS+TTLWR+L +
Sbjct  602  TKDLHAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLRS  648

27) prpR in NC_011001


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  361 bits (1357),  Expect = 5e-101, Method: Compositional matrix adjust.
 Identities = 264/647 (41%), Positives = 418/647 (65%), Gaps = 31/647 (4%)

Query  4    SRLRDLFREIAGEFDERADVRIVTRAYEDALGAIAE-AGTARPDVIVAAGSNGGFLKTRA  62
            SRL  L   +A+ + +  ++ ++  +  +AL +  +    +++DV+V AG+ +++L+ + 
Sbjct  22   SRLASLVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRGKADVFVCAGATAAYLRRHL  80

Query  63   QVPVVVVSPTGFDVMQALARARRDATRIALVSAGETPPEVRRFVAAYGLDVQFASYQSAQ  122
              PV+ +   G D+++AL +AR +++++AL+S      +++   + + ++V+  +Y + +
Sbjct  81   ARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFTVQVHQVAYTTLE  140

Query  123  EAEACVHDLRDRGIETIVGPGLVTDLAASAGMGAVFLYSHASVRKAVETALEVAYATHAE  182
            EA   V ++   G  +I+G++ V +LA  AG+ +V+  S+ + RKA+E A+ V  + + E
Sbjct  141  EARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAMGVLDSQRLE  200

Query  183  AFRRQRLDTLLQHLRDGVVALDAHGRVEAINERLASALGVEPAAAVGRALVDLRPEL---  239
              +R++LD++LQH+  GV A+D +G V+++N  LA  L +  ++A+GR+L +L PEL   
Sbjct  201  IAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQQLCPELDLQ  260

Query  240  RTLRGEDGDALATVRGVRYVVHRG--PLVDRGVTSGSVLTFQESRAVERLDRALRSQPTT  297
            ++L + +G+    +R     V     P+++ G  +G VLT Q+  AV+R D+ +RS    
Sbjct  261  QALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRADQRIRSTRRP  320

Query  298  QQFAARYALDDVVGASAPMTRVRELVRRYAKSDATVLVLGESGTGKEMIAQSLHALSARR  357
              F+ARY L+++ GAS +   + +L +R+A S++T+L+ GESGTGKE++AQ++H  S+RR
Sbjct  321  GAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQGIHNESPRR  380

Query  358  SYPFVAVNCGAFPEALLESELFGYEEGAFTGARRGGKTGLFEAAHRGTLFLDEIGEMPPS  417
              PFVA+NC+AFPE+LLESELFGYEEGAF+G+R+GGK GLFEAAHRGTLFLDEIG+MP S
Sbjct  381  HGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMPVS  440

Query  418  LQSRLLRVLQEREVIRLGSTEPIRIDVRVIAATHRPLLAAVEAGTFRADLYYRLNILNVG  477
            LQ+RLLRVLQEREV+RLG+TEPI IDVR+IAATH+ L AA+    FR+DLYYRLNIL + 
Sbjct  441  LQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLYYRLNILRLQ  500

Query  478  LPPLRERAADIP----ALAATLLVQAARREPRLAERVRDTDDALRVLDATQATLARYRWP  533
              PLRER+ DIP    +++  LLVQ+    +           ++  L    + L R  WP
Sbjct  501  TTPLRERPEDIPLICQGISQRLLVQGQPPGA----------AGITTL--LLPYLVRHSWP  548

Query  534  GNVRELQNVVERIAVELAEDVDESdpdaacaalapgalQVIAPELFaappda-ggadddd  592
            GNVREL+NV+ER  +  +E  +E + D    A        + PELF + P++ +  +   
Sbjct  549  GNVRELENVIERAMLSASEIFHEHGVDEHYLAR-------VLPELFEGQPQPRSRKEPSR  601

Query  593  gQTLHarrrraeadeiraVLDACGGDRDRACAMLGISKTTLWRKLSA  639
             + LHA  + A+   I+  LD+C G  D A   LGIS+TTLWR+L +
Sbjct  602  TKDLHAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLRS  648

28) BYI23_B009430 in NC_016625


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  361 bits (1357),  Expect = 6e-101, Method: Compositional matrix adjust.
 Identities = 261/634 (42%), Positives = 420/634 (67%), Gaps = 33/634 (5%)

Query  37   SKLRDLYRDVASAYDGVADLRIVARGYEDAVN---DIEHAGVDRPDVIVAAGSNGSYLKA  93
            S+L  L  ++A++Y +V ++ ++  +  +A++   D+E+ G  ++DV+V AG+ ++YL+ 
Sbjct  22   SRLASLVAGLAAGYPDV-HIEVLDTSVSEALQTARDLEQRG--KADVFVCAGATAAYLRR  78

Query  94   RTGVPVVLVAPTGFDVMHALARAKREADRVALVTHGETPPELKRFFAAFGVEVESASYLA  153
            + + PV+ +   G D+++AL +A+ ++ +VAL++      +L+   + F V+V+  +Y +
Sbjct  79   HLARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFTVQVHQVAYTT  138

Query  154  AEDAEACVLDLRDRGVKAIVGPGLVTELAEKAGLRSVFLYSRPSVQAAIDTALEVANATL  213
             E+A   VL++   G ++I+G++ V ELAE+AGL++V+  S  + + A++ A+ V ++  
Sbjct  139  LEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAMGVLDSQR  198

Query  214  AESMRRRRLDQVLQNLRDGVIALDAQGRIEALSGKMAQLLRLNPSQAVGRRLAELapdva  273
             E  +RR+LD VLQ++  GV A+D QG +++L+  +AQLL L  S A+GR L +L P++ 
Sbjct  199  LEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQQLCPELD  258

Query  274  aavpaapGESLET--VRGASYVVHRSAWGE-GSNETGGAIVTFQESVALQRMDRSVRTRQ  330
               +   G + E   +R +S  V  +      + E  G ++T Q+  A+QR D+ +R+ +
Sbjct  259  LQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRADQRIRSTR  318

Query  331  RAPQLTARYVIGDLLGesaaieaararmrryarseaTVLIRGESGTGKELAAQGIHNASA  390
            R+  +TARY + +L G S A        +R+A S++T+LI GESGTGKEL AQGIHN S+
Sbjct  319  RPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQGIHNESP  378

Query  391  RREFAFVALNCGAFPETLLESELFGYEEGAFTGARRGGKPGLIETAHRGTLFLDEIGEMP  450
            RR+ +FVA+NC+AFPE+LLESELFGYEEGAF+G+R+GGKPGL+E+AHRGTLFLDEIG+MP
Sbjct  379  RRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMP  438

Query  451  LPLQSRLLRVLQEREVARLGSTEPLQVDVRIIAATHRALTEHVEKGEFRADLFYRLNILN  510
            ++LQ+RLLRVLQEREV RLG+TEP+ +DVRIIAATH+ L   +   EFR+DL+YRLNIL 
Sbjct  439  VSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLYYRLNILR  498

Query  511  LALPPLRERAADIPM----LAAHLLARTRLSIDDDALAILMAY----RWPGNVRELQNVM  562
            L   PLRER+ DIP+    ++ +LL + + +   +  ++L++Y     WPGNVREL+NV+
Sbjct  499  LQTTPLRERPEDIPLICQGISQRLLVQGQPPGAAGITTLLLPYLVRHSWPGNVRELENVI  558

Query  563  ERVAVEMEDE-PERPVTPALLADIAPEIMNGDQPDLTLRARVKRTQADEVRAV-------  614
            ER  +   +   E+ V    LA + PE+ +G+      R+R   +++ +++A+       
Sbjct  559  ERAMLSASEIFHEHGVDEHYLARVLPELFEGQPQP---RSRKEPSRTKDLHAIGKTAQLR  615

Query  615  -----LDAFDGDREKACAALGISKTTLWRKLSGT  643
                 LD+ +G  + A   LGIS+TTLWR+L ++
Sbjct  616  YIQETLDSCQGSLDEAARRLGISRTTLWRRLRSA  649

29) Bcenmc03_4754 in NC_010515


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  361 bits (1356),  Expect = 7e-101, Method: Compositional matrix adjust.
 Identities = 260/647 (41%), Positives = 417/647 (65%), Gaps = 31/647 (4%)

Query  26   SRLRELFREIAGEFDERADVRIVTRAYEDALSAIAE-AGTARPDVIVAAGSNGGFLKTRA  84
            SRL  L   +A+ + +  ++ ++  +  +AL +  +    +++DV+V AG+ +++L+ + 
Sbjct  22   SRLASLVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRGKADVFVCAGATAAYLRRHL  80

Query  85   QVPVVVVSPTGFDVMQALARARRDATRIALVSAGETPPEVRRFVAAYGLDVQFASYQSAQ  144
              PV+ +   G D+++AL +AR +++++AL+S      +++   + + ++V+  +Y + +
Sbjct  81   ARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFTVQVHQVAYTTLE  140

Query  145  EAEACVHDLRDRGIETIVGPGLVTDLAASVGMGAVFLYSHASVRKAVETALEVAYATHAE  204
            EA   V ++   G  +I+G++ V +LA   G+ +V+  S+ + RKA+E A+ V  + + E
Sbjct  141  EARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAMGVLDSQRLE  200

Query  205  AFRRQRLDTLLQHLRDGVVALDAHGRVEAINERLASALGVEPAAAVGRALVDLRPEL---  261
              +R++LD++LQH+  GV A+D +G V+++N  LA  L +  ++A+GR+L +L PEL   
Sbjct  201  IAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQQLCPELDLQ  260

Query  262  RTLRGEDGDALATVRGVRYVVHRG--PLVDRGVTSGSVLTFQESRAVERLDRALRSQPTT  319
            ++L + +G+    +R     V     P+++ G  +G VLT Q+  AV+R D+ +RS    
Sbjct  261  QALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRADQRIRSTRRP  320

Query  320  QQFAARYALDDVVGASAPMTRVRELVRRYAKSDATVLVLGESGTGKEMIAQSLHALSARR  379
              F+ARY L+++ GAS +   + +L +R+A S++T+L+ GESGTGKE++AQ++H  S+RR
Sbjct  321  GAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQGIHNESPRR  380

Query  380  SYPFVAVNCGAFPEALLESELFGYEEGAFTGARRGGKTGLFEAAHRGTLFLDEIGEMPPS  439
              PFVA+NC+AFPE+LLESELFGYEEGAF+G+R+GGK GLFEAAHRGTLFLDEIG+MP S
Sbjct  381  HGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMPVS  440

Query  440  LQSRLLRVLQEREVIRLGSTEPIRIDVRVIAATHRPLLAAVEAGTFRADLYYRLNILNIG  499
            LQ+RLLRVLQEREV+RLG+TEPI IDVR+IAATH+ L AA+    FR+DLYYRLNIL + 
Sbjct  441  LQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLYYRLNILRLQ  500

Query  500  LPPLRQRAADIP----ALAATLLVQAARREPRLAERVRDTDDALRVLDATQATLARYRWP  555
              PLR+R+ DIP    +++  LLVQ+    +           ++  L    + L R  WP
Sbjct  501  TTPLRERPEDIPLICQGISQRLLVQGQPPGA----------AGITTL--LLPYLVRHSWP  548

Query  556  GNVRELQNVVERIAVELAEAVDESdpgaacaalapdalHVIAPELFaappda-agaaddd  614
            GNVREL+NV+ER  +  +E  +E + +    A        + PELF + P++ +      
Sbjct  549  GNVRELENVIERAMLSASEIFHEHGVDEHYLAR-------VLPELFEGQPQPRSRKEPSR  601

Query  615  aRTLQarrrraeadeiraVLDACGGDRDRACAMLGISKTTLWRKLSA  661
            ++ L+A  + A+   I+  LD+C G  D A   LGIS+TTLWR+L +
Sbjct  602  TKDLHAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLRS  648

30) Bmul_3286 in NC_010086


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  360 bits (1351),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 265/647 (41%), Positives = 415/647 (65%), Gaps = 33/647 (5%)

Query  26   SRLRDLFREIAGEFDERADVRIVTRAYEDALGAIAE-AGTARPDVIVAAGSNGGFLKTRA  84
            SRL  L   +A+ + +  ++ ++  +  +AL +  +    +++DV+V AG+ +++L+ + 
Sbjct  22   SRLASLVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRGKADVFVCAGATAAYLRRHL  80

Query  85   QVPVVVVSPTGFDVMQALARARRDATRIALVSAGDTPPEVRRFVAAYGLDVQFASYQTAQ  144
              PV+ +   G D+++AL +AR +++++AL+S      +++   + + ++V+  +Y T +
Sbjct  81   ARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFTVQVHQVAYTTLE  140

Query  145  EAEACVHDLRDRGIETIVGPGLVTDLAASAGMGAVFLYSHASVRRAVETALEVAYATHAE  204
            EA   V ++   G  +I+G++ V +LA  AG+ +V+  S+ + R+A+E A+ V  + + E
Sbjct  141  EARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAMGVLDSQRLE  200

Query  205  AFRRQRLDTLLQHLRDGVVALDAQGRVEAINERLASALGVEPSAAVGRALVDLRPEL---  261
              +R++LD++LQH+  GV A+D QG V+++N  LA  L +  S+A+GR+L +L PEL   
Sbjct  201  IAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQQLCPELDLQ  260

Query  262  RTLRGEDGDALATVRGVRYVVHRG--PLVDRGVTSGSVLTFQESRAVERLDRALRSQPNT  319
            ++L + +G+    +R     V     P+++ G  +G VLT Q+  AV+R D+ +RS    
Sbjct  261  QALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRADQRIRSTRRP  320

Query  320  QQFAARYSLDDVVGASAPMTRVRELVRRYAKSDATVLVLGESGTGKEMIAQSLHALSARR  379
              F+ARY L+++ GAS +   + +L +R+A S++T+L+ GESGTGKE++AQ++H  S+RR
Sbjct  321  GAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQGIHNESPRR  380

Query  380  SYPFVAVNCGAFPEALLESELFGYEEGAFTGARRGGKTGLFEAAHRGTLFLDEIGEMPPS  439
              PFVA+NC+AFPE+LLESELFGYEEGAF+G+R+GGK GLFEAAHRGTLFLDEIG+MP S
Sbjct  381  HGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMPVS  440

Query  440  LQSRLLRVLQEREVIRLGSTEPIRIDVRVIAATHRPLLAAVEAGTFRADLYYRLNILNVG  499
            LQ+RLLRVLQEREV+RLG+TEPI IDVR+IAATH+ L AA+    FR+DLYYRLNIL + 
Sbjct  441  LQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLYYRLNILRLQ  500

Query  500  LPPLRERAADIP----ALAATLLVQaarreprlaerlrdaddaarvlGAVQPTLTRYRWP  555
              PLRER+ DIP    +++  LLVQ+    +     L            + P L R  WP
Sbjct  501  TTPLRERPEDIPLICQGISQRLLVQGQPPGAAGITTL------------LLPYLVRHSWP  548

Query  556  GNVRELQNVIERIaveladaadegdaaapcaalapdaLQTIAPELFaappdg---gdaed  612
            GNVREL+NVIER       A   +       ++  + L  + PELF + P+     ++  
Sbjct  549  GNVRELENVIER-------AMLSASEIFHEHGVDEHYLARVLPELFEGQPQPRSRKEPSR  601

Query  613  aQTLQarrrraeadeiraVLDACGGDRDRACAMLGISKTTLWRKLSA  659
            ++ L+A  + A+   I+  LD+C G  D A   LGIS+TTLWR+L +
Sbjct  602  TKDLHAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLRS  648

31) prpR in NC_010805


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  360 bits (1351),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 265/647 (41%), Positives = 415/647 (65%), Gaps = 33/647 (5%)

Query  26   SRLRDLFREIAGEFDERADVRIVTRAYEDALGAIAE-AGTARPDVIVAAGSNGGFLKTRA  84
            SRL  L   +A+ + +  ++ ++  +  +AL +  +    +++DV+V AG+ +++L+ + 
Sbjct  22   SRLASLVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRGKADVFVCAGATAAYLRRHL  80

Query  85   QVPVVVVSPTGFDVMQALARARRDATRIALVSAGDTPPEVRRFVAAYGLDVQFASYQTAQ  144
              PV+ +   G D+++AL +AR +++++AL+S      +++   + + ++V+  +Y T +
Sbjct  81   ARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFTVQVHQVAYTTLE  140

Query  145  EAEACVHDLRDRGIETIVGPGLVTDLAASAGMGAVFLYSHASVRRAVETALEVAYATHAE  204
            EA   V ++   G  +I+G++ V +LA  AG+ +V+  S+ + R+A+E A+ V  + + E
Sbjct  141  EARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAMGVLDSQRLE  200

Query  205  AFRRQRLDTLLQHLRDGVVALDAQGRVEAINERLASALGVEPSAAVGRALVDLRPEL---  261
              +R++LD++LQH+  GV A+D QG V+++N  LA  L +  S+A+GR+L +L PEL   
Sbjct  201  IAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQQLCPELDLQ  260

Query  262  RTLRGEDGDALATVRGVRYVVHRG--PLVDRGVTSGSVLTFQESRAVERLDRALRSQPNT  319
            ++L + +G+    +R     V     P+++ G  +G VLT Q+  AV+R D+ +RS    
Sbjct  261  QALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRADQRIRSTRRP  320

Query  320  QQFAARYSLDDVVGASAPMTRVRELVRRYAKSDATVLVLGESGTGKEMIAQSLHALSARR  379
              F+ARY L+++ GAS +   + +L +R+A S++T+L+ GESGTGKE++AQ++H  S+RR
Sbjct  321  GAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQGIHNESPRR  380

Query  380  SYPFVAVNCGAFPEALLESELFGYEEGAFTGARRGGKTGLFEAAHRGTLFLDEIGEMPPS  439
              PFVA+NC+AFPE+LLESELFGYEEGAF+G+R+GGK GLFEAAHRGTLFLDEIG+MP S
Sbjct  381  HGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMPVS  440

Query  440  LQSRLLRVLQEREVIRLGSTEPIRIDVRVIAATHRPLLAAVEAGTFRADLYYRLNILNVG  499
            LQ+RLLRVLQEREV+RLG+TEPI IDVR+IAATH+ L AA+    FR+DLYYRLNIL + 
Sbjct  441  LQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLYYRLNILRLQ  500

Query  500  LPPLRERAADIP----ALAATLLVQaarreprlaerlrdaddaarvlGAVQPTLTRYRWP  555
              PLRER+ DIP    +++  LLVQ+    +     L            + P L R  WP
Sbjct  501  TTPLRERPEDIPLICQGISQRLLVQGQPPGAAGITTL------------LLPYLVRHSWP  548

Query  556  GNVRELQNVIERIaveladaadegdaaapcaalapdaLQTIAPELFaappdg---gdaed  612
            GNVREL+NVIER       A   +       ++  + L  + PELF + P+     ++  
Sbjct  549  GNVRELENVIER-------AMLSASEIFHEHGVDEHYLARVLPELFEGQPQPRSRKEPSR  601

Query  613  aQTLQarrrraeadeiraVLDACGGDRDRACAMLGISKTTLWRKLSA  659
            ++ L+A  + A+   I+  LD+C G  D A   LGIS+TTLWR+L +
Sbjct  602  TKDLHAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLRS  648

32) AnaeK_0385 in NC_011145


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  359 bits (1350),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 291/639 (46%), Positives = 429/639 (68%), Gaps = 22/639 (3%)

Query  25   VAPLMADVAEVR--VFDKGFEEALQVARELRQSGEEVDAFVAAGTNGAYLRDHadvpvvv  82
            VA L A+ ++V+  V+D +  EALQ AR+L Q G   D FV AG+ +AYLR H   PV+ 
Sbjct  28   VAGLAAGYPDVHIEVLDTSVSEALQTARDLEQRGKA-DVFVCAGATAAYLRRHLARPVLT  86

Query  83   vtastvdaLQALVQARKLSRRIGVVNFRRTVAGLEGVHLIDDTVIEQRPYVTPEEGQAAV  142
            +  +  D L+AL QAR  S +++++++ R   +L++++ +    ++Q +Y T EE++ AV
Sbjct  87   MRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFTVQVHQVAYTTLEEARQAV  146

Query  143  DDLSARGFKVIVGPGPICSVAERSGLRAVLLYGQDSLEEAIRQAAEVARIARVEGSRRTH  202
             ++S  G + I+G++ +  +AE++GL++VL  ++D+   A+ +A  V    R+E ++R H
Sbjct  147  LEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAMGVLDSQRLEIAKRRH  206

Query  203  LQAMFQHLEVGMVAVDTEERIQAINPALQRLLGVTAAEVHGRRLSAVAPELALGPVLEGG  262
            L+A++QH+  G+ AVD +  +Q++NPAL +LL +  +   GR L  + PEL L   LE+G
Sbjct  207  LDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQQLCPELDLQQALEDG  266

Query  263  PPEVETVQRIGVSAAVVSRFPLHEHGVLRGAVLTCQPAPMIQRLERGLRSTHRPPRFVAR  322
              E + V R+G  A V + +P+ E+G   G VLTCQ    +QR ++ +RST+RP  F AR
Sbjct  267  GGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRADQRIRSTRRPGAFTAR  326

Query  323  YALSGLVGESPAMDRLRELAGRYARTDATVLITGESGTGKEMVAQGIHGASRRRDRPFVA  382
            Y L  L G S A   + +LA R+A +++T+LITGESGTGKE++AQGIH  S RR+ PFVA
Sbjct  327  YRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQGIHNESPRRHGPFVA  386

Query  383  VNCAAFPETLLEAELFGYEEGAFTGSRRGGRPGLFEAAHTGTLFLDEIGDVPvtlqtrll  442
            +NCAAFPE+LLE+ELFGYEEGAF+GSR+GG+PGLFEAAH GTLFLDEIGD+PV+LQTRLL
Sbjct  387  INCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMPVSLQTRLL  446

Query  443  rvlqerqvlrlGSNDPTPVDVRVIAATHRDLRQAIARGEFREDLYYRLDILPLHLPPLRE  502
            RVLQER+VLRLG+ +P ++DVR+IAATH+DL  A+   EFR DLYYRL+IL L+  PLRE
Sbjct  447  RVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLYYRLNILRLQTTPLRE  506

Query  503  RGEADVELIASdllkrallrhdaadahrralSTVLPRLRGHAWPGNVRELENVLERVAV-  561
            R E D+ LI  + + + LL ++ + +     + +LP L  H+WPGNVRELENV+ER  + 
Sbjct  507  RPE-DIPLI-CQGISQRLLVQGQPPGAAGITTLLLPYLVRHSWPGNVRELENVIERAMLS  564

Query  562  ---LFADRDPRARVTEEELAAVMPEISDpsaraaapaapavpaapsalaapIDlrlaraa  618
               +F +++    V E+ LA V+PE+ +  +++ +   P+            DL+    +
Sbjct  565  ASEIFHEHG----VDEHYLARVLPELFEGQPQPRSRKEPSRTK---------DLHAIGKT  611

