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Homologs of pilR gene of NC_009708_P1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) pilR
( YP_001402684.1 )

type IV pilus biogenesis protein PilR

NC_009708
(Yersinia pseudotuberculosis IP 31758)

2e-139

100

2) YE3501
( YP_001007662.1 )

type IV pilus integral membrane protein

NC_008800
(Yersinia enterocolitica 8081)

2e-130

3) SPAB_05361
( YP_001591467.1 )

hypothetical protein

NC_010102
(Salmonella enterica SGSC4150; SPB7)

2e-90

4) Ser39006_1486
( YP_008521868.1 )

Type II secretion system F domain-containing protein

NC_022268
(Serratia sp. ATCC 39006)

3e-89

5) EJP617_06740
( YP_005817242.1 )

hypothetical protein

NC_017445
(Erwinia sp. Ejp617)

2e-88

6) pilR
( NP_928384.1 )

hypothetical protein

NC_005126
(Photorhabdus luminescens TTO1)

7e-88

7) ECL_00420
( YP_003610935.1 )

type IV pilus biogenesis protein PilR

NC_014121
(Enterobacter cloacae ATCC 13047)

1e-86

8) PAGR_g3869
( YP_005994577.1 )

type IV pilus biogenesis protein PilR

NC_017554
(Pantoea ananatis PA13)

2e-82

9) pilR
( YP_005197433.1 )

type IV pilus biogenesis protein PilR

NC_016816
(Pantoea ananatis LMG 5342)

2e-80

10) ECSE_P1-0111
( YP_002296136.1 )

PilR protein

NC_011419
(Escherichia coli SE11)

2e-77

11) SEEH1578_00595
( YP_008248855.1 )

integral membrane protein

NC_021811
(Salmonella enterica 41578)

6e-73

12) CFSAN002069_23045
( YP_008253312.1 )

pilus biosynthesis protein PilR

NC_021813
(Salmonella enterica CFSAN002069)

6e-73

13) pilR
( YP_006203610.1 )

pilus integral membrane protein

NC_017718
(Salmonella enterica SL1344)

6e-73

14) SeHA_A0113
( YP_002043948.1 )

integral membrane protein

NC_011081
(Salmonella enterica SL476)

6e-73

15) pilR
( YP_006200934.1 )

integral membrane protein

NC_017675
(Salmonella enterica ST4/74)

6e-73

16) EKO11_4732
( YP_005280349.1 )

type II secretion system F domain-containing protein

NC_016904
(Escherichia coli KO11FL)

4e-69

17) pilR
( YP_006127341.1 )

Type IVB thin prepilin integral membrane protein

NC_017637
(Escherichia coli W)

4e-69

18) WFL_23660
( YP_006176110.1 )

putative transmembrane protein

NC_017665
(Escherichia coli W)

4e-69

19) O3K_25697
( YP_006781737.1 )

putative transmembrane protein

NC_018659
(Escherichia coli 2011C-3493)

7e-69

20) pilR
( YP_006137025.1 )

IncI1 conjugal transfer pilus biogenesis protein PilR

NC_017642
(Escherichia coli UMNK88)

7e-69

21) pilR
( NP_458634.1 )

putative membrane protein

NC_003198
(Salmonella enterica CT18)

3e-59

22) STBHUCCB_44970
( YP_005219917.1 )

hypothetical protein

NC_016832
(Salmonella enterica P-stx-12)

3e-59

23) pilR
( YP_002639905.1 )

hypothetical protein

NC_012125
(Salmonella enterica RKS4594)

3e-59

24) pilR
( NP_807845.1 )

hypothetical protein

NC_004631
(Salmonella enterica Ty2)

3e-59

25) TY21A_21620
( YP_007928484.1 )

hypothetical protein

NC_021176
(Salmonella enterica Ty21a)

4e-59

• Sequence Alignments

1) pilR in NC_009708


> NC_009708_P1|46|G45|153949596|YP_001402684.1|Yersinia_pseudotuberculosis_IP_31758|-|47517..48617|pilR|YpsIP31758_3730|type 
IV pilus biogenesis protein PilR
Length=366

 Score =  488 bits (1841),  Expect = 2e-139, Method: Compositional matrix adjust.
 Identities = 366/366 (100%), Positives = 366/366 (100%), Gaps = 0/366 (0%)

Query  1    MIFRPARNMSLAKRLRYELVRHTFSAHYRLEFYDALHFLLGNGHPLGAALRMIAEVHTDF  60
            MIFRPARNMSLAKRLRYELVRHTFSAHYRLEFYDALHFLLGNGHPLGAALRMIAEVHTDF
Sbjct  1    MIFRPARNMSLAKRLRYELVRHTFSAHYRLEFYDALHFLLGNGHPLGAALRMIAEVHTDF  60

Query  61   GKLWHPYGDLVDDCLESLSDNSTGRMLEDVLAAWGPLEEAALISAGMRSGKLPEALRQAG  120
            GKLWHPYGDLVDDCLESLSDNSTGRMLEDVLAAWGPLEEAALISAGMRSGKLPEALRQAG
Sbjct  61   GKLWHPYGDLVDDCLESLSDNSTGRMLEDVLAAWGPLEEAALISAGMRSGKLPEALRQAG  120

Query  121  KLVEARRRILTLVgkmslypllllslgsgmlgingmYLIPTLRKLSDPENWRGALGFMHA  180
            KLVEARRRILTLVGKMSLYPLLLLSLGSGMLGINGMYLIPTLRKLSDPENWRGALGFMHA
Sbjct  121  KLVEARRRILTLVGKMSLYPLLLLSLGSGMLGINGMYLIPTLRKLSDPENWRGALGFMHA  180

Query  181  VANVTDKQSTvavgviailvglvlWSIPRWRGRLRRFADNIMPWSVYKDIQGAVFLMNMA  240
            VANVTDKQSTVAVGVIAILVGLVLWSIPRWRGRLRRFADNIMPWSVYKDIQGAVFLMNMA
Sbjct  181  VANVTDKQSTVAVGVIAILVGLVLWSIPRWRGRLRRFADNIMPWSVYKDIQGAVFLMNMA  240

Query  241  ALLRANVQTLEALQILLPFSSPWLQERLDAIIACIEQGDHLGKALRNSGYAFPSKEAANY  300
            ALLRANVQTLEALQILLPFSSPWLQERLDAIIACIEQGDHLGKALRNSGYAFPSKEAANY
Sbjct  241  ALLRANVQTLEALQILLPFSSPWLQERLDAIIACIEQGDHLGKALRNSGYAFPSKEAANY  300

