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Homologs of hrcV gene of NC_004578_P1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) hrcV
( NP_791229.1 )

type III secretion protein HrcV

NC_004578
(Pseudomonas syringae DC3000)

0.0

100

2) hrcV
( YP_273551.1 )

type III secretion component protein HrcV

NC_005773
(Pseudomonas syringae 1448A)

0.0

3) Psyr_1215
( YP_234307.1 )

Type III secretion protein HrcV

NC_007005
(Pseudomonas syringae B728a)

0.0

4) Pmen_0039
( YP_001185545.1 )

HrcV family type III secretion protein

NC_009439
(Pseudomonas mendocina ymp)

0.0

5) hrpI
( YP_003539962.1 )

type III secretion system protein

NC_013971
(Erwinia amylovora ATCC 49946)

0.0

6) hrcV
( YP_003529892.1 )

type III secretion inner membrane protein HrcV

NC_013961
(Erwinia amylovora CFBP1430)

0.0

7) Ser39006_2913
( YP_008523295.1 )

type III secretion protein, HrcV family

NC_022268
(Serratia sp. ATCC 39006)

0.0

8) PCC21_022840
( YP_006646940.1 )

protein HrcV

NC_018525
(Pectobacterium carotovorum PCC21)

0.0

9) hrpI
( YP_001906469.1 )

Harpin secretion protein HrpI (hrp cluster)

NC_010694
(Erwinia tasmaniensis Et1/99)

0.0

10) hrcV
( YP_005804085.1 )

type III secretion inner membrane protein HrcV

NC_017390
(Erwinia pyrifoliae DSM 12163)

0.0

11) hrpI
( YP_002650068.1 )

hrp/hrc type III secretion system-Hrp/hrc secretion/translocation pathway-harpin secretion protein

NC_012214
(Erwinia pyrifoliae Ep1/96)

0.0

12) hrpI
( YP_005818261.1 )

hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-harpin secretion protein

NC_017445
(Erwinia sp. Ejp617)

0.0

13) PC1_2206
( YP_003017781.1 )

HrcV family type III secretion protein

NC_012917
(Pectobacterium carotovorum PC1)

0.0

14) hrpI
( YP_050180.1 )

type III secretion system protein

NC_004547
(Pectobacterium atrosepticum SCRI1043)

0.0

15) Dd586_1888
( YP_003333452.1 )

type III secretion protein, HrcV family

NC_013592
(Dickeya dadantii Ech586)

0.0

16) D781_3944
( YP_007346319.1 )

type III secretion protein, HrcV family

NC_020064
(Serratia marcescens FGI94)

0.0

17) hrcV
( YP_005210975.1 )

protein HrcV

NC_016830
(Pseudomonas fluorescens F113)

0.0

18) PSEBR_a5388
( YP_004356898.1 )

type III secretion protein, membrane protein

NC_015379
(Pseudomonas brassicacearum NFM421)

0.0

19) Dd1591_1891
( YP_003004220.1 )

HrcV family type III secretion protein

NC_012912
(Dickeya zeae Ech1591)

0.0

20) Marme_1079
( YP_004312190.1 )

HrcV family type III secretion protein

NC_015276
(Marinomonas mediterranea MMB-1)

0.0

21) rscV
( YP_006322225.1 )

type III secretion protein RscV

NC_017911
(Pseudomonas fluorescens A506)

0.0

22) H045_00160
( YP_007395604.1 )

type III secretion protein RscV

NC_020209
(Pseudomonas poae RE*1-1-14)

0.0

23) hrcV
( YP_003883240.1 )

type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV)

NC_014500
(Dickeya dadantii 3937)

0.0

24) H650_14870
( YP_008108774.1 )

hypothetical protein

NC_021500
(Enterobacter sp. R4-368)

3e-145

25) HCH_05101
( YP_436207.1 )

type III secretory pathway subunit EscV

NC_007645
(Hahella chejuensis KCTC 2396)

4e-111

26) NH44784_014751
( YP_008028570.1 )

Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV

NC_021285
(Achromobacter xylosoxidans NH44784-1996)

1e-103

27) hrcV
( YP_003774213.1 )

type III secretion HrcV transmembrane protein

NC_014323
(Herbaspirillum seropedicae SmR1)

3e-102

28) yscV
( YP_005082203.1 )

Low calcium response locus protein D (LcrD)

NC_016642
(Pseudovibrio sp. FO-BEG1)

2e-98

29) bcrD
( YP_006899813.1 )

type III secretion pore protein

NC_018829
(Bordetella bronchiseptica MO149)

2e-96

30) bcrD
( YP_006967908.1 )

type III secretion pore protein

NC_019382
(Bordetella bronchiseptica 253)

6e-96

31) bcrD
( YP_006895356.1 )

type III secretion pore protein

NC_018828
(Bordetella parapertussis Bpp5)

7e-96

32) bcrD
( YP_005590294.1 )

putative type III secretion pore protein

NC_017223
(Bordetella pertussis CS)

7e-96

33) bcrD
( NP_880904.1 )

type III secretion pore protein

NC_002929
(Bordetella pertussis Tohama I)

7e-96

34) bcrD
( YP_006625517.1 )

type III secretion pore protein

NC_018518
(Bordetella pertussis 18323)

8e-96

35) bcrD
( NP_888157.1 )

type III secretion pore protein

NC_002927
(Bordetella bronchiseptica RB50)

2e-95

36) NT01EI_0958
( YP_002932406.1 )

type III secretion protein, HrcV family

NC_012779
(Edwardsiella ictaluri 93-146)

3e-95

37) lcrD
( YP_004677271.1 )

Low calcium response locus protein D

NC_015717
(Hyphomicrobium sp. MC1)

4e-95

38) HCH_03273
( YP_434455.1 )

type III secretory pathway subunit EscV

NC_007645
(Hahella chejuensis KCTC 2396)

2e-92

39) bcrD
( NP_884466.1 )

type III secretion pore protein

NC_002928
(Bordetella parapertussis 12822)

3e-92

40) esaV
( YP_003294934.1 )

type III secretion protein, HrcV family

NC_013508
(Edwardsiella tarda EIB202)

1e-90

41) esaV
( YP_005698433.1 )

protein EsaV

NC_017309
(Edwardsiella tarda FL6-60)

1e-90

42) ETAC_04215
( YP_007628334.1 )

secretion system apparatus protein SsaV

NC_020796
(Edwardsiella tarda C07-087)

1e-90

43) escV
( NP_902272.1 )

secretion system apparatus protein SsaV

NC_005085
(Chromobacterium violaceum ATCC 12472)

1e-89

44) A1122_03810
( YP_005520457.1 )

secretion system apparatus protein SsaV

NC_017168
(Yersinia pestis A1122)

1e-87

45) YPO0266
( YP_002345347.1 )

secretion system apparatus protein SsaV

NC_003143
(Yersinia pestis CO92)

1e-87

46) YPD4_0230
( YP_005503442.1 )

secretion system apparatus protein

NC_017154
(Yersinia pestis D106004)

1e-87

47) YPD8_0235
( YP_005507318.1 )

secretion system apparatus protein

NC_017160
(Yersinia pestis D182038)

1e-87

48) YPC_0742
( YP_005622728.1 )

secretion system apparatus protein

NC_017265
(Yersinia pestis Harbin 35)

1e-87

49) YPZ3_0228
( YP_003566400.1 )

secretion system apparatus protein

NC_014029
(Yersinia pestis Z176003)

1e-87

50) flhA1
( NP_991814.1 )

secretion system apparatus protein SsaV

NC_005810
(Yersinia pestis 91001)

2e-87

51) YPA_4017
( YP_653923.1 )

secretion system apparatus protein SsaV

NC_008150
(Yersinia pestis Antiqua)

2e-87

52) y0525
( NP_667862.1 )

secretion system apparatus protein SsaV

NC_004088
(Yersinia pestis KIM)

2e-87

53) YPDSF_3705
( YP_001165028.1 )

secretion system apparatus protein SsaV

NC_009381
(Yersinia pestis Pestoides F)

2e-87

54) YE105_C0332
( YP_004296533.1 )

Secretion system apparatus protein ssaV

NC_015224
(Yersinia enterocolitica 105.5R(r))

4e-86

55) Y11_35391
( YP_006007038.1 )

type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV)

NC_017564
(Yersinia enterocolitica Y11)

1e-85

• Sequence Alignments

1) hrcV in NC_004578


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score = 1105 bits (4191),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 695/695 (100%), Positives = 695/695 (100%), Gaps = 0/695 (0%)

Query  1    MNQIINFLNMVALSAMRRSEvvgaffviaivfMMITPLPTGLVDVLIAVNICISCLLIML  60
            MNQIINFLNMVALSAMRRSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIML
Sbjct  1    MNQIINFLNMVALSAMRRSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIML  60

Query  61   AMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVG  120
            AMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVG
Sbjct  61   AMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVG  120

Query  121  LVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRS  180
            LVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRS
Sbjct  121  LVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRS  180

Query  181  ELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLT  240
            ELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLT
Sbjct  181  ELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLT  240

Query  241  IGDGLIAQIPALLISVTCGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIAAVAMLG  300
            IGDGLIAQIPALLISVTCGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIAAVAMLG
Sbjct  241  IGDGLIAQIPALLISVTCGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIAAVAMLG  300

Query  301  FAALPGMPTGVFITIAIICGAGGMLQLQRAKPKAEEQGAVAVAPEMNGKEDLRTFSPSRQ  360
            FAALPGMPTGVFITIAIICGAGGMLQLQRAKPKAEEQGAVAVAPEMNGKEDLRTFSPSRQ
Sbjct  301  FAALPGMPTGVFITIAIICGAGGMLQLQRAKPKAEEQGAVAVAPEMNGKEDLRTFSPSRQ  360

Query  361  FVLQFHPGQNSALVDALVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFTVYDVP  420
            FVLQFHPGQNSALVDALVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFTVYDVP
Sbjct  361  FVLQFHPGQNSALVDALVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFTVYDVP  420

Query  421  MLKATFTQTHVAVDVRQFNGEDVPAAISGTTDRQEDQWVWLPAEQGGELATVSSMTLITE  480
            MLKATFTQTHVAVDVRQFNGEDVPAAISGTTDRQEDQWVWLPAEQGGELATVSSMTLITE
Sbjct  421  MLKATFTQTHVAVDVRQFNGEDVPAAISGTTDRQEDQWVWLPAEQGGELATVSSMTLITE  480

Query  481  RMERALQSCGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQRLASECVPL  540
            RMERALQSCGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQRLASECVPL
Sbjct  481  RMERALQSCGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQRLASECVPL  540

Query  541  RAIRVIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADGLQVWLLTPESEGLLRD  600
            RAIRVIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADGLQVWLLTPESEGLLRD
Sbjct  541  RAIRVIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADGLQVWLLTPESEGLLRD  600

Query  601  GLRQTQTETFFALSNDISQMLVQQLHIAFPLRAPEQAVLLVAQDLRSPLRTLLREEFYHV  660
            GLRQTQTETFFALSNDISQMLVQQLHIAFPLRAPEQAVLLVAQDLRSPLRTLLREEFYHV
Sbjct  601  GLRQTQTETFFALSNDISQMLVQQLHIAFPLRAPEQAVLLVAQDLRSPLRTLLREEFYHV  660

Query  661  PVLSFAEISNAAKVRVMGRFDLEDDLEPMDNEHAA  695
            PVLSFAEISNAAKVRVMGRFDLEDDLEPMDNEHAA
Sbjct  661  PVLSFAEISNAAKVRVMGRFDLEDDLEPMDNEHAA  695

2) hrcV in NC_005773


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score = 1069 bits (4051),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 643/695 (93%), Positives = 678/695 (98%), Gaps = 0/695 (0%)

Query  1    MNQVINFLNMIALSAMRRSELVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIML  60
            MNQ+INFLNM+ALSAMRRSE+VGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIML
Sbjct  1    MNQIINFLNMVALSAMRRSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIML  60

Query  61   AMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVG  120
            AMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVG
Sbjct  61   AMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVG  120

Query  121  LVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLITVQEARKRRA  180
            LVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLI+V EAR+RR+
Sbjct  121  LVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRS  180

Query  181  ELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVLQHNMSAGDALQLYTVLT  240
            ELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGV+QH M+AGDALQLYTVLT
Sbjct  181  ELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLT  240

Query  241  IGDGLIAQIPALLISVTCGMIITRVPNTEASAEANIGREIAEQITSQPKAWIIAAVAMLG  300
            IGDGLIAQIPALLISVTCGMIITRVPNTEA+ EANIGREIAEQITSQPKAWIIAAVAMLG
Sbjct  241  IGDGLIAQIPALLISVTCGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIAAVAMLG  300

Query  301  FAALPGMPTGVFITIAIICGAGGMLQLQRARPKPDEQRATAVAPEMNGKEDLRTFSPSRQ  360
            FAALPGMPTGVFITIAIICGAGGMLQLQRA+PK++EQ A AVAPEMNGKEDLRTFSPSRQ
Sbjct  301  FAALPGMPTGVFITIAIICGAGGMLQLQRAKPKAEEQGAVAVAPEMNGKEDLRTFSPSRQ  360

Query  361  FVLQFHPGQDSAQIEALISEIRRRRNRLVVQYGLTLPSFIIEHADHLPPDEFRFTVYDVP  420
            FVLQFHPGQ+SA ++AL+SEIR+RRNRLVVQ+GLTLPSFIIE  DHL PDEFRFTVYDVP
Sbjct  361  FVLQFHPGQNSALVDALVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFTVYDVP  420

Query  421  MLKATFTQSHVAVDARQLGGENLPAAIPGNTDRQEDQWVWLPAEQCGELNPVSAMTLIVE  480
            MLKATFTQ+HVAVD RQ+ GE++PAAI+G TDRQEDQWVWLPAEQ GEL  VS+MTLI E
Sbjct  421  MLKATFTQTHVAVDVRQFNGEDVPAAISGTTDRQEDQWVWLPAEQGGELATVSSMTLITE  480

Query  481  RMERALQSCAPQFIGLQETKAILSWLESEQPELAQEIQRVLTLTRFSAVLQRLASERVPL  540
            RMERALQSC+PQFIGLQETKAIL+WLESEQPELAQE+QRVLTLTRFSAVLQRLASE VPL
Sbjct  481  RMERALQSCGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQRLASECVPL  540

Query  541  RAIRLIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGAEGLQVWLLTPESEGLLRD  600
            RAIR+IAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGA+GLQVWLLTPESEGLLRD
Sbjct  541  RAIRVIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADGLQVWLLTPESEGLLRD  600

Query  601  GLRQTQTETFFALSNEISQMLVQQMNIAFPVRAPEQAVLLVAQDLRSPLRTLLREEFYHV  660
            GLRQTQTETFFALSN+ISQMLVQQ++IAFP+RAPEQAVLLVAQDLRSPLRTLLREEFYHV
Sbjct  601  GLRQTQTETFFALSNDISQMLVQQLHIAFPLRAPEQAVLLVAQDLRSPLRTLLREEFYHV  660

Query  661  PVLSFAEISNAAKVKVMGRFDLEDDLEPIDNEHAA  695
            PVLSFAEISNAAKV+VMGRFDLEDDLEP+DNEHAA
Sbjct  661  PVLSFAEISNAAKVRVMGRFDLEDDLEPMDNEHAA  695

3) Psyr_1215 in NC_007005


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score = 1056 bits (4004),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 631/680 (93%), Positives = 666/680 (98%), Gaps = 0/680 (0%)

Query  1    MNRVINFLNMVALSAMRRSELVGAFFVIAIVFMMITPLPTGLIDVLIAVNICISCLLIML  60
            MN++INFLNMVALSAMRRSE+VGAFFVIAIVFMMITPLPTGL+DVLIAVNICISCLLIML
Sbjct  1    MNQIINFLNMVALSAMRRSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIML  60

Query  61   AMHLPRPLAFSTFPAVLLLTTMFRLALSVSTTRLILLNQDAGHIVEAFGQFVVGGNLAVG  120
            AMHLPRPLAFSTFPAVLLLTTMFRLALS+STTRLILLNQDAGHIVEAFGQFVVGGNLAVG
Sbjct  61   AMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVG  120

Query  121  LVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLITVHEARKRRA  180
            LVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLI+V EAR+RR+
Sbjct  121  LVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRS  180

Query  181  ELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVLQHNMAAGDALQLYTVLT  240
            ELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGV+QH M+AGDALQLYTVLT
Sbjct  181  ELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLT  240

Query  241  IGDGLIAQIPALLISVTSGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIASVAMLG  300
            IGDGLIAQIPALLISVT GMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIA+VAMLG
Sbjct  241  IGDGLIAQIPALLISVTCGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIAAVAMLG  300

Query  301  FAALPGMPTGVFITIAIICGAGGLLQLQRAKPKADEQRTATVAPEMNGKEDLRTFSPSRQ  360
            FAALPGMPTGVFITIAIICGAGG+LQLQRAKPKA+EQ + +VAPEMNGKEDLRTFSPSRQ
Sbjct  301  FAALPGMPTGVFITIAIICGAGGMLQLQRAKPKAEEQGAVAVAPEMNGKEDLRTFSPSRQ  360

Query  361  FVLQFHPGQDSAQIEALVSEIRKRRNRLVVQYGLTLPSFIIEHVDDIAPDEFRFTVYDVP  420
            FVLQFHPGQ+SA ++ALVSEIR+RRNRLVVQ+GLTLPSFIIE VD++ PDEFRFTVYDVP
Sbjct  361  FVLQFHPGQNSALVDALVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFTVYDVP  420

Query  421  MLKATFTQSHVAVEARQLEGENLPAAIPGNTDRQEDQWVWLPAEQSGELNPVSSTTLIIE  480
            MLKATFTQ+HVAV+ RQ++GE++PAAI+G TDRQEDQWVWLPAEQ+GEL  VSS TLI E
Sbjct  421  MLKATFTQTHVAVDVRQFNGEDVPAAISGTTDRQEDQWVWLPAEQGGELATVSSMTLITE  480

Query  481  RMERALQSCAPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQRLASECVPL  540
            RMERALQSC+PQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQRLASECVPL
Sbjct  481  RMERALQSCGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQRLASECVPL  540

Query  541  RAIRVIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGAEGLQVWLLTPESEGLLRD  600
            RAIRVIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGA+GLQVWLLTPESEGLLRD
Sbjct  541  RAIRVIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADGLQVWLLTPESEGLLRD  600

Query  601  GLRQTQTETFFALSNEISQMLVQQLHIAFPVRAPEQAVLLVAQDLRSPLRTLLREEFYHV  660
            GLRQTQTETFFALSN+ISQMLVQQLHIAFP+RAPEQAVLLVAQDLRSPLRTLLREEFYHV
Sbjct  601  GLRQTQTETFFALSNDISQMLVQQLHIAFPLRAPEQAVLLVAQDLRSPLRTLLREEFYHV  660

Query  661  PVLSFAEISNAAKVKVMGRF  680
            PVLSFAEISNAAKV+VMGRF
Sbjct  661  PVLSFAEISNAAKVRVMGRF  680

4) Pmen_0039 in NC_009439


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  840 bits (3180),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 535/700 (77%), Positives = 629/700 (90%), Gaps = 11/700 (1%)

Query  1    MGAVIDFLNGIALAAMRRSEivgafvviaiifMMITPMPTELMDVLIAINICISCLMIML  60
            M  +I+FLN +AL+AMRRSE+VGAF VIAI+FMMITP+PT L+DVLIA+NICISCL+IML
Sbjct  1    MNQIINFLNMVALSAMRRSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIML  60

Query  61   AMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLEQDAGHIVEAFGEFVVGGNLAVG  120
            AMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILL+QDAGHIVEAFG+FVVGGNLAVG
Sbjct  61   AMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVG  120

Query  121  VVIFLILTIVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVSEARNRRA  180
            +VIFLILT+VNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISV EARNRR+
Sbjct  121  LVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRS  180

Query  181  ELNKESQLFGAMDGAMKFVNgdaiasliiiainmiggmaigVAQMGMSAGDALQVYTILT  240
            ELNKESQLFGAMDGAMKFVNGDAIASLII+AINMIGG++IGV Q GM+AGDALQ+YT+LT
Sbjct  181  ELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLT  240

Query  241  IGDGLVSQIPALMISVTAGIVITRVPNEQRQ-QTNIGREIAEQLTSQPKAWIIASVAMLG  299
            IGDGL++QIPAL+ISVT G++ITRVPN +   ++NIGREIAEQ+TSQPKAWIIA+VAMLG
Sbjct  241  IGDGLIAQIPALLISVTCGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIAAVAMLG  300

Query  300  FAALPGMPTLTFiiiaiicgcggllqlqrarTSSAAEDDPEVIPPEMNGQEDLRTFSPSR  359
            FAALPGMPT  F I   I   +G +   +   + A E+++  ++PEMNG+EDLRTFSPSR
Sbjct  301  FAALPGMPTGVF-ITIAIICGAGGMLQLQRAKPKAEEQGAVAVAPEMNGKEDLRTFSPSR  359

Query  360  QFVLQFHPSQDAHQVAALLSEIRQRRNRLVVQYGLTLPSFIIEQSPLLPPDEFRFSVYEV  419
            QFVLQFHP+Q++  V AL+SEIRQRRNRLVVQ+GLTLPSFIIE    L PDEFRF+VY+V
Sbjct  360  QFVLQFHPGQNSALVDALVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFTVYDV  419

Query  420  PLFKATLTQSQLAVPARSLP----PGAVCGSNERQEEDWVWMPADDPMLQNDELEIVSAA  475
            P++KAT+TQ+++AV  R +     P+A+ G+ +RQE++WVW+PA+    Q +EL  VS+ 
Sbjct  420  PMLKATFTQTHVAVDVRQFNGEDVPAAISGTTDRQEDQWVWLPAE----QGGELATVSSM  475

Query  476  TLIVERMERAMQACGPQFIGLQETKAILGWLESEQPELAQEMQRVLPLARFSAILQRLAA  535
            TLI ERMERA+Q+CGPQFIGLQETKAILGWLESEQPELAQEMQRVL L+RFSA+LQRLA+
Sbjct  476  TLITERMERALQSCGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQRLAS  535

Query  536  ECVPLRSVRLIAETLIEHAQHERDVTVLTDYVRIALKSQIYHQYSSAEGLLVWLLTPESE  595
            ECVPLR++R+IAETLIEH QHERD  VLTDYVRIALKSQIYHQY +A+GL VWLLTPESE
Sbjct  536  ECVPLRAIRVIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADGLQVWLLTPESE  595

Query  596  GILRDGLRQTQTETFFALNHETSQLLLQQLHMAFPMRAPEQAVLLVPQDLRSPLRTLLQE  655
            G+LRDGLRQTQTETFFAL+++ SQ+L+QQLH+AFP+RAPEQAVLLV+QDLRSPLRTLL+E
Sbjct  596  GLLRDGLRQTQTETFFALSNDISQMLVQQLHIAFPLRAPEQAVLLVAQDLRSPLRTLLRE  655

Query  656  EFHHVPVLSFAEISSAARIKVMGRFDLEESV-ALDNDYAA  694
            EF HVPVLSFAEIS+AA+++VMGRFDLE+ + ++DN+ AA
Sbjct  656  EFYHVPVLSFAEISNAAKVRVMGRFDLEDDLEPMDNEHAA  695

5) hrpI in NC_013971


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  743 bits (2813),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 443/709 (63%), Positives = 582/709 (83%), Gaps = 15/709 (2%)

Query  1    MSSLFVWLNRLAISAMQRSEVVGAAIVMSIVFMMIIPLPTGLIDVLIALNICISSLLIVL  60
            M+ ++  LN +A+SAM+RSEVVGA +V++IVFMMI PLPTGL+DVLIA+NICIS LLI+L
Sbjct  1    MNQIINFLNMVALSAMRRSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIML  60

Query  61   AMYLPKPLAFSTFPSVLLLTTMFRLALSISTTRQILLQQDAGHIVEAFGNFVVGGNLAVG  120
            AM LP+PLAFSTFP+VLLLTTMFRLALSISTTR ILL+QDAGHIVEAFG+FVVGGNLAVG
Sbjct  61   AMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVG  120

Query  121  LVIFLILTVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIEAHQARQRRE  180
            LVIFLILTVVNFLVITKGSERVAEV+ARFTLDAMPGKQMSIDSDLRA LI   +AR+RR 
Sbjct  121  LVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRS  180

Query  181  NLAKESQLFGAMDGAMKFVKGDAIAGLVIVFINMIGGFAIGVLQNGMEAGAAMHIYSVLT  240
            +L KESQLFGAMDGAMKFV+GDAIA+L+IV INMIGG++IGV+Q+GM AG A+++Y+VLT
Sbjct  181  ELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLT  240

Query  241  IGDGLIAQIPALLISLTAGMIITRVSADGQQVDANIGREIAEQLTSQPKAWIMSAAGMLG  300
            IGDGLIAQIPALLIS+T GMIITRV+     V+ANIGREIAEQ+TSQPKAWI++A +MLG
Sbjct  241  IGDGLIAQIPALLISVTCGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIAAVAMLG  300

Query  301  FALLPGMPTAVFVIISAIALGSGLFQLWRIKQQDSQQQADELHAQQLAPEDNGYQDLRRF  360
            FA LPGMPT+VF+ I+ I  ++G++QL R K +  +Q A       +APE NG +DLR F
Sbjct  301  FAALPGMPTGVFITIAIICGAGGMLQLQRAKPKAEEQGAVA-----VAPEMNGKEDLRTF  355

Query  361  NPTRAYLLQFSQEHLNSEAAESLIQHIRRLRNRLVYHFGFTLPSFDIEFSPALAADEFRF  420
            +P+R ++LQF   + NS   ++L+ +IR+ RNRLV +FG+TLPSF IE+   L +DEFRF
Sbjct  356  SPSRQFVLQFHPGQ-NSALVDALVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFRF  414

Query  421  CVYEIPLVTATFAVEQLAVRTSSIEIHLADGESDGQIQPGQAERDEHHWCWLPPQHPLLQ  480
             VY++P++ ATF+  ++AV     +++  +GE      +G ++R+E++W WLP++    Q
Sbjct  415  TVYDVPMLKATFTQTHVAV-----DVRQFNGEDVPAAISGTTDRQEDQWVWLPAE----Q  465

Query  481  QEDRRCWNAQQLIMLRMEQAIHQSGAQFIGLQESKSILNWLESEQPELAQELQRIMPLSR  540
              +    ++  LI  RME+A++  G+QFIGLQE+K+IL WLESEQPELAQE+QR++ L+R
Sbjct  466  GGELATVSSMTLITERMERALQSCGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTR  525

Query  541  FAAVLQRLASERIPLRSVRTIAETLIEHGQHERDSAALTDFVRIALKEHICHQYQQPNGL  600
            F+AVLQRLASE +PLR++R IAETLIEH QHERD+  LTD+VRIALK +I HQY  ++GL
Sbjct  526  FSAVLQRLASECVPLRAIRVIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADGL  585

Query  601  NVWLLTPETEELLRDSLRQAQSETFFSLAQEYGINLLNQMRSAFPPYDNHHALILVAQDL  660
            +VWLLTPE+E LLRD+LRQ+Q+ETFF+L+++ +  L++Q++ AFP    ++A++LVAQDL
Sbjct  586  QVWLLTPESEGLLRDGLRQTQTETFFALSNDISQMLVQQLHIAFPLRAPEQAVLLVAQDL  645

Query  661  RSPLRALLKDEFHAVPVLSFAELTSNVAINVLGRLDLQQSPPELQENDP  709
            RSPLR+LL++EF  VPVLSFAE+++   + V+GR+DL++    ++++++
Sbjct  646  RSPLRTLLREEFYHVPVLSFAEISNAAKVRVMGRFDLEDDLEPMDNEHA  694

6) hrcV in NC_013961


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  743 bits (2813),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 443/709 (63%), Positives = 582/709 (83%), Gaps = 15/709 (2%)

Query  1    MSSLFVWLNRLAISAMQRSEVVGAAIVMSIVFMMIIPLPTGLIDVLIALNICISSLLIVL  60
            M+ ++  LN +A+SAM+RSEVVGA +V++IVFMMI PLPTGL+DVLIA+NICIS LLI+L
Sbjct  1    MNQIINFLNMVALSAMRRSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIML  60

Query  61   AMYLPKPLAFSTFPSVLLLTTMFRLALSISTTRQILLQQDAGHIVEAFGNFVVGGNLAVG  120
            AM LP+PLAFSTFP+VLLLTTMFRLALSISTTR ILL+QDAGHIVEAFG+FVVGGNLAVG
Sbjct  61   AMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVG  120

Query  121  LVIFLILTVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIEAHQARQRRE  180
            LVIFLILTVVNFLVITKGSERVAEV+ARFTLDAMPGKQMSIDSDLRA LI   +AR+RR 
Sbjct  121  LVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRS  180

Query  181  NLAKESQLFGAMDGAMKFVKGDAIAGLVIVFINMIGGFAIGVLQNGMEAGAAMHIYSVLT  240
            +L KESQLFGAMDGAMKFV+GDAIA+L+IV INMIGG++IGV+Q+GM AG A+++Y+VLT
Sbjct  181  ELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLT  240

Query  241  IGDGLIAQIPALLISLTAGMIITRVSADGQQVDANIGREIAEQLTSQPKAWIMSAAGMLG  300
            IGDGLIAQIPALLIS+T GMIITRV+     V+ANIGREIAEQ+TSQPKAWI++A +MLG
Sbjct  241  IGDGLIAQIPALLISVTCGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIAAVAMLG  300

Query  301  FALLPGMPTAVFVIISAIALGSGLFQLWRIKQQDSQQQADELHAQQLAPEDNGYQDLRRF  360
            FA LPGMPT+VF+ I+ I  ++G++QL R K +  +Q A       +APE NG +DLR F
Sbjct  301  FAALPGMPTGVFITIAIICGAGGMLQLQRAKPKAEEQGAVA-----VAPEMNGKEDLRTF  355

Query  361  NPTRAYLLQFSQEHLNSEAAESLIQHIRRLRNRLVYHFGFTLPSFDIEFSPALAADEFRF  420
            +P+R ++LQF   + NS   ++L+ +IR+ RNRLV +FG+TLPSF IE+   L +DEFRF
Sbjct  356  SPSRQFVLQFHPGQ-NSALVDALVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFRF  414

Query  421  CVYEIPLVTATFAVEQLAVRTSSIEIHLADGESDGQIQPGQAERDEHHWCWLPPQHPLLQ  480
             VY++P++ ATF+  ++AV     +++  +GE      +G ++R+E++W WLP++    Q
Sbjct  415  TVYDVPMLKATFTQTHVAV-----DVRQFNGEDVPAAISGTTDRQEDQWVWLPAE----Q  465

Query  481  QEDRRCWNAQQLIMLRMEQAIHQSGAQFIGLQESKSILNWLESEQPELAQELQRIMPLSR  540
              +    ++  LI  RME+A++  G+QFIGLQE+K+IL WLESEQPELAQE+QR++ L+R
Sbjct  466  GGELATVSSMTLITERMERALQSCGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTR  525

Query  541  FAAVLQRLASERIPLRSVRTIAETLIEHGQHERDSAALTDFVRIALKEHICHQYQQPNGL  600
            F+AVLQRLASE +PLR++R IAETLIEH QHERD+  LTD+VRIALK +I HQY  ++GL
Sbjct  526  FSAVLQRLASECVPLRAIRVIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADGL  585

Query  601  NVWLLTPETEELLRDSLRQAQSETFFSLAQEYGINLLNQMRSAFPPYDNHHALILVAQDL  660
            +VWLLTPE+E LLRD+LRQ+Q+ETFF+L+++ +  L++Q++ AFP    ++A++LVAQDL
Sbjct  586  QVWLLTPESEGLLRDGLRQTQTETFFALSNDISQMLVQQLHIAFPLRAPEQAVLLVAQDL  645

Query  661  RSPLRALLKDEFHAVPVLSFAELTSNVAINVLGRLDLQQSPPELQENDP  709
            RSPLR+LL++EF  VPVLSFAE+++   + V+GR+DL++    ++++++
Sbjct  646  RSPLRTLLREEFYHVPVLSFAEISNAAKVRVMGRFDLEDDLEPMDNEHA  694

7) Ser39006_2913 in NC_022268


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  739 bits (2795),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 447/698 (65%), Positives = 579/698 (83%), Gaps = 10/698 (1%)

Query  1    MSLLISWLNRIAISAMQRSEIVGAvivmsivfmmiiPLPTGLIDVLIALNICMSSLLIVL  60
            M+ +I+ LN +A+SAM+RSE+VGA +V++IVFMMI PLPTGL+DVLIA+NIC+S LLI+L
Sbjct  1    MNQIINFLNMVALSAMRRSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIML  60

Query  61   AMYLPKPLAFSTFPAVLLLTTMFRLALSISTTRQILLQQDAGHVVEAFGNFVVGGNLTVG  120
            AM LP+PLAFSTFPAVLLLTTMFRLALSISTTR ILL+QDAGH+VEAFG+FVVGGNL+VG
Sbjct  61   AMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVG  120

Query  121  LVIFLILTVVNFMVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIETHQARQRRE  180
            LVIFLILTVVNF+VITKGSERVAEV+ARFTLDAMPGKQMSIDSDLRA LI   +AR+RR 
Sbjct  121  LVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRS  180

Query  181  NLAKESQLFGAMDGAMKFVKGDAIASLVIVFINMLGGFAIGVLQNGMTAGDAMHIYSVLT  240
            +L KESQLFGAMDGAMKFV+GDAIASL+IV INM+GG++IGV+Q+GMTAGDA+++Y+VLT
Sbjct  181  ELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLT  240

Query  241  IGDGLIAQIPALLISLTAGMIITRVSADGQKVDNNIGREIAEQLTSQPKAWIISSIGMFG  300
            IGDGLIAQIPALLIS+T GMIITRV+     V+ NIGREIAEQ+TSQPKAWII++++M+G
Sbjct  241  IGDGLIAQIPALLISVTCGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIAAVAMLG  300

Query  301  FALLPGMPTIVFAVISLISLGSGLFQLWRIKQSGLQADSLLAADNLPAEQNGYQDLRRFN  360
            FA LPGMPT VF  I++I  ++G++QL R K  + + +++     +++E NG +DLR F+
Sbjct  301  FAALPGMPTGVFITIAIICGAGGMLQLQRAKPKAEEQGAV----AVAPEMNGKEDLRTFS  356