Query  619  qeralierTVAECGGNQAEAARRLGIGRTTLYRKLGRVR  657
             +   I+ T+  C G+  EAARRLGI+RTTL R+L   R
Sbjct  612  AQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLRSAR  650

33) Bamb_4843 in NC_008391


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  358 bits (1343),  Expect = 7e-100, Method: Compositional matrix adjust.
 Identities = 265/647 (41%), Positives = 418/647 (65%), Gaps = 33/647 (5%)

Query  26   SRLRDLFREIAGEFDERADVRIVTRAYEDALSAIAE-AGTARPDVIVAAGSNGGFLKTRA  84
            SRL  L   +A+ + +  ++ ++  +  +AL +  +    +++DV+V AG+ +++L+ + 
Sbjct  22   SRLASLVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRGKADVFVCAGATAAYLRRHL  80

Query  85   QVPVVVVSPTGFDVMQALARARRDASRIALVSAGETPPEVRRFVAAYGLDVQFASYQSAQ  144
              PV+ +   G D+++AL +AR ++S++AL+S      +++   + + ++V+  +Y + +
Sbjct  81   ARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFTVQVHQVAYTTLE  140

Query  145  EAEACVHDLHDRGIETIVGPGLVTDLAASAGMGAVFLYSHASVRKAVETALEVAYATHAE  204
            EA   V ++   G  +I+G++ V +LA  AG+ +V+  S+ + RKA+E A+ V  + + E
Sbjct  141  EARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAMGVLDSQRLE  200

Query  205  AFRRQRLDNLLQHLRDGVVALDARGHVEAINERLASALGVEPAAAVGRALVDLRPEL---  261
              +R++LD +LQH+  GV A+D +G V+++N  LA  L +  ++A+GR+L +L PEL   
Sbjct  201  IAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQQLCPELDLQ  260

Query  262  RTLRGEDGDALATVRGVRYVVHRG--PLVDRGVTSGSVLTFQESRAVERLDRALRSQPNT  319
            ++L + +G+    +R     V     P+++ G  +G VLT Q+  AV+R D+ +RS    
Sbjct  261  QALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRADQRIRSTRRP  320

Query  320  QQFAARYALDDVVGASAPMARVRDLVRRYAKSDATVLVLGESGTGKEMIAQSLHALSVRR  379
              F+ARY L+++ GAS +   + +L +R+A S++T+L+ GESGTGKE++AQ++H  S RR
Sbjct  321  GAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQGIHNESPRR  380

Query  380  SYPFVAINCGAFPEALLESELFGYEEGAFTGARRGGKTGLFEAAHRGTLFLDEIGEMPPS  439
              PFVAINC+AFPE+LLESELFGYEEGAF+G+R+GGK GLFEAAHRGTLFLDEIG+MP S
Sbjct  381  HGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMPVS  440

Query  440  LQSRLLRVLQEREVIRLGSTEPIRIDVRVIAATHRPLLAAVEAGTFRADLYYRLNILNIG  499
            LQ+RLLRVLQEREV+RLG+TEPI IDVR+IAATH+ L AA+    FR+DLYYRLNIL + 
Sbjct  441  LQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLYYRLNILRLQ  500

Query  500  LPPLRERAADIP----ALAATLLVQAARREPRLAERVREVDDAMRVLGATQATLARYRWP  555
              PLRER+ DIP    +++  LLVQ+    +           ++  L    + L R  WP
Sbjct  501  TTPLRERPEDIPLICQGISQRLLVQGQPPGA----------AGITTL--LLPYLVRHSWP  548

Query  556  GNVRELQNVVERIAVELAEEVDEQDpgapcaalapdalqaiapELFATppea---adpdd  612
            GNVREL+NV+ER  +  +E  +E++       +  + L  + PELF   P++    +P  
Sbjct  549  GNVRELENVIERAMLSASEIFHEHG-------VDEHYLARVLPELFEGQPQPRSRKEPSR  601

Query  613  aQTLQarrrraeadeiraVLDACGGDRDRACAMLGISKTTLWRKLSA  659
            ++ L+A  + A+   I+  LD+C G  D A   LGIS+TTLWR+L +
Sbjct  602  TKDLHAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLRS  648

34) C380_20065 in NC_018708


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  357 bits (1342),  Expect = 8e-100, Method: Compositional matrix adjust.
 Identities = 260/622 (42%), Positives = 419/622 (68%), Gaps = 4/622 (0%)

Query  1    MAMPIVAGYRDRADIEVIDGSFEVALELARQRLDSGLVDVFVSAGSNASLLRRGISAPVA  60
            +   + AGY D  +IEV+D S   AL+ AR+  + G  DVFV AG+ A+ LRR ++ PV 
Sbjct  27   LVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRGKADVFVCAGATAAYLRRHLARPVL  85

Query  61   TIQLSGFDILQALIKARATADRVGIVMYGHTLPELESVKGLLNIDIHQYAYQTPDSARDC  120
            T++++G D+L+AL +AR  + +V+++ Y +   +L++++ L+ +++HQ AY T + AR+ 
Sbjct  86   TMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFTVQVHQVAYTTLEEARQA  145

Query  121  IRQLHSDGIRVVVGSSLVVELAENAGLVGLLAYSHASIRQGFEDALELARVAQLEAGRYE  180
            + ++   G R ++GSS VVELAE+AGL G+L+ S+ + R+++E+A+ +    +LE ++  
Sbjct  146  VLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAMGVLDSQRLEIAKRR  205

Query  181  QLNTVLHTLQEAVLAVNQSEQIIAINPAMQRILGLVRAPRLGEPLASVTTDLSLRETLEG  240
            +L++VL+ +  +V AV++   + ++NPA+ ++L L  ++ LG PL  +  +L L+++LE+
Sbjct  206  HLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQQLCPELDLQQALED  265

Query  241  GQPEHGAVLRLQGRDWIANRTPIYEGGHTTGAALTLYDARTIHEADNRLRIQHRRSDHAA  300
            G  E+  V+RL ++  ++N  PI E G+ TG  LT  D  +++ AD+R+R  +R +  +A
Sbjct  266  GGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRADQRIRSTRRPGAFTA  325

Query  301  RHRFESLAGQAPAFLQAIARARRYAATDFSVLITGESGTGKELFAQAMHNASQRARRPFV  360
            R R+E L G + A  + +  A+R+AA++ ++LITGESGTGKEL+AQ++HN S R + PFV
Sbjct  326  RYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQGIHNESPRRHGPFV  385

Query  361  AINCAAFPETLLESELFGHEEGAFTGARRGGKRGLFEAAHTGTLFLDEIGDMPltlqtrl  420
            AINCAAFPE+LLESELFG EEGAF+G+R+GGK GLFEAAH GTLFLDEIGDMP++LQTRL
Sbjct  386  AINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMPVSLQTRL  445

Query  421  lrvlqerrITRLGSVTSIPVDVRVIAATHQPLLQMVNARQFRQDLYYRLNTLTLALPALR  480
            LRVLQER + RLG+  +I++DVR+IAATH+ L   ++ R+FR DLYYRLN L L   +LR
Sbjct  446  LRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLYYRLNILRLQTTPLR  505

Query  481  DRKGDVQVlaarllahslsrVGVSGVTAAEVLAQWGGAMEQHPWPGNVRELENLCDRITV  540
            +R  D+ ++   +  + L +   +G ++   L      + +H+WPGNVRELEN+ +R  +
Sbjct  506  ERPEDIPLICQGISQRLLVQGQPPGAAGITTLLL--PYLVRHSWPGNVRELENVIERAML  563

Query  541  WLSQYRRSDSVEWGGLRDECPELFAATPDIEQNPGAPTATEHPPENPDRHTRAL-AALER  599
              S+  + ++V+   L    PELF + P+      ++ + +  +     + R +  +L+ 
Sbjct  564  SASEIFHEHGVDEHYLARVLPELFEGQPQPRSRKEPSRTKDLHAIGKTAQLRYIQETLDS  623

Query  600  HGGRTGAAAAELGVSRSTFWRW  621
              G  + AA  LG+SR+T+WR+
Sbjct  624  CQGSLDEAARRLGISRTTLWRR  645

35) BC1002_3987 in NC_014118


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  355 bits (1332),  Expect = 6e-99, Method: Compositional matrix adjust.
 Identities = 247/612 (41%), Positives = 409/612 (67%), Gaps = 32/612 (5%)

Query  69   SVDVVLSAGSNGAYLRENLGVPVVMVKVNGFDVLSAITRATATWPQARIGLVLHEAIAQE  128
              DV + AG+ +AYLR +L+ PV+ ++V G D+L A+ +A      ++++L+  + I ++
Sbjct  62   KADVFVCAGATAAYLRRHLARPVLTMRVGGGDLLRALEQARE--HSSHVALLSYNRIDRD  119

Query  129  LADLSPLLNVDLRQRAYRSIDEVRHAVDELAAQGCRVVVGAGMACDLAQQAGMESVFLYS  188
            L  +  L+ V+++Q AY +++E R+AV E++  GCR ++G++   +LA+QAG+++V+  S
Sbjct  120  LQAMRTLFTVQVHQVAYTTLEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLS  179

Query  189  LAAVEEAFERSVELARVSRQKESKRVRLNTIVAHLRDGVAAFDEAGQLEAVNPAMLDLLG  248
              +   A+E ++ +    R   +KR +L++++ H+  GVAA D+ G ++++NPA+ +LL 
Sbjct  180  EDTARKALEEAMGVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLE  239

Query  249  LGPAQEAPKDDEDTPARVGRALAPL-----LRETRAADQPVDERVEQIGGRALIVSCVPI  303
            L             ++ +GR+L  L     L+++   +   ++RV ++G++A++ + +PI
Sbjct  240  LP-----------VSSALGRPLQQLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPI  288

Query  304  VEQGARAGFVVTAQDALVAQRIDRSLRTSQRPRHLVARHRLDDLIGASMALERVRRLARA  363
            +E+G R+G+V+T QD    QR D+ +R+++RP  + AR RL++L GAS A   + +LA+ 
Sbjct  289  LENGERTGLVLTCQDITAVQRADQRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKR  348

Query  364  GAAHDATVLLSGESGTGKELVAQGIHNASRRRGNPFVAFNCAALPEGLIESELFGHEEGA  423
             AA ++T+L++GESGTGKEL+AQGIHN S RR  PFVA+NCAA+PE+L+ESELFG EEGA
Sbjct  349  FAASHSTILITGESGTGKELLAQGIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGA  408

Query  424  FTGARRGGKPGLFEIAHTGTIFLDEIGEMPAALQSRLLRVLQEREVMKLGAGRATPVDVR  483
            F+G+R+GGKPGLFE AH GT+FLDEIG+MP +LQ+RLLRVLQEREV++LG+  + ++DVR
Sbjct  409  FSGSRKGGKPGLFEAAHRGTLFLDEIGDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVR  468

Query  484  VIAATHRDLHALVEQGAFRADLYFRLNLLQIKLPPLRERRADIAPLARHLLERSALQYGL  543
            +IAATH+DL A + +  FR+DLY+RLN+L+++  PLRER  DI PL  + + +  L  G 
Sbjct  469  IIAATHKDLGAAMKDREFRTDLYYRLNILRLQTTPLRERPEDI-PLICQGISQRLLVQGQ  527

Query  544  SAAALERVLAFLDPLFANYAWPGNVRELENLLARAAIYIGDA--ASEMSGNSTADALPDW  601
            +++A   + ++L P +   +WPGNVRELEN++ RA +  ++      +  +  A  LP+ 
Sbjct  528  PPGAAG-ITTLLLPYLVRHSWPGNVRELENVIERAMLSASEIFHEHGVDEHYLARVLPEL  586

Query  602  LAVFPEFGRVRLAGGERIKEASQHANPGGTAPRVSPSREDALRALEQSGGNRAAASRALG  661
            +   P+  R R     R K+     ++ G ++++   +E    +L+   G+   A+R LG
Sbjct  587  FEGQPQ-PRSR-KEPSRTKD----LHAIGKTAQLRYIQE----TLDSCQGSLDEAARRLG  636

Query  662  IGRTTLWRLLKG  673
            I+RTTLWR L++
Sbjct  637  ISRTTLWRRLRS  648

36) Adeh_0357 in NC_007760


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  353 bits (1327),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 291/632 (47%), Positives = 431/632 (69%), Gaps = 15/632 (2%)

Query  25   VAPLMADVAEVR--VFDKGFEEALQVARELRQAGEEVDAFVAAGTNGAYLRDHadvpvvv  82
            VA L A+ ++V+  V+D +  EALQ AR+L Q G   D FV AG+ +AYLR H   PV+ 
Sbjct  28   VAGLAAGYPDVHIEVLDTSVSEALQTARDLEQRGKA-DVFVCAGATAAYLRRHLARPVLT  86

Query  83   vtastvdaLQALVQARKLSKRIGVVNFRRTVAGLEGVHLIDDTVIEQRPYVTPEEGQAAV  142
            +  +  D L+AL QAR  S +++++++ R   +L++++ +    ++Q +Y T EE++ AV
Sbjct  87   MRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFTVQVHQVAYTTLEEARQAV  146

Query  143  DDLSARGFKVIVGPGPICSVAERAGLRAVLLYGQDSLEEAIRQAAEVSRIARVEGSRRTH  202
             ++S  G + I+G++ +  +AE+AGL++VL  ++D+   A+ +A  V    R+E ++R H
Sbjct  147  LEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAMGVLDSQRLEIAKRRH  206

Query  203  LQAMFQHLEVGMVAVDTEERIQAINPALQRLLGVTAAEVHGRRLSAVAPELAIGPVLEGG  262
            L+A++QH+  G+ AVD +  +Q++NPAL +LL +  +   GR L  + PEL +   LE+G
Sbjct  207  LDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQQLCPELDLQQALEDG  266

Query  263  PPEIETVQRIGVSAAVVSRFPLHEHGVLRGAVLTCQPAPLIQRLERGLRSTHRPPRFVAR  322
              E + V R+G  A V + +P+ E+G   G VLTCQ    +QR ++ +RST+RP  F AR
Sbjct  267  GGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRADQRIRSTRRPGAFTAR  326

Query  323  YALSGLVGDSPAMVRLRELAGRYARTDATVLITGESGTGKEMVAQGIHGASRRRDRPFVA  382
            Y L  L G S A   + +LA R+A +++T+LITGESGTGKE++AQGIH  S RR+ PFVA
Sbjct  327  YRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQGIHNESPRRHGPFVA  386

Query  383  VNCAAFPETLLEAELFGYEEGAFTGSRRGGRPGLFEAAHTGTLFLDEIGDVPvtlqtrll  442
            +NCAAFPE+LLE+ELFGYEEGAF+GSR+GG+PGLFEAAH GTLFLDEIGD+PV+LQTRLL
Sbjct  387  INCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMPVSLQTRLL  446

Query  443  rvlqerqvlrlGSNDPTPVDVRVIAATHRDLRQAIARGEFREDLYYRLDILPLHLPPLRE  502
            RVLQER+VLRLG+ +P ++DVR+IAATH+DL  A+   EFR DLYYRL+IL L+  PLRE
Sbjct  447  RVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLYYRLNILRLQTTPLRE  506

Query  503  RGEADVELIASdllkrallrhdaadahrralSMVLPRLRGHLWPGNVRELENVLERVAV-  561
            R E D+ LI  + + + LL ++ + +     +++LP L  H WPGNVRELENV+ER  + 
Sbjct  507  RPE-DIPLI-CQGISQRLLVQGQPPGAAGITTLLLPYLVRHSWPGNVRELENVIERAMLS  564

Query  562  ---LFADRDPRARVTDEELAAVMpevsesaarapapveppapapIDlraaraaqeralie  618
               +F +++    V ++ LA V+PE+ E+ +++ +  EP+    ++  A   + +   I+
Sbjct  565  ASEIFHEHG----VDEHYLARVLPELFEGQPQPRSRKEPSRTKDLH--AIGKTAQLRYIQ  618

Query  619  rTVAECGGNQAEAARRLGIGRTTLYRKLGRVR  650
             T+  C G+  EAARRLGI+RTTL R+L   R
Sbjct  619  ETLDSCQGSLDEAARRLGISRTTLWRRLRSAR  650

37) GEM_5705 in NC_018514


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  353 bits (1325),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 262/648 (41%), Positives = 417/648 (65%), Gaps = 31/648 (4%)

Query  26   SRLRDLFREIAGEFDERADVRIVTRAYEDALSAIAE-AGTARPDVIVAAGSNGGFLKTRA  84
            SRL  L   +A+ + +  ++ ++  +  +AL +  +    +++DV+V AG+ +++L+ + 
Sbjct  22   SRLASLVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRGKADVFVCAGATAAYLRRHL  80

Query  85   QVPVVVVSPTGFDVMQALARARRDASRIALVSAGETPPEVRRFVAAYGLDVQFASYQSAQ  144
              PV+ +   G D+++AL +AR ++S++AL+S      +++   + + ++V+  +Y + +
Sbjct  81   ARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFTVQVHQVAYTTLE  140

Query  145  EAEACVHDLHDRGIETIVGPGLVTDLAASAGMGAVFLYSHASVRKAVETALEVAYATHAE  204
            EA   V ++   G  +I+G++ V +LA  AG+ +V+  S+ + RKA+E A+ V  + + E
Sbjct  141  EARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAMGVLDSQRLE  200

Query  205  AFRRQRLDNLLQHLRDGVVALDARGRVEAINERLASALGVEPAAAVGRALVDLRPEL---  261
              +R++LD +LQH+  GV A+D +G V+++N  LA  L +  ++A+GR+L +L PEL   
Sbjct  201  IAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQQLCPELDLQ  260

Query  262  RTLRGEDGDALATVRGVRYVVHRG--PLVDRGVTSGSVLTFQESRAVERLDRALRSQPNT  319
            ++L + +G+    +R     V     P+++ G  +G VLT Q+  AV+R D+ +RS    
Sbjct  261  QALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRADQRIRSTRRP  320

Query  320  QQFAARYTLDDVIGASAPMARARDLVRRYAKSDATVLVLGESGTGKEMIAQSLHALSVRR  379
              F+ARY L+++ GAS +     +L +R+A S++T+L+ GESGTGKE++AQ++H  S RR
Sbjct  321  GAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQGIHNESPRR  380

Query  380  SYPFVAINCGAFPEALLESELFGYEEGAFTGARRGGKTGLFEAAHRGTLFLDEIGEMPPS  439
              PFVAINC+AFPE+LLESELFGYEEGAF+G+R+GGK GLFEAAHRGTLFLDEIG+MP S
Sbjct  381  HGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMPVS  440

Query  440  LQSRLLRVLQEREVIRLGSTEPIRIDVRVIAATHRPLLAAVEAGTFRADLYYRLNILNVG  499
            LQ+RLLRVLQEREV+RLG+TEPI IDVR+IAATH+ L AA+    FR+DLYYRLNIL + 
Sbjct  441  LQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLYYRLNILRLQ  500

Query  500  LPPLRERAADIP----ALAATLLVQAARREPRLAERVREVSDAMRVLDATQATLARYRWP  555
              PLRER+ DIP    +++  LLVQ+            + ++A  +     + L R  WP
Sbjct  501  TTPLRERPEDIPLICQGISQRLLVQG------------QPPGAAGITTLLLPYLVRHSWP  548

Query  556  GNVRELQNVVERIAVELAEEVDENDPGaacaalapdalqaiaPELFaappdaadtdtdad  615
            GNVREL+NV+ER  +  +E  +E++ +        + L  + PELF      + +  ++ 
Sbjct  549  GNVRELENVIERAMLSASEIFHEHGVD-------EHYLARVLPELF-EGQPQPRSRKEPS  600

Query  616  dartlqarrrraeadeiraVLDACGGDRDRACAMLGISKTTLWRKMSA  663
             ++ L+A  + A+   I+  LD+C G  D A   LGIS+TTLWR++ +
Sbjct  601  RTKDLHAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLRS  648

38) Rpic12D_3976 in NC_012857


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  350 bits (1315),  Expect = 1e-97, Method: Compositional matrix adjust.
 Identities = 263/649 (41%), Positives = 422/649 (66%), Gaps = 29/649 (4%)

Query  10   DRPRIWACGISRLSDLFLDIAAEYNDRAELRVITRGFEDIV---REIDAAGAERPDVVVA  66
            +RPR +    SRL+ L  ++AA Y D  ++ V+  +  + +   R+++  G  ++DV V 
Sbjct  16   QRPRQR----SRLASLVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRG--KADVFVC  68

Query  67   GGSNGAYLKPRLSLPVVVINPTGFDVMHALARARRDAESVALVTHGDTPEEVRRFVAAYG  126
            +G+ +AYL+ +L+ PV+ +   G D+++AL +AR ++  VAL++      +++   + + 
Sbjct  69   AGATAAYLRRHLARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFT  128

Query  127  MDVVFASYTSRQGAESCvldlrdrgvgvvvgpglvtdlATQAGMNAVFLYSRDSVRAAFD  186
            ++V   +YT+ + A   VL++   G   ++G++ V +LA QAG+++V+  S D+ R A++
Sbjct  129  VQVHQVAYTTLEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALE  188

Query  187  TALEVVQATRRETLRRQRLDNLLQHLRDGVVALDAQGRVEAINQRLATALGIEAKQAIGQ  246
             A+ V+++ R E  +R++LD +LQH+  GV A+D QG V+++N  LA  L +    A+G+
Sbjct  189  EAMGVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGR  248

Query  247  PLLSIAP--NllgllpdtdgdtlgtVQGVNYVIHRGPLTSTGTGAAEGTVFTFQESRAVE  304
            PL  + P  +L   L D +G+    ++  +  +    L     G   G V+T Q+  AV+
Sbjct  249  PLQQLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQ  308

Query  305  RLDRTLRSRQRPQQFSARYRLEDLVGESLAMERVRTLIRRYAKSDATVLVLGESGTGKEM  364
            R D+ +RS +RP  F+ARYRLE+L G S A   +  L +R+A S++T+L+ GESGTGKE+
Sbjct  309  RADQRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKEL  368

Query  365  VAQGMHQLSARRDFPFVAINCGAFPEALLESELFGYEEGAFTGARKGGKTGLIEAAHRGT  424
            +AQG+H+ S+RR+ PFVAINC+AFPE+LLESELFGYEEGAF+G+RKGGK GL+EAAHRGT
Sbjct  369  LAQGIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGT  428

Query  425  LFLDEIGEMPLPLQSRLLRVLQEREVVRLGSTEPTRVDIRVVAATHRALTDAVQAGTFRA  484
            LFLDEIG+MP++LQ+RLLRVLQEREV+RLG+TEP  +D+R++AATH+ L  A++   FR+
Sbjct  429  LFLDEIGDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRT  488

Query  485  DLYYRLNILSIALPPLRERPDDVMPLAVELLVQAARRDPRLLLRIADTEEAARVLAGVAE  544
            DLYYRLNIL +   PLRERP+D+ PL  + + Q      RLL++ ++   AA + + +  
Sbjct  489  DLYYRLNILRLQTTPLRERPEDI-PLICQGISQ------RLLVQ-GQPPGAAGITTLLLP  540