Query  301  LSLLTEGDGAPDIISRYGDRWLEQTLERVNKRVIGVMffslllifsffllilsMVMQIQD  360
            LSLLTEGDGAPDIISRYGDRWLEQTLERVNKRVIGVMFFSLLLIFSFFLLILSMVMQIQD
Sbjct  301  LSLLTEGDGAPDIISRYGDRWLEQTLERVNKRVIGVMFFSLLLIFSFFLLILSMVMQIQD  360

Query  361  MTSDSM  366
            MTSDSM
Sbjct  361  MTSDSM  366

2) YE3501 in NC_008800


> NC_009708_P1|46|G45|153949596|YP_001402684.1|Yersinia_pseudotuberculosis_IP_31758|-|47517..48617|pilR|YpsIP31758_3730|type 
IV pilus biogenesis protein PilR
Length=366

 Score =  458 bits (1726),  Expect = 2e-130, Method: Compositional matrix adjust.
 Identities = 314/364 (87%), Positives = 344/364 (95%), Gaps = 0/364 (0%)

Query  6    FRPVRNMSLGQRLRYELVRHTFSTRYRLQFYDALRFLLENGNPLGVALQMIAEVHTDFGK  65
            FRP RNMSL++RLRYELVRHTFS++YRL+FYDAL+FLL NG+PLG AL+MIAEVHTDFGK
Sbjct  3    FRPARNMSLAKRLRYELVRHTFSAHYRLEFYDALHFLLGNGHPLGAALRMIAEVHTDFGK  62

Query  66   HWHPYGDLVDDCLESLSDNGAGRTFENVLAAWGPLEEAALISAGMRSGKLPEALLQAGKL  125
             WHPYGDLVDDCLESLSDN++GR +E+VLAAWGPLEEAALISAGMRSGKLPEAL QAGKL
Sbjct  63   LWHPYGDLVDDCLESLSDNSTGRMLEDVLAAWGPLEEAALISAGMRSGKLPEALRQAGKL  122

Query  126  VEARRRILMLVSKMSLYPLLLFCLGGGMLVINGAYLIPTLRKLSDPQDWSGALGFMHALA  185
            VEARRRIL LV+KMSLYPLLL+ LG+GML ING YLIPTLRKLSDP++W GALGFMHA+A
Sbjct  123  VEARRRILTLVGKMSLYPLLLLSLGSGMLGINGMYLIPTLRKLSDPENWRGALGFMHAVA  182

Query  186  NFTDRQGTAAVGAVAILIGLVLWSIPRWRGRLRRLADNMVPWSVYQDIQGAVFLMNMAAL  245
            N TD+Q+T AVG +AIL+GLVLWSIPRWRGRLRR+ADN++PWSVY+DIQGAVFLMNMAAL
Sbjct  183  NVTDKQSTVAVGVIAILVGLVLWSIPRWRGRLRRFADNIMPWSVYKDIQGAVFLMNMAAL  242

Query  246  LRANVQTLEALYILQPFSSPWLQERLDAIIAGVEQGDHLGKALRNSGYQFPSKEAANYLS  305
            LRANVQTLEAL IL PFSSPWLQERLDAIIA +EQGDHLGKALRNSGY FPSKEAANYLS
Sbjct  243  LRANVQTLEALQILLPFSSPWLQERLDAIIACIEQGDHLGKALRNSGYAFPSKEAANYLS  302

Query  306  LLTEGDGAPDIIGRYGDRWLEQTLERVNKRVMVVMlfslllifsffllilsTVMQIQDMT  365
            LLTEGDGAPDII+RYGDRWLEQTLERVNKRV+ VM+FSLLLIFSFFLLILS VMQIQDMT
Sbjct  303  LLTEGDGAPDIISRYGDRWLEQTLERVNKRVIGVMFFSLLLIFSFFLLILSMVMQIQDMT  362

Query  366  SDSM  369
            SDSM
Sbjct  363  SDSM  366

3) SPAB_05361 in NC_010102


> NC_009708_P1|46|G45|153949596|YP_001402684.1|Yersinia_pseudotuberculosis_IP_31758|-|47517..48617|pilR|YpsIP31758_3730|type 
IV pilus biogenesis protein PilR
Length=366

 Score =  325 bits (1220),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 211/361 (59%), Positives = 281/361 (78%), Gaps = 0/361 (0%)

Query  7    FYPSREMSFPERIRYRLVRATFTGKYRQPFYETLRFLLENRKALKDALTMIGDVHTDFGR  66
            F P+R+MS++ R+RY LVR TF++ YR  FY++L+FLL N  +L  AL MI++VHTDFG+
Sbjct  3    FRPARNMSLAKRLRYELVRHTFSAHYRLEFYDALHFLLGNGHPLGAALRMIAEVHTDFGK  62

Query  67   RWHPYYELVQDCIEGVNDNRPGRALQDVLAAWAPYEEAALISAGMETGNIPAALMQADKL  126
             WHPY +LV+DC+E+++DN  GR L+DVLAAW+P EEAALISAGM +G++P AL QA+KL
Sbjct  63   LWHPYGDLVDDCLESLSDNSTGRMLEDVLAAWGPLEEAALISAGMRSGKLPEALRQAGKL  122

Query  127  IVARRRILGQVIFASVFPAALAILSTGLLLANNLALVPTMSKMSDPARWTGALGFMNGVA  186
            + ARRRIL  V   S++P  L  L++G+L  N + L+PT+ K+SDP  W GALGFM++VA
Sbjct  123  VEARRRILTLVGKMSLYPLLLLSLGSGMLGINGMYLIPTLRKLSDPENWRGALGFMHAVA  182

Query  187  KWSSEWGVASAATAAGLVLLSFWSLPRWRGRLRRCADWLLPWSVYKDLQGAVFLMNIGAL  246
            + +   +  + +  A LV L +WS+PRWRGRLRR AD ++PWSVYKD+QGAVFLMN++AL
Sbjct  183  NVTDKQSTVAVGVIAILVGLVLWSIPRWRGRLRRFADNIMPWSVYKDIQGAVFLMNMAAL  242

Query  247  LGSGVQELKALQILNGFAPPWLQERIEAAMECMSEGDSLGRALRNSGYDFPSREAVNYLS  306
            L + VQ L ALQIL  F++PWLQER++A + C+ +GD LG+ALRNSGY FPS+EA NYLS
Sbjct  243  LRANVQTLEALQILLPFSSPWLQERLDAIIACIEQGDHLGKALRNSGYAFPSKEAANYLS  302

Query  307  LLDKGDGAASLITNYADRWREQALARVARRANATKlfslvlimsffllilmmvmQIQDMN  366
            LL  GDGA+ +I+ Y+DRW EQ+L RV +R  +  +FSL+LI SFFLLIL MVMQIQDM 
Sbjct  303  LLTEGDGAPDIISRYGDRWLEQTLERVNKRVIGVMFFSLLLIFSFFLLILSMVMQIQDMT  362

