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Homologs of cupD5 gene of AY273869

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) cupD5
( YP_792964.1 )

pili assembly chaperone

NC_008463
(Pseudomonas aeruginosa UCBPP-PA14)

3e-98

100

2) H681_06060
( YP_007656632.1 )

pili assembly chaperone

NC_020829
(Pseudomonas denitrificans ATCC 13867)

7e-73

3) PSPA7_3019
( YP_001348379.1 )

chaperone CupA5

NC_009656
(Pseudomonas aeruginosa PA7)

7e-60

4) PADK2_15015
( YP_006482984.1 )

chaperone CupA5

NC_018080
(Pseudomonas aeruginosa DK2)

4e-49

5) cupA5
( YP_002440784.1 )

chaperone CupA5

NC_011770
(Pseudomonas aeruginosa LESB58)

4e-49

6) cupA5
( NP_250822.1 )

chaperone CupA5

NC_002516
(Pseudomonas aeruginosa PAO1)

4e-49

7) cupA5
( YP_791114.1 )

chaperone CupA5

NC_008463
(Pseudomonas aeruginosa UCBPP-PA14)

4e-49

8) cupA5
( YP_005981343.1 )

chaperone

NC_017549
(Pseudomonas aeruginosa NCGM2.S1)

5e-48

9) G655_14465
( YP_007709736.1 )

chaperone CupA5

NC_020912
(Pseudomonas aeruginosa B136-33)

6e-48

10) cupA5
( YP_005975494.1 )

chaperone CupA5

NC_017548
(Pseudomonas aeruginosa M18)

6e-48

11) M062_11050
( YP_008132644.1 )

molecular chaperone

NC_021577
(Pseudomonas aeruginosa RP73)

3e-45

12) D781_1429
( YP_007343921.1 )

P pilus assembly protein, chaperone PapD

NC_020064
(Serratia marcescens FGI94)

2e-39

13) YE0157
( YP_001004548.1 )

putative chaperone protein

NC_008800
(Yersinia enterocolitica 8081)

3e-39

14) YPO3881
( YP_002348757.1 )

chaperone protein

NC_003143
(Yersinia pestis CO92)

6e-39

15) YPC_0340
( YP_005622377.1 )

putative chaperone protein

NC_017265
(Yersinia pestis Harbin 35)

6e-39

16) YPTB0156
( YP_068703.1 )

chaperone protein

NC_006155
(Yersinia pseudotuberculosis IP 32953)

6e-39

17) YpAngola_A0499
( YP_001605096.1 )

pili assembly chaperone

NC_010159
(Yersinia pestis Angola)

7e-39

18) YPD8_3426
( YP_005510487.1 )

pili assembly chaperone

NC_017160
(Yersinia pestis D182038)

7e-39

19) YPZ3_3432
( YP_003569603.1 )

pili assembly chaperone

NC_014029
(Yersinia pestis Z176003)

7e-39

20) YpsIP31758_0167
( YP_001399164.1 )

pili assembly chaperone

NC_009708
(Yersinia pseudotuberculosis IP 31758)

7e-39

21) fimC7
( NP_994456.1 )

pilus chaperone

NC_005810
(Yersinia pestis 91001)

2e-38

22) A1122_06400
( YP_005520962.1 )

Pili assembly chaperone, N-terminal

NC_017168
(Yersinia pestis A1122)

2e-38

23) YPA_0138
( YP_650052.1 )

putative chaperone protein

NC_008150
(Yersinia pestis Antiqua)

2e-38

24) papD
( NP_667687.1 )

pilus chaperone

NC_004088
(Yersinia pestis KIM)

2e-38

25) YPN_0083
( YP_646016.1 )

chaperone protein

NC_008149
(Yersinia pestis Nepal516)

2e-38

26) YPDSF_3496
( YP_001164822.1 )

chaperone protein

NC_009381
(Yersinia pestis Pestoides F)

2e-38

27) YPTS_0167
( YP_001870621.1 )

Pili assembly chaperone, N-terminal

NC_010634
(Yersinia pseudotuberculosis PB1/+)

2e-38

28) YPK_4046
( YP_001722761.1 )

pili assembly chaperone

NC_010465
(Yersinia pseudotuberculosis YPIII)

2e-38

29) papD
( YP_583813.1 )

pili assembly chaperone, PapD family

NC_007973
(Cupriavidus metallidurans CH34)

2e-38

30) YE105_C0160
( YP_004296361.1 )

putative chaperone protein

NC_015224
(Yersinia enterocolitica 105.5R(r))

4e-38

31) Y11_33551
( YP_006006854.1 )

putative pilus chaperone, PapD family

NC_017564
(Yersinia enterocolitica Y11)

4e-38

32) YPD4_3424
( YP_005506631.1 )

pili assembly chaperone

NC_017154
(Yersinia pestis D106004)

4e-35

• Sequence Alignments

1) cupD5 in NC_008463


> AY273869|47|G40|32481653|AAP84167.1|Pseudomonas_aeruginosa_PA14|-|40637..41353|cupD5|RL040|putative 
pili assembly chaperone
Length=238

 Score =  350 bits (1313),  Expect = 3e-98, Method: Compositional matrix adjust.
 Identities = 216/216 (100%), Positives = 216/216 (100%), Gaps = 0/216 (0%)

Query  23   RAGVTAERTRAIIAEGHRETSLLLVNQNAYPVIVQTWIDDGAPNSTPQSARAPIMPLPPV  82
            RAGVTAERTRAIIAEGHRETSLLLVNQNAYPVIVQTWIDDGAPNSTPQSARAPIMPLPPV
Sbjct  23   RAGVTAERTRAIIAEGHRETSLLLVNQNAYPVIVQTWIDDGAPNSTPQSARAPIMPLPPV  82

Query  83   FRLEPGQQRSLRLLRTGQALPGDRESLYWLNLYEIPPQATGLLAEGQSRLTVTLRTQMKV  142
            FRLEPGQQRSLRLLRTGQALPGDRESLYWLNLYEIPPQATGLLAEGQSRLTVTLRTQMKV
Sbjct  83   FRLEPGQQRSLRLLRTGQALPGDRESLYWLNLYEIPPQATGLLAEGQSRLTVTLRTQMKV  142

Query  143  IYRPRPLARGAEEAPHQLRFERRGETLQMENPTPYFISLAGAELGGHTRLAAAELLPPFS  202
            IYRPRPLARGAEEAPHQLRFERRGETLQMENPTPYFISLAGAELGGHTRLAAAELLPPFS
Sbjct  143  IYRPRPLARGAEEAPHQLRFERRGETLQMENPTPYFISLAGAELGGHTRLAAAELLPPFS  202

Query  203  RRVLALRQALPGGQAEVRFSWIDDGGNLQQGRSLLH  238
            RRVLALRQALPGGQAEVRFSWIDDGGNLQQGRSLLH
Sbjct  203  RRVLALRQALPGGQAEVRFSWIDDGGNLQQGRSLLH  238

2) H681_06060 in NC_020829


> AY273869|47|G40|32481653|AAP84167.1|Pseudomonas_aeruginosa_PA14|-|40637..41353|cupD5|RL040|putative 
pili assembly chaperone
Length=238

 Score =  266 bits (993),  Expect = 7e-73, Method: Compositional matrix adjust.
 Identities = 160/223 (72%), Positives = 193/223 (87%), Gaps = 2/223 (0%)

Query  19   AGVDAQAGVTAERTRVIFHEGQREASLLLVNQNAYPVIVQTWIDDGDLESAPETAQAPIM  78
            A +DA+AGVTAERTR I+ EG+RE+SLLLVNQNAYPVIVQTWIDDG  +S+P++A+APIM
Sbjct  18   AVLDARAGVTAERTRAIIAEGHRETSLLLVNQNAYPVIVQTWIDDGAPNSTPQSARAPIM  77

Query  79   PLPPVFRLNPEQQRSLRLLHTGEALPQDRESLYWLNLYEIPPQSNEPLAEGQSRLTVTLR  138
            PLPPVFRL+P QQRSLRLL+TG+ALP DRESLYWLNLYEIPPQ+   LAEGQSRLTVTLR
Sbjct  78   PLPPVFRLEPGQQRSLRLLRTGQALPGDRESLYWLNLYEIPPQATGLLAEGQSRLTVTLR  137

Query  139  TQMKVIYRPRALANDAEEAPGQLTFRRLGDAVQVDNPTPYFVTLAGADVRQGNAGTPLPA  198
            TQMKVIYRPR+LA +AEEAP QL F R G+++Q++NPTPYF++LAGA++  G      +A
Sbjct  138  TQMKVIYRPRPLARGAEEAPHQLRFERRGETLQMENPTPYFISLAGAEL--GGHTRLAAA  195