Query  545  PLRRYAWAGNVRELQSVVERIAVELAYTEDASAITQDVLRLIAPEVF-------AHATPG  597
             L R +W+GNVREL++V+ER  +  +   +  ++ ++ L  + PE+F       ++  P+
Sbjct  541  YLVRHSWPGNVRELENVIERAMLSASEIFHEHGVDEHYLARVLPELFEGQPQPRSRKEPS  600

Query  598  KPAVLTLRERSRGVEAEEIRAALAAHGGDRDAVCAALGISKTTLWRRLQ  646
            +     L+  ++  +   I+ +L +  G  D     LGIS+TTLWRRL+
Sbjct  601  RTK--DLHAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLR  647

39) Rpic_3862 in NC_010678


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  350 bits (1315),  Expect = 1e-97, Method: Compositional matrix adjust.
 Identities = 263/649 (41%), Positives = 422/649 (66%), Gaps = 29/649 (4%)

Query  10   DRPRIWACGISRLSDLFLDIAAEYNDRAELRVITRGFEDIV---REIDAAGAERPDVVVA  66
            +RPR +    SRL+ L  ++AA Y D  ++ V+  +  + +   R+++  G  ++DV V 
Sbjct  16   QRPRQR----SRLASLVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRG--KADVFVC  68

Query  67   GGSNGAYLKPRLSLPVVVINPTGFDVMHALARARRDAESVALVTHGDTPEEVRRFVAAYG  126
            +G+ +AYL+ +L+ PV+ +   G D+++AL +AR ++  VAL++      +++   + + 
Sbjct  69   AGATAAYLRRHLARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFT  128

Query  127  MDVVFASYTSRQGAESCvldlrdrgvgvvvgpglvtdlATQAGMNAVFLYSRDSVRAAFD  186
            ++V   +YT+ + A   VL++   G   ++G++ V +LA QAG+++V+  S D+ R A++
Sbjct  129  VQVHQVAYTTLEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALE  188

Query  187  TALEVVQATRRETLRRQRLDNLLQHLRDGVVALDAQGRVEAINQRLATALGIEAKQAIGQ  246
             A+ V+++ R E  +R++LD +LQH+  GV A+D QG V+++N  LA  L +    A+G+
Sbjct  189  EAMGVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGR  248

Query  247  PLLSIAP--NllgllpdtdgdtlgtVQGVNYVIHRGPLTSTGTGAAEGTVFTFQESRAVE  304
            PL  + P  +L   L D +G+    ++  +  +    L     G   G V+T Q+  AV+
Sbjct  249  PLQQLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQ  308

Query  305  RLDRTLRSRQRPQQFSARYRLEDLVGESLAMERVRTLIRRYAKSDATVLVLGESGTGKEM  364
            R D+ +RS +RP  F+ARYRLE+L G S A   +  L +R+A S++T+L+ GESGTGKE+
Sbjct  309  RADQRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKEL  368

Query  365  VAQGMHQLSARRDFPFVAINCGAFPEALLESELFGYEEGAFTGARKGGKTGLIEAAHRGT  424
            +AQG+H+ S+RR+ PFVAINC+AFPE+LLESELFGYEEGAF+G+RKGGK GL+EAAHRGT
Sbjct  369  LAQGIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGT  428

Query  425  LFLDEIGEMPLPLQSRLLRVLQEREVVRLGSTEPTRVDIRVVAATHRALTDAVQAGTFRA  484
            LFLDEIG+MP++LQ+RLLRVLQEREV+RLG+TEP  +D+R++AATH+ L  A++   FR+
Sbjct  429  LFLDEIGDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRT  488

Query  485  DLYYRLNILSIALPPLRERPDDVMPLAVELLVQAARRDPRLLLRIADTEEAARVLAGVAE  544
            DLYYRLNIL +   PLRERP+D+ PL  + + Q      RLL++ ++   AA + + +  
Sbjct  489  DLYYRLNILRLQTTPLRERPEDI-PLICQGISQ------RLLVQ-GQPPGAAGITTLLLP  540

Query  545  PLRRYAWAGNVRELQSVVERIAVELAYTEDASAITQDVLRLIAPEVF-------AHATPG  597
             L R +W+GNVREL++V+ER  +  +   +  ++ ++ L  + PE+F       ++  P+
Sbjct  541  YLVRHSWPGNVRELENVIERAMLSASEIFHEHGVDEHYLARVLPELFEGQPQPRSRKEPS  600

Query  598  KPAVLTLRERSRGVEAEEIRAALAAHGGDRDAVCAALGISKTTLWRRLQ  646
            +     L+  ++  +   I+ +L +  G  D     LGIS+TTLWRRL+
Sbjct  601  RTK--DLHAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLR  647

40) Bcep18194_B0140 in NC_007511


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  348 bits (1305),  Expect = 7e-97, Method: Compositional matrix adjust.
 Identities = 241/561 (43%), Positives = 378/561 (68%), Gaps = 27/561 (4%)

Query  17   RPRIWAMGISRLRDLFREIAGEFDERADVRIVTRAYEDALSAIAE-AGTARPDVIVAAGS  75
            RPR +    SRL  L   +A+ + +  ++ ++  +  +AL +  +    +++DV+V AG+
Sbjct  17   RPRQR----SRLASLVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRGKADVFVCAGA  71

Query  76   NGGFLKTRAQVPVVVVSPTGFDVMQALARARRDASRIALVSAGETPPEVRRFVAAYSLDV  135
             +++L+ +   PV+ +   G D+++AL +AR ++S++AL+S      +++   + ++++V
Sbjct  72   TAAYLRRHLARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFTVQV  131

Query  136  QFASYQSAQEAEACVHELSDRGIETIVGPGLVTDLAASAGMGAVFLYSHASVRKAVDTAL  195
            +  +Y + +EA   V E+S  G  +I+G++ V +LA  AG+ +V+  S+ + RKA++ A+
Sbjct  132  HQVAYTTLEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAM  191

Query  196  EVAYATHAEAFRRQRLDNLLQHLRDGVVALDARGRVEAINERLASALGVEPAAAVGRALV  255
             V  + + E  +R++LD +LQH+  GV A+D +G V+++N  LA  L +  ++A+GR+L 
Sbjct  192  GVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQ  251

Query  256  DLRPEL---RTLRGEDGDALATVRGVRYVVHRG--PLVDRGVTSGSVLTFQESRAVERLD  310
            +L PEL   ++L + +G+    +R     V     P+++ G  +G VLT Q+  AV+R D
Sbjct  252  QLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRAD  311

Query  311  RALRSQPTTQQFAARYALDDVVGASAPMARVRDLVRRYAKSDATVLVLGESGTGKEMIAQ  370
            + +RS      F+ARY L+++ GAS +   + +L +R+A S++T+L+ GESGTGKE++AQ
Sbjct  312  QRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQ  371

Query  371  SLHALSARRSYPFVAVNCGAFPEALLESELFGYEEGAFTGARRGGKTGLFEAAHRGTLFL  430
            ++H  S+RR  PFVA+NC+AFPE+LLESELFGYEEGAF+G+R+GGK GLFEAAHRGTLFL
Sbjct  372  GIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFL  431

Query  431  DEIGEMPPSLQSRLLRVLQEREVIRLGSTEPIRIDVRVIAATHRPLLAAVEAGTFRADLY  490
            DEIG+MP SLQ+RLLRVLQEREV+RLG+TEPI IDVR+IAATH+ L AA+    FR+DLY
Sbjct  432  DEIGDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLY  491

Query  491  YRLNILNVGLPPLRERAADIP----ALAATLLVQaarreprlaerlrdaadaarVLGVTQ  546
            YRLNIL +   PLRER+ DIP    +++  LLVQ             ++++AA +  +  
Sbjct  492  YRLNILRLQTTPLRERPEDIPLICQGISQRLLVQ------------GQPPGAAGITTLLL  539

Query  547  AALARYRWPGNVRELQNVIER  567
            + L R  WPGNVREL+NVIER
Sbjct  540  PYLVRHSWPGNVRELENVIER  560


 Score = 34.0 bits (109),  Expect = 0.027, Method: Compositional matrix adjust.
 Identities = 16/29 (56%), Positives = 20/29 (69%), Gaps = 0/29 (0%)

Query  631  VLDACGGDRDRACAMLGISKTTLWRKLSA  659
             LD+C G  D A   LGIS+TTLWR+L +
Sbjct  620  TLDSCQGSLDEAARRLGISRTTLWRRLRS  648

41) prpR in NC_002928


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  346 bits (1301),  Expect = 1e-96, Method: Compositional matrix adjust.
 Identities = 275/623 (45%), Positives = 419/623 (68%), Gaps = 18/623 (2%)

Query  24   FAAPVIAEYRNRAAIDVVDGTFADALAVARDRIERNAVDAFISAGANASILRANLQAPVA  83
            + A + A Y +   I+V+D + ++AL  ARD  +R   D F+ AGA A+ LR +L  PV 
Sbjct  27   LVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRGKADVFVCAGATAAYLRRHLARPVL  85

Query  84   TIQLGGFDLLQALIRARRIASRVGVVMYGQTLPELDAVKELLNIEITQYAYQTPYHARQG  143
            T+++GG DLL+AL +AR  +S+V+++ Y +   +L+A++ L+ +++ Q AY T  +ARQ+
Sbjct  86   TMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFTVQVHQVAYTTLEEARQA  145

Query  144  FEQLRRDGFQVIVGSSLVVELAEEAGLRGILAYSLASIRQGFEDAIELARVARLEAGRYE  203
              ++ R G + I+GSS VVELAE+AGL+G+L+ S  + R+++E+A+ +    RLE ++  
Sbjct  146  VLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAMGVLDSQRLEIAKRR  205

Query  204  QLNGVLHNLQEAVLAVDRDHRIIAVNPPMRELLDMPNRTLLGQRLDAVEPELSLQPTLDS  263
            +L++VL+++  +V AVD +  + ++NP++ +LL++P  + LG+ L+ + PEL LQ +L+ 
Sbjct  206  HLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQQLCPELDLQQALED  265

Query  264  GRAERAAVQRYARRDWIANRTPILEYGKLVGAALTLYDAHRIQEADsslrmqqrrrqsaa  323
            G +E   V R + +  ++N  PILE G   G  LT  D   +Q AD  +R  +R    +A
Sbjct  266  GGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRADQRIRSTRRPGAFTA  325

Query  324  rhrFDTLLGQSPAFMRAVDTARRYAGTDLRVLIQGESGVGKELFAQSIHNASARAHRPFV  383
            R R++ L G S A    ++ A+R+A+++  +LI GESG GKEL+AQ+IHN S+R H PFV
Sbjct  326  RYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQGIHNESPRRHGPFV  385

Query  384  AINCASLPETLLESELFGYEDGAFTGSRRDGKRGLIEAAHTGTLFLDEIGDMPLSLQTRL  443
            AINCA++PE+LLESELFGYE+GAF+GSR++GK GL+EAAH GTLFLDEIGDMP+SLQTRL
Sbjct  386  AINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMPVSLQTRL  445

Query  444  LRVLQEGEITRLGATTPVPVDVRVLAATHQPLQELVAQRRFRQDLYYRINAlrlplpplr  503
            LRVLQE E+ RLG+T P+++DVR++AATH+ L   + +R FR DLYYR+N LRL   PLR
Sbjct  446  LRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLYYRLNILRLQTTPLR  505

Query  504  erGADIALLATRLVARCLDRLGSPldaeaalaallprlaaYPWPGNVRELENLCERIAVF  563
            ER  DI+L+   +  R L + G P +A +  + LLP L   +WPGNVRELEN+ ER  + 
Sbjct  506  ERPEDIPLICQGISQRLLVQ-GQPPGAAGITTLLLPYLVRHSWPGNVRELENVIERAMLS  564

Query  564  LLQFDDAEAIRHDALRHECPELFE-HPAAMDAPRPER---------------IAQALRQA  607
              ++ + +++ ++ L +  PELFE +P +     P R               I ++L   
Sbjct  565  ASEIFHEHGVDEHYLARVLPELFEGQPQPRSRKEPSRTKDLHAIGKTAQLRYIQETLDSC  624

Query  608  DGNRAQAAAQLGVSRSTLWRWLR  630
            +G+  +AA +LG+SR+TLWR+LR
Sbjct  625  QGSLDEAARRLGISRTTLWRRLR  647

42) prpR in NC_018829


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  346 bits (1298),  Expect = 3e-96, Method: Compositional matrix adjust.
 Identities = 275/623 (45%), Positives = 418/623 (68%), Gaps = 18/623 (2%)

Query  24   FAAPVIAEYRNRAAIDVVDGTFADALAVARDRIERNAVDAFISAGANASILRANLQAPVA  83
            + A + A Y +   I+V+D + ++AL  ARD  +R   D F+ AGA A+ LR +L  PV 
Sbjct  27   LVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRGKADVFVCAGATAAYLRRHLARPVL  85

Query  84   TIQLGGFDLLQALIRARRIASRVGVVMYGQTLPELDAVKELLNIEITQYAYQTPYHARQG  143
            T+++GG DLL+AL +AR  +S+V+++ Y +   +L+A++ L+ +++ Q AY T  +ARQ+
Sbjct  86   TMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFTVQVHQVAYTTLEEARQA  145

Query  144  FEQLRRDGFQVIVGSSLVVELAEEAGLRGILAYSLASIRQGFEDAIELARVARLEAGRYE  203
              ++ R G + I+GSS VVELAE+AGL+G+L+ S  + R+++E+A+ +    RLE ++  
Sbjct  146  VLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAMGVLDSQRLEIAKRR  205

Query  204  QLNGVLHNLQEAVLAVDRDHRIIAVNPPMRELLGMPNRTLLGQRLDAVEPELSLQPTLDS  263
            +L++VL+++  +V AVD +  + ++NP++ +LL +P  + LG+ L+ + PEL LQ +L+ 
Sbjct  206  HLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQQLCPELDLQQALED  265

Query  264  GRAERAAVQRYARRDWIANRTPILEYGKLVGAALTLYDAHRIQEADsslrmqqrrrqsaa  323
            G +E   V R + +  ++N  PILE G   G  LT  D   +Q AD  +R  +R    +A
Sbjct  266  GGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRADQRIRSTRRPGAFTA  325

Query  324  rhrFDTLLGQSPAFMRAVDTARRYAGTDLRVLIQGESGVGKELFAQSIHNASARAHRPFV  383
            R R++ L G S A    ++ A+R+A+++  +LI GESG GKEL+AQ+IHN S+R H PFV
Sbjct  326  RYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQGIHNESPRRHGPFV  385

Query  384  AINCASLPETLLESELFGYEDGAFTGSRRDGKRGLIEAAHTGTLFLDEIGDMPLSLQTRL  443
            AINCA++PE+LLESELFGYE+GAF+GSR++GK GL+EAAH GTLFLDEIGDMP+SLQTRL
Sbjct  386  AINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMPVSLQTRL  445

Query  444  LRVLQEGEITRLGATTPVPVDVRVLAATHQPLQELVAQRRFRQDLYYRINAlrlplpplr  503
            LRVLQE E+ RLG+T P+++DVR++AATH+ L   + +R FR DLYYR+N LRL   PLR
Sbjct  446  LRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLYYRLNILRLQTTPLR  505

Query  504  erGADIALLATRLVARCLDRLGSPldaeaalaallprlaaYPWPGNVRELENLCERIAVF  563
            ER  DI+L+   +  R L + G P +A +  + LLP L   +WPGNVRELEN+ ER  + 
Sbjct  506  ERPEDIPLICQGISQRLLVQ-GQPPGAAGITTLLLPYLVRHSWPGNVRELENVIERAMLS  564

Query  564  LLQFDDAEAIRHDALRHECPELFE-HPAAMDAPRPER---------------IAQALRQA  607
              ++ + +++ ++ L +  PELFE +P +     P R               I ++L   
Sbjct  565  ASEIFHEHGVDEHYLARVLPELFEGQPQPRSRKEPSRTKDLHAIGKTAQLRYIQETLDSC  624

Query  608  DGNRAQAAAQLGVSRSTLWRWLR  630
            +G+  +AA +LG+SR+TLWR+LR
Sbjct  625  QGSLDEAARRLGISRTTLWRRLR  647

43) prpR in NC_002927


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  346 bits (1298),  Expect = 3e-96, Method: Compositional matrix adjust.
 Identities = 275/623 (45%), Positives = 418/623 (68%), Gaps = 18/623 (2%)

Query  24   FAAPVIAEYRNRAAIDVVDGTFADALAVARDRIERNAVDAFISAGANASILRANLQAPVA  83
            + A + A Y +   I+V+D + ++AL  ARD  +R   D F+ AGA A+ LR +L  PV 
Sbjct  27   LVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRGKADVFVCAGATAAYLRRHLARPVL  85

Query  84   TIQLGGFDLLQALIRARRIASRVGVVMYGQTLPELDAVKELLNIEITQYAYQTPYHARQG  143
            T+++GG DLL+AL +AR  +S+V+++ Y +   +L+A++ L+ +++ Q AY T  +ARQ+
Sbjct  86   TMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFTVQVHQVAYTTLEEARQA  145

Query  144  FEQLRRDGFQVIVGSSLVVELAEEAGLRGILAYSLASIRQGFEDAIELARVARLEAGRYE  203
              ++ R G + I+GSS VVELAE+AGL+G+L+ S  + R+++E+A+ +    RLE ++  
Sbjct  146  VLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAMGVLDSQRLEIAKRR  205

Query  204  QLNGVLHNLQEAVLAVDRDHRIIAVNPPMRELLGMPNRTLLGQRLDAVEPELSLQPTLDS  263
            +L++VL+++  +V AVD +  + ++NP++ +LL +P  + LG+ L+ + PEL LQ +L+ 
Sbjct  206  HLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQQLCPELDLQQALED  265

Query  264  GRAERAAVQRYARRDWIANRTPILEYGKLVGAALTLYDAHRIQEADsslrmqqrrrqsaa  323
            G +E   V R + +  ++N  PILE G   G  LT  D   +Q AD  +R  +R    +A
Sbjct  266  GGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRADQRIRSTRRPGAFTA  325

Query  324  rhrFDTLLGQSPAFMRAVDTARRYAGTDLRVLIQGESGVGKELFAQSIHNASARAHRPFV  383
            R R++ L G S A    ++ A+R+A+++  +LI GESG GKEL+AQ+IHN S+R H PFV
Sbjct  326  RYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQGIHNESPRRHGPFV  385

Query  384  AINCASLPETLLESELFGYEDGAFTGSRRDGKRGLIEAAHTGTLFLDEIGDMPLSLQTRL  443
            AINCA++PE+LLESELFGYE+GAF+GSR++GK GL+EAAH GTLFLDEIGDMP+SLQTRL
Sbjct  386  AINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMPVSLQTRL  445

Query  444  LRVLQEGEITRLGATTPVPVDVRVLAATHQPLQELVAQRRFRQDLYYRINAlrlplpplr  503
            LRVLQE E+ RLG+T P+++DVR++AATH+ L   + +R FR DLYYR+N LRL   PLR
Sbjct  446  LRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLYYRLNILRLQTTPLR  505

Query  504  erGADIALLATRLVARCLDRLGSPldaeaalaallprlaaYPWPGNVRELENLCERIAVF  563
            ER  DI+L+   +  R L + G P +A +  + LLP L   +WPGNVRELEN+ ER  + 
Sbjct  506  ERPEDIPLICQGISQRLLVQ-GQPPGAAGITTLLLPYLVRHSWPGNVRELENVIERAMLS  564

Query  564  LLQFDDAEAIRHDALRHECPELFE-HPAAMDAPRPER---------------IAQALRQA  607
              ++ + +++ ++ L +  PELFE +P +     P R               I ++L   
Sbjct  565  ASEIFHEHGVDEHYLARVLPELFEGQPQPRSRKEPSRTKDLHAIGKTAQLRYIQETLDSC  624

Query  608  DGNRAQAAAQLGVSRSTLWRWLR  630
            +G+  +AA +LG+SR+TLWR+LR
Sbjct  625  QGSLDEAARRLGISRTTLWRRLR  647

44) prpR in NC_018828


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  345 bits (1294),  Expect = 6e-96, Method: Compositional matrix adjust.
 Identities = 274/623 (44%), Positives = 417/623 (67%), Gaps = 18/623 (2%)

Query  24   FAAPVIAEYRNRAAIDVVDGTFADALAVARDRIERNAVDAFISAGANASILRANLQAPVA  83
            + A + A Y +   I+V+D + ++AL  ARD  +R   D F+ AGA A+ LR +L  PV 
Sbjct  27   LVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRGKADVFVCAGATAAYLRRHLARPVL  85

Query  84   TIQLGGFDLLQALIRARRIASRVGVVMYGQTLPELDAVKELLNIEITQYAYQTPYHARQG  143
            T+++GG DLL+AL +AR  +S+V+++ Y +   +L+A++ L+ +++ Q AY T  +ARQ+
Sbjct  86   TMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFTVQVHQVAYTTLEEARQA  145

Query  144  FEQLRRDGFQVIVGSSLVVELAEEAGLRGILAYSLASIRQGFEDAIELARVARLEAGRYE  203
              ++ R G + I+GSS VVELAE+AGL+G+L+ S  + R+++E+A+ +    RLE ++  
Sbjct  146  VLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAMGVLDSQRLEIAKRR  205

Query  204  QLNGVLHNLQEAVLAVDRDHRIIAVNPPMRELLGMPNRTLLGQRLDAVEPELSLQPTLDS  263
            +L++VL+++  +V AVD +  + ++NP++ +LL +P  + LG+ L+ + PEL LQ +L+ 
Sbjct  206  HLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQQLCPELDLQQALED  265

Query  264  GRAERAAVQRYARRDWIANRTPILEYGKLVGAALTLYDAHRIQEADsslrmqqrrrqsaa  323
            G +E   V R + +  ++N  PILE G   G  LT  D   +Q AD  +R  +R    +A
Sbjct  266  GGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRADQRIRSTRRPGAFTA  325

Query  324  rhrFDTLLGQSPAFMRAVDTARRYAGTDLRVLIQGESGVGKELFAQSIHNARARAHRPFV  383
            R R++ L G S A    ++ A+R+A+++  +LI GESG GKEL+AQ+IHN  +R H PFV
Sbjct  326  RYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQGIHNESPRRHGPFV  385

Query  384  AINCASLPETLLESELFGYEDGAFTGSRRDGKRGLIEAAHTGTLFLDEIGDMPLSLQTRL  443
            AINCA++PE+LLESELFGYE+GAF+GSR++GK GL+EAAH GTLFLDEIGDMP+SLQTRL
Sbjct  386  AINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMPVSLQTRL  445

Query  444  LRVLQEGEITRLGATTPVPVDVRVLAATHQPLQELVAQRRFRQDLYYRINAlrlplpplr  503
            LRVLQE E+ RLG+T P+++DVR++AATH+ L   + +R FR DLYYR+N LRL   PLR
Sbjct  446  LRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLYYRLNILRLQTTPLR  505

Query  504  erGADIALLATRLVARCLDRLGSPldaeaalaallprlaaYPWPGNVRELENLCERIAVF  563
            ER  DI+L+   +  R L + G P +A +  + LLP L   +WPGNVRELEN+ ER  + 
Sbjct  506  ERPEDIPLICQGISQRLLVQ-GQPPGAAGITTLLLPYLVRHSWPGNVRELENVIERAMLS  564

Query  564  LLQFDDAEAIRHDALRHECPELFE-HPAAMDAPRPER---------------IAQALRQA  607
              ++ + +++ ++ L +  PELFE +P +     P R               I ++L   
Sbjct  565  ASEIFHEHGVDEHYLARVLPELFEGQPQPRSRKEPSRTKDLHAIGKTAQLRYIQETLDSC  624

Query  608  DGNRAQAAAQLGVSRSTLWRWLR  630
            +G+  +AA +LG+SR+TLWR+LR
Sbjct  625  QGSLDEAARRLGISRTTLWRRLR  647

45) prpR in NC_021294


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  345 bits (1294),  Expect = 6e-96, Method: Compositional matrix adjust.
 Identities = 260/632 (42%), Positives = 416/632 (66%), Gaps = 25/632 (3%)

Query  15   SKLRDLYRDVASEYDQIADLRIVARGFEDAVH---DIEHAGADRPDVIVAAGSNGSYLKA  71
            S+L  L  ++A+ Y ++ ++ ++  +  +A++   D+E+ G  ++DV+V AG+ ++YL+ 
Sbjct  22   SRLASLVAGLAAGYPDV-HIEVLDTSVSEALQTARDLEQRG--KADVFVCAGATAAYLRR  78

Query  72   RTGVPVVLVAPTGFDVMHALARAKREADSVALVTHGETPPELKRFFAAFGMQVESASYLA  131
            + + PV+ +   G D+++AL +A+ ++  VAL++      +L+   + F +QV+  +Y +
Sbjct  79   HLARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFTVQVHQVAYTT  138

Query  132  AEDAEACVLDLRDRGVKAIVGPGLVTELAEAAGLKSVFLYSRASVQAAIDTALDVAHatl  191
             E+A   VL++   G ++I+G++ V ELAE AGL +V+  S  + + A++ A++V ++  
Sbjct  139  LEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAMGVLDSQR  198

Query  192  aatlrrrrlDQVLQNLRDGVIALDAQGRIEALSGKMAQLLRLSPSQAVGrrlae--lape  249
                +RR+LD VLQ++  GV A+D QG +++L+  +AQLL L+ S A+GR L +     +
Sbjct  199  LEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQQLCPELD  258

Query  250  vaaavpSAPGESLETVRGASYVVHRSAWSD-GSDEAGGAIVTFQESVALQRMDRSVRTRQ  308
            +  A+  + GE    +R +S  V  +  +   ++E  G ++T Q+  A+QR D+ +R+ +
Sbjct  259  LQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRADQRIRSTR  318

Query  309  RATQLSARYVIGDLLGesaaierarermrryarSDATVLIRGESGTGKELAAQGIHNASA  368
            R+  ++ARY + +L G S A     +  +R+A S++T+LI GESGTGKEL AQGIHN S+
Sbjct  319  RPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQGIHNESP  378

Query  369  RREFAFVALNCGAFPETLLESELFGYEEGAFTGARRGGKPGLIETAHRGTLFLDEIGEMP  428
            RR+ +FVA+NC+AFPE+LLESELFGYEEGAF+G+R+GGKPGL+E+AHRGTLFLDEIG+MP
Sbjct  379  RRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMP  438

Query  429  LPLQSRLLRVLQEREVVRLGSTEPLQVDVRIVAATHRALTERVEKGEFRADLFYRLNILN  488
            ++LQ+RLLRVLQEREV+RLG+TEP+ +DVRI+AATH+ L   +   EFR+DL+YRLNIL 
Sbjct  439  VSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLYYRLNILR  498

Query  489  LALPPLRERAADIPL----LAAHLLAQARKSNPDTAMASLEPVLARLSTYRWPGNVRELQ  544
            L   PLRER+ DIPL    ++ +LL Q++ + +    + L P L R     WPGNVREL+
Sbjct  499  LQTTPLRERPEDIPLICQGISQRLLVQGQPPGAAGITTLLLPYLVR---HSWPGNVRELE  555

Query  545  NVIERIAVEM-----EHAPGEPLTPALLEEI---APEVVTAETVDQADLTLKERAKRTQA  596
            NVIER  +       EH+ +E   + +L E+    P+  +     ++   L   +K +Q 
Sbjct  556  NVIERAMLSASEIFHEHGVDEHYLARVLPELFEGQPQPRSRKEPSRTK-DLHAIGKTAQL  614

Query  597  DEVRAVLDAFDGDREKACAALGISKTTLWRKL  628
              ++  LD+ +G  + A   LGIS+TTLWR+L
Sbjct  615  RYIQETLDSCQGSLDEAARRLGISRTTLWRRL  646

46) prpR in NC_019382


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  343 bits (1286),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 275/623 (45%), Positives = 419/623 (68%), Gaps = 18/623 (2%)

Query  24   FAAPVIAEYRNRAAIDVVDGTFADALAVARDRIERNAVDAFISAGANASILRANLQAPVA  83
            + A + A Y +   I+V+D + ++AL  ARD  +R   D F+ AGA A+ LR +L  PV 
Sbjct  27   LVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRGKADVFVCAGATAAYLRRHLARPVL  85

Query  84   TIQLGGFDLLQALIRARRIASRVGVVMYGQTLPELDAVKELLNIEITQYAYQTPYHARQG  143
            T+++GG DLL+AL +AR  +S+V+++ Y +   +L+A++ L+ +++ Q AY T  +ARQ+
Sbjct  86   TMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFTVQVHQVAYTTLEEARQA  145

Query  144  FEQLRRDGFQVIVGSSLVVELAEEAGLRGILAYSLASIRQGFEDAIELARVARLEAGRYE  203
              ++ R G + I+GSS VVELAE+AGL+G+L+ S  + R+++E+A+ +    RLE ++  
Sbjct  146  VLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAMGVLDSQRLEIAKRR  205

Query  204  QLNGVLHNLQEAVLAVDRDHRIIAVNPPMRELLGMPNRTLLGQRLDAVEPELSLQPTLDS  263
            +L++VL+++  +V AVD +  + ++NP++ +LL +P  + LG+ L+ + PEL LQ +L+ 
Sbjct  206  HLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQQLCPELDLQQALED  265

Query  264  GRAERAAVQRYARRDWIANRTPILEYGKLVGAALTLYDAHRIQEADsslrmqqrrrqsaa  323
            G +E   V R + +  ++N  PILE G   G  LT  D   +Q AD  +R  +R    +A
Sbjct  266  GGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRADQRIRSTRRPGAFTA  325

Query  324  rhrFDTLLGQSPAFMRAVDTARRYAGTDLRVLIQGESGVGKELFAQSIHNASARAHRPFV  383
            R R++ L G S A    ++ A+R+A+++  +LI GESG GKEL+AQ+IHN S+R H PFV
Sbjct  326  RYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQGIHNESPRRHGPFV  385

Query  384  AINCASLPETLLESELFGYEDGAFTGSRRDGKRGLIEAAHTGTLFLDEIGDMPLSLQTRL  443
            AINCA++PE+LLESELFGYE+GAF+GSR++GK GL+EAAH GTLFLDEIGDMP+SLQTRL
Sbjct  386  AINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMPVSLQTRL  445

Query  444  LRVLQEGEITRLGATTPVPVDVRVLAATHQPLQELVAQRRFRQDLYYRINAlrlplpplr  503
            LRVLQE E+ RLG+T P+++DVR++AATH+ L   + +R FR DLYYR+N LRL   PLR
Sbjct  446  LRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLYYRLNILRLQTTPLR  505

Query  504  erGADIALLATRLVARCLDRLGSPldaeaalaallprlaaYPWPGNVRELENLCERIAVF  563
            ER  DI+L+   +  R L + G P +A +  + LLP L   +WPGNVRELEN+ ER  + 
Sbjct  506  ERPEDIPLICQGISQRLLVQ-GQPPGAAGITTLLLPYLVRHSWPGNVRELENVIERAMLS  564

Query  564  LLQFDDAEAIRHDALRHECPELFE---------------HLAAMDAPRPER-IAQALRQA  607
              ++ + +++ ++ L +  PELFE               +L A++     R I ++L   
Sbjct  565  ASEIFHEHGVDEHYLARVLPELFEGQPQPRSRKEPSRTKDLHAIGKTAQLRYIQETLDSC  624

Query  608  DGNRAQAAAQLGVSRSTLWRWLR  630
            +G+  +AA +LG+SR+TLWR+LR
Sbjct  625  QGSLDEAARRLGISRTTLWRRLR  647

47) RBRH_00395 in NC_014718


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  343 bits (1287),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 265/660 (41%), Positives = 422/660 (64%), Gaps = 30/660 (4%)

Query  38   IVQPDAVARPRLWAMGISRLRDLFLDIAREYDGRAQLRVVSRGFEDAVHEI-NVAGSMRP  96
            +V    + RPR +    SRL  L  ++A  Y +  ++ V+  +  +A++   ++    ++
Sbjct  9    VVLVSHLQRPRQR----SRLASLVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRGKA  63

Query  97   DVVVAGGSNGAYLKARVNVPVVLIHPTGFDVMHALAQARRDAALVALVTHGDIPDEVRQF  156
            DV V +G+ +AYL+ ++  PV+ ++  G D+++AL QAR +++ VAL++   I  +++  
Sbjct  64   DVFVCAGATAAYLRRHLARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAM  123

Query  157  THAYGVDVVLGSYRSVQDAQACVQDLRERgvgavvgpglvadlaaHAGMHAVFLYSRACV  216
               + V+V   +Y ++++A+  V ++   G  +++G++ V +LA +AG+H+V+  S    
Sbjct  124  RTLFTVQVHQVAYTTLEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTA  183

Query  217  RAAFDTALEVVQatraealrrarldnllQHLRDGVVALDAEGRVEAMNQRLSDALGIGAT  276
            R A++ A+ V+++ R E  +R +LD +LQH+  GV A+D +G V+++N  L++ L +  +
Sbjct  184  RKALEEAMGVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVS  243

Query  277  QAAGRTLLDLAPCLA--DSLPDADGDTLSVIRGVSYVVHRGPLAG-PCGEQGGTVLTFQE  333
             A GR L +L P L   ++L D++G+   VIR  S  V    L+    GE+ G VLT Q+
Sbjct  244  SALGRPLQQLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQD  303

Query  334  SRAVERLDRTLRSRPRAQQLTARYDLDDLVGECAPIERVRVLVRRYARSDATVLVLGESG  393
              AV+R D+ +RS  R+  +TARY L++L G   +   +  L +R+A S++T+L+ GESG
Sbjct  304  ITAVQRADQRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESG  363

Query  394  TGKEMVAQSIHRLSARRDFAFVAINCGAFPEALLESELFGYEEGAFTGARRGGKVGLIEA  453
            TGKE++AQ+IH  S+RR+ +FVAINC+AFPE+LLESELFGYEEGAF+G+R+GGK GL+EA
Sbjct  364  TGKELLAQGIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEA  423

Query  454  AHRGTLFLDEIGEMSLPLQSRLLRVLQEREVVRLGSTEPVRVDIRVIAATHRALIDGIES  513
            AHRGTLFLDEIG+M+++LQ+RLLRVLQEREV+RLG+TEP+ +D+R+IAATH+ L  ++  
Sbjct  424  AHRGTLFLDEIGDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKD  483

Query  514  GTFRADLYYRLNILSIALPPLRERPGDVMLL---AVEWLLQAARREPRLAVRVPDTNEAT  570
              FR+DLYYRLNIL +   PLRERP D+ L+     ++LL  ++         P++   T
Sbjct  484  REFRTDLYYRLNILRLQTTPLRERPEDIPLICQGISQRLLVQGQP--------PGAAGIT  535

Query  571  RILAPVAAPLCAYRWPGNVRELQNVIERIAVELADTEAEDDVALTVAVLRTIAPELFDTP  630
             +L P    L    WPGNVREL+NVIER    L+ +E  ++ ++    L  + PELF+  
Sbjct  536  TLLLPY---LVRHSWPGNVRELENVIERAM--LSASEIFHEHGVDEHYLARVLPELFEGQ  590

Query  631  AGPVVPASTLRERSRHVEADE-----IRAALKAHDGDRDAACQALGISKTTLWRKLNAAR  685
            + P       R +  H  +       I+ +L + +G  D A + LGIS+TTLWR+L +AR
Sbjct  591  PQPRSRKEPSRTKDLHAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLRSAR  650

48) Anae109_2878 in NC_009675


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  338 bits (1269),  Expect = 5e-94, Method: Compositional matrix adjust.
 Identities = 286/637 (45%), Positives = 423/637 (67%), Gaps = 13/637 (2%)

Query  17   SRLRHVFESVAPLLADVAEVRVFDKGFEEALQVSRALVEAGEEVDAFVAAGSNGAYLRDH  76
            SRL  +  ++A+  +DV ++ V+D +  EALQ +R L + G   D FV AG+ +AYLR H
Sbjct  22   SRLASLVAGLAAGYPDV-HIEVLDTSVSEALQTARDLEQRGKA-DVFVCAGATAAYLRRH  79

Query  77   ASVPVVVVMASTLDALQALVQARKLSNRIAVVNFRRVVAGLEQGIGLMEDTTIVQRPYVT  136
             + PV+ +  +  D L+AL QAR  S+++A++++ R+  +L+    L     + Q +Y T
Sbjct  80   LARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLF-TVQVHQVAYTT  138

Query  137  PEDAKAHVADLAAQgfgvvvgpgpvCDLAERAGLPSVLLYGQDSLSEairhaaevahiar  196
             E+A+  V +++  G   ++G++ V +LAE+AGL +VL  ++D+   A+ +A  V +  R
Sbjct  139  LEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAMGVLDSQR  198

Query  197  aaeaKRLDVERVLRHLDVGVVAVDGEERIQTVNPALQRLLGVTAPELTGRRLSAVAPELS  256
               AKR +++ VL+H+  GV AVD +  +Q++NPAL +LL +  +   GR L  + PEL 
Sbjct  199  LEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQQLCPELD  258

Query  257  LARVLETGTPELDVVQRLGSRTLVVSRVPLREGGAQRGALLTCQDAAVIQRLERGLRTEH  316
            L + LE G  E + V RLGS+++V + +P+ E G + G +LTCQD + +QR ++ +R+ +
Sbjct  259  LQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRADQRIRSTR  318

Query  317  RPPRFVARFDLGGLVGASPAIAGVRALAERYARTDATVLITGESGTGKEMVAQGIHRASR  376
            RP  F AR+ L  L GAS A   +  LA R+A +++T+LITGESGTGKE++AQGIH  S 
Sbjct  319  RPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQGIHNESP  378

Query  377  RRDRPFVAVNCAAFPETLLEAELFGHEEGAFTGARRGGRPGLFEAAHTGTLFLDEIGDvp  436
            RR+ PFVA+NCAAFPE+LLE+ELFG EEGAF+G+R+GG+PGLFEAAH GTLFLDEIGD+P
Sbjct  379  RRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMP  438

Query  437  ttlqtrllrvlqerqvlrlGSNHPTPVDVRVVAATHRDLRAATARGEFREDLFYRLNILP  496
             +LQTRLLRVLQER+VLRLG+ +P ++DVR++AATH+DL AA    EFR DL+YRLNIL 
Sbjct  439  VSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLYYRLNILR  498

Query  497  LHVPPLRERGEDVQAIAAELLKRALLRHGEPDahpralalvlprlaGYAWPGNVRELENV  556
            L+  PLRER ED+  I   + +R LL +G+P + +   +L+LP L   +WPGNVRELENV
Sbjct  499  LQTTPLRERPEDIPLICQGISQR-LLVQGQPPGAAGITTLLLPYLVRHSWPGNVRELENV  557

Query  557  LER----VAALFVDRGPRARIPEEELRAAIPEllarpgatpaapaapradlraarrEQER  612
            +ER     + +F ++G    + E+ L   +PEL+       +   ++R+    A     +
Sbjct  558  IERAMLSASEIFHEHG----VDEHYLARVLPELFEGQPQPRSRKEPSRTKDLHAIGKTAQ  613

Query  613  AH-VERVLAECGGNQAEAARLLGIGRTTLYRKLGRVR  648
             + ++  L  C G+  EAAR LGI+RTTL R+L   R
Sbjct  614  LRYIQETLDSCQGSLDEAARRLGISRTTLWRRLRSAR  650

49) BC1003_3764 in NC_014540


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  337 bits (1265),  Expect = 1e-93, Method: Compositional matrix adjust.
 Identities = 237/551 (44%), Positives = 379/551 (69%), Gaps = 14/551 (2%)

Query  54   SRLQSLCETIAPRYAERARFFPVREGYGAAVTALQRYVDAGSVDVVLAAGSNGAYLRDHL  113
            SRL SL   +A+ Y++  ++  +  + + A+ + +   + G  DV + AG+ +AYLR HL
Sbjct  22   SRLASLVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRGKADVFVCAGATAAYLRRHL  80

Query  114  SVPVVMVKVNGFDVLSAITHATSTWPGAAIGLVLHETVAHELAELDGWLNVRLTQRAYRS  173
            + PV+ ++V G D+L A+ +A     ++ ++L+  + + ++L  +   + V++ Q AY +
Sbjct  81   ARPVLTMRVGGGDLLRALEQARE--HSSHVALLSYNRIDRDLQAMRTLFTVQVHQVAYTT  138

Query  174  ADEVRTAVNNLADAGCRVIIGPGMACDLAQQAGLASVFLYSLGAVEEAFERSVELARVSR  233
             +E R AV +++  GCR IIG++   +LA+QAGL +V+  S ++   A+E ++ +    R
Sbjct  139  LEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAMGVLDSQR  198

Query  234  QKESKRVRLNTIVAHLRDGVAAFDDAGQLEAVNPAMLDLLGLQRERDVSAGLVRTVGPW-  292
               +KR +L++++ H+  GVAA D+ G ++++NPA+ +LL L     VS++L R +    
Sbjct  199  LEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELP----VSSALGRPLQQLC  254

Query  293  ----LREALERGGAVDERIQQIGERSLIVNCVPILEQGVRSGSVVTVQDALVAQRIDRSL  348
                L++ALE GG+ ++R+ ++G ++++ N +PILE+G R+G V+T QD    QR D+ +
Sbjct  255  PELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRADQRI  314

Query  349  RTSQRPKHLVARHRLEDLVGESaalqrvrrlaraaaaHDVTVLLSGESGTGKELVAQGIH  408
            R+++RP  + AR RLE+L G S A + + +LA+  AA + T+L++GESGTGKEL+AQGIH
Sbjct  315  RSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQGIH  374

Query  409  NASRRRGNPFVAFNCAALPEGLIESELFGHEEGAFTGARRGGKPGLFEIAHTGTIFLDEI  468
            N S RR  PFVA+NCAA+PE+L+ESELFG EEGAF+G+R+GGKPGLFE AH GT+FLDEI
Sbjct  375  NESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEI  434

Query  469  GEMPAALQSRLLRVLQEREVMKLGSGRATPVDVRVIAATHRDLHALVEQGAFRADLYFRL  528
            G+MP +LQ+RLLRVLQEREV++LG+  + ++DVR+IAATH+DL A + +  FR+DLY+RL
Sbjct  435  GDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLYYRL  494

Query  529  NLLQIELPPLRERRADavalarhllsrsalQYKLPEAAHERVLAFLAPLFDGYAWPGNVR  588
            N+L+++  PLRER  D   + + +  R  +Q + P AA   + ++L P +   +WPGNVR
Sbjct  495  NILRLQTTPLRERPEDIPLICQGISQRLLVQGQPPGAAG--ITTLLLPYLVRHSWPGNVR  552

Query  589  ELENLLARAAI  599
            ELEN++ RA +
Sbjct  553  ELENVIERAML  563


 Score = 37.9 bits (124),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 16/33 (49%), Positives = 24/33 (73%), Gaps = 0/33 (0%)

Query  697  VLSALEQCQGNRAAASRMLGIGRTTLWRLLKAD  729
            +  +L+ CQG+   A+R LGI+RTTLWR L++ 
Sbjct  617  IQETLDSCQGSLDEAARRLGISRTTLWRRLRSA  649

50) CNE_BB1p08000 in NC_015727


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  330 bits (1237),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 248/617 (41%), Positives = 406/617 (66%), Gaps = 19/617 (3%)

Query  36   QVSVVDAHFDEALAEIQRRQESAPCDVVVSAGANAEFLRSHLSIPVVSVRVGGHDVMAAI  95
            ++ V+D+   EAL   +  ++ +  DV V AGA A +LR HL+ PV+++RVGG D++ A+
Sbjct  39   HIEVLDTSVSEALQTARDLEQRGKADVFVCAGATAAYLRRHLARPVLTMRVGGGDLLRAL  98

Query  96   VRARAISERLAVVLHRDAGDDMAKFAEVFALPIAFRSYESAPDVRNVIDELRRLDTRvvv  155
             +AR  S ++A++     + D+     +F++ +   +Y +  + R+ + E+ RL+ R ++
Sbjct  99   EQAREHSSHVALLSYNRIDRDLQAMRTLFTVQVHQVAYTTLEEARQAVLEVSRLGCRSII  158

Query  156  gagvvmqaaaaagmagvFLYSVDSVRLALEDAIALANAKAVERSRYSLLNSVLYHLGDGV  215
            G++ V++ A  AG+ GV+  S D+ R ALE+A+++ +++ +E ++   L++VL H+  GV
Sbjct  159  GSSTVVELAEQAGLHGVLSLSEDTARKALEEAMGVLDSQRLEIAKRRHLDAVLQHIPSGV  218

Query  216  VALDAAGRLIAANPAAEKLVGSPLIPSTGKTLSLPFPALRPGRALSDGEHDSGAVEEIDG  275
             A+D  G + + NPA  +L+  P+ ++ G+ L    P L   +AL DG  +   V  +++
Sbjct  219  AAVDNQGVVQSLNPALAQLLELPVSSALGRPLQQLCPELDLQQALEDGGGEENRVIRLGS  278

Query  276  RTVIIDRAPLYEGNVRVGAVLTLRQPTRVERAFNRLRTHRYTHSQTARYKLEDIVGASPA  335
            ++V+ +  P+ E   R G VLT ++ T V+RA +R+R+ R   + TARY+LE++ GAS A
Sbjct  279  HAVVSNLLPILENGERTGLVLTCQDITAVQRADQRIRSTRRPGAFTARYRLEQLNGASKA  338

Query  336  MAATITRCRVAAERSDATVLITGPTGVGKELLAQGLHNASRRRRHPFLAVNCGALPETLL  395
                +   +  A  S++T+LITG +G GKELLAQG+HN S RR+ PF+A+NC+A+PE+LL
Sbjct  339  NREMLQLAKRFAA-SHSTILITGESGTGKELLAQGIHNESPRRHGPFVAINCAAFPESLL  397