Query  367  T  367
            +
Sbjct  363  S  363

4) Ser39006_1486 in NC_022268


> NC_009708_P1|46|G45|153949596|YP_001402684.1|Yersinia_pseudotuberculosis_IP_31758|-|47517..48617|pilR|YpsIP31758_3730|type 
IV pilus biogenesis protein PilR
Length=366

 Score =  322 bits (1206),  Expect = 3e-89, Method: Compositional matrix adjust.
 Identities = 209/357 (59%), Positives = 284/357 (80%), Gaps = 0/357 (0%)

Query  20   AQDMSLLQRIRYELVRRTFIGKYRQPFYETLRFLLENKKSFKEALSLIGEVHTDFGRRWH  79
            A++MSL +R+RYELVR+TF + YR  FY++L+FLL N  ++  AL +I+EVHTDFG+ WH
Sbjct  6    ARNMSLAKRLRYELVRHTFSAHYRLEFYDALHFLLGNGHPLGAALRMIAEVHTDFGKLWH  65

Query  80   PYSELVEDCLEAIADNSAGHSLPDVLAAWVPREEAALISAGIRSGSVPRSLEQADKLIVA  139
            PY++LV+DCLE+++DNS+G+ L DVLAAW P EEAALISAG+RSG +P +L QA+KL+ A
Sbjct  66   PYGDLVDDCLESLSDNSTGRMLEDVLAAWGPLEEAALISAGMRSGKLPEALRQAGKLVEA  125

Query  140  RRRILGQVLMASVYPIlllflgagllTVNNWLLIPTLSKLSSPDSWTGALGLMNHISAFT  199
            RRRIL  V   S+YP+LLL LG+G+L +N   LIPTL KLS P++W GALG+M+ ++  T
Sbjct  126  RRRILTLVGKMSLYPLLLLSLGSGMLGINGMYLIPTLRKLSDPENWRGALGFMHAVANVT  185

Query  200  SAYGGITGLCCVAFIALVFWSLPRWRGSLRRFADRLMPWSIYKDLQGAVFLMNVSALLEA  259
               + ++      +++LV+WS+PRWRG LRRFAD +MPWS+YKD+QGAVFLMN++ALL A
Sbjct  186  DKQSTVAVGVIAILVGLVLWSIPRWRGRLRRFADNIMPWSVYKDIQGAVFLMNMAALLRA  245

Query  260  GVPHLDAVRILHDFGSPWLQERLEAVTDGINNGVGLGKSLRDCGYQFPSQEAANYLSILG  319
             V  L+A++IL  F+SPWLQERL+A+   I++G  LGK+LR+ GY FPS+EAANYLS+L 
Sbjct  246  NVQTLEALQILLPFSSPWLQERLDAIIACIEQGDHLGKALRNSGYAFPSKEAANYLSLLT  305

Query  320  QGDGASRLISNYANRWLEQVLGLVARRANVAKlfslfliitffllmlGMVMQIQDMT  376
            +GDGA+ +IS Y++RWLEQ L  V +R     +FSL+LI++FFLL+L+MVMQIQDMT
Sbjct  306  EGDGAPDIISRYGDRWLEQTLERVNKRVIGVMFFSLLLIFSFFLLILSMVMQIQDMT  362

5) EJP617_06740 in NC_017445


> NC_009708_P1|46|G45|153949596|YP_001402684.1|Yersinia_pseudotuberculosis_IP_31758|-|47517..48617|pilR|YpsIP31758_3730|type 
IV pilus biogenesis protein PilR
Length=366

 Score =  319 bits (1196),  Expect = 2e-88, Method: Compositional matrix adjust.
 Identities = 207/361 (58%), Positives = 280/361 (78%), Gaps = 0/361 (0%)

Query  7    FSPQRDMSLPEWLRYRVVRSTFSAQYRQPFYETLHFLLENRKALDEALHMIGNVHTDFGA  66
            F P R+MSL+ +LRY +VR TFSA+YR  FY++LHFLL N  +L+ AL+MI++VHTDFG 
Sbjct  3    FRPARNMSLAKRLRYELVRHTFSAHYRLEFYDALHFLLGNGHPLGAALRMIAEVHTDFGK  62

Query  67   RWHPYHELVQDCLEGVSDNRPGRSVQDVLAVWAPREEAALIGAGMETGNIPRALLQANKL  126
             WHPY +LV+DCLE++SDN  GR ++DVLA W+P EEAALI+AGM +G++P AL QA KL
Sbjct  63   LWHPYGDLVDDCLESLSDNSTGRMLEDVLAAWGPLEEAALISAGMRSGKLPEALRQAGKL  122

Query  127  IVARQRILGQVIFASVYPavlgilgagllgvnnlvlvPTMSRISDPARWSGALGMMNGLA  186
            + AR+RIL  V   S+YP +L  LG+G+LG+N + L+PT+ ++SDP  W GALG M+++A
Sbjct  123  VEARRRILTLVGKMSLYPLLLLSLGSGMLGINGMYLIPTLRKLSDPENWRGALGFMHAVA  182

Query  187  QWTSAWGIAAAAVTGGLTVLTFWSLPRWRGRLRRYADRLMPWSVYKDLQGAVFLMNVGAL  246
            + T   +  A +V + L  L +WS+PRWRGRLRR+AD +MPWSVYKD+QGAVFLMN++AL
Sbjct  183  NVTDKQSTVAVGVIAILVGLVLWSIPRWRGRLRRFADNIMPWSVYKDIQGAVFLMNMAAL  242

Query  247  LGAGVPELKTLRTLHGFAAPWLQERIEAAMVCMSEGNSLGLALRNSGYDFPSREAVNYLS  306
            L A V  L +L+ L  F++PWLQER++A + C+ +G+ LG ALRNSGY FPS+EA NYLS
Sbjct  243  LRANVQTLEALQILLPFSSPWLQERLDAIIACIEQGDHLGKALRNSGYAFPSKEAANYLS  302

Query  307  LLDEGERAGELISNYADRWLEQALKRVARRANVTKLISLVLIMTFFLLMLQMVMQIQDIN  366
            LL EG+ A ++IS Y+DRWLEQ+L RV +R     ++SL+LI +FFLL+L MVMQIQD+ 
Sbjct  303  LLTEGDGAPDIISRYGDRWLEQTLERVNKRVIGVMFFSLLLIFSFFLLILSMVMQIQDMT  362

Query  367  T  367
            +
Sbjct  363  S  363

6) pilR in NC_005126


> NC_009708_P1|46|G45|153949596|YP_001402684.1|Yersinia_pseudotuberculosis_IP_31758|-|47517..48617|pilR|YpsIP31758_3730|type 
IV pilus biogenesis protein PilR
Length=366

 Score =  317 bits (1188),  Expect = 7e-88, Method: Compositional matrix adjust.
 Identities = 202/358 (57%), Positives = 283/358 (80%), Gaps = 2/358 (0%)