Query  199  ELLPPFSKRTLTPTQALPAGGGEVRYLWIDDGGNSQQGKSALR  241
            ELLPPFS+R L+  QALP+G +EVR+ WIDDGGN QQG+S L+
Sbjct  196  ELLPPFSRRVLALRQALPGGQAEVRFSWIDDGGNLQQGRSLLH  238

3) PSPA7_3019 in NC_009656


> AY273869|47|G40|32481653|AAP84167.1|Pseudomonas_aeruginosa_PA14|-|40637..41353|cupD5|RL040|putative 
pili assembly chaperone
Length=238

 Score =  223 bits (829),  Expect = 7e-60, Method: Compositional matrix adjust.
 Identities = 154/213 (73%), Positives = 190/213 (90%), Gaps = 0/213 (0%)

Query  26   VTAERTRVVIAEGQREASLLLVNQNAYPVIVQAWIDDGDLDSTPQTARAPFMPLPPVFRL  85
            VTAERTR +IAEG+RE+SLLLVNQNAYPVIVQ+WIDDG  +STPQ+ARAP+MPLPPVFRL
Sbjct  26   VTAERTRAIIAEGHRETSLLLVNQNAYPVIVQTWIDDGAPNSTPQSARAPIMPLPPVFRL  85

Query  86   DPGKQRSLRLLRTGQALPGDREALYWLNIYEIPPRPGEPPAEGQSRLTVTLRTQMKVIHr  145
            +PG+QRSLRLLRTGQALPGDRE+LYWLN+YEIPP++    AEGQSRLTVTLRTQMKVI R
Sbjct  86   EPGQQRSLRLLRTGQALPGDRESLYWLNLYEIPPQATGLLAEGQSRLTVTLRTQMKVIYR  145

Query  146  pralaraaeeaprqlrFQRQGKALLVENPTAYFVSLAGAEQEDGapllsalllapFSRQM  205
            PR+LAR+AEEAP+QLRF+R+G +L +ENPT+YF+SLAGAE  + + L +A LL+PFSR++
Sbjct  146  PRPLARGAEEAPHQLRFERRGETLQMENPTPYFISLAGAELGGHTRLAAAELLPPFSRRV  205

Query  206  QAPGQTLPSGKQAIRFHWLDDGGNLRQGRTALR  238
             A  Q+LP+G+  +RF W+DDGGNL+QGR+ L+
Sbjct  206  LALRQALPGGQAEVRFSWIDDGGNLQQGRSLLH  238

4) PADK2_15015 in NC_018080


> AY273869|47|G40|32481653|AAP84167.1|Pseudomonas_aeruginosa_PA14|-|40637..41353|cupD5|RL040|putative 
pili assembly chaperone
Length=238

 Score =  187 bits (693),  Expect = 4e-49, Method: Compositional matrix adjust.
 Identities = 136/218 (63%), Positives = 178/218 (82%), Gaps = 4/218 (1%)

Query  21   AGVTAERTRLVFVEGQREASLLLVNQNPYPVLVQAWVDDGALDGEPDTalapflplppvf  80
            AGVTAERTR ++ EG+RE+SLLLVNQN+YPV+VQ+W+DDGA ++ P++A AP++PLPPVF
Sbjct  24   AGVTAERTRAIIAEGHRETSLLLVNQNAYPVIVQTWIDDGAPNSTPQSARAPIMPLPPVF  83

Query  81   rlEPGRQRSLRLLATGQAQARDRESLYWLNIYEIPPQATA-EAAGRPRLTVTLRTQMKVL  139
            RLEPG+QRSLRLL TGQA + DRESLYWLN+YEIPPQAT+  A G++RLTVTLRTQMKV+
Sbjct  84   RLEPGQQRSLRLLRTGQALPGDRESLYWLNLYEIPPQATGLLAEGQSRLTVTLRTQMKVI  143

Query  140  YRPHGLHPHAEDAAAELGFALRDETLRVDNPTPYFVSLAGLALEIGETRLDLPGTLLAPR  199
            YRP+ L   AE+A+ +L F  R+ETL+++NPTPYF+SLAG  L  G+TRL  ++ LL+P 
Sbjct  144  YRPRPLARGAEEAPHQLRFERRGETLQMENPTPYFISLAGAELG-GHTRLA-AAELLPPF  201

Query  200  SQRRLGLPRRVDGGTRGEVAFDWIDDNGVSRQERKALQ  237
            S+R L+L + + GG ++EV F WIDD G  +Q R  L+
Sbjct  202  SRRVLALRQALPGG-QAEVRFSWIDDGGNLQQGRSLLH  238

5) cupA5 in NC_011770


> AY273869|47|G40|32481653|AAP84167.1|Pseudomonas_aeruginosa_PA14|-|40637..41353|cupD5|RL040|putative 
pili assembly chaperone
Length=238

 Score =  187 bits (693),  Expect = 4e-49, Method: Compositional matrix adjust.
 Identities = 136/218 (63%), Positives = 178/218 (82%), Gaps = 4/218 (1%)

Query  21   AGVTAERTRLVFVEGQREASLLLVNQNPYPVLVQAWVDDGALDGEPDTalapflplppvf  80
            AGVTAERTR ++ EG+RE+SLLLVNQN+YPV+VQ+W+DDGA ++ P++A AP++PLPPVF
Sbjct  24   AGVTAERTRAIIAEGHRETSLLLVNQNAYPVIVQTWIDDGAPNSTPQSARAPIMPLPPVF  83

Query  81   rlEPGRQRSLRLLATGQAQARDRESLYWLNIYEIPPQATA-EAAGRPRLTVTLRTQMKVL  139
            RLEPG+QRSLRLL TGQA + DRESLYWLN+YEIPPQAT+  A G++RLTVTLRTQMKV+
Sbjct  84   RLEPGQQRSLRLLRTGQALPGDRESLYWLNLYEIPPQATGLLAEGQSRLTVTLRTQMKVI  143

Query  140  YRPHGLHPHAEDAAAELGFALRDETLRVDNPTPYFVSLAGLALEIGETRLDLPGTLLAPR  199
            YRP+ L   AE+A+ +L F  R+ETL+++NPTPYF+SLAG  L  G+TRL  ++ LL+P 
Sbjct  144  YRPRPLARGAEEAPHQLRFERRGETLQMENPTPYFISLAGAELG-GHTRLA-AAELLPPF  201

Query  200  SQRRLGLPRRVDGGTRGEVAFDWIDDNGVSRQERKALQ  237
            S+R L+L + + GG ++EV F WIDD G  +Q R  L+
Sbjct  202  SRRVLALRQALPGG-QAEVRFSWIDDGGNLQQGRSLLH  238

6) cupA5 in NC_002516


> AY273869|47|G40|32481653|AAP84167.1|Pseudomonas_aeruginosa_PA14|-|40637..41353|cupD5|RL040|putative 
pili assembly chaperone
Length=238

 Score =  187 bits (693),  Expect = 4e-49, Method: Compositional matrix adjust.
 Identities = 136/218 (63%), Positives = 178/218 (82%), Gaps = 4/218 (1%)

Query  21   AGVTAERTRLVFVEGQREASLLLVNQNPYPVLVQAWVDDGALDGEPDTalapflplppvf  80
            AGVTAERTR ++ EG+RE+SLLLVNQN+YPV+VQ+W+DDGA ++ P++A AP++PLPPVF
Sbjct  24   AGVTAERTRAIIAEGHRETSLLLVNQNAYPVIVQTWIDDGAPNSTPQSARAPIMPLPPVF  83

Query  81   rlEPGRQRSLRLLATGQAQARDRESLYWLNIYEIPPQATA-EAAGRPRLTVTLRTQMKVL  139
            RLEPG+QRSLRLL TGQA + DRESLYWLN+YEIPPQAT+  A G++RLTVTLRTQMKV+
Sbjct  84   RLEPGQQRSLRLLRTGQALPGDRESLYWLNLYEIPPQATGLLAEGQSRLTVTLRTQMKVI  143

Query  140  YRPHGLHPHAEDAAAELGFALRDETLRVDNPTPYFVSLAGLALEIGETRLDLPGTLLAPR  199
            YRP+ L   AE+A+ +L F  R+ETL+++NPTPYF+SLAG  L  G+TRL  ++ LL+P 
Sbjct  144  YRPRPLARGAEEAPHQLRFERRGETLQMENPTPYFISLAGAELG-GHTRLA-AAELLPPF  201

Query  200  SQRRLGLPRRVDGGTRGEVAFDWIDDNGVSRQERKALQ  237
            S+R L+L + + GG ++EV F WIDD G  +Q R  L+
Sbjct  202  SRRVLALRQALPGG-QAEVRFSWIDDGGNLQQGRSLLH  238

