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Homologs of tnpB gene of AF141323

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) S4832
( NP_839235.1 )

IS3 orfB

NC_004741
(Shigella flexneri 2457T)

5e-58

100

2) SFV_3866
( YP_691181.1 )

IS3 ORF2

NC_008258
(Shigella flexneri 8401)

5e-58

100

3) S2862
( NP_838193.1 )

IS3 orfB

NC_004741
(Shigella flexneri 2457T)

3e-40

4) SPUCDC_1876
( YP_008481510.1 )

hypothetical protein

NC_022221
(Salmonella enterica CDC1983-67)

6e-36

5) SPUL_1890
( YP_005213052.1 )

hypothetical protein

NC_016831
(Salmonella enterica RKS5078)

6e-36

6) SSON_P124
( YP_313379.1 )

IS3 ORF2

NC_007385
(Shigella sonnei Ss046)

2e-33

7) D781_1367
( YP_007343862.1 )

hypothetical protein

NC_020064
(Serratia marcescens FGI94)

3e-32

8) Ser39006_2140
( YP_008522522.1 )

Integrase catalytic region

NC_022268
(Serratia sp. ATCC 39006)

6e-30

9) SPUCDC_2635
( YP_008482233.1 )

hypothetical protein

NC_022221
(Salmonella enterica CDC1983-67)

3e-28

10) SeD_A0356
( YP_002214279.1 )

transposase

NC_011205
(Salmonella enterica CT_02021853)

3e-28

11) SPUL_2649
( YP_005213775.1 )

hypothetical protein

NC_016831
(Salmonella enterica RKS5078)

3e-28

12) I137_12050
( YP_008381832.1 )

transposase

NC_021984
(Salmonella enterica S06004)

4e-25

13) Hhal_1292
( YP_001002865.1 )

IS3 ORF2

NC_008789
(Halorhodospira halophila SL1)

7e-20

14) CDC7B_2038
( YP_005163479.1 )

transposase-like protein

NC_016801
(Corynebacterium diphtheriae C7 (beta))

2e-11

• Sequence Alignments

1) S4832 in NC_004741


> AF141323|5|G5|5532450|AAD44734.1|Shigella_flexneri_5a_str._M90T|-|4360..4752|tnpB|-|TnpB
Length=130

 Score =  216 bits (805),  Expect = 5e-58, Method: Compositional matrix adjust.
 Identities = 130/130 (100%), Positives = 130/130 (100%), Gaps = 0/130 (0%)

Query  1    MKYVFIENHRAEFSIKAMCRVLRVARSGWYVWLRRRHQMSLRQQFRLTCDAAVHKAFFEA  60
            MKYVFIENHRAEFSIKAMCRVLRVARSGWYVWLRRRHQMSLRQQFRLTCDAAVHKAFFEA
Sbjct  1    MKYVFIENHRAEFSIKAMCRVLRVARSGWYVWLRRRHQMSLRQQFRLTCDAAVHKAFFEA  60

Query  61   KQRYGAPRLADELPEFNIKTIAASLRRQGLRAKASRKFSPVSYRAHGLPVLENLLEQDFS  120
            KQRYGAPRLADELPEFNIKTIAASLRRQGLRAKASRKFSPVSYRAHGLPVLENLLEQDFS
Sbjct  61   KQRYGAPRLADELPEFNIKTIAASLRRQGLRAKASRKFSPVSYRAHGLPVLENLLEQDFS  120

Query  121  ASGPKPEVGG  130
            ASGPKPEVGG
Sbjct  121  ASGPKPEVGG  130

2) SFV_3866 in NC_008258


> AF141323|5|G5|5532450|AAD44734.1|Shigella_flexneri_5a_str._M90T|-|4360..4752|tnpB|-|TnpB
Length=130

 Score =  216 bits (805),  Expect = 5e-58, Method: Compositional matrix adjust.
 Identities = 130/130 (100%), Positives = 130/130 (100%), Gaps = 0/130 (0%)

Query  1    MKYVFIENHRAEFSIKAMCRVLRVARSGWYVWLRRRHQMSLRQQFRLTCDAAVHKAFFEA  60
            MKYVFIENHRAEFSIKAMCRVLRVARSGWYVWLRRRHQMSLRQQFRLTCDAAVHKAFFEA
Sbjct  1    MKYVFIENHRAEFSIKAMCRVLRVARSGWYVWLRRRHQMSLRQQFRLTCDAAVHKAFFEA  60