Query  2    REMSWGRRLRYVLVRHTFLPSYRIIFYEALRFLLENKIPLLKALRQIRDVYTHFDTHWHP  61
            R+MS ++RLRY LVRHTF + YR+ FY+AL+FLL N  PL  ALR I +V T+F+  WHP
Sbjct  7    RNMSLAKRLRYELVRHTFSAHYRLEFYDALHFLLGNGHPLGAALRMIAEVHTDFGKLWHP  66

Query  62   FAELIDDCISALTDNSQTNTLEHVLAVWGPVEEAALISAGMRSGHLPEALSQAMTLIGCR  121
            +++L+DDC+ +L+DNS    LE+VLA WGP+EEAALISAGMRSG LPEAL QA  L+  R
Sbjct  67   YGDLVDDCLESLSDNSTGRMLEDVLAAWGPLEEAALISAGMRSGKLPEALRQAGKLVEAR  126

Query  122  QRILMVSLRMMIYPlllvllmagllVITATELVPTLRNIADPENWQGVLAWLNGMATFFE  181
            +RIL +  +M +YPLLL+ L +G+L I +  L+PTLR+++DPENW+G L+ ++++A   +
Sbjct  127  RRILTLVGKMSLYPLLLLSLGSGMLGINGMYLIPTLRKLSDPENWRGALGFMHAVANVTD  186

Query  182  HAFLWCGVLLISFIVGVAY-SLPRWVNRLRRIADHFIPWSVYSDIQGAIFLLNMASLLRA  240
                  +V +I+++VG+   S+PRW  RLRR+AD+++PWSVY DIQGA+FL+NMA+LLRA
Sbjct  187  KQST-VAVGVIAILVGLVLWSIPRWRGRLRRFADNIMPWSVYKDIQGAVFLMNMAALLRA  245

Query  241  QVQTLDALIILQRFASPWLQIRLESIADCVREGDHFGRALHHCGYDFPSKEAVNFLSLLT  300
            +VQTL+AL IL  F+SPWLQ RL++I  C+ +GDH+G+AL++ GY FPSKEA N+LSLLT
Sbjct  246  NVQTLEALQILLPFSSPWLQERLDAIIACIEQGDHLGKALRNSGYAFPSKEAANYLSLLT  305

Query  301  EGDGTSEMIGRYGERWLDQTIVRVNRRANLVMLCSLLLVVGAFMLILLAVMEIQSMAN  358
            EGDG++++I+RYG+RWL+QT+ RVN+R   VM+ SLLL+ + F+LIL  VM+IQ M++
Sbjct  306  EGDGAPDIISRYGDRWLEQTLERVNKRVIGVMFFSLLLIFSFFLLILSMVMQIQDMTS  363

7) ECL_00420 in NC_014121


> NC_009708_P1|46|G45|153949596|YP_001402684.1|Yersinia_pseudotuberculosis_IP_31758|-|47517..48617|pilR|YpsIP31758_3730|type 
IV pilus biogenesis protein PilR
Length=366

 Score =  313 bits (1172),  Expect = 1e-86, Method: Compositional matrix adjust.
 Identities = 196/331 (60%), Positives = 253/331 (77%), Gaps = 0/331 (0%)

Query  7    FSPERDMSLAEMLRYRLVRATFTGQYRQPFYETLRFLLENRKALEEALAMIGEVHTDFGR  66
            F P R+MSLA  LRY LVR TF+++YR  FY++L+FLL N  +L  AL MI+EVHTDFG+
Sbjct  3    FRPARNMSLAKRLRYELVRHTFSAHYRLEFYDALHFLLGNGHPLGAALRMIAEVHTDFGK  62

Query  67   RWHPYYELVQDCLEGVKDNREGRSLKDVLAAWAPYEEAALISAGMETGNIPGALMQADKL  126
             WHPY +LV+DCLE++ DN  GR L DVLAAW+P EEAALISAGM +G++P AL QA+KL
Sbjct  63   LWHPYGDLVDDCLESLSDNSTGRMLEDVLAAWGPLEEAALISAGMRSGKLPEALRQAGKL  122

Query  127  IVARRLILGQVVFASVFPsalallsaglllannmalVPTLSKMSDPARWTGALGLMNGVA  186
            + ARR IL  V   S++P  L  L++G+L  N M L+PTL K+SDP  W GALG+M++VA
Sbjct  123  VEARRRILTLVGKMSLYPLLLLSLGSGMLGINGMYLIPTLRKLSDPENWRGALGFMHAVA  182

Query  187  QWTDRWgvtaagatvggvILAFWSLPRWRGRLRRVADFLMPWSVYQDLQGAVFLMNIGAL  246
            + TD+ +  A G     V L +WS+PRWRGRLRR AD +MPWSVY+D+QGAVFLMN++AL
Sbjct  183  NVTDKQSTVAVGVIAILVGLVLWSIPRWRGRLRRFADNIMPWSVYKDIQGAVFLMNMAAL  242

Query  247  LGAGVQELKALQILNEFAPPWLQERIEAAMECMSDGDSLGMALRQSGYDFPSREAVNYLS  306
            L A VQ L ALQIL  F++PWLQER++A + C+ +GD LG ALR+SGY FPS+EA NYLS
Sbjct  243  LRANVQTLEALQILLPFSSPWLQERLDAIIACIEQGDHLGKALRNSGYAFPSKEAANYLS  302

Query  307  LLDKGNSAASLITNYADRWLEQALTRVARRA  337
            LL  G++A+ +I+ Y+DRWLEQ+L RV +R 
Sbjct  303  LLTEGDGAPDIISRYGDRWLEQTLERVNKRV  333

8) PAGR_g3869 in NC_017554


> NC_009708_P1|46|G45|153949596|YP_001402684.1|Yersinia_pseudotuberculosis_IP_31758|-|47517..48617|pilR|YpsIP31758_3730|type 
IV pilus biogenesis protein PilR
Length=366

 Score =  299 bits (1120),  Expect = 2e-82, Method: Compositional matrix adjust.
 Identities = 203/361 (57%), Positives = 275/361 (77%), Gaps = 0/361 (0%)

Query  7    FRTERDLSLFEKCRYHAVRLTFTGSHRQVFYENMRFLLENRKHLETSLKMIGEVHTSFGE  66
            FR  R++SL  + RY+ VR TF++  R  FY+ ++FLL N   L ++L+MI+EVHT FG 
Sbjct  3    FRPARNMSLAKRLRYELVRHTFSAHYRLEFYDALHFLLGNGHPLGAALRMIAEVHTDFGK  62