7) cupA5 in NC_008463


> AY273869|47|G40|32481653|AAP84167.1|Pseudomonas_aeruginosa_PA14|-|40637..41353|cupD5|RL040|putative 
pili assembly chaperone
Length=238

 Score =  187 bits (693),  Expect = 4e-49, Method: Compositional matrix adjust.
 Identities = 136/218 (63%), Positives = 178/218 (82%), Gaps = 4/218 (1%)

Query  21   AGVTAERTRLVFVEGQREASLLLVNQNPYPVLVQAWVDDGALDGEPDTalapflplppvf  80
            AGVTAERTR ++ EG+RE+SLLLVNQN+YPV+VQ+W+DDGA ++ P++A AP++PLPPVF
Sbjct  24   AGVTAERTRAIIAEGHRETSLLLVNQNAYPVIVQTWIDDGAPNSTPQSARAPIMPLPPVF  83

Query  81   rlEPGRQRSLRLLATGQAQARDRESLYWLNIYEIPPQATA-EAAGRPRLTVTLRTQMKVL  139
            RLEPG+QRSLRLL TGQA + DRESLYWLN+YEIPPQAT+  A G++RLTVTLRTQMKV+
Sbjct  84   RLEPGQQRSLRLLRTGQALPGDRESLYWLNLYEIPPQATGLLAEGQSRLTVTLRTQMKVI  143

Query  140  YRPHGLHPHAEDAAAELGFALRDETLRVDNPTPYFVSLAGLALEIGETRLDLPGTLLAPR  199
            YRP+ L   AE+A+ +L F  R+ETL+++NPTPYF+SLAG  L  G+TRL  ++ LL+P 
Sbjct  144  YRPRPLARGAEEAPHQLRFERRGETLQMENPTPYFISLAGAELG-GHTRLA-AAELLPPF  201

Query  200  SQRRLGLPRRVDGGTRGEVAFDWIDDNGVSRQERKALQ  237
            S+R L+L + + GG ++EV F WIDD G  +Q R  L+
Sbjct  202  SRRVLALRQALPGG-QAEVRFSWIDDGGNLQQGRSLLH  238

8) cupA5 in NC_017549


> AY273869|47|G40|32481653|AAP84167.1|Pseudomonas_aeruginosa_PA14|-|40637..41353|cupD5|RL040|putative 
pili assembly chaperone
Length=238

 Score =  183 bits (678),  Expect = 5e-48, Method: Compositional matrix adjust.
 Identities = 133/216 (62%), Positives = 176/216 (82%), Gaps = 4/216 (1%)

Query  1    MTAERTRLVFVEGQREASLLLVNQNPYPVLVQAWVDDGALDGEPDTalapflplppvfrl  60
            +TAERTR ++ EG+RE+SLLLVNQN+YPV+VQ+W+DDGA ++ P++A AP++PLPPVFRL
Sbjct  26   VTAERTRAIIAEGHRETSLLLVNQNAYPVIVQTWIDDGAPNSTPQSARAPIMPLPPVFRL  85

Query  61   EPGRQRSLRLLATGQAQARDRESLYWLNIYEIPPQATA-EAAGRPRLTVTLRTQMKVLYR  119
            EPG+QRSLRLL TGQA + DRESLYWLN+YEIPPQAT+  A G++RLTVTLRTQMKV+YR
Sbjct  86   EPGQQRSLRLLRTGQALPGDRESLYWLNLYEIPPQATGLLAEGQSRLTVTLRTQMKVIYR  145

Query  120  PHGLHPHAEDAAAELGFALRDETLRVDNPTPYFVSLAGLALEIGETRLDLPGTLLAPRSQ  179
            P+ L   AE+A+ +L F  R+ETL+++NPTPYF+SLAG  L  G+TRL  ++ LL+P S+
Sbjct  146  PRPLARGAEEAPHQLRFERRGETLQMENPTPYFISLAGAELG-GHTRLA-AAELLPPFSR  203

Query  180  RRLGLPRRVDSGTRGEVAFDWIDDNGVSRQERKALQ  215
            R L+L R+  +G ++EV F WIDD G  +Q R  L+
Sbjct  204  RVLAL-RQALPGGQAEVRFSWIDDGGNLQQGRSLLH  238

9) G655_14465 in NC_020912


> AY273869|47|G40|32481653|AAP84167.1|Pseudomonas_aeruginosa_PA14|-|40637..41353|cupD5|RL040|putative 
pili assembly chaperone
Length=238

 Score =  183 bits (677),  Expect = 6e-48, Method: Compositional matrix adjust.
 Identities = 133/216 (62%), Positives = 176/216 (82%), Gaps = 4/216 (1%)

Query  1    MTAERTRLVFVEGQREASLLLVNQNPYPVLVQAWVDDGALDGEPDTalapflplppvfrl  60
            +TAERTR ++ EG+RE+SLLLVNQN+YPV+VQ+W+DDGA ++ P++A AP++PLPPVFRL
Sbjct  26   VTAERTRAIIAEGHRETSLLLVNQNAYPVIVQTWIDDGAPNSTPQSARAPIMPLPPVFRL  85

Query  61   EPGRQRSLRLLATGQAQARDRESLYWLNIYEIPPQATA-EAAGRPRLTVTLRTQMKVLYR  119
            EPG+QRSLRLL TGQA + DRESLYWLN+YEIPPQAT+  A G++RLTVTLRTQMKV+YR
Sbjct  86   EPGQQRSLRLLRTGQALPGDRESLYWLNLYEIPPQATGLLAEGQSRLTVTLRTQMKVIYR  145

Query  120  PHGLHPHAEDAAAELGFALRDETLRVDNPTPYFVSLAGLALEIGETRLDLPGTLLAPRSQ  179
            P+ L   AE+A+ +L F  R+ETL+++NPTPYF+SLAG  L  G+TRL  ++ LL+P S+
Sbjct  146  PRPLARGAEEAPHQLRFERRGETLQMENPTPYFISLAGAELG-GHTRLA-AAELLPPFSR  203

Query  180  RRLGLPRRVDGGTRGEVAFDWIDDNGVSRQERKALQ  215
            R L+L + + GG ++EV F WIDD G  +Q R  L+
Sbjct  204  RVLALRQALPGG-QAEVRFSWIDDGGNLQQGRSLLH  238

10) cupA5 in NC_017548


> AY273869|47|G40|32481653|AAP84167.1|Pseudomonas_aeruginosa_PA14|-|40637..41353|cupD5|RL040|putative 
pili assembly chaperone
Length=238

 Score =  183 bits (677),  Expect = 6e-48, Method: Compositional matrix adjust.
 Identities = 133/216 (62%), Positives = 176/216 (82%), Gaps = 4/216 (1%)

Query  1    MTAERTRLVFVEGQREASLLLVNQNPYPVLVQAWVDDGALDGEPDTalapflplppvfrl  60
            +TAERTR ++ EG+RE+SLLLVNQN+YPV+VQ+W+DDGA ++ P++A AP++PLPPVFRL
Sbjct  26   VTAERTRAIIAEGHRETSLLLVNQNAYPVIVQTWIDDGAPNSTPQSARAPIMPLPPVFRL  85

Query  61   EPGRQRSLRLLATGQAQARDRESLYWLNIYEIPPQATA-EAAGRPRLTVTLRTQMKVLYR  119
            EPG+QRSLRLL TGQA + DRESLYWLN+YEIPPQAT+  A G++RLTVTLRTQMKV+YR
Sbjct  86   EPGQQRSLRLLRTGQALPGDRESLYWLNLYEIPPQATGLLAEGQSRLTVTLRTQMKVIYR  145

Query  120  PHGLHPHAEDAAAELGFALRDETLRVDNPTPYFVSLAGLALEIGETRLELPGTLLAPRSQ  179
            P+ L   AE+A+ +L F  R+ETL+++NPTPYF+SLAG  L  G+TRL  ++ LL+P S+
Sbjct  146  PRPLARGAEEAPHQLRFERRGETLQMENPTPYFISLAGAELG-GHTRLA-AAELLPPFSR  203

Query  180  RRLGLPRRVDGGTRGEVAFDWIDDNGVSRQERKALQ  215
            R L+L + + GG ++EV F WIDD G  +Q R  L+
Sbjct  204  RVLALRQALPGG-QAEVRFSWIDDGGNLQQGRSLLH  238

11) M062_11050 in NC_021577


> AY273869|47|G40|32481653|AAP84167.1|Pseudomonas_aeruginosa_PA14|-|40637..41353|cupD5|RL040|putative 
pili assembly chaperone
Length=238