Query  361  PTRAYLLQFNPVFQHAQAAALLVQEIRRLRNRLVYHFGFTLPSFDIEFNPTVPEDEFQFC  420
            P+R ++LQF+P  Q++     LV EIR+ RNRLV +FG+TLPSF IE+   +  DEF+F 
Sbjct  357  PSRQFVLQFHPG-QNSALVDALVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFT  415

Query  421  VYEIPLLRATFGSRHVAVEKRLIPEEQQDDTMHPGINARDEHHWLWLAPEHDLLRQDPLP  480
            VY++P+L+ATF   HVAV+ R +  E+   ++ +G   R+E++W+WL++E++    + L+
Sbjct  416  VYDVPMLKATFTQTHVAVDVRQFNGEDVPAAI-SGTTDRQEDQWVWLPAEQG----GELA  470

Query  481  HWDTESLILKRMENAIHRSGSQFIGLQETKSILAWLEGEQPELAQELQRIMPLSRFASVL  540
               + +LI  RME A++  G+QFIGLQETK+IL+WLE+EQPELAQE+QR++ L+RF++VL
Sbjct  471  TVSSMTLITERMERALQSCGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRFSAVL  530

Query  541  QRLASERVPLRSVRPIAEALIEIGQHERDTNALADYVRLELKSQICHQYSQDDNLFVWLL  600
            QRLASE VPLR++R IAE+LIE  QHERDTN L+DYVR+ LKSQI HQY   D L VWLL
Sbjct  531  QRLASECVPLRAIRVIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADGLQVWLL  590

Query  601  TPETEELLRDALRQTQNETFFALAQEYAATLLMQLRQAFPPMAPLSAVILVAQDLRSPLR  660
            TPE+E LLRD+LRQTQ ETFFAL+++ +  L+ QL+ AFP  AP  AV+LVAQDLRSPLR
Sbjct  591  TPESEGLLRDGLRQTQTETFFALSNDISQMLVQQLHIAFPLRAPEQAVLLVAQDLRSPLR  650

Query  661  ALLQDEFHHVPVLSFTELESHLSINVIGRIDLQETVEP  698
            +LL++EF HVPVLSF+E+ +   + V+GR+DL++ +EP
Sbjct  651  TLLREEFYHVPVLSFAEISNAAKVRVMGRFDLEDDLEP  688

8) PCC21_022840 in NC_018525


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  738 bits (2791),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 452/697 (65%), Positives = 580/697 (84%), Gaps = 9/697 (1%)

Query  1    MNLLIIWLNRIALSAMQRSEVVGAvivmsivfmmiiPLPTGLIDVLIALNICVSSLLIVL  60
            MN +I  LN +ALSAM+RSEVVGA +V++IVFMMI PLPTGL+DVLIA+NIC+S LLI+L
Sbjct  1    MNQIINFLNMVALSAMRRSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIML  60

Query  61   AMYLPKPLAFSTFPAVLLLTTMFRLAISISTTRQILLQQDGGHIVEAFGNYVVGGNLAVG  120
            AM LP+PLAFSTFPAVLLLTTMFRLA+SISTTR ILL+QD+GHIVEAFG++VVGGNLAVG
Sbjct  61   AMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVG  120

Query  121  LVIFLILTVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIEAHQARQRRE  180
            LVIFLILTVVNFLVITKGSERVAEV+ARFTLDAMPGKQMSIDSDLRA LI   +AR+RR 
Sbjct  121  LVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRS  180

Query  181  NLAKESQLFGAMDGAMKFVKGDAIASLVIVFINMIGGFAIGVLQHNMAASDAMHVYSVLT  240
            +L KESQLFGAMDGAMKFV+GDAIASL+IV INMIGG++IGV+QH M+A+DA+++Y+VLT
Sbjct  181  ELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLT  240

Query  241  IGDGLIAQIPALLISLTAGMIITRVSADGQKVDANIGREIAEQLTSQPKAWIISSIGMFG  300
            IGDGLIAQIPALLIS+T GMIITRV+     V+ANIGREIAEQ+TSQPKAWII++++M+G
Sbjct  241  IGDGLIAQIPALLISVTCGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIAAVAMLG  300

Query  301  FALLPGMPTLVFVTISLASLGSGLFQLWRIKQQGQLDASQSEADNIPAEQNGYQDLRRFN  360
            FA LPGMPT VF+TI++   ++G++QL R K +++    +  A  +++E NG +DLR F+
Sbjct  301  FAALPGMPTGVFITIAIICGAGGMLQLQRAKPKAE----EQGAVAVAPEMNGKEDLRTFS  356

Query  361  PTRAYLLLFHPVWQEQPTATALVQNIRRLRNKLVYRFGFTLPSFDIEFSDRLAEDEFQFC  420
            P+R ++L FHP  Q+ +   ALV +IR+ RN+LV +FG+TLPSF IE+ D+L  DEF+F 
Sbjct  357  PSRQFVLQFHPG-QNSALVDALVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFT  415

Query  421  VYEIPYVKATFVTDRLAIASGAIEPTDANLATPGPTLRDESHWLWLPLAQVAQQPDDVPR  480
            VY++P +KATF   ++A+    ++  D   A +G T R+E +W+WLP    A+Q ++++ 
Sbjct  416  VYDVPMLKATFTQTHVAVDVRQFNGEDVPAAISGTTDRQEDQWVWLP----AEQGGELAT  471

Query  481  WSADELILARMEQAIHRTGSQFIGLQETKSILAWLESEQPELAQELQRIMPLSRFASVLQ  540
             S+  LI  RME+A++  G+QFIGLQETK+IL+WLESEQPELAQE+QR++ L+RF++VLQ
Sbjct  472  VSSMTLITERMERALQSCGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQ  531

Query  541  RLASERVPLRSVRPIAEALIEVGQHERDTLALTDYVRLALKSQICHQYSDENNLAVWLLT  600
            RLASE VPLR++R IAE+LIE  QHERDT  LTDYVR+ALKSQI HQY + + L VWLLT
Sbjct  532  RLASECVPLRAIRVIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADGLQVWLLT  591

Query  601  PESEELLRDALRQTQNETFFALTQDYASTLLGQLRQAFPPLSSQRSLVLVAQDLRSPLRT  660
            PESE LLRD+LRQTQ ETFFAL++D +  L+ QL+ AFP  +++++++LVAQDLRSPLRT
Sbjct  592  PESEGLLRDGLRQTQTETFFALSNDISQMLVQQLHIAFPLRAPEQAVLLVAQDLRSPLRT  651

Query  661  LLQDEFHHVPVLSFTELESTLSINVIGRLDLYDSPDP  697
            LL++EF HVPVLSF+E+ ++  + V+GR+DL D  +P
Sbjct  652  LLREEFYHVPVLSFAEISNAAKVRVMGRFDLEDDLEP  688

9) hrpI in NC_010694


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  737 bits (2789),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 442/700 (64%), Positives = 581/700 (83%), Gaps = 15/700 (2%)

Query  1    MSALFVWLNRLAISAMQRSEVVGAAIVMSIVFMMIIPLPTGLIDVLIALNICISSLLIVL  60
            M+ ++  LN +A+SAM+RSEVVGA +V++IVFMMI PLPTGL+DVLIA+NICIS LLI+L
Sbjct  1    MNQIINFLNMVALSAMRRSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIML  60

Query  61   AMYLPKPLAFSTFPSVLLLTTMFRLALSISTTRQILLQQDAGHIVEAFGNFVVGGNLAVG  120
            AM LP+PLAFSTFP+VLLLTTMFRLALSISTTR ILL+QDAGHIVEAFG+FVVGGNLAVG
Sbjct  61   AMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVG  120

Query  121  LVIFLILTVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLLEAHQARQRRE  180
            LVIFLILTVVNFLVITKGSERVAEV+ARFTLDAMPGKQMSIDSDLRA L+   +AR+RR 
Sbjct  121  LVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRS  180

Query  181  NLAKESQLFGAMDGAMKFVKGDAIAGLVIVFINMIGGFAIGVLQNGMEPGAAMHIYSVLT  240
            +L KESQLFGAMDGAMKFV+GDAIA+L+IV INMIGG++IGV+Q+GM +G A+++Y+VLT
Sbjct  181  ELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLT  240

Query  241  IGDGLIAQIPALLISLTAGMIITRVSADGQQVDANIGREIAEQLTSQPKAWIMSAAGMLG  300
            IGDGLIAQIPALLIS+T GMIITRV+     V+ANIGREIAEQ+TSQPKAWI++A +MLG
Sbjct  241  IGDGLIAQIPALLISVTCGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIAAVAMLG  300

Query  301  FALLPGMPTAVFIIISAIALGSGLFQLWRTRqqdnqqqadqlqaqqlaPEDNGHQDLRRF  360
            FA LPGMPT+VFI I+ I  ++G++QL R++      +A++  A  +APE NG +DLR F
Sbjct  301  FAALPGMPTGVFITIAIICGAGGMLQLQRAK-----PKAEEQGAVAVAPEMNGKEDLRTF  355

Query  361  NPTRAYLLQFSPAHSNSAAAESLIQHIRRLRNRLVYHFGFTLPSFDIEFSPALDDGEFRF  420
            +P+R ++LQF P++ NSA  ++L+ +IR+ RNRLV +FG+TLPSF IE+   L+ +EFRF
Sbjct  356  SPSRQFVLQFHPGQ-NSALVDALVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFRF  414

Query  421  CVYEIPLVTATFAVDRLAVRKSSIELHAADGDSDGPIQPGQAERDEHHWCWLPPQHPWLQ  480
             VY++P++ ATF+  ++AV     +++  +G+   +  +G ++R+E++W WLP++    Q
Sbjct  415  TVYDVPMLKATFTQTHVAV-----DVRQFNGEDVPAAISGTTDRQEDQWVWLPAE----Q  465

Query  481  QEDRRYWNAEQLIMLRMEQAIHQSGAQFIGLQESKSILNWLESEQPELAQELQRIMPLSR  540
              +    ++  LI  RME+A++  G+QFIGLQE+K+IL WLESEQPELAQE+QR++ L+R
Sbjct  466  GGELATVSSMTLITERMERALQSCGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTR  525

Query  541  FAAVLQRLASERIPLRSVRTIAETLIEHGQHERDSAALTDFVRIALKEHICHQYQQPNGL  600
            F+AVLQRLASE +PLR++R IAETLIEH QHERD+  LTD+VRIALK +I HQY  ++GL
Sbjct  526  FSAVLQRLASECVPLRAIRVIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADGL  585

Query  601  DAWLLTPETEELLRDSLRQAQSETFFSLAQEYGVNLLNQLRSAFPPYDNHQALILVAQDL  660
            + WLLTPE+E LLRD+LRQ+Q+ETFF+L+++ +  L++QL+ AFP    +QA++LVAQDL
Sbjct  586  QVWLLTPESEGLLRDGLRQTQTETFFALSNDISQMLVQQLHIAFPLRAPEQAVLLVAQDL  645

Query  661  RSPLRALLKDEFHAVPVLSFAELTSNVAINVLGRLDLHQS  700
            RSPLR+LL++EF  VPVLSFAE+++   + V+GR+DL++ 
Sbjct  646  RSPLRTLLREEFYHVPVLSFAEISNAAKVRVMGRFDLEDD  685

10) hrpI in NC_017445


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  737 bits (2788),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 444/709 (63%), Positives = 581/709 (82%), Gaps = 15/709 (2%)

Query  1    MSSLFVWLNRLAISAMQRSEVVGAAIVMSIVFMMIIPLPTGLIDVLIALNICISSLLIVL  60
            M+ ++  LN +A+SAM+RSEVVGA +V++IVFMMI PLPTGL+DVLIA+NICIS LLI+L
Sbjct  1    MNQIINFLNMVALSAMRRSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIML  60

Query  61   AMYLPKPLAFSTFPSVLLLTTMFRLALSISTTRQILLQQDAGHIVEAFGNFVVGGNLAVG  120
            AM LP+PLAFSTFP+VLLLTTMFRLALSISTTR ILL+QDAGHIVEAFG+FVVGGNLAVG
Sbjct  61   AMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVG  120

Query  121  LVIFLILTVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIEAHQARQRRE  180
            LVIFLILTVVNFLVITKGSERVAEV+ARFTLDAMPGKQMSIDSDLRA LI   +AR+RR 
Sbjct  121  LVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRS  180

Query  181  NLAKESQLFGAMDGAMKFVKGDAIAGLVIVFINMIGGFAIGVLQNGMEAGAAMHIYSVLT  240
            +L KESQLFGAMDGAMKFV+GDAIA+L+IV INMIGG++IGV+Q+GM AG A+++Y+VLT
Sbjct  181  ELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLT  240

Query  241  IGDGLIAQIPALLISLTAGMIITRVSADGQQVDANIGREIAEQLTSQPKAWIMSAAGMLG  300
            IGDGLIAQIPALLIS+T GMIITRV+     V+ANIGREIAEQ+TSQPKAWI++A +MLG
Sbjct  241  IGDGLIAQIPALLISVTCGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIAAVAMLG  300

Query  301  FALLPGMPTAVFVIISAIALGSGLFQLWRIKqqdnqqqadelqaqqlaPEDNGHQDLRRF  360
            FA LPGMPT+VF+ I+ I  ++G++QL R K      +A+E  A  +APE NG +DLR F
Sbjct  301  FAALPGMPTGVFITIAIICGAGGMLQLQRAK-----PKAEEQGAVAVAPEMNGKEDLRTF  355

Query  361  NPTRAYLLQFSQAHLNSEAAESLIQHIRRLRNRLVYHFGFTLPSFDIEFSPTLAADEFRF  420
            +P+R ++LQF  ++ NS   ++L+ +IR+ RNRLV +FG+TLPSF IE+   L +DEFRF
Sbjct  356  SPSRQFVLQFHPGQ-NSALVDALVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFRF  414

Query  421  CVYEIPLVTATFDVGQLAVRTSSIEMHLADGDSDGQIQPGQAERDEHHWCWLPPQHPLLQ  480
             VY++P++ ATF   ++AV     +++  +G+      +G ++R+E++W WLP++    Q
Sbjct  415  TVYDVPMLKATFTQTHVAV-----DVRQFNGEDVPAAISGTTDRQEDQWVWLPAE----Q  465

Query  481  QEDRHYWNAQQLIMLRMEQAIHQSGSQFIGLQESKSILNWLESEQPELAQELQRIMPLSR  540
              +    ++  LI  RME+A++  G+QFIGLQE+K+IL WLESEQPELAQE+QR++ L+R
Sbjct  466  GGELATVSSMTLITERMERALQSCGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTR  525

Query  541  FAAVLQRLASERIPLRSVRTIAETLIEHGQHERDSAALTDFVRIALKEHICHQYQQPNGL  600
            F+AVLQRLASE +PLR++R IAETLIEH QHERD+  LTD+VRIALK +I HQY  ++GL
Sbjct  526  FSAVLQRLASECVPLRAIRVIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADGL  585

Query  601  NVWLLTPETEELLRDSLRQAQSETFFSLAQDYGINLLNQMRSAFPPYDNSPALILVAQDL  660
            +VWLLTPE+E LLRD+LRQ+Q+ETFF+L++D +  L++Q++ AFP      A++LVAQDL
Sbjct  586  QVWLLTPESEGLLRDGLRQTQTETFFALSNDISQMLVQQLHIAFPLRAPEQAVLLVAQDL  645

Query  661  RSPLRALLKDEFHAVPVLSFAELTSNVAINVLGRLDLQQSPPDLQENDP  709
            RSPLR+LL++EF  VPVLSFAE+++   + V+GR+DL++    ++++++
Sbjct  646  RSPLRTLLREEFYHVPVLSFAEISNAAKVRVMGRFDLEDDLEPMDNEHA  694

11) hrcV in NC_017390


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  737 bits (2787),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 444/709 (63%), Positives = 580/709 (82%), Gaps = 15/709 (2%)

Query  1    MSSLFVWLNRLAISAMQRSEVVGAAIVMSIVFMMIIPLPTGLIDVLIALNICISSLLIVL  60
            M+ ++  LN +A+SAM+RSEVVGA +V++IVFMMI PLPTGL+DVLIA+NICIS LLI+L
Sbjct  1    MNQIINFLNMVALSAMRRSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIML  60

Query  61   AMYLPKPLAFSTFPSVLLLTTMFRLALSISTTRQILLQQDAGHIVEAFGNFVVGGNLAVG  120
            AM LP+PLAFSTFP+VLLLTTMFRLALSISTTR ILL+QDAGHIVEAFG+FVVGGNLAVG
Sbjct  61   AMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVG  120

Query  121  LVIFLILTVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIEAHQARQRRE  180
            LVIFLILTVVNFLVITKGSERVAEV+ARFTLDAMPGKQMSIDSDLRA LI   +AR+RR 
Sbjct  121  LVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRS  180

Query  181  NLAKESQLFGAMDGAMKFVKGDAIAGLVIVFINMIGGFAIGVLQNGMEAGAAMHIYSVLT  240
            +L KESQLFGAMDGAMKFV+GDAIA+L+IV INMIGG++IGV+Q+GM AG A+++Y+VLT
Sbjct  181  ELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLT  240

Query  241  IGDGLIAQIPALLISLTAGMIITRVSADGQQVDANIGREIAEQLTSQPKAWIMSAAGMLG  300
            IGDGLIAQIPALLIS+T GMIITRV+     V+ANIGREIAEQ+TSQPKAWI++A +MLG
Sbjct  241  IGDGLIAQIPALLISVTCGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIAAVAMLG  300

Query  301  FALLPGMPTTVFVIISAIALGSGLFQLWRIKqqdnqqqadelqaqqlaPEDNGHQDLRRF  360
            FA LPGMPT VF+ I+ I  ++G++QL R K      +A+E  A  +APE NG +DLR F
Sbjct  301  FAALPGMPTGVFITIAIICGAGGMLQLQRAK-----PKAEEQGAVAVAPEMNGKEDLRTF  355

Query  361  NPTRAYLLQFSQAHLNSEAAESLIQHIRRLRNRLVYHFGFTLPSFDIEFSPTLAADEFRF  420
            +P+R ++LQF  ++ NS   ++L+ +IR+ RNRLV +FG+TLPSF IE+   L +DEFRF
Sbjct  356  SPSRQFVLQFHPGQ-NSALVDALVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFRF  414

Query  421  CVYEIPLVTATFDVGQLAVRTSSIEMHLADGDSDGQIQPGQAERDEHHWCWLPPQHPLLQ  480
             VY++P++ ATF   ++AV     +++  +G+      +G ++R+E++W WLP++    Q
Sbjct  415  TVYDVPMLKATFTQTHVAV-----DVRQFNGEDVPAAISGTTDRQEDQWVWLPAE----Q  465

Query  481  QEDRHYWNAQQLIMLRMEQAIHQSGSQFIGLQESKSILNWLESEQPELAQELQRIMPLSR  540
              +    ++  LI  RME+A++  G+QFIGLQE+K+IL WLESEQPELAQE+QR++ L+R
Sbjct  466  GGELATVSSMTLITERMERALQSCGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTR  525

Query  541  FAAVLQRLASERIPLRSVRTIAETLIEHGQHERDSAALTDFVRIALKEHICHQYQQPNGL  600
            F+AVLQRLASE +PLR++R IAETLIEH QHERD+  LTD+VRIALK +I HQY  ++GL
Sbjct  526  FSAVLQRLASECVPLRAIRVIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADGL  585

Query  601  NVWLLTPETEELLRDSLRQAQSETFFSLAQDYGINLLNQMRSAFPPYDNSPALILVAQDL  660
            +VWLLTPE+E LLRD+LRQ+Q+ETFF+L++D +  L++Q++ AFP      A++LVAQDL
Sbjct  586  QVWLLTPESEGLLRDGLRQTQTETFFALSNDISQMLVQQLHIAFPLRAPEQAVLLVAQDL  645

Query  661  RSPLRALLKDEFHAVPVLSFAELTSNVAINVLGRLDLQQSPPDLQENDP  709
            RSPLR+LL++EF  VPVLSFAE+++   + V+GR+DL++    ++++++
Sbjct  646  RSPLRTLLREEFYHVPVLSFAEISNAAKVRVMGRFDLEDDLEPMDNEHA  694

12) hrpI in NC_012214


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  737 bits (2787),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 444/709 (63%), Positives = 580/709 (82%), Gaps = 15/709 (2%)

Query  1    MSSLFVWLNRLAISAMQRSEVVGAAIVMSIVFMMIIPLPTGLIDVLIALNICISSLLIVL  60
            M+ ++  LN +A+SAM+RSEVVGA +V++IVFMMI PLPTGL+DVLIA+NICIS LLI+L
Sbjct  1    MNQIINFLNMVALSAMRRSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIML  60

Query  61   AMYLPKPLAFSTFPSVLLLTTMFRLALSISTTRQILLQQDAGHIVEAFGNFVVGGNLAVG  120
            AM LP+PLAFSTFP+VLLLTTMFRLALSISTTR ILL+QDAGHIVEAFG+FVVGGNLAVG
Sbjct  61   AMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVG  120

Query  121  LVIFLILTVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIEAHQARQRRE  180
            LVIFLILTVVNFLVITKGSERVAEV+ARFTLDAMPGKQMSIDSDLRA LI   +AR+RR 
Sbjct  121  LVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRS  180

Query  181  NLAKESQLFGAMDGAMKFVKGDAIAGLVIVFINMIGGFAIGVLQNGMEAGAAMHIYSVLT  240
            +L KESQLFGAMDGAMKFV+GDAIA+L+IV INMIGG++IGV+Q+GM AG A+++Y+VLT
Sbjct  181  ELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLT  240

Query  241  IGDGLIAQIPALLISLTAGMIITRVSADGQQVDANIGREIAEQLTSQPKAWIMSAAGMLG  300
            IGDGLIAQIPALLIS+T GMIITRV+     V+ANIGREIAEQ+TSQPKAWI++A +MLG
Sbjct  241  IGDGLIAQIPALLISVTCGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIAAVAMLG  300

Query  301  FALLPGMPTTVFVIISAIALGSGLFQLWRIKqqdnqqqadelqaqqlaPEDNGHQDLRRF  360
            FA LPGMPT VF+ I+ I  ++G++QL R K      +A+E  A  +APE NG +DLR F
Sbjct  301  FAALPGMPTGVFITIAIICGAGGMLQLQRAK-----PKAEEQGAVAVAPEMNGKEDLRTF  355

Query  361  NPTRAYLLQFSQAHLNSEAAESLIQHIRRLRNRLVYHFGFTLPSFDIEFSPTLAADEFRF  420
            +P+R ++LQF  ++ NS   ++L+ +IR+ RNRLV +FG+TLPSF IE+   L +DEFRF
Sbjct  356  SPSRQFVLQFHPGQ-NSALVDALVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFRF  414

Query  421  CVYEIPLVTATFDVGQLAVRTSSIEMHLADGDSDGQIQPGQAERDEHHWCWLPPQHPLLQ  480
             VY++P++ ATF   ++AV     +++  +G+      +G ++R+E++W WLP++    Q
Sbjct  415  TVYDVPMLKATFTQTHVAV-----DVRQFNGEDVPAAISGTTDRQEDQWVWLPAE----Q  465

Query  481  QEDRHYWNAQQLIMLRMEQAIHQSGSQFIGLQESKSILNWLESEQPELAQELQRIMPLSR  540
              +    ++  LI  RME+A++  G+QFIGLQE+K+IL WLESEQPELAQE+QR++ L+R
Sbjct  466  GGELATVSSMTLITERMERALQSCGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTR  525

Query  541  FAAVLQRLASERIPLRSVRTIAETLIEHGQHERDSAALTDFVRIALKEHICHQYQQPNGL  600
            F+AVLQRLASE +PLR++R IAETLIEH QHERD+  LTD+VRIALK +I HQY  ++GL
Sbjct  526  FSAVLQRLASECVPLRAIRVIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADGL  585

Query  601  NVWLLTPETEELLRDSLRQAQSETFFSLAQDYGINLLNQMRSAFPPYDNSPALILVAQDL  660
            +VWLLTPE+E LLRD+LRQ+Q+ETFF+L++D +  L++Q++ AFP      A++LVAQDL
Sbjct  586  QVWLLTPESEGLLRDGLRQTQTETFFALSNDISQMLVQQLHIAFPLRAPEQAVLLVAQDL  645

Query  661  RSPLRALLKDEFHAVPVLSFAELTSNVAINVLGRLDLQQSPPDLQENDP  709
            RSPLR+LL++EF  VPVLSFAE+++   + V+GR+DL++    ++++++
Sbjct  646  RSPLRTLLREEFYHVPVLSFAEISNAAKVRVMGRFDLEDDLEPMDNEHA  694

13) PC1_2206 in NC_012917


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  734 bits (2775),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 450/697 (65%), Positives = 577/697 (83%), Gaps = 9/697 (1%)

Query  1    MNLLITWLNRIALSAMQRSEVVGAvivmsivfmmiiPLPTELIDVLIALNICASSLLIVL  60
            MN +I  LN +ALSAM+RSEVVGA +V++IVFMMI PLPT L+DVLIA+NIC S LLI+L
Sbjct  1    MNQIINFLNMVALSAMRRSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIML  60

Query  61   AMYLPKPLAFSTFPAVLLLTTMFRLAISISTTRQILLQQDGGHIVEAFGNYVVGGNLAVG  120
            AM LP+PLAFSTFPAVLLLTTMFRLA+SISTTR ILL+QD+GHIVEAFG++VVGGNLAVG
Sbjct  61   AMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVG  120

Query  121  LVIFLILTVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIEAHQARQRRE  180
            LVIFLILTVVNFLVITKGSERVAEV+ARFTLDAMPGKQMSIDSDLRA LI   +AR+RR 
Sbjct  121  LVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRS  180

Query  181  NLAKESQLFGAMDGAMKFVKGDAIASLVIVFINMIGGFAIGVLQHNMAASDAMHVYSVLT  240
            +L KESQLFGAMDGAMKFV+GDAIASL+IV INMIGG++IGV+QH M+A+DA+++Y+VLT
Sbjct  181  ELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLT  240

Query  241  IGDGLIAQIPALLISLTAGMIITRVSADGQKVDANIGREIAEQLTSQPKAWIISSIGMFG  300
            IGDGLIAQIPALLIS+T GMIITRV+     V+ANIGREIAEQ+TSQPKAWII++++M+G
Sbjct  241  IGDGLIAQIPALLISVTCGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIAAVAMLG  300

Query  301  FALLPGMPTLVFVAISLASLGSGLFQLWRIKQQGQLDASQSEADNMPAEQNGYQDLRRFN  360
            FA LPGMPT VF++I++   ++G++QL R K +++    +  A  +++E NG +DLR F+
Sbjct  301  FAALPGMPTGVFITIAIICGAGGMLQLQRAKPKAE----EQGAVAVAPEMNGKEDLRTFS  356

Query  361  PTRAYLLLFHPIWQGQPTATALVQNIRRLRNKLVYRFGFTLPSFDIEFSDRLAEDEFQFC  420
            P+R ++L FHP  Q  +   ALV +IR+ RN+LV +FG+TLPSF IE+ D+L  DEF+F 
Sbjct  357  PSRQFVLQFHPG-QNSALVDALVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFT  415

Query  421  VYEIPYVKATFVTDRLAVASAAVEQVDTELATPGPTLRDESQWLWLPLAHVSQQPDDVPR  480
            VY++P +KATF   ++AV     +  D   A +G T R+E QW+WLP    ++Q ++++ 
Sbjct  416  VYDVPMLKATFTQTHVAVDVRQFNGEDVPAAISGTTDRQEDQWVWLP----AEQGGELAT  471

Query  481  WTADELILARMEQAIHRTGSQFIGLQETKSILAWLESEQPELAQELQRIMPLSRFASVLQ  540
             ++  LI  RME+A++  G+QFIGLQETK+IL+WLESEQPELAQE+QR++ L+RF++VLQ
Sbjct  472  VSSMTLITERMERALQSCGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQ  531

Query  541  RLASERVPLRSVRPIAEALIEVGQHERDTLALTDYVRLALKSQICHQYSDENSLAVWLLT  600
            RLASE VPLR++R IAE+LIE  QHERDT  LTDYVR+ALKSQI HQY + ++L VWLLT
Sbjct  532  RLASECVPLRAIRVIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADGLQVWLLT  591

Query  601  PESEELLRDALRQTQNETFFALTQDYASTLLSQLRQAFPPLSSQRSLVLVAQDLRSPLRT  660
            PESE LLRD+LRQTQ ETFFAL++D +  L+ QL+ AFP  +++++++LVAQDLRSPLRT
Sbjct  592  PESEGLLRDGLRQTQTETFFALSNDISQMLVQQLHIAFPLRAPEQAVLLVAQDLRSPLRT  651

Query  661  LLQDEFHHVPVLSFTELESTLSINVIGRLDLYDSPDP  697
            LL++EF HVPVLSF+E+ ++  + V+GR+DL D  +P
Sbjct  652  LLREEFYHVPVLSFAEISNAAKVRVMGRFDLEDDLEP  688

14) hrpI in NC_004547


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  726 bits (2745),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 452/697 (65%), Positives = 576/697 (83%), Gaps = 9/697 (1%)

Query  1    MNLLIIWLNRIALSAMQRSEVVGAvivmsivfmmiiPLPTGLIDVLIALNICASSLLIVL  60
            MN +I  LN +ALSAM+RSEVVGA +V++IVFMMI PLPTGL+DVLIA+NIC S LLI+L
Sbjct  1    MNQIINFLNMVALSAMRRSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIML  60

Query  61   AMYLPKPLAFSTFPAVLLLTTMFRLAISISTTRQILLQQDGGHIVEAFGNYVVGGNLAVG  120
            AM LP+PLAFSTFPAVLLLTTMFRLA+SISTTR ILL+QD+GHIVEAFG++VVGGNLAVG
Sbjct  61   AMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVG  120

Query  121  LVIFLILTVVNFMVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIEAHQARQRRE  180
            LVIFLILTVVNF+VITKGSERVAEV+ARFTLDAMPGKQMSIDSDLRA LI   +AR+RR 
Sbjct  121  LVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRS  180

Query  181  NLAKESQLFGAMDGAMKFVKGDAIASLVIVFINMIGGFAIGVLQHNMAASDAMHVYSVLT  240
            +L KESQLFGAMDGAMKFV+GDAIASL+IV INMIGG++IGV+QH M+A+DA+++Y+VLT
Sbjct  181  ELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLT  240

Query  241  IGDGLIAQIPALLISLTAGMIITRVSADGQKVDANIGREIAEQLTSQPKAWIISSIGMFG  300
            IGDGLIAQIPALLIS+T GMIITRV+     V+ANIGREIAEQ+TSQPKAWII++++M+G
Sbjct  241  IGDGLIAQIPALLISVTCGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIAAVAMLG  300

Query  301  FALLPGMPTLVFVAIslsslgsglFQLWRIKQQGQLDANQLEADNMPAEQNGYQDLRRFN  360
            FA LPGMPT VF++I++   ++G++QL R K +++    +  A  +++E NG +DLR F+
Sbjct  301  FAALPGMPTGVFITIAIICGAGGMLQLQRAKPKAE----EQGAVAVAPEMNGKEDLRTFS  356

Query  361  PTRAYLLLFHPVWQGQPTATVLVQNIRRLRNRLVYRFGFTLPSFDIEFSDRLAEDEFQFC  420
            P+R ++L FHP  Q  +    LV +IR+ RNRLV +FG+TLPSF IE+ D+L  DEF+F 
Sbjct  357  PSRQFVLQFHPG-QNSALVDALVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFT  415

Query  421  VYEIPYVKATFVTDQLAVANGAIEQVDATIATPGHTLRDESQWLWLPLAHVAQQPDDIPR  480
            VY++P +KATF   ++AV    ++  D   A +G T R+E QW+WLP    A+Q ++++ 
Sbjct  416  VYDVPMLKATFTQTHVAVDVRQFNGEDVPAAISGTTDRQEDQWVWLP----AEQGGELAT  471

Query  481  WTSDELILARMEQAIHRTGSQFIGLQETKSILAWLESEQPELAQELQRIMPLSRFASVLQ  540
             +S  LI  RME+A++  G+QFIGLQETK+IL+WLESEQPELAQE+QR++ L+RF++VLQ
Sbjct  472  VSSMTLITERMERALQSCGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQ  531

Query  541  RLASERVPLRSVRPIAEALIEVGQHERDTLALTDYVRLALKSQICHQYSDENNLAVWLLT  600
            RLASE VPLR++R IAE+LIE  QHERDT  LTDYVR+ALKSQI HQY + + L VWLLT
Sbjct  532  RLASECVPLRAIRVIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADGLQVWLLT  591

Query  601  PESEELLRDALRQTQNETFFALTQDYASTLLSQLRQAFPPFSSQSSLVLVAQDLRSPLRT  660
            PESE LLRD+LRQTQ ETFFAL++D +  L+ QL+ AFP  +++ +++LVAQDLRSPLRT
Sbjct  592  PESEGLLRDGLRQTQTETFFALSNDISQMLVQQLHIAFPLRAPEQAVLLVAQDLRSPLRT  651

Query  661  LLQDEFHHVPVLSFTELESTLSINVIGRLDLYDSPDP  697
            LL++EF HVPVLSF+E+ ++  + V+GR+DL D  +P
Sbjct  652  LLREEFYHVPVLSFAEISNAAKVRVMGRFDLEDDLEP  688

15) Dd586_1888 in NC_013592


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  710 bits (2684),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 444/700 (64%), Positives = 571/700 (82%), Gaps = 9/700 (1%)

Query  1    MAVLIAWLNRFAMSAMQRSEvvgavivmaivfmmiiPLPTDLIDVLIALNICISSLLIVL  60
            M  +I  LN  A+SAM+RSEVVGA +V+AIVFMMI PLPT+L+DVLIA+NICIS LLI+L
Sbjct  1    MNQIINFLNMVALSAMRRSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIML  60

Query  61   AMYLPKPLAFSTFPAVLLLTTMFRLALSISTTRQILLQQDAGHVVEAFGNFVVGGNLAVG  120
            AM LP+PLAFSTFPAVLLLTTMFRLALSISTTR ILL+QDAGH+VEAFG+FVVGGNLAVG
Sbjct  61   AMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVG  120