Query  67   KWHPFLELTEDCLEGLRDNSPGRTLADVLAVWVPYEEAALISAGMKTGNIPVALMQADKL  126
             WHP+ +L +DCLE+L DNS GR L DVLA W P EEAALISAGM++G++P AL QA+KL
Sbjct  63   LWHPYGDLVDDCLESLSDNSTGRMLEDVLAAWGPLEEAALISAGMRSGKLPEALRQAGKL  122

Query  127  INAREQIFGQVVFASVYPlvllvlgggllgvNNQSLVPMLSRMSDPASWSGALGFMKGLS  186
            ++AR +I+  V   S+YPL+LL LG+G+LG+N   L+P L ++SDP +W GALGFM +++
Sbjct  123  VEARRRILTLVGKMSLYPLLLLSLGSGMLGINGMYLIPTLRKLSDPENWRGALGFMHAVA  182

Query  187  DWTEQWGPaaafsgaalvvaslWSLPRWRGRIRRLADSIMPWSLYKDLQGAVFLMNTGAL  246
            + T++ +  A    A LV   LWS+PRWRGR+RR+AD+IMPWS+YKD+QGAVFLMN +AL
Sbjct  183  NVTDKQSTVAVGVIAILVGLVLWSIPRWRGRLRRFADNIMPWSVYKDIQGAVFLMNMAAL  242

Query  247  LGAGVHELEAMQLLHSFAPPWLQERLDAAMDEMSEGNSLGMALRKSGYDFPSREAVNYLS  306
            L A V+ LEA+Q+L +F++PWLQERLDA +  + +G+ LG ALR+SGY FPS+EA NYLS
Sbjct  243  LRANVQTLEALQILLPFSSPWLQERLDAIIACIEQGDHLGKALRNSGYAFPSKEAANYLS  302

Query  307  LLDDGDGAAELISNYADRWLTQTLRRVARRANVTRLLSMLLIMGFFALIIMMVMQIQDSG  366
            LL +GDGA+++IS Y+DRWL QTL RV +R     ++S+LLI +FF LI+ MVMQIQD  
Sbjct  303  LLTEGDGAPDIISRYGDRWLEQTLERVNKRVIGVMFFSLLLIFSFFLLILSMVMQIQDMT  362

Query  367  S  367
            S
Sbjct  363  S  363

9) pilR in NC_016816


> NC_009708_P1|46|G45|153949596|YP_001402684.1|Yersinia_pseudotuberculosis_IP_31758|-|47517..48617|pilR|YpsIP31758_3730|type 
IV pilus biogenesis protein PilR
Length=366

 Score =  292 bits (1095),  Expect = 2e-80, Method: Compositional matrix adjust.
 Identities = 197/355 (56%), Positives = 270/355 (77%), Gaps = 0/355 (0%)

Query  1    MSVFERCRYHAVRLTFTGAHRQVFYENMRFLLENKKPLGISLKMIGDVHTSFGEKWHPYR  60
            MS+  R RY+ VR TF++  R  FY+ ++FLL N  PLG +L+MI++VHT FG  WHPY 
Sbjct  9    MSLAKRLRYELVRHTFSAHYRLEFYDALHFLLGNGHPLGAALRMIAEVHTDFGKLWHPYG  68

Query  61   ELIEDCLEGLSDNTPGRTLSDVLAIWVPYEEAALISAGLRTGRIPVSLVQADKLIRARQR  120
            +L++DCLE+LSDN+ GR L DVLA W P EEAALISAG+R+G++P +L QA+KL+ AR+R
Sbjct  69   DLVDDCLESLSDNSTGRMLEDVLAAWGPLEEAALISAGMRSGKLPEALRQAGKLVEARRR  128

Query  121  ILNQVVFASVYPlvlvvlgggllgvnnlalvPMLSNISDPAGWTGALGFMKDLSDWTaqw  180
            IL  V   S+YPL+L+ LG+G+LG+N + L+P L ++SDP  W GALGFM  +++ T + 
Sbjct  129  ILTLVGKMSLYPLLLLSLGSGMLGINGMYLIPTLRKLSDPENWRGALGFMHAVANVTDKQ  188

Query  181  gpaaaftgaaltmaSLWSLPRWRGRLRRLADNFLPWSLYKDLQGAVFLMNTGALLGAGVP  240
            +  A    A L    LWS+PRWRGRLRR+ADN++PWS+YKD+QGAVFLMN +ALL A V 
Sbjct  189  STVAVGVIAILVGLVLWSIPRWRGRLRRFADNIMPWSVYKDIQGAVFLMNMAALLRANVQ  248

Query  241  ELDALELLNSFAPPWLQERIEAAMDAMSEGNSLGMALRECGYDFPSREAVNYLSLLDDGK  300
             L+AL++L +F++PWLQER++A +  + +G+ LG ALR+ GY FPS+EA NYLSLL +G 
Sbjct  249  TLEALQILLPFSSPWLQERLDAIIACIEQGDHLGKALRNSGYAFPSKEAANYLSLLTEGD  308

Query  301  GSAEMISNYADRWLEQTLKRVARRANTTKFFSMLMILGFFALIILMVMQLQDTGS  355
            G++++IS Y+DRWLEQTL RV +R     FFS+L+I++FF LI+ MVMQ+QD  S
Sbjct  309  GAPDIISRYGDRWLEQTLERVNKRVIGVMFFSLLLIFSFFLLILSMVMQIQDMTS  363

10) ECSE_P1-0111 in NC_011419


> NC_009708_P1|46|G45|153949596|YP_001402684.1|Yersinia_pseudotuberculosis_IP_31758|-|47517..48617|pilR|YpsIP31758_3730|type 
IV pilus biogenesis protein PilR
Length=366

 Score =  282 bits (1057),  Expect = 2e-77, Method: Compositional matrix adjust.
 Identities = 175/362 (49%), Positives = 270/362 (75%), Gaps = 3/362 (0%)

Query  2    REMNFSQRLRRFIVRKTFSAPYRVQFYEALRFLLENKQPLKTALEQMRDAWTDFGRKWHP  61
            R+M++++RLR  +VR TFSA YR++FY+AL+FLL N +PL +AL  + +  TDFG+ WHP
Sbjct  7    RNMSLAKRLRYELVRHTFSAHYRLEFYDALHFLLGNGHPLGAALRMIAEVHTDFGKLWHP  66

Query  62   FAELATDCIESLRENSGENSLEYTLSLWVPQEEAAVISAGIRSGSIVDALQFATTLTDAK  121
            +++L  DC+ESL +NS    LE  L+ W P EEAA+ISAG+RSG + +AL+ A  L +A+
Sbjct  67   YGDLVDDCLESLSDNSTGRMLEDVLAAWGPLEEAALISAGMRSGKLPEALRQAGKLVEAR  126