 Score =  174 bits (644),  Expect = 3e-45, Method: Compositional matrix adjust.
 Identities = 134/218 (62%), Positives = 175/218 (81%), Gaps = 4/218 (1%)

Query  21   AGVTAERTRLVFVEGQREASLLLVNQNPYPVLVQAWVDDGALDGEPDTalapflplppvf  80
            AGVTAERTR ++ EG+RE+SLLLVNQN+YPV+VQ+W+DDGA ++ P++A AP++PLPPVF
Sbjct  24   AGVTAERTRAIIAEGHRETSLLLVNQNAYPVIVQTWIDDGAPNSTPQSARAPIMPLPPVF  83

Query  81   rlEPGRQRSLRLLATGQAQARDRESLYWLNIYEIPPQATA-EAAGRPRLTVTLRTQMKVL  139
            RLEPG+QRSLRLL TGQA + DRESLYWLN+YEIPPQAT+  A G++RLTVTLRTQMKV+
Sbjct  84   RLEPGQQRSLRLLRTGQALPGDRESLYWLNLYEIPPQATGLLAEGQSRLTVTLRTQMKVI  143

Query  140  YRPHGLHPHAEDAAAELGFALRDETLRVDNPTPYFVSLAGLALEIGETRLDLPGTLLAPR  199
            YRP+ L   AE+A+ +L F  R+ETL+++NPTPYF+SLAG  L  G+TRL  ++ LL+P 
Sbjct  144  YRPRPLARGAEEAPHQLRFERRGETLQMENPTPYFISLAGAELG-GHTRLA-AAELLPPF  201

Query  200  SQrrlglprrldggtrgEVAFDWIDDNGVSRQERKALQ  237
            S+ R+   R+   G ++EV F WIDD G  +Q R  L+
Sbjct  202  SR-RVLALRQALPGGQAEVRFSWIDDGGNLQQGRSLLH  238

12) D781_1429 in NC_020064


> AY273869|47|G40|32481653|AAP84167.1|Pseudomonas_aeruginosa_PA14|-|40637..41353|cupD5|RL040|putative 
pili assembly chaperone
Length=238

 Score =  155 bits (572),  Expect = 2e-39, Method: Compositional matrix adjust.
 Identities = 99/225 (44%), Positives = 148/225 (66%), Gaps = 8/225 (3%)

Query  19   DVNAGVIVESSRVVFAGGDRERALLLVNGNDYPVVVQTWVDDGAPDGTPETAGEVPVMPL  78
            D  AGV  E +R ++A G+RE +LLLVN N YPV+VQTW+DDGAP++TP++A   P+MPL
Sbjct  21   DARAGVTAERTRAIIAEGHRETSLLLVNQNAYPVIVQTWIDDGAPNSTPQSA-RAPIMPL  79

Query  79   PGIFRLEPGEKKNLRLLATQVAQPVDRESLYWLNVYEIPP-TDARLPPAVSALKVAVRLQ  137
            P +FRLEPG++++LRLL T  A P DRESLYWLN+YEIPP + + L+ + S L V++R Q
Sbjct  80   PPVFRLEPGQQRSLRLLRTGQALPGDRESLYWLNLYEIPPQATGLLAEGQSRLTVTLRTQ  139

Query  138  LKLFYRPDGLQKRAAQLAASQRFSLTRQPGRLMLTVSNPTPLYATYGQAQLNGGGRQTAL  197
            +K++YRP  L + A + +   RF   R+     L + NPTP + + + A+L G  R +  
Sbjct  140  MKVIYRPRPLARGAEEAPHQLRFE--RRGE--TLQMENPTPYFISLAGAELGGHTRLA--  193

Query  198  AIGMLAPFASKTLDVDERSVGRPESVSYMLIGDDGQGVAGSAALR  242
            A  +L+PF+ + L + +   G    V +  I+D+G+   G + L+
Sbjct  194  AAELLPPFSRRVLALRQALPGGQAEVRFSWIDDGGNLQQGRSLLH  238

13) YE0157 in NC_008800


> AY273869|47|G40|32481653|AAP84167.1|Pseudomonas_aeruginosa_PA14|-|40637..41353|cupD5|RL040|putative 
pili assembly chaperone
Length=238

 Score =  154 bits (568),  Expect = 3e-39, Method: Compositional matrix adjust.
 Identities = 101/219 (47%), Positives = 151/219 (69%), Gaps = 8/219 (3%)

Query  1    MACSVPAMASVVAEKTRIIFSEGSTEESLQLVNSNDYPVAVQVWVDDGDLMATPEKAISP  60
            M   + A A+V AE+TR I++EG  E SL LVN N YPV VQ W+DDG   +TP+ A +P
Sbjct  16   MLAVLDARAGVTAERTRAIIAEGHRETSLLLVNQNAYPVIVQTWIDDGAPNSTPQSARAP  75

Query  61   VLVLPPLFRLQPQAQRSLRLILSGASKLPLDRESAFWLNVYEIPPKATTKV-DDESSVTL  119
            ++ LPP+FRL+P  QRSLRL+ +G + LP DRES +WLN+YEIPP+AT  + +++S +T+
Sbjct  76   IMPLPPVFRLEPGQQRSLRLLRTGQA-LPGDRESLYWLNLYEIPPQATGLLAEGQSRLTV  134

Query  120  ALRMQYKVFYRPKSLPAPADTVSKALTFVLERNGNTASVRVDNPTPYYASLASLTLGLAE  179
            +LR Q KV+YRP++L+  A+  +  L F  ER G+T  ++++NPTPY+ SLA+  LG   
Sbjct  135  TLRTQMKVIYRPRPLARGAEEAPHQLRF--ERRGET--LQMENPTPYFISLAGAELGGHT  190

Query  180  GL--PDMVAPFSKLDFPLNRVPIADSKTVNFVLIDDLGN  216
             L  +++++PFS+  ++L +   ++   V F  IDD GN
Sbjct  191  RLAAAELLPPFSRRVLALRQALPGGQAEVRFSWIDDGGN  229

14) YPC_0340 in NC_017265


> AY273869|47|G40|32481653|AAP84167.1|Pseudomonas_aeruginosa_PA14|-|40637..41353|cupD5|RL040|putative 
pili assembly chaperone
Length=238

 Score =  153 bits (564),  Expect = 6e-39, Method: Compositional matrix adjust.
 Identities = 99/211 (47%), Positives = 149/211 (71%), Gaps = 8/211 (3%)

Query  32   ASVIAERTRIVFSEGSTEESLQLVNSNSYPVAVQVWVDDGNLMATPDKAVSPILVLPPVF  91
            A+V AERTR +++EG  E SL LVN N+YPV VQ W+DDG   +TP+ A +PI+ LPPVF
Sbjct  24   AGVTAERTRAIIAEGHRETSLLLVNQNAYPVIVQTWIDDGAPNSTPQSARAPIMPLPPVF  83

Query  92   RLQPQAQRSLRLILSGGSKLPADRESAFWLNIYEIPPKATP-KSGDESFVTLALRMQYKV  150
            RL+P  QRSLRL L  G  LP+DRES +WLN+YEIPP+AT   + ++S +T++LR Q KV
Sbjct  84   RLEPGQQRSLRL-LRTGQALPGDRESLYWLNLYEIPPQATGLLAEGQSRLTVTLRTQMKV  142

Query  151  FYRPKNLPAPGDILGKALTFSLERNGDSALIKVNNPTPYYASFAALTIGSAE--GPPEMV  208
            +YRP+ L+  ++     L F  ER G++  ++++NPTPY+ S+A+  +G+    +++E++
Sbjct  143  IYRPRPLARGAEEAPHQLRF--ERRGET--LQMENPTPYFISLAGAELGGHTRLAAAELL  198

Query  209  APFSQLDFPLNRAPISDNKTVNFDLIDDLGN  239
            +PFS+  ++L +A  +++  V F  IDD GN
Sbjct  199  PPFSRRVLALRQALPGGQAEVRFSWIDDGGN  229

15) YPO3881 in NC_003143


> AY273869|47|G40|32481653|AAP84167.1|Pseudomonas_aeruginosa_PA14|-|40637..41353|cupD5|RL040|putative 
pili assembly chaperone
Length=238

 Score =  153 bits (564),  Expect = 6e-39, Method: Compositional matrix adjust.
 Identities = 99/211 (47%), Positives = 149/211 (71%), Gaps = 8/211 (3%)