Query  61   KQRYGAPRLADELPEFNIKTIAASLRRQGLRAKASRKFSPVSYRAHGLPVLENLLEQDFS  120
            KQRYGAPRLADELPEFNIKTIAASLRRQGLRAKASRKFSPVSYRAHGLPVLENLLEQDFS
Sbjct  61   KQRYGAPRLADELPEFNIKTIAASLRRQGLRAKASRKFSPVSYRAHGLPVLENLLEQDFS  120

Query  121  ASGPKPEVGG  130
            ASGPKPEVGG
Sbjct  121  ASGPKPEVGG  130

3) S2862 in NC_004741


> AF141323|5|G5|5532450|AAD44734.1|Shigella_flexneri_5a_str._M90T|-|4360..4752|tnpB|-|TnpB
Length=130

 Score =  157 bits (581),  Expect = 3e-40, Method: Compositional matrix adjust.
 Identities = 99/133 (75%), Positives = 110/133 (83%), Gaps = 4/133 (3%)

Query  1    MKYVFIEKHQAEFSIKAMCRVLRVARSGWYTWCQRRTRISTRQQFRQHCDSVVLAAFTRS  60
            MKYVFIE+H+AEFSIKAMCRVLRVARSGWY W +RR ++S RQQFR  CD+ V  AF  +
Sbjct  1    MKYVFIENHRAEFSIKAMCRVLRVARSGWYVWLRRRHQMSLRQQFRLTCDAAVHKAFFEA  60

Query  61   KQRYGAPRLTDELRAQGYPFNVKTVAASLRRQGLRAKASRKFSPVSYRAHGLPVSENLLE  120
            KQRYGAPRL+DEL      FN+KT+AASLRRQGLRAKASRKFSPVSYRAHGLPV ENLLE
Sbjct  61   KQRYGAPRLADELPE----FNIKTIAASLRRQGLRAKASRKFSPVSYRAHGLPVLENLLE  116

Query  121  QDFYCQWPEPEVA  133
            QDF    P PEV+
Sbjct  117  QDFSASGPKPEVG  129

4) SPUCDC_1876 in NC_022221


> AF141323|5|G5|5532450|AAD44734.1|Shigella_flexneri_5a_str._M90T|-|4360..4752|tnpB|-|TnpB
Length=130

 Score =  143 bits (526),  Expect = 6e-36, Method: Compositional matrix adjust.
 Identities = 95/130 (74%), Positives = 112/130 (87%), Gaps = 4/130 (3%)

Query  1    MKYVFIENHQAEFNIKAMCRVLQIARSGWYVWHqrrhqinrrqrfrLVCDNVVREAFSDA  60
            MKYVFIENH+AEF+IKAMCRVL++ARSGWYVW +RRHQ++ RQ+FRL CD  V+ AF +A
Sbjct  1    MKYVFIENHRAEFSIKAMCRVLRVARSGWYVWLRRRHQMSLRQQFRLTCDAAVHKAFFEA  60

Query  61   KQRYGASRLTDELRAQDYQFNVKTVAASLRRQGLRAKASRRFRPVSYRKHGLPVSENLLK  120
            KQRYGA+RL+DEL     +FN+KT+AASLRRQGLRAKASR+F PVSYR HGLPV ENLL 
Sbjct  61   KQRYGAPRLADELP----EFNIKTIAASLRRQGLRAKASRKFSPVSYRAHGLPVLENLLE  116

Query  121  QDFYASGPNQ  130
            QDF ASGP+ 
Sbjct  117  QDFSASGPKP  126

5) SPUL_1890 in NC_016831


> AF141323|5|G5|5532450|AAD44734.1|Shigella_flexneri_5a_str._M90T|-|4360..4752|tnpB|-|TnpB
Length=130

 Score =  143 bits (526),  Expect = 6e-36, Method: Compositional matrix adjust.
 Identities = 95/130 (74%), Positives = 112/130 (87%), Gaps = 4/130 (3%)