Query  122  EQIHQAIWQMAIYPVGLLIMMTGTLYVLNTELIPELSKISSPDSWSGALGFLYGLSVFVD  181
             +I   + +M++YP+ LL + +G L +    LIP L K+S P++W GALGF+ +++   D
Sbjct  127  RRILTLVGKMSLYPLLLLSLGSGMLGINGMYLIPTLRKLSDPENWRGALGFMHAVANVTD  186

Query  182  NYGAICSVLFAVITGLISWSLPNWKSPDSVRTFADKIMPWSIYQDIQGATFLLNIAALLK  241
            + +++   ++A++ GL+ WS+P W++   +R FAD+IMPWS+Y+DIQGA FL+N+AALL+
Sbjct  187  KQSTVAVGVIAILVGLVLWSIPRWRG--RLRRFADNIMPWSVYKDIQGAVFLMNMAALLR  244

Query  242  AKMTTLNSLNILQEFASPWLSTRLDSIIYRVRQGDHLGLALRQCGYQFPSREAANFLSLL  301
            A++ TL++L+IL  F+SPWL  RLD+II  + QGDHLG ALR+ GY FPS+EAAN+LSLL
Sbjct  245  ANVQTLEALQILLPFSSPWLQERLDAIIACIEQGDHLGKALRNSGYAFPSKEAANYLSLL  304

Query  302  -QGDGATELISNYGQRWLSQTLQRVKKRANVIRLIMLIFLVMSLMLLVFAIMDIQSISDN  360
             +GDGA ++IS YG+RWL QTL+RV+KR   + ++ L+++   ++L++  +M+IQ ++ +
Sbjct  305  TEGDGAPDIISRYGDRWLEQTLERVNKRVIGVMFFSLLLIFSFFLLILSMVMQIQDMTSD  364

Query  361  SM  362
            SM
Sbjct  365  SM  366

11) SEEH1578_00595 in NC_021811


> NC_009708_P1|46|G45|153949596|YP_001402684.1|Yersinia_pseudotuberculosis_IP_31758|-|47517..48617|pilR|YpsIP31758_3730|type 
IV pilus biogenesis protein PilR
Length=366

 Score =  267 bits (1000),  Expect = 6e-73, Method: Compositional matrix adjust.
 Identities = 176/362 (49%), Positives = 270/362 (75%), Gaps = 3/362 (0%)

Query  2    REMNFSQRLRRFIVRKTFSAPYRVQFYEALRFLLENKQPLKTALEQMRDAWTDFGRKWHP  61
            R+M++++RLR  +VR TFSA YR++FY+AL+FLL N +PL +AL  + +  TDFG+ WHP
Sbjct  7    RNMSLAKRLRYELVRHTFSAHYRLEFYDALHFLLGNGHPLGAALRMIAEVHTDFGKLWHP  66

Query  62   FAELATDCIESLRENSGENSLEYTLSLWVPQEEAAVISAGIRSGSIVDALQFATTLTDAK  121
            +++L  DC+ESL +NS    LE  L+ W P EEAA+ISAG+RSG + +AL+ A  L +A+
Sbjct  67   YGDLVDDCLESLSDNSTGRMLEDVLAAWGPLEEAALISAGMRSGKLPEALRQAGKLVEAR  126

Query  122  EQIHQAIWQMAIYPVGLLIMMTGTLYVLNTELIPELSKISSPDSWSGALGFLYGLSVFVD  181
             +I   + +M++YP+ LL + +G L +    LIP L K+S P++W GALGF+ +++   D
Sbjct  127  RRILTLVGKMSLYPLLLLSLGSGMLGINGMYLIPTLRKLSDPENWRGALGFMHAVANVTD  186

Query  182  NYGAICAVLFAVITGLISWSLPNWKSPDSVRTFADKIMPWSIYQDIQGATFllnmaallk  241
            + +++   ++A++ GL+ WS+P W++   +R FAD+IMPWS+Y+DIQGA FL+NMAALL+
Sbjct  187  KQSTVAVGVIAILVGLVLWSIPRWRG--RLRRFADNIMPWSVYKDIQGAVFLMNMAALLR  244

Query  242  akmTTLNSLNILQEFASPWLSTRLDSIIYRVRQGDHLGLALRQCGYQFPSREAANFLSLL  301
            A++ TL++L+IL  F+SPWL  RLD+II  + QGDHLG ALR+ GY FPS+EAAN+LSLL
Sbjct  245  ANVQTLEALQILLPFSSPWLQERLDAIIACIEQGDHLGKALRNSGYAFPSKEAANYLSLL  304

Query  302  -QGDGATELISNYGQRWLSQTLQRVKKRANVIRLIMLIFLVMSLMLLVFAIMDIQSISDN  360
             +GDGA ++IS YG+RWL QTL+RV+KR   + ++ L+++   ++L++  +M+IQ ++ +
Sbjct  305  TEGDGAPDIISRYGDRWLEQTLERVNKRVIGVMFFSLLLIFSFFLLILSMVMQIQDMTSD  364

Query  361  SM  362
            SM
Sbjct  365  SM  366

12) CFSAN002069_23045 in NC_021813


> NC_009708_P1|46|G45|153949596|YP_001402684.1|Yersinia_pseudotuberculosis_IP_31758|-|47517..48617|pilR|YpsIP31758_3730|type 
IV pilus biogenesis protein PilR
Length=366

 Score =  267 bits (1000),  Expect = 6e-73, Method: Compositional matrix adjust.
 Identities = 176/362 (49%), Positives = 270/362 (75%), Gaps = 3/362 (0%)

Query  2    REMNFSQRLRRFIVRKTFSAPYRVQFYEALRFLLENKQPLKTALEQMRDAWTDFGRKWHP  61
            R+M++++RLR  +VR TFSA YR++FY+AL+FLL N +PL +AL  + +  TDFG+ WHP
Sbjct  7    RNMSLAKRLRYELVRHTFSAHYRLEFYDALHFLLGNGHPLGAALRMIAEVHTDFGKLWHP  66

Query  62   FAELATDCIESLRENSGENSLEYTLSLWVPQEEAAVISAGIRSGSIVDALQFATTLTDAK  121
            +++L  DC+ESL +NS    LE  L+ W P EEAA+ISAG+RSG + +AL+ A  L +A+
Sbjct  67   YGDLVDDCLESLSDNSTGRMLEDVLAAWGPLEEAALISAGMRSGKLPEALRQAGKLVEAR  126

Query  122  EQIHQAIWQMAIYPVGLLIMMTGTLYVLNTELIPELSKISSPDSWSGALGFLYGLSVFVD  181
             +I   + +M++YP+ LL + +G L +    LIP L K+S P++W GALGF+ +++   D
Sbjct  127  RRILTLVGKMSLYPLLLLSLGSGMLGINGMYLIPTLRKLSDPENWRGALGFMHAVANVTD  186