Query  32   ASVIAERTRIVFSEGSTEESLQLVNSNSYPVAVQVWVDDGNLMATPDKAVSPILVLPPVF  91
            A+V AERTR +++EG  E SL LVN N+YPV VQ W+DDG   +TP+ A +PI+ LPPVF
Sbjct  24   AGVTAERTRAIIAEGHRETSLLLVNQNAYPVIVQTWIDDGAPNSTPQSARAPIMPLPPVF  83

Query  92   RLQPQAQRSLRLILSGGSKLPADRESAFWLNIYEIPPKATP-KSGDESFVTLALRMQYKV  150
            RL+P  QRSLRL L  G  LP+DRES +WLN+YEIPP+AT   + ++S +T++LR Q KV
Sbjct  84   RLEPGQQRSLRL-LRTGQALPGDRESLYWLNLYEIPPQATGLLAEGQSRLTVTLRTQMKV  142

Query  151  FYRPKNLPAPGDILGKALTFSLERNGDSALIKVNNPTPYYASFAALTIGSAE--GPPEMV  208
            +YRP+ L+  ++     L F  ER G++  ++++NPTPY+ S+A+  +G+    +++E++
Sbjct  143  IYRPRPLARGAEEAPHQLRF--ERRGET--LQMENPTPYFISLAGAELGGHTRLAAAELL  198

Query  209  APFSQLDFPLNRAPISDNKTVNFDLIDDLGN  239
            +PFS+  ++L +A  +++  V F  IDD GN
Sbjct  199  PPFSRRVLALRQALPGGQAEVRFSWIDDGGN  229

16) YPTB0156 in NC_006155


> AY273869|47|G40|32481653|AAP84167.1|Pseudomonas_aeruginosa_PA14|-|40637..41353|cupD5|RL040|putative 
pili assembly chaperone
Length=238

 Score =  153 bits (564),  Expect = 6e-39, Method: Compositional matrix adjust.
 Identities = 99/211 (47%), Positives = 149/211 (71%), Gaps = 8/211 (3%)

Query  32   ASVIAERTRIVFSEGSTEESLQLVNSNSYPVAVQVWVDDGNLMATPDKAVSPILVLPPVF  91
            A+V AERTR +++EG  E SL LVN N+YPV VQ W+DDG   +TP+ A +PI+ LPPVF
Sbjct  24   AGVTAERTRAIIAEGHRETSLLLVNQNAYPVIVQTWIDDGAPNSTPQSARAPIMPLPPVF  83

Query  92   RLQPQAQRSLRLILSGGSKLPADRESAFWLNIYEIPPKATP-KSGDESFVTLALRMQYKV  150
            RL+P  QRSLRL L  G  LP+DRES +WLN+YEIPP+AT   + ++S +T++LR Q KV
Sbjct  84   RLEPGQQRSLRL-LRTGQALPGDRESLYWLNLYEIPPQATGLLAEGQSRLTVTLRTQMKV  142

Query  151  FYRPKNLPAPGDILGKALTFSLERNGDSALIKVNNPTPYYASFAALTIGSAE--GPPEMV  208
            +YRP+ L+  ++     L F  ER G++  ++++NPTPY+ S+A+  +G+    +++E++
Sbjct  143  IYRPRPLARGAEEAPHQLRF--ERRGET--LQMENPTPYFISLAGAELGGHTRLAAAELL  198

Query  209  APFSQLDFPLNRAPISDNKTVNFDLIDDLGN  239
            +PFS+  ++L +A  +++  V F  IDD GN
Sbjct  199  PPFSRRVLALRQALPGGQAEVRFSWIDDGGN  229

17) YpAngola_A0499 in NC_010159


> AY273869|47|G40|32481653|AAP84167.1|Pseudomonas_aeruginosa_PA14|-|40637..41353|cupD5|RL040|putative 
pili assembly chaperone
Length=238

 Score =  153 bits (564),  Expect = 7e-39, Method: Compositional matrix adjust.
 Identities = 99/211 (47%), Positives = 149/211 (71%), Gaps = 8/211 (3%)

Query  28   ASVIAERTRIVFSEGSTEESLQLVNSNSYPVAVQVWVDDGNLMATPDKAVSPILVLPPVF  87
            A+V AERTR +++EG  E SL LVN N+YPV VQ W+DDG   +TP+ A +PI+ LPPVF
Sbjct  24   AGVTAERTRAIIAEGHRETSLLLVNQNAYPVIVQTWIDDGAPNSTPQSARAPIMPLPPVF  83

Query  88   RLQPQAQRSLRLILSGGSKLPADRESAFWLNIYEIPPKATP-KSGDESFVTLALRMQYKV  146
            RL+P  QRSLRL L  G  LP+DRES +WLN+YEIPP+AT   + ++S +T++LR Q KV
Sbjct  84   RLEPGQQRSLRL-LRTGQALPGDRESLYWLNLYEIPPQATGLLAEGQSRLTVTLRTQMKV  142

Query  147  FYRPKNLPAPGDILGKALTFSLERNGDSALIKVNNPTPYYASFAALTIGSAE--GPPEMV  204
            +YRP+ L+  ++     L F  ER G++  ++++NPTPY+ S+A+  +G+    +++E++
Sbjct  143  IYRPRPLARGAEEAPHQLRF--ERRGET--LQMENPTPYFISLAGAELGGHTRLAAAELL  198

Query  205  APFSQLDFPLNRAPISDNKTVNFDLIDDLGN  235
            +PFS+  ++L +A  +++  V F  IDD GN
Sbjct  199  PPFSRRVLALRQALPGGQAEVRFSWIDDGGN  229

18) YPD8_3426 in NC_017160


> AY273869|47|G40|32481653|AAP84167.1|Pseudomonas_aeruginosa_PA14|-|40637..41353|cupD5|RL040|putative 
pili assembly chaperone
Length=238

 Score =  153 bits (564),  Expect = 7e-39, Method: Compositional matrix adjust.
 Identities = 99/211 (47%), Positives = 149/211 (71%), Gaps = 8/211 (3%)

Query  28   ASVIAERTRIVFSEGSTEESLQLVNSNSYPVAVQVWVDDGNLMATPDKAVSPILVLPPVF  87
            A+V AERTR +++EG  E SL LVN N+YPV VQ W+DDG   +TP+ A +PI+ LPPVF
Sbjct  24   AGVTAERTRAIIAEGHRETSLLLVNQNAYPVIVQTWIDDGAPNSTPQSARAPIMPLPPVF  83

Query  88   RLQPQAQRSLRLILSGGSKLPADRESAFWLNIYEIPPKATP-KSGDESFVTLALRMQYKV  146
            RL+P  QRSLRL L  G  LP+DRES +WLN+YEIPP+AT   + ++S +T++LR Q KV
Sbjct  84   RLEPGQQRSLRL-LRTGQALPGDRESLYWLNLYEIPPQATGLLAEGQSRLTVTLRTQMKV  142

Query  147  FYRPKNLPAPGDILGKALTFSLERNGDSALIKVNNPTPYYASFAALTIGSAE--GPPEMV  204
            +YRP+ L+  ++     L F  ER G++  ++++NPTPY+ S+A+  +G+    +++E++
Sbjct  143  IYRPRPLARGAEEAPHQLRF--ERRGET--LQMENPTPYFISLAGAELGGHTRLAAAELL  198

Query  205  APFSQLDFPLNRAPISDNKTVNFDLIDDLGN  235
            +PFS+  ++L +A  +++  V F  IDD GN
Sbjct  199  PPFSRRVLALRQALPGGQAEVRFSWIDDGGN  229

19) YPZ3_3432 in NC_014029


> AY273869|47|G40|32481653|AAP84167.1|Pseudomonas_aeruginosa_PA14|-|40637..41353|cupD5|RL040|putative 
pili assembly chaperone
Length=238

 Score =  153 bits (564),  Expect = 7e-39, Method: Compositional matrix adjust.
 Identities = 99/211 (47%), Positives = 149/211 (71%), Gaps = 8/211 (3%)

Query  28   ASVIAERTRIVFSEGSTEESLQLVNSNSYPVAVQVWVDDGNLMATPDKAVSPILVLPPVF  87
            A+V AERTR +++EG  E SL LVN N+YPV VQ W+DDG   +TP+ A +PI+ LPPVF
Sbjct  24   AGVTAERTRAIIAEGHRETSLLLVNQNAYPVIVQTWIDDGAPNSTPQSARAPIMPLPPVF  83

Query  88   RLQPQAQRSLRLILSGGSKLPADRESAFWLNIYEIPPKATP-KSGDESFVTLALRMQYKV  146
            RL+P  QRSLRL L  G  LP+DRES +WLN+YEIPP+AT   + ++S +T++LR Q KV
Sbjct  84   RLEPGQQRSLRL-LRTGQALPGDRESLYWLNLYEIPPQATGLLAEGQSRLTVTLRTQMKV  142