Query  1    MKYVFIENHQAEFNIKAMCRVLQIARSGWYVWHqrrhqinrrqrfrLVCDNVVREAFSDA  60
            MKYVFIENH+AEF+IKAMCRVL++ARSGWYVW +RRHQ++ RQ+FRL CD  V+ AF +A
Sbjct  1    MKYVFIENHRAEFSIKAMCRVLRVARSGWYVWLRRRHQMSLRQQFRLTCDAAVHKAFFEA  60

Query  61   KQRYGASRLTDELRAQDYQFNVKTVAASLRRQGLRAKASRRFRPVSYRKHGLPVSENLLK  120
            KQRYGA+RL+DEL     +FN+KT+AASLRRQGLRAKASR+F PVSYR HGLPV ENLL 
Sbjct  61   KQRYGAPRLADELP----EFNIKTIAASLRRQGLRAKASRKFSPVSYRAHGLPVLENLLE  116

Query  121  QDFYASGPNQ  130
            QDF ASGP+ 
Sbjct  117  QDFSASGPKP  126

6) SSON_P124 in NC_007385


> AF141323|5|G5|5532450|AAD44734.1|Shigella_flexneri_5a_str._M90T|-|4360..4752|tnpB|-|TnpB
Length=130

 Score =  134 bits (493),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 86/118 (73%), Positives = 96/118 (82%), Gaps = 5/118 (4%)

Query  1    MKYVFIEKHQAEFSIKAMCRVLRVARSGWYTWCQRRTGISPRQQFRQHCDSVVLAAAFTR  60
            MKYVFIE+H+AEFSIKAMCRVLRVARSGWY W +RR  +S RQQFR  CD+ V   AF  
Sbjct  1    MKYVFIENHRAEFSIKAMCRVLRVARSGWYVWLRRRHQMSLRQQFRLTCDAAV-HKAFFE  59

Query  61   SKQRYGAPRLTDELRAQGYHFNVKTVAASLRRQGLRAKASRKFSPVSYRAHGLRCTGN  118
            +KQRYGAPRL+DEL     +FN+KT+AASLRRQGLRAKASRKFSPVSYRAHGL    N
Sbjct  60   AKQRYGAPRLADELP----EFNIKTIAASLRRQGLRAKASRKFSPVSYRAHGLPVLEN  113

7) D781_1367 in NC_020064


> AF141323|5|G5|5532450|AAD44734.1|Shigella_flexneri_5a_str._M90T|-|4360..4752|tnpB|-|TnpB
Length=130

 Score =  131 bits (480),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 86/106 (82%), Positives = 98/106 (93%), Gaps = 0/106 (0%)

Query  1    MKYVFIEKHQAEFSIKAMCRVLQVARSGWYAWrqrrhqinrrqqfrLVCDDAVRQTFAKA  60
            MKYVFIE+H+AEFSIKAMCRVL+VARSGWY W +RRHQ++ RQQFRL CD AV+++F  A
Sbjct  1    MKYVFIENHRAEFSIKAMCRVLRVARSGWYVWLRRRHQMSLRQQFRLTCDAAVHKAFFEA  60

Query  61   KQRYGAPRLADELPEYNIKTIAASLRRQGLRAKASRRFSPLSYREH  106
            KQRYGAPRLADELPE+NIKTIAASLRRQGLRAKASR+FSP+SYR H
Sbjct  61   KQRYGAPRLADELPEFNIKTIAASLRRQGLRAKASRKFSPVSYRAH  106

8) Ser39006_2140 in NC_022268


> AF141323|5|G5|5532450|AAD44734.1|Shigella_flexneri_5a_str._M90T|-|4360..4752|tnpB|-|TnpB
Length=130

 Score =  123 bits (450),  Expect = 6e-30, Method: Compositional matrix adjust.
 Identities = 78/113 (70%), Positives = 87/113 (77%), Gaps = 7/113 (6%)

Query  1    MCRVLRIACSGWYAWRIRRCQTTPRQQFRLTCDEAVRSAF-------NAPRLAMALPEYN  53
            MCRVLR+A SGWY W  RR Q + RQQFRLTCD AV+ AF        APRLA  LPE+N
Sbjct  18   MCRVLRVARSGWYVWLRRRHQMSLRQQFRLTCDAAVHKAFFEAKQRYGAPRLADELPEFN  77