Query  182  NYGAICAVLFAVITGLISWSLPNWKSPDSVRTFADKIMPWSIYQDIQGATFllnmaallk  241
            + +++   ++A++ GL+ WS+P W++   +R FAD+IMPWS+Y+DIQGA FL+NMAALL+
Sbjct  187  KQSTVAVGVIAILVGLVLWSIPRWRG--RLRRFADNIMPWSVYKDIQGAVFLMNMAALLR  244

Query  242  akmTTLNSLNILQEFASPWLSTRLDSIIYRVRQGDHLGLALRQCGYQFPSREAANFLSLL  301
            A++ TL++L+IL  F+SPWL  RLD+II  + QGDHLG ALR+ GY FPS+EAAN+LSLL
Sbjct  245  ANVQTLEALQILLPFSSPWLQERLDAIIACIEQGDHLGKALRNSGYAFPSKEAANYLSLL  304

Query  302  -QGDGATELISNYGQRWLSQTLQRVKKRANVIRLIMLIFLVMSLMLLVFAIMDIQSISDN  360
             +GDGA ++IS YG+RWL QTL+RV+KR   + ++ L+++   ++L++  +M+IQ ++ +
Sbjct  305  TEGDGAPDIISRYGDRWLEQTLERVNKRVIGVMFFSLLLIFSFFLLILSMVMQIQDMTSD  364

Query  361  SM  362
            SM
Sbjct  365  SM  366

13) SeHA_A0113 in NC_011081


> NC_009708_P1|46|G45|153949596|YP_001402684.1|Yersinia_pseudotuberculosis_IP_31758|-|47517..48617|pilR|YpsIP31758_3730|type 
IV pilus biogenesis protein PilR
Length=366

 Score =  267 bits (1000),  Expect = 6e-73, Method: Compositional matrix adjust.
 Identities = 176/362 (49%), Positives = 270/362 (75%), Gaps = 3/362 (0%)

Query  2    REMNFSQRLRRFIVRKTFSAPYRVQFYEALRFLLENKQPLKTALEQMRDAWTDFGRKWHP  61
            R+M++++RLR  +VR TFSA YR++FY+AL+FLL N +PL +AL  + +  TDFG+ WHP
Sbjct  7    RNMSLAKRLRYELVRHTFSAHYRLEFYDALHFLLGNGHPLGAALRMIAEVHTDFGKLWHP  66

Query  62   FAELATDCIESLRENSGENSLEYTLSLWVPQEEAAVISAGIRSGSIVDALQFATTLTDAK  121
            +++L  DC+ESL +NS    LE  L+ W P EEAA+ISAG+RSG + +AL+ A  L +A+
Sbjct  67   YGDLVDDCLESLSDNSTGRMLEDVLAAWGPLEEAALISAGMRSGKLPEALRQAGKLVEAR  126

Query  122  EQIHQAIWQMAIYPVGLLIMMTGTLYVLNTELIPELSKISSPDSWSGALGFLYGLSVFVD  181
             +I   + +M++YP+ LL + +G L +    LIP L K+S P++W GALGF+ +++   D
Sbjct  127  RRILTLVGKMSLYPLLLLSLGSGMLGINGMYLIPTLRKLSDPENWRGALGFMHAVANVTD  186

Query  182  NYGAICAVLFAVITGLISWSLPNWKSPDSVRTFADKIMPWSIYQDIQGATFllnmaallk  241
            + +++   ++A++ GL+ WS+P W++   +R FAD+IMPWS+Y+DIQGA FL+NMAALL+
Sbjct  187  KQSTVAVGVIAILVGLVLWSIPRWRG--RLRRFADNIMPWSVYKDIQGAVFLMNMAALLR  244

Query  242  akmTTLNSLNILQEFASPWLSTRLDSIIYRVRQGDHLGLALRQCGYQFPSREAANFLSLL  301
            A++ TL++L+IL  F+SPWL  RLD+II  + QGDHLG ALR+ GY FPS+EAAN+LSLL
Sbjct  245  ANVQTLEALQILLPFSSPWLQERLDAIIACIEQGDHLGKALRNSGYAFPSKEAANYLSLL  304

Query  302  -QGDGATELISNYGQRWLSQTLQRVKKRANVIRLIMLIFLVMSLMLLVFAIMDIQSISDN  360
             +GDGA ++IS YG+RWL QTL+RV+KR   + ++ L+++   ++L++  +M+IQ ++ +
Sbjct  305  TEGDGAPDIISRYGDRWLEQTLERVNKRVIGVMFFSLLLIFSFFLLILSMVMQIQDMTSD  364

Query  361  SM  362
            SM
Sbjct  365  SM  366

14) pilR in NC_017718


> NC_009708_P1|46|G45|153949596|YP_001402684.1|Yersinia_pseudotuberculosis_IP_31758|-|47517..48617|pilR|YpsIP31758_3730|type 
IV pilus biogenesis protein PilR
Length=366

 Score =  267 bits (1000),  Expect = 6e-73, Method: Compositional matrix adjust.
 Identities = 176/362 (49%), Positives = 270/362 (75%), Gaps = 3/362 (0%)

Query  2    REMNFSQRLRRFIVRKTFSAPYRVQFYEALRFLLENKQPLKTALEQMRDAWTDFGRKWHP  61
            R+M++++RLR  +VR TFSA YR++FY+AL+FLL N +PL +AL  + +  TDFG+ WHP
Sbjct  7    RNMSLAKRLRYELVRHTFSAHYRLEFYDALHFLLGNGHPLGAALRMIAEVHTDFGKLWHP  66

Query  62   FAELATDCIESLRENSGENSLEYTLSLWVPQEEAAVISAGIRSGSIVDALQFATTLTDAK  121
            +++L  DC+ESL +NS    LE  L+ W P EEAA+ISAG+RSG + +AL+ A  L +A+
Sbjct  67   YGDLVDDCLESLSDNSTGRMLEDVLAAWGPLEEAALISAGMRSGKLPEALRQAGKLVEAR  126

Query  122  EQIHQAIWQMAIYPVGLLIMMTGTLYVLNTELIPELSKISSPDSWSGALGFLYGLSVFVD  181
             +I   + +M++YP+ LL + +G L +    LIP L K+S P++W GALGF+ +++   D
Sbjct  127  RRILTLVGKMSLYPLLLLSLGSGMLGINGMYLIPTLRKLSDPENWRGALGFMHAVANVTD  186

Query  182  NYGAICAVLFAVITGLISWSLPNWKSPDSVRTFADKIMPWSIYQDIQGATFllnmaallk  241
            + +++   ++A++ GL+ WS+P W++   +R FAD+IMPWS+Y+DIQGA FL+NMAALL+
Sbjct  187  KQSTVAVGVIAILVGLVLWSIPRWRG--RLRRFADNIMPWSVYKDIQGAVFLMNMAALLR  244

