Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of EFAU085_00728 gene of NC_021994_R1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) EFAU004_02782
( YP_005355980.1 )

Helix-turn-helix domain protein

NC_017022
(Enterococcus faecium Aus0004)

3e-53

100

2) EFAU085_00728
( YP_008394252.1 )

Helix-turn-helix domain protein

NC_021994
(Enterococcus faecium AUS0085)

3e-53

100

3) FPR_01210
( YP_007798975.1 )

Helix-turn-helix.

NC_021020
(Faecalibacterium prausnitzii SL3/3)

8e-41

4) RHOM_15575
( YP_004840153.1 )

hypothetical protein

NC_015977
(Roseburia hominis A2-183)

5e-38

5) RO1_33150
( YP_007779401.1 )

Helix-turn-helix.

NC_021012
(Roseburia intestinalis XB6B4)

5e-38

6) FPR_00750
( YP_007798935.1 )

Helix-turn-helix.

NC_021020
(Faecalibacterium prausnitzii SL3/3)

6e-38

7) RBR_20670
( YP_007781972.1 )

Helix-turn-helix.

NC_021013
(Ruminococcus bromii L2-63)

9e-38

8) RTO_11770
( YP_007786348.1 )

Helix-turn-helix.

NC_021015
([Ruminococcus] torques L2-14)

9e-38

9) CDR20291_1747
( YP_003218239.1 )

hypothetical protein

NC_013316
(Clostridium difficile R20291)

1e-37

10) RHOM_10525
( YP_004839148.1 )

hypothetical protein

NC_015977
(Roseburia hominis A2-183)

1e-37

11) FP2_19120
( YP_007837613.1 )

Helix-turn-helix.

NC_021042
(Faecalibacterium prausnitzii L2/6)

2e-32

12) FP2_14180
( YP_007837201.1 )

Helix-turn-helix.

NC_021042
(Faecalibacterium prausnitzii L2/6)

2e-25

• Sequence Alignments

1) EFAU004_02782 in NC_017022


> NC_021994_R1|46|G46|529233440|YP_008394252.1|Enterococcus_faecium_Aus0085|-|44411..44782|-|EFAU085_00728|Helix-turn-helix 
domain protein
Length=123

 Score =  201 bits (747),  Expect = 3e-53, Method: Compositional matrix adjust.
 Identities = 123/123 (100%), Positives = 123/123 (100%), Gaps = 0/123 (0%)

Query  1    MANIEDCPGFETFGADVKAARQAKRVSRKAMAEKINIDWRYLANIENDGAIPSLPVVIQL  60
            MANIEDCPGFETFGADVKAARQAKRVSRKAMAEKINIDWRYLANIENDGAIPSLPVVIQL
Sbjct  1    MANIEDCPGFETFGADVKAARQAKRVSRKAMAEKINIDWRYLANIENDGAIPSLPVVIQL  60

Query  61   IKACGLPVERYFNPEIMREESELRQRVSHKLKLCPEEYLPIIEGAIDSAILIEKPKKNET  120
            IKACGLPVERYFNPEIMREESELRQRVSHKLKLCPEEYLPIIEGAIDSAILIEKPKKNET
Sbjct  61   IKACGLPVERYFNPEIMREESELRQRVSHKLKLCPEEYLPIIEGAIDSAILIEKPKKNET  120

Query  121  EDV  123
            EDV
Sbjct  121  EDV  123

2) EFAU085_00728 in NC_021994


> NC_021994_R1|46|G46|529233440|YP_008394252.1|Enterococcus_faecium_Aus0085|-|44411..44782|-|EFAU085_00728|Helix-turn-helix 
domain protein
Length=123

 Score =  201 bits (747),  Expect = 3e-53, Method: Compositional matrix adjust.
 Identities = 123/123 (100%), Positives = 123/123 (100%), Gaps = 0/123 (0%)

Query  1    MANIEDCPGFETFGADVKAARQAKRVSRKAMAEKINIDWRYLANIENDGAIPSLPVVIQL  60
            MANIEDCPGFETFGADVKAARQAKRVSRKAMAEKINIDWRYLANIENDGAIPSLPVVIQL
Sbjct  1    MANIEDCPGFETFGADVKAARQAKRVSRKAMAEKINIDWRYLANIENDGAIPSLPVVIQL  60

Query  61   IKACGLPVERYFNPEIMREESELRQRVSHKLKLCPEEYLPIIEGAIDSAILIEKPKKNET  120
            IKACGLPVERYFNPEIMREESELRQRVSHKLKLCPEEYLPIIEGAIDSAILIEKPKKNET
Sbjct  61   IKACGLPVERYFNPEIMREESELRQRVSHKLKLCPEEYLPIIEGAIDSAILIEKPKKNET  120