Query  121  LVIFLILTVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIDSQQARQRRE  180
            LVIFLILTVVNFLVITKGSERVAEV+ARFTLDAMPGKQMSIDSDLRA LI   +AR+RR 
Sbjct  121  LVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRS  180

Query  181  NLAKESQLFGAMDGAMKFVKGDAIAGLVIVFINMIGGFAIGVLQNGMAAGDAMHIYSVLT  240
            +L KESQLFGAMDGAMKFV+GDAIA+L+IV INMIGG++IGV+Q+GM+AGDA+++Y+VLT
Sbjct  181  ELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLT  240

Query  241  IGDGLIAQIPALLISLTAGMIITRVSADGQQTDNNIGREIAEQLTSQPKAWIISSVGMLG  300
            IGDGLIAQIPALLIS+T GMIITRV+      + NIGREIAEQ+TSQPKAWII++V+MLG
Sbjct  241  IGDGLIAQIPALLISVTCGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIAAVAMLG  300

Query  301  FALLPGMPTLVFLMISLVSLGSGLFQLWRAKQNGLQDALLANDNLPADQNGYQDLRRFNP  360
            FA LPGMPT VF+ I+++  ++G++QL RAK ++ +++ +A   ++++ NG +DLR F+P
Sbjct  301  FAALPGMPTGVFITIAIICGAGGMLQLQRAKPKAEEQGAVA---VAPEMNGKEDLRTFSP  357

Query  361  TRAYLLQFHTVWQGTAAAAVLVQNIRRLRNRLVYHFGFTLPSFDIEFTPTVPEDEFRFCV  420
            +R ++LQFH   Q +A    LV +IR+ RNRLV +FG+TLPSF IE+   +  DEFRF V
Sbjct  358  SRQFVLQFHPG-QNSALVDALVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFTV  416

Query  421  YEIPQLRASFGVPLLAVSREQLPQDGQDDGMIPGLAARDEHHLLWMTPEHPMLQQPQLCP  480
            Y++P L+A+F    +AV   Q+  ++   + I+G + R+E++ +W+ +E    Q  +L  
Sbjct  417  YDVPMLKATFTQTHVAVDVRQFNGEDVPAA-ISGTTDRQEDQWVWLPAE----QGGELAT  471

Query  481  WNAEALILMRMENAMHRSGAQFIGLQETKSILAWLESEQPELAQELQRIMPLSRFASVLQ  540
             ++ +LI  RME A++  G+QFIGLQETK+IL+WLESEQPELAQE+QR++ L+RF++VLQ
Sbjct  472  VSSMTLITERMERALQSCGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQ  531

Query  541  RLASERVPLRSVRPIAEALIDIGQHERDINALTDYVRLELKAQICHQYSQEDSLTVWLLT  600
            RLASE VPLR++R IAE+LI+  QHERD N LTDYVR+ LK+QI HQY   D+L VWLLT
Sbjct  532  RLASECVPLRAIRVIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADGLQVWLLT  591

Query  601  PETEELLRDALRQTQSDTFFALNQEYAATLLGQLRRAFPPMLPSSALILVAQDLRSPLRI  660
            PE+E LLRD+LRQTQ++TFFAL+++ +  L+ QL+ AFP   P  A++LVAQDLRSPLR 
Sbjct  592  PESEGLLRDGLRQTQTETFFALSNDISQMLVQQLHIAFPLRAPEQAVLLVAQDLRSPLRT  651

Query  661  LLQDEFHHVPVLSFTELESHLSINVAGRIDLQDRTDPFNA  700
            LL++EF HVPVLSF+E+ +   + V GR+DL+D  +P + 
Sbjct  652  LLREEFYHVPVLSFAEISNAAKVRVMGRFDLEDDLEPMDN  691

16) D781_3944 in NC_020064


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  705 bits (2665),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 420/697 (61%), Positives = 570/697 (82%), Gaps = 15/697 (2%)

Query  1    MNSLFAILNKIAISAMQRSEIVGAAFALALVFMLIVPLPLGLIDMLIAVNICLSSLLIVL  60
            MN ++ +LN +A+SAM+RSE+VGA F +A+VFM+I PLP GL+D+LIAVNIC+S LLI+L
Sbjct  1    MNQIINFLNMVALSAMRRSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIML  60

Query  61   AMYLPKPLAFSTFPAVLLLTTMFRLALSISVTRQILIQQDAGHIVEAFGNFVVGGNLAVG  120
            AM LP+PLAFSTFPAVLLLTTMFRLALSIS TR IL++QDAGHIVEAFG+FVVGGNLAVG
Sbjct  61   AMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVG  120

Query  121  MVMFLILTVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIDVHQARNRRN  180
            +V+FLILTVVNFLVITKGSERVAEV+ARFTLDAMPGKQMSIDSDLRA LI V +ARNRR+
Sbjct  121  LVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRS  180

Query  181  ELAKESQLFGAMDGAMKFVKGDAIAGLVILCINLIGGFSIGVLQLDMAPGDAMHTYSILT  240
            EL KESQLFGAMDGAMKFV+GDAIA+L+I+ IN+IGG+SIGV+Q +M++GDA++ Y++LT
Sbjct  181  ELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLT  240

Query  241  IGDGLIAQIPALLISLTAGMIITRVSSESDSTETPNVGREIAEQLTSQPKAWILASMGMI  300
            IGDGLIAQIPALLIS+T GMIITRV++   + E+ N+GREIAEQ+TSQPKAWI+A+++M+
Sbjct  241  IGDGLIAQIPALLISVTCGMIITRVPNTEAGVEA-NIGREIAEQITSQPKAWIIAAVAML  299

Query  301  GFALVPGMPGVVFSLLALITLGGGGFQVWRARQEMLLAKPQIENEV-IPPELNGREDLRQ  359
            GFA +PGMP  VF  +A+I  +GG +Q+ RA+     +K++ +  V ++PE+NG+EDLR 
Sbjct  300  GFAALPGMPTGVFITIAIICGAGGMLQLQRAK-----PKAEEQGAVAVAPEMNGKEDLRT  354

Query  360  FNPTRPWLIQFHTSRRGAAETLDLVQEIRRLRNRIVYHFGFTLPAFDIEFTDKQPVDEFR  419
            F+P+R  ++QFH ++ +A     LV EIR+ RNR+V +FG+TLP+F IE+ D    DEFR
Sbjct  355  FSPSRQFVLQFHPGQNSALVD-ALVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFR  413

Query  420  FSVYEIPKVVGTFDSALTALDVRQLESLSEAEREGAVPGDEARGEEDYLWLAAGHPLLAR  479
            F+VY++P + +TF  +  A+DVRQ+++    +  +A++G   R E++ +WL+A +     
Sbjct  414  FTVYDVPMLKATFTQTHVAVDVRQFNG---EDVPAAISGTTDRQEDQWVWLPAEQG----  466

Query  480  EDLTRHSAGELLLTRMEDAIHASSPHFIGLQETRALMSWLDAEQPELAQELQRVMPLTRF  539
             +L+  S+  L+  RME A+++ +P+FIGLQET+A+++WL++EQPELAQE+QRV+ LTRF
Sbjct  467  GELATVSSMTLITERMERALQSCGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRF  526

Query  540  SGVLQKLVAERIPLRSVRAIGEALIEHGQHERDVNLLTEQVRITLKTHLCHQYGQPDGIH  599
            S+VLQ+L +E +PLR++R I+E+LIEH QHERD N+LT+ VRI+LK+++ HQY  +DG++
Sbjct  527  SAVLQRLASECVPLRAIRVIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADGLQ  586

Query  600  AWLLTPELEEALRDSLRQTQNDIFFALSQQQIQLIHQEVKQAYAPGQDKQAVLLAAQDLR  659
             WLLTPE E  LRD+LRQTQ + FFALS++  Q++ Q++  A++     QAVLL AQDLR
Sbjct  587  VWLLTPESEGLLRDGLRQTQTETFFALSNDISQMLVQQLHIAFPLRAPEQAVLLVAQDLR  646

Query  660  GPLRALIQERFHAVPVLSFAELEPALAVQVLGRLDVD  696
            +PLR+L++E F  VPVLSFAE+  A  V+V+GR+D++
Sbjct  647  SPLRTLLREEFYHVPVLSFAEISNAAKVRVMGRFDLE  683

17) hrcV in NC_016830


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  699 bits (2642),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 451/696 (65%), Positives = 577/696 (83%), Gaps = 9/696 (1%)

Query  1    MIALLNKVANEAVRRIEVVGAFVVLGIVFMLILPLPTSVVDALIAiniciscllivlslY  60
            +I +LN VA  A+RR EVVGAF V++IVFM+I PLPT++VD LIA+NICISCLLI+L++ 
Sbjct  4    IINFLNMVALSAMRRSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIMLAMH  63

Query  61   LPRPLAFSSFPAVlllttlfrlalSVATTRLILLQGDAGHIVQAFGNFVVGGNLAVGLVI  120
            LPRPLAFS+FPAVLLLTT+FRLALS++TTRLILL+ DAGHIV+AFG+FVVGGNLAVGLVI
Sbjct  64   LPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVGLVI  123

Query  121  FLILTVVNFLVITKGSERVAEVAARFTLDALPGKQMSIDSDLRANLIDVSEARRRREELN  180
            FLILTVVNFLVITKGSERVAEV+ARFTLDA+PGKQMSIDSDLRANLI V EAR RR ELN
Sbjct  124  FLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRSELN  183

Query  181  KESQLFGAMDGAMKFVKGDAIAGLVIVVINLIGGFSVGMMQHDMGASESMHLYAVLTIGD  240
            KESQLFGAMDGAMKFV+GDAIA+L+IV IN+IGG+S+G++QH+M A+++++LY+VLTIGD
Sbjct  184  KESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLTIGD  243

Query  241  GLIAQIPALLISLTAGMIITRVSPEGQPAGSSVGKEIAQQLTAEPKAWVIASVGMLGFAA  300
            GLIAQIPALLIS+T GMIITRV+       +++G+EIA+Q+T++PKAW+IA+V+MLGFAA
Sbjct  244  GLIAQIPALLISVTCGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIAAVAMLGFAA  303

Query  301  LPGMPTLVFIVIALITGTAGIVQLYSRARQARQGDQPAEVVAPAQNGAEDLRSFDPTRAY  360
            LPGMPT VFI IA+I G++G++QL  RA+ ++  +Q A  VAP  NG EDLR+F P+R +
Sbjct  304  LPGMPTGVFITIAIICGAGGMLQL-QRAK-PKAEEQGAVAVAPEMNGKEDLRTFSPSRQF  361

Query  361  LLQFSKAMEGNAAAEEAIQAIRKKRNALVAGFGLTLPPFEIEYSALLEDDEFRFCVHEVP  420
            +LQF  + + +A  +  +  IR++RN LV  FGLTLP+F IEY   L+ DEFRF V +VP
Sbjct  362  VLQFHPG-QNSALVDALVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFTVYDVP  420

Query  421  MLRATFGE-RVAVARGPLPLEPRDGQV-GSEVRDEQQWLWLTPDDPLLADERVEAVSAAE  478
            ML+ATF + +VAV    +  E   + + G+  R+E+QW+WL +++    +  + +VS+  
Sbjct  421  MLKATFTQTHVAVDVRQFNGEDVPAAISGTTDRQEDQWVWLPAEQ----GGELATVSSMT  476

Query  479  LLVERMSRAMFATGPQFLGLQESKSILSWLEAGQPELVQELQRTMPLARFAAVLQRLAGE  538
            L+ ERM RA+ + GPQF+GLQE+K+IL+WLE+ QPEL QE+QR + L+RF+AVLQRLA+E
Sbjct  477  LITERMERALQSCGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQRLASE  536

Query  539  GVPLRAVRLIAESLIEHGQHERDVGALTDYARIALKSQIYHQYRDEDGLHVWLLTPETEG  598
             VPLRA+R+IAE+LIEH QHERD   LTDY RIALKSQIYHQY + DGL+VWLLTPE+EG
Sbjct  537  CVPLRAIRVIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADGLQVWLLTPESEG  596

Query  599  LLRDALRQTQTETFFALESLHTRALVMQLREGFPLRAKRVAVLLVAQdlraplrdllrdE  658
            LLRD+LRQTQTETFFAL +  ++ LV QL+ +FPLRA   AVLLVAQDLR+PLR LLR+E
Sbjct  597  LLRDGLRQTQTETFFALSNDISQMLVQQLHIAFPLRAPEQAVLLVAQDLRSPLRTLLREE  656

Query  659  FNHVPVLAFSELHSNAQVTVLGRFDLEQEKLRMEDA  694
            F HVPVL+F+E+ + A+V V+GRFDLE++   M++ 
Sbjct  657  FYHVPVLSFAEISNAAKVRVMGRFDLEDDLEPMDNE  692

18) PSEBR_a5388 in NC_015379


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  697 bits (2635),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 448/697 (65%), Positives = 574/697 (83%), Gaps = 11/697 (1%)

Query  1    MIALLNKVANEAVRRIEVVGAFVVLGIVFMLILPLPTPVVDALIAINiciscllivisly  60
            +I +LN VA  A+RR EVVGAF V++IVFM+I PLPT +VD LIA+NICISCLLI++++ 
Sbjct  4    IINFLNMVALSAMRRSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIMLAMH  63

Query  61   lPRPLAFSSFPAVlllttlfrlalSVATTRLILLQGDAGHIVQAFGNFVVGGNLAVGLVI  120
            LPRPLAFS+FPAVLLLTT+FRLALS++TTRLILL+ DAGHIV+AFG+FVVGGNLAVGLVI
Sbjct  64   LPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVGLVI  123

Query  121  FLILTVVNFLVITKGSERVAEVAARFTLDALPGKQMSIDSDLRANLIDVTEARRRREELN  180
            FLILTVVNFLVITKGSERVAEV+ARFTLDA+PGKQMSIDSDLRANLI V EAR RR ELN
Sbjct  124  FLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRSELN  183

Query  181  KESQLFGAMDGAMKFVKGDAIAGLVIVVINLIGGFTVGMMQHDMGASESMHLYAVLTIGD  240
            KESQLFGAMDGAMKFV+GDAIA+L+IV IN+IGG+++G++QH+M A+++++LY+VLTIGD
Sbjct  184  KESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLTIGD  243

Query  241  GLIAQIPALLISLTAGMIITRVSPEGQPAGSSVGKEIAQQLTAEPKAWVIASVGMLGFAA  300
            GLIAQIPALLIS+T GMIITRV+       +++G+EIA+Q+T++PKAW+IA+V+MLGFAA
Sbjct  244  GLIAQIPALLISVTCGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIAAVAMLGFAA  303

Query  301  LPGMPTLVFIVIALITGTAGIVQLYSRARQVRQGKQPAEVVAPAHNGAEDLRSFDPTRAF  360
            LPGMPT VFI IA+I G++G++QL  RA+  +   Q A  VAP  NG EDLR+F P+R F
Sbjct  304  LPGMPTGVFITIAIICGAGGMLQL-QRAKP-KAEEQGAVAVAPEMNGKEDLRTFSPSRQF  361

Query  361  LLQFSKAMEGNAAAEEVIQAIRKKRNALVAGFGLTLPPFEIEYSVLLEDDEFRFCVHEVP  420
            +LQF  + + +A  + ++  IR++RN LV  FGLTLP+F IEY   L+ DEFRF V +VP
Sbjct  362  VLQFHPG-QNSALVDALVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFTVYDVP  420

Query  421  MLRATFGERIAVARGPLPFEPRD---GLVGNEVRDEQQWLWLTPDDPLLADERVEAVPAA  477
            ML+ATF +   VA +   F+  D   ++ G   R+E+QW+WL +++    +  + +V++ 
Sbjct  421  MLKATFTQ-THVAVDVRQFNGEDVPAAISGTTDRQEDQWVWLPAEQ----GGELATVSSM  475

Query  478  ELLVERMSRAMFATGPQFLGLQESKSILSWLEAGQPELVQELQRTMPLARFAAVLQRLAG  537
             L+ ERM RA+ + GPQF+GLQE+K+IL+WLE+ QPEL QE+QR + L+RF+AVLQRLA+
Sbjct  476  TLITERMERALQSCGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQRLAS  535

Query  538  EGVPLRAVRLIAESLIEHGQHERDVGALTDYARIALKSQIYHQYRDENGLHVWLLTPETE  597
            E VPLRA+R+IAE+LIEH QHERD   LTDY RIALKSQIYHQY + +GL+VWLLTPE+E
Sbjct  536  ECVPLRAIRVIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADGLQVWLLTPESE  595

Query  598  GLLRDALRQTQTETFFALESLHTRALVMQLREGFPLRAKRVAVLLVAQdlraplrdllrd  657
            GLLRD+LRQTQTETFFAL +  ++ LV QL+ +FPLRA   AVLLVAQDLR+PLR LLR+
Sbjct  596  GLLRDGLRQTQTETFFALSNDISQMLVQQLHIAFPLRAPEQAVLLVAQDLRSPLRTLLRE  655

Query  658  EFNHVPVLAFSELHSNAQVTVLGRFDLEQEKLRMEDA  694
            EF HVPVL+F+E+ + A+V V+GRFDLE++   M++ 
Sbjct  656  EFYHVPVLSFAEISNAAKVRVMGRFDLEDDLEPMDNE  692

19) Dd1591_1891 in NC_012912


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  689 bits (2607),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 446/700 (64%), Positives = 563/700 (81%), Gaps = 9/700 (1%)

Query  1    MAILIVWLNRFAISAMQRSEvvgavivmaivfmmiiPLPTGLIDVLIAFNICISSLLIVL  60
            M  +I  LN  A+SAM+RSEVVGA +V+AIVFMMI PLPTGL+DVLIA NICIS LLI+L
Sbjct  1    MNQIINFLNMVALSAMRRSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIML  60

Query  61   AMYLPKPLAFSTFPAVLLLTTMFRLALSISTTRQILLQQDAGHVVEAFGNFVVGGNLAVG  120
            AM LP+PLAFSTFPAVLLLTTMFRLALSISTTR ILL+QDAGH+VEAFG+FVVGGNLAVG
Sbjct  61   AMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVG  120

Query  121  LVIFMILTVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIDSQQARQRRE  180
            LVIF+ILTVVNFLVITKGSERVAEV+ARFTLDAMPGKQMSIDSDLRA LI   +AR+RR 
Sbjct  121  LVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRS  180

Query  181  NLAKESQLFGAMDGAMKFVKGDAIASLVIVFINMIGGFAIGVLQNGMAAGDAMHIYSVLT  240
            +L KESQLFGAMDGAMKFV+GDAIASL+IV INMIGG++IGV+Q+GM+AGDA+++Y+VLT
Sbjct  181  ELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLT  240

Query  241  IGDGLIAQIPALLISLTAGMIITRVSADGQKTDNNIGREIAEQLTSQPKAWIISSVGMLG  300
            IGDGLIAQIPALLIS+T GMIITRV+      + NIGREIAEQ+TSQPKAWII++V+MLG
Sbjct  241  IGDGLIAQIPALLISVTCGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIAAVAMLG  300

Query  301  FALLPGMPTLVFllislaslgsglFQLWRAKQSglqdalladdglpadqNGYQDLRRFNP  360
            FA LPGMPT VF+ I++   ++G++QL RAK         +  +++++ NG +DLR F+P
Sbjct  301  FAALPGMPTGVFITIAIICGAGGMLQLQRAKPK---AEEQGAVAVAPEMNGKEDLRTFSP  357

Query  361  TRAYLLQFHTVWQGAAAAALLVQEIRRLRNRLVYHFGFTLPSFDIEFTPNVPEDEFRFCV  420
            +R ++LQFH   Q +A    LV EIR+ RNRLV +FG+TLPSF IE+  ++  DEFRF V
Sbjct  358  SRQFVLQFHPG-QNSALVDALVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFTV  416

Query  421  YEIPQLRASFGVPLLAVPRGQMPEDALDDGMMLGLATRDEHHLLWLTPEHPMLQQPELSP  480
            Y++P L+A+F    +AV   Q   + +  ++  G + R+E++ +WL +E    Q  EL+ 
Sbjct  417  YDVPMLKATFTQTHVAVDVRQFNGEDVPAAIS-GTTDRQEDQWVWLPAE----QGGELAT  471

Query  481  WSPDALILSRMENAIHRSGAQFIGLQETKSILAWLESEQPELAQELQRIMPLSRFASVLQ  540
             S+ +LI  RME A++  G+QFIGLQETK+IL+WLESEQPELAQE+QR++ L+RF++VLQ
Sbjct  472  VSSMTLITERMERALQSCGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQ  531

Query  541  RLASERVPLRSVRPIAEALIDIGQHERDINALTDYVRLELKAQICHQYSQDDSLTVWLLT  600
            RLASE VPLR++R IAE+LI+  QHERD N LTDYVR+ LK+QI HQY   D+L VWLLT
Sbjct  532  RLASECVPLRAIRVIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADGLQVWLLT  591

Query  601  PETEELLRDALRQTQNETFFALTQEYAATLLGQLRRAFPPMMAPSSLILVAQDLRSPLRI  660
            PE+E LLRD+LRQTQ ETFFAL+++ +  L+ QL+ AFP   +  +++LVAQDLRSPLR 
Sbjct  592  PESEGLLRDGLRQTQTETFFALSNDISQMLVQQLHIAFPLRAPEQAVLLVAQDLRSPLRT  651

Query  661  LLQDEFHHVPVLSFTELESHLSINVAGRIDLLDRIDPFNA  700
            LL++EF HVPVLSF+E+ +   + V GR+DL D ++P + 
Sbjct  652  LLREEFYHVPVLSFAEISNAAKVRVMGRFDLEDDLEPMDN  691

20) Marme_1079 in NC_015276


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  673 bits (2546),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 423/699 (61%), Positives = 563/699 (81%), Gaps = 15/699 (2%)

Query  1    MNKLFILLNTFAITMMKRSEIVGAVFVLAIVFMMIIPMPTGLVDFlialnislssllial  60
            MN+++ +LN  A++ M+RSE+VGA FV+AIVFMMI P+PTGLVD LIA+NI +S LLI L
Sbjct  1    MNQIINFLNMVALSAMRRSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIML  60

Query  61   aMYLPSPLAFSSFPAVLLLTTMFRLALSISTTRLILLEQDAGDIVEAFGNFVVGGNLAVG  120
            AM LP PLAFS+FPAVLLLTTMFRLALSISTTRLILL+QDAG+IVEAFG+FVVGGNLAVG
Sbjct  61   AMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVG  120

Query  121  LVIFLILTVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLLAPQEARFKRE  180
            LVIFLILTVVNFLVITKGSERVAEV+ARFTLDAMPGKQMSIDSDLRA L++  EAR +R 
Sbjct  121  LVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRS  180

Query  181  QLGKESQLFGAMDGAMKFVKGDAIAGLIIVFINLIGGFSIGTLQHDMSASESMHLYSVLT  240
            +L KESQLFGAMDGAMKFV+GDAIA+LIIV IN+IGG+SIG +QH+M+A+++++LY+VLT
Sbjct  181  ELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLT  240

Query  241  IGDGLIAQIPALLISLTAGMIITRVAPDNQEIDANIGREMAQQISSQPKAWIIAACGLLG  300
            IGDGLIAQIPALLIS+T GMIITRV+  +  ++ANIGRE+A+QI+SQPKAWIIAA ++LG
Sbjct  241  IGDGLIAQIPALLISVTCGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIAAVAMLG  300

Query  301  FAILPGMPTVSFLSLAIVFLLCGGFQLYKAMKIRQFQQQESDQTATPAENGDEDLRRFNP  360
            FA LPGMPT  F+++AI+   CG+  + +  + +   ++++  + +P  NG EDLR F+P
Sbjct  301  FAALPGMPTGVFITIAII---CGAGGMLQLQRAKPKAEEQGAVAVAPEMNGKEDLRTFSP  357

Query  361  SRPYLLLFNPIRSTPNDPFTVQLIREARRCRNRIVDTFGITLPSFDIDYDATLGEDEFCF  420
            SR ++L F+P     N ++   L+ E R+ RNR+V  FG+TLPSF I+Y   L  DEF F
Sbjct  358  SRQFVLQFHP---GQNSALVDALVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFRF  414

Query  421  CVYEVPYIRATYTPDLIALNASELTEEELGKEDFKDRRTGSPEREEERWLWIPSTSPLTQ  480
             VY+VP ++AT+T   +A++  ++  E++         +G+ +R+E++W+W+P+     Q
Sbjct  415  TVYDVPMLKATFTQTHVAVDVRQFNGEDVPAA-----ISGTTDRQEDQWVWLPA----EQ  465

Query  481  NESYTFTLPirlilerlerAFFATGPQFIGLQEAKTFVSWIEMEQPELAQELQRIVPTSR  540
                +   ++ LI ER+ERA+ + GPQFIGLQE+K++++W+E EQPELAQE+QR++  +R
Sbjct  466  GGELATVSSMTLITERMERALQSCGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTR  525

Query  541  FASVLKRLAAESVPLRAIRPIAEALIEHGQYERDTGALTDFVRISLKAQICHQYTSDQGM  600
            F++VL+RLA+E VPLRAIR IAE+LIEH Q ERDT  LTD+VRI+LK+QI HQY + +G+
Sbjct  526  FSAVLQRLASECVPLRAIRVIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADGL  585

Query  601  HVWLLTPEAEETLRDSLRQTQTESFFALSREANQSLVEQLRDAFPILATPIPVLLVAQDL  660
            +VWLLTPE+E  LRD+LRQTQTE+FFALS + +Q LV+QL+ AFP+ A   +VLLVAQDL
Sbjct  586  QVWLLTPESEGLLRDGLRQTQTETFFALSNDISQMLVQQLHIAFPLRAPEQAVLLVAQDL  645

Query  661  RRILRNLLQDEFNHIPVLSFTELQSTSHVNVLGHISLDG  699
            R  LR LL++EF H+PVLSF+E+ +++ V V+G++ L++
Sbjct  646  RSPLRTLLREEFYHVPVLSFAEISNAAKVRVMGRFDLED  684

21) rscV in NC_017911


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  661 bits (2499),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 415/680 (62%), Positives = 553/680 (82%), Gaps = 9/680 (1%)

Query  12   LKVAQRAEVLGavvvmaiififivPLPTWLVDILIALNICISCLLIVLALYLPGPLAFSS  71
            L   +R+EV+GA  V+AI+F+ I PLPT LVD+LIA+NICISCLLI+LA+ LP PLAFS+
Sbjct  13   LSAMRRSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIMLAMHLPRPLAFST  72

Query  72   FPSILLLTTMFRLALSIATTRLILLEQDAGDIVEAFGNFVVGGNLAVGMVIFLILTLVNF  131
            FP++LLLTTMFRLALSI+TTRLILL+QDAG+IVEAFG+FVVGGNLAVG+VIFLILT+VNF
Sbjct  73   FPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVGLVIFLILTVVNF  132

Query  132  LVITKGSERVAEVAARFSLDAMPGKQMSIDSDLRAGLIDGVQARDKRDQLSRESQLFGAM  191
            LVITKGSERVAEV+ARF+LDAMPGKQMSIDSDLRA LI   +AR++R +L++ESQLFGAM
Sbjct  133  LVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRSELNKESQLFGAM  192

Query  192  DGAMKFVKGDAIAGLIIVVVNLLGGFSTGMFQHGLSAADSISLYSVLTIGDGLIAQIPAL  251
            DGAMKFV+GDAIA+LIIV +N++GG+S G+ QHG++A+D++ LY+VLTIGDGLIAQIPAL
Sbjct  193  DGAMKFVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLTIGDGLIAQIPAL  252

Query  252  LISLTAGMIITRVAPDGRKGVSNMGVEIARQMTSEPKSWVIASVGMLAFALVPGMPTLVF  311
            LIS+T GMIITRV+       +N+G EIA Q+TS+PK+W+IA+V+ML+FA +PGMPT VF
Sbjct  253  LISVTCGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIAAVAMLGFAALPGMPTGVF  312

Query  312  ILIALITGCVGYYLVRQRQRQAEPANEAAEVVRPEENGKEDLRGFDPSRPYLLQFSPVLR  371
            I IA+I G  G  +++ ++ ++ + +++A  V PE NGKEDLR F PSR ++LQF P  +
Sbjct  313  ITIAIICGAGG--MLQLQRAKPKAEEQGAVAVAPEMNGKEDLRTFSPSRQFVLQFHPG-Q  369

Query  372  GTPEVTDLIHGIRQARNSLVANIGLTLPPFEVELDDSLAADEMRFCVHEVPMVRASVVN-  430
             ++ V  L+  IRQ RN LV ++GLTLP+F +E  D L +DE RF V +VPM++A+  + 
Sbjct  370  NSALVDALVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFTVYDVPMLKATFTQT  429

Query  431  HVAVERKALTVEP-EHAIPGLAERdeqdwlwlppddplledpeleRFTATHLILERMRQA  489
            HVAV+ + +  E    AI+G ++R+E++W+WLP+++           ++  LI ERM +A
Sbjct  430  HVAVDVRQFNGEDVPAAISGTTDRQEDQWVWLPAEQGGELATV----SSMTLITERMERA  485

Query  490  MMLSGPQFLGIQESKSILSWLEHNQPELVQELQRIMPLSRFSAVLQRLASEGVPLRAVRL  549
            +   GPQF+G+QE+K+IL+WLE +QPEL QE+QR++ L+RFSAVLQRLASE VPLRA+R+
Sbjct  486  LQSCGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQRLASECVPLRAIRV  545

Query  550  IVESLIEYGQHEREPEALADYARIALKAQIYHQYSEADGLHAWLLSPQSENILREALRQT  609
            I E+LIE  QHER+ + L+DY RIALK+QIYHQY  ADGL+ WLL+P+SE +LR++LRQT
Sbjct  546  IAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADGLQVWLLTPESEGLLRDGLRQT  605

Query  610  QTGVFFALDENHSAAFISLLNQAFVLRAKSKSVMLVAQDLRSPLRTLLLEEFNHVPVLSF  669
            QT  FFAL ++ S  ++  L+ AF LRA  ++V+LVAQDLRSPLRTLL EEF HVPVLSF
Sbjct  606  QTETFFALSNDISQMLVQQLHIAFPLRAPEQAVLLVAQDLRSPLRTLLREEFYHVPVLSF  665

Query  670  AELGSTSKVKVLGRIDLGQE  689
            AE+++++KV+V+GR+DL ++
Sbjct  666  AEISNAAKVRVMGRFDLEDD  685

22) H045_00160 in NC_020209


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  661 bits (2500),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 404/656 (62%), Positives = 536/656 (82%), Gaps = 9/656 (1%)

Query  36   PLPTWLVDILIAINICISCLLIVLALYLPGPLAFSSFPSILLLTTMFRLALSIATTRLIL  95
            PLPT LVD+LIA+NICISCLLI+LA+ LP PLAFS+FP++LLLTTMFRLALSI+TTRLIL
Sbjct  37   PLPTGLVDVLIAVNICISCLLIMLAMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLIL  96

Query  96   LEQDAGDIVEAFGNFVVGGNLAVGMVIFLILTLVNFLVITKGSERVAEVAARFSLDAMPG  155
            L+QDAG+IVEAFG+FVVGGNLAVG+VIFLILT+VNFLVITKGSERVAEV+ARF+LDAMPG
Sbjct  97   LNQDAGHIVEAFGQFVVGGNLAVGLVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPG  156

Query  156  KQMSIDSDLRAGLIDGLQAREKREQLSRESQLFGAMDGAMKFVKGDAIAGLIIVVVNLLG  215
            KQMSIDSDLRA LI   +AR++R +L++ESQLFGAMDGAMKFV+GDAIA+LIIV +N++G
Sbjct  157  KQMSIDSDLRANLISVYEARNRRSELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIG  216

Query  216  GFTTGMFQHGLSAAESIQLYSVLTIGDGLIAQIPALLISLTAGMIITRVAPDGRKGVSNM  275
            G++ G+ QHG++A++++QLY+VLTIGDGLIAQIPALLIS+T GMIITRV+       +N+
Sbjct  217  GISIGVVQHGMTAGDALQLYTVLTIGDGLIAQIPALLISVTCGMIITRVPNTEAGVEANI  276

Query  276  GAEIARQMTSEPKSWMIASVGMLAFAVVPGMPTLVFILISAATGFLGYYLMrqrqreekp  335
            G EIA Q+TS+PK+W+IA+V+ML+FA +PGMPT VFI I+   G  G  +++ ++   K+
Sbjct  277  GREIAEQITSQPKAWIIAAVAMLGFAALPGMPTGVFITIAIICGAGG--MLQLQRAKPKA  334

Query  336  keeAANVVRPEENGNEDLRGFDPSRPYLLQFPPSLRGTPEVTDLIHGIRQARNSLVANIG  395
             E++A  V PE NG+EDLR F PSR ++LQF P+ + ++ V  L+  IRQ RN LV ++G
Sbjct  335  EEQGAVAVAPEMNGKEDLRTFSPSRQFVLQFHPG-QNSALVDALVSEIRQRRNRLVVQFG  393

Query  396  LTLPPFEVELDDALAADEMRFCVHEVPMVKAS-VVTLVAVDRKALAVEP-EHAVPGLAER  453
            LTLP+F +E  D L +DE RF V +VPM+KA+   T VAVD + +  E    A++G ++R
Sbjct  394  LTLPSFIIEYVDHLQPDEFRFTVYDVPMLKATFTQTHVAVDVRQFNGEDVPAAISGTTDR  453

Query  454  DEQdwlwlppddplladpalERFTATSLIIERMRQAMMLSGPQFLGIQESKAILSWLEHN  513
            +E++W+WLP+++           ++ +LI ERM +A+   GPQF+G+QE+KAIL+WLE +
Sbjct  454  QEDQWVWLPAEQGGELATV----SSMTLITERMERALQSCGPQFIGLQETKAILGWLESE  509

Query  514  QSELVQELQRIMPLSRFSAVLQRLASEGVPLRAVRLIVESLIEHGQHEREPDALADYARI  573
            Q+EL QE+QR++ L+RFSAVLQRLASE VPLRA+R+I E+LIEH QHER+ + L+DY RI
Sbjct  510  QPELAQEMQRVLTLTRFSAVLQRLASECVPLRAIRVIAETLIEHCQHERDTNVLTDYVRI  569