Query  54   IKTIASSLRRQGLRAKASRKFSQVNYREHGLPVSENLLKQDFSASDPNQKWAG  106
            IKTIA+SLRRQGLRAKASRKFS V+YR HGLPV ENLL QDFSAS+P+   +G
Sbjct  78   IKTIAASLRRQGLRAKASRKFSPVSYRAHGLPVLENLLEQDFSASGPKPEVGG  130

9) SeD_A0356 in NC_011205


> AF141323|5|G5|5532450|AAD44734.1|Shigella_flexneri_5a_str._M90T|-|4360..4752|tnpB|-|TnpB
Length=130

 Score =  118 bits (429),  Expect = 3e-28, Method: Compositional matrix adjust.
 Identities = 91/130 (70%), Positives = 110/130 (85%), Gaps = 4/130 (3%)

Query  1    MKYVFIEKHQAEFNIKAMCRVLQIARSGWYVWHqrrhqinqrqrfrLVCDNVVREAFSDA  60
            MKYVFIE+H+AEF+IKAMCRVL++ARSGWYVW +RRHQ++ RQ+FRL CD  V+ AF +A
Sbjct  1    MKYVFIENHRAEFSIKAMCRVLRVARSGWYVWLRRRHQMSLRQQFRLTCDAAVHKAFFEA  60

Query  61   KQRYGAPRLTDELRAQGYQFNVKTVAASLrrqgrrakasrrfrPVSYRKHDLPVSENWLK  120
            KQRYGAPRL+DEL     +FN+KT+AASLRRQG RAKASR+F PVSYR H+LPV EN L 
Sbjct  61   KQRYGAPRLADELP----EFNIKTIAASLRRQGLRAKASRKFSPVSYRAHGLPVLENLLE  116

Query  121  QDFYTSGPNQ  130
            QDF +SGP+ 
Sbjct  117  QDFSASGPKP  126

10) SPUCDC_2635 in NC_022221


> AF141323|5|G5|5532450|AAD44734.1|Shigella_flexneri_5a_str._M90T|-|4360..4752|tnpB|-|TnpB
Length=130

 Score =  118 bits (429),  Expect = 3e-28, Method: Compositional matrix adjust.
 Identities = 91/130 (70%), Positives = 110/130 (85%), Gaps = 4/130 (3%)

Query  1    MKYVFIEKHQAEFNIKAMCRVLQIARSGWYVWHqrrhqinqrqrfrLVCDNVVREAFSDA  60
            MKYVFIE+H+AEF+IKAMCRVL++ARSGWYVW +RRHQ++ RQ+FRL CD  V+ AF +A
Sbjct  1    MKYVFIENHRAEFSIKAMCRVLRVARSGWYVWLRRRHQMSLRQQFRLTCDAAVHKAFFEA  60

Query  61   KQRYGAPRLTDELRAQGYQFNVKTVAASLrrqgrrakasrrfrPVSYRKHDLPVSENWLK  120
            KQRYGAPRL+DEL     +FN+KT+AASLRRQG RAKASR+F PVSYR H+LPV EN L 
Sbjct  61   KQRYGAPRLADELP----EFNIKTIAASLRRQGLRAKASRKFSPVSYRAHGLPVLENLLE  116

Query  121  QDFYTSGPNQ  130
            QDF +SGP+ 
Sbjct  117  QDFSASGPKP  126

11) SPUL_2649 in NC_016831


> AF141323|5|G5|5532450|AAD44734.1|Shigella_flexneri_5a_str._M90T|-|4360..4752|tnpB|-|TnpB
Length=130

 Score =  118 bits (429),  Expect = 3e-28, Method: Compositional matrix adjust.
 Identities = 91/130 (70%), Positives = 110/130 (85%), Gaps = 4/130 (3%)

Query  1    MKYVFIEKHQAEFNIKAMCRVLQIARSGWYVWHqrrhqinqrqrfrLVCDNVVREAFSDA  60
            MKYVFIE+H+AEF+IKAMCRVL++ARSGWYVW +RRHQ++ RQ+FRL CD  V+ AF +A
Sbjct  1    MKYVFIENHRAEFSIKAMCRVLRVARSGWYVWLRRRHQMSLRQQFRLTCDAAVHKAFFEA  60