Query  242  akmTTLNSLNILQEFASPWLSTRLDSIIYRVRQGDHLGLALRQCGYQFPSREAANFLSLL  301
            A++ TL++L+IL  F+SPWL  RLD+II  + QGDHLG ALR+ GY FPS+EAAN+LSLL
Sbjct  245  ANVQTLEALQILLPFSSPWLQERLDAIIACIEQGDHLGKALRNSGYAFPSKEAANYLSLL  304

Query  302  -QGDGATELISNYGQRWLSQTLQRVKKRANVIRLIMLIFLVMSLMLLVFAIMDIQSISDN  360
             +GDGA ++IS YG+RWL QTL+RV+KR   + ++ L+++   ++L++  +M+IQ ++ +
Sbjct  305  TEGDGAPDIISRYGDRWLEQTLERVNKRVIGVMFFSLLLIFSFFLLILSMVMQIQDMTSD  364

Query  361  SM  362
            SM
Sbjct  365  SM  366

15) pilR in NC_017675


> NC_009708_P1|46|G45|153949596|YP_001402684.1|Yersinia_pseudotuberculosis_IP_31758|-|47517..48617|pilR|YpsIP31758_3730|type 
IV pilus biogenesis protein PilR
Length=366

 Score =  267 bits (1000),  Expect = 6e-73, Method: Compositional matrix adjust.
 Identities = 176/362 (49%), Positives = 270/362 (75%), Gaps = 3/362 (0%)

Query  2    REMNFSQRLRRFIVRKTFSAPYRVQFYEALRFLLENKQPLKTALEQMRDAWTDFGRKWHP  61
            R+M++++RLR  +VR TFSA YR++FY+AL+FLL N +PL +AL  + +  TDFG+ WHP
Sbjct  7    RNMSLAKRLRYELVRHTFSAHYRLEFYDALHFLLGNGHPLGAALRMIAEVHTDFGKLWHP  66

Query  62   FAELATDCIESLRENSGENSLEYTLSLWVPQEEAAVISAGIRSGSIVDALQFATTLTDAK  121
            +++L  DC+ESL +NS    LE  L+ W P EEAA+ISAG+RSG + +AL+ A  L +A+
Sbjct  67   YGDLVDDCLESLSDNSTGRMLEDVLAAWGPLEEAALISAGMRSGKLPEALRQAGKLVEAR  126

Query  122  EQIHQAIWQMAIYPVGLLIMMTGTLYVLNTELIPELSKISSPDSWSGALGFLYGLSVFVD  181
             +I   + +M++YP+ LL + +G L +    LIP L K+S P++W GALGF+ +++   D
Sbjct  127  RRILTLVGKMSLYPLLLLSLGSGMLGINGMYLIPTLRKLSDPENWRGALGFMHAVANVTD  186

Query  182  NYGAICAVLFAVITGLISWSLPNWKSPDSVRTFADKIMPWSIYQDIQGATFllnmaallk  241
            + +++   ++A++ GL+ WS+P W++   +R FAD+IMPWS+Y+DIQGA FL+NMAALL+
Sbjct  187  KQSTVAVGVIAILVGLVLWSIPRWRG--RLRRFADNIMPWSVYKDIQGAVFLMNMAALLR  244

Query  242  akmTTLNSLNILQEFASPWLSTRLDSIIYRVRQGDHLGLALRQCGYQFPSREAANFLSLL  301
            A++ TL++L+IL  F+SPWL  RLD+II  + QGDHLG ALR+ GY FPS+EAAN+LSLL
Sbjct  245  ANVQTLEALQILLPFSSPWLQERLDAIIACIEQGDHLGKALRNSGYAFPSKEAANYLSLL  304

Query  302  -QGDGATELISNYGQRWLSQTLQRVKKRANVIRLIMLIFLVMSLMLLVFAIMDIQSISDN  360
             +GDGA ++IS YG+RWL QTL+RV+KR   + ++ L+++   ++L++  +M+IQ ++ +
Sbjct  305  TEGDGAPDIISRYGDRWLEQTLERVNKRVIGVMFFSLLLIFSFFLLILSMVMQIQDMTSD  364

Query  361  SM  362
            SM
Sbjct  365  SM  366

16) EKO11_4732 in NC_016904


> NC_009708_P1|46|G45|153949596|YP_001402684.1|Yersinia_pseudotuberculosis_IP_31758|-|47517..48617|pilR|YpsIP31758_3730|type 
IV pilus biogenesis protein PilR
Length=366

 Score =  255 bits (952),  Expect = 4e-69, Method: Compositional matrix adjust.
 Identities = 167/330 (51%), Positives = 248/330 (76%), Gaps = 3/330 (0%)

Query  2    REMNFSQRLRRFIVRKTFSAPYRVQFYEALRFLLENKQPLKTALEQMRDAWTDFGRKWHP  61
            R+M++++RLR  +VR TFSA YR++FY+AL+FLL N +PL +AL  + +  TDFG+ WHP
Sbjct  7    RNMSLAKRLRYELVRHTFSAHYRLEFYDALHFLLGNGHPLGAALRMIAEVHTDFGKLWHP  66

Query  62   FAELATDCIESLRENSGENSLEYTLGLWVPQEEAAVISAGIRSGSIVDALQFATTLTDAK  121
            +++L  DC+ESL +NS    LE  L+ W P EEAA+ISAG+RSG + +AL+ A  L +A+
Sbjct  67   YGDLVDDCLESLSDNSTGRMLEDVLAAWGPLEEAALISAGMRSGKLPEALRQAGKLVEAR  126

Query  122  KQLHQAIWQMAIYPVGLLIMMTGTLYVLNTELIPVLSKISSPDSWSGALGFLYGLSVFVD  181
            +++   + +M++YP+ LL + +G L +    LIP L K+S P++W GALGF+ +++   D
Sbjct  127  RRILTLVGKMSLYPLLLLSLGSGMLGINGMYLIPTLRKLSDPENWRGALGFMHAVANVTD  186

Query  182  NYGAICAVLFAVVTGVISWSLKNWKS--RSLADNIMPWSIYKDIQGaafllnmaallkak  239
            + +++   ++A++ G++ WS+  W++  R +ADNIMPWS+YKDIQGA FL+NMAALL+A+
Sbjct  187  KQSTVAVGVIAILVGLVLWSIPRWRGRLRRFADNIMPWSVYKDIQGAVFLMNMAALLRAN  246

Query  240  mTTLNSLNVLQDFASPWLSTRLDSIIYRVRQGDHLGLALRQCGYQFPSREAANFLSLL-Q  298
            + TL++L++L  F+SPWL  RLD+II  + QGDHLG ALR+ GY FPS+EAAN+LSLL +
Sbjct  247  VQTLEALQILLPFSSPWLQERLDAIIACIEQGDHLGKALRNSGYAFPSKEAANYLSLLTE  306