Query  574  ALKAQIFQQYSEDDGLHAWLLSPHTENILREALRQTQTGVFFALDNESSAALVNLLNQAF  633
            ALK+QI++QY   DGL+ WLL+P++E +LR++LRQTQT  FFAL N+ S  LV+ L+ AF
Sbjct  570  ALKSQIYHQYCGADGLQVWLLTPESEGLLRDGLRQTQTETFFALSNDISQMLVQQLHIAF  629

Query  634  TLRARSKSVMLVAQDLRSPLRALLLEEFNHVPVLSFAELASTSKVKVLGRFDLGQD  689
             LRA  ++V+LVAQDLRSPLR+LL EEF HVPVLSFAE+++++KV+V+GRFDL +D
Sbjct  630  PLRAPEQAVLLVAQDLRSPLRTLLREEFYHVPVLSFAEISNAAKVRVMGRFDLEDD  685

23) hrcV in NC_014500


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  658 bits (2487),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 448/700 (64%), Positives = 568/700 (82%), Gaps = 9/700 (1%)

Query  1    MAVLIAWLNRFAMSAMQRSEvvgavivmaivfmmiiPLPTGLIDVLIAFNICISSLLIVL  60
            M  +I  LN  A+SAM+RSEVVGA +V+AIVFMMI PLPTGL+DVLIA NICIS LLI+L
Sbjct  1    MNQIINFLNMVALSAMRRSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIML  60

Query  61   AMYLPKPLAFSTFPAVLLLTTMFRLALSISTTRQILLQQDAGHVVEAFGNFVVGGNLAVG  120
            AM LP+PLAFSTFPAVLLLTTMFRLALSISTTR ILL+QDAGH+VEAFG+FVVGGNLAVG
Sbjct  61   AMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVG  120

Query  121  LVIFMILTVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIDAQQARQRRE  180
            LVIF+ILTVVNFLVITKGSERVAEV+ARFTLDAMPGKQMSIDSDLRA LI   +AR+RR 
Sbjct  121  LVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRS  180

Query  181  NLAKESQLFGAMDGAMKFVKGDAIASLVIVFINMIGGFAIGVLQNGMAAGDAMHIYSVLT  240
            +L KESQLFGAMDGAMKFV+GDAIASL+IV INMIGG++IGV+Q+GM+AGDA+++Y+VLT
Sbjct  181  ELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLT  240

Query  241  IGDGLIAQIPALLISLTAGMIITRVSADGQKMDNNIGREIAEQLTSQPKAWIISSVGMLG  300
            IGDGLIAQIPALLIS+T GMIITRV+     ++ NIGREIAEQ+TSQPKAWII++V+MLG
Sbjct  241  IGDGLIAQIPALLISVTCGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIAAVAMLG  300

Query  301  FALLPGMPTlvfllislvslgsglfQLWRVKQSGLQDSLLADDGMPAEQNGYQDLRRFNP  360
            FA LPGMPT VF+ I+++  ++G++QL R K  + +++ +A   +++E NG +DLR F+P
Sbjct  301  FAALPGMPTGVFITIAIICGAGGMLQLQRAKPKAEEQGAVA---VAPEMNGKEDLRTFSP  357

Query  361  TRAYLLQFHTVWQGAAAAAVLVQDIRRLRNRLVYHFGFTLPSFDIEFNPSVPEDEFRFCV  420
            +R ++LQFH   Q +A    LV +IR+ RNRLV +FG+TLPSF IE+   +  DEFRF V
Sbjct  358  SRQFVLQFHPG-QNSALVDALVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFTV  416

Query  421  YEIPQLRASFGVPLLAVPRGQLPEAMQDDAMMPGLSARDEHHLLWLTPEHPLLQQPELSP  480
            Y++P L+A+F    +AV   Q+    +  A ++G + R+E++ +WL +E    Q  EL+ 
Sbjct  417  YDVPMLKATFTQTHVAVDVRQFNGE-DVPAAISGTTDRQEDQWVWLPAE----QGGELAT  471

Query  481  WSPDALILSRMENAIHRSGAQFIGLQETKSIlawleaeqpelaqelqRIMPLSRFASVLQ  540
             S+ +LI  RME A++  G+QFIGLQETK+IL+WLE+EQPELAQE+QR++ L+RF++VLQ
Sbjct  472  VSSMTLITERMERALQSCGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQ  531

Query  541  RLASERVPLRSVRPIAEALIEIGQHERDINALTDYVRLELKAQICHQYSQDDSLTVWLLT  600
            RLASE VPLR++R IAE+LIE  QHERD N LTDYVR+ LK+QI HQY   D+L VWLLT
Sbjct  532  RLASECVPLRAIRVIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADGLQVWLLT  591

Query  601  PETEELLRDALRQTQNETFFALTQEYAATLLGLLRRAFPPMTPPSALILVAQDLRSPLRI  660
            PE+E LLRD+LRQTQ ETFFAL+++ +  L+  L+ AFP  +P  A++LVAQDLRSPLR 
Sbjct  592  PESEGLLRDGLRQTQTETFFALSNDISQMLVQQLHIAFPLRAPEQAVLLVAQDLRSPLRT  651

Query  661  LLQDEFHHVPVLSFTELESHLSINVAGRIDLLDRVDPFNA  700
            LL++EF HVPVLSF+E+ +   + V GR+DL D ++P + 
Sbjct  652  LLREEFYHVPVLSFAEISNAAKVRVMGRFDLEDDLEPMDN  691

24) H650_14870 in NC_021500


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  509 bits (1920),  Expect = 3e-145, Method: Compositional matrix adjust.
 Identities = 339/681 (50%), Positives = 493/681 (73%), Gaps = 18/681 (2%)

Query  2    VNQTELIGAVIVMTIVFMMVLPLPVFIIDTALSLNICIATLLAIQALFMQHPLAFSTFPA  61
            + ++E++GA +V++IVFMM+ PLP  ++D  +++NICI+ LL + A+ + +PLAFSTFPA
Sbjct  16   MRRSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIMLAMHLPRPLAFSTFPA  75

Query  62   VLLLTTMFRLALSVATTRMILLQHDAGHVVETFGNFVAGGNLAVGLVIFLILTLVNFLVI  121
            VLLLTTMFRLALS++TTR+ILL++DAGH+VE+FG+FV GGNLAVGLVIFLILT+VNFLVI
Sbjct  76   VLLLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVGLVIFLILTVVNFLVI  135

Query  122  TKGAERVAEVSARFNLDAMPGKQMAIDSDLRSGLIDTADARVRREQLTKESQLFGAMDGA  181
            TKG+ERVAEV+ARF LDAMPGKQM+IDSDLR+ LI   +AR RR +L KESQLFGAMDGA
Sbjct  136  TKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRSELNKESQLFGAMDGA  195

Query  182  MKFVKGDAISGIIIVFINLIGGFSVGILQHGMPAADAMHIYSILSIGDGLVAQipallis  241
            MKFV+GDAI+++IIV IN+IGG+S+G++QHGM A+DA+++Y++L+IGDGL+AQIPALLIS
Sbjct  196  MKFVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLTIGDGLIAQIPALLIS  255

Query  242  laagiiiTRVNSDNAASSLNIGGEIIWQLTRHPKAWIYCGIIMALFAVVPGMPAMlfttl  301
            ++ G+IITRV + +A+   NIG EI  Q+T +PKAWI  ++ M  FA +PGMP+ +F T+
Sbjct  256  VTCGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIAAVAMLGFAALPGMPTGVFITI  315

Query  302  sllcltlaflltRQEKPRLEMAGQPTPSIVGAEPDNSTELMGYENVRRFFPLRAYllqfh  361
            +++C + + L  ++ KP+   A +  +  V++E +   +L  +   R+F  +  +    +
Sbjct  316  AIICGAGGMLQLQRAKPK---AEEQGAVAVAPEMNGKEDLRTFSPSRQF--VLQFHPGQN  370

Query  362  pqhqqqpgfeqllqRIYALRNDTVFEYGLTLPSFELEGNAQLAPDEFRFCVYEVPVIRAT  421
            +   +    E   +     RN  V ++GLTLPSF +E   +L PDEFRF VY+VP+++AT
Sbjct  371  SALVDALVSEIRQR-----RNRLVVQFGLTLPSFIIEYVDHLQPDEFRFTVYDVPMLKAT  425

Query  422  YDPDKCAVTARLVAEDD---GTSGLEEREEQGLRWFDVDDHRLSQYETEKRTSGDLILAR  478
            +     AV  R    +D   + SG  +R+E+   W+  ++      E    +S  LI  R
Sbjct  426  FTQTHVAVDVRQFNGEDVPAAISGTTDRQEDQWVWLPAEQGG----ELATVSSMTLITER  481

Query  479  MRRAILSTGWKFVGLQESKALIDWLRSEQPELADELERCLPIAWFSAVLQRLAAERVTLR  538
            M RA+ S G +F+GLQE+KA+++WL SEQPELA+E++R L +++FSAVLQRLA+E V LR
Sbjct  482  MERALQSCGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQRLASECVPLR  541

Query  539  PLRLIAETLIKHSRHESNLMVLTELVRHALREQICYQYSQHETLNSWLLAPATEAVFRQA  598
            ++R+IAETLI H +HE +  VLT+ VR AL+ QI  QY   + L+ WLL+P +E+++R++
Sbjct  542  AIRVIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADGLQVWLLTPESEGLLRDG  601

Query  599  LNAEGAQS-MTLSSVMHEALLARLAQCFPTDEGTPSVLLVEPELRGPLSGLLRESSTLVP  657
            L    +++  +LS+ + + L+ +L   FP      +VLLV  +LR+PL  LLRE    VP
Sbjct  602  LRQTQTETFFALSNDISQMLVQQLHIAFPLRAPEQAVLLVAQDLRSPLRTLLREEFYHVP  661

Query  658  VLAFSELIPSIKVQIQGRIDL  678
            VL+F+E+  + KV++ GR+DL
Sbjct  662  VLSFAEISNAAKVRVMGRFDL  682

25) HCH_05101 in NC_007645


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  395 bits (1487),  Expect = 4e-111, Method: Compositional matrix adjust.
 Identities = 292/678 (44%), Positives = 485/678 (72%), Gaps = 18/678 (2%)

Query  13   QRNDVVLAIFLVGIIFMMILPMPTMLVDVMIAINMGVSVILLMLALYIKSPLDFSVFPSM  72
            +R++VV A+F+++I+FMMI P+PT LVDV+IA+N+ +S +L+MLA+ +  PL FS FP++
Sbjct  17   RRSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIMLAMHLPRPLAFSTFPAV  76

Query  73   LLITTMFRLALSITTTRLILLQADAGQIVYtfgnfvvggnlvvggvifliltivQFLVIT  132
            LL+TTMFRLALSI+TTRLILL+ DAG+IV +FG+FVVGGNL VG VIFLILT+V+FLVIT
Sbjct  77   LLLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVGLVIFLILTVVNFLVIT  136

Query  133  KGSERVAEVSARFSLDSMPGKQMSIDGDMRAGVIDMEEARVRRAKVEKESQLYGSMDGAM  192
            KGSERVAEV+ARF+LD+MPGKQMSID+D+RA +I + EAR RR+ ++KESQL+G+MDGAM
Sbjct  137  KGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRSELNKESQLFGAMDGAM  196

Query  193  KFVKGDAIAGLIITAVNILGGILVGVTQNGLSAGDAAAIYSVLTIGDGLVAQIPALFISI  252
            KFV+GDAIA+LII A+N++GGI +GV Q+G++AGDA  +Y+VLTIGDGL+AQIPAL+IS+
Sbjct  197  KFVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLTIGDGLIAQIPALLISV  256

Query  253  TAGFIVTRVSTDES---ENLGRDIGGQIGAQPKalfiggalllgfaMIPGFPTMVFLVLA  309
            T G I+TRV+  E+    N+GR+I+ QI +QPKA +I++  +LGFA +PG PT VF+ +A
Sbjct  257  TCGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIAAVAMLGFAALPGMPTGVFITIA  316

Query  310  GLICSIGFIMSRKARHADTDDDDIPAMAAAGQTRTPSKTPEKDDFSPTVPLLLDVAASCQ  369
             +IC+ G ++  +   + +++++  A+A+  + +   +T     FSP+  ++L+  ++ +
Sbjct  317  -IICGAGGMLQLQRAKPKAEEQGAVAVAPEMNGKEDLRT-----FSPSRQFVLQFHPGQN  370

Query  370  QMLKPSELNAELYRVRRALYLDLGVPFPGIHLRFNESMKDGEYTILMHEVPVAQGRLPAD  429
              L    L +E+ + R  L +++G+ +P++ + + + ++ +E+ + + +VP+ ++ +   
Sbjct  371  SAL-VDALVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFTVYDVPMLKATFTQT  429

Query  430  KVVVLQDQEQLDILGIPHQQGELAMSANPYWVEKSHAPAMENAGIEYLDAPRLLIYHLSF  489
             V V  D  Q++  ++P   +  +   +  WV     PA + + +  + +  L+  ++  
Sbjct  430  HVAV--DVRQFNGEDVPAAISGTTDRQEDQWV---WLPAEQGGELATVSSMTLITERMER  484

Query  490  ILKRYASEFIGLQECRYLLDQMEGQYGDLVKEVQRVVPIQRIAEILQRLVSEDISIRNLR  549
             L+  +++FIGLQE + +L+ +E++  +L +E+QRV+ + R++ +LQRL SE +++R +R
Sbjct  485  ALQSCGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQRLASECVPLRAIR  544

Query  550  AIMEALVEWGQKEKDTVLLTEYVRKSLSRYISYKFCNGQNVLPAYMLDQDLEESIRGGIR  609
             I E+L+E  Q E+DT +LT+YVR +L   I  ++C G + L   +L  + E  +R+G+R
Sbjct  545  VIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYC-GADGLQVWLLTPESEGLLRDGLR  603

Query  610  QTSSGAYLALDPDTTQNFINELHREVGDLDALQHKPVLLVSMDIRRYVRKMIERDFFELC  669
            QT + +++AL  D +Q ++++LH     L A  +++VLLV+ D+R  +R ++  +F+++ 
Sbjct  604  QTQTETFFALSNDISQMLVQQLHIAFP-LRA-PEQAVLLVAQDLRSPLRTLLREEFYHVP  661

Query  670  VLSYQELTQDITVQPISR  687
            VLS+ E+++   V+ ++R
Sbjct  662  VLSFAEISNAAKVRVMGR  679

26) NH44784_014751 in NC_021285


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  371 bits (1393),  Expect = 1e-103, Method: Compositional matrix adjust.
 Identities = 298/698 (43%), Positives = 503/698 (73%), Gaps = 27/698 (3%)

Query  4    LNRVVAAATSRNDIVLAVLIVSIIFMMILPLPTTLVDVLIGANMTLSAILLMVAMYlpsp  63
            LN V  +A  R+++V A ++++I+FMMI PLPT LVDVLI+ N+ +S +L+M+AM LP P
Sbjct  8    LNMVALSAMRRSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIMLAMHLPRP  67

Query  64   lafssfpsvllvTTLFRLGISIATTRLILLQGDAGHIIETfgnfvvggnlivglvvflil  123
            LAFS+FP+VLL+TT+FRL++SI+TTRLILL+ DAGHI+E+FG+FVVGGNL VGLV+FLIL
Sbjct  68   LAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVGLVIFLIL  127

Query  124  TIVQFVVITKGAERVAEVAARFSLDAMPGKQMSIDADLRAGTIDMDEARKRRSVVEKESQ  183
            T+V+F+VITKG+ERVAEV+ARF+LDAMPGKQMSID+DLRA  I + EAR+RRS ++KESQ
Sbjct  128  TVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRSELNKESQ  187

Query  184  LYGAMDGAMKFVKGDAIAGLIIVAVNLLGGILIGTMQRGLSAGEAVQVYSILTIGDGLIA  243
            L+GAMDGAMKFV+GDAIA+LIIVA+N++GGI IG +Q+G++AG+A+Q+Y++LTIGDGLIA
Sbjct  188  LFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLTIGDGLIA  247

Query  244  QIPALFIAICAGIIVTRVQTGDGP--SNVGKDIGAQVLAQPRalliaaaiaigmglipgm  301
            QIPAL+I++  G+I+TRV   ++   +N+G++I+ Q+ +QP+A +IAA   +G + +PGM
Sbjct  248  QIPALLISVTCGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIAAVAMLGFAALPGM  307

Query  302  pTLTFLALAAVVGTIGFVLLRGTRKVVDEKTGEITEIPALAADGQKPQARPRADGSAEFA  361
            PT  F+++A + G+ G + L+ ++   +E+ G ++  P + +   K + R        F+
Sbjct  308  PTGVFITIAIICGAGGMLQLQRAKPKAEEQ-GAVAVAPEMNG---KEDLRT-------FS  356

Query  362  PTLPLMIDVAAALQRSFDADELNEELLKIRRALYFDLGVPFPGIQLRFNDALPADSYNIL  421
            P+  ++++  ++ + ++  D L  E+ + R  L  ++G+ +P++ + + D L +D + + 
Sbjct  357  PSRQFVLQFHPGQNSAL-VDALVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFT  415

Query  422  LSEVPVSQGKLRPG--AVLVRDTEQNLQALQVPYETDKRFLPNVPTLWVDAGLAPTLTAA  479
            + +VP+ ++ +     AV VR+ + +  +  ++  TD++   +   +W+ A  +  L++ 
Sbjct  416  VYDVPMLKATFTQTHVAVDVRQFNGEDVPAAISGTTDRQ---EDQWVWLPAEQGGELATV  472

Query  480  GIPFLDPHQVLTWHLAFVLKKYSSDFIGIQETRFLLTAMEDRFPDLVKEALRVMPVQKIA  539
            +   L  +     ++   L+  +++FIG+QET+ +L  +E   P+L +E  RV+ + +++
Sbjct  473  SSMTLITE-----RMERALQSCGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRFS  527

Query  540  EILQRLVSEDISVRNLRAVLEALIEWGQKEKDSVLLTEYVRVSLKRHISYKYSSGQNILP  599
             +LQRL SE +++R +R + E+LIE  Q E+D+ +LT+YVR++LK +I  +Y +++  L 
Sbjct  528  AVLQRLASECVPLRAIRVIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADG-LQ  586

Query  600  AYLLAPNVEETVRGAIRQTSAGSYLALDPNASRKLVDNIKRVAGDLTAAAQKPVLLTSMD  659
              LL+P+ E  +R+++RQT + +++AL  + S+ LV+++ ++A  L A+ Q +VLL + D
Sbjct  587  VWLLTPESEGLLRDGLRQTQTETFFALSNDISQMLVQQL-HIAFPLRAPEQ-AVLLVAQD  644

Query  660  IRRYLRKMIEQDLYELPVLSYQELTQEINVQPLARVDL  697
            +R  LR ++ +++Y++PVLS+ E+++  +V+ ++R DL
Sbjct  645  LRSPLRTLLREEFYHVPVLSFAEISNAAKVRVMGRFDL  682

27) hrcV in NC_014323


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  366 bits (1374),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 299/698 (43%), Positives = 501/698 (72%), Gaps = 27/698 (3%)

Query  6    IVMLLNKFAIQLGKRAELLAAALVIGIVFMLVLPMPIWLLDILIAMSLCASGLIVVVAMY  65
            I+ +LN  A+   +R+E+++A +VI+IVFM++ P+P  L+D+LIA+++C S L++++AM 
Sbjct  4    IINFLNMVALSAMRRSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIMLAMH  63

Query  66   MAGPTAFSTFPAVLLLTTLFRLAISVSTTRLILLEADAGHIVEtfgnfvvggnlvvglvi  125
            ++ P AFSTFPAVLLLTT+FRLA+S+STTRLILL+ DAGHIVE+FG+FVVGGNL VGLVI
Sbjct  64   LPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVGLVI  123

Query  126  fliltvvQFIVITKGSERVSEVSARFSLDAMPGKQMSIDSDLRAGILTPEEAKAKRAHLG  185
            FLILTVV+F+VITKGSERV+EV+ARF+LDAMPGKQMSIDSDLRA +++  EA+ +R++L 
Sbjct  124  FLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRSELN  183

Query  186  QESQLHGAMDGAMKFVKGDAIAGICIVAINLiggisigiiQRGMDAGQAMQVYSILSIGD  245
            +ESQL GAMDGAMKFV+GDAIA++ IVAIN+IGGISIG++Q+GM AG+A+Q+Y++L+IGD
Sbjct  184  KESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLTIGD  243

Query  246  ALIAQIPALLISLGAGIITTRVSDDNEEGETNIGRDIVGELFGEPKALLTAAGIMLLFGL  305
            +LIAQIPALLIS+  G+I TRV++ +   E+NIGR+I  ++ ++PKA + AA  ML F+ 
Sbjct  244  GLIAQIPALLISVTCGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIAAVAMLGFAA  303

Query  306  IPGMPTVIFvalavglcvagvvgmlKPLADAEMARESEELERKNAGIVDLTSFAATTPFI  365
            +PGMPT +F+++A+    +G++ + ++ + AE  + +  +     G  DL +F+++  F+
Sbjct  304  LPGMPTGVFITIAIICGAGGMLQLQRAKPKAE-EQGAVAVAPEMNGKEDLRTFSPSRQFV  362

Query  366  LRMNESMRGKAEAEVIRTAVRIMRNAMLERRGIPDLKPIDFEFSSMVPEGRVFFMMSEVP  425
            L+ + + +  A  + + + +R  RN ++ + G+  L ++ +E+   +  +   F + +VP
Sbjct  363  LQFHPG-QNSALVDALVSEIRQRRNRLVVQFGLT-LPSFIIEYVDHLQPDEFRFTVYDVP  420

Query  426  LVDAEIMLGWSATRESLERVQELGFQGFERNIPGSRRRR----VWVKTEDPEKLAEAG--  479
            ++ A      + T+ +++ V+++  ++    I+G+  R+    VW+ +E+   LA  +  
Sbjct  421  MLKA----TFTQTHVAVD-VRQFNGEDVPAAISGTTDRQEDQWVWLPAEQGGELATVSSM  475

Query  480  -LLAESWEKVFASDIEVEMLRNC-QMFVGVNEVIRFTRWAERRYPELGKEVVKTVTLPRL  537
             L++E  E+          L++C   F+G++E   +  W E   PEL++E+ + +TL R+
Sbjct  476  TLITERMERA---------LQSCGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRF  526

Query  538  TEVVQRLTREGVSLRNARLLLETTLDWAPKERDPDVIADYVRLAFKRQLCFEASREGLIE  597
            + V+QRL+ E V+LR  R++ ET ++    ERD +V++DYVR+A+K Q+  +    + ++
Sbjct  527  SAVLQRLASECVPLRAIRVIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADGLQ  586

Query  598  VILLSPELEDQLRNAMRQTSQGSYLDIDSELEQMILDRLNELSTNVSTPIVPPVLVTAAD  657
            V LL+PE E+ LR+++RQT   +++ + +++ QM++++L+ ++  + +P   +VL+ A D
Sbjct  587  VWLLTPESEGLLRDGLRQTQTETFFALSNDISQMLVQQLH-IAFPLRAP-EQAVLLVAQD  644

Query  658  IRRSVRKLIeeeffpvpvfAFSELTQHAKVKPVGMIEV  695
            +R ++R L+ EEF+ VPV++F+E+++ AKV+ +G +++
Sbjct  645  LRSPLRTLLREEFYHVPVLSFAEISNAAKVRVMGRFDL  682

28) yscV in NC_016642


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  353 bits (1327),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 284/708 (41%), Positives = 486/708 (69%), Gaps = 42/708 (5%)

Query  3    QRNDVLLAFLLIAIVFMMILPLPTVLVDTliainlslaaillmaalylKDVVALSAFPsi  62
            +R++V+ AF++IAIVFMMI PLPT LVD LIA+N+ ++ +L+M A+ L   +A+S+FP++
Sbjct  17   RRSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIMLAMHLPRPLAFSTFPAV  76

Query  63   lllttlfrlslsitttrlillKADAGEIIDTFGNFVVQGNLVVGIVIFLILTIVNFLVIT  122
            LLLTT+FRL+LSI+TTRLILL+ DAG+I+++FG+FVV GNL VG+VIFLILT+VNFLVIT
Sbjct  77   LLLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVGLVIFLILTVVNFLVIT  136

Query  123  KGSERVAEVSARFSLDAMPGKQMSIDSDMRAGQIELDEAKRRRSKLEKESQLYGSMDGAM  182
            KGSERVAEV+ARF+LDAMPGKQMSIDSD+RA  I + EA+ RRS L+KESQL+G+MDGAM
Sbjct  137  KGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRSELNKESQLFGAMDGAM  196

Query  183  KFVKGDAIAGLIITAVNIIGGVIIGTSQHGMSAVDALDRYTILTIGDGLVAQIPALFISI  242
            KFV+GDAIA+LII A+N+IGG+ IG  QHGM+A DAL+ YT+LTIGDGL+AQIPAL+IS+
Sbjct  197  KFVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLTIGDGLIAQIPALLISV  256

Query  243  TAGFMVTRVSTDDS---SDLGSDIAKQLNGEPKALMIAAAIMVGFALIPGFPSVIFLLLA  299
            T G ++TRV+  ++   +++G +IA Q+ ++PKA +IAA  M+GFA +PG P+ +F+ +A
Sbjct  257  TCGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIAAVAMLGFAALPGMPTGVFITIA  316

Query  300  AIFGSIAYFAMRRTKTQSAKKDSQQLSAFAPAIAPEGEAQMMPDEDMATEVEAAQDLAIT  359
             I G+ + + ++R+K ++  ++       A A+APE    M   ED+ T         ++
Sbjct  317  IICGAGGMLQLQRAKPKAEEQG-------AVAVAPE----MNGKEDLRT---------FS  356

Query  360  ITVPLIVDISSSVRSTLNPKKLDREVAKVRKALYFDLGVPFPGIKLRLNESLPEGEYRIL  419
             +  +++++ ++  S+L    L  E+ + R+ L  ++G+ +P++ +   + L  +E+R+ 
Sbjct  357  PSRQFVLQFHPGQNSAL-VDALVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFT  415

Query  420  VNEVPVARGAARSGYFIARETPPNLAMFN---IPYE-EGDSFLPNTPSFWVSNRHFEQAT  475
            V +VP+ +++     F   + + ++  FN   +P    G +   +    W++    EQ+ 
Sbjct  416  VYDVPMLKAT-----FTQTHVAVDVRQFNGEDVPAAISGTTDRQEDQWVWLPA---EQG-  466

Query  476  RAGIQTLTLTGMLSLHLAHVLKQHAAEFLGIQECMFLLKHMESDFDELVREVNRAVPLIS  535
             + + T++   +++ ++ + L+  +++F+G+QE   +L  +ES+  EL +E++R + L  
Sbjct  467  -GELATVSSMTLITERMERALQSCGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTR  525

Query  536  LADVLKRLVREDISIRDMRTILQAIVEWGQKEKDPLMLTEHIRMALSRYITHKYSAGQHI  595
            ++ VL+RL  E +++R +R I ++++E  Q E+D  +LT+ +R+AL   I H+Y +++  
Sbjct  526  FSAVLQRLASECVPLRAIRVIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADG-  584

Query  596  IPAYLIDKDIEDEVRGAIRQTSGASYLALSPDTHRQLITVMRSAIGDNLAHNGIAPVILV  655
            +   L+  + E+ +R+++RQT   +++ALS D  + L+  ++ A+     +    +V+LV
Sbjct  585  LQVWLLTPESEGLLRDGLRQTQTETFFALSNDISQMLVQQLHIAFP---LRAPEQAVLLV  641

Query  656  PMDIRRFFRKVIERDYADLAVLSFQELAPNANIQPLEKISLRGKVGTL  703
            + D+R  +R ++  ++ +++VLSF E++  A+++ + ++ L + +  +
Sbjct  642  AQDLRSPLRTLLREEFYHVPVLSFAEISNAAKVRVMGRFDLEDDLEPM  689

29) M892_04485 in NC_022269


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  351 bits (1319),  Expect = 8e-98, Method: Compositional matrix adjust.
 Identities = 289/713 (41%), Positives = 496/713 (70%), Gaps = 45/713 (6%)

Query  1    MNKLIDILNKVG----QRKDIMLAVMLLAIVFMMILPLPTALVDVLIGTNMSIAVVLLML  56
            MN++I++LN V+    +R +++ A  ++AIVFMMI PLPT+LVDVLI+ N+ I+ +L+ML
Sbjct  1    MNQIINFLNMVALSAMRRSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIML  60

Query  57   AIYITKPLEFSAFPAVllittlfrlslsitttrlillQGDAGQIVYtfgnfvvggnlvvg  116
            A+ + +PL FS+FPAVLL+TT+FRL+LSI+TTRLILL+ DAG+IV +FG+FVVGGNL VG
Sbjct  61   AMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVG  120

Query  117  ivvfliitivQFMVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVHEARHRRS  176
            +V+FLI+T+V+F+VITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +I V EAR+RRS
Sbjct  121  LVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRS  180

Query  177  LIEKESQMYGSMDGAMKFVKGDSIAgliiivvnilggvtigvtQKGMSASEALELFAILT  236
             ++KESQ++G+MDGAMKFV+GD+IA+LII+ +N++GG++IGV Q GM+A++AL+L+++LT
Sbjct  181  ELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLT  240

Query  237  VGDGLVSQIPALFIAITAGIIVTRVSNEDS---SDLGSDIGGQVTAQPRALLVGGVLLIL  293
            +GDGL++QIPAL+I++T G+I+TRV+N ++   +++G +I+ Q+T+QP+A ++++V ++ 
Sbjct  241  IGDGLIAQIPALLISVTCGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIAAVAMLG  300

Query  294  FALIPGFPKVTFLILAAIVGGGGFFLFYQQKKQSEYDSSDLPSFVAQGAGSPAAKPNKPT  353
            FA +PG P   F+ +A I G+GG + + + K ++E           QGA + A       
Sbjct  301  FAALPGMPTGVFITIAIICGAGGMLQLQRAKPKAE----------EQGAVAVA-------  343

Query  354  PSRNSKGKLGEQEEFAMTVPLLIDLDSRLQESLEAVALNDELARVRRALYLDLGVPFPGI  413
            P  N+K  L     F+ +  +++++++  + +L   AL  E+ + R  L +++G+ +P++
Sbjct  344  PEMNGKEDL---RTFSPSRQFVLQFHPGQNSALVD-ALVSEIRQRRNRLVVQFGLTLPSF  399

Query  414  HLRFNEGMSNGEYLIQLQEVPVARGRIESEKLLVT----EGNEQIDLLGVPYEKDDDFLP  469
             + + + +  +E+ + + +VP+ ++ +    + V     +G++    ++   ++++D   
Sbjct  400  IIEYVDHLQPDEFRFTVYDVPMLKATFTQTHVAVDVRQFNGEDVPAAISGTTDRQED---  456

Query  470  GITSIWVDQSHHEKLQNSHVGFLTPDRILTYHLSHVLKEYAQDFIGIQETRYLLEQMESS  529
                +W+   +   L       L  +R     + + L+  + +FIG+QET+ +L  +ES 
Sbjct  457  --QWVWLPAEQGGELATVSSMTLITER-----MERALQSCGPQFIGLQETKAILGWLESE  509

Query  530  YSELVKEAQRIVPLQKMTEILQRLVSEDISIRNLRVILEAMVEWGQKEKDVVQLTEYIRS  589
             +EL +E QR++ L + + +LQRL SE +++R +RVI E+++E  Q E+D   LT+Y+R 
Sbjct  510  QPELAQEMQRVLTLTRFSAVLQRLASECVPLRAIRVIAETLIEHCQHERDTNVLTDYVRI  569

Query  590  SLKRYICYKYASGQNMLPAYLLDQSLEDTIRNGIRQTSAGSYLALDPSVTQQFVSDVKQT  649
            +LK  I  +Y  G + L   LL    E+ +R+G+RQT + +++AL   ++Q +V ++  +
Sbjct  570  ALKSQIYHQY-CGADGLQVWLLTPESEGLLRDGLRQTQTETFFALSNDISQMLVQQLHIA  628

Query  650  IGDLSRMPNKPVLVVSMDVRRYVRKLIESEYYELPVLSFQELTQQINIQPLGR  702
            +    R P+++VL+V+ D+R  +R L+  E+Y++PVLSF E+++  +++ +GR
Sbjct  629  FP--LRAPEQAVLLVAQDLRSPLRTLLREEFYHVPVLSFAEISNAAKVRVMGR  679

30) VIBHAR_01736 in NC_009783


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  351 bits (1319),  Expect = 8e-98, Method: Compositional matrix adjust.
 Identities = 289/713 (41%), Positives = 496/713 (70%), Gaps = 45/713 (6%)

Query  1    MNKLIDILNKVG----QRKDIMLAVMLLAIVFMMILPLPTALVDVLIGTNMSIAVVLLML  56
            MN++I++LN V+    +R +++ A  ++AIVFMMI PLPT+LVDVLI+ N+ I+ +L+ML
Sbjct  1    MNQIINFLNMVALSAMRRSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIML  60

Query  57   AIYITKPLEFSAFPAVllittlfrlslsitttrlillQGDAGQIVYtfgnfvvggnlvvg  116
            A+ + +PL FS+FPAVLL+TT+FRL+LSI+TTRLILL+ DAG+IV +FG+FVVGGNL VG
Sbjct  61   AMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVG  120

Query  117  ivvfliitivQFMVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVHEARHRRS  176
            +V+FLI+T+V+F+VITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +I V EAR+RRS
Sbjct  121  LVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRS  180

Query  177  LIEKESQMYGSMDGAMKFVKGDSIAgliiivvnilggvtigvtQKGMSASEALELFAILT  236
             ++KESQ++G+MDGAMKFV+GD+IA+LII+ +N++GG++IGV Q GM+A++AL+L+++LT
Sbjct  181  ELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLT  240

Query  237  VGDGLVSQIPALFIAITAGIIVTRVSNEDS---SDLGSDIGGQVTAQPRALLVGGVLLIL  293
            +GDGL++QIPAL+I++T G+I+TRV+N ++   +++G +I+ Q+T+QP+A ++++V ++ 
Sbjct  241  IGDGLIAQIPALLISVTCGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIAAVAMLG  300

Query  294  FALIPGFPKVTFLILAAIVGGGGFFLFYQQKKQSEYDSSDLPSFVAQGAGSPAAKPNKPT  353
            FA +PG P   F+ +A I G+GG + + + K ++E           QGA + A       
Sbjct  301  FAALPGMPTGVFITIAIICGAGGMLQLQRAKPKAE----------EQGAVAVA-------  343