Query  121  EDV  123
            EDV
Sbjct  121  EDV  123

3) FPR_01210 in NC_021020


> NC_021994_R1|46|G46|529233440|YP_008394252.1|Enterococcus_faecium_Aus0085|-|44411..44782|-|EFAU085_00728|Helix-turn-helix 
domain protein
Length=123

 Score =  160 bits (589),  Expect = 8e-41, Method: Compositional matrix adjust.
 Identities = 90/120 (75%), Positives = 108/120 (90%), Gaps = 0/120 (0%)

Query  1    MAKIEDCPGFETFGADVKAARKAKQLSRSALADMIHCDSRYLANIENEGTLPSLPVVIQL  60
            MA+IEDCPGFETFGADVKAAR+AK++SR A+A+ I+ D RYLANIEN+G++PSLPVVIQL
Sbjct  1    MANIEDCPGFETFGADVKAARQAKRVSRKAMAEKINIDWRYLANIENDGAIPSLPVVIQL  60

Query  61   IKICGLPVERYFNPELMREESAERQRVSHKLQLCPEEYLPIVEGAIDGALRIHEQEKDPA  120
            IK CGLPVERYFNPE+MREES  RQRVSHKL+LCPEEYLPI+EGAID+A+ I+   K+ +
Sbjct  61   IKACGLPVERYFNPEIMREESELRQRVSHKLKLCPEEYLPIIEGAIDSAILIEKPKKNET  120

4) RHOM_15575 in NC_015977


> NC_021994_R1|46|G46|529233440|YP_008394252.1|Enterococcus_faecium_Aus0085|-|44411..44782|-|EFAU085_00728|Helix-turn-helix 
domain protein
Length=123

 Score =  150 bits (554),  Expect = 5e-38, Method: Compositional matrix adjust.
 Identities = 95/122 (78%), Positives = 112/122 (92%), Gaps = 0/122 (0%)

Query  1    MAKVEDCPGFETFGADVkaareakrlarktlaEMVGIEWRYLANIENQGAIPSLPVMIQL  60
            MA++EDCPGFETFGADVKAAR+AKR++RK++AE + I+WRYLANIEN+GAIPSLPV+IQL
Sbjct  1    MANIEDCPGFETFGADVKAARQAKRVSRKAMAEKINIDWRYLANIENDGAIPSLPVVIQL  60

Query  61   IKVCGLPVERYFNPEIMREESEQRQRVSHKLKLCPEEYLPIIEGAIDGALKMEQTAKQKE  120
            IK CGLPVERYFNPEIMREESE RQRVSHKLKLCPEEYLPIIEGAID+A+ +E+  K+  
Sbjct  61   IKACGLPVERYFNPEIMREESELRQRVSHKLKLCPEEYLPIIEGAIDSAILIEKPKKNET  120

Query  121  DA  122
            + 
Sbjct  121  ED  122

5) RO1_33150 in NC_021012


> NC_021994_R1|46|G46|529233440|YP_008394252.1|Enterococcus_faecium_Aus0085|-|44411..44782|-|EFAU085_00728|Helix-turn-helix 
domain protein
Length=123

 Score =  150 bits (554),  Expect = 5e-38, Method: Compositional matrix adjust.
 Identities = 95/122 (78%), Positives = 112/122 (92%), Gaps = 0/122 (0%)

Query  1    MAKVEDCPGFETFGADVkaareakrlarktlaEMVGIEWRYLANIENQGAIPSLPVMIQL  60
            MA++EDCPGFETFGADVKAAR+AKR++RK++AE + I+WRYLANIEN+GAIPSLPV+IQL
Sbjct  1    MANIEDCPGFETFGADVKAARQAKRVSRKAMAEKINIDWRYLANIENDGAIPSLPVVIQL  60

Query  61   IKVCGLPVERYFNPEIMREESEQRQRVSHKLKLCPEEYLPIIEGAIDGALKMEQTAKQKE  120
            IK CGLPVERYFNPEIMREESE RQRVSHKLKLCPEEYLPIIEGAID+A+ +E+  K+  
Sbjct  61   IKACGLPVERYFNPEIMREESELRQRVSHKLKLCPEEYLPIIEGAIDSAILIEKPKKNET  120

Query  121  DA  122
            + 
Sbjct  121  ED  122

6) FPR_00750 in NC_021020


> NC_021994_R1|46|G46|529233440|YP_008394252.1|Enterococcus_faecium_Aus0085|-|44411..44782|-|EFAU085_00728|Helix-turn-helix 
domain protein
Length=123