Query  396  ETELFGYEEGAFTGARRNGKAGLFEAANEGTVFLDEVAEMPSLLQTRLLRVLQEREVTRV  455
            E+ELFGYEEGAF+G+R+ GK+GLFEAA+ GT+FLDE+++MP  LQTRLLRVLQEREV R+
Sbjct  398  ESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMPVSLQTRLLRVLQEREVLRL  457

Query  456  GGTDTLQVNVRIVAATHRDLWERVREGAFRKDLFYRLSVLRVQVPPLRERPEDRDSLATA  515
            GGT+ + ++VRI+AATH+DL   +++  FR DL+YRL++LR+Q  PLRERPED   +  +
Sbjct  458  GGTEPISIDVRIIAATHKDLGAAMKDREFRTDLYYRLNILRLQTTPLRERPEDIPLICQG  517

Query  516  LVSAAMRRVQLADL--LDTVLPAALVVARQHAWPGNVRELENFAERVAMACLEA--GAAV  571
            +    + + Q ++   + T+L + LV   +H+WPGNVRELEN  ER  ++  E     +V
Sbjct  518  ISQRLLVQGQPPGAAGITTLLLPYLV---RHSWPGNVRELENVIERAMLSASEIFHEHGV  574

Query  572  PARQLAALLDRDPDHYDSLA---AMPEPPDTT-LSGMTIAN----VKEILKECGGNRTQA  623
              + LA +L   P+ +++ +   +  EP+ T  L ++  +     ++E L  C G+  +A
Sbjct  575  DEHYLARVL---PELFEGQPQPRSRKEPSRTKDLHAIGKTAQLRYIQETLDSCQGSLDEA  631

Query  624  AKRLGIGRSTLWRLLKN  640
            A+RLGI+R+TLWR L++
Sbjct  632  ARRLGISRTTLWRRLRS  648

51) GYMC52_3628 in NC_014916


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  326 bits (1224),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 239/589 (41%), Positives = 391/589 (67%), Gaps = 13/589 (2%)

Query  45   NSADVIVASGANATAIEEQGLSIPVVRIKVTGFDLVNALWLAKRMNRQAVVMSYQEPIPQ  104
              ADV+V +GA A+ +  + L+ PV+ ++V G DL+ AL  A+  + +  ++SY+    +
Sbjct  61   GKADVFVCAGATAAYLRRH-LARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRD  119

Query  105  LEQFRDLFRVDLMQEAYDGVHDAQEKLLRILGSGKSVIIGASLVNELTERMGGHSIFIYS  164
            L+  R LF V++ Q AY  +++A++ +L +   G   IIG+S V EL+E+ G H+++  S
Sbjct  120  LQAMRTLFTVQVHQVAYTTLEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLS  179

Query  165  RSSIRLALETAVELADQRRSEIEKRQKIQAMMRAVHEGILYVDTNGLLMEINPVAEKLLG  224
              + R ALE A+ + D +R EI KR+ ++A+++ +  G+  VD +G++  +NP   +LL 
Sbjct  180  EDTARKALEEAMGVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLE  239

Query  225  VSAQDVIGKSIDKVAPEIKLDDVFKRGKPLLNVAQKTKQGMLLVNRIPVVHQGELIGAVA  284
            ++    +G++++++ PE+ L++ +  G    N   +     ++ N +P++++GE  G V 
Sbjct  240  LPVSSALGRPLQQLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVL  299

Query  285  TIQDAQAVQKAEKAIRHRVYSKGLLAKATFEHIIGKNSTFMKLIDKAQHYAQTDATILIR  344
            T QD  AVQ+A++ IR    + ++ A+  +E++ G + +   +++ A+++A +++TILI 
Sbjct  300  TCQDITAVQRADQRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILIT  359

Query  345  GETGTGKELFAQSIHNASNRNRHPFVAVNCAALPESILESELFGYEEGAFTGARKGGKQG  404
            GE+GTGKEL+AQ+IHN S R + PFVA+NCAA+PES+LESELFGYEEGAF+G+RKGGK G
Sbjct  360  GESGTGKELLAQGIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPG  419

Query  405  LFELAHRGTIFLDEIGEMSLPLQSRLLRVLQEKEVMRLGSDMVIPIDVRIIAATNRDLKS  464
            LFE AHRGT+FLDEIG+M+++LQ+RLLRVLQE+EV+RLG+   I+IDVRIIAAT++DL +
Sbjct  420  LFEAAHRGTLFLDEIGDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGA  479

Query  465  MVKDGLFRQDLYYRLNVLSIelpplrerlddlpdlfrfflKNYKLDKQL--IEKVLSIML  522
             +KD  FR DLYYRLN+L ++  PLRER +D+P + + + +   ++ Q      + +++L
Sbjct  480  AMKDREFRTDLYYRLNILRLQTTPLRERPEDIPLICQGISQRLLVQGQPPGAAGITTLLL  539

Query  523  PVLCHHNWPGNIRELENIAER----VSVLLKAHVTMDEVLAEVKKELFGSHIEILDSTDL  578
            P L +H+WPGN+RELEN+ ER     S ++  H   ++ LA V  ELF ++ +     + 
Sbjct  540  PYLVRHSWPGNVRELENVIERAMLSASEIFHEHGVDEHYLARVLPELFEGQPQPRSRKEP  599

Query  579  TK-----EVENWERQR-ILQVLREVRGSKTKAAALLGISRTTLWRKIKD  621
            ++      + +  + R I + L   +GS   AA  LGISRTTLWR+++ 
Sbjct  600  SRTKDLHAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLRS  648

52) GYMC61_3598 in NC_013412


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  326 bits (1224),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 239/589 (41%), Positives = 391/589 (67%), Gaps = 13/589 (2%)

Query  45   NSADVIVASGANATAIEEQGLSIPVVRIKVTGFDLVNALWLAKRMNRQAVVMSYQEPIPQ  104
              ADV+V +GA A+ +  + L+ PV+ ++V G DL+ AL  A+  + +  ++SY+    +
Sbjct  61   GKADVFVCAGATAAYLRRH-LARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRD  119

Query  105  LEQFRDLFRVDLMQEAYDGVHDAQEKLLRILGSGKSVIIGASLVNELTERMGGHSIFIYS  164
            L+  R LF V++ Q AY  +++A++ +L +   G   IIG+S V EL+E+ G H+++  S
Sbjct  120  LQAMRTLFTVQVHQVAYTTLEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLS  179

Query  165  RSSIRLALETAVELADQRRSEIEKRQKIQAMMRAVHEGILYVDTNGLLMEINPVAEKLLG  224
              + R ALE A+ + D +R EI KR+ ++A+++ +  G+  VD +G++  +NP   +LL 
Sbjct  180  EDTARKALEEAMGVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLE  239

Query  225  VSAQDVIGKSIDKVAPEIKLDDVFKRGKPLLNVAQKTKQGMLLVNRIPVVHQGELIGAVA  284
            ++    +G++++++ PE+ L++ +  G    N   +     ++ N +P++++GE  G V 
Sbjct  240  LPVSSALGRPLQQLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVL  299

Query  285  TIQDAQAVQKAEKAIRHRVYSKGLLAKATFEHIIGKNSTFMKLIDKAQHYAQTDATILIR  344
            T QD  AVQ+A++ IR    + ++ A+  +E++ G + +   +++ A+++A +++TILI 
Sbjct  300  TCQDITAVQRADQRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILIT  359

Query  345  GETGTGKELFAQSIHNASNRNRHPFVAVNCAALPESILESELFGYEEGAFTGARKGGKQG  404
            GE+GTGKEL+AQ+IHN S R + PFVA+NCAA+PES+LESELFGYEEGAF+G+RKGGK G
Sbjct  360  GESGTGKELLAQGIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPG  419

Query  405  LFELAHRGTIFLDEIGEMSLPLQSRLLRVLQEKEVMRLGSDMVIPIDVRIIAATNRDLKS  464
            LFE AHRGT+FLDEIG+M+++LQ+RLLRVLQE+EV+RLG+   I+IDVRIIAAT++DL +
Sbjct  420  LFEAAHRGTLFLDEIGDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGA  479

Query  465  MVKDGLFRQDLYYRLNVLSIelpplrerlddlpdlfrfflKNYKLDKQL--IEKVLSIML  522
             +KD  FR DLYYRLN+L ++  PLRER +D+P + + + +   ++ Q      + +++L
Sbjct  480  AMKDREFRTDLYYRLNILRLQTTPLRERPEDIPLICQGISQRLLVQGQPPGAAGITTLLL  539

Query  523  PVLCHHNWPGNIRELENIAER----VSVLLKAHVTMDEVLAEVKKELFGSHIEILDSTDL  578
            P L +H+WPGN+RELEN+ ER     S ++  H   ++ LA V  ELF ++ +     + 
Sbjct  540  PYLVRHSWPGNVRELENVIERAMLSASEIFHEHGVDEHYLARVLPELFEGQPQPRSRKEP  599

Query  579  TK-----EVENWERQR-ILQVLREVRGSKTKAAALLGISRTTLWRKIKD  621
            ++      + +  + R I + L   +GS   AA  LGISRTTLWR+++ 
Sbjct  600  SRTKDLHAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLRS  648

53) Anae109_3725 in NC_009675


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  318 bits (1194),  Expect = 4e-88, Method: Compositional matrix adjust.
 Identities = 277/632 (44%), Positives = 426/632 (68%), Gaps = 12/632 (1%)

Query  27   SRLRQVLESAAPIYADRAEVRVFDLSFEGALETAQSLTEADERVDAFVAAGSNGAYLRDH  86
            SRL  ++ + A+ Y+D  ++ V+D S   AL+TA+ L E   + D FV AG+ +AYLR H
Sbjct  22   SRLASLVAGLAAGYPD-VHIEVLDTSVSEALQTARDL-EQRGKADVFVCAGATAAYLRRH  79

Query  87   GPVPVALVDVSTTDALQALAHARTLgrrvgvvnfrrvLPGLERWKDLLRGVQIEQRAYVT  146
             + PV  + V+  D L+AL +AR  + +V+++++ R+  +L+  + L+  VQ++Q AY T
Sbjct  80   LARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLF-TVQVHQVAYTT  138

Query  147  PeearaavaelaaHGFEVVVGPGPACDEAERAGLKSVLLYSLECVCATIERAIEMAQVAR  206
             EEAR AV E++  G   ++G++   + AE+AGL +VL  S +    ++E A+ + +  R
Sbjct  139  LEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAMGVLDSQR  198

Query  207  AERGRREQLAGviahideavvavdaaeriavvNPGFERLLGARGVELVGKRLSSVAPELS  266
             E ++R +L +V+ HI  +V AVD    +  +NP++ +LL       +G+ L  + PEL 
Sbjct  199  LEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQQLCPELD  258

Query  267  LARVLETGAPELRSFQKLGGRSLVVSRIPVRQRGVLSGAVLTCQDSRTLLRVDRDLRSEL  326
            L + LE G+ E     +LG++++V + +P+ + G  +G VLTCQD  ++ R D+ +RS  
Sbjct  259  LQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRADQRIRSTR  318

Query  327  RPRRFIARYELAGIVGTSEAIRTVRTLAEQYAGTEGTVLITGESGTGKEMIAQGVHNAGR  386
            RP  F ARY L  + G+S A R +  LA ++A++++T+LITGESGTGKE++AQG+HN + 
Sbjct  319  RPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQGIHNESP  378

Query  387  RRDRPFVAINCAAFPEALLESELFGYEEGAFTGSRRGGRAGLFEAAHTGTIFLDEVGDVP  446
            RR+ PFVAINCAAFPE+LLESELFGYEEGAF+GSR+GG++GLFEAAH GT+FLDE+GD+P
Sbjct  379  RRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMP  438

Query  447  ItlqtrllrvlqerqvlrlGSNDPTPIDVRVVAATNRDLKREIARGAFREDLYYRLNILP  506
            ++LQTRLLRVLQER+VLRLG+ +P +IDVR++AAT++DL   +    FR DLYYRLNIL 
Sbjct  439  VSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLYYRLNILR  498

Query  507  IHLPPLRARRDDVAPIAEALLRDALARHGVpdalpralalllpwlQGYAWPGNVRELENV  566
            ++  PLR R +D++ I ++ + + L  +G P + +   +LLLP L   +WPGNVRELENV
Sbjct  499  LQTTPLRERPEDIPLICQG-ISQRLLVQGQPPGAAGITTLLLPYLVRHSWPGNVRELENV  557

Query  567  LERIAVLYSHRAPDQ-VGSEALRAVLPELFQVADEPRD-------GDLRSAREAQEAAVI  618
            +ER  +  S+   ++ V+ + L  VLPELF+   +PR         DL++   + +   I
Sbjct  558  IERAMLSASEIFHEHGVDEHYLARVLPELFEGQPQPRSRKEPSRTKDLHAIGKTAQLRYI  617

Query  619  RRVVEECGGNMKAAAKRLGVGRSTLYRKLRTA  650
            +  ++ C G++  AA+RLG++R+TL R+LR+A
Sbjct  618  QETLDSCQGSLDEAARRLGISRTTLWRRLRSA  649

54) Vapar_2771 in NC_012791


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  312 bits (1169),  Expect = 4e-86, Method: Compositional matrix adjust.
 Identities = 274/574 (48%), Positives = 391/574 (69%), Gaps = 10/574 (1%)

Query  38   GFAMPVVAEYTGRAEIEVVDGTFGDALAIARDRLERGLVDAFVSAGSNASILRAGLQAPV  97
            ++   + A Y +  +IEV+D + ++AL  ARD  +RG  D FV AG+ A+ LR  L  PV
Sbjct  26   SLVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRGKADVFVCAGATAAYLRRHLARPV  84

Query  98   GTIQLSGFDLLQALIKARRMSSRVGVVMYGQTIPELDEVKDLLNIEVVQHAYQTPDDARQ  157
             T++++G DLL+AL +AR  SS+V+++ Y +   +L+ ++ L+ ++V Q AY T ++ARQ
Sbjct  85   LTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFTVQVHQVAYTTLEEARQ  144

Query  158  RFEQLRREGFEVIVGSSLVVELAEQAGLHGLLAYSLGSVRKGFedalelarvarleagrY  217
               ++ R G   I+GSS VVELAEQAGLHG+L+ S ++ RK++E+A+ +    RLE ++ 
Sbjct  145  AVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAMGVLDSQRLEIAKR  204

Query  218  EQLNGVLHNLQEAVLAVNRDNRVIAVNPPMQQLLGPPHARLIGQSLEAIEPELSLQPTLD  277
             +L++VL+++  +V AV+ +  V ++NP++ QLL  P +  +G++L+ + PEL LQ +L+
Sbjct  205  RHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQQLCPELDLQQALE  264

Query  278  SGQVERAVVQRFAQRDWVVNRTPIREHGEIVGAALTLYDARTIQEADTSLRIQQGRRQSA  337
             G  E   V R++ +  V N  PI E+GE  G  LT  D  ++Q AD   RI+  RR +A
Sbjct  265  DGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRADQ--RIRSTRRPGA  322

Query  338  --ARHRFANLIGQSPAFLRAVQTARRFARTDLTVLIAGESGVGKELFAQSIHNESVRAGR  395
              AR R+ +L G S A    +Q A+RFA ++ T+LI+GESG GKEL+AQ+IHNES R   
Sbjct  323  FTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQGIHNESPRRHG  382

Query  396  PFVAVNCAAFPEALLESELFGYEEGAFTGSRRGGKRGLFEAAHTGTLFLDEIGDMPlqlq  455
            PFVA+NCAAFPE+LLESELFGYEEGAF+GSR+GGK GLFEAAH GTLFLDEIGDMP+ LQ
Sbjct  383  PFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMPVSLQ  442

Query  456  trllrvlqerEITRLGATAAIPVDVRVIAATHQPLNDMIAERRFRQDLFYRLNTlrlplp  515
            TRLLRVLQERE+ RLG+T +I++DVR+IAATH+ L   + +R FR DL+YRLN LRL   
Sbjct  443  TRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLYYRLNILRLQTT  502

Query  516  plrerreDIAPLAEAQVGRCLQRLGTrldpvralapllprlraYDWPGNIRELENLGERI  575
            PLRER EDI PL    +++ L   G   ++    + LLP L    WPGN+RELEN+ ER 
Sbjct  503  PLRERPEDI-PLICQGISQRLLVQGQPPGAAGITTLLLPYLVRHSWPGNVRELENVIERA  561

Query  576  AVFLMQF--DHLEDVRYDELRHDLPELFADTAAS  607
             +   ++  +H  D +Y  L + LPELF + + +
Sbjct  562  MLSASEIFHEHGVDEHY--LARVLPELFEGQPQP  593

55) prpR in NC_007650


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  304 bits (1138),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 241/557 (44%), Positives = 381/557 (69%), Gaps = 19/557 (3%)

Query  51   RPRVWAVGISRLRALFRDIADEYEERADLRIIARGYEEAI-TALATAGAERPDAIVAAGS  109
            RPR +    SRL +L  ++A  Y +  ++ ++  +  EA+ TA       ++D +V AG+
Sbjct  17   RPRQR----SRLASLVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRGKADVFVCAGA  71

Query  110  NGTYLKARVRVPVVLVNPTGFDVMHalararrdarriaLVSYGETPPEVRSFAAAYGLDV  169
             ++YL+ ++  PV+ +   G D+++AL +AR ++ ++AL+SY     ++++  + + ++V
Sbjct  72   TAAYLRRHLARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFTVQV  131

Query  170  VFASYQSAQEAETRVLEMRERGIETVVGPGLVTDLAANAGMGAVFVYSHASVRAAVNTAL  229
               +Y + +EA   VLE+   G  +++G++ V +LA +AG+ +V+  S+ + R A++ A+
Sbjct  132  HQVAYTTLEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAM  191

Query  230  EVAHATHAEALRRERLDNLLQHLRDGVVALDREGRVEAINERLALALGVSPSAAVGRALD  289
             V ++ + E  +R +LD +LQH+  GV A+D +G V+++N  LA  L ++ S+A+GR+L+
Sbjct  192  GVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQ  251

Query  290  DLTPEL---RTLRAADGDTLATVR-GVRYVVHRG-PLAASSGAPGSVLTFQESRAVERLD  344
            +L PEL   ++L  ++G+    +R G + VV    P+  ++   G VLT Q+  AV+R D
Sbjct  252  QLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRAD  311

Query  345  RTLRSHQHAQQFTARYRLDDIVGATPAIAHARDLARRYAKSDATVLILGESGTGKEMIAQ  404
            + +RS +++  FTARYRL+++ GA+ A  +  +LA+R+A S++T+LI GESGTGKE++AQ
Sbjct  312  QRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQ  371

Query  405  SLHALSARRKYPFVAVNCGAFPESLLESELFGYEEGAFTGARRGGKAGLFEAAHRGTLFL  464
            ++H  S+RR  PFVA+NC+AFPESLLESELFGYEEGAF+G+R+GGK+GLFEAAHRGTLFL
Sbjct  372  GIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFL  431

Query  465  DEIGEMPPslqsrllrvlqerevvrvGSTEPVPIDIRVVAATHRPLFAAVEAGAFRADLY  524
            DEIG+MP SLQ+RLLRVLQEREV+R+G+TEP++ID+R++AATH+ L AA+    FR+DLY
Sbjct  432  DEIGDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLY  491

Query  525  YRLNILNIGLPPLRERAADIPalaatllaqaarreprlaerlrdahdaaraldaanaalI  584
            YRLNIL +   PLRER+ DIP           +  ++      ++ +AA       + L+
Sbjct  492  YRLNILRLQTTPLRERPEDIP--------LICQGISQRLLVQGQPPGAAGITTLLLPYLV  543

Query  585  RYRWPGNVRELQNVIER  601
            R  WPGNVREL+NVIER
Sbjct  544  RHSWPGNVRELENVIER  560


 Score = 29.8 bits (93),  Expect = 0.50, Method: Compositional matrix adjust.
 Identities = 14/26 (54%), Positives = 18/26 (70%), Gaps = 0/26 (0%)

Query  682  CGGDRDRACAMLGISKTTLWRKLAAS  707
            C G  D A   LGIS+TTLWR+L ++
Sbjct  624  CQGSLDEAARRLGISRTTLWRRLRSA  649

56) prpR in NC_006349


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  304 bits (1138),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 242/587 (42%), Positives = 391/587 (67%), Gaps = 21/587 (3%)

Query  10   RPRVWAVGISRLRALFRDIADEYEERADLRIVARGYEEAI-TALATAGAERPDAIVAAGS  68
            RPR +    SRL +L  ++A  Y +  ++ ++  +  EA+ TA       ++D +V AG+
Sbjct  17   RPRQR----SRLASLVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRGKADVFVCAGA  71

Query  69   NGTYLKARVRVPVVLVNPTGFDVMHALARARRDAGRIALVSYGETPPEVRSFAAAYGLDV  128
             ++YL+ ++  PV+ +   G D+++AL +AR +++++AL+SY     ++++  + + ++V
Sbjct  72   TAAYLRRHLARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFTVQV  131

Query  129  VFASYQSAQEADTRVLEMRERGIETVVGPGLVTDLAANAGMGAVFVYSHASVRAAVNTAL  188
               +Y + +EA   VLE+   G  +++G++ V +LA +AG+ +V+  S+ + R A++ A+
Sbjct  132  HQVAYTTLEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAM  191

Query  189  EVAHATHAEALRRERLDNLLQHLRDGVVALDREGRIEAINERLALALGVSPSAAVGRALD  248
             V ++ + E  +R +LD +LQH+  GV A+D +G ++++N  LA  L ++ S+A+GR+L+
Sbjct  192  GVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQ  251

Query  249  DLTPEL---RTLRAADGDTLATVR-GVRYVVHRgplaasggapgs-VLTFQESRAVERLD  303
            +L PEL   ++L  ++G+    +R G + VV         G   + VLT Q+  AV+R D
Sbjct  252  QLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRAD  311

Query  304  RTLRSHQHAQQFTARYRLDDIVGTTPAIAYARDLARRYAKSDATVLILGESGTGKEMIAQ  363
            + +RS +++  FTARYRL+++ G++ A     +LA+R+A S++T+LI GESGTGKE++AQ
Sbjct  312  QRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQ  371

Query  364  SLHALSARRKYPFVAVNCGAFPESLLESELFGYEEGAFTGARRGGKAGLFEAAHRGTLFL  423
            ++H  S+RR  PFVA+NC+AFPESLLESELFGYEEGAF+G+R+GGK+GLFEAAHRGTLFL
Sbjct  372  GIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFL  431

Query  424  DEIGEMPPslqsrllrvlqerevvrvGSTEPVPVDIRVVAATHRPLFAAVEAGTFRADLY  483
            DEIG+MP SLQ+RLLRVLQEREV+R+G+TEP+++D+R++AATH+ L AA+    FR+DLY
Sbjct  432  DEIGDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLY  491