Query  354  PSRNSKGKLGEQEEFAMTVPLLIDLDSRLQESLEAVALNDELARVRRALYLDLGVPFPGI  413
            P  N+K  L     F+ +  +++++++  + +L   AL  E+ + R  L +++G+ +P++
Sbjct  344  PEMNGKEDL---RTFSPSRQFVLQFHPGQNSALVD-ALVSEIRQRRNRLVVQFGLTLPSF  399

Query  414  HLRFNEGMSNGEYLIQLQEVPVARGRIESEKLLVT----EGNEQIDLLGVPYEKDDDFLP  469
             + + + +  +E+ + + +VP+ ++ +    + V     +G++    ++   ++++D   
Sbjct  400  IIEYVDHLQPDEFRFTVYDVPMLKATFTQTHVAVDVRQFNGEDVPAAISGTTDRQED---  456

Query  470  GITSIWVDQSHHEKLQNSHVGFLTPDRILTYHLSHVLKEYAQDFIGIQETRYLLEQMESS  529
                +W+   +   L       L  +R     + + L+  + +FIG+QET+ +L  +ES 
Sbjct  457  --QWVWLPAEQGGELATVSSMTLITER-----MERALQSCGPQFIGLQETKAILGWLESE  509

Query  530  YSELVKEAQRIVPLQKMTEILQRLVSEDISIRNLRVILEAMVEWGQKEKDVVQLTEYIRS  589
             +EL +E QR++ L + + +LQRL SE +++R +RVI E+++E  Q E+D   LT+Y+R 
Sbjct  510  QPELAQEMQRVLTLTRFSAVLQRLASECVPLRAIRVIAETLIEHCQHERDTNVLTDYVRI  569

Query  590  SLKRYICYKYASGQNMLPAYLLDQSLEDTIRNGIRQTSAGSYLALDPSVTQQFVSDVKQT  649
            +LK  I  +Y  G + L   LL    E+ +R+G+RQT + +++AL   ++Q +V ++  +
Sbjct  570  ALKSQIYHQY-CGADGLQVWLLTPESEGLLRDGLRQTQTETFFALSNDISQMLVQQLHIA  628

Query  650  IGDLSRMPNKPVLVVSMDVRRYVRKLIESEYYELPVLSFQELTQQINIQPLGR  702
            +    R P+++VL+V+ D+R  +R L+  E+Y++PVLSF E+++  +++ +GR
Sbjct  629  FP--LRAPEQAVLLVAQDLRSPLRTLLREEFYHVPVLSFAEISNAAKVRVMGR  679

31) bcrD in NC_018829


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  347 bits (1302),  Expect = 2e-96, Method: Compositional matrix adjust.
 Identities = 284/668 (43%), Positives = 475/668 (72%), Gaps = 19/668 (2%)

Query  34   FMMILPLPTTLVDVLIGANMTLSAVLLMVAMYlpsplafssfpsvllvTTLFRLGISIAT  93
            FMMI PLPT LVDVLI+ N+ +S +L+M+AM LP PLAFS+FP+VLL+TT+FRL++SI+T
Sbjct  32   FMMITPLPTGLVDVLIAVNICISCLLIMLAMHLPRPLAFSTFPAVLLLTTMFRLALSIST  91

Query  94   TRLILLQGDAGHIIETfgnfvvggnlivglvvflilTIVQFVVITKGAERVAEVAARFSL  153
            TRLILL+ DAGHI+E+FG+FVVGGNL VGLV+FLILT+V+F+VITKG+ERVAEV+ARF+L
Sbjct  92   TRLILLNQDAGHIVEAFGQFVVGGNLAVGLVIFLILTVVNFLVITKGSERVAEVGARFTL  151

Query  154  DAMPGKQMSIDADLRAGTIDMDEARRRRRTVEKESQLYGAMDGAMKFVKGDAIAGLIIva  213
            DAMPGKQMSID+DLRA  I + EAR RR  ++KESQL+GAMDGAMKFV+GDAIA+LIIVA
Sbjct  152  DAMPGKQMSIDSDLRANLISVYEARNRRSELNKESQLFGAMDGAMKFVNGDAIASLIIVA  211

Query  214  vnllggmlvgvlqrglSAGEAVQTYAILTIGDGLIAQIPALFIAICAGIIVTRVQTGDSP  273
            +N++GG+ +GV+Q+G++AG+A+Q Y++LTIGDGLIAQIPAL+I++  G+I+TRV   ++ 
Sbjct  212  INMIGGISIGVVQHGMTAGDALQLYTVLTIGDGLIAQIPALLISVTCGMIITRVPNTEAG  271

Query  274  --SNVGTDIGAQVLAQPRALVIAGAISAGLGLIPGMPTLVFFALAAVVGTIGFVLLRASQ  331
              +N+G +I+ Q+ +QP+A +IA+    G++ +PGMPT VF+++A + G+ G  +L+  +
Sbjct  272  VEANIGREIAEQITSQPKAWIIAAVAMLGFAALPGMPTGVFITIAIICGAGG--MLQLQR  329

Query  332  RPPEGAEPALAGMAADGQPRTRAPADGQAEFAPTVPLIIDVAARLQPRFEPATLTDDLLQ  391
              P + E +  ++A++ + +     ++   F+P+  ++++  +  ++ +   +L  ++ Q
Sbjct  330  AKPKAEEQGAVAVAPEMNGK-----EDLRTFSPSRQFVLQFHPGQNSAL-VDALVSEIRQ  383

Query  392  IRRALYFDLGVPFPGIQLRFTEALAANTYTIVLSEIPVAQGMLRDDAVLVRDTEQNLQAL  451
             R  L  ++G+ +P++ + + + L ++ + + + ++P+ ++ + +  V V   + N + +
Sbjct  384  RRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFTVYDVPMLKATFTQTHVAVDVRQFNGEDV  443

Query  452  RIAYETGAAFLPDTPTIWVAASLTGALRDAGIPYLGISQILTWHLAYVLKKYSADFIGIQ  511
              A  +G++   +   +W++A   G L   +   L I++    ++   L+  +++FIG+Q
Sbjct  444  PAAI-SGTTDRQEDQWVWLPAEQGGELATVSSMTL-ITE----RMERALQSCGPQFIGLQ  497

Query  512  ETRFLLSAMEERFPDLVKECLRVMPVQKIAEILQRLVSEEVSIRNLRAVLEALVEWGQKE  571
            ET+ +L+ +E   P+L +E  RV+ + +++ +LQRL SE V++R +R + E+L+E  Q E
Sbjct  498  ETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQRLASECVPLRAIRVIAETLIEHCQHE  557

Query  572  KDTVLLTEYVRIALKRYISHKYTSGHNILPAYLLAPKVEETVRAAIRQTAAGSYLALDPD  631
            +DT +LT+YVRIALK  I H+Y  G + L   LL+P  E  +R ++RQT + +++AL  D
Sbjct  558  RDTNVLTDYVRIALKSQIYHQY-CGADGLQVWLLTPESEGLLRDGLRQTQTETFFALSND  616

Query  632  TTRRLVEHIRQCVGDLAAGASRPVLLTSMDIRRYTRKMIEADLYALPVLSYQELTPEINV  691
             ++ LV++++  ++    ++ ++VLL + D+R   R ++  ++Y +PVLS+ E++   +V
Sbjct  617  ISQMLVQQLH--IAFPLRAPEQAVLLVAQDLRSPLRTLLREEFYHVPVLSFAEISNAAKV  674

Query  692  QPLGRVDL  699
            + +GR DL
Sbjct  675  RVMGRFDL  682

32) bcrD in NC_019382


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  345 bits (1295),  Expect = 6e-96, Method: Compositional matrix adjust.
 Identities = 284/668 (43%), Positives = 472/668 (71%), Gaps = 19/668 (2%)

Query  34   FMMILPLPTTLVDVLIGANMTLSAVLLMVAMYlpsplafssfpsvllvTTLFRLGISIAT  93
            FMMI PLPT LVDVLI+ N+ +S +L+M+AM LP PLAFS+FP+VLL+TT+FRL++SI+T
Sbjct  32   FMMITPLPTGLVDVLIAVNICISCLLIMLAMHLPRPLAFSTFPAVLLLTTMFRLALSIST  91

Query  94   TRLILLQGDAGHIIETfgnfvvggnlivglvvflilTIVQFVVITKGAERVAEVAARFSL  153
            TRLILL+ DAGHI+E+FG+FVVGGNL VGLV+FLILT+V+F+VITKG+ERVAEV+ARF+L
Sbjct  92   TRLILLNQDAGHIVEAFGQFVVGGNLAVGLVIFLILTVVNFLVITKGSERVAEVGARFTL  151

Query  154  DAMPGKQMSIDADLRAGTIDMDEARRRRRTVEKESQLYGAMDGAMKFVKGDAIAGLIIva  213
            DAMPGKQMSID+DLRA  I + EAR RR  ++KESQL+GAMDGAMKFV+GDAIA+LIIVA
Sbjct  152  DAMPGKQMSIDSDLRANLISVYEARNRRSELNKESQLFGAMDGAMKFVNGDAIASLIIVA  211

Query  214  vnllggmlvgvlqrglSAGEAVQTYAILTIGDGLIAQIPALFIAICAGIIVTRVQTGDG-  272
            +N++GG+ +GV+Q+G++AG+A+Q Y++LTIGDGLIAQIPAL+I++  G+I+TRV   ++ 
Sbjct  212  INMIGGISIGVVQHGMTAGDALQLYTVLTIGDGLIAQIPALLISVTCGMIITRVPNTEAG  271

Query  273  -PSNVGTDIGAQVLAQPRALVIAGAISAGLGLIPGMPTLVFFALAAVVGTIGFVLLRASQ  331
              +N+G +I+ Q+ +QP+A +IA+    G++ +PGMPT VF+++A + G+ G + L+ ++
Sbjct  272  VEANIGREIAEQITSQPKAWIIAAVAMLGFAALPGMPTGVFITIAIICGAGGMLQLQRAK  331

Query  332  RPPEGAGPALAGMAADGQPRTRAPADGQAEFAPTVPLIIDVAARLQPRFEPATLTDDLLQ  391
              +E  G+   +   +G+   R+       F+P+  ++++  +  ++ +   +L  ++ Q
Sbjct  332  PKAEEQGAVAVAPEMNGKEDLRT-------FSPSRQFVLQFHPGQNSAL-VDALVSEIRQ  383

Query  392  IRRALYFDLGVPFPGIQLRFTEALAANTYTIVLSEIPVAQGMLRDDAVLVRDTEQNLQAL  451
             R  L  ++G+ +P++ + + + L ++ + + + ++P+ ++ + +  V V   + N + +
Sbjct  384  RRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFTVYDVPMLKATFTQTHVAVDVRQFNGEDV  443

Query  452  RIAYETGAAFLPDTPTIWVAASLTGALRDAGIPYLGISQILTWHLAYVLKKYSADFIGIQ  511
              A  +G++   +   +W++A   G L   +   L I++    ++   L+  +++FIG+Q
Sbjct  444  PAAI-SGTTDRQEDQWVWLPAEQGGELATVSSMTL-ITE----RMERALQSCGPQFIGLQ  497

Query  512  ETRFLLSAMEERFPDLVKECLRVMPVQKIAEILQRLVSEEVSIRNLRAVLEALVEWGQKE  571
            ET+ +L+ +E   P+L +E  RV+ + +++ +LQRL SE V++R +R + E+L+E  Q E
Sbjct  498  ETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQRLASECVPLRAIRVIAETLIEHCQHE  557

Query  572  KDTVLLTEYVRIALKRYISYKYTSGHNILPAYLLAPKVEETVRAAIRQTAAGSYLALDPD  631
            +DT +LT+YVRIALK  I  +Y  G + L   LL+P  E  +R ++RQT + +++AL  D
Sbjct  558  RDTNVLTDYVRIALKSQIYHQY-CGADGLQVWLLTPESEGLLRDGLRQTQTETFFALSND  616

Query  632  TTRRLVEHIRQCVGDLAAGASRPVLLTSMDIRRYTRKMIEADLYALPVLSYQELTPEINV  691
             ++ LV++++  ++    ++ ++VLL + D+R   R ++  ++Y +PVLS+ E++   +V
Sbjct  617  ISQMLVQQLH--IAFPLRAPEQAVLLVAQDLRSPLRTLLREEFYHVPVLSFAEISNAAKV  674

Query  692  QPLGRVDL  699
            + +GR DL
Sbjct  675  RVMGRFDL  682

33) bcrD in NC_018828


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  345 bits (1295),  Expect = 7e-96, Method: Compositional matrix adjust.
 Identities = 284/668 (43%), Positives = 471/668 (71%), Gaps = 19/668 (2%)

Query  34   FMMILPLPTTLVDVLIGANMTLSAVLLMVAMYlpsplafssfpsvllvTTLFRLGISIAT  93
            FMMI PLPT LVDVLI+ N+ +S +L+M+AM LP PLAFS+FP+VLL+TT+FRL++SI+T
Sbjct  32   FMMITPLPTGLVDVLIAVNICISCLLIMLAMHLPRPLAFSTFPAVLLLTTMFRLALSIST  91

Query  94   TRLILLQGDAGHIIETfgnfvvggnlivglvvflilTIVQFVVITKGAERVAEVAARFSL  153
            TRLILL+ DAGHI+E+FG+FVVGGNL VGLV+FLILT+V+F+VITKG+ERVAEV+ARF+L
Sbjct  92   TRLILLNQDAGHIVEAFGQFVVGGNLAVGLVIFLILTVVNFLVITKGSERVAEVGARFTL  151

Query  154  DAMPGKQMSIDADLRAGTIDMDEARRRRRTVEKESQLYGAMDGAMKFVKGDAIAGLIIva  213
            DAMPGKQMSID+DLRA  I + EAR RR  ++KESQL+GAMDGAMKFV+GDAIA+LIIVA
Sbjct  152  DAMPGKQMSIDSDLRANLISVYEARNRRSELNKESQLFGAMDGAMKFVNGDAIASLIIVA  211

Query  214  vnllggmlvgvlqrglSAGEAVQTYAILTIGDGLIAQIPALFIAICAGIIVTRVQTGDG-  272
            +N++GG+ +GV+Q+G++AG+A+Q Y++LTIGDGLIAQIPAL+I++  G+I+TRV   ++ 
Sbjct  212  INMIGGISIGVVQHGMTAGDALQLYTVLTIGDGLIAQIPALLISVTCGMIITRVPNTEAG  271

Query  273  -PSNVGTDIGAQVLAQPRALVIAGAISAGLGLIPGMPTLVFFALAAVVGTIGFVLLRASQ  331
              +N+G +I+ Q+ +QP+A +IA+    G++ +PGMPT VF+++A + G+ G + L+ ++
Sbjct  272  VEANIGREIAEQITSQPKAWIIAAVAMLGFAALPGMPTGVFITIAIICGAGGMLQLQRAK  331

Query  332  RPPEGAGPALAGMAADGQPRTRAPADGQAEFAPTVPLIIDVAARLQPRFEPATLTDDLLQ  391
              +E  G+   +   +G+   R+       F+P+  ++++  +  ++ +   +L  ++ Q
Sbjct  332  PKAEEQGAVAVAPEMNGKEDLRT-------FSPSRQFVLQFHPGQNSAL-VDALVSEIRQ  383

Query  392  IRRALYFDLGVPFPGIQLRFTEALAANTYTIVLSEIPVAQGMLRDDAVLVRDTEQNLQAL  451
             R  L  ++G+ +P++ + + + L ++ + + + ++P+ ++ + +  V V   + N + +
Sbjct  384  RRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFTVYDVPMLKATFTQTHVAVDVRQFNGEDV  443

Query  452  RIAYETGAAFLPDTPTIWVTASLTGALRDAGIPYLGISQILTWHLAYVLKKYSADFIGIQ  511
              A  +G++   +   +W+ A   G L   +   L I++    ++   L+  +++FIG+Q
Sbjct  444  PAAI-SGTTDRQEDQWVWLPAEQGGELATVSSMTL-ITE----RMERALQSCGPQFIGLQ  497

Query  512  ETRFLLSAMEERFPDLVKECLRVMPVQKIAEILQRLVSEEVSIRNLRAVLEALVEWGQKE  571
            ET+ +L+ +E   P+L +E  RV+ + +++ +LQRL SE V++R +R + E+L+E  Q E
Sbjct  498  ETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQRLASECVPLRAIRVIAETLIEHCQHE  557

Query  572  KDTVLLTEYVRIALKRYISYKYTSGHNILPAYLLAPKVEETVRAAIRQTAAGSYLALDPD  631
            +DT +LT+YVRIALK  I  +Y  G + L   LL+P  E  +R ++RQT + +++AL  D
Sbjct  558  RDTNVLTDYVRIALKSQIYHQY-CGADGLQVWLLTPESEGLLRDGLRQTQTETFFALSND  616

Query  632  TTRRLVEHIRQCVGDLAAGASRPVLLTSMDIRRYTRKMIEADLYALPVLSYQELTPEINV  691
             ++ LV++++  ++    ++ ++VLL + D+R   R ++  ++Y +PVLS+ E++   +V
Sbjct  617  ISQMLVQQLH--IAFPLRAPEQAVLLVAQDLRSPLRTLLREEFYHVPVLSFAEISNAAKV  674

Query  692  QPLGRVDL  699
            + +GR DL
Sbjct  675  RVMGRFDL  682

34) bcrD in NC_017223


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  345 bits (1295),  Expect = 7e-96, Method: Compositional matrix adjust.
 Identities = 284/668 (43%), Positives = 474/668 (71%), Gaps = 19/668 (2%)

Query  34   FMMILPLPTTLVDVLIGANMTLSAVLLMVAMYlpsplafssfpsvllvTTLFRLGISIAT  93
            FMMI PLPT LVDVLI+ N+ +S +L+M+AM LP PLAFS+FP+VLL+TT+FRL++SI+T
Sbjct  32   FMMITPLPTGLVDVLIAVNICISCLLIMLAMHLPRPLAFSTFPAVLLLTTMFRLALSIST  91

Query  94   TRLILLQGDAGHIIETfgnfvvggnlivglvvflilTIVQFVVITKGAERVAEVAARFSL  153
            TRLILL+ DAGHI+E+FG+FVVGGNL VGLV+FLILT+V+F+VITKG+ERVAEV+ARF+L
Sbjct  92   TRLILLNQDAGHIVEAFGQFVVGGNLAVGLVIFLILTVVNFLVITKGSERVAEVGARFTL  151

Query  154  DAMPGKQMSIDADLRAGTIDMDEARRRRRTVEKESQLYGAMDGAMKFVKGDAIAGLIIva  213
            DAMPGKQMSID+DLRA  I + EAR RR  ++KESQL+GAMDGAMKFV+GDAIA+LIIVA
Sbjct  152  DAMPGKQMSIDSDLRANLISVYEARNRRSELNKESQLFGAMDGAMKFVNGDAIASLIIVA  211

Query  214  vnllggmlvgvlqrglSAGEAVQTYAILTIGDGLIAQIPALFIAICAGIIVTRVQTGDGP  273
            +N++GG+ +GV+Q+G++AG+A+Q Y++LTIGDGLIAQIPAL+I++  G+I+TRV   ++ 
Sbjct  212  INMIGGISIGVVQHGMTAGDALQLYTVLTIGDGLIAQIPALLISVTCGMIITRVPNTEAG  271

Query  274  --SNVGTDIGAQVLAQPRALVIAGAISAGLGLIPGMPTLVFFALAAAVGTIGFVLLRASQ  331
              +N+G +I+ Q+ +QP+A +IA+    G++ +PGMPT VF+++A   G+ G  +L+  +
Sbjct  272  VEANIGREIAEQITSQPKAWIIAAVAMLGFAALPGMPTGVFITIAIICGAGG--MLQLQR  329

Query  332  RPPEGAEPALAGMAADGQPRTRAPADGQAEFAPTVPLIIDVAARLQPRFEPATLTDDLLQ  391
              P + E +  ++A++ + +     ++   F+P+  ++++  +  ++ +   +L  ++ Q
Sbjct  330  AKPKAEEQGAVAVAPEMNGK-----EDLRTFSPSRQFVLQFHPGQNSAL-VDALVSEIRQ  383

Query  392  IRRALYFDLGVPFPGIQLRFTEALAANTYTIVLSEIPVAQGMLRDDAVLVRDTEQNLQAL  451
             R  L  ++G+ +P++ + + + L ++ + + + ++P+ ++ + +  V V   + N + +
Sbjct  384  RRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFTVYDVPMLKATFTQTHVAVDVRQFNGEDV  443

Query  452  RIAYETGAAFLPDTPTIWVAASLTGALRDAGIPYLGISQILTWHLAYVLKKYSADFIGIQ  511
              A  +G++   +   +W++A   G L   +   L I++    ++   L+  +++FIG+Q
Sbjct  444  PAAI-SGTTDRQEDQWVWLPAEQGGELATVSSMTL-ITE----RMERALQSCGPQFIGLQ  497

Query  512  ETRFLLSAMEERFPDLVKECLRVMPVQKIAEILQRLVSEEVSIRNLRAVLEALVEWGQKE  571
            ET+ +L+ +E   P+L +E  RV+ + +++ +LQRL SE V++R +R + E+L+E  Q E
Sbjct  498  ETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQRLASECVPLRAIRVIAETLIEHCQHE  557

Query  572  KDTVLLTEYVRIALKRYISHKYTSGHNILPAYLLAPKVEETVRAAIRQTAAGSYLALDPD  631
            +DT +LT+YVRIALK  I H+Y  G + L   LL+P  E  +R ++RQT + +++AL  D
Sbjct  558  RDTNVLTDYVRIALKSQIYHQY-CGADGLQVWLLTPESEGLLRDGLRQTQTETFFALSND  616

Query  632  TTRRLVEHIRQCVGDLAAGASRPVLLTSMDIRRYTRKMIEADLYALPVLSYQELTPEINV  691
             ++ LV++++  ++    ++ ++VLL + D+R   R ++  ++Y +PVLS+ E++   +V
Sbjct  617  ISQMLVQQLH--IAFPLRAPEQAVLLVAQDLRSPLRTLLREEFYHVPVLSFAEISNAAKV  674

Query  692  QPLGRVDL  699
            + +GR DL
Sbjct  675  RVMGRFDL  682

35) bcrD in NC_002929


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  345 bits (1295),  Expect = 7e-96, Method: Compositional matrix adjust.
 Identities = 284/668 (43%), Positives = 474/668 (71%), Gaps = 19/668 (2%)

Query  34   FMMILPLPTTLVDVLIGANMTLSAVLLMVAMYlpsplafssfpsvllvTTLFRLGISIAT  93
            FMMI PLPT LVDVLI+ N+ +S +L+M+AM LP PLAFS+FP+VLL+TT+FRL++SI+T
Sbjct  32   FMMITPLPTGLVDVLIAVNICISCLLIMLAMHLPRPLAFSTFPAVLLLTTMFRLALSIST  91

Query  94   TRLILLQGDAGHIIETfgnfvvggnlivglvvflilTIVQFVVITKGAERVAEVAARFSL  153
            TRLILL+ DAGHI+E+FG+FVVGGNL VGLV+FLILT+V+F+VITKG+ERVAEV+ARF+L
Sbjct  92   TRLILLNQDAGHIVEAFGQFVVGGNLAVGLVIFLILTVVNFLVITKGSERVAEVGARFTL  151

Query  154  DAMPGKQMSIDADLRAGTIDMDEARRRRRTVEKESQLYGAMDGAMKFVKGDAIAGLIIva  213
            DAMPGKQMSID+DLRA  I + EAR RR  ++KESQL+GAMDGAMKFV+GDAIA+LIIVA
Sbjct  152  DAMPGKQMSIDSDLRANLISVYEARNRRSELNKESQLFGAMDGAMKFVNGDAIASLIIVA  211

Query  214  vnllggmlvgvlqrglSAGEAVQTYAILTIGDGLIAQIPALFIAICAGIIVTRVQTGDGP  273
            +N++GG+ +GV+Q+G++AG+A+Q Y++LTIGDGLIAQIPAL+I++  G+I+TRV   ++ 
Sbjct  212  INMIGGISIGVVQHGMTAGDALQLYTVLTIGDGLIAQIPALLISVTCGMIITRVPNTEAG  271

Query  274  --SNVGTDIGAQVLAQPRALVIAGAISAGLGLIPGMPTLVFFALAAAVGTIGFVLLRASQ  331
              +N+G +I+ Q+ +QP+A +IA+    G++ +PGMPT VF+++A   G+ G  +L+  +
Sbjct  272  VEANIGREIAEQITSQPKAWIIAAVAMLGFAALPGMPTGVFITIAIICGAGG--MLQLQR  329

Query  332  RPPEGAEPALAGMAADGQPRTRAPADGQAEFAPTVPLIIDVAARLQPRFEPATLTDDLLQ  391
              P + E +  ++A++ + +     ++   F+P+  ++++  +  ++ +   +L  ++ Q
Sbjct  330  AKPKAEEQGAVAVAPEMNGK-----EDLRTFSPSRQFVLQFHPGQNSAL-VDALVSEIRQ  383

Query  392  IRRALYFDLGVPFPGIQLRFTEALAANTYTIVLSEIPVAQGMLRDDAVLVRDTEQNLQAL  451
             R  L  ++G+ +P++ + + + L ++ + + + ++P+ ++ + +  V V   + N + +
Sbjct  384  RRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFTVYDVPMLKATFTQTHVAVDVRQFNGEDV  443

Query  452  RIAYETGAAFLPDTPTIWVAASLTGALRDAGIPYLGISQILTWHLAYVLKKYSADFIGIQ  511
              A  +G++   +   +W++A   G L   +   L I++    ++   L+  +++FIG+Q
Sbjct  444  PAAI-SGTTDRQEDQWVWLPAEQGGELATVSSMTL-ITE----RMERALQSCGPQFIGLQ  497

Query  512  ETRFLLSAMEERFPDLVKECLRVMPVQKIAEILQRLVSEEVSIRNLRAVLEALVEWGQKE  571
            ET+ +L+ +E   P+L +E  RV+ + +++ +LQRL SE V++R +R + E+L+E  Q E
Sbjct  498  ETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQRLASECVPLRAIRVIAETLIEHCQHE  557

Query  572  KDTVLLTEYVRIALKRYISHKYTSGHNILPAYLLAPKVEETVRAAIRQTAAGSYLALDPD  631
            +DT +LT+YVRIALK  I H+Y  G + L   LL+P  E  +R ++RQT + +++AL  D
Sbjct  558  RDTNVLTDYVRIALKSQIYHQY-CGADGLQVWLLTPESEGLLRDGLRQTQTETFFALSND  616

Query  632  TTRRLVEHIRQCVGDLAAGASRPVLLTSMDIRRYTRKMIEADLYALPVLSYQELTPEINV  691
             ++ LV++++  ++    ++ ++VLL + D+R   R ++  ++Y +PVLS+ E++   +V
Sbjct  617  ISQMLVQQLH--IAFPLRAPEQAVLLVAQDLRSPLRTLLREEFYHVPVLSFAEISNAAKV  674

Query  692  QPLGRVDL  699
            + +GR DL
Sbjct  675  RVMGRFDL  682

36) bcrD in NC_018518


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  345 bits (1294),  Expect = 8e-96, Method: Compositional matrix adjust.
 Identities = 284/668 (43%), Positives = 473/668 (71%), Gaps = 19/668 (2%)

Query  34   FMMILPLPTTLVDVLIGANMTLSAVLLMVAMYlpsplafssfpsvllvTTLFRLGISIAT  93
            FMMI PLPT LVDVLI+ N+ +S +L+M+AM LP PLAFS+FP+VLL+TT+FRL++SI+T
Sbjct  32   FMMITPLPTGLVDVLIAVNICISCLLIMLAMHLPRPLAFSTFPAVLLLTTMFRLALSIST  91

Query  94   TRLILLQGDAGHIIETfgnfvvggnlivglvvflilTIVQFVVITKGAERVAEVAARFSL  153
            TRLILL+ DAGHI+E+FG+FVVGGNL VGLV+FLILT+V+F+VITKG+ERVAEV+ARF+L
Sbjct  92   TRLILLNQDAGHIVEAFGQFVVGGNLAVGLVIFLILTVVNFLVITKGSERVAEVGARFTL  151

Query  154  DAMPGKQMSIDADLRAGTIDMDEARRRRRTVEKESQLYGAMDGAMKFVKGDAIAGLIIva  213
            DAMPGKQMSID+DLRA  I + EAR RR  ++KESQL+GAMDGAMKFV+GDAIA+LIIVA
Sbjct  152  DAMPGKQMSIDSDLRANLISVYEARNRRSELNKESQLFGAMDGAMKFVNGDAIASLIIVA  211

Query  214  vnllggmlvgvlqrglSAGEAVQTYAILTIGDGLIAQIPALFIAICAGIIVTRVQTGDGP  273
            +N++GG+ +GV+Q+G++AG+A+Q Y++LTIGDGLIAQIPAL+I++  G+I+TRV   ++ 
Sbjct  212  INMIGGISIGVVQHGMTAGDALQLYTVLTIGDGLIAQIPALLISVTCGMIITRVPNTEAG  271

Query  274  --SNVGTDIGAQVLAQPRALVIAGAISAGLGLIPGMPTLVFFALAAAVGTIGFVLLRASQ  331
              +N+G +I+ Q+ +QP+A +IA+    G++ +PGMPT VF+++A   G+ G  +L+  +
Sbjct  272  VEANIGREIAEQITSQPKAWIIAAVAMLGFAALPGMPTGVFITIAIICGAGG--MLQLQR  329

Query  332  RPPEGAEPALAGMAADGQPRTRAPADGQAEFAPTVPLIIDVAARLQPRFEPATLTDDLLQ  391
              P + E +  ++A++ + +     ++   F+P+  ++++  +  ++ +   +L  ++ Q
Sbjct  330  AKPKAEEQGAVAVAPEMNGK-----EDLRTFSPSRQFVLQFHPGQNSAL-VDALVSEIRQ  383

Query  392  IRRALYFDLGVPFPGIQLRFTEALAANTYTIVLSEIPVAQGMLRDDAVLVRDTEQNLQAL  451
             R  L  ++G+ +P++ + + + L ++ + + + ++P+ ++ + +  V V   + N + +
Sbjct  384  RRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFTVYDVPMLKATFTQTHVAVDVRQFNGEDV  443

Query  452  RIAYETGAAFLPDTPTIWVAASLTGALRDAGIPYLGISQILTWHLAYVLKKYSTDFIGIQ  511
              A  +G++   +   +W++A   G L   +   L I++    ++   L+  + +FIG+Q
Sbjct  444  PAAI-SGTTDRQEDQWVWLPAEQGGELATVSSMTL-ITE----RMERALQSCGPQFIGLQ  497

Query  512  ETRFLLSAMEERFPDLVKECLRVMPVQKIAEILQRLVSEEVSIRNLRAVLEALVEWGQKE  571
            ET+ +L+ +E   P+L +E  RV+ + +++ +LQRL SE V++R +R + E+L+E  Q E
Sbjct  498  ETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQRLASECVPLRAIRVIAETLIEHCQHE  557

Query  572  KDTVLLTEYVRIALKRYISHKYTSGHNILPAYLLAPKVEETVRAAIRQTAAGSYLALDPD  631
            +DT +LT+YVRIALK  I H+Y  G + L   LL+P  E  +R ++RQT + +++AL  D
Sbjct  558  RDTNVLTDYVRIALKSQIYHQY-CGADGLQVWLLTPESEGLLRDGLRQTQTETFFALSND  616

Query  632  TTRRLVEHIRQCVGDLAAGASRPVLLTSMDIRRYTRKMIEADLYALPVLSYQELTPEINV  691
             ++ LV++++  ++    ++ ++VLL + D+R   R ++  ++Y +PVLS+ E++   +V
Sbjct  617  ISQMLVQQLH--IAFPLRAPEQAVLLVAQDLRSPLRTLLREEFYHVPVLSFAEISNAAKV  674

Query  692  QPLGRVDL  699
            + +GR DL
Sbjct  675  RVMGRFDL  682

37) bcrD in NC_002927


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  344 bits (1290),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 284/668 (43%), Positives = 471/668 (71%), Gaps = 19/668 (2%)

Query  34   FMMILPLPTTLVDVLIGANMTLSAVLLMVAMYlpsplafssfpsvllvTTLFRLGISIAT  93
            FMMI PLPT LVDVLI+ N+ +S +L+M+AM LP PLAFS+FP+VLL+TT+FRL++SI+T
Sbjct  32   FMMITPLPTGLVDVLIAVNICISCLLIMLAMHLPRPLAFSTFPAVLLLTTMFRLALSIST  91

Query  94   TRLILLQGDAGHIIETfgnfvvggnlivglvvflilTIVQFVVITKGAERVAEVAARFSL  153
            TRLILL+ DAGHI+E+FG+FVVGGNL VGLV+FLILT+V+F+VITKG+ERVAEV+ARF+L
Sbjct  92   TRLILLNQDAGHIVEAFGQFVVGGNLAVGLVIFLILTVVNFLVITKGSERVAEVGARFTL  151

Query  154  DAMPGKQMSIDADLRAGTIDMDEARRRRRTVEKESQLYGAMDGAMKFVKGDAIAGLIIva  213
            DAMPGKQMSID+DLRA  I + EAR RR  ++KESQL+GAMDGAMKFV+GDAIA+LIIVA
Sbjct  152  DAMPGKQMSIDSDLRANLISVYEARNRRSELNKESQLFGAMDGAMKFVNGDAIASLIIVA  211

Query  214  vnllggmlvgvlqrglSAGEAVQTYAILTIGDGLIAQIPALFIAICAGIIVTRVQTGDG-  272
            +N++GG+ +GV+Q+G++AG+A+Q Y++LTIGDGLIAQIPAL+I++  G+I+TRV   ++ 
Sbjct  212  INMIGGISIGVVQHGMTAGDALQLYTVLTIGDGLIAQIPALLISVTCGMIITRVPNTEAG  271

Query  273  -PSNVGTDIGAQVLAQPRALVIAGAISAGLGLIPGMPTLVFFALAAVVGTIGFVLLRASQ  331
              +N+G +I+ Q+ +QP+A +IA+    G++ +PGMPT VF+++A + G+ G + L+ ++
Sbjct  272  VEANIGREIAEQITSQPKAWIIAAVAMLGFAALPGMPTGVFITIAIICGAGGMLQLQRAK  331