Query  147  FYRPKNLPAPGDILGKALTFSLERNGDSALIKVNNPTPYYASFAALTIGSAE--GPPEMV  204
            +YRP+ L+  ++     L F  ER G++  ++++NPTPY+ S+A+  +G+    +++E++
Sbjct  143  IYRPRPLARGAEEAPHQLRF--ERRGET--LQMENPTPYFISLAGAELGGHTRLAAAELL  198

Query  205  APFSQLDFPLNRAPISDNKTVNFDLIDDLGN  235
            +PFS+  ++L +A  +++  V F  IDD GN
Sbjct  199  PPFSRRVLALRQALPGGQAEVRFSWIDDGGN  229

20) YpsIP31758_0167 in NC_009708


> AY273869|47|G40|32481653|AAP84167.1|Pseudomonas_aeruginosa_PA14|-|40637..41353|cupD5|RL040|putative 
pili assembly chaperone
Length=238

 Score =  153 bits (564),  Expect = 7e-39, Method: Compositional matrix adjust.
 Identities = 99/211 (47%), Positives = 149/211 (71%), Gaps = 8/211 (3%)

Query  28   ASVIAERTRIVFSEGSTEESLQLVNSNSYPVAVQVWVDDGNLMATPDKAVSPILVLPPVF  87
            A+V AERTR +++EG  E SL LVN N+YPV VQ W+DDG   +TP+ A +PI+ LPPVF
Sbjct  24   AGVTAERTRAIIAEGHRETSLLLVNQNAYPVIVQTWIDDGAPNSTPQSARAPIMPLPPVF  83

Query  88   RLQPQAQRSLRLILSGGSKLPADRESAFWLNIYEIPPKATP-KSGDESFVTLALRMQYKV  146
            RL+P  QRSLRL L  G  LP+DRES +WLN+YEIPP+AT   + ++S +T++LR Q KV
Sbjct  84   RLEPGQQRSLRL-LRTGQALPGDRESLYWLNLYEIPPQATGLLAEGQSRLTVTLRTQMKV  142

Query  147  FYRPKNLPAPGDILGKALTFSLERNGDSALIKVNNPTPYYASFAALTIGSAE--GPPEMV  204
            +YRP+ L+  ++     L F  ER G++  ++++NPTPY+ S+A+  +G+    +++E++
Sbjct  143  IYRPRPLARGAEEAPHQLRF--ERRGET--LQMENPTPYFISLAGAELGGHTRLAAAELL  198

Query  205  APFSQLDFPLNRAPISDNKTVNFDLIDDLGN  235
            +PFS+  ++L +A  +++  V F  IDD GN
Sbjct  199  PPFSRRVLALRQALPGGQAEVRFSWIDDGGN  229

21) A1122_06400 in NC_017168


> AY273869|47|G40|32481653|AAP84167.1|Pseudomonas_aeruginosa_PA14|-|40637..41353|cupD5|RL040|putative 
pili assembly chaperone
Length=238

 Score =  152 bits (560),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 99/211 (47%), Positives = 149/211 (71%), Gaps = 8/211 (3%)

Query  56   ASVIAERTRIVFSEGSTEESLQLVNSNSYPVAVQVWVDDGNLMATPDKAVSPILVLPPVF  115
            A+V AERTR +++EG  E SL LVN N+YPV VQ W+DDG   +TP+ A +PI+ LPPVF
Sbjct  24   AGVTAERTRAIIAEGHRETSLLLVNQNAYPVIVQTWIDDGAPNSTPQSARAPIMPLPPVF  83

Query  116  RLQPQAQRSLRLILSGGSKLPADRESAFWLNIYEIPPKATP-KSGDESFVTLALRMQYKV  174
            RL+P  QRSLRL L  G  LP+DRES +WLN+YEIPP+AT   + ++S +T++LR Q KV
Sbjct  84   RLEPGQQRSLRL-LRTGQALPGDRESLYWLNLYEIPPQATGLLAEGQSRLTVTLRTQMKV  142

Query  175  FYRPKNLPAPGDILGKALTFSLERNGDSALIKVNNPTPYYASFAALTIGSAE--GPPEMV  232
            +YRP+ L+  ++     L F  ER G++  ++++NPTPY+ S+A+  +G+    +++E++
Sbjct  143  IYRPRPLARGAEEAPHQLRF--ERRGET--LQMENPTPYFISLAGAELGGHTRLAAAELL  198

Query  233  APFSQLDFPLNRAPISDNKTVNFDLIDDLGN  263
            +PFS+  ++L +A  +++  V F  IDD GN
Sbjct  199  PPFSRRVLALRQALPGGQAEVRFSWIDDGGN  229

22) YPA_0138 in NC_008150


> AY273869|47|G40|32481653|AAP84167.1|Pseudomonas_aeruginosa_PA14|-|40637..41353|cupD5|RL040|putative 
pili assembly chaperone
Length=238

 Score =  152 bits (560),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 99/211 (47%), Positives = 149/211 (71%), Gaps = 8/211 (3%)

Query  56   ASVIAERTRIVFSEGSTEESLQLVNSNSYPVAVQVWVDDGNLMATPDKAVSPILVLPPVF  115
            A+V AERTR +++EG  E SL LVN N+YPV VQ W+DDG   +TP+ A +PI+ LPPVF
Sbjct  24   AGVTAERTRAIIAEGHRETSLLLVNQNAYPVIVQTWIDDGAPNSTPQSARAPIMPLPPVF  83

Query  116  RLQPQAQRSLRLILSGGSKLPADRESAFWLNIYEIPPKATP-KSGDESFVTLALRMQYKV  174
            RL+P  QRSLRL L  G  LP+DRES +WLN+YEIPP+AT   + ++S +T++LR Q KV
Sbjct  84   RLEPGQQRSLRL-LRTGQALPGDRESLYWLNLYEIPPQATGLLAEGQSRLTVTLRTQMKV  142

Query  175  FYRPKNLPAPGDILGKALTFSLERNGDSALIKVNNPTPYYASFAALTIGSAE--GPPEMV  232
            +YRP+ L+  ++     L F  ER G++  ++++NPTPY+ S+A+  +G+    +++E++
Sbjct  143  IYRPRPLARGAEEAPHQLRF--ERRGET--LQMENPTPYFISLAGAELGGHTRLAAAELL  198

Query  233  APFSQLDFPLNRAPISDNKTVNFDLIDDLGN  263
            +PFS+  ++L +A  +++  V F  IDD GN
Sbjct  199  PPFSRRVLALRQALPGGQAEVRFSWIDDGGN  229

23) fimC7 in NC_005810


> AY273869|47|G40|32481653|AAP84167.1|Pseudomonas_aeruginosa_PA14|-|40637..41353|cupD5|RL040|putative 
pili assembly chaperone
Length=238

 Score =  152 bits (560),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 99/211 (47%), Positives = 149/211 (71%), Gaps = 8/211 (3%)

Query  56   ASVIAERTRIVFSEGSTEESLQLVNSNSYPVAVQVWVDDGNLMATPDKAVSPILVLPPVF  115
            A+V AERTR +++EG  E SL LVN N+YPV VQ W+DDG   +TP+ A +PI+ LPPVF
Sbjct  24   AGVTAERTRAIIAEGHRETSLLLVNQNAYPVIVQTWIDDGAPNSTPQSARAPIMPLPPVF  83

Query  116  RLQPQAQRSLRLILSGGSKLPADRESAFWLNIYEIPPKATP-KSGDESFVTLALRMQYKV  174
            RL+P  QRSLRL L  G  LP+DRES +WLN+YEIPP+AT   + ++S +T++LR Q KV
Sbjct  84   RLEPGQQRSLRL-LRTGQALPGDRESLYWLNLYEIPPQATGLLAEGQSRLTVTLRTQMKV  142

Query  175  FYRPKNLPAPGDILGKALTFSLERNGDSALIKVNNPTPYYASFAALTIGSAE--GPPEMV  232
            +YRP+ L+  ++     L F  ER G++  ++++NPTPY+ S+A+  +G+    +++E++
Sbjct  143  IYRPRPLARGAEEAPHQLRF--ERRGET--LQMENPTPYFISLAGAELGGHTRLAAAELL  198

Query  233  APFSQLDFPLNRAPISDNKTVNFDLIDDLGN  263
            +PFS+  ++L +A  +++  V F  IDD GN
Sbjct  199  PPFSRRVLALRQALPGGQAEVRFSWIDDGGN  229

24) papD in NC_004088


> AY273869|47|G40|32481653|AAP84167.1|Pseudomonas_aeruginosa_PA14|-|40637..41353|cupD5|RL040|putative 
pili assembly chaperone
Length=238