 Score =  150 bits (553),  Expect = 6e-38, Method: Compositional matrix adjust.
 Identities = 94/122 (78%), Positives = 112/122 (92%), Gaps = 0/122 (0%)

Query  1    MAKVEDCPGFETFGADVkaareakrlarktlaEMVGIEWRYLANIENQGAIPSLPVMIQL  60
            MA++EDCPGFETFGADVKAAR+AKR++RK++AE + I+WRYLANIEN+GAIPSLPV+IQL
Sbjct  1    MANIEDCPGFETFGADVKAARQAKRVSRKAMAEKINIDWRYLANIENDGAIPSLPVVIQL  60

Query  61   IKVCGLPVERYFNPEIMREESEQRQRVSHKLKLCPEQYLPIIEGAIDGALKMEQTAKQKE  120
            IK CGLPVERYFNPEIMREESE RQRVSHKLKLCPE+YLPIIEGAID+A+ +E+  K+  
Sbjct  61   IKACGLPVERYFNPEIMREESELRQRVSHKLKLCPEEYLPIIEGAIDSAILIEKPKKNET  120

Query  121  DA  122
            + 
Sbjct  121  ED  122

7) RBR_20670 in NC_021013


> NC_021994_R1|46|G46|529233440|YP_008394252.1|Enterococcus_faecium_Aus0085|-|44411..44782|-|EFAU085_00728|Helix-turn-helix 
domain protein
Length=123

 Score =  150 bits (551),  Expect = 9e-38, Method: Compositional matrix adjust.
 Identities = 94/122 (78%), Positives = 111/122 (91%), Gaps = 0/122 (0%)

Query  1    MAKVEDCPGFETFGADVkaareakrlarktlaEMVGIEWRYLANIENQGAIPSLPVMIQL  60
            MA++EDCPGFETFGADVKAAR+AKR++RK++AE + I+WRYLANIEN+GAIPSLPV+IQL
Sbjct  1    MANIEDCPGFETFGADVKAARQAKRVSRKAMAEKINIDWRYLANIENDGAIPSLPVVIQL  60

Query  61   IKVCGLPVERYFNPAIMREESEQRQRVSHKLKLCPEEYLPIIEGAIDGALKMEQTAKQKE  120
            IK CGLPVERYFNP IMREESE RQRVSHKLKLCPEEYLPIIEGAID+A+ +E+  K+  
Sbjct  61   IKACGLPVERYFNPEIMREESELRQRVSHKLKLCPEEYLPIIEGAIDSAILIEKPKKNET  120

Query  121  DA  122
            + 
Sbjct  121  ED  122

8) RTO_11770 in NC_021015


> NC_021994_R1|46|G46|529233440|YP_008394252.1|Enterococcus_faecium_Aus0085|-|44411..44782|-|EFAU085_00728|Helix-turn-helix 
domain protein
Length=123

 Score =  150 bits (551),  Expect = 9e-38, Method: Compositional matrix adjust.
 Identities = 94/122 (78%), Positives = 111/122 (91%), Gaps = 0/122 (0%)

Query  1    MAKVEDCPGFETFGADVkaareakrlarktlaEMVGIEWRYLANIENQGAIPSLPVMIQL  60
            MA++EDCPGFETFGADVKAAR+AKR++RK++AE + I+WRYLANIEN+GAIPSLPV+IQL
Sbjct  1    MANIEDCPGFETFGADVKAARQAKRVSRKAMAEKINIDWRYLANIENDGAIPSLPVVIQL  60

Query  61   IKVCGLPVERYFNPAIMREESEQRQRVSHKLKLCPEEYLPIIEGAIDGALKMEQTAKQKE  120
            IK CGLPVERYFNP IMREESE RQRVSHKLKLCPEEYLPIIEGAID+A+ +E+  K+  
Sbjct  61   IKACGLPVERYFNPEIMREESELRQRVSHKLKLCPEEYLPIIEGAIDSAILIEKPKKNET  120

Query  121  DA  122
            + 
Sbjct  121  ED  122

9) CDR20291_1747 in NC_013316


> NC_021994_R1|46|G46|529233440|YP_008394252.1|Enterococcus_faecium_Aus0085|-|44411..44782|-|EFAU085_00728|Helix-turn-helix 
domain protein
Length=123

 Score =  149 bits (548),  Expect = 1e-37, Method: Compositional matrix adjust.
 Identities = 94/122 (78%), Positives = 112/122 (92%), Gaps = 0/122 (0%)

Query  1    MAKVEDCPGFETFGADVkaarearrlarktlaeMVGIEWRYLANIENQGAIPSLPVMIQL  60
            MA++EDCPGFETFGADVKAAR+A+R++RK++AE + I+WRYLANIEN+GAIPSLPV+IQL
Sbjct  1    MANIEDCPGFETFGADVKAARQAKRVSRKAMAEKINIDWRYLANIENDGAIPSLPVVIQL  60

Query  61   IKVCGLPVERYFNPEIMREESEQRQRVSHKLKLCPEEYLPIIEGAIDGALKMEQTAKQKE  120
            IK CGLPVERYFNPEIMREESE RQRVSHKLKLCPEEYLPIIEGAID+A+ +E+  K+  
Sbjct  61   IKACGLPVERYFNPEIMREESELRQRVSHKLKLCPEEYLPIIEGAIDSAILIEKPKKNET  120

Query  121  DA  122
            + 
Sbjct  121  ED  122

10) RHOM_10525 in NC_015977


> NC_021994_R1|46|G46|529233440|YP_008394252.1|Enterococcus_faecium_Aus0085|-|44411..44782|-|EFAU085_00728|Helix-turn-helix 
domain protein
Length=123

 Score =  149 bits (550),  Expect = 1e-37, Method: Compositional matrix adjust.
 Identities = 93/122 (77%), Positives = 111/122 (91%), Gaps = 0/122 (0%)

Query  1    MAKVEDCPGFETFGADVkaareakrlarktlaEMVGIEWRYLANIENQGAIPSLPVMIQL  60
            MA++EDCPGFETFGADVKAAR+AKR++RK++AE + I+WRYLANIEN+GAIPSLPV+IQL
Sbjct  1    MANIEDCPGFETFGADVKAARQAKRVSRKAMAEKINIDWRYLANIENDGAIPSLPVVIQL  60

Query  61   IKVCGLPVERYFNPEIMREESAQRQRVSHKLKLCPEQYLPIIEGAIDGALKMEQTAKQKE  120
            IK CGLPVERYFNPEIMREES  RQRVSHKLKLCPE+YLPIIEGAID+A+ +E+  K+  
Sbjct  61   IKACGLPVERYFNPEIMREESELRQRVSHKLKLCPEEYLPIIEGAIDSAILIEKPKKNET  120

Query  121  DA  122
            + 
Sbjct  121  ED  122

11) FP2_19120 in NC_021042


> NC_021994_R1|46|G46|529233440|YP_008394252.1|Enterococcus_faecium_Aus0085|-|44411..44782|-|EFAU085_00728|Helix-turn-helix 
domain protein
Length=123

 Score =  132 bits (483),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 75/113 (67%), Positives = 94/113 (84%), Gaps = 0/113 (0%)

Query  1    MAKVEDCPGFETFGKDVQMAREAVGLSRRELAEQINIDPRYLANIELEETIPSMPVVIQL  60
            MA++EDCPGFETFG DV+ AR+A  +SR+ +AE+INID RYLANIE + +IPS+PVVIQL
Sbjct  1    MANIEDCPGFETFGADVKAARQAKRVSRKAMAEKINIDWRYLANIENDGAIPSLPVVIQL  60

Query  61   IKICKLPFARYFNPETIGKMSDERQRVSHKLQLCPEKYLPIVEATIDGAIKLE  113
            IK C LP  RYFNPE +   S+ RQRVSHKL+LCPE YLPI+E++ID+AI +E
Sbjct  61   IKACGLPVERYFNPEIMREESELRQRVSHKLKLCPEEYLPIIEGAIDSAILIE  113

12) FP2_14180 in NC_021042


> NC_021994_R1|46|G46|529233440|YP_008394252.1|Enterococcus_faecium_Aus0085|-|44411..44782|-|EFAU085_00728|Helix-turn-helix 
domain protein
Length=123

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 63/98 (65%), Positives = 80/98 (82%), Gaps = 1/98 (1%)

Query  1    MSRRELAENVGIDPRYLANIELCGTIPSVPVVMQLIRICKLPAERYFNPELLREDSEQRQ  60
            +SR+ +AE++ ID RYLANIE  G+IPS+PVV+QLI+ C LP ERYFNPE++RE+SE RQ
Sbjct  26   VSRKAMAEKINIDWRYLANIENDGAIPSLPVVIQLIKACGLPVERYFNPEIMREESELRQ  85

Query  61   RTSHKLQLCPEKYLPIVEGVIDGAIKL-KVADDEKEDV  97
            R SHKL+LCPE YLPI+EG ID+AI + K   +E EDV
Sbjct  86   RVSHKLKLCPEEYLPIIEGAIDSAILIEKPKKNETEDV  123