Query  484  YRLNILNIGLPPLRERAADIPalaatllaqaarreprlaerlrdandaaraldaanaala  543
            YRLNIL +   PLRER+ DIP           +  ++      ++ +AA       + L 
Sbjct  492  YRLNILRLQTTPLRERPEDIP--------LICQGISQRLLVQGQPPGAAGITTLLLPYLV  543

Query  544  rYRWPGNVRELQNVIERIAVELADAGERGDAAVSADTLRAIAPEVFA  590
            R  WPGNVREL+NVIER  +  ++  +  + +V  + L  + PE+F 
Sbjct  544  RHSWPGNVRELENVIERAMLSASEIFH--EHGVDEHYLARVLPELFE  588


 Score = 32.4 bits (103),  Expect = 0.076, Method: Compositional matrix adjust.
 Identities = 15/26 (58%), Positives = 19/26 (74%), Gaps = 0/26 (0%)

Query  646  CGGDRDRACARLGISKTTLWRKLAAS  671
            C G  D A  RLGIS+TTLWR+L ++
Sbjct  624  CQGSLDEAARRLGISRTTLWRRLRSA  649

57) prpR in NC_008835


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  304 bits (1138),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 244/587 (42%), Positives = 390/587 (67%), Gaps = 21/587 (3%)

Query  2    RPRVWAVGISRLRALFRDIADEYEERADLRIVARGYEEAI-TALATAGAERPDAIVAAGS  60
            RPR +    SRL +L  ++A  Y +  ++ ++  +  EA+ TA       ++D +V AG+
Sbjct  17   RPRQR----SRLASLVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRGKADVFVCAGA  71

Query  61   NGTYLKARVRVPVVLVNPTGFDVMHALARARRDAGRIALVSYGETPPEVRSFAAAYGLDV  120
             ++YL+ ++  PV+ +   G D+++AL +AR +++++AL+SY     ++++  + + ++V
Sbjct  72   TAAYLRRHLARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFTVQV  131

Query  121  VFASYQSAQEADTRVLEMRERGIETVVGPGLVTDLAANAGMGAVFVYSHASVRAAVNTAL  180
               +Y + +EA   VLE+   G  +++G++ V +LA +AG+ +V+  S+ + R A++ A+
Sbjct  132  HQVAYTTLEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAM  191

Query  181  EVAHATHAEALRRERLDNLLQHLRDGVVALDREGRIEAINERLALALGVSPSAAVGRALD  240
             V ++ + E  +R +LD +LQH+  GV A+D +G ++++N  LA  L ++ S+A+GR+L+
Sbjct  192  GVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQ  251

Query  241  DLTPEL---RTLRAADGDTLATVR-GVRYVVHRgplaasgga-pgsVLTFQESRAVERLD  295
            +L PEL   ++L  ++G+    +R G + VV         G   G VLT Q+  AV+R D
Sbjct  252  QLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRAD  311

Query  296  RTLRSHQHAQQFTARYRLDDIVGTTPAIAYARDLARRYAKSDATVLILGESGTGKEMIAQ  355
            + +RS +++  FTARYRL+++ G++ A     +LA+R+A S++T+LI GESGTGKE++AQ
Sbjct  312  QRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQ  371

Query  356  SLHALSARRKYPFVAVNCGAFPESLLESELFGYEEGAFTGARRGGKAGLFEAAHRGTLFL  415
            ++H  S+RR  PFVA+NC+AFPESLLESELFGYEEGAF+G+R+GGK+GLFEAAHRGTLFL
Sbjct  372  GIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFL  431

Query  416  DEIGEMPPslqsrllrvlqerevvrvGSTEPVPVDIRVVAATHRPLFAAVEAGTFRADLY  475
            DEIG+MP SLQ+RLLRVLQEREV+R+G+TEP+++D+R++AATH+ L AA+    FR+DLY
Sbjct  432  DEIGDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLY  491

Query  476  YRLNILNIGLPPLRERAADIPalaatllaqaarreprlaerlrdandaaraldaanaala  535
            YRLNIL +   PLRER+ DIP           +  ++      ++ +AA       + L 
Sbjct  492  YRLNILRLQTTPLRERPEDIP--------LICQGISQRLLVQGQPPGAAGITTLLLPYLV  543

Query  536  rYRWPGNVRELQNVIERIAVELADAGERGDAAVSADTLRAIAPEVFA  582
            R  WPGNVREL+NVIER    L+ +    + +V  + L  + PE+F 
Sbjct  544  RHSWPGNVRELENVIERAM--LSASEIFHEHGVDEHYLARVLPELFE  588


 Score = 32.4 bits (103),  Expect = 0.076, Method: Compositional matrix adjust.
 Identities = 15/26 (58%), Positives = 19/26 (74%), Gaps = 0/26 (0%)

Query  638  CGGDRDRACARLGISKTTLWRKLAAS  663
            C G  D A  RLGIS+TTLWR+L ++
Sbjct  624  CQGSLDEAARRLGISRTTLWRRLRSA  649

58) prpR in NC_008784


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  304 bits (1138),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 242/587 (42%), Positives = 391/587 (67%), Gaps = 21/587 (3%)

Query  10   RPRVWAVGISRLRALFRDIADEYEERADLRIVARGYEEAI-TALATAGAERPDAIVAAGS  68
            RPR +    SRL +L  ++A  Y +  ++ ++  +  EA+ TA       ++D +V AG+
Sbjct  17   RPRQR----SRLASLVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRGKADVFVCAGA  71

Query  69   NGTYLKARVRVPVVLVNPTGFDVMHALARARRDAGRIALVSYGETPPEVRSFAAAYGLDV  128
             ++YL+ ++  PV+ +   G D+++AL +AR +++++AL+SY     ++++  + + ++V
Sbjct  72   TAAYLRRHLARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFTVQV  131

Query  129  VFASYQSAQEADTRVLEMRERGIETVVGPGLVTDLAANAGMGAVFVYSHASVRAAVNTAL  188
               +Y + +EA   VLE+   G  +++G++ V +LA +AG+ +V+  S+ + R A++ A+
Sbjct  132  HQVAYTTLEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAM  191

Query  189  EVAHATHAEALRRERLDNLLQHLRDGVVALDREGRIEAINERLALALGVSPSAAVGRALD  248
             V ++ + E  +R +LD +LQH+  GV A+D +G ++++N  LA  L ++ S+A+GR+L+
Sbjct  192  GVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQ  251

Query  249  DLTPEL---RTLRAADGDTLATVR-GVRYVVHRgplaasggapgs-VLTFQESRAVERLD  303
            +L PEL   ++L  ++G+    +R G + VV         G   + VLT Q+  AV+R D
Sbjct  252  QLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRAD  311

Query  304  RTLRSHQHAQQFTARYRLDDIVGTTPAIAYARDLARRYAKSDATVLILGESGTGKEMIAQ  363
            + +RS +++  FTARYRL+++ G++ A     +LA+R+A S++T+LI GESGTGKE++AQ
Sbjct  312  QRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQ  371

Query  364  SLHALSARRKYPFVAVNCGAFPESLLESELFGYEEGAFTGARRGGKAGLFEAAHRGTLFL  423
            ++H  S+RR  PFVA+NC+AFPESLLESELFGYEEGAF+G+R+GGK+GLFEAAHRGTLFL
Sbjct  372  GIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFL  431

Query  424  DEIGEMPPslqsrllrvlqerevvrvGSTEPVPVDIRVVAATHRPLFAAVEAGTFRADLY  483
            DEIG+MP SLQ+RLLRVLQEREV+R+G+TEP+++D+R++AATH+ L AA+    FR+DLY
Sbjct  432  DEIGDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLY  491

Query  484  YRLNILNIGLPPLRERAADIPalaatllaqaarreprlaerlrdandaaraldaanaala  543
            YRLNIL +   PLRER+ DIP           +  ++      ++ +AA       + L 
Sbjct  492  YRLNILRLQTTPLRERPEDIP--------LICQGISQRLLVQGQPPGAAGITTLLLPYLV  543

Query  544  rYRWPGNVRELQNVIERIAVELADAGERGDAAVSADTLRAIAPEVFA  590
            R  WPGNVREL+NVIER  +  ++  +  + +V  + L  + PE+F 
Sbjct  544  RHSWPGNVRELENVIERAMLSASEIFH--EHGVDEHYLARVLPELFE  588


 Score = 32.4 bits (103),  Expect = 0.076, Method: Compositional matrix adjust.
 Identities = 15/26 (58%), Positives = 19/26 (74%), Gaps = 0/26 (0%)

Query  646  CGGDRDRACARLGISKTTLWRKLAAS  671
            C G  D A  RLGIS+TTLWR+L ++
Sbjct  624  CQGSLDEAARRLGISRTTLWRRLRSA  649

59) prpR in NC_017832


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  304 bits (1138),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 242/587 (42%), Positives = 391/587 (67%), Gaps = 21/587 (3%)

Query  10   RPRVWAVGISRLRALFRDIADEYEERADLRIVARGYEEAI-TALATAGAERPDAIVAAGS  68
            RPR +    SRL +L  ++A  Y +  ++ ++  +  EA+ TA       ++D +V AG+
Sbjct  17   RPRQR----SRLASLVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRGKADVFVCAGA  71

Query  69   NGTYLKARVRVPVVLVNPTGFDVMHALARARRDAGRIALVSYGETPPEVRSFAAAYGLDV  128
             ++YL+ ++  PV+ +   G D+++AL +AR +++++AL+SY     ++++  + + ++V
Sbjct  72   TAAYLRRHLARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFTVQV  131

Query  129  VFASYQSAQEADTRVLEMRERGIETVVGPGLVTDLAANAGMGAVFVYSHASVRAAVNTAL  188
               +Y + +EA   VLE+   G  +++G++ V +LA +AG+ +V+  S+ + R A++ A+
Sbjct  132  HQVAYTTLEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAM  191

Query  189  EVAHATHAEALRRERLDNLLQHLRDGVVALDREGRIEAINERLALALGVSPSAAVGRALD  248
             V ++ + E  +R +LD +LQH+  GV A+D +G ++++N  LA  L ++ S+A+GR+L+
Sbjct  192  GVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQ  251

Query  249  DLTPEL---RTLRAADGDTLATVR-GVRYVVHRgplassggapgs-VLTFQESRAVERLD  303
            +L PEL   ++L  ++G+    +R G + VV         G   + VLT Q+  AV+R D
Sbjct  252  QLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRAD  311

Query  304  RTLRSHQHAQQFTARYRLDDIVGTTPAIAYARDLARRYAKSDATVLILGESGTGKEMIAQ  363
            + +RS +++  FTARYRL+++ G++ A     +LA+R+A S++T+LI GESGTGKE++AQ
Sbjct  312  QRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQ  371

Query  364  SLHALSARRKYPFVAVNCGAFPESLLESELFGYEEGAFTGARRGGKAGLFEAAHRGTLFL  423
            ++H  S+RR  PFVA+NC+AFPESLLESELFGYEEGAF+G+R+GGK+GLFEAAHRGTLFL
Sbjct  372  GIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFL  431

Query  424  DEIGEMPPslqsrllrvlqerevvrvGSTEPVPVDIRVVAATHRPLFAAVEAGTFRADLY  483
            DEIG+MP SLQ+RLLRVLQEREV+R+G+TEP+++D+R++AATH+ L AA+    FR+DLY
Sbjct  432  DEIGDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLY  491

Query  484  YRLNILNIGLPPLRERAADIPalaatllaqaarreprlaerlrdandaaraldaanaala  543
            YRLNIL +   PLRER+ DIP           +  ++      ++ +AA       + L 
Sbjct  492  YRLNILRLQTTPLRERPEDIP--------LICQGISQRLLVQGQPPGAAGITTLLLPYLV  543

Query  544  rYRWPGNVRELQNVIERIAVELADAGERGDAAVSADTLRAIAPEVFA  590
            R  WPGNVREL+NVIER  +  ++  +  + +V  + L  + PE+F 
Sbjct  544  RHSWPGNVRELENVIERAMLSASEIFH--EHGVDEHYLARVLPELFE  588


 Score = 32.4 bits (103),  Expect = 0.077, Method: Compositional matrix adjust.
 Identities = 15/26 (58%), Positives = 19/26 (74%), Gaps = 0/26 (0%)

Query  652  CGGDRDRACARLGISKTTLWRKLAAS  677
            C G  D A  RLGIS+TTLWR+L ++
Sbjct  624  CQGSLDEAARRLGISRTTLWRRLRSA  649

60) prpR in NC_009078


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  304 bits (1138),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 242/587 (42%), Positives = 391/587 (67%), Gaps = 21/587 (3%)

Query  10   RPRVWAVGISRLRALFRDIADEYEERADLRIVARGYEEAI-TALATAGAERPDAIVAAGS  68
            RPR +    SRL +L  ++A  Y +  ++ ++  +  EA+ TA       ++D +V AG+
Sbjct  17   RPRQR----SRLASLVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRGKADVFVCAGA  71

Query  69   NGTYLKARVRVPVVLVNPTGFDVMHALARARRDAGRIALVSYGETPPEVRSFAAAYGLDV  128
             ++YL+ ++  PV+ +   G D+++AL +AR +++++AL+SY     ++++  + + ++V
Sbjct  72   TAAYLRRHLARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFTVQV  131

Query  129  VFASYQSAQEADTRVLEMRERGIETVVGPGLVTDLAANAGMGAVFVYSHASVRAAVNTAL  188
               +Y + +EA   VLE+   G  +++G++ V +LA +AG+ +V+  S+ + R A++ A+
Sbjct  132  HQVAYTTLEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAM  191

Query  189  EVAHATHAEALRRERLDNLLQHLRDGVVALDREGRIEAINERLALALGVSPSAAVGRALD  248
             V ++ + E  +R +LD +LQH+  GV A+D +G ++++N  LA  L ++ S+A+GR+L+
Sbjct  192  GVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQ  251

Query  249  DLTPEL---RTLRAADGDTLATVR-GVRYVVHRgplassggapgs-VLTFQESRAVERLD  303
            +L PEL   ++L  ++G+    +R G + VV         G   + VLT Q+  AV+R D
Sbjct  252  QLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRAD  311

Query  304  RTLRSHQHAQQFTARYRLDDIVGTTPAIAYARDLARRYAKSDATVLILGESGTGKEMIAQ  363
            + +RS +++  FTARYRL+++ G++ A     +LA+R+A S++T+LI GESGTGKE++AQ
Sbjct  312  QRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQ  371

Query  364  SLHALSARRKYPFVAVNCGAFPESLLESELFGYEEGAFTGARRGGKAGLFEAAHRGTLFL  423
            ++H  S+RR  PFVA+NC+AFPESLLESELFGYEEGAF+G+R+GGK+GLFEAAHRGTLFL
Sbjct  372  GIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFL  431

Query  424  DEIGEMPPslqsrllrvlqerevvrvGSTEPVPVDIRVVAATHRPLFAAVEAGTFRADLY  483
            DEIG+MP SLQ+RLLRVLQEREV+R+G+TEP+++D+R++AATH+ L AA+    FR+DLY
Sbjct  432  DEIGDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLY  491

Query  484  YRLNILNIGLPPLRERAADIPalaatllaqaarreprlaerlrdandaaraldaanaala  543
            YRLNIL +   PLRER+ DIP           +  ++      ++ +AA       + L 
Sbjct  492  YRLNILRLQTTPLRERPEDIP--------LICQGISQRLLVQGQPPGAAGITTLLLPYLV  543

Query  544  rYRWPGNVRELQNVIERIAVELADAGERGDAAVSADTLRAIAPEVFA  590
            R  WPGNVREL+NVIER  +  ++  +  + +V  + L  + PE+F 
Sbjct  544  RHSWPGNVRELENVIERAMLSASEIFH--EHGVDEHYLARVLPELFE  588


 Score = 32.4 bits (103),  Expect = 0.076, Method: Compositional matrix adjust.
 Identities = 15/26 (58%), Positives = 19/26 (74%), Gaps = 0/26 (0%)

Query  646  CGGDRDRACARLGISKTTLWRKLAAS  671
            C G  D A  RLGIS+TTLWR+L ++
Sbjct  624  CQGSLDEAARRLGISRTTLWRRLRSA  649

61) prpR in NC_007435


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  304 bits (1138),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 242/587 (42%), Positives = 391/587 (67%), Gaps = 21/587 (3%)

Query  10   RPRVWAVGISRLRALFRDIADEYEERADLRIVARGYEEAI-TALATAGAERPDAIVAAGS  68
            RPR +    SRL +L  ++A  Y +  ++ ++  +  EA+ TA       ++D +V AG+
Sbjct  17   RPRQR----SRLASLVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRGKADVFVCAGA  71

Query  69   NGTYLKARVRVPVVLVNPTGFDVMHALARARRDAGRIALVSYGETPPEVRSFAAAYGLDV  128
             ++YL+ ++  PV+ +   G D+++AL +AR +++++AL+SY     ++++  + + ++V
Sbjct  72   TAAYLRRHLARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFTVQV  131

Query  129  VFASYQSAQEADTRVLEMRERGIETVVGPGLVTDLAANAGMGAVFVYSHASVRAAVNTAL  188
               +Y + +EA   VLE+   G  +++G++ V +LA +AG+ +V+  S+ + R A++ A+
Sbjct  132  HQVAYTTLEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAM  191

Query  189  EVAHATHAEALRRERLDNLLQHLRDGVVALDREGRIEAINERLALALGVSPSAAVGRALD  248
             V ++ + E  +R +LD +LQH+  GV A+D +G ++++N  LA  L ++ S+A+GR+L+
Sbjct  192  GVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQ  251

Query  249  DLTPEL---RTLRAADGDTLATVR-GVRYVVHRgplassggapgs-VLTFQESRAVERLD  303
            +L PEL   ++L  ++G+    +R G + VV         G   + VLT Q+  AV+R D
Sbjct  252  QLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRAD  311

Query  304  RTLRSHQHAQQFTARYRLDDIVGTTPAIAYARDLARRYAKSDATVLILGESGTGKEMIAQ  363
            + +RS +++  FTARYRL+++ G++ A     +LA+R+A S++T+LI GESGTGKE++AQ
Sbjct  312  QRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQ  371

Query  364  SLHALSARRKYPFVAVNCGAFPESLLESELFGYEEGAFTGARRGGKAGLFEAAHRGTLFL  423
            ++H  S+RR  PFVA+NC+AFPESLLESELFGYEEGAF+G+R+GGK+GLFEAAHRGTLFL
Sbjct  372  GIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFL  431

Query  424  DEIGEMPPslqsrllrvlqerevvrvGSTEPVPVDIRVVAATHRPLFAAVEAGTFRADLY  483
            DEIG+MP SLQ+RLLRVLQEREV+R+G+TEP+++D+R++AATH+ L AA+    FR+DLY
Sbjct  432  DEIGDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLY  491

Query  484  YRLNILNIGLPPLRERAADIPalaatllaqaarreprlaerlrdandaaraldaanaala  543
            YRLNIL +   PLRER+ DIP           +  ++      ++ +AA       + L 
Sbjct  492  YRLNILRLQTTPLRERPEDIP--------LICQGISQRLLVQGQPPGAAGITTLLLPYLV  543

Query  544  rYRWPGNVRELQNVIERIAVELADAGERGDAAVSADTLRAIAPEVFA  590
            R  WPGNVREL+NVIER  +  ++  +  + +V  + L  + PE+F 
Sbjct  544  RHSWPGNVRELENVIERAMLSASEIFH--EHGVDEHYLARVLPELFE  588


 Score = 32.4 bits (103),  Expect = 0.077, Method: Compositional matrix adjust.
 Identities = 15/26 (58%), Positives = 19/26 (74%), Gaps = 0/26 (0%)

Query  649  CGGDRDRACARLGISKTTLWRKLAAS  674
            C G  D A  RLGIS+TTLWR+L ++
Sbjct  624  CQGSLDEAARRLGISRTTLWRRLRSA  649

62) prpR in NC_009075


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  304 bits (1138),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 242/587 (42%), Positives = 391/587 (67%), Gaps = 21/587 (3%)

Query  10   RPRVWAVGISRLRALFRDIADEYEERADLRIVARGYEEAI-TALATAGAERPDAIVAAGS  68
            RPR +    SRL +L  ++A  Y +  ++ ++  +  EA+ TA       ++D +V AG+
Sbjct  17   RPRQR----SRLASLVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRGKADVFVCAGA  71

Query  69   NGTYLKARVRVPVVLVNPTGFDVMHALARARRDAGRIALVSYGETPPEVRSFAAAYGLDV  128
             ++YL+ ++  PV+ +   G D+++AL +AR +++++AL+SY     ++++  + + ++V
Sbjct  72   TAAYLRRHLARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFTVQV  131

Query  129  VFASYQSAQEADTRVLEMRERGIETVVGPGLVTDLAANAGMGAVFVYSHASVRAAVNTAL  188
               +Y + +EA   VLE+   G  +++G++ V +LA +AG+ +V+  S+ + R A++ A+
Sbjct  132  HQVAYTTLEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAM  191

Query  189  EVAHATHAEALRRERLDNLLQHLRDGVVALDREGRIEAINERLALALGVSPSAAVGRALD  248
             V ++ + E  +R +LD +LQH+  GV A+D +G ++++N  LA  L ++ S+A+GR+L+
Sbjct  192  GVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQ  251

Query  249  DLTPEL---RTLRAADGDTLATVR-GVRYVVHRgplassggapgs-VLTFQESRAVERLD  303
            +L PEL   ++L  ++G+    +R G + VV         G   + VLT Q+  AV+R D
Sbjct  252  QLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRAD  311

Query  304  RTLRSHQHAQQFTARYRLDDIVGTTPAIAYARDLARRYAKSDATVLILGESGTGKEMIAQ  363
            + +RS +++  FTARYRL+++ G++ A     +LA+R+A S++T+LI GESGTGKE++AQ
Sbjct  312  QRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQ  371

Query  364  SLHALSARRKYPFVAVNCGAFPESLLESELFGYEEGAFTGARRGGKAGLFEAAHRGTLFL  423
            ++H  S+RR  PFVA+NC+AFPESLLESELFGYEEGAF+G+R+GGK+GLFEAAHRGTLFL
Sbjct  372  GIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFL  431

Query  424  DEIGEMPPslqsrllrvlqerevvrvGSTEPVPVDIRVVAATHRPLFAAVEAGTFRADLY  483
            DEIG+MP SLQ+RLLRVLQEREV+R+G+TEP+++D+R++AATH+ L AA+    FR+DLY
Sbjct  432  DEIGDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLY  491

Query  484  YRLNILNIGLPPLRERAADIPalaatllaqaarreprlaerlrdandaaraldaanaala  543
            YRLNIL +   PLRER+ DIP           +  ++      ++ +AA       + L 
Sbjct  492  YRLNILRLQTTPLRERPEDIP--------LICQGISQRLLVQGQPPGAAGITTLLLPYLV  543