 Score =  152 bits (560),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 99/211 (47%), Positives = 149/211 (71%), Gaps = 8/211 (3%)

Query  56   ASVIAERTRIVFSEGSTEESLQLVNSNSYPVAVQVWVDDGNLMATPDKAVSPILVLPPVF  115
            A+V AERTR +++EG  E SL LVN N+YPV VQ W+DDG   +TP+ A +PI+ LPPVF
Sbjct  24   AGVTAERTRAIIAEGHRETSLLLVNQNAYPVIVQTWIDDGAPNSTPQSARAPIMPLPPVF  83

Query  116  RLQPQAQRSLRLILSGGSKLPADRESAFWLNIYEIPPKATP-KSGDESFVTLALRMQYKV  174
            RL+P  QRSLRL L  G  LP+DRES +WLN+YEIPP+AT   + ++S +T++LR Q KV
Sbjct  84   RLEPGQQRSLRL-LRTGQALPGDRESLYWLNLYEIPPQATGLLAEGQSRLTVTLRTQMKV  142

Query  175  FYRPKNLPAPGDILGKALTFSLERNGDSALIKVNNPTPYYASFAALTIGSAE--GPPEMV  232
            +YRP+ L+  ++     L F  ER G++  ++++NPTPY+ S+A+  +G+    +++E++
Sbjct  143  IYRPRPLARGAEEAPHQLRF--ERRGET--LQMENPTPYFISLAGAELGGHTRLAAAELL  198

Query  233  APFSQLDFPLNRAPISDNKTVNFDLIDDLGN  263
            +PFS+  ++L +A  +++  V F  IDD GN
Sbjct  199  PPFSRRVLALRQALPGGQAEVRFSWIDDGGN  229

25) YPN_0083 in NC_008149


> AY273869|47|G40|32481653|AAP84167.1|Pseudomonas_aeruginosa_PA14|-|40637..41353|cupD5|RL040|putative 
pili assembly chaperone
Length=238

 Score =  152 bits (560),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 99/211 (47%), Positives = 149/211 (71%), Gaps = 8/211 (3%)

Query  56   ASVIAERTRIVFSEGSTEESLQLVNSNSYPVAVQVWVDDGNLMATPDKAVSPILVLPPVF  115
            A+V AERTR +++EG  E SL LVN N+YPV VQ W+DDG   +TP+ A +PI+ LPPVF
Sbjct  24   AGVTAERTRAIIAEGHRETSLLLVNQNAYPVIVQTWIDDGAPNSTPQSARAPIMPLPPVF  83

Query  116  RLQPQAQRSLRLILSGGSKLPADRESAFWLNIYEIPPKATP-KSGDESFVTLALRMQYKV  174
            RL+P  QRSLRL L  G  LP+DRES +WLN+YEIPP+AT   + ++S +T++LR Q KV
Sbjct  84   RLEPGQQRSLRL-LRTGQALPGDRESLYWLNLYEIPPQATGLLAEGQSRLTVTLRTQMKV  142

Query  175  FYRPKNLPAPGDILGKALTFSLERNGDSALIKVNNPTPYYASFAALTIGSAE--GPPEMV  232
            +YRP+ L+  ++     L F  ER G++  ++++NPTPY+ S+A+  +G+    +++E++
Sbjct  143  IYRPRPLARGAEEAPHQLRF--ERRGET--LQMENPTPYFISLAGAELGGHTRLAAAELL  198

Query  233  APFSQLDFPLNRAPISDNKTVNFDLIDDLGN  263
            +PFS+  ++L +A  +++  V F  IDD GN
Sbjct  199  PPFSRRVLALRQALPGGQAEVRFSWIDDGGN  229

26) YPDSF_3496 in NC_009381


> AY273869|47|G40|32481653|AAP84167.1|Pseudomonas_aeruginosa_PA14|-|40637..41353|cupD5|RL040|putative 
pili assembly chaperone
Length=238

 Score =  152 bits (560),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 99/211 (47%), Positives = 149/211 (71%), Gaps = 8/211 (3%)

Query  56   ASVIAERTRIVFSEGSTEESLQLVNSNSYPVAVQVWVDDGNLMATPDKAVSPILVLPPVF  115
            A+V AERTR +++EG  E SL LVN N+YPV VQ W+DDG   +TP+ A +PI+ LPPVF
Sbjct  24   AGVTAERTRAIIAEGHRETSLLLVNQNAYPVIVQTWIDDGAPNSTPQSARAPIMPLPPVF  83

Query  116  RLQPQAQRSLRLILSGGSKLPADRESAFWLNIYEIPPKATP-KSGDESFVTLALRMQYKV  174
            RL+P  QRSLRL L  G  LP+DRES +WLN+YEIPP+AT   + ++S +T++LR Q KV
Sbjct  84   RLEPGQQRSLRL-LRTGQALPGDRESLYWLNLYEIPPQATGLLAEGQSRLTVTLRTQMKV  142

Query  175  FYRPKNLPAPGDILGKALTFSLERNGDSALIKVNNPTPYYASFAALTIGSAE--GPPEMV  232
            +YRP+ L+  ++     L F  ER G++  ++++NPTPY+ S+A+  +G+    +++E++
Sbjct  143  IYRPRPLARGAEEAPHQLRF--ERRGET--LQMENPTPYFISLAGAELGGHTRLAAAELL  198

Query  233  APFSQLDFPLNRAPISDNKTVNFDLIDDLGN  263
            +PFS+  ++L +A  +++  V F  IDD GN
Sbjct  199  PPFSRRVLALRQALPGGQAEVRFSWIDDGGN  229

27) YPTS_0167 in NC_010634


> AY273869|47|G40|32481653|AAP84167.1|Pseudomonas_aeruginosa_PA14|-|40637..41353|cupD5|RL040|putative 
pili assembly chaperone
Length=238

 Score =  152 bits (560),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 99/211 (47%), Positives = 149/211 (71%), Gaps = 8/211 (3%)

Query  56   ASVIAERTRIVFSEGSTEESLQLVNSNSYPVAVQVWVDDGNLMATPDKAVSPILVLPPVF  115
            A+V AERTR +++EG  E SL LVN N+YPV VQ W+DDG   +TP+ A +PI+ LPPVF
Sbjct  24   AGVTAERTRAIIAEGHRETSLLLVNQNAYPVIVQTWIDDGAPNSTPQSARAPIMPLPPVF  83

Query  116  RLQPQAQRSLRLILSGGSKLPADRESAFWLNIYEIPPKATP-KSGDESFVTLALRMQYKV  174
            RL+P  QRSLRL L  G  LP+DRES +WLN+YEIPP+AT   + ++S +T++LR Q KV
Sbjct  84   RLEPGQQRSLRL-LRTGQALPGDRESLYWLNLYEIPPQATGLLAEGQSRLTVTLRTQMKV  142

Query  175  FYRPKNLPAPGDILGKALTFSLERNGDSALIKVNNPTPYYASFAALTIGSAE--GPPEMV  232
            +YRP+ L+  ++     L F  ER G++  ++++NPTPY+ S+A+  +G+    +++E++
Sbjct  143  IYRPRPLARGAEEAPHQLRF--ERRGET--LQMENPTPYFISLAGAELGGHTRLAAAELL  198

Query  233  APFSQLDFPLNRAPISDNKTVNFDLIDDLGN  263
            +PFS+  ++L +A  +++  V F  IDD GN
Sbjct  199  PPFSRRVLALRQALPGGQAEVRFSWIDDGGN  229

28) YPK_4046 in NC_010465


> AY273869|47|G40|32481653|AAP84167.1|Pseudomonas_aeruginosa_PA14|-|40637..41353|cupD5|RL040|putative 
pili assembly chaperone
Length=238

 Score =  152 bits (560),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 99/211 (47%), Positives = 149/211 (71%), Gaps = 8/211 (3%)

Query  56   ASVIAERTRIVFSEGSTEESLQLVNSNSYPVAVQVWVDDGNLMATPDKAVSPILVLPPVF  115
            A+V AERTR +++EG  E SL LVN N+YPV VQ W+DDG   +TP+ A +PI+ LPPVF
Sbjct  24   AGVTAERTRAIIAEGHRETSLLLVNQNAYPVIVQTWIDDGAPNSTPQSARAPIMPLPPVF  83

Query  116  RLQPQAQRSLRLILSGGSKLPADRESAFWLNIYEIPPKATP-KSGDESFVTLALRMQYKV  174
            RL+P  QRSLRL L  G  LP+DRES +WLN+YEIPP+AT   + ++S +T++LR Q KV
Sbjct  84   RLEPGQQRSLRL-LRTGQALPGDRESLYWLNLYEIPPQATGLLAEGQSRLTVTLRTQMKV  142