Query  332  RPPEGAGPALAGMAADGLPRTRAPADGQAEFAPTVPLIIDVAARLQPRFEPATLTDDLLQ  391
              +E  G+   +   +G    R+       F+P+  ++++  +  ++ +   +L  ++ Q
Sbjct  332  PKAEEQGAVAVAPEMNGKEDLRT-------FSPSRQFVLQFHPGQNSAL-VDALVSEIRQ  383

Query  392  IRRALYFDLGVPFPGIQLRFTEALAANTYTIVLSEIPVAQGMLRDDAVLVRDTEQNLQAL  451
             R  L  ++G+ +P++ + + + L ++ + + + ++P+ ++ + +  V V   + N + +
Sbjct  384  RRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFTVYDVPMLKATFTQTHVAVDVRQFNGEDV  443

Query  452  RIAYETGAAFLPDTPTIWVAASLTGALRDAGIPYLGISQILTWHLAYVLKKYSADFIGIQ  511
              A  +G++   +   +W++A   G L   +   L I++    ++   L+  +++FIG+Q
Sbjct  444  PAAI-SGTTDRQEDQWVWLPAEQGGELATVSSMTL-ITE----RMERALQSCGPQFIGLQ  497

Query  512  ETRFLLSAMEERFPDLVKECLRVMPVQKIAEILQRLVSEEVSIRNLRAVLEALVEWGQKE  571
            ET+ +L+ +E   P+L +E  RV+ + +++ +LQRL SE V++R +R + E+L+E  Q E
Sbjct  498  ETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQRLASECVPLRAIRVIAETLIEHCQHE  557

Query  572  KDTVLLTEYVRIALKRYISYKYTSGHNILPAYLLAPKVEETVRAAIRQTAAGSYLALDPD  631
            +DT +LT+YVRIALK  I  +Y  G + L   LL+P  E  +R ++RQT + +++AL  D
Sbjct  558  RDTNVLTDYVRIALKSQIYHQY-CGADGLQVWLLTPESEGLLRDGLRQTQTETFFALSND  616

Query  632  TTRRLVEHIRQCVGDLAAGASRPVLLTSMDIRRYTRKMIEADLYALPVLSYQELTPEINV  691
             ++ LV++++  ++    ++ ++VLL + D+R   R ++  ++Y +PVLS+ E++   +V
Sbjct  617  ISQMLVQQLH--IAFPLRAPEQAVLLVAQDLRSPLRTLLREEFYHVPVLSFAEISNAAKV  674

Query  692  QPLGRVDL  699
            + +GR DL
Sbjct  675  RVMGRFDL  682

38) NT01EI_0958 in NC_012779


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  343 bits (1286),  Expect = 3e-95, Method: Compositional matrix adjust.
 Identities = 260/647 (41%), Positives = 445/647 (69%), Gaps = 23/647 (3%)

Query  46   NLTLSITLLMMAVYIREPMEFSAFPSVLLITTLYRLALTISTSRLILLQHDAGEIVYTFG  105
            N+ +S  L+M+A+ +  P+ FS+FP+VLL+TT++RLAL+IST+RLILL++DAG+IV +FG
Sbjct  50   NICISCLLIMLAMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFG  109

Query  106  NFAVGGNLAVGLIVFAIITVVQFIVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGI  165
            +F VGGNLAVGL++F I+TVV+F+VITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +
Sbjct  110  QFVVGGNLAVGLVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANL  169

Query  166  IDATEARRQRALVQKESQLYGAMDGAMKFVKGDAIASiivilvnivggicvgvFMHEMSA  225
            I   EAR +R+ ++KESQL+GAMDGAMKFV+GDAIAS+I++ +N++GGI +GV  H M+A
Sbjct  170  ISVYEARNRRSELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVVQHGMTA  229

Query  226  GDAAATYAILSVGDGLIAQIPALLISIAAGIIVTRVPGEN---RRNLASELTEQILRQRQ  282
            GDA   Y++L++GDGLIAQIPALLIS++ G+I+TRVP  +     N++ E++EQI  Q +
Sbjct  230  GDALQLYTVLTIGDGLIAQIPALLISVTCGMIITRVPNTEAGVEANIGREIAEQITSQPK  289

Query  283  alwivaavlalfaalPGFPTLIFLSLGAGLAAIAYSLRRKEQQhsphtashsaasRDESG  342
            A  I A  +  FAALPG PT +F++++  + + +  L+ +  +  ++  +  A + + +G
Sbjct  290  AWIIAAVAMLGFAALPGMPTGVFITIAI-ICGAGGMLQLQRAKPKAEEQGAVAVAPEMNG  348

Query  343  QEGAPLLIGATplalrlpdalardpSLTQALAT---LRAEKL-EQAGLPLPEIQIQTDNG  398
            +E+   +  + +  + L    +++++L +AL +    R ++L  Q GL LP + I+  + 
Sbjct  349  KEDLRTF--SPSRQFVLQFHPGQNSALVDALVSEIRQRRNRLVVQFGLTLPSFIIEYVDH  406

Query  399  FGPDQFALLLYQEPVLAITLPHLALLDITAPPLRQADHRETLPFGGITLQ-----WLSLE  453
            + PD+F + +Y+ P+L  T+ + + + +    +   D   +++ G    Q     WL+ E
Sbjct  407  LQPDEFRFTVYDVPMLKATFTQ-THVAVDVRQFNGEDVPAAIS-GTTDRQEDQWVWLPAE  464

Query  454  QAESSATIGVNSYQGNARIAYLVSLALDRYGAEFIGVQEARYLMDQMEQRYGELVKELQR  513
            Q+   AT++  +   +      +  AL+  G++FIG+QE++ +++ +E    EL +E+QR
Sbjct  465  QGGELATVSSMTLITER-----MERALQSCGPQFIGLQETKAILGWLESEQPELAQEMQR  519

Query  514  QLPVARIADVLQRLVAESVSIRDLRSIFEALVEWAPREKDPVMLAEYARLALRRHIVGRQ  573
             L ++R++ VLQRL +E V++R +R I E+L+E   +E+D  +L++Y R+AL+ +I  +Q
Sbjct  520  VLTLTRFSAVLQRLASECVPLRAIRVIAETLIEHCQHERDTNVLTDYVRIALKSQIY-HQ  578

Query  574  RHGQPWVKAWLIGSHIEQMMRESIRQTSAGSYSALSPQENQAILAEIHAALERSGGANTA  633
              G   ++ WL+ ++ E ++R+++RQT + ++ ALS + +Q ++ ++H A+   +  ++ 
Sbjct  579  YCGADGLQVWLLTPESEGLLRDGLRQTQTETFFALSNDISQMLVQQLHIAFPLRAPEQAV  638

Query  634  IVTAIDIRRFIRKLIERELFTTPVLSFQELDDEAELKVLGHIELIGD  680
            ++ A D+R  +R L+  E++  PVLSF E+ + A ++V+G+++L +D
Sbjct  639  LLVAQDLRSPLRTLLREEFYHVPVLSFAEISNAAKVRVMGRFDLEDD  685

39) lcrD in NC_015717


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  342 bits (1285),  Expect = 4e-95, Method: Compositional matrix adjust.
 Identities = 268/666 (41%), Positives = 462/666 (70%), Gaps = 35/666 (5%)

Query  40   DMLQALNLTISAILLMVAVYIKSPLAFVSFPsllllttlfrlslGIASTRLILLEANAGD  99
            D+L A+N+ IS +L+M+A+ +  PLAF +FP++LLLTT+FRL+L+I++TRLILL+ +AG+
Sbjct  44   DVLIAVNICISCLLIMLAMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGH  103

Query  100  IITTFGNFVVAGNLVVGAVIFLIITIVQFIVITKGSERVAEVAARFSLDAMPGKQMSIDG  159
            I+ +FG+FVV+GNL VG VIFLI+T+V+F+VITKGSERVAEV+ARF+LDAMPGKQMSID+
Sbjct  104  IVEAFGQFVVGGNLAVGLVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDS  163

Query  160  DMRAGTIDMNEARRRRGMVEKESQLYGAMDGAMKFVKGDaiagligiavnllggiaigag  219
            D+RA  I + EAR RR+ ++KESQL+GAMDGAMKFV+GDAIA+LI +A+N++GGI+IG  
Sbjct  164  DLRANLISVYEARNRRSELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVV  223

Query  220  qlgMSVSDAVNTYSILTIGDGLVGQIPGLFTSITAGFIVTRVSSEEAG--TNLGDEIGGE  277
            Q GM+ +DA++ Y++LTIGDGL++QIP+L+ S+T G I+TRV++ EAG  +N+G EI+ +
Sbjct  224  QHGMTAGDALQLYTVLTIGDGLIAQIPALLISVTCGMIITRVPNTEAGVEANIGREIAEQ  283

Query  278  VTAQPKALMVASSILVIFAVIPGFPTTIFLALAVLSGGGGYMLHRQATMPKQDGDPFSAN  337
            +T+QPKA ++A+  ++ FA +PG PT +F+++A++ G+GG ML+ Q + PK + +   + 
Sbjct  284  ITSQPKAWIIAAVAMLGFAALPGMPTGVFITIAIICGAGG-MLQLQRAKPKAEEQ---GA  339

Query  338  LPAASASGGTPTVRRAGNDADDFSLTVPVMVDVGTDVQTLIRPDALNDTLAQVRRALYYD  397
            ++ A+   G   + R+ + + +F L          +  +L+  DAL   + Q R  L  +
Sbjct  340  VAVAPEMNGKEDL-RTFSPSRQFVLQFH-----PGQNSALV--DALVSEIRQRRNRLVVQ  391

Query  398  LGVPFPGINLRLNDRYNGGRYVILLNEVPCGEGHMRSGFLLARDSVENLSLLG------I  451
            +G+ +P++ +   D+ + + + + + +VP     +++ F  ++ +V+   + G      I
Sbjct  392  FGLTLPSFIIEYVDHLQPDEFRFTVYDVP----MLKATFTQTHVAVDVRQFNGEDVPAAI  447

Query  452  PNETDKPFLPLIETIWVAQEHRPALEAGSVSFMEPAQLLSYHIGHVLRRYAEEFIGIQET  511
            +  TD+      E  WV     PA ++G ++ + +  L++ ++ + L+  + +FIG+QET
Sbjct  448  SGTTDRQ-----EDQWV---WLPAEQGGELATVSSMTLITERMERALQSCGPQFIGLQET  499

Query  512  RFLLSRMEERFPELVKEVQRIVPLQRIAEILQRLVSEGVSVRNMRAILTALIDWGQKEKD  571
            + +L+++E   PEL +E+QR++ L R++ +LQRL SE V++R +R I  +LI+  Q E+D
Sbjct  500  KAILGWLESEQPELAQEMQRVLTLTRFSAVLQRLASECVPLRAIRVIAETLIEHCQHERD  559

Query  572  VVLLTEHIRGALKRQICYRHSSGLNILPAYVVTPELEDTVRNAVRQTSSGSYLALDPRTT  631
              +LT+ +R ALK QI Y++  G + L   ++TPE E+ +R+++RQT + +++AL    +
Sbjct  560  TNVLTDYVRIALKSQI-YHQYCGADGLQVWLLTPESEGLLRDGLRQTQTETFFALSNDIS  618

Query  632  RQIIEKvqgalggvgqqaRKPVLLTAMDIRRYVKKIVEGDCPDLPVLSYQELTPEITVQP  691
            + ++++++ A+   + +  ++VLL A D+R  ++ ++  +  ++PVLS+ E++    V+ 
Sbjct  619  QMLVQQLHIAFPLRAPE--QAVLLVAQDLRSPLRTLLREEFYHVPVLSFAEISNAAKVRV  676

Query  692  LARVSL  697
            ++R  L
Sbjct  677  MGRFDL  682

40) HCH_03273 in NC_007645


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  334 bits (1252),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 284/684 (42%), Positives = 474/684 (70%), Gaps = 24/684 (3%)

Query  16   RKDILFAAMLVAIIFMMILPLPTVLVDILIgvnmglavvllmvgvYLRSPLEFVAFPSVl  75
            R +++ A  ++AI+FMMI PLPT LVD+LI+VN+ ++ +L+M+++ L  PL F +FP+VL
Sbjct  18   RSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIMLAMHLPRPLAFSTFPAVL  77

Query  76   littlfrlslsitttrlillQADAGSIIEAfggfvvggnlvvglvifliitvvQFLVITK  135
            L+TT+FRL+LSI+TTRLILL+ DAG I+EAFG FVVGGNL VGLVIFLI+TVV+FLVITK
Sbjct  78   LLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVGLVIFLILTVVNFLVITK  137

Query  136  GSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVDEARHRRSQVQKESQLYGSMDGAMK  195
            GSERVAEV+ARF+LDAMPGKQMSID+D+RA +I V EAR+RRS+++KESQL+G+MDGAMK
Sbjct  138  GSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRSELNKESQLFGAMDGAMK  197

Query  196  FVKGDAIAGLIIIAVNILGGIAIGTLQNGMTSGEALELYALLTIGDGLVAQIPALFIAIT  255
            FV+GDAIA+LII+A+N++GGI+IG +Q+GMT+G+AL+LY++LTIGDGL+AQIPAL+I++T
Sbjct  198  FVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLTIGDGLIAQIPALLISVT  257

Query  256  AGVIVTRVTTDES---ENLGADIANQIVSKPQAILIGGGLLFTFALIPGFPTLTFIVLAL  312
             G+I+TRV   E+    N+G +IA+QI S+P+A +I++  ++ FA +PG PT  FI +A+
Sbjct  258  CGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIAAVAMLGFAALPGMPTGVFITIAI  317

Query  313  TLTGIGVFTLRQSKNASADKHPPLSAMAAAGQPPSKAQLNEAEEFTFTVPLLVDIAADAE  372
               + G++ L+++K  + ++    +A+A A +  +K +L     F+ +  +++++ ++ +
Sbjct  318  ICGAGGMLQLQRAKPKAEEQ----GAVAVAPEMNGKEDLR---TFSPSRQFVLQFHPGQN  370

Query  373  DALDPNALNEEILKIRRSLYLDLGVPFPGIHLRINHGLSDGRYKIHLQETPI-AEGFIKP  431
             AL  +AL  EI + R  L +++G+ +P++ +   + L  + +++ + + P+    F + 
Sbjct  371  SAL-VDALVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFTVYDVPMLKATFTQT  429

Query  432  RQLL-VRDQKEQLDLLAIEHNSEVELLPDAPAYWVEQRHQTSLDKMEVAYLTPPRVLSYH  490
            +  + VR+ + +    AI   ++ +   +    W+   +   L  +    L   R     
Sbjct  430  HVAVDVRQFNGEDVPAAISGTTDRQ---EDQWVWLPAEQGGELATVSSMTLITER-----  481

Query  491  LSIILKKYAQEFIGIQETRFLLEKMEGRYGELVKEVQRLLPIQKITEILQRLVSEDISIR  550
            +   L+  + +FIG+QET+ +L  +E+   EL +E+QR+L + +++ +LQRL SE +++R
Sbjct  482  MERALQSCGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQRLASECVPLR  541

Query  551  NLRSILEALAEWAQKEKETVLLTEYVRNSLRRYISYKYSNGQNILPAYMLDQSLEDAIRG  610
             +R I E+L E  Q E++T +LT+YVR +L+  I  +Y  ++  L   +L    E+ +R+
Sbjct  542  AIRVIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADG-LQVWLLTPESEGLLRD  600

Query  611  GVRQTSSGAYLALEPDTTRKIVEITRRTVGDLNPGAQKVVVITSMDVRRYLRKLLERDMR  670
            G+RQT + +++AL  D ++ +V+  + +   L +  Q V++++  D+R  LR LL  +  
Sbjct  601  GLRQTQTETFFALSNDISQMLVQQLHIAFP-LRAPEQAVLLVAQ-DLRSPLRTLLREEFY  658

Query  671  QLPILSYQDLTPEITIQPLGRIAL  694
            ++P+LS+ +++    ++ +GR+ L
Sbjct  659  HVPVLSFAEISNAAKVRVMGRFDL  682

41) bcrD in NC_002928


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  333 bits (1248),  Expect = 3e-92, Method: Compositional matrix adjust.
 Identities = 278/651 (43%), Positives = 460/651 (71%), Gaps = 19/651 (2%)

Query  34   FMMILPLPTTLVDVLIGANMTLSAVLLMVAMYlpsplafssfpsvllvTTLFRLGISIAT  93
            FMMI PLPT LVDVLI+ N+ +S +L+M+AM LP PLAFS+FP+VLL+TT+FRL++SI+T
Sbjct  32   FMMITPLPTGLVDVLIAVNICISCLLIMLAMHLPRPLAFSTFPAVLLLTTMFRLALSIST  91

Query  94   TRLILLQGDAGHIIETfgnfvvggnlivglvvflilTIVQFVVITKGAERVAEVAARFSL  153
            TRLILL+ DAGHI+E+FG+FVVGGNL VGLV+FLILT+V+F+VITKG+ERVAEV+ARF+L
Sbjct  92   TRLILLNQDAGHIVEAFGQFVVGGNLAVGLVIFLILTVVNFLVITKGSERVAEVGARFTL  151

Query  154  DAMPGKQMSIDADLRAGTIDMDEARRRRRTVEKESQLYGAMDGAMKFVKGDAIAGLIIva  213
            DAMPGKQMSID+DLRA  I + EAR RR  ++KESQL+GAMDGAMKFV+GDAIA+LIIVA
Sbjct  152  DAMPGKQMSIDSDLRANLISVYEARNRRSELNKESQLFGAMDGAMKFVNGDAIASLIIVA  211

Query  214  vnllggmlvgvlqrglSAGEAVQTYAILTIGDGLIAQIPALFIAICAGIIVTRVQTGDG-  272
            +N++GG+ +GV+Q+G++AG+A+Q Y++LTIGDGLIAQIPAL+I++  G+I+TRV   ++ 
Sbjct  212  INMIGGISIGVVQHGMTAGDALQLYTVLTIGDGLIAQIPALLISVTCGMIITRVPNTEAG  271

Query  273  -PSNVGTDIGAQVLAQPRALVIAGAISAGLGLIPGMPTLVFFALAAVVGTIGFVLLRASQ  331
              +N+G +I+ Q+ +QP+A +IA+    G++ +PGMPT VF+++A + G+ G + L+ ++
Sbjct  272  VEANIGREIAEQITSQPKAWIIAAVAMLGFAALPGMPTGVFITIAIICGAGGMLQLQRAK  331

Query  332  RPPEGAGPALAGMAADGQPRTRAPADGQAEFAPTVPLIIDVAARLQPRFEPATLTDDLLQ  391
              +E  G+   +   +G+   R+       F+P+  ++++  +  ++ +   +L  ++ Q
Sbjct  332  PKAEEQGAVAVAPEMNGKEDLRT-------FSPSRQFVLQFHPGQNSAL-VDALVSEIRQ  383

Query  392  IRRALYFDLGVPFPGIQLRFTEALAANTYTIVLSEIPVAQGMLRDDAVLVRDTEQNLQAL  451
             R  L  ++G+ +P++ + + + L ++ + + + ++P+ ++ + +  V V   + N + +
Sbjct  384  RRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFTVYDVPMLKATFTQTHVAVDVRQFNGEDV  443

Query  452  RIAYETGAAFLPDTPTIWVAASLTGALRDAGIPYLGISQILTWHLAYVLKKYSADFIGIQ  511
              A  +G++   +   +W++A   G L   +   L I++    ++   L+  +++FIG+Q
Sbjct  444  PAAI-SGTTDRQEDQWVWLPAEQGGELATVSSMTL-ITE----RMERALQSCGPQFIGLQ  497

Query  512  ETRFLLSAMEERFPDLVKECLRVMPVQKIAEILQRLVSEEVSIRNLRAVLEALVEWGQKE  571
            ET+ +L+ +E   P+L +E  RV+ + +++ +LQRL SE V++R +R + E+L+E  Q E
Sbjct  498  ETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQRLASECVPLRAIRVIAETLIEHCQHE  557

Query  572  KDTVLLTEYVRIALKRYISYKYTSGHNILPAYLLAPKVEETVRAAIRQTAAGSYLALDPD  631
            +DT +LT+YVRIALK  I  +Y  G + L   LL+P  E  +R ++RQT + +++AL  D
Sbjct  558  RDTNVLTDYVRIALKSQIYHQY-CGADGLQVWLLTPESEGLLRDGLRQTQTETFFALSND  616

Query  632  TTRRLVEYIRQCVGDLAAGASRPVLLTSMDIRRYTRKMIEADLYALPVLSY  682
             ++ LV+ ++  ++    ++ ++VLL + D+R   R ++  ++Y +PVLS+
Sbjct  617  ISQMLVQQLH--IAFPLRAPEQAVLLVAQDLRSPLRTLLREEFYHVPVLSF  665

42) VPBB_1522 in NC_019955


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  331 bits (1242),  Expect = 1e-91, Method: Compositional matrix adjust.
 Identities = 286/713 (41%), Positives = 497/713 (70%), Gaps = 45/713 (6%)

Query  1    MNKLIDILNKVG----QRKDIMLAVMLLAIVFMMILPLPTALVDVLIGANMSIAVVLLML  56
            MN++I++LN V+    +R +++ A  ++AIVFMMI PLPT+LVDVLI+ N+ I+ +L+ML
Sbjct  1    MNQIINFLNMVALSAMRRSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIML  60

Query  57   AIYITTPLEFSAFPAVllittlfrlslsitttrlillQGDAGQIVYtfgnfvvggnlvvg  116
            A+ +  PL FS+FPAVLL+TT+FRL+LSI+TTRLILL+ DAG+IV +FG+FVVGGNL VG
Sbjct  61   AMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVG  120

Query  117  ivvfliitivQFMVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVHEARHRRS  176
            +V+FLI+T+V+F+VITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +I V EAR+RRS
Sbjct  121  LVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRS  180

Query  177  LIEKESQMYGSMDGAMKFVKGDSIAglviiivnilggvtigvtQKGMSASEALELFAILT  236
             ++KESQ++G+MDGAMKFV+GD+IA+L+I+ +N++GG++IGV Q GM+A++AL+L+++LT
Sbjct  181  ELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLT  240

Query  237  VGDGLVSQIPALFIAITAGIIVTRVSHEDS---ADLGSDIGGQVTAQPRALLIGGVLLVL  293
            +GDGL++QIPAL+I++T G+I+TRV++ ++   A++G +I+ Q+T+QP+A +I++V ++ 
Sbjct  241  IGDGLIAQIPALLISVTCGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIAAVAMLG  300

Query  294  FALIPGFPKITflvlalvvggggfylfyQQKKQTESESSDLPSFVAQGAGSPAAKPNKPT  353
            FA +PG P   F+ +A++ G+GG   + + K ++E +            G+ A  P+   
Sbjct  301  FAALPGMPTGVFITIAIICGAGGMLQLQRAKPKAEEQ------------GAVAVAPEM--  346

Query  354  PSRGSKGKLGEQEEFAMTVPLLIDLDSSLQESLEAVALNDELARVRRALYLDLGVPFPGI  413
                 +GK  +   F+ +  ++++++++ + +L   AL  E+ + R  L +++G+ +P++
Sbjct  347  -----NGK-EDLRTFSPSRQFVLQFHPGQNSALVD-ALVSEIRQRRNRLVVQFGLTLPSF  399

Query  414  HLRFNDGMKNGEYLIQLQEVPVARGRIEKDKLLVT----EGSDQIELLGVPFEQDDDFLP  469
             + + D ++ +E+ + + +VP+ ++ + +  + V     +G D    ++   ++++D   
Sbjct  400  IIEYVDHLQPDEFRFTVYDVPMLKATFTQTHVAVDVRQFNGEDVPAAISGTTDRQED---  456

Query  470  GVSSLWVAQSYQEKLTASHVGFLTPDRILTFHLSHVLKEYAQDFIGIQETRYLLEQMEGS  529
                +W++      L++     L  +R     + + L+  + +FIG+QET+ +L  +E+ 
Sbjct  457  --QWVWLPAEQGGELATVSSMTLITER-----MERALQSCGPQFIGLQETKAILGWLESE  509

Query  530  YSELVKEAQRIVPLQKMTEILQRLVSEDISIRNLRVILEAMVEWGQKEKDVVQLTEYIRS  589
             +EL +E QR++ L + + +LQRL SE +++R +RVI E+++E  Q E+D   LT+Y+R 
Sbjct  510  QPELAQEMQRVLTLTRFSAVLQRLASECVPLRAIRVIAETLIEHCQHERDTNVLTDYVRI  569

Query  590  SLKRYICYKYASGQNMLPAYLLDQSLEDTIRSGIRQTSAGSYLALDPSVTQQFVSDVKQT  649
            +LK  I  +Y  G + L   LL    E+ +R G+RQT + +++AL   ++Q +V ++  +
Sbjct  570  ALKSQIYHQY-CGADGLQVWLLTPESEGLLRDGLRQTQTETFFALSNDISQMLVQQLHIA  628

Query  650  VGDLSRMPNKPVLVVSMDVRRYVRKLIESEYYDLPVLSFQELTQQINIQPLGR  702
                 R P+++VL+V+ D+R  +R L+  E+Y++PVLSF E+++  +++ +GR
Sbjct  629  FP--LRAPEQAVLLVAQDLRSPLRTLLREEFYHVPVLSFAEISNAAKVRVMGR  679

43) M636_13755 in NC_021848


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  331 bits (1242),  Expect = 1e-91, Method: Compositional matrix adjust.
 Identities = 286/713 (41%), Positives = 497/713 (70%), Gaps = 45/713 (6%)

Query  1    MNKLIDILNKVG----QRKDIMLAVMLLAIVFMMILPLPTALVDVLIGANMSIAVVLLML  56
            MN++I++LN V+    +R +++ A  ++AIVFMMI PLPT+LVDVLI+ N+ I+ +L+ML
Sbjct  1    MNQIINFLNMVALSAMRRSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIML  60

Query  57   AIYITTPLEFSAFPAVllittlfrlslsitttrlillQGDAGQIVYtfgnfvvggnlvvg  116
            A+ +  PL FS+FPAVLL+TT+FRL+LSI+TTRLILL+ DAG+IV +FG+FVVGGNL VG
Sbjct  61   AMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVG  120

Query  117  ivvfliitivQFMVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVHEARHRRS  176
            +V+FLI+T+V+F+VITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +I V EAR+RRS
Sbjct  121  LVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRS  180

Query  177  LIEKESQMYGSMDGAMKFVKGDSIAglviiivnilggvtigvtQKGMSASEALELFAILT  236
             ++KESQ++G+MDGAMKFV+GD+IA+L+I+ +N++GG++IGV Q GM+A++AL+L+++LT
Sbjct  181  ELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLT  240

Query  237  VGDGLVSQIPALFIAITAGIIVTRVSHEDS---ADLGSDIGGQVTAQPRALLIGGVLLIL  293
            +GDGL++QIPAL+I++T G+I+TRV++ ++   A++G +I+ Q+T+QP+A +I++V ++ 
Sbjct  241  IGDGLIAQIPALLISVTCGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIAAVAMLG  300

Query  294  FALIPGFPKITflvlalvvggggfylfyQQKKQTESESSDLPSFVAQGAGSPAAKPNKPT  353
            FA +PG P   F+ +A++ G+GG   + + K ++E +            G+ A  P+   
Sbjct  301  FAALPGMPTGVFITIAIICGAGGMLQLQRAKPKAEEQ------------GAVAVAPEM--  346

Query  354  PSRGSKGKLGEQEEFAMTVPLLIDLDSSLQESLEAVALNDELARVRRALYLDLGVPFPGI  413
                 +GK  +   F+ +  ++++++++ + +L   AL  E+ + R  L +++G+ +P++
Sbjct  347  -----NGK-EDLRTFSPSRQFVLQFHPGQNSALVD-ALVSEIRQRRNRLVVQFGLTLPSF  399

Query  414  HLRFNDGMKNGEYLIQLQEVPVARGRIEKDKLLVT----EGSDQIELLGVPFEQDDDFLP  469
             + + D ++ +E+ + + +VP+ ++ + +  + V     +G D    ++   ++++D   
Sbjct  400  IIEYVDHLQPDEFRFTVYDVPMLKATFTQTHVAVDVRQFNGEDVPAAISGTTDRQED---  456

Query  470  GVSSLWVAQSYQEKLTASHVGFLTPDRILTFHLSHVLKEYAQDFIGIQETRYLLEQMEGS  529
                +W++      L++     L  +R     + + L+  + +FIG+QET+ +L  +E+ 
Sbjct  457  --QWVWLPAEQGGELATVSSMTLITER-----MERALQSCGPQFIGLQETKAILGWLESE  509

Query  530  YSELVKEAQRIVPLQKMTEILQRLVSEDISIRNLRVILEAMVEWGQKEKDVVQLTEYIRS  589
             +EL +E QR++ L + + +LQRL SE +++R +RVI E+++E  Q E+D   LT+Y+R 
Sbjct  510  QPELAQEMQRVLTLTRFSAVLQRLASECVPLRAIRVIAETLIEHCQHERDTNVLTDYVRI  569

Query  590  SLKRYICYKYASGQNMLPAYLLDQSLEDTIRSGIRQTSAGSYLALDPSVTQQFVSDVKQT  649
            +LK  I  +Y  G + L   LL    E+ +R G+RQT + +++AL   ++Q +V ++  +
Sbjct  570  ALKSQIYHQY-CGADGLQVWLLTPESEGLLRDGLRQTQTETFFALSNDISQMLVQQLHIA  628

Query  650  VGDLSRMPNKPVLVVSMDVRRYVRKLIESEYYDLPVLSFQELTQQINIQPLGR  702
                 R P+++VL+V+ D+R  +R L+  E+Y++PVLSF E+++  +++ +GR
Sbjct  629  FP--LRAPEQAVLLVAQDLRSPLRTLLREEFYHVPVLSFAEISNAAKVRVMGR  679

44) VP1662 in NC_004603


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  331 bits (1241),  Expect = 1e-91, Method: Compositional matrix adjust.
 Identities = 286/713 (41%), Positives = 497/713 (70%), Gaps = 45/713 (6%)

Query  4    MNKLIDILNKVG----QRKDIMLAVMLLAIVFMMILPLPTALVDVLIGANMSIAVVLLML  59
            MN++I++LN V+    +R +++ A  ++AIVFMMI PLPT+LVDVLI+ N+ I+ +L+ML
Sbjct  1    MNQIINFLNMVALSAMRRSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIML  60

Query  60   AIYITTPLEFSAFPAVllittlfrlslsitttrlillQGDAGQIVYtfgnfvvggnlvvg  119
            A+ +  PL FS+FPAVLL+TT+FRL+LSI+TTRLILL+ DAG+IV +FG+FVVGGNL VG
Sbjct  61   AMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVG  120

Query  120  ivvfliitivQFMVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVHEARHRRS  179
            +V+FLI+T+V+F+VITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +I V EAR+RRS
Sbjct  121  LVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRS  180

Query  180  LIEKESQMYGSMDGAMKFVKGDSIAglviiivnilggvtigvtQKGMSASEALELFAILT  239
             ++KESQ++G+MDGAMKFV+GD+IA+L+I+ +N++GG++IGV Q GM+A++AL+L+++LT
Sbjct  181  ELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLT  240

Query  240  VGDGLVSQIPALFIAITAGIIVTRVSHEDS---ADLGSDIGGQVTAQPRALLIGGVLLVL  296
            +GDGL++QIPAL+I++T G+I+TRV++ ++   A++G +I+ Q+T+QP+A +I++V ++ 
Sbjct  241  IGDGLIAQIPALLISVTCGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIAAVAMLG  300

Query  297  FALIPGFPKITflvlalvvggggfylfyQQKKQTESESSDLPSFVAQGAGSPAAKPNKPT  356
            FA +PG P   F+ +A++ G+GG   + + K ++E +            G+ A  P+   
Sbjct  301  FAALPGMPTGVFITIAIICGAGGMLQLQRAKPKAEEQ------------GAVAVAPEM--  346

Query  357  PSRGSKGKLGEQEEFAMTVPLLIDLDSSLQESLEAVALNDELARVRRALYLDLGVPFPGI  416
                 +GK  +   F+ +  ++++++++ + +L   AL  E+ + R  L +++G+ +P++
Sbjct  347  -----NGK-EDLRTFSPSRQFVLQFHPGQNSALVD-ALVSEIRQRRNRLVVQFGLTLPSF  399

Query  417  HLRFNDGMKNGEYLIQLQEVPVARGRIEKDKLLVT----EGSDQIELLGVPFEQDDDFLP  472
             + + D ++ +E+ + + +VP+ ++ + +  + V     +G D    ++   ++++D   
Sbjct  400  IIEYVDHLQPDEFRFTVYDVPMLKATFTQTHVAVDVRQFNGEDVPAAISGTTDRQED---  456

Query  473  GVSSLWVAQSYQEKLTASHVGFLTPDRILTFHLSHVLKEYAQDFIGIQETRYLLEQMEGS  532
                +W++      L++     L  +R     + + L+  + +FIG+QET+ +L  +E+ 
Sbjct  457  --QWVWLPAEQGGELATVSSMTLITER-----MERALQSCGPQFIGLQETKAILGWLESE  509

Query  533  YSELVKEAQRIVPLQKMTEILQRLVSEDISIRNLRVILEAMVEWGQKEKDVVQLTEYIRS  592
             +EL +E QR++ L + + +LQRL SE +++R +RVI E+++E  Q E+D   LT+Y+R 
Sbjct  510  QPELAQEMQRVLTLTRFSAVLQRLASECVPLRAIRVIAETLIEHCQHERDTNVLTDYVRI  569

Query  593  SLKRYICYKYASGQNMLPAYLLDQSLEDTIRSGIRQTSAGSYLALDPSVTQQFVSDVKQT  652
            +LK  I  +Y  G + L   LL    E+ +R G+RQT + +++AL   ++Q +V ++  +
Sbjct  570  ALKSQIYHQY-CGADGLQVWLLTPESEGLLRDGLRQTQTETFFALSNDISQMLVQQLHIA  628