Query  544  rYRWPGNVRELQNVIERIAVELADAGERGDAAVSADTLRAIAPEVFA  590
            R  WPGNVREL+NVIER  +  ++  +  + +V  + L  + PE+F 
Sbjct  544  RHSWPGNVRELENVIERAMLSASEIFH--EHGVDEHYLARVLPELFE  588


 Score = 32.4 bits (103),  Expect = 0.077, Method: Compositional matrix adjust.
 Identities = 15/26 (58%), Positives = 19/26 (74%), Gaps = 0/26 (0%)

Query  652  CGGDRDRACARLGISKTTLWRKLAAS  677
            C G  D A  RLGIS+TTLWR+L ++
Sbjct  624  CQGSLDEAARRLGISRTTLWRRLRSA  649

63) BPC006_II0273 in NC_018529


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  304 bits (1138),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 244/587 (42%), Positives = 390/587 (67%), Gaps = 21/587 (3%)

Query  2    RPRVWAVGISRLRALFRDIADEYEERADLRIVARGYEEAI-TALATAGAERPDAIVAAGS  60
            RPR +    SRL +L  ++A  Y +  ++ ++  +  EA+ TA       ++D +V AG+
Sbjct  17   RPRQR----SRLASLVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRGKADVFVCAGA  71

Query  61   NGTYLKARVRVPVVLVNPTGFDVMHALARARRDAGRIALVSYGETPPEVRSFAAAYGLDV  120
             ++YL+ ++  PV+ +   G D+++AL +AR +++++AL+SY     ++++  + + ++V
Sbjct  72   TAAYLRRHLARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFTVQV  131

Query  121  VFASYQSAQEADTRVLEMRERGIETVVGPGLVTDLAANAGMGAVFVYSHASVRAAVNTAL  180
               +Y + +EA   VLE+   G  +++G++ V +LA +AG+ +V+  S+ + R A++ A+
Sbjct  132  HQVAYTTLEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAM  191

Query  181  EVAHATHAEALRRERLDNLLQHLRDGVVALDREGRIEAINERLALALGVSPSAAVGRALD  240
             V ++ + E  +R +LD +LQH+  GV A+D +G ++++N  LA  L ++ S+A+GR+L+
Sbjct  192  GVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQ  251

Query  241  DLTPEL---RTLRAADGDTLATVR-GVRYVVHRgplassgga-pgsVLTFQESRAVERLD  295
            +L PEL   ++L  ++G+    +R G + VV         G   G VLT Q+  AV+R D
Sbjct  252  QLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRAD  311

Query  296  RTLRSHQHAQQFTARYRLDDIVGTTPAIAYARDLARRYAKSDATVLILGESGTGKEMIAQ  355
            + +RS +++  FTARYRL+++ G++ A     +LA+R+A S++T+LI GESGTGKE++AQ
Sbjct  312  QRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQ  371

Query  356  SLHALSARRKYPFVAVNCGAFPESLLESELFGYEEGAFTGARRGGKAGLFEAAHRGTLFL  415
            ++H  S+RR  PFVA+NC+AFPESLLESELFGYEEGAF+G+R+GGK+GLFEAAHRGTLFL
Sbjct  372  GIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFL  431

Query  416  DEIGEMPPslqsrllrvlqerevvrvGSTEPVPVDIRVVAATHRPLFAAVEAGTFRADLY  475
            DEIG+MP SLQ+RLLRVLQEREV+R+G+TEP+++D+R++AATH+ L AA+    FR+DLY
Sbjct  432  DEIGDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLY  491

Query  476  YRLNILNIGLPPLRERAADIPalaatllaqaarreprlaerlrdandaaraldaanaala  535
            YRLNIL +   PLRER+ DIP           +  ++      ++ +AA       + L 
Sbjct  492  YRLNILRLQTTPLRERPEDIP--------LICQGISQRLLVQGQPPGAAGITTLLLPYLV  543

Query  536  rYRWPGNVRELQNVIERIAVELADAGERGDAAVSADTLRAIAPEVFA  582
            R  WPGNVREL+NVIER    L+ +    + +V  + L  + PE+F 
Sbjct  544  RHSWPGNVRELENVIERAM--LSASEIFHEHGVDEHYLARVLPELFE  588


 Score = 32.4 bits (103),  Expect = 0.076, Method: Compositional matrix adjust.
 Identities = 15/26 (58%), Positives = 19/26 (74%), Gaps = 0/26 (0%)

Query  638  CGGDRDRACARLGISKTTLWRKLAAS  663
            C G  D A  RLGIS+TTLWR+L ++
Sbjct  624  CQGSLDEAARRLGISRTTLWRRLRSA  649

64) prpR in NC_006351


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  304 bits (1138),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 242/587 (42%), Positives = 391/587 (67%), Gaps = 21/587 (3%)

Query  10   RPRVWAVGISRLRALFRDIADEYEERADLRIVARGYEEAI-TALATAGAERPDAIVAAGS  68
            RPR +    SRL +L  ++A  Y +  ++ ++  +  EA+ TA       ++D +V AG+
Sbjct  17   RPRQR----SRLASLVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRGKADVFVCAGA  71

Query  69   NGTYLKARVRVPVVLVNPTGFDVMHALARARRDAGRIALVSYGETPPEVRSFAAAYGLDV  128
             ++YL+ ++  PV+ +   G D+++AL +AR +++++AL+SY     ++++  + + ++V
Sbjct  72   TAAYLRRHLARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFTVQV  131

Query  129  VFASYQSAQEADTRVLEMRERGIETVVGPGLVTDLAANAGMGAVFVYSHASVRAAVNTAL  188
               +Y + +EA   VLE+   G  +++G++ V +LA +AG+ +V+  S+ + R A++ A+
Sbjct  132  HQVAYTTLEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAM  191

Query  189  EVAHATHAEALRRERLDNLLQHLRDGVVALDREGRIEAINERLALALGVSPSAAVGRALD  248
             V ++ + E  +R +LD +LQH+  GV A+D +G ++++N  LA  L ++ S+A+GR+L+
Sbjct  192  GVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQ  251

Query  249  DLTPEL---RTLRAADGDTLATVR-GVRYVVHRgplassggapgs-VLTFQESRAVERLD  303
            +L PEL   ++L  ++G+    +R G + VV         G   + VLT Q+  AV+R D
Sbjct  252  QLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRAD  311

Query  304  RTLRSHQHAQQFTARYRLDDIVGTTPAIAYARDLARRYAKSDATVLILGESGTGKEMIAQ  363
            + +RS +++  FTARYRL+++ G++ A     +LA+R+A S++T+LI GESGTGKE++AQ
Sbjct  312  QRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQ  371

Query  364  SLHALSARRKYPFVAVNCGAFPESLLESELFGYEEGAFTGARRGGKAGLFEAAHRGTLFL  423
            ++H  S+RR  PFVA+NC+AFPESLLESELFGYEEGAF+G+R+GGK+GLFEAAHRGTLFL
Sbjct  372  GIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFL  431

Query  424  DEIGEMPPslqsrllrvlqerevvrvGSTEPVPVDIRVVAATHRPLFAAVEAGTFRADLY  483
            DEIG+MP SLQ+RLLRVLQEREV+R+G+TEP+++D+R++AATH+ L AA+    FR+DLY
Sbjct  432  DEIGDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLY  491

Query  484  YRLNILNIGLPPLRERAADIPalaatllaqaarreprlaerlrdandaaraldaanaala  543
            YRLNIL +   PLRER+ DIP           +  ++      ++ +AA       + L 
Sbjct  492  YRLNILRLQTTPLRERPEDIP--------LICQGISQRLLVQGQPPGAAGITTLLLPYLV  543

Query  544  rYRWPGNVRELQNVIERIAVELADAGERGDAAVSADTLRAIAPEVFA  590
            R  WPGNVREL+NVIER  +  ++  +  + +V  + L  + PE+F 
Sbjct  544  RHSWPGNVRELENVIERAMLSASEIFH--EHGVDEHYLARVLPELFE  588


 Score = 32.4 bits (103),  Expect = 0.076, Method: Compositional matrix adjust.
 Identities = 15/26 (58%), Positives = 19/26 (74%), Gaps = 0/26 (0%)

Query  646  CGGDRDRACARLGISKTTLWRKLAAS  671
            C G  D A  RLGIS+TTLWR+L ++
Sbjct  624  CQGSLDEAARRLGISRTTLWRRLRSA  649

65) prpR in NC_021877


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  304 bits (1138),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 242/587 (42%), Positives = 392/587 (67%), Gaps = 21/587 (3%)

Query  10   RPRVWAVGISRLRALFRDIADEYEERADLRIVARGYEEAI-TALATAGAERPDAIVAAGS  68
            RPR +    SRL +L  ++A  Y +  ++ ++  +  EA+ TA       ++D +V AG+
Sbjct  17   RPRQR----SRLASLVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRGKADVFVCAGA  71

Query  69   NGTYLKARVRVPVVLVNPTGFDVMHALARARRDAGRIALVSYGETPPEVRSFAAAYGLDV  128
             ++YL+ ++  PV+ +   G D+++AL +AR +++++AL+SY     ++++  + + ++V
Sbjct  72   TAAYLRRHLARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFTVQV  131

Query  129  VFASYQSAQEADTRVLEMRERGIETVVGPGLVTDLAANAGMGAVFVYSHASVRAAVNTAL  188
               +Y + +EA   VLE+   G  +++G++ V +LA +AG+ +V+  S+ + R A++ A+
Sbjct  132  HQVAYTTLEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAM  191

Query  189  EVAHATHAEALRRERLDNLLQHLRDGVVALDREGRIEAINERLALALGVSPSAAVGRALD  248
             V ++ + E  +R +LD +LQH+  GV A+D +G ++++N  LA  L ++ S+A+GR+L+
Sbjct  192  GVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQ  251

Query  249  DLTPEL---RTLRAADGDTLATVR-GVRYVVHRgplassggapgs-VLTFQESRAVERLD  303
            +L PEL   ++L  ++G+    +R G + VV         G   + VLT Q+  AV+R D
Sbjct  252  QLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRAD  311

Query  304  RTLRSHQHAQQFTARYRLDDIVGTTPAIAYARDLARRYAKSDATVLILGESGTGKEMIAQ  363
            + +RS +++  FTARYRL+++ G++ A     +LA+R+A S++T+LI GESGTGKE++AQ
Sbjct  312  QRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQ  371

Query  364  SLHALSARRKYPFVAVNCGAFPESLLESELFGYEEGAFTGARRGGKAGLFEAAHRGTLFL  423
            ++H  S+RR  PFVA+NC+AFPESLLESELFGYEEGAF+G+R+GGK+GLFEAAHRGTLFL
Sbjct  372  GIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFL  431

Query  424  DEIGEMPPslqsrllrvlqerevvrvGSTEPVPVDIRVVAATHRPLFAAVEAGTFRADLY  483
            DEIG+MP SLQ+RLLRVLQEREV+R+G+TEP+++D+R++AATH+ L AA+    FR+DLY
Sbjct  432  DEIGDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLY  491

Query  484  YRLNILNIGLPPLRERAADIPalaatllaqaarreprlaerlrdandaarvldaanaala  543
            YRLNIL +   PLRER+ DIP           +  ++      ++ +AA +     + L 
Sbjct  492  YRLNILRLQTTPLRERPEDIP--------LICQGISQRLLVQGQPPGAAGITTLLLPYLV  543

Query  544  rYRWPGNVRELQNVIERIAVELADAGERGDAAVSADTLRAIAPEVFA  590
            R  WPGNVREL+NVIER  +  ++  +  + +V  + L  + PE+F 
Sbjct  544  RHSWPGNVRELENVIERAMLSASEIFH--EHGVDEHYLARVLPELFE  588


 Score = 32.4 bits (103),  Expect = 0.078, Method: Compositional matrix adjust.
 Identities = 15/26 (58%), Positives = 19/26 (74%), Gaps = 0/26 (0%)

Query  655  CGGDRDRACARLGISKTTLWRKLAAS  680
            C G  D A  RLGIS+TTLWR+L ++
Sbjct  624  CQGSLDEAARRLGISRTTLWRRLRSA  649

66) prpR in NC_009079


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  304 bits (1140),  Expect = 8e-84, Method: Compositional matrix adjust.
 Identities = 244/587 (42%), Positives = 390/587 (67%), Gaps = 21/587 (3%)

Query  10   RPRVWAVGISRLRALFRDIADEYEERADLRIVARGYEEAI-TALATAGAERPDAIVAAGS  68
            RPR +    SRL +L  ++A  Y +  ++ ++  +  EA+ TA       ++D +V AG+
Sbjct  17   RPRQR----SRLASLVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRGKADVFVCAGA  71

Query  69   NGTYLKARVRVPVVLVNPTGFDVMHALARARRDAGRIALVSYGETPPEVRSFAAAYGLDV  128
             ++YL+ ++  PV+ +   G D+++AL +AR +++++AL+SY     ++++  + + ++V
Sbjct  72   TAAYLRRHLARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFTVQV  131

Query  129  VFASYQSAQEADTRVLEMRERGIETVVGPGLVTDLAANAGMGAVFVYSHASVRAAVNTAL  188
               +Y + +EA   VLE+   G  +++G++ V +LA +AG+ +V+  S+ + R A++ A+
Sbjct  132  HQVAYTTLEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAM  191

Query  189  EVAHATHAEALRRERLDNLLQHLRDGVVALDREGRIEAINERLALALGVSPSAAVGRALD  248
             V ++ + E  +R +LD +LQH+  GV A+D +G ++++N  LA  L ++ S+A+GR+L+
Sbjct  192  GVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQ  251

Query  249  DLTPEL---RTLRAADGDTLATVR-GVRYVVHRgplaasgga-pgsVLTFQESRAVERLD  303
            +L PEL   ++L  ++G+    +R G + VV         G   G VLT Q+  AV+R D
Sbjct  252  QLCPELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRAD  311

Query  304  RTLRSHQHAQQFTARYRLDDIVGTTPAIAYARDLARRYAKSDATVLILGESGTGKEMIAQ  363
            + +RS +++  FTARYRL+++ G++ A     +LA+R+A S++T+LI GESGTGKE++AQ
Sbjct  312  QRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQ  371

Query  364  SLHALSARRKYPFVAVNCGAFPESLLESELFGYEEGAFTGARRGGKAGLFEAAHRGTLFL  423
            ++H  S+RR  PFVA+NC+AFPESLLESELFGYEEGAF+G+R+GGK+GLFEAAHRGTLFL
Sbjct  372  GIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFL  431

Query  424  DEIGEMPPslqsrllrvlqerevvrvGSTEPVPVDIRVVAATHRPLFAAVEAGTFRADLY  483
            DEIG+MP SLQ+RLLRVLQEREV+R+G+TEP+++D+R++AATH+ L AA+    FR+DLY
Sbjct  432  DEIGDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLY  491

Query  484  YRLNILNIGLPPLRERAADIPalaatllaqaarreprlaerlrdandaaraldaanaala  543
            YRLNIL +   PLRER+ DIP           +  ++      ++ +AA       + L 
Sbjct  492  YRLNILRLQTTPLRERPEDIP--------LICQGISQRLLVQGQPPGAAGITTLLLPYLV  543

Query  544  rYRWPGNVRELQNVIERIAVELADAGERGDAAVSADTLRAIAPEVFA  590
            R  WPGNVREL+NVIER    L+ +    + +V  + L  + PE+F 
Sbjct  544  RHSWPGNVRELENVIERAM--LSASEIFHEHGVDEHYLARVLPELFE  588


 Score = 32.4 bits (103),  Expect = 0.077, Method: Compositional matrix adjust.
 Identities = 15/26 (58%), Positives = 19/26 (74%), Gaps = 0/26 (0%)

Query  646  CGGDRDRACARLGISKTTLWRKLAAS  671
            C G  D A  RLGIS+TTLWR+L ++
Sbjct  624  CQGSLDEAARRLGISRTTLWRRLRSA  649

67) bgla_2g28790 in NC_015376


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  301 bits (1129),  Expect = 6e-83, Method: Compositional matrix adjust.
 Identities = 270/668 (41%), Positives = 409/668 (62%), Gaps = 43/668 (6%)

Query  10   RPRIWAVGISRLRALFRDLADEYEERADLRIITRGYDEAIAT---LATAGAERPDAIVAA  66
            RPR +    SRL +L  +LA  Y +  ++ ++  +  EA+ T   L   G  ++D +V A
Sbjct  17   RPRQR----SRLASLVAGLAAGYPD-VHIEVLDTSVSEALQTARDLEQRG--KADVFVCA  69

Query  67   GSNGMYLKTHVEVPVVLVAPTGYdllhalararrdaaSPVALVSYGDTPAELRRFAAAFG  126
            G+ + YL+ H+  PV L    G + L       R+ +S VAL+SY     +L+   + F 
Sbjct  70   GATAAYLRRHLARPV-LTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFT  128

Query  127  LDLVFATYQSSQEAEARVRELRDRGIETVVGPGLVTDLAIGAGMNAVFLYSQASVRAAVE  186
            +++   +Y + +EA   V E+   G  +++G++ V +LA  AG+++V+  S+ + R A+E
Sbjct  129  VQVHQVAYTTLEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALE  188

Query  187  TALEVAHATHAEALRRQRLDNLLRHLRDGVVALDAGGRVEAINERLALALGVDAQAAVGR  246
             A+ V ++ + E  +R++LD +L+H+  GV A+D  G V+++N  LA  L +   +A+GR
Sbjct  189  EAMGVLDSQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGR  248

Query  247  ALDELTPELAALRAADEGDTLATVRGVRYVVHRG-----PLEASGAATGSVLTFQESRAV  301
            +L++L PEL   +A ++G+     R +R   H       P+  +G  TG VLT Q+  AV
Sbjct  249  PLQQLCPELDLQQALEDGGG-EENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAV  307

Query  302  ERLDRTLRSQPNAQRFAARYRLDDVIGASAPMARVRELAQRYAKSDATVLILGESGTGKE  361
            +R D+ +RS   +  F+ARYRL+++ GAS +   + +LA+R+A S++T+LI GESGTGKE
Sbjct  308  QRADQRIRSTRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKE  367

Query  362  MIAQSLHALSARRKFPFVATNCGAFPEALLESELFGYDEGAFTGARRGGKAGLFEAAHRG  421
            ++AQ++H  S+RR  PFVA NC+AFPE+LLESELFGY+EGAF+G+R+GGK+GLFEAAHRG
Sbjct  368  LLAQGIHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRG  427

Query  422  TLFLDEIGEMPlslqsrllrvlqerevvrlGSTEPIRIDVRIVAATHRSLLEAVEAGSFR  481
            TLFLDEIG+MP+SLQ+RLLRVLQEREV+RLG+TEPI IDVRI+AATH+ L  A+    FR
Sbjct  428  TLFLDEIGDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFR  487

Query  482  ADLYYRLNILNIALPPLRERPADIGalaaellaqaarreprlaervrdaaeaarmvapvv  541
            +DLYYRLNIL +   PLRERP DI            +  ++      +++ AA + + ++
Sbjct  488  TDLYYRLNILRLQTTPLRERPEDIP--------LICQGISQRLLVQGQPPGAAGITTLLL  539

Query  542  GVLARHRWPGNVRELQNVIERIAVELVESEGEAPLSVEALRAIAPELGIAREGATGSEAA  601
              L RH WPGNVREL+NVIER  +   E   E  +  + L  + PEL  ++  + +   +
Sbjct  540  PYLVRHSWPGNVRELENVIERAMLSASEIFHEHGVDEHYLARVLPELFEGQPQPRSRKEP  599

Query  602  DVDEDGSGVpdgagmpgaaaapTLSerrrrvevdeiravLDACGGDRERACAVLGISKTT  661
                D                  L    +  ++  I+  LD+C G  + A   LGIS+TT
Sbjct  600  SRTKD------------------LHAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTT  641

Query  662  LWRKLAAA  669
            LWR+L +A
Sbjct  642  LWRRLRSA  649

68) VAPA_1c21770 in NC_022247


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  301 bits (1128),  Expect = 7e-83, Method: Compositional matrix adjust.
 Identities = 230/488 (48%), Positives = 348/488 (72%), Gaps = 3/488 (0%)

Query  39   LARLIPELAA---EAHIELVGHAFDDAVAAVRALHARSPVDAVVAAGASGEWLRQHLDIP  95
            LA L++ LAA   + HIE+++ +  +A+ + R L+ R+  D  V AGA++  LR+HL  P
Sbjct  24   LASLVAGLAAGYPDVHIEVLDTSVSEALQTARDLEQRGKADVFVCAGATAAYLRRHLARP  83

Query  96   VAMVEVRGFDLMRALAAARAISPKVGLVSFDGPSEHLAQLDALFAMGIAQFSYRSPDDAP  155
            V  + V G DL+RAL  AR  S+ V+L+S++    +L  + +LF++ + Q +Y + ++A 
Sbjct  84   VLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFTVQVHQVAYTTLEEAR  143

Query  156  ACvealraagvgavvapglvSDLAEQAGMASVLMYSDDAVRQALQDAVHLARHSRADRAR  215
              V  +   G  ++++++ V +LAEQAG+ +VL  S+D+ R+AL++A+ +    R + A+
Sbjct  144  QAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAMGVLDSQRLEIAK  203

Query  216  HERLGTILGQLQDGVVAVDVRQRIEALNPVMADLLGAPVAELAGRVLSDVEPVLDLGATL  275
            + +L+++L ++  GV AVD +  +++LNP +A+LL  PV+   GR L ++ P LDL  +L
Sbjct  204  RRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQQLCPELDLQQAL  263

Query  276  LLRETPPEEVLQIGMRTLVVRRAPIVENGEVTGALLVCRDPAVIQRADRHLRANQRQRGA  335
                   + V+++G +++V    PI+ENGE TG +L C+D + +QRAD+++R+ +R  + 
Sbjct  264  EDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRADQRIRSTRRPGAF  323

Query  336  PARYRIEAFAGDSAPARRVRELAAQCAASDATVLVIGESGTGKELVAQGIHTASRRASQP  395
             ARYR+E + G S + R + +LA + AAS++T+L+ GESGTGKEL+AQGIH  S R   P
Sbjct  324  TARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQGIHNESPRRHGP  383

Query  396  FLAVNCAAlseslleselFGYEEGAFTGARRGGKTGLIEAAHTGTLFLDEIGDMPLAlqt  455
            F+A+NCAA++ESLLESELFGYEEGAF+G+R+GGK GL+EAAH GTLFLDEIGDMP++LQT
Sbjct  384  FVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMPVSLQT  443

Query  456  rllrvlqerevlrlGATAPVPVDLRVIAATHADLAAQVERGLFRRDLYYRLAVLRIETPP  515
            RLLRVLQEREVLRLG+T P+++D+R+IAATH DL+A +    FR DLYYRL +LR++T P
Sbjct  444  RLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLYYRLNILRLQTTP  503

Query  516  LRERGGDI  523
            LRER  DI
Sbjct  504  LRERPEDI  511

69) prpR in NC_015677


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  269 bits (1007),  Expect = 3e-73, Method: Compositional matrix adjust.
 Identities = 254/532 (48%), Positives = 372/532 (70%), Gaps = 4/532 (0%)

Query  29   IVAEYAGRADIEVVDGSFDAALGLAQERIDKGLVDVFVSAGSNASLLRAGLNVPVATIKL  88
            + A Y++  +IEV+D S   AL  A++  ++G  DVFV AG+ A+ LR  L  PV T+++
Sbjct  31   LAAGYPD-VHIEVLDTSVSEALQTARDLEQRGKADVFVCAGATAAYLRRHLARPVLTMRV  89

Query  89   GGFDLLQALIRAREVSPRVGIVTYGQTIPELDAVKALLNVDIRQYAYTTPEVARRCVAAL  148
            GG DLL+AL +ARE S++V++++Y +   +L+A+++L+ V+++Q AYTT E AR+ V  +
Sbjct  90   GGGDLLRALEQAREHSSHVALLSYNRIDRDLQAMRTLFTVQVHQVAYTTLEEARQAVLEV  149

Query  149  RADgvavvvgssvvvELAQNAGLHGLLAYSLASVRQGFedalelarvarleagrYEQLSS  208
               G   ++GSS VVELA++AGLHG+L+ S  + R+++E+A+ +    RLE ++  +L +
Sbjct  150  SRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAMGVLDSQRLEIAKRRHLDA  209

Query  209  VVHHLRQAVLAVNTEARVIAANPAMQAILGLQ--PLVGRplaelppelalqptlatGQGE  266
            V++H+  +V AV+ ++ V + NPA+  +L L   + +GRPL +L PEL LQ +L  G GE
Sbjct  210  VLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQQLCPELDLQQALEDGGGE  269

Query  267  HDTVLRLAGRDWLARRTPILEQGLVAGAALTLDDPRQIHEADNLLRIqrrrqqATTRYSF  326
            ++ V+RL+++  ++   PILE+G  +G  LT +D   ++ AD+ +R  RR    T+RY +
Sbjct  270  ENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRADQRIRSTRRPGAFTARYRL  329

Query  327  GSLLGQAPAFLAAVQTARRYARSGQGILITGESGVGKELFAQAIHDAGPQAKRPFVAVNC  386
              L G + A    +Q A+R+A S   ILITGESG GKEL+AQ+IH+ +P+   PFVA+NC
Sbjct  330  EQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQGIHNESPRRHGPFVAINC  389

Query  387  AAFPESLLESELFGHeegaftgarrggrrglfeaaHTGTLFLDEIGDMPLALQSRLLRVL  446
            AAFPESLLESELFG EEGAF+G+R+GG+ GLFEAAH GTLFLDEIGDMP++LQ+RLLRVL
Sbjct  390  AAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMPVSLQTRLLRVL  449

Query  447  QEREVTRLGGTAAIPVDVCVIAATHRDLAALVAEGRFRQDLYYRINTlplalpalRERRQ  506
            QEREV RLGGT +I++DV +IAATH+DL+A + +  FR DLYYR+N L L   +LRER +
Sbjct  450  QEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLYYRLNILRLQTTPLRERPE  509

Query  507  DILPLAEAllrrglgrlgSTVEPRQVLAPLRGALESHPWPGNIRELENAMER  558
            DI PL    + + L   G    +  + + L   L  H+WPGN+RELEN +ER
Sbjct  510  DI-PLICQGISQRLLVQGQPPGAAGITTLLLPYLVRHSWPGNVRELENVIER  560


 Score = 32.7 bits (104),  Expect = 0.064, Method: Compositional matrix adjust.
 Identities = 15/24 (63%), Positives = 20/24 (84%), Gaps = 0/24 (0%)

Query  617  GRHGEAARALGVSRSTLWRWLREG  640
            G  +EAAR LG+SR+TLWR+LR +
Sbjct  626  GSLDEAARRLGISRTTLWRRLRSA  649

70) DelCs14_3219 in NC_015563


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  265 bits (990),  Expect = 6e-72, Method: Compositional matrix adjust.
 Identities = 259/632 (41%), Positives = 415/632 (66%), Gaps = 25/632 (3%)

Query  45   QVRVEHVSAAFDDAVQAVRALQAVEPIDALVAAGASGAWVREHVDIPVVMIEVRGFDLLQ  104
            +V++E + ++  +A+Q+ R L+     D +V AGA++A +R H+  PV+ + V G DLL+
Sbjct  37   DVHIEVLDTSVSEALQTARDLEQRGKADVFVCAGATAAYLRRHLARPVLTMRVGGGDLLR  96

Query  105  ALASARELAQAGGTPRIGLVSFDHPSPHLAQFDALFGAGIAQFSYHGPEDAQACvralqa  164
            AL  ARE      +++++L+S+++   +L    +LF   + Q +Y   E+A+  V  +  
Sbjct  97   ALEQARE-----HSSHVALLSYNRIDRDLQAMRTLFTVQVHQVAYTTLEEARQAVLEVSR  151

Query  165  agvgavvapglvadlaEQAGIPSVLLYSDGAVLQALRDAVllarhrhaerarhqrleTVL  224
             G  ++++++ V +LAEQAG+ +VL  S+++  +AL +A+ +   ++ E A++++L++VL
Sbjct  152  LGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAMGVLDSQRLEIAKRRHLDAVL  211

Query  225  GQLQDGVVAVDTQGCIQALNPTMAALLGAPARALHGRLLDEVAPalalaqalqsqslEPE  284
             ++  GV AVD QG +Q+LNP++A LL  P  +  GR L+++ P L L QAL     E  
Sbjct  212  QHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQQLCPELDLQQAL-----EDG  266

Query  285  GSED--VVQLAMRTLVVRRAPIVENGQLTGALLVCRDPATIQRADRHLRANRSLRGAGVR  342
            G+E+  V++L+ +++V    PI+ENG+ TG +L C+D +++QRAD+++R+ R   +   R
Sbjct  267  GGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRADQRIRSTRRPGAFTAR  326

Query  343  WRIEDYAGDSEPAQRVRRLARQFAASDATVLIQGDSGTGKELLAQGMHRASRRAAQPFLA  402
             R+E+  G S + + + +LA++FAAS++T+LI G+SGTGKELLAQG+H  S R   PF+A
Sbjct  327  YRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQGIHNESPRRHGPFVA  386

Query  403  VNCAALGeslleselFGYDEGAFTGARRGGKTGLIEAAHTGTLFLDEIGDMPLAlqsrll  462
            +NCAA+ ESLLESELFGY+EGAF+G+R+GGK GL+EAAH GTLFLDEIGDMP++LQ+RLL
Sbjct  387  INCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMPVSLQTRLL  446

Query  463  rvlqerevlrvGSTTSVPVDLRVIAATHADLATLVERGEFRRDLFYRLAVLRLAMPGLHE  522
            RVLQEREVLR+G+T ++++D+R+IAATH DL++ +   EFR DL+YRL +LRL    L+E
Sbjct  447  RVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLYYRLNILRLQTTPLRE  506

Query  523  RGQGDVQalartmlarrlrtQslqaessslepllealldlaaaHRWPGNARELDNWVER-  581
            R ++             ++ Q     +++   +   LL     H WPGN REL+N +ER 
Sbjct  507  RPEDIPLICQGISQRLLVQGQ-----PPGAAGITTLLLPYLVRHSWPGNVRELENVIERA  561

Query  582  LLACRHDLRD-GAGRVDMGR-LRELFPECDGAGQGTVqalpaqqrqlqlrearrdaERQR  639
            +L+  + +++ G +   ++R L ELF      GQ   ++     R  +L+   + A+ + 
Sbjct  562  MLSASEIFHEHGVDEHYLARVLPELF-----EGQPQPRSRKEPSRTKDLHAIGKTAQLRY  616

Query  640  MREVLEQVQGDQRRACEILGISRATLWRRLRS  671
            ++E L+  QG    A   LGISR+TLWRRLRS
Sbjct  617  IQETLDSCQGSLDEAARRLGISRTTLWRRLRS  648

71) Daci_3582 in NC_010002


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  265 bits (990),  Expect = 7e-72, Method: Compositional matrix adjust.
 Identities = 260/632 (42%), Positives = 415/632 (66%), Gaps = 25/632 (3%)

Query  52   QVRVEHVSAAFDDAVQAVRALQAVEPIDALVAAGASGAWVREHVDIPVVMIEVRGFDLLQ  111
            +V++E + ++  +A+Q+ R L+     D +V AGA++A +R H+  PV+ + V G DLL+
Sbjct  37   DVHIEVLDTSVSEALQTARDLEQRGKADVFVCAGATAAYLRRHLARPVLTMRVGGGDLLR  96

Query  112  ALASARELAQAGGTPRIGLVSFDHPSPHLAQFDALFGAGIAQFSYHGPEDAQACvralqa  171
            AL  ARE      +++++L+S+++   +L    +LF   + Q +Y   E+A+  V  +  
Sbjct  97   ALEQARE-----HSSHVALLSYNRIDRDLQAMRTLFTVQVHQVAYTTLEEARQAVLEVSR  151

Query  172  agvgavvapglvadlaEQAGIPSVLLYSDGAVLQALRDAVllarhrhaerarhqrleTVL  231
             G  ++++++ V +LAEQAG+ +VL  S+++  +AL +A+ +   ++ E A++++L++VL
Sbjct  152  LGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAMGVLDSQRLEIAKRRHLDAVL  211

Query  232  GQLQDGVVAVDTQGCIQALNPTMAALLGAPARALHGRLLDEVAPalalaqalqsqslEPE  291
             ++  GV AVD QG +Q+LNP++A LL  P  +  GR L+++ P L L QAL     E  
Sbjct  212  QHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQQLCPELDLQQAL-----EDG  266

Query  292  GSED--VVQLAMRTLVVRRAPIVENGQLTGALLVCRDPATIQRADRHLRANRSLRGAGVR  349
            G+E+  V++L+ +++V    PI+ENG+ TG +L C+D +++QRAD+++R+ R   +   R
Sbjct  267  GGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRADQRIRSTRRPGAFTAR  326

Query  350  WRIEDYAGDSEPAQRVRRLARQFAASDATVLIQGDSGTGKELLAQGMHRASRRAAQPFLA  409
             R+E+  G S + + + +LA++FAAS++T+LI G+SGTGKELLAQG+H  S R   PF+A
Sbjct  327  YRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQGIHNESPRRHGPFVA  386

Query  410  VNCAALGeslleselFGYDEGAFTGARRGGKTGLIEAAHTGTLFLDEIGDMPLAlqsrll  469
            +NCAA+ ESLLESELFGY+EGAF+G+R+GGK GL+EAAH GTLFLDEIGDMP++LQ+RLL
Sbjct  387  INCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMPVSLQTRLL  446

Query  470  rvlqerevlrvGSTTSVPVDLRVIAATHADLAALVERGEFRRDLFYRLAVLRLAMPGLHE  529
            RVLQEREVLR+G+T ++++D+R+IAATH DL+A +   EFR DL+YRL +LRL    L+E
Sbjct  447  RVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLYYRLNILRLQTTPLRE  506

Query  530  RGQGDVQalartmlarrlrtQslqaessslepllealldlaaaHRWPGNARELDNWVER-  588
            R ++             ++ Q     +++   +   LL     H WPGN REL+N +ER 
Sbjct  507  RPEDIPLICQGISQRLLVQGQ-----PPGAAGITTLLLPYLVRHSWPGNVRELENVIERA  561

Query  589  LLACRHDLRD-GAGRVDMGR-LRELFPECDGAGQGTVqalpaqqrqlqlrearrdaERQR  646
            +L+  + +++ G +   ++R L ELF      GQ   ++     R  +L+   + A+ + 
Sbjct  562  MLSASEIFHEHGVDEHYLARVLPELF-----EGQPQPRSRKEPSRTKDLHAIGKTAQLRY  616

Query  647  MREVLEQVQGDQRRACEILGISRATLWRRLRS  678
            ++E L+  QG    A   LGISR+TLWRRLRS
Sbjct  617  IQETLDSCQGSLDEAARRLGISRTTLWRRLRS  648

72) Desru_3359 in NC_015589


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  253 bits (945),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 188/456 (42%), Positives = 301/456 (67%), Gaps = 29/456 (6%)

Query  79   EKERQIRAVLDSVSDGIIAVDRKGKITVFNPACEKILRMSSEQALGKNMSEVLSMDIPMI  138
             K R++ AVL+ ++ G+ AVD +G +  +NPA  ++L ++   ALG+ + + L  ++ + 
Sbjct  202  AKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQQ-LCPELDLQ  260

Query  139  DSLRNGESYDNREIMITTPRGRHHYLSTGRPIKDQDGRGIGMVAALKDMSQVR---DLVY  195
            ++L +G + +NR I +    G H  +S   PI +++ R  G+V + +D++ V+   + + 
Sbjct  261  QALEDGGGEENRVIRL----GSHAVVSNLLPILENGERT-GLVLTCQDITAVQRADQRIR  315

Query  196  SVTKPSMLT----FDDIIYGSEAMERVIVLAKRVARSDSTVMIRGESGTGKELFARAIHM  251
            S  +P+ +T    ++++  +S A   ++ LAKR A S+ST++I GESGTGKEL+A++IH 
Sbjct  316  STRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQGIHN  375

Query  252  NSPRRNKPFVPLNCAALPDSLLESELFGYADGAFTGAKKGGKQGLFEFAHEGTLFLDEIG  311
            +SPRR+ PFV++NCAA+P+SLLESELFGY +GAF+G++KGGK GLFE AH GTLFLDEIG
Sbjct  376  ESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIG  435

Query  312  ELTPHLQAKLLRVLQDGKVRRIGDGHEMVVNVRVIAATNRDLEEMLTRGGFREDLYYRLN  371
            ++   LQ++LLRVLQ+  V R+G+ + + ++VR+IAAT++DL   +    FR DLYYRLN
Sbjct  436  DMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLYYRLN  495

Query  372  VFPIRLPTLRERPEDIPFLVQHFLKKF---GQEPGKEFTGISVGALRMLTRHRWVGNVRE  428
            ++ ++   LRERPEDIP++ Q + +++   GQ PG   +GI+   L  L RH W GNVRE
Sbjct  496  ILRLQTTPLRERPEDIPLICQGISQRLLVQGQPPGA--AGITTLLLPYLVRHSWPGNVRE  553

Query  429  LENVIVRAINLVEKGEIKPEHIILDE--GR-----FTKRENPHE-DENGNPVSLKEAAAQ  480
            LENVI RA  ++  +EI  EH + ++  +R     F  + +P+   E +    L   +  
Sbjct  554  LENVIERA--MLSASEIFHEHGVDEHYLARVLPELFEGQPQPRSRKEPSRTKDLHAIGKT  611

Query  481  AELDTLQTALKT-HGSARKAAKALGVSHTTVLNKIR  515
            A+L  +Q +L + +GS   AA+ LG+S+TT+  ++R
Sbjct  612  AQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLR  647

73) CtCNB1_1263 in NC_013446


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  251 bits (938),  Expect = 8e-68, Method: Compositional matrix adjust.
 Identities = 264/643 (42%), Positives = 430/643 (67%), Gaps = 19/643 (2%)

Query  25   RYRVGRVLERLAQPWSGEARFSHISASFDDAVAQVQALNLRQPIDALVGAGASGAWIRER  84
            R R++ ++  LA   + + ++  + +S  +A+   + L+ R   D +V AGA++A +R +
Sbjct  21   RSRLASLVAGLAAGYP-DVHIEVLDTSVSEALQTARDLEQRGKADVFVCAGATAAYLRRH  79

Query  85   VDIPMAMVEVRGldllqalrqaklqaTEEAPRVGLVNFEVPSPVVAQFDSLFGLGLVQIA  144
            +  P+  + V G DLL+AL QA     E++++V+L++++     +    +LF + + Q+A
Sbjct  80   LARPVLTMRVGGGDLLRALEQA----REHSSHVALLSYNRIDRDLQAMRTLFTVQVHQVA  135

Query  145  YQGPHDAPACVQKLKaegvgavvapglvaDLAEQAGMASVLLYSDISVRQALSDAMLlar  204
            Y   ++A   V  +   G  ++++++ V +LAEQAG+ +VL  S+ + R+AL +AM +  
Sbjct  136  YTTLEEARQAVLEVSRLGCRSIIGSSTVVELAEQAGLHGVLSLSEDTARKALEEAMGVLD  195

Query  205  hrraerdrhqrleTVLHQLQDGVAAVDERGRICALNPRMAALLGTPVDALHGRMLEEVAP  264
             +R E  ++++L++VL+++  GVAAVD++G + +LNP +A LL  PV +  GR L+++ P
Sbjct  196  SQRLEIAKRRHLDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQQLCP  255

Query  265  algtaralageeggeevvql-alRTLVVRRAPIVENGLVTGALLVCRDPAVIQRADRSLR  323
             L+  +AL +  G E+ V   + +++V    PI+ENG  TG +L C+D + +QRAD+ +R
Sbjct  256  ELDLQQALEDGGGEENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRADQRIR  315

Query  324  ANQRQRAAGVRWRIEDYLGSSPAAQRVRLLARQYANSDATVLILGESGTGKELVAQGIHS  383
            + +R  A   R R+E+  G+S A + +  LA+++A S++T+LI GESGTGKEL+AQGIH+
Sbjct  316  STRRPGAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQGIHN  375

Query  384  AGRRAEQPFLAVNCAAlseslleselFGYEEGAFTGARRGGKTGLVEAAHTGTLFLDEIG  443
             + R + PF+A+NCAA++ESLLESELFGYEEGAF+G+R+GGK GL EAAH GTLFLDEIG
Sbjct  376  ESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIG  435

Query  444  DMPLAlqsrllrvlqerevlrvGSTTPIPVDVRVIAATHADLADQVERGRFRRDLYYRLA  503
            DMP++LQ+RLLRVLQEREVLR+G+T PI++DVR+IAATH DL+  +    FR DLYYRL 
Sbjct  436  DMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLYYRLN  495

Query  504  VLRLSTPSLQMRGGADVAELGRAMLAQRLNAASELPRALHDRVEQQLDALLARAAVHDWP  563
            +LRL T +L+ R   D++ + +++ +QRL   ++ P A    +   L + L R   H WP
Sbjct  496  ILRLQTTPLRER-PEDIPLICQGI-SQRLLVQGQPPGA--AGITTLLLPYLVR---HSWP  548

Query  564  GNVRELDNWVER-LLACSD-YLDSGRGGLLDMARLL-EVFPECADGlapaepaaarqaql  620
            GNVREL+N +ER +L+ S+ + + G +    +AR+L E+F   ++  + +   ++R  +L
Sbjct  549  GNVRELENVIERAMLSASEIFHEHGVDEHY-LARVLPELFE--GQPQPRSRKEPSRTKDL  605

Query  621  rDAGRLAEQKRLREVLESVGGDQRQACEILGISRATLWRRMKA  663
            +  G+ A+ + ++E L+S  G   +A   LGISR+TLWRR+++
Sbjct  606  HAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLRS  648

74) Desku_1660 in NC_015573


> AF241171|5|G5|12698381|AAK01495.1|Pseudomonas_aeruginosa_X24509|-|5777..7729|-|-|propionate 
catabolism operon regulator prpR
Length=650

 Score =  240 bits (894),  Expect = 2e-64, Method: Compositional matrix adjust.
 Identities = 185/462 (41%), Positives = 304/462 (66%), Gaps = 42/462 (9%)

Query  132  LENIFHSTHEGYIATGNDGRILMINGPMAELLGVTIETAVGRHIREVAPDKRLHQILWSG  191
            L+ +++    G  A +N+G +  +N ++A+LL + + +A+GR ++++ P+  L+Q L  G
Sbjct  207  LDAVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQQLCPELDLQQALEDG  266

Query  192  KLQYGEVVRIRGRETVVMRVPLYNQGKLVGAVSKVMFQDVEQLLALAEKISIQRRSSFCP  251
              +   V+R+ ++  V   +P+ ++G   G V  +  QD+  +    ++I   RR++   
Sbjct  267  GGEENRVIRLGSHAVVSNLLPILENGERTGLV--LTCQDITAVQRADQRIRSTRRPG---  321

Query  252  SVTHNDNHTARYTVDNLIGAS---RDMLRLKETIRRVAQGPSTVLIRGESGTGKELVAHA  308
                    TARY +++L GAS   R+ML+L    +R A + ST+LI GESGTGKEL+A++
Sbjct  322  ------AFTARYRLEQLNGASKANREMLQL---AKRFAASHSTILITGESGTGKELLAQG  372

Query  309  LHTASPRHRGPFIKVNCAAVPENLLESELFGYQEGAFTGARKGGQIGKFEQADGGTIFLD  368
            +H  SPR++GPF+ +NCAA PE+LLESELFGY+EGAF+G+RKGG+ G FE A+ GT+FLD
Sbjct  373  IHNESPRRHGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLD  432

Query  369  EIGDMPLPMQAKILRVLQEKEIERLGdtrpravdvrvvaatnrdLEELIRQGHFREDLYY  428
            EIGDMP+++Q+++LRVLQE+E+ RLG+T P ++DVR++AAT++DL   +++ +FR DLYY
Sbjct  433  EIGDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKDREFRTDLYY  492

Query  429  RLNVVSLYIPPLRERPDDIPLLVNHFIKKFNREFGLLVRGVSP---EVSEILYTY----D  481
            RLN++ L   PLRERP+DIPL+ + + ++      LLV+G +P    ++ +L  Y     
Sbjct  493  RLNILRLQTTPLRERPEDIPLICQGISQR------LLVQGQPPGAAGITTLLLPYLVRHS  546

Query  482  WPGNVRELENVMERAFNLVEGDIIE---------VKHMPPYLQKASQGRKRNLHNRT--L  530
            WPGNVRELENV+ERA  L  ++I++          + +P  ++  +Q R R+  +RT  L
Sbjct  547  WPGNVRELENVIERAM-LSASEIFHEHGVDEHYLARVLPELFEGQPQPRSRKEPSRTKDL  605

Query  531  ATllqevekeallealaaaGGNKMQAAKTLGISRAWLYKKMK  572
             ++ +  +   + E+L +  G+  +AA+ LGISR+ L ++++
Sbjct  606  HAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLR  647


 Score = 40.0 bits (132),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 32/110 (30%), Positives = 63/110 (58%), Gaps = 0/110 (0%)

Query  17   SIFNSVHNMVVAVDYQGRVIIFNPTSERIFNYPAEKALGRPIREVVPFTGLPKVLQTGKP  76
            ++++ + + V AVD QG V  +NP+  ++++ P   ALGRP++++ P  +L + L+ G  
Sbjct  209  AVLQHIPSGVAAVDNQGVVQSLNPALAQLLELPVSSALGRPLQQLCPELDLQQALEDGGG  268

Query  77   HIGRKFVVGNALYVVnrtpiirnntiiGAIGVAQEITELQHLAQELKEIK  126
            +  R + +G+   V N  PI+ N    G +   Q+IT +Q+  Q ++  +
Sbjct  269  EENRVIRLGSHAVVSNLLPILENGERTGLVLTCQDITAVQRADQRIRSTR  318