Query  175  FYRPKNLPAPGDILGKALTFSLERNGDSALIKVNNPTPYYASFAALTIGSAE--GPPEMV  232
            +YRP+ L+  ++     L F  ER G++  ++++NPTPY+ S+A+  +G+    +++E++
Sbjct  143  IYRPRPLARGAEEAPHQLRF--ERRGET--LQMENPTPYFISLAGAELGGHTRLAAAELL  198

Query  233  APFSQLDFPLNRAPISDNKTVNFDLIDDLGN  263
            +PFS+  ++L +A  +++  V F  IDD GN
Sbjct  199  PPFSRRVLALRQALPGGQAEVRFSWIDDGGN  229

29) papD in NC_007973


> AY273869|47|G40|32481653|AAP84167.1|Pseudomonas_aeruginosa_PA14|-|40637..41353|cupD5|RL040|putative 
pili assembly chaperone
Length=238

 Score =  151 bits (558),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 96/216 (45%), Positives = 154/216 (72%), Gaps = 8/216 (3%)

Query  49   QAIAGVTPEVSRVVYAADAAEQSLQVFNVNDYPVLAQAWIDDGRIDALPQESTAPIVVIP  108
            +A AGVT+E +R + A +  E SL + N N YPV+ Q+WIDDG  ++ PQ + API+ +P
Sbjct  21   DARAGVTAERTRAIIAEGHRETSLLLVNQNAYPVIVQTWIDDGAPNSTPQSARAPIMPLP  80

Query  109  PIFRLGRGDQTSLRLINSGAALPSDRESLFWLNIYEIPSTPNGSMAESQL-VTVTMRTQI  167
            P+FRL  G+Q SLRL+ +G ALP+DRESL+WLN+YEIP+ + G +AE+Q  +TVT+RTQ+
Sbjct  81   PVFRLEPGQQRSLRLLRTGQALPGDRESLYWLNLYEIPPQATGLLAEGQSRLTVTLRTQM  140

Query  168  KVFVRPRKLPFSSDEIPKRLAFSVKIMTDESLLEIRNPTPYYVTFSKIQTDIGRISQVSS  227
            KV+ RPR L+ +++E P +L F  +  T    L++ NPTPY+++++   +++G  +++++
Sbjct  141  KVIYRPRPLARGAEEAPHQLRFERRGET----LQMENPTPYFISLA--GAELGGHTRLAA  194

Query  228  VEMIAPYSQTIAHLGEVKGIGNSARIRFSLIDDDGN  263
             E+++P+S+ +  L +    G  A +RFS IDD+GN
Sbjct  195  AELLPPFSRRVLALRQALP-GGQAEVRFSWIDDGGN  229

30) YE105_C0160 in NC_015224


> AY273869|47|G40|32481653|AAP84167.1|Pseudomonas_aeruginosa_PA14|-|40637..41353|cupD5|RL040|putative 
pili assembly chaperone
Length=238

 Score =  150 bits (554),  Expect = 4e-38, Method: Compositional matrix adjust.
 Identities = 98/209 (47%), Positives = 145/209 (70%), Gaps = 8/209 (3%)

Query  36   VVAEKTRIIFSEGSTEESLQLVNSNNYPVAVQVWVDDGDLMATPEKAVSPVLVLPPLFRL  95
            V AE+TR I++EG  E SL LVN N YPV VQ W+DDG   +TP+ A +P++ LPP+FRL
Sbjct  26   VTAERTRAIIAEGHRETSLLLVNQNAYPVIVQTWIDDGAPNSTPQSARAPIMPLPPVFRL  85

Query  96   QPQAQRSLRLILSGASKLPLDRESAFWLNVYEIPPKATTKV-DDESSVTLALRMQYKVFY  154
            +P  QRSLRL+ +G + LP DRES +WLN+YEIPP+AT  + +++S +T++LR Q KV+Y
Sbjct  86   EPGQQRSLRLLRTGQA-LPGDRESLYWLNLYEIPPQATGLLAEGQSRLTVTLRTQMKVIY  144

Query  155  RPKNLPAPADTVSKALTFALERNGNTASVRVDNPTPYYASLASLTLGLAEGL--PDMVAP  212
            RP+ L+  A+  +  L F  ER G+T  ++++NPTPY+ SLA+  LG    L  +++++P
Sbjct  145  RPRPLARGAEEAPHQLRF--ERRGET--LQMENPTPYFISLAGAELGGHTRLAAAELLPP  200

Query  213  FSKLDFPLNRVPTADSKTVNFVLIDDLGN  241
            FS+  ++L +   ++   V F  IDD GN
Sbjct  201  FSRRVLALRQALPGGQAEVRFSWIDDGGN  229

31) Y11_33551 in NC_017564


> AY273869|47|G40|32481653|AAP84167.1|Pseudomonas_aeruginosa_PA14|-|40637..41353|cupD5|RL040|putative 
pili assembly chaperone
Length=238

 Score =  150 bits (554),  Expect = 4e-38, Method: Compositional matrix adjust.
 Identities = 97/209 (47%), Positives = 145/209 (70%), Gaps = 8/209 (3%)

Query  38   IVAEKTRIIFSEGSTEESLQLVNSNNYPVAVQVWVDDGDLMATPEKAVSPVLVLPPLFRL  97
            + AE+TR I++EG  E SL LVN N YPV VQ W+DDG   +TP+ A +P++ LPP+FRL
Sbjct  26   VTAERTRAIIAEGHRETSLLLVNQNAYPVIVQTWIDDGAPNSTPQSARAPIMPLPPVFRL  85

Query  98   QPQAQRSLRLILSGASKLPLDRESAFWLNVYEIPPKATTKV-DDESSVTLALRMQYKVFY  156
            +P  QRSLRL+ +G + LP DRES +WLN+YEIPP+AT  + +++S +T++LR Q KV+Y
Sbjct  86   EPGQQRSLRLLRTGQA-LPGDRESLYWLNLYEIPPQATGLLAEGQSRLTVTLRTQMKVIY  144

Query  157  RPKNLPAPADTVSKALTFALERNGNTASVRVDNPTPYYASLASLTLGLAEGL--PDMVAP  214
            RP+ L+  A+  +  L F  ER G+T  ++++NPTPY+ SLA+  LG    L  +++++P
Sbjct  145  RPRPLARGAEEAPHQLRF--ERRGET--LQMENPTPYFISLAGAELGGHTRLAAAELLPP  200

Query  215  FSKLDFPLNRVPTADSKTVNFVLIDDLGN  243
            FS+  ++L +   ++   V F  IDD GN
Sbjct  201  FSRRVLALRQALPGGQAEVRFSWIDDGGN  229

32) YPD4_3424 in NC_017154


> AY273869|47|G40|32481653|AAP84167.1|Pseudomonas_aeruginosa_PA14|-|40637..41353|cupD5|RL040|putative 
pili assembly chaperone
Length=238

 Score =  140 bits (515),  Expect = 4e-35, Method: Compositional matrix adjust.
 Identities = 92/199 (47%), Positives = 138/199 (70%), Gaps = 8/199 (4%)

Query  4    VEGSTEESLQLVNSNSYPVAVQVWVDDGNLMATPDKAVSPILVLPPVFRLQPQAQRSLRL  63
             EG  E SL LVN N+YPV VQ W+DDG   +TP+ A +PI+ LPPVFRL+P  QRSLRL
Sbjct  36   AEGHRETSLLLVNQNAYPVIVQTWIDDGAPNSTPQSARAPIMPLPPVFRLEPGQQRSLRL  95

Query  64   ILSGGSKLPADRESAFWLNIYEIPPKATP-KSGDESFVTLALRMQYKVFYRPKNLPAPGD  122
             L  G  LP+DRES +WLN+YEIPP+AT   + ++S +T++LR Q KV+YRP+ L+  ++
Sbjct  96   -LRTGQALPGDRESLYWLNLYEIPPQATGLLAEGQSRLTVTLRTQMKVIYRPRPLARGAE  154

Query  123  ILGKALTFSLERNGDSALIKVNNPTPYYASFAALTIGSAE--GPPEMVAPFSQLDFPLNR  180
                 L F  ER G++  ++++NPTPY+ S+A+  +G+    +++E+++PFS+  ++L +
Sbjct  155  EAPHQLRF--ERRGET--LQMENPTPYFISLAGAELGGHTRLAAAELLPPFSRRVLALRQ  210

Query  181  APISDNKTVNFDLIDDLGN  199
            A  +++  V F  IDD GN
Sbjct  211  ALPGGQAEVRFSWIDDGGN  229