Query  653  VGDLSRMPNKPVLVVSMDVRRYVRKLIESEYYDLPVLSFQELTQQINIQPLGR  705
                 R P+++VL+V+ D+R  +R L+  E+Y++PVLSF E+++  +++ +GR
Sbjct  629  FP--LRAPEQAVLLVAQDLRSPLRTLLREEFYHVPVLSFAEISNAAKVRVMGR  679

45) M634_09155 in NC_021847


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  330 bits (1240),  Expect = 1e-91, Method: Compositional matrix adjust.
 Identities = 286/713 (41%), Positives = 497/713 (70%), Gaps = 45/713 (6%)

Query  1    MNKLIDILNKVG----QRKDIMLAVMLLAIVFMMILPLPTALVDVLIGANMSIAVVLLML  56
            MN++I++LN V+    +R +++ A  ++AIVFMMI PLPT+LVDVLI+ N+ I+ +L+ML
Sbjct  1    MNQIINFLNMVALSAMRRSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIML  60

Query  57   AIYITTPLEFSAFPAVllittlfrlslsitttrlillQGDAGQIVYtfgnfvvggnlvvg  116
            A+ +  PL FS+FPAVLL+TT+FRL+LSI+TTRLILL+ DAG+IV +FG+FVVGGNL VG
Sbjct  61   AMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVG  120

Query  117  ivvfliitivQFMVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVHEARHRRS  176
            +V+FLI+T+V+F+VITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +I V EAR+RRS
Sbjct  121  LVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRS  180

Query  177  LIEKESQMYGSMDGAMKFVKGDSIAglviiivnilggvtigvtQKGMSASEALELFAILT  236
             ++KESQ++G+MDGAMKFV+GD+IA+L+I+ +N++GG++IGV Q GM+A++AL+L+++LT
Sbjct  181  ELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLT  240

Query  237  VGDGLVSQIPALFIAITAGIIVTRVSHEDS---ADLGSDIGGQVTAQPRALLIGGVLLVL  293
            +GDGL++QIPAL+I++T G+I+TRV++ ++   A++G +I+ Q+T+QP+A +I++V ++ 
Sbjct  241  IGDGLIAQIPALLISVTCGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIAAVAMLG  300

Query  294  FALIPGFPKITflvlalvvggggfylfyQQKKQTESESSDLPSFVAQGAGSPAAKPNKPT  353
            FA +PG P   F+ +A++ G+GG   + + K ++E +            G+ A  P+   
Sbjct  301  FAALPGMPTGVFITIAIICGAGGMLQLQRAKPKAEEQ------------GAVAVAPEM--  346

Query  354  PSRGSKGKLGEQEEFAMTVPLLIDLDSSLQESLEAVALNDELARVRRALYLDLGVPFPGI  413
                 +GK  +   F+ +  ++++++++ + +L   AL  E+ + R  L +++G+ +P++
Sbjct  347  -----NGK-EDLRTFSPSRQFVLQFHPGQNSALVD-ALVSEIRQRRNRLVVQFGLTLPSF  399

Query  414  HLRFNDGMKNGEYLIQLQEVPVARGRIEKDKLLVT----EGSDQIELLGVPFEQDDDFLP  469
             + + D ++ +E+ + + +VP+ ++ + +  + V     +G D    ++   ++++D   
Sbjct  400  IIEYVDHLQPDEFRFTVYDVPMLKATFTQTHVAVDVRQFNGEDVPAAISGTTDRQED---  456

Query  470  GVSSLWVAQSYQEKLTASHVGFLTPDRILTFHLSHVLKEYAQDFIGIQETRYLLEQMEGS  529
                +W++      L++     L  +R     + + L+  + +FIG+QET+ +L  +E+ 
Sbjct  457  --QWVWLPAEQGGELATVSSMTLITER-----MERALQSCGPQFIGLQETKAILGWLESE  509

Query  530  YSELVKEAQRIVPLQKMTEILQRLVSEDISIRNLRVILEAMVEWGQKEKDVVQLTEYIRS  589
             +EL +E QR++ L + + +LQRL SE +++R +RVI E+++E  Q E+D   LT+Y+R 
Sbjct  510  QPELAQEMQRVLTLTRFSAVLQRLASECVPLRAIRVIAETLIEHCQHERDTNVLTDYVRI  569

Query  590  SLKRYICYKYASGHNMLPAYLLDQSLEDTIRSGIRQTSAGSYLALDPSVTQQFVSDVKQT  649
            +LK  I  +Y  G + L   LL    E+ +R G+RQT + +++AL   ++Q +V ++  +
Sbjct  570  ALKSQIYHQY-CGADGLQVWLLTPESEGLLRDGLRQTQTETFFALSNDISQMLVQQLHIA  628

Query  650  VGDLSRMPNKPVLVVSMDVRRYVRKLIESEYYDLPVLSFQELTQQINIQPLGR  702
                 R P+++VL+V+ D+R  +R L+  E+Y++PVLSF E+++  +++ +GR
Sbjct  629  FP--LRAPEQAVLLVAQDLRSPLRTLLREEFYHVPVLSFAEISNAAKVRVMGR  679

46) esaV in NC_013508


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  328 bits (1229),  Expect = 1e-90, Method: Compositional matrix adjust.
 Identities = 261/649 (41%), Positives = 442/649 (69%), Gaps = 27/649 (4%)

Query  46   NLTLSITLLMMAVYIREPMEFSAFPSVLLITTLYRLALTISTSRLILLQHDAGEIVYTFG  105
            N+ +S  L+M+A+ +  P+ FS+FP+VLL+TT++RLAL+IST+RLILL++DAG+IV +FG
Sbjct  50   NICISCLLIMLAMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFG  109

Query  106  NFAVGGNLAVGLIVFAIITVVQFIVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGI  165
            +F VGGNLAVGL++F I+TVV+F+VITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +
Sbjct  110  QFVVGGNLAVGLVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANL  169

Query  166  IDATEARRQRALVQKESQLYGAMDGAMKFVKGDAIASiivilvnivggicvgvFMHEMSA  225
            I   EAR +R+ ++KESQL+GAMDGAMKFV+GDAIAS+I++ +N++GGI +GV  H M+A
Sbjct  170  ISVYEARNRRSELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVVQHGMTA  229

Query  226  GDAAATYAILSVGDGLIAQIPALLISIAAGIIVTRVPGEN---RRNLASELTEQILRQRQ  282
            GDA   Y++L++GDGLIAQIPALLIS++ G+I+TRVP  +     N++ E++EQI  Q +
Sbjct  230  GDALQLYTVLTIGDGLIAQIPALLISVTCGMIITRVPNTEAGVEANIGREIAEQITSQPK  289

Query  283  alwivaavlalfaalPGFPTlifiglgaglaaiaYSLRRKERQRSPLAAGHSASDHDESG  342
            A  I A  +  FAALPG PT +FI ++   +A +    ++ + ++    G  A   + +G
Sbjct  290  AWIIAAVAMLGFAALPGMPTGVFITIAIICGAGGMLQLQRAKPKAE-EQGAVAVAPEMNG  348

Query  343  QEGAPLLIGATplalrlpdalardpTLAQALAT---LRAEKLELA-GLPLPEIQIQPDSS  398
            +E+   +  + +  + L    +++++L +AL +    R ++L +  GL LP + I+    
Sbjct  349  KEDLRTF--SPSRQFVLQFHPGQNSALVDALVSEIRQRRNRLVVQFGLTLPSFIIEYVDH  406

Query  399  LGPDQFTLLLYQEPVLSMtlphlalldlaaptlRQVDHRE-TLPFGGITLQ------WIA  451
            L PD+F + +Y+ P+L             A  +RQ +  +   +++G T +      W++
Sbjct  407  LQPDEFRFTVYDVPMLK----ATFTQTHVAVDVRQFNGEDVPAAISGTTDRQEDQWVWLP  462

Query  452  QEQAEGSAAIGVNRYQGNARIAYLVSLALDRYGAEFIGVQEARYLMDQMEQRYGELVKEL  511
             EQ+   A+++     + + I+  +  AL+  G++FIG+QE++ +++ +E    EL +E+
Sbjct  463  AEQGGELATVS-----SMTLITERMERALQSCGPQFIGLQETKAILGWLESEQPELAQEM  517

Query  512  QRQLPVARVADVLQRLVAESVSIRDLRAIFEALVEWAPREKDPVMLAEYARLALRRHIIG  571
            QR L ++R + VLQRL +E V++R +R I E+L+E   +E+D  +L++Y R+AL+ +I  
Sbjct  518  QRVLTLTRFSAVLQRLASECVPLRAIRVIAETLIEHCQHERDTNVLTDYVRIALKSQIY-  576

Query  572  RQRHGQPWVKAWLIGSHIEQKVRESVRQTSAGSYSALSQQENQAILTEIHAALERSGAVN  631
            +Q  G   ++ WL+ ++ E  +R+++RQT + ++ ALS++ +Q ++ ++H A+   ++ +
Sbjct  577  HQYCGADGLQVWLLTPESEGLLRDGLRQTQTETFFALSNDISQMLVQQLHIAFPLRAPEQ  636

Query  632  TAIVTAIDIRRFIRKLIERELFTTAVLSFQELDDEAELKVLGHIELIGD  680
            + ++ A D+R  +R L+  E++  +VLSF E+ + A ++V+G+++L +D
Sbjct  637  AVLLVAQDLRSPLRTLLREEFYHVPVLSFAEISNAAKVRVMGRFDLEDD  685

47) esaV in NC_017309


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  328 bits (1229),  Expect = 1e-90, Method: Compositional matrix adjust.
 Identities = 261/649 (41%), Positives = 442/649 (69%), Gaps = 27/649 (4%)

Query  46   NLTLSITLLMMAVYIREPMEFSAFPSVLLITTLYRLALTISTSRLILLQHDAGEIVYTFG  105
            N+ +S  L+M+A+ +  P+ FS+FP+VLL+TT++RLAL+IST+RLILL++DAG+IV +FG
Sbjct  50   NICISCLLIMLAMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFG  109

Query  106  NFAVGGNLAVGLIVFAIITVVQFIVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGI  165
            +F VGGNLAVGL++F I+TVV+F+VITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +
Sbjct  110  QFVVGGNLAVGLVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANL  169

Query  166  IDATEARRQRALVQKESQLYGAMDGAMKFVKGDAIASiivilvnivggicvgvFMHEMSA  225
            I   EAR +R+ ++KESQL+GAMDGAMKFV+GDAIAS+I++ +N++GGI +GV  H M+A
Sbjct  170  ISVYEARNRRSELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVVQHGMTA  229

Query  226  GDAAATYAILSVGDGLIAQIPALLISIAAGIIVTRVPGEN---RRNLASELTEQILRQRQ  282
            GDA   Y++L++GDGLIAQIPALLIS++ G+I+TRVP  +     N++ E++EQI  Q +
Sbjct  230  GDALQLYTVLTIGDGLIAQIPALLISVTCGMIITRVPNTEAGVEANIGREIAEQITSQPK  289

Query  283  alwivaavlalfaalPGFPTlifiglgaglaaiaYSLRRKERQRSPLAAGHSASDHDESG  342
            A  I A  +  FAALPG PT +FI ++   +A +    ++ + ++    G  A   + +G
Sbjct  290  AWIIAAVAMLGFAALPGMPTGVFITIAIICGAGGMLQLQRAKPKAE-EQGAVAVAPEMNG  348

Query  343  QEGAPLLIGATplalrlpdalardpTLAQALAT---LRAEKLELA-GLPLPEIQIQPDSS  398
            +E+   +  + +  + L    +++++L +AL +    R ++L +  GL LP + I+    
Sbjct  349  KEDLRTF--SPSRQFVLQFHPGQNSALVDALVSEIRQRRNRLVVQFGLTLPSFIIEYVDH  406

Query  399  LGPDQFTLLLYQEPVLSMtlphlalldlaaptlRQVDHRE-TLPFGGITLQ------WIA  451
            L PD+F + +Y+ P+L             A  +RQ +  +   +++G T +      W++
Sbjct  407  LQPDEFRFTVYDVPMLK----ATFTQTHVAVDVRQFNGEDVPAAISGTTDRQEDQWVWLP  462

Query  452  QEQAEGSAAIGVNRYQGNARIAYLVSLALDRYGAEFIGVQEARYLMDQMEQRYGELVKEL  511
             EQ+   A+++     + + I+  +  AL+  G++FIG+QE++ +++ +E    EL +E+
Sbjct  463  AEQGGELATVS-----SMTLITERMERALQSCGPQFIGLQETKAILGWLESEQPELAQEM  517

Query  512  QRQLPVARVADVLQRLVAESVSIRDLRAIFEALVEWAPREKDPVMLAEYARLALRRHIIG  571
            QR L ++R + VLQRL +E V++R +R I E+L+E   +E+D  +L++Y R+AL+ +I  
Sbjct  518  QRVLTLTRFSAVLQRLASECVPLRAIRVIAETLIEHCQHERDTNVLTDYVRIALKSQIY-  576

Query  572  RQRHGQPWVKAWLIGSHIEQKVRESVRQTSAGSYSALSQQENQAILTEIHAALERSGAVN  631
            +Q  G   ++ WL+ ++ E  +R+++RQT + ++ ALS++ +Q ++ ++H A+   ++ +
Sbjct  577  HQYCGADGLQVWLLTPESEGLLRDGLRQTQTETFFALSNDISQMLVQQLHIAFPLRAPEQ  636

Query  632  TAIVTAIDIRRFIRKLIERELFTTAVLSFQELDDEAELKVLGHIELIGD  680
            + ++ A D+R  +R L+  E++  +VLSF E+ + A ++V+G+++L +D
Sbjct  637  AVLLVAQDLRSPLRTLLREEFYHVPVLSFAEISNAAKVRVMGRFDLEDD  685

48) ETAC_04215 in NC_020796


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  327 bits (1227),  Expect = 1e-90, Method: Compositional matrix adjust.
 Identities = 261/649 (41%), Positives = 442/649 (69%), Gaps = 27/649 (4%)

Query  46   NLTLSITLLMMAVYIREPMEFSAFPSVLLITTLYRLALTISTSRLILLQHDAGEIVYTFG  105
            N+ +S  L+M+A+ +  P+ FS+FP+VLL+TT++RLAL+IST+RLILL++DAG+IV +FG
Sbjct  50   NICISCLLIMLAMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFG  109

Query  106  NFAVGGNLAVGLIVFAIITVVQFIVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGI  165
            +F VGGNLAVGL++F I+TVV+F+VITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +
Sbjct  110  QFVVGGNLAVGLVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANL  169

Query  166  IDATEARRQRALVQKESQLYGAMDGAMKFVKGDAIASiivilvnivggicvgvFMHEMSA  225
            I   EAR +R+ ++KESQL+GAMDGAMKFV+GDAIAS+I++ +N++GGI +GV  H M+A
Sbjct  170  ISVYEARNRRSELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVVQHGMTA  229

Query  226  GDAAATYAILSVGDGLIAQIPALLISIAAGIIVTRVPGEN---RRNLASELTEQILRQRQ  282
            GDA   Y++L++GDGLIAQIPALLIS++ G+I+TRVP  +     N++ E++EQI  Q +
Sbjct  230  GDALQLYTVLTIGDGLIAQIPALLISVTCGMIITRVPNTEAGVEANIGREIAEQITSQPK  289

Query  283  alwivaavlalfaalPGFPTlifiglgaglaaiaYSLRRKERQRSPLAAGHSASDHDESG  342
            A  I A  +  FAALPG PT +FI ++   +A +    ++ + ++    G  A   + +G
Sbjct  290  AWIIAAVAMLGFAALPGMPTGVFITIAIICGAGGMLQLQRAKPKAE-EQGAVAVAPEMNG  348

Query  343  QEGAPLLIGATplalrlpdalardpTLAQALAT---LRAEKLELA-GLPLPEIQIQPDSG  398
            +E+   +  + +  + L    +++++L +AL +    R ++L +  GL LP + I+    
Sbjct  349  KEDLRTF--SPSRQFVLQFHPGQNSALVDALVSEIRQRRNRLVVQFGLTLPSFIIEYVDH  406

Query  399  LGPDQFTLLLYQEPVLSMtlphlalldlaaptlRQVDHRE-TLPFGGITLQ------WIA  451
            L PD+F + +Y+ P+L             A  +RQ +  +   +++G T +      W++
Sbjct  407  LQPDEFRFTVYDVPMLK----ATFTQTHVAVDVRQFNGEDVPAAISGTTDRQEDQWVWLP  462

Query  452  QEQAEGSAAIGVNRYQGNARIAYLVSLALDRYGAEFIGVQEARYLMDQMEQRYGELVKEL  511
             EQ+   A+++     + + I+  +  AL+  G++FIG+QE++ +++ +E    EL +E+
Sbjct  463  AEQGGELATVS-----SMTLITERMERALQSCGPQFIGLQETKAILGWLESEQPELAQEM  517

Query  512  QRQLPVARVADVLQRLVAESVSIRDLRAIFEALVEWAPREKDPVMLAEYARLALRRHIIG  571
            QR L ++R + VLQRL +E V++R +R I E+L+E   +E+D  +L++Y R+AL+ +I  
Sbjct  518  QRVLTLTRFSAVLQRLASECVPLRAIRVIAETLIEHCQHERDTNVLTDYVRIALKSQIY-  576

Query  572  RQRHGQPWVKAWLIGSHIEQKVRESVRQTSAGSYSALSQQENQAILTEIHAALERSGAVN  631
            +Q  G   ++ WL+ ++ E  +R+++RQT + ++ ALS++ +Q ++ ++H A+   ++ +
Sbjct  577  HQYCGADGLQVWLLTPESEGLLRDGLRQTQTETFFALSNDISQMLVQQLHIAFPLRAPEQ  636

Query  632  TAIVTAIDIRRFIRKLIERELFTTAVLSFQELDDEAELKVLGHIELIGD  680
            + ++ A D+R  +R L+  E++  +VLSF E+ + A ++V+G+++L +D
Sbjct  637  AVLLVAQDLRSPLRTLLREEFYHVPVLSFAEISNAAKVRVMGRFDLEDD  685

49) escV in NC_005085


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  324 bits (1215),  Expect = 1e-89, Method: Compositional matrix adjust.
 Identities = 280/697 (41%), Positives = 481/697 (70%), Gaps = 27/697 (3%)

Query  1    MNQIKSFLMMAA----GRQDivlavmllvavfmmiiPLPTGLVDFMIALNLMIAVILLMM  56
            MNQI +FL M A     R ++V A  ++  VFMMI PLPTGLVD +IA+N+ I+ +L+M+
Sbjct  1    MNQIINFLNMVALSAMRRSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIML  60

Query  57   SLYIREPLEFSAFPSVLLITTLYRLALTISTTRLILLQADAGEIVYTFGSFAVGGNLGVG  116
            ++ +  PL FS+FP+VLL+TT++RLAL+ISTTRLILL+ DAG+IV +FG F VGGNL+VG
Sbjct  61   AMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVG  120

Query  117  LivfviitvvqfivitKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDANEARRLRG  176
            L++F+I+TVV+F+VITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +I   EAR  R+
Sbjct  121  LVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRS  180

Query  177  LVQKESQLYGAMDGAMKFVKgdaiagiiiilvnilggTAIGVMMHGMSASAALSTYAILS  236
             ++KESQL+GAMDGAMKFV+GDAIA++II+ +N++GG +IGV+ HGM+A+ AL  Y++L+
Sbjct  181  ELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLT  240

Query  237  IGDGLIGQIPALLISITAGTIVTRVPGEQ---RLNLASDLTDQIGKQPQalllaasvllv  293
            IGDGLI+QIPALLIS+T G I+TRVP  +     N++ ++++QI  QP+A ++AA  +L 
Sbjct  241  IGDGLIAQIPALLISVTCGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIAAVAMLG  300

Query  294  falIPGFPAIYFIILAAMvsaaawwvkkrkraarsdstgspssesGADAGGETANMSPGA  353
            FA +PG P+  FI + A++ +A+  ++ ++  ++++  G+ +  +  ++  +    SP +
Sbjct  301  FAALPGMPTGVFITI-AIICGAGGMLQLQRAKPKAEEQGAVAVAPEMNGKEDLRTFSP-S  358

Query  354  TPLMMRLSPDLIRSSRLPALLDTFRHGK---FEQLGIPLPEIQLQKDASLAAGTLQILLY  410
              +++++ P+   S+ + AL+  +R+ +     Q+G+ LP + ++    L ++ +++ +Y
Sbjct  359  RQFVLQFHPG-QNSALVDALVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFTVY  417

Query  411  QEPVLTVSLPERLLLADI---ASPKLPQ--SEQTDKLPFGNLSLQWQSPTQKEALSAIGV  465
            + P+L  ++ +  +  D+    +  +P   S  TD+    +    W ++ Q   L++++ 
Sbjct  418  DVPMLKATFTQTHVAVDVRQFNGEDVPAAISGTTDR---QEDQWVWLPAEQGGELATVS-  473

Query  466  QLHQDEDRIVHCLSIIIDRYAAEFVGVQETRFLMDAMESKYAELIKEVQRQLPIGRIADV  525
             +    +R+ + L    +  +++F+G+QET+ +++ +ES  +EL +E+QR L + R++ V
Sbjct  474  SMTLITERMERAL----QSCGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRFSAV  529

Query  526  LQRLVAEGVSIRDLRSVFEALIEWAPREKDPVMLLEYVRMGLRRHIVTRYRAGQPWISGW  585
            LQRL +E V++R +R + E+LIE   +E+D  +L +YVR++L+ +I  +Y +++  +  W
Sbjct  530  LQRLASECVPLRAIRVIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADG-LQVW  588

Query  586  MIGDTIEGMVREAIRQTSAGSYSALDPEHNQAIMSCIREAVGDAEKRNQVLITAIDVRRF  645
            ++    EG++R+++RQT + ++ AL  + +Q ++  ++ A       + VL+ A D+R  
Sbjct  589  LLTPESEGLLRDGLRQTQTETFFALSNDISQMLVQQLHIAFPLRAPEQAVLLVAQDLRSP  648

Query  646  LRKVVEREFFNLHVLSFQEIGEEAELRVVGNIDLIGE  682
            LR ++  EF+++ VLSF EI++ A +RV+G +DL ++
Sbjct  649  LRTLLREEFYHVPVLSFAEISNAAKVRVMGRFDLEDD  685

50) A1122_03810 in NC_017168


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  317 bits (1190),  Expect = 1e-87, Method: Compositional matrix adjust.
 Identities = 275/684 (41%), Positives = 450/684 (66%), Gaps = 34/684 (4%)

Query  16   RQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSll  75
            R ++  A  ++  VFMMI PLPT +VD+LIA+N+ +S +L+M+++ L  PL FS FP++L
Sbjct  18   RSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIMLAMHLPRPLAFSTFPAVL  77

Query  76   littlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfivitK  135
            L+TT++RLAL+ISTTRL+LL++DAG+IVEAFGQFVVGGNLAVG++IF I+TVV+F+VITK
Sbjct  78   LLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVGLVIFLILTVVNFLVITK  137

Query  136  GSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMK  195
            GSERVAEV+ARF+LD+MPGKQMSID+D+RA  I   EA+  R  ++KES+LFGAMDGAMK
Sbjct  138  GSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRSELNKESQLFGAMDGAMK  197

Query  196  FVKGDAiagiiviliniiggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLISIT  255
            FV+GDAIA++I++ IN+IGGI+IGV+QH M+A +A++ Y+VL+IGDGL AQIP+LLIS+T
Sbjct  198  FVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLTIGDGLIAQIPALLISVT  257

Query  256  AGIIVTRVPGSN---KQSLANELAVQVGRQPDALWLAAAI-LTVFALLPGFPFLIFITLa  311
             G+I+TRVP ++     +++ E+A Q+  QP A W+ AA+ +  FA LPG P  +FIT+A
Sbjct  258  CGMIITRVPNTEAGVEANIGREIAEQITSQPKA-WIIAAVAMLGFAALPGMPTGVFITIA  316

Query  312  aavaapaFL-LYRKNRRISQDGRANGGSEEGGATGQRMTPGAVPLMLHCASNLHHP---H  367
               +A + L L R + +  ++G    ++E  G  + R  + +  ++L+  +  + +    
Sbjct  317  IICGAGGMLQLQRAKPKAEEQGAVAVAPEMNGKEDLRTFSPSRQFVLQFHPGQNSALVDA  376

Query  368  LGRDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTRP  427
            L  +I   R R   ++G+ LP   I     L  + +   VY+  +L   +    + +   
Sbjct  377  LVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFTVYDVPMLKATFTQTHVAVD--  434

Query  428  CSSLVTNNQVLGAKMGSFD-------WLDAKQAMQARTLGIPYVEGHQRIITCLTRVFER  480
                   ++V +A  G+ D       WL A Q+ +     ++ V +   I   + R ++ 
Sbjct  435  -VRQFNGEDVPAAISGTTDRQEDQWVWLPAEQGGE-----LATVSSMTLITERMERALQS  488

Query  481  YTAEFIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTIFG  540
              ++FIG+QET+ +++ +E+   EL +E+QR + + + + +LQRL  E +++R +R I  
Sbjct  489  CGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQRLASECVPLRAIRVIAE  548

Query  541  ALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHN---KTWISVLRLGDGVEHLIRDSIRQ  597
            +L+     E+D  +LT+YVRIAL+ ++ +++      + W+    L    E L+RD++RQ
Sbjct  549  TLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADGLQVWL----LTPESEGLLRDGLRQ  604

Query  598  TSSGTYSALEERQSLLILNKIKNAFA--ENQDAVLLTTLDVRRFVRKIIERDLFVLPVLS  655
            T + T+ AL +  S ++++++  AF+    ++AVLL + D+R  +R ++  +++ +PVLS
Sbjct  605  TQTETFFALSNDISQMLVQQLHIAFPLRAPEQAVLLVAQDLRSPLRTLLREEFYHVPVLS  664

Query  656  WQELGDEMNLKVAGTIELIGDELD  679
              E+++  +++V G ++L  D+L+
Sbjct  665  FAEISNAAKVRVMGRFDL-EDDLE  687

51) YPC_0742 in NC_017265


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  317 bits (1190),  Expect = 1e-87, Method: Compositional matrix adjust.
 Identities = 275/684 (41%), Positives = 450/684 (66%), Gaps = 34/684 (4%)

Query  16   RQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSll  75
            R ++  A  ++  VFMMI PLPT +VD+LIA+N+ +S +L+M+++ L  PL FS FP++L
Sbjct  18   RSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIMLAMHLPRPLAFSTFPAVL  77

Query  76   littlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfivitK  135
            L+TT++RLAL+ISTTRL+LL++DAG+IVEAFGQFVVGGNLAVG++IF I+TVV+F+VITK
Sbjct  78   LLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVGLVIFLILTVVNFLVITK  137

Query  136  GSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMK  195
            GSERVAEV+ARF+LD+MPGKQMSID+D+RA  I   EA+  R  ++KES+LFGAMDGAMK
Sbjct  138  GSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRSELNKESQLFGAMDGAMK  197

Query  196  FVKGDAiagiiviliniiggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLISIT  255
            FV+GDAIA++I++ IN+IGGI+IGV+QH M+A +A++ Y+VL+IGDGL AQIP+LLIS+T
Sbjct  198  FVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLTIGDGLIAQIPALLISVT  257

Query  256  AGIIVTRVPGSN---KQSLANELAVQVGRQPDALWLAAAI-LTVFALLPGFPFLIFITLa  311
             G+I+TRVP ++     +++ E+A Q+  QP A W+ AA+ +  FA LPG P  +FIT+A
Sbjct  258  CGMIITRVPNTEAGVEANIGREIAEQITSQPKA-WIIAAVAMLGFAALPGMPTGVFITIA  316

Query  312  aavaapaFL-LYRKNRRISQDGRANGGSEEGGATGQRMTPGAVPLMLHCASNLHHP---H  367
               +A + L L R + +  ++G    ++E  G  + R  + +  ++L+  +  + +    
Sbjct  317  IICGAGGMLQLQRAKPKAEEQGAVAVAPEMNGKEDLRTFSPSRQFVLQFHPGQNSALVDA  376

Query  368  LGRDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTRP  427
            L  +I   R R   ++G+ LP   I     L  + +   VY+  +L   +    + +   
Sbjct  377  LVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFTVYDVPMLKATFTQTHVAVD--  434

Query  428  CSSLVTNNQVLGAKMGSFD-------WLDAKQAMQARTLGIPYVEGHQRIITCLTRVFER  480
                   ++V +A  G+ D       WL A Q+ +     ++ V +   I   + R ++ 
Sbjct  435  -VRQFNGEDVPAAISGTTDRQEDQWVWLPAEQGGE-----LATVSSMTLITERMERALQS  488

Query  481  YTAEFIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTIFG  540
              ++FIG+QET+ +++ +E+   EL +E+QR + + + + +LQRL  E +++R +R I  
Sbjct  489  CGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQRLASECVPLRAIRVIAE  548

Query  541  ALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHN---KTWISVLRLGDGVEHLIRDSIRQ  597
            +L+     E+D  +LT+YVRIAL+ ++ +++      + W+    L    E L+RD++RQ
Sbjct  549  TLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADGLQVWL----LTPESEGLLRDGLRQ  604

Query  598  TSSGTYSALEERQSLLILNKIKNAFA--ENQDAVLLTTLDVRRFVRKIIERDLFVLPVLS  655
            T + T+ AL +  S ++++++  AF+    ++AVLL + D+R  +R ++  +++ +PVLS
Sbjct  605  TQTETFFALSNDISQMLVQQLHIAFPLRAPEQAVLLVAQDLRSPLRTLLREEFYHVPVLS  664

Query  656  WQELGDEMNLKVAGTIELIGDELD  679
              E+++  +++V G ++L  D+L+
Sbjct  665  FAEISNAAKVRVMGRFDL-EDDLE  687

52) YPO0266 in NC_003143


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  317 bits (1190),  Expect = 1e-87, Method: Compositional matrix adjust.
 Identities = 275/684 (41%), Positives = 450/684 (66%), Gaps = 34/684 (4%)

Query  16   RQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSll  75
            R ++  A  ++  VFMMI PLPT +VD+LIA+N+ +S +L+M+++ L  PL FS FP++L
Sbjct  18   RSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIMLAMHLPRPLAFSTFPAVL  77

Query  76   littlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfivitK  135
            L+TT++RLAL+ISTTRL+LL++DAG+IVEAFGQFVVGGNLAVG++IF I+TVV+F+VITK
Sbjct  78   LLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVGLVIFLILTVVNFLVITK  137

Query  136  GSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMK  195
            GSERVAEV+ARF+LD+MPGKQMSID+D+RA  I   EA+  R  ++KES+LFGAMDGAMK
Sbjct  138  GSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRSELNKESQLFGAMDGAMK  197

Query  196  FVKGDAiagiiviliniiggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLISIT  255
            FV+GDAIA++I++ IN+IGGI+IGV+QH M+A +A++ Y+VL+IGDGL AQIP+LLIS+T
Sbjct  198  FVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLTIGDGLIAQIPALLISVT  257

Query  256  AGIIVTRVPGSN---KQSLANELAVQVGRQPDALWLAAAI-LTVFALLPGFPFLIFITLa  311
             G+I+TRVP ++     +++ E+A Q+  QP A W+ AA+ +  FA LPG P  +FIT+A
Sbjct  258  CGMIITRVPNTEAGVEANIGREIAEQITSQPKA-WIIAAVAMLGFAALPGMPTGVFITIA  316

Query  312  aavaapaFL-LYRKNRRISQDGRANGGSEEGGATGQRMTPGAVPLMLHCASNLHHP---H  367
               +A + L L R + +  ++G    ++E  G  + R  + +  ++L+  +  + +    
Sbjct  317  IICGAGGMLQLQRAKPKAEEQGAVAVAPEMNGKEDLRTFSPSRQFVLQFHPGQNSALVDA  376

Query  368  LGRDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTRP  427
            L  +I   R R   ++G+ LP   I     L  + +   VY+  +L   +    + +   
Sbjct  377  LVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFTVYDVPMLKATFTQTHVAVD--  434

Query  428  CSSLVTNNQVLGAKMGSFD-------WLDAKQAMQARTLGIPYVEGHQRIITCLTRVFER  480
                   ++V +A  G+ D       WL A Q+ +     ++ V +   I   + R ++ 
Sbjct  435  -VRQFNGEDVPAAISGTTDRQEDQWVWLPAEQGGE-----LATVSSMTLITERMERALQS  488

Query  481  YTAEFIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTIFG  540
              ++FIG+QET+ +++ +E+   EL +E+QR + + + + +LQRL  E +++R +R I  
Sbjct  489  CGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQRLASECVPLRAIRVIAE  548

Query  541  ALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHN---KTWISVLRLGDGVEHLIRDSIRQ  597
            +L+     E+D  +LT+YVRIAL+ ++ +++      + W+    L    E L+RD++RQ
Sbjct  549  TLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADGLQVWL----LTPESEGLLRDGLRQ  604

Query  598  TSSGTYSALEERQSLLILNKIKNAFA--ENQDAVLLTTLDVRRFVRKIIERDLFVLPVLS  655
            T + T+ AL +  S ++++++  AF+    ++AVLL + D+R  +R ++  +++ +PVLS
Sbjct  605  TQTETFFALSNDISQMLVQQLHIAFPLRAPEQAVLLVAQDLRSPLRTLLREEFYHVPVLS  664

Query  656  WQELGDEMNLKVAGTIELIGDELD  679
              E+++  +++V G ++L  D+L+
Sbjct  665  FAEISNAAKVRVMGRFDL-EDDLE  687

53) YPD4_0230 in NC_017154


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  317 bits (1190),  Expect = 1e-87, Method: Compositional matrix adjust.
 Identities = 275/684 (41%), Positives = 450/684 (66%), Gaps = 34/684 (4%)

Query  16   RQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSll  75
            R ++  A  ++  VFMMI PLPT +VD+LIA+N+ +S +L+M+++ L  PL FS FP++L
Sbjct  18   RSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIMLAMHLPRPLAFSTFPAVL  77

Query  76   littlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfivitK  135
            L+TT++RLAL+ISTTRL+LL++DAG+IVEAFGQFVVGGNLAVG++IF I+TVV+F+VITK
Sbjct  78   LLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVGLVIFLILTVVNFLVITK  137

Query  136  GSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMK  195
            GSERVAEV+ARF+LD+MPGKQMSID+D+RA  I   EA+  R  ++KES+LFGAMDGAMK
Sbjct  138  GSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRSELNKESQLFGAMDGAMK  197

Query  196  FVKGDAiagiiviliniiggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLISIT  255
            FV+GDAIA++I++ IN+IGGI+IGV+QH M+A +A++ Y+VL+IGDGL AQIP+LLIS+T
Sbjct  198  FVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLTIGDGLIAQIPALLISVT  257

Query  256  AGIIVTRVPGSN---KQSLANELAVQVGRQPDALWLAAAI-LTVFALLPGFPFLIFITLa  311
             G+I+TRVP ++     +++ E+A Q+  QP A W+ AA+ +  FA LPG P  +FIT+A
Sbjct  258  CGMIITRVPNTEAGVEANIGREIAEQITSQPKA-WIIAAVAMLGFAALPGMPTGVFITIA  316

Query  312  aavaapaFL-LYRKNRRISQDGRANGGSEEGGATGQRMTPGAVPLMLHCASNLHHP---H  367
               +A + L L R + +  ++G    ++E  G  + R  + +  ++L+  +  + +    
Sbjct  317  IICGAGGMLQLQRAKPKAEEQGAVAVAPEMNGKEDLRTFSPSRQFVLQFHPGQNSALVDA  376

Query  368  LGRDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTRP  427
            L  +I   R R   ++G+ LP   I     L  + +   VY+  +L   +    + +   
Sbjct  377  LVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFTVYDVPMLKATFTQTHVAVD--  434

Query  428  CSSLVTNNQVLGAKMGSFD-------WLDAKQAMQARTLGIPYVEGHQRIITCLTRVFER  480
                   ++V +A  G+ D       WL A Q+ +     ++ V +   I   + R ++ 
Sbjct  435  -VRQFNGEDVPAAISGTTDRQEDQWVWLPAEQGGE-----LATVSSMTLITERMERALQS  488

Query  481  YTAEFIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTIFG  540
              ++FIG+QET+ +++ +E+   EL +E+QR + + + + +LQRL  E +++R +R I  
Sbjct  489  CGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQRLASECVPLRAIRVIAE  548

Query  541  ALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHN---KTWISVLRLGDGVEHLIRDSIRQ  597
            +L+     E+D  +LT+YVRIAL+ ++ +++      + W+    L    E L+RD++RQ
Sbjct  549  TLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADGLQVWL----LTPESEGLLRDGLRQ  604

Query  598  TSSGTYSALEERQSLLILNKIKNAFA--ENQDAVLLTTLDVRRFVRKIIERDLFVLPVLS  655
            T + T+ AL +  S ++++++  AF+    ++AVLL + D+R  +R ++  +++ +PVLS
Sbjct  605  TQTETFFALSNDISQMLVQQLHIAFPLRAPEQAVLLVAQDLRSPLRTLLREEFYHVPVLS  664

Query  656  WQELGDEMNLKVAGTIELIGDELD  679
              E+++  +++V G ++L  D+L+
Sbjct  665  FAEISNAAKVRVMGRFDL-EDDLE  687

54) YPD8_0235 in NC_017160


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  317 bits (1190),  Expect = 1e-87, Method: Compositional matrix adjust.
 Identities = 275/684 (41%), Positives = 450/684 (66%), Gaps = 34/684 (4%)

Query  16   RQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSll  75
            R ++  A  ++  VFMMI PLPT +VD+LIA+N+ +S +L+M+++ L  PL FS FP++L
Sbjct  18   RSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIMLAMHLPRPLAFSTFPAVL  77

Query  76   littlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfivitK  135
            L+TT++RLAL+ISTTRL+LL++DAG+IVEAFGQFVVGGNLAVG++IF I+TVV+F+VITK
Sbjct  78   LLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVGLVIFLILTVVNFLVITK  137

Query  136  GSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMK  195
            GSERVAEV+ARF+LD+MPGKQMSID+D+RA  I   EA+  R  ++KES+LFGAMDGAMK
Sbjct  138  GSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRSELNKESQLFGAMDGAMK  197

Query  196  FVKGDAiagiiviliniiggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLISIT  255
            FV+GDAIA++I++ IN+IGGI+IGV+QH M+A +A++ Y+VL+IGDGL AQIP+LLIS+T
Sbjct  198  FVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLTIGDGLIAQIPALLISVT  257

Query  256  AGIIVTRVPGSN---KQSLANELAVQVGRQPDALWLAAAI-LTVFALLPGFPFLIFITLa  311
             G+I+TRVP ++     +++ E+A Q+  QP A W+ AA+ +  FA LPG P  +FIT+A
Sbjct  258  CGMIITRVPNTEAGVEANIGREIAEQITSQPKA-WIIAAVAMLGFAALPGMPTGVFITIA  316

Query  312  aavaapaFL-LYRKNRRISQDGRANGGSEEGGATGQRMTPGAVPLMLHCASNLHHP---H  367
               +A + L L R + +  ++G    ++E  G  + R  + +  ++L+  +  + +    
Sbjct  317  IICGAGGMLQLQRAKPKAEEQGAVAVAPEMNGKEDLRTFSPSRQFVLQFHPGQNSALVDA  376

Query  368  LGRDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTRP  427
            L  +I   R R   ++G+ LP   I     L  + +   VY+  +L   +    + +   
Sbjct  377  LVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFTVYDVPMLKATFTQTHVAVD--  434

Query  428  CSSLVTNNQVLGAKMGSFD-------WLDAKQAMQARTLGIPYVEGHQRIITCLTRVFER  480
                   ++V +A  G+ D       WL A Q+ +     ++ V +   I   + R ++ 
Sbjct  435  -VRQFNGEDVPAAISGTTDRQEDQWVWLPAEQGGE-----LATVSSMTLITERMERALQS  488

Query  481  YTAEFIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTIFG  540
              ++FIG+QET+ +++ +E+   EL +E+QR + + + + +LQRL  E +++R +R I  
Sbjct  489  CGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQRLASECVPLRAIRVIAE  548

Query  541  ALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHN---KTWISVLRLGDGVEHLIRDSIRQ  597
            +L+     E+D  +LT+YVRIAL+ ++ +++      + W+    L    E L+RD++RQ
Sbjct  549  TLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADGLQVWL----LTPESEGLLRDGLRQ  604

Query  598  TSSGTYSALEERQSLLILNKIKNAFA--ENQDAVLLTTLDVRRFVRKIIERDLFVLPVLS  655
            T + T+ AL +  S ++++++  AF+    ++AVLL + D+R  +R ++  +++ +PVLS
Sbjct  605  TQTETFFALSNDISQMLVQQLHIAFPLRAPEQAVLLVAQDLRSPLRTLLREEFYHVPVLS  664

Query  656  WQELGDEMNLKVAGTIELIGDELD  679
              E+++  +++V G ++L  D+L+
Sbjct  665  FAEISNAAKVRVMGRFDL-EDDLE  687

55) YPZ3_0228 in NC_014029


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  317 bits (1190),  Expect = 1e-87, Method: Compositional matrix adjust.
 Identities = 275/684 (41%), Positives = 450/684 (66%), Gaps = 34/684 (4%)

Query  16   RQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSll  75
            R ++  A  ++  VFMMI PLPT +VD+LIA+N+ +S +L+M+++ L  PL FS FP++L
Sbjct  18   RSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIMLAMHLPRPLAFSTFPAVL  77

Query  76   littlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfivitK  135
            L+TT++RLAL+ISTTRL+LL++DAG+IVEAFGQFVVGGNLAVG++IF I+TVV+F+VITK
Sbjct  78   LLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVGLVIFLILTVVNFLVITK  137

Query  136  GSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMK  195
            GSERVAEV+ARF+LD+MPGKQMSID+D+RA  I   EA+  R  ++KES+LFGAMDGAMK
Sbjct  138  GSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRSELNKESQLFGAMDGAMK  197

Query  196  FVKGDAiagiiviliniiggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLISIT  255
            FV+GDAIA++I++ IN+IGGI+IGV+QH M+A +A++ Y+VL+IGDGL AQIP+LLIS+T
Sbjct  198  FVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLTIGDGLIAQIPALLISVT  257

Query  256  AGIIVTRVPGSN---KQSLANELAVQVGRQPDALWLAAAI-LTVFALLPGFPFLIFITLa  311
             G+I+TRVP ++     +++ E+A Q+  QP A W+ AA+ +  FA LPG P  +FIT+A
Sbjct  258  CGMIITRVPNTEAGVEANIGREIAEQITSQPKA-WIIAAVAMLGFAALPGMPTGVFITIA  316

Query  312  aavaapaFL-LYRKNRRISQDGRANGGSEEGGATGQRMTPGAVPLMLHCASNLHHP---H  367
               +A + L L R + +  ++G    ++E  G  + R  + +  ++L+  +  + +    
Sbjct  317  IICGAGGMLQLQRAKPKAEEQGAVAVAPEMNGKEDLRTFSPSRQFVLQFHPGQNSALVDA  376

Query  368  LGRDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTRP  427
            L  +I   R R   ++G+ LP   I     L  + +   VY+  +L   +    + +   
Sbjct  377  LVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFTVYDVPMLKATFTQTHVAVD--  434

Query  428  CSSLVTNNQVLGAKMGSFD-------WLDAKQAMQARTLGIPYVEGHQRIITCLTRVFER  480
                   ++V +A  G+ D       WL A Q+ +     ++ V +   I   + R ++ 
Sbjct  435  -VRQFNGEDVPAAISGTTDRQEDQWVWLPAEQGGE-----LATVSSMTLITERMERALQS  488

Query  481  YTAEFIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTIFG  540
              ++FIG+QET+ +++ +E+   EL +E+QR + + + + +LQRL  E +++R +R I  
Sbjct  489  CGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQRLASECVPLRAIRVIAE  548

Query  541  ALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHN---KTWISVLRLGDGVEHLIRDSIRQ  597
            +L+     E+D  +LT+YVRIAL+ ++ +++      + W+    L    E L+RD++RQ
Sbjct  549  TLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADGLQVWL----LTPESEGLLRDGLRQ  604

Query  598  TSSGTYSALEERQSLLILNKIKNAFA--ENQDAVLLTTLDVRRFVRKIIERDLFVLPVLS  655
            T + T+ AL +  S ++++++  AF+    ++AVLL + D+R  +R ++  +++ +PVLS
Sbjct  605  TQTETFFALSNDISQMLVQQLHIAFPLRAPEQAVLLVAQDLRSPLRTLLREEFYHVPVLS  664

Query  656  WQELGDEMNLKVAGTIELIGDELD  679
              E+++  +++V G ++L  D+L+
Sbjct  665  FAEISNAAKVRVMGRFDL-EDDLE  687

56) YPA_4017 in NC_008150


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  317 bits (1189),  Expect = 2e-87, Method: Compositional matrix adjust.
 Identities = 275/684 (41%), Positives = 450/684 (66%), Gaps = 34/684 (4%)

Query  5    RQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSll  64
            R ++  A  ++  VFMMI PLPT +VD+LIA+N+ +S +L+M+++ L  PL FS FP++L
Sbjct  18   RSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIMLAMHLPRPLAFSTFPAVL  77

Query  65   littlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfivitK  124
            L+TT++RLAL+ISTTRL+LL++DAG+IVEAFGQFVVGGNLAVG++IF I+TVV+F+VITK
Sbjct  78   LLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVGLVIFLILTVVNFLVITK  137

Query  125  GSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMK  184
            GSERVAEV+ARF+LD+MPGKQMSID+D+RA  I   EA+  R  ++KES+LFGAMDGAMK
Sbjct  138  GSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRSELNKESQLFGAMDGAMK  197

Query  185  FVKGDAiagiiviliniiggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLISIT  244
            FV+GDAIA++I++ IN+IGGI+IGV+QH M+A +A++ Y+VL+IGDGL AQIP+LLIS+T
Sbjct  198  FVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLTIGDGLIAQIPALLISVT  257

Query  245  AGIIVTRVPGSN---KQSLANELAVQVGRQPDALWLAAAI-LTVFALLPGFPFLIFITLa  300
             G+I+TRVP ++     +++ E+A Q+  QP A W+ AA+ +  FA LPG P  +FIT+A
Sbjct  258  CGMIITRVPNTEAGVEANIGREIAEQITSQPKA-WIIAAVAMLGFAALPGMPTGVFITIA  316

Query  301  aavaapaFL-LYRKNRRISQDGRANGGSEEGGATGQRMTPGAVPLMLHCASNLHHP---H  356
               +A + L L R + +  ++G    ++E  G  + R  + +  ++L+  +  + +    
Sbjct  317  IICGAGGMLQLQRAKPKAEEQGAVAVAPEMNGKEDLRTFSPSRQFVLQFHPGQNSALVDA  376

Query  357  LGRDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTRP  416
            L  +I   R R   ++G+ LP   I     L  + +   VY+  +L   +    + +   
Sbjct  377  LVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFTVYDVPMLKATFTQTHVAVD--  434

Query  417  CSSLVTNNQVLGAKMGSFD-------WLDAKQAMQARTLGIPYVEGHQRIITCLTRVFER  469
                   ++V +A  G+ D       WL A Q+ +     ++ V +   I   + R ++ 
Sbjct  435  -VRQFNGEDVPAAISGTTDRQEDQWVWLPAEQGGE-----LATVSSMTLITERMERALQS  488

Query  470  YTAEFIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTIFG  529
              ++FIG+QET+ +++ +E+   EL +E+QR + + + + +LQRL  E +++R +R I  
Sbjct  489  CGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQRLASECVPLRAIRVIAE  548

Query  530  ALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHN---KTWISVLRLGDGVEHLIRDSIRQ  586
            +L+     E+D  +LT+YVRIAL+ ++ +++      + W+    L    E L+RD++RQ
Sbjct  549  TLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADGLQVWL----LTPESEGLLRDGLRQ  604

Query  587  TSSGTYSALEERQSLLILNKIKNAFA--ENQDAVLLTTLDVRRFVRKIIERDLFVLPVLS  644
            T + T+ AL +  S ++++++  AF+    ++AVLL + D+R  +R ++  +++ +PVLS
Sbjct  605  TQTETFFALSNDISQMLVQQLHIAFPLRAPEQAVLLVAQDLRSPLRTLLREEFYHVPVLS  664

Query  645  WQELGDEMNLKVAGTIELIGDELD  668
              E+++  +++V G ++L  D+L+
Sbjct  665  FAEISNAAKVRVMGRFDL-EDDLE  687

57) flhA1 in NC_005810


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  317 bits (1188),  Expect = 2e-87, Method: Compositional matrix adjust.
 Identities = 275/684 (41%), Positives = 450/684 (66%), Gaps = 34/684 (4%)

Query  18   RQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSll  77
            R ++  A  ++  VFMMI PLPT +VD+LIA+N+ +S +L+M+++ L  PL FS FP++L
Sbjct  18   RSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIMLAMHLPRPLAFSTFPAVL  77

Query  78   littlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfivitK  137
            L+TT++RLAL+ISTTRL+LL++DAG+IVEAFGQFVVGGNLAVG++IF I+TVV+F+VITK
Sbjct  78   LLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVGLVIFLILTVVNFLVITK  137

Query  138  GSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMK  197
            GSERVAEV+ARF+LD+MPGKQMSID+D+RA  I   EA+  R  ++KES+LFGAMDGAMK
Sbjct  138  GSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRSELNKESQLFGAMDGAMK  197

Query  198  FVKGDAiagiiviliniiggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLISIT  257
            FV+GDAIA++I++ IN+IGGI+IGV+QH M+A +A++ Y+VL+IGDGL AQIP+LLIS+T
Sbjct  198  FVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLTIGDGLIAQIPALLISVT  257

Query  258  AGIIVTRVPGSN---KQSLANELAVQVGRQPDALWLAAAI-LTVFALLPGFPFLIFITLa  313
             G+I+TRVP ++     +++ E+A Q+  QP A W+ AA+ +  FA LPG P  +FIT+A
Sbjct  258  CGMIITRVPNTEAGVEANIGREIAEQITSQPKA-WIIAAVAMLGFAALPGMPTGVFITIA  316

Query  314  aavaapaFL-LYRKNRRISQDGRANGGSEEGGATGQRMTPGAVPLMLHCASNLHHP---H  369
               +A + L L R + +  ++G    ++E  G  + R  + +  ++L+  +  + +    
Sbjct  317  IICGAGGMLQLQRAKPKAEEQGAVAVAPEMNGKEDLRTFSPSRQFVLQFHPGQNSALVDA  376

Query  370  LGRDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTRP  429
            L  +I   R R   ++G+ LP   I     L  + +   VY+  +L   +    + +   
Sbjct  377  LVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFTVYDVPMLKATFTQTHVAVD--  434

Query  430  CSSLVTNNQVLGAKMGSFD-------WLDAKQAMQARTLGIPYVEGHQRIITCLTRVFER  482
                   ++V +A  G+ D       WL A Q+ +     ++ V +   I   + R ++ 
Sbjct  435  -VRQFNGEDVPAAISGTTDRQEDQWVWLPAEQGGE-----LATVSSMTLITERMERALQS  488

Query  483  YTAEFIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTIFG  542
              ++FIG+QET+ +++ +E+   EL +E+QR + + + + +LQRL  E +++R +R I  
Sbjct  489  CGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQRLASECVPLRAIRVIAE  548

Query  543  ALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHN---KTWISVLRLGDGVEHLIRDSIRQ  599
            +L+     E+D  +LT+YVRIAL+ ++ +++      + W+    L    E L+RD++RQ
Sbjct  549  TLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADGLQVWL----LTPESEGLLRDGLRQ  604

Query  600  TSSGTYSALEERQSLLILNKIKNAFA--ENQDAVLLTTLDVRRFVRKIIERDLFVLPVLS  657
            T + T+ AL +  S ++++++  AF+    ++AVLL + D+R  +R ++  +++ +PVLS
Sbjct  605  TQTETFFALSNDISQMLVQQLHIAFPLRAPEQAVLLVAQDLRSPLRTLLREEFYHVPVLS  664

Query  658  WQELGDEMNLKVAGTIELIGDELD  681
              E+++  +++V G ++L  D+L+
Sbjct  665  FAEISNAAKVRVMGRFDL-EDDLE  687

58) y0525 in NC_004088


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  317 bits (1188),  Expect = 2e-87, Method: Compositional matrix adjust.
 Identities = 275/684 (41%), Positives = 450/684 (66%), Gaps = 34/684 (4%)

Query  18   RQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSll  77
            R ++  A  ++  VFMMI PLPT +VD+LIA+N+ +S +L+M+++ L  PL FS FP++L
Sbjct  18   RSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIMLAMHLPRPLAFSTFPAVL  77

Query  78   littlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfivitK  137
            L+TT++RLAL+ISTTRL+LL++DAG+IVEAFGQFVVGGNLAVG++IF I+TVV+F+VITK
Sbjct  78   LLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVGLVIFLILTVVNFLVITK  137

Query  138  GSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMK  197
            GSERVAEV+ARF+LD+MPGKQMSID+D+RA  I   EA+  R  ++KES+LFGAMDGAMK
Sbjct  138  GSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRSELNKESQLFGAMDGAMK  197

Query  198  FVKGDAiagiiviliniiggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLISIT  257
            FV+GDAIA++I++ IN+IGGI+IGV+QH M+A +A++ Y+VL+IGDGL AQIP+LLIS+T
Sbjct  198  FVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLTIGDGLIAQIPALLISVT  257

Query  258  AGIIVTRVPGSN---KQSLANELAVQVGRQPDALWLAAAI-LTVFALLPGFPFLIFITLa  313
             G+I+TRVP ++     +++ E+A Q+  QP A W+ AA+ +  FA LPG P  +FIT+A
Sbjct  258  CGMIITRVPNTEAGVEANIGREIAEQITSQPKA-WIIAAVAMLGFAALPGMPTGVFITIA  316

Query  314  aavaapaFL-LYRKNRRISQDGRANGGSEEGGATGQRMTPGAVPLMLHCASNLHHP---H  369
               +A + L L R + +  ++G    ++E  G  + R  + +  ++L+  +  + +    
Sbjct  317  IICGAGGMLQLQRAKPKAEEQGAVAVAPEMNGKEDLRTFSPSRQFVLQFHPGQNSALVDA  376

Query  370  LGRDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTRP  429
            L  +I   R R   ++G+ LP   I     L  + +   VY+  +L   +    + +   
Sbjct  377  LVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFTVYDVPMLKATFTQTHVAVD--  434

Query  430  CSSLVTNNQVLGAKMGSFD-------WLDAKQAMQARTLGIPYVEGHQRIITCLTRVFER  482
                   ++V +A  G+ D       WL A Q+ +     ++ V +   I   + R ++ 
Sbjct  435  -VRQFNGEDVPAAISGTTDRQEDQWVWLPAEQGGE-----LATVSSMTLITERMERALQS  488

Query  483  YTAEFIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTIFG  542
              ++FIG+QET+ +++ +E+   EL +E+QR + + + + +LQRL  E +++R +R I  
Sbjct  489  CGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQRLASECVPLRAIRVIAE  548

Query  543  ALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHN---KTWISVLRLGDGVEHLIRDSIRQ  599
            +L+     E+D  +LT+YVRIAL+ ++ +++      + W+    L    E L+RD++RQ
Sbjct  549  TLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADGLQVWL----LTPESEGLLRDGLRQ  604

Query  600  TSSGTYSALEERQSLLILNKIKNAFA--ENQDAVLLTTLDVRRFVRKIIERDLFVLPVLS  657
            T + T+ AL +  S ++++++  AF+    ++AVLL + D+R  +R ++  +++ +PVLS
Sbjct  605  TQTETFFALSNDISQMLVQQLHIAFPLRAPEQAVLLVAQDLRSPLRTLLREEFYHVPVLS  664

Query  658  WQELGDEMNLKVAGTIELIGDELD  681
              E+++  +++V G ++L  D+L+
Sbjct  665  FAEISNAAKVRVMGRFDL-EDDLE  687

59) YPDSF_3705 in NC_009381


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  317 bits (1189),  Expect = 2e-87, Method: Compositional matrix adjust.
 Identities = 275/684 (41%), Positives = 450/684 (66%), Gaps = 34/684 (4%)

Query  5    RQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSll  64
            R ++  A  ++  VFMMI PLPT +VD+LIA+N+ +S +L+M+++ L  PL FS FP++L
Sbjct  18   RSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIMLAMHLPRPLAFSTFPAVL  77

Query  65   littlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfivitK  124
            L+TT++RLAL+ISTTRL+LL++DAG+IVEAFGQFVVGGNLAVG++IF I+TVV+F+VITK
Sbjct  78   LLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVGLVIFLILTVVNFLVITK  137

Query  125  GSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDGAMK  184
            GSERVAEV+ARF+LD+MPGKQMSID+D+RA  I   EA+  R  ++KES+LFGAMDGAMK
Sbjct  138  GSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRSELNKESQLFGAMDGAMK  197

Query  185  FVKGDAiagiiviliniiggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLISIT  244
            FV+GDAIA++I++ IN+IGGI+IGV+QH M+A +A++ Y+VL+IGDGL AQIP+LLIS+T
Sbjct  198  FVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLTIGDGLIAQIPALLISVT  257

Query  245  AGIIVTRVPGSN---KQSLANELAVQVGRQPDALWLAAAI-LTVFALLPGFPFLIFITLa  300
             G+I+TRVP ++     +++ E+A Q+  QP A W+ AA+ +  FA LPG P  +FIT+A
Sbjct  258  CGMIITRVPNTEAGVEANIGREIAEQITSQPKA-WIIAAVAMLGFAALPGMPTGVFITIA  316

Query  301  aavaapaFL-LYRKNRRISQDGRANGGSEEGGATGQRMTPGAVPLMLHCASNLHHP---H  356
               +A + L L R + +  ++G    ++E  G  + R  + +  ++L+  +  + +    
Sbjct  317  IICGAGGMLQLQRAKPKAEEQGAVAVAPEMNGKEDLRTFSPSRQFVLQFHPGQNSALVDA  376

Query  357  LGRDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPPDSLLLTRP  416
            L  +I   R R   ++G+ LP   I     L  + +   VY+  +L   +    + +   
Sbjct  377  LVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFTVYDVPMLKATFTQTHVAVD--  434

Query  417  CSSLVTNNQVLGAKMGSFD-------WLDAKQAMQARTLGIPYVEGHQRIITCLTRVFER  469
                   ++V +A  G+ D       WL A Q+ +     ++ V +   I   + R ++ 
Sbjct  435  -VRQFNGEDVPAAISGTTDRQEDQWVWLPAEQGGE-----LATVSSMTLITERMERALQS  488

Query  470  YTAEFIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTIFG  529
              ++FIG+QET+ +++ +E+   EL +E+QR + + + + +LQRL  E +++R +R I  
Sbjct  489  CGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQRLASECVPLRAIRVIAE  548

Query  530  ALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHN---KTWISVLRLGDGVEHLIRDSIRQ  586
            +L+     E+D  +LT+YVRIAL+ ++ +++      + W+    L    E L+RD++RQ
Sbjct  549  TLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADGLQVWL----LTPESEGLLRDGLRQ  604

Query  587  TSSGTYSALEERQSLLILNKIKNAFA--ENQDAVLLTTLDVRRFVRKIIERDLFVLPVLS  644
            T + T+ AL +  S ++++++  AF+    ++AVLL + D+R  +R ++  +++ +PVLS
Sbjct  605  TQTETFFALSNDISQMLVQQLHIAFPLRAPEQAVLLVAQDLRSPLRTLLREEFYHVPVLS  664

Query  645  WQELGDEMNLKVAGTIELIGDELD  668
              E+++  +++V G ++L  D+L+
Sbjct  665  FAEISNAAKVRVMGRFDL-EDDLE  687

60) YE105_C0332 in NC_015224


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  312 bits (1171),  Expect = 4e-86, Method: Compositional matrix adjust.
 Identities = 281/686 (41%), Positives = 461/686 (68%), Gaps = 41/686 (5%)

Query  16   RQDVFLAVMLLVAIFMMILPLPTVMVDVLIAVNLSFSVILLMISIYLRDPLEFSVFPSll  75
            R +V  A  ++  +FMMI PLPT +VDVLIAVN+ +S +L+M+++ L  PL FS FP++L
Sbjct  18   RSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIMLAMHLPRPLAFSTFPAVL  77

Query  76   littlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGLiiftiitvvqfivitK  135
            L+TT++RLAL+ISTTRL+LL++DAG+IVEAFGQFVVGGNLAVGL+IF I+TVV+F+VITK
Sbjct  78   LLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVGLVIFLILTVVNFLVITK  137

Query  136  GSERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDSAEAGRLRERVQKESRMFGAMDGAMK  195
            GSERVAEV+ARF+LD+MPGKQMSID+D+RA +I   EA   R  ++KES++FGAMDGAMK
Sbjct  138  GSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRSELNKESQLFGAMDGAMK  197

Query  196  FVKGDAiagiivilvniiggitigvLQHNMSAEEAMTTYAVLSVGDGLCAQIPSLLISIT  255
            FV+GDAIA++I++ +N+IGGI+IGV+QH M+A +A+  Y+VL++GDGL AQIP+LLIS+T
Sbjct  198  FVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLTIGDGLIAQIPALLISVT  257

Query  256  AGIIVTRVPDQD---KQSLAKDLAIQVGRQPDALLLAAAILTVfallpgfpflifillaa  312
             G+I+TRVP+ +     ++++++A Q+  QP A ++AA  +  FA LPG P  +FI +A 
Sbjct  258  CGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIAAVAMLGFAALPGMPTGVFITIAI  317

Query  313  lvaTPAFLLYRKKKPSAGASGRGDKLPSPASAMTPGAVPLMLYCAPN---LHYPHLGRD-  368
            + ++ + L  ++ KP A   G     + + ++   G   L  + ++    L++ H G++ 
Sbjct  318  ICGAGGMLQLQRAKPKAEEQG-----AVAVAPEMNGKEDLRTFSPSRQFVLQF-HPGQNS  371

Query  369  --LDGL-------RWRWFEHLGVPLPEVVVRSDPSLAENELSIRVYQEQVLKLTLPFDDV  419
              +D+L       R R   ++G+ LP  ++     L  +E+ + VY+  +LK T+   +V
Sbjct  372  ALVDALVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFTVYDVPMLKATFTQTHV  431

Query  420  LL----LQPSTSLATRSQVLGMKMGSFEWLPAEQAHHASTLGIPYAQGHQCIIHCLTRVL  475
             +    ++     A+ S   + + +   WLPAEQ+ + +T++     +   I + + R L
Sbjct  432  AVDVRQFNGEDVPAAISGTTDRQEDQWVWLPAEQGGELATVS-----SMTLITERMERAL  486

Query  476  ERHTAEFIGVQETRYLMDAMEARYGELVKELQRQMPVGKVAETLQRLVEEDISIRDLRTI  535
            +   ++FIG+QET+ +++ +E+   EL +E+QR + + + +  LQRL  E +++R +R I
Sbjct  487  QSCGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQRLASECVPLRAIRVI  546

Query  536  FGALVAWAPKEKDIVMLTEYVRIALRRHVCSRFSKN---KVWLPVLRLGEGAETLIRESI  592
              +L+     E+D  +LT+YVRIAL+ ++  ++      +VWL    L   +E L+R+++
Sbjct  547  AETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADGLQVWL----LTPESEGLLRDGL  602

Query  593  RQTSAGTYSALENKHSRLLLDKITGAFA--ENTDAVLLTSIDVRRFLRKIVERDIFALPV  650
            RQT + T+ AL N  S++L++++  AF+     +AVLL + D+R  LR ++  +++ +PV
Sbjct  603  RQTQTETFFALSNDISQMLVQQLHIAFPLRAPEQAVLLVAQDLRSPLRTLLREEFYHVPV  662

Query  651  LSWQELGDEMNIKVVGTIELIGDELD  676
            LS  E+++  +++V+G ++L  D+L+
Sbjct  663  LSFAEISNAAKVRVMGRFDL-EDDLE  687

61) Y11_35391 in NC_017564


> NC_004578_P1|49|G39|28868610|NP_791229.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|37007..39094|hrcV|PSPTO_1402|type 
III secretion protein HrcV
Length=695

 Score =  311 bits (1165),  Expect = 1e-85, Method: Compositional matrix adjust.
 Identities = 280/686 (41%), Positives = 461/686 (68%), Gaps = 41/686 (5%)

Query  16   RQDVFLAVMLLVAIFMMILPLPTVMVDVLIAVNLSFSVILLMISIYLRDPLEFSVFPSll  75
            R +V  A  ++  +FMMI PLPT +VDVLIAVN+ +S +L+M+++ L  PL FS FP++L
Sbjct  18   RSEVVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIMLAMHLPRPLAFSTFPAVL  77

Query  76   littlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGLiiftiitvvqfivitK  135
            L+TT++RLAL+ISTTRL+LL++DAG+IVEAFGQFVVGGNLAVGL+IF I+TVV+F+VITK
Sbjct  78   LLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVGLVIFLILTVVNFLVITK  137

Query  136  GSERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDSAEAGRLRERVQKESRMFGAMDGAMK  195
            GSERVAEV+ARF+LD+MPGKQMSID+D+RA +I   EA   R  ++KES++FGAMDGAMK
Sbjct  138  GSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRSELNKESQLFGAMDGAMK  197

Query  196  FVKGDAiagiivilvniiggitigvLQHNMSAEEAMTTYAVLSVGDGLCAQIPSLLISIT  255
            FV+GDAIA++I++ +N+IGGI+IGV+QH M+A +A+  Y+VL++GDGL AQIP+LLIS+T
Sbjct  198  FVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLTIGDGLIAQIPALLISVT  257

Query  256  AGIIVTRVPDQD---KQSLAKDLAIQVGRQPDALLLAAAILTVfallpgfpflifillaa  312
             G+I+TRVP+ +     ++++++A Q+  QP A ++AA  +  FA LPG P  +FI +A 
Sbjct  258  CGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIAAVAMLGFAALPGMPTGVFITIAI  317

Query  313  lvaTPAFLLYRKKKPSAGASGRGDKLPSPASAMTPGAVPLMLYCAPN---LHYPHLGRD-  368
            + ++ + L  ++ KP A   G     + + ++   G   L  + ++    L++ H G++ 
Sbjct  318  ICGAGGMLQLQRAKPKAEEQG-----AVAVAPEMNGKEDLRTFSPSRQFVLQF-HPGQNS  371

Query  369  --LDGL-------RWRWFEHLGVPLPEVVVRSDPSLAENELSIRVYQEQVLKLTLPFDDV  419
              +D+L       R R   ++G+ LP  ++     L  +E+ + VY+  +LK T+   +V
Sbjct  372  ALVDALVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFTVYDVPMLKATFTQTHV  431

Query  420  LL----LQPSTSLATRSQVLGMKMGSFEWLPAEQAHHASTLGIPYAQGHQCIIHCLTRVL  475
             +    ++     A+ S   + + +   WLPAEQ+ + +T++     +   I + + R L
Sbjct  432  AVDVRQFNGEDVPAAISGTTDRQEDQWVWLPAEQGGELATVS-----SMTLITERMERAL  486

Query  476  ERHTAEFIGVQETRYLMDAMEARYGELVKELQRQMPVGKVAETLQRLVEEDISIRDLRTI  535
            +   ++FIG+QET+ +++ +E+   EL +E+QR + + + +  LQRL  E +++R +R I
Sbjct  487  QSCGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQRLASECVPLRAIRVI  546

Query  536  FGALVAWAPKEKDIVMLTEYVRIALRRHVCSRFSKN---KVWLPVLRLGEGAETLIHESI  592
              +L+     E+D  +LT+YVRIAL+ ++  ++      +VWL    L   +E L+++++
Sbjct  547  AETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADGLQVWL----LTPESEGLLRDGL  602

Query  593  RQTSAGTYSALENKHSRLLLDKITGAFA--ENTDAVLLTSIDVRRFLRKIVERDIFALPV  650
            RQT + T+ AL N  S++L++++  AF+     +AVLL + D+R  LR ++  +++ +PV
Sbjct  603  RQTQTETFFALSNDISQMLVQQLHIAFPLRAPEQAVLLVAQDLRSPLRTLLREEFYHVPV  662

Query  651  LSWQELGDEMNIKVVGTIELIGDELD  676
            LS  E+++  +++V+G ++L  D+L+
Sbjct  663  LSFAEISNAAKVRVMGRFDL-EDDLE  687