Query  61   KQRYGAPRLTDELRAQGYQFNVKTVAASLrrqgrrakasrrfrPVSYRKHDLPVSENWLK  120
            KQRYGAPRL+DEL     +FN+KT+AASLRRQG RAKASR+F PVSYR H+LPV EN L 
Sbjct  61   KQRYGAPRLADELP----EFNIKTIAASLRRQGLRAKASRKFSPVSYRAHGLPVLENLLE  116

Query  121  QDFYTSGPNQ  130
            QDF +SGP+ 
Sbjct  117  QDFSASGPKP  126

12) I137_12050 in NC_021984


> AF141323|5|G5|5532450|AAD44734.1|Shigella_flexneri_5a_str._M90T|-|4360..4752|tnpB|-|TnpB
Length=130

 Score =  107 bits (389),  Expect = 4e-25, Method: Compositional matrix adjust.
 Identities = 85/125 (68%), Positives = 104/125 (84%), Gaps = 2/125 (1%)

Query  1    MKYVFIEKHQAEFNIKAMCRVLQIARSGWYVWHqrrhqinqrqrfrLVCDNVVREAFSDA  60
            MKYVFIE+H+AEF+IKAMCRVL++ARSGWYVW +RRHQ++ RQ+FRL CD  V+ AF +A
Sbjct  1    MKYVFIENHRAEFSIKAMCRVLRVARSGWYVWLRRRHQMSLRQQFRLTCDAAVHKAFFEA  60

Query  61   KQRYGAPRLTDELRAQGYR--PPSLrrqgrrakasrrfrPVSYRKHDLPVSENWLKQDFY  118
            KQRYGAPRL+DEL     +  ++SLRRQG RAKASR+F PVSYR H+LPV EN L QDF 
Sbjct  61   KQRYGAPRLADELPEFNIKTIAASLRRQGLRAKASRKFSPVSYRAHGLPVLENLLEQDFS  120

Query  119  TSGPN  123
            +SGP+
Sbjct  121  ASGPK  125

13) Hhal_1292 in NC_008789


> AF141323|5|G5|5532450|AAD44734.1|Shigella_flexneri_5a_str._M90T|-|4360..4752|tnpB|-|TnpB
Length=130

 Score = 89.9 bits (322),  Expect = 7e-20, Method: Compositional matrix adjust.
 Identities = 60/126 (48%), Positives = 85/126 (68%), Gaps = 4/126 (3%)

Query  1    MKYAFIDQQRHEHRIQAMCRVLGVARSGFYAWCRNKaaraareerqqaFDGQVQEAFEDS  60
            MKY FI+++R E  I+AMCRVL VARSG Y W R +   + R++ + + D+ V+ AF ++
Sbjct  1    MKYVFIENHRAEFSIKAMCRVLRVARSGWYVWLRRRHQMSLRQQFRLTCDAAVHKAFFEA  60

Query  61   RQRSGAPRLTRELDGQGVSANRKTVARSMRRQGLRARTSRRFKVTTNSAHSLPVAPNHLA  120
            +QR GAPRL+ EL    +    KT+A S+RRQGLRA++SR+F   +  AH+LPV  N L 
Sbjct  61   KQRYGAPRLADELPEFNI----KTIAASLRRQGLRAKASRKFSPVSYRAHGLPVLENLLE  116

Query  121  QHFEAE  126
            Q+F A 
Sbjct  117  QDFSAS  122

14) CDC7B_2038 in NC_016801


> AF141323|5|G5|5532450|AAD44734.1|Shigella_flexneri_5a_str._M90T|-|4360..4752|tnpB|-|TnpB
Length=130

 Score = 61.8 bits (215),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 40/98 (41%), Positives = 62/98 (64%), Gaps = 5/98 (5%)

Query  1   MAAQKAQFPIALMARLLEVSRAGFYQWFARRLAASDKQTARVRFDRMVRQLFFDYAQTHG  60
           +  ++A+F+I  M R+L V+R+G Y W+ RR   S +Q  R+  D  V++ FF+  Q  G
Sbjct  6   IENHRAEFSIKAMCRVLRVARSGWYVWLRRRHQMSLRQQFRLTCDAAVHKAFFEAKQRYG  65

Query  61  SPRLAAALQRDYGIQVDKKRVAASLKRQGLEAISTRQF  98
           +PRLA  L  ++ I    K +AASL+RQGL A ++R+F
Sbjct  66  APRLADELP-EFNI----KTIAASLRRQGLRAKASRKF  98