>NC_014256_P1|46|G46|298736236|YP_003728762.1|Helicobacter_pylori_B8|+|46180..49734|cagA|HPB8_741|cytotoxin-associated
Length = 3555
Score = 2525 bits (6516), Expect = 0.0
Identities = 1403/1567 (90%)
Strand = Plus / Plus
Query: 1034 tacaagttcaaccagttaccgattcacaataacgctctgtcttctatgctaatggggagt 1093
|||||||||||||| ||| | ||||||||||||||||||||||| || |||||||||||
Sbjct: 871 tacaagttcaaccaattattggttcacaataacgctctgtcttctgtgttaatggggagt 930
Query: 1094 catagcagcatagaacctgaaaaagtttcattgttgtatggggataatggtggtcctgaa 1153
||| ||||||||||||||||||||||||| |||||||| | |||||||| ||||||
Sbjct: 931 catgatggcatagaacctgaaaaagtttcattattgtatggaaacaatggtggccctgaa 990
Query: 1154 gctaggcatgattggaacgccaccgttggttataaaaaccaacaaggcaacaatgtggcc 1213
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 991 gctaggcatgattggaacgccaccgttggtcataaaaaccaacaaggcaacaatgtggct 1050
Query: 1214 acactcatcaatgcgcatcttaaaaacggcagcgggttagtcatagcgggtaatggaaat 1273
|||||||| |||| |||| | ||||||||||| |||||||||||||| ||| || ||
Sbjct: 1051 acactcattaatgtgcatatgaaaaacggcagtgggttagtcatagcaggtggtgagaaa 1110
Query: 1274 gggattaacaaccctagcttctatctctacaaaacagaccaactcacaggcttggaacaa 1333
||| ||||||||||||| || |||||||||||| ||| || |||||||||||| |||||
Sbjct: 1111 ggggttaacaaccctagtttttatctctacaaagaagatcagctcacaggcttgaaacaa 1170
Query: 1334 gcgttgagtcaagaagagatccaaaacaaagtggatttcatggaacttcttgcacaaaac 1393
|| ||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 1171 gcattgagtcaaaaagagatccaaaacaaagtagatttcatggaatttcttgcacaaaat 1230
Query: 1394 aacgctagattagataacttgagcgaggaagagaaagaaaagttccaaactgagattgga 1453
|| |||| |||||| ||||||||| || ||||||||||||| ||||||| |||||||| |
Sbjct: 1231 aatgctaaattagacaacttgagcaagaaagagaaagaaaaattccaaaatgagattgaa 1290
Query: 1454 aatttccaaaaagaccctaaggcttatttagactccctagggaatgatcgcattgctttt 1513
|||| |||||||||| |||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 1291 gattttcaaaaagaccataaggcttatttagacgccctagggaatgatcacattgctttt 1350
Query: 1514 gtttctaaaaaagaccaaaagcatttagctttggttactgagtttggtaatggggaattg 1573
||||||||||||||| |||| ||||||||||| |||||||||||||||| |||||| |||
Sbjct: 1351 gtttctaaaaaagacaaaaaacatttagctttagttactgagtttggtagtggggacttg 1410
Query: 1574 agctatactctcaaagattatgggaaaaaacaagatagagctttagatagggagacaaaa 1633
||||| |||||||||||||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct: 1411 agctacactctcaaagattatgggaaaaaagcagataaagctttagatagggagataaaa 1470
Query: 1634 accactcttcaaggtaacctaaagcatgatggcgtgatgtttgtcaattattccaatttc 1693
|||||||||||||||| |||||| |||||||||||||||||||| ||||||| ||||||
Sbjct: 1471 accactcttcaaggtagcctaaaacatgatggcgtgatgtttgttgattattctaatttc 1530
Query: 1694 aaatacaccaacgcctccaagagtcctgatgagggtataggcgctacgaatggcgtttcc 1753
|||||||||||||||||||||||||||||| ||||| | || ||||||||||||||||||
Sbjct: 1531 aaatacaccaacgcctccaagagtcctgataagggtgtgggtgctacgaatggcgtttcc 1590
Query: 1754 catttggaagcaaattttagcaaggtggctgtctttaatttgcctgatttaaatggtctc 1813
||||||||||||||| |||||||||| |||||||||||||||||| |||||||| ||||
Sbjct: 1591 catttggaagcaaatcttagcaaggtagctgtctttaatttgcctaatttaaataatctc 1650
Query: 1814 gctatctctagttttgcaaggcggaatttagaggataaactgatcgctaaaggattgccc 1873
|||||| |||||| | |||||| | ||||| || |||||| |||||||||||| ||
Sbjct: 1651 gctatcactagttatataaggcgagacttagaagagaaactgggggctaaaggattgtcc 1710
Query: 1874 ccaaaagacgctaataagatcatcaaagactttttgaacagcaacaaggaattgcttgaa 1933
||| |||| ||||||||| ||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 1711 ccacaagaagctaataagctcatcaaagactttttgaacagcaacaaggaattggttgga 1770
Query: 1934 aaagctttagacttcaataaagctgtagctgaagctaaaaatacaggcaattatgacgga 1993
|||| |||| || |||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 1771 aaagttttaaacctcaataaagctgtagctgaagctaaaaacacaggcaattatgacgaa 1830
Query: 1994 gtgaaaaaagctca-aaaagatcttgaaaaatctataaggaaacgagagcgtttagagca 2052
|||||||||||||| |||| |||||||||||||| ||||||||||||||| ||||||| |
Sbjct: 1831 gtgaaaaaagctcagaaaa-atcttgaaaaatctctaaggaaacgagagcatttagagaa 1889
Query: 2053 agaaataacgaaaaaatttgagaacaagagcggcaacaaaaataaaatggaagcgaaagt 2112
|||| || ||||||||| ||||||| | || ||||||||||| ||||||||| ||||
Sbjct: 1890 agaagtagtgaaaaaattggagaacagaaacgacaacaaaaatagaatggaagcaaaagc 1949
Query: 2113 tcaagctaacagccaaaaagatgggatttttaagcttatcaatgaagaggctcataagga 2172
|||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||
Sbjct: 1950 tcaagctaacagccaaaaagataagatttttgcaattatcaatgaagaggctagtaagga 2009
Query: 2173 agcaagaatcgccgcttacgctcagaatcttaaaggcatcaggagggaattgtttgataa 2232
||||||| | ||||||| || |||||| |||||||||||| | |||||||| ||||||
Sbjct: 2010 agcaagagtggccgcttgcgttcagaagtttaaaggcatcaaaatggaattgtctgataa 2069
Query: 2233 agttaaaaatctcaacaagaatttgaaagactttgataaatcttttgatgcgctcaaaag 2292
|| |||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2070 gtttgaaaacatcaacaagaatttgaaagactttgataaatcttttgatgacttcaaaaa 2129
Query: 2293 tggcaaaaataaggatttcagcaaggcagaagaaacgctaaaagcccttgaaagctcggt 2352
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 2130 tggcaaaaataaggatttcagcaaggcagaagaaacgctaaaagcccttaaaggctcggt 2189
Query: 2353 gaaagatttgggtatcaatccagaatggatttcaaaagttgaaaaccttaatgcagcttt 2412
||| ||||| || ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2190 gaaggatttaggcatcaatccagaatggatttcaaaagttgaaaaccttaatacagcttt 2249
Query: 2413 gaatgaattcaaaaatggcaaaaataaggatttcagcaaggtaacacaagcaaaaagcga 2472
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2250 gaatgacttcaaaaatggcaaaaataaggatttcagcaaggtaacgcaagcaaaaagcga 2309
Query: 2473 ccttgaaaattccattaaggatgtgctcatcaatcaagagataacggataaagttgacaa 2532
|||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 2310 ccttgaaaattccattaaagatgtgatcatcaatcaaaagataacggataaagttgacaa 2369
Query: 2533 tctcaatcaggctgtattaagggctaaagcgataggcgattttagtggggtagagcaaga 2592
||||||||| || |||| | ||||||||| | ||||||||| ||||||||||||||||
Sbjct: 2370 tctcaatcaagcggtatcagtggctaaagcaacaggcgatttcagtggggtagagcaagc 2429
Query: 2593 gctagcc 2599
|||||||
Sbjct: 2430 gctagcc 2436
Score = 870 bits (2246), Expect = e-253
Identities = 474/518 (92%)
Strand = Plus / Plus
Query: 56 cggcttttaatccacaacaatttatcaataatcttcaagtggcttttattaaacttgata 115
|||||||||| || || |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 41 cggcttttaacccgcagcaatttatcaataatcttcaagtggcttttattaaagttgata 100
Query: 116 gtgctgtcgcttcatttgatcccgatcaaaaaccaatcgttgataagaacgatagggata 175
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 101 acgctgtcgcttcatttgatcctgatcaaaaaccaatcgttgataagaatgatagggata 160
Query: 176 acaggcaagcttttaatgtaatctcgcaattaagggaagaatacgccaataaagcgatca 235
|||||||||||||| | ||||||||| ||||||| ||| ||| |||||||||||||
Sbjct: 161 acaggcaagcttttgagaaaatctcgcagctaagggagaaattcgctaataaagcgatca 220
Query: 236 aaaatcccaccaaaaagaatcagtatttttcagactttatcgataaaagcaatgatttga 295
||||||| |||||||||||||||||||||||| |||||||| ||| |||| |||||| |
Sbjct: 221 aaaatcctaccaaaaagaatcagtatttttcaaactttatcagtaagagcagtgatttaa 280
Query: 296 tcaacaaaaacgatctcattgatacagattcttccacaaagagctttgaaaaatttgggg 355
|||||||| ||| |||||||||||||| |||||||| ||| |||||| | |||||||||
Sbjct: 281 tcaacaaagacggtctcattgatacaggttcttccataaaaagctttcagaaatttggga 340
Query: 356 ctcagcgttaccaaatttttatgaattgggtgtcccatcaaaaagatccgtctaaaatca 415
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 341 ctcagcgttaccaaatttttatgaattgggtgtcccatcaaaaagatccatctcaaatca 400
Query: 416 acacccaaaaaatccgagattttatggaaaatatcatacaaccccctatctctgatgata 475
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 acacccaaaaaatccgaggttttatggaaaatatcatacaaccccctatctctgatgata 460
Query: 476 aagaaaaagcggagtttttgaggtctgccaaacaatcttttgcaggaattatcataggga 535
|||| |||||||||||||||||||||||||||||| || ||||||||||||||||| | |
Sbjct: 461 aagagaaagcggagtttttgaggtctgccaaacaagctcttgcaggaattatcataagaa 520
Query: 536 accaaacccgatcggatgaaaaattcatgggcgttttt 573
|||||| |||||||||| |||||||||||||||| |||
Sbjct: 521 accaaatccgatcggatcaaaaattcatgggcgtgttt 558
Score = 618 bits (1594), Expect = e-177
Identities = 347/391 (89%)
Strand = Plus / Plus
Query: 3016 agcgaaattggacaattacgctactaacagccacacacgcattaatagcaatgtcaaaaa 3075
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3165 agcgaaattggacaattatgctattaacagccacacacgcattaatagcaatgtcaaaaa 3224
Query: 3076 tggaacaatcaatgaaaaagcgatcggcatgctaacgcaaaaaaaccctgagtggctcaa 3135
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 3225 tggaacaatcaatgaaaaagtgaccggcatgctaacgcaaaaaaaccctgagtggctcaa 3284
Query: 3136 gcttgtgaatgataagatagttgcgcataatgtgggaagcgctcctttgtcaggttatga 3195
||| |||||||||||||||||||| |||||||||||||||| ||||||||||| |||||
Sbjct: 3285 gctcgtgaatgataagatagttgcacataatgtgggaagcgttcctttgtcagagtatga 3344
Query: 3196 taaaattggattcaaccaaaagaatatgaaaggttattctgattcgttcaggttttccac 3255
||||||||| |||||||| || |||||||||| |||||||||||| |||| |||||||||
Sbjct: 3345 taaaattggcttcaaccagaaaaatatgaaagattattctgattcattcaagttttccac 3404
Query: 3256 caagttgagcaatgccgtaaaaaacattaagtctgactttaagcaacttttaaccgattg 3315
|| |||||||||||| |||||| |||||||||||| |||| |||| |||||||| ||
Sbjct: 3405 caggttgagcaatgctgtaaaagacattaagtctggctttgtgcaatttttaaccaatac 3464
Query: 3316 catttctgcaggaacttacagcccgaagaaagc------ggaacatggagttaaaaatat 3369
||||| ||| |||||||| || |||||| |||||||||||| |||||||
Sbjct: 3465 attttctatgggatcttacagcttgatgaaagcaagtgtggaacatggagtcaaaaatac 3524
Query: 3370 taatacaaaaagtggtttccagaaatcttaa 3400
|||||||||| |||||||||| |||||||||
Sbjct: 3525 taatacaaaaggtggtttccaaaaatcttaa 3555
Score = 373 bits (963), Expect = e-103
Identities = 211/241 (88%)
Strand = Plus / Plus
Query: 2766 atctcggcggatcttcccctttgaaaaggtatgctaaagttgatgatctcagtaaggtag 2825
||||||||||| ||| ||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 2924 atctcggcggacctttccctttgaaaaggcatgataaagttgatgatctcagtaaggtag 2983
Query: 2826 ggctttcaagggagcaagaattgaatgagaaaattggcaatctcaatcaggcagtgtcag 2885
||||||||||| | ||||||||| | ||||||||| ||||||||||||||| || ||||
Sbjct: 2984 ggctttcaaggaatcaagaattggctcagaaaattgacaatctcaatcaggcggtatcag 3043
Query: 2886 aagctaaagcaggttcttttggcaacctagaacaaatgatggatggactcaaagattcta 2945
||||||||||| || ||||| ||||||||| |||||||| || |||||||||||||
Sbjct: 3044 aagctaaagcatgtcattttgacaacctagatcaaatgatagacaagctcaaagattcta 3103
Query: 2946 caaaaaagaatgttgtgaatctatggtttgaaggtgcaagaaaagtgcctattagtttgc 3005
|||||||||||||| ||||||||| ||||| |||||| ||||||||||| |||||||
Sbjct: 3104 caaaaaagaatgttatgaatctatatgttgaaagtgcaaaaaaagtgcctactagtttgt 3163
Query: 3006 c 3006
|
Sbjct: 3164 c 3164
Score = 347 bits (896), Expect = 9e-96
Identities = 196/221 (89%)
Strand = Plus / Plus
Query: 813 ctgttggggattggcttgatatttttttatcgtttgtatttaacaaagaacaatcttctg 872
||| |||||||||| |||||||||||||||| ||||| ||||||||| |||||||||| |
Sbjct: 620 ctggtggggattggtttgatatttttttatcatttgtgtttaacaaaaaacaatcttccg 679
Query: 873 atctcaaagaaacgctcaatcaagagccaaggcctcatgttgaacaaaatgtagcctcta 932
||||||||||||||||||||||||| ||| |||||||| ||| | |||||||| |||
Sbjct: 680 atctcaaagaaacgctcaatcaagaaccagttcctcatgtccaaccagatgtagccacta 739
Query: 933 cccccacccacatacaaggcttaccgcctgaagctagggatttgcttgatgaaaggggtg 992
|| |||| |||||||| |||||||||||||| |||| ||||| |||||||||||||||
Sbjct: 740 ccaccactgacatacaaagcttaccgcctgaatctagagatttacttgatgaaaggggta 799
Query: 993 atttttctaaattcactcttggtgatatggaaatgttggat 1033
|||||||||||||||||||||| |||||||||||||| |||
Sbjct: 800 atttttctaaattcactcttggcgatatggaaatgttagat 840
Score = 131 bits (338), Expect = 1e-30
Identities = 70/75 (93%)
Strand = Plus / Plus
Query: 2691 ctttgaaaaggtatgctaaagttgatgatctcagtaaggtagggcaatcagatagccctg 2750
|||||||| || || |||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 2840 ctttgaaagggcatactaaagttgatgatctcagtaaggtagggcgatcagttagccctg 2899
Query: 2751 aacccatttacgcta 2765
|||||||||||||||
Sbjct: 2900 aacccatttacgcta 2914
Score = 80 bits (207), Expect = 2e-15
Identities = 44/46 (96%)
Strand = Plus / Plus
Query: 767 gatgaatctttgaaagagaggcaagaagcacaaaacaatggagagc 812
|||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 559 gatgaatctttgaaagagaggcaagaagcagaaaaaaatggagagc 604
Score = 37 bits (94), Expect = 3e-02
Identities = 20/22 (91%)
Strand = Plus / Plus
Query: 2635 tcaaaaaaatgaaagtttcaat 2656
||||||||||||| |||||||
Sbjct: 2478 tcaaaaaaatgaagatttcaat 2499
Score = 30 bits (78), Expect = 2e+00
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 1 atggctaacgaaaccat 17
||| |||||||||||||
Sbjct: 1 atgactaacgaaaccat 17
Score = 15 bits (40), Expect = 7e+04
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 2603 ctcaaaag 2610
||||||||
Sbjct: 2451 ctcaaaag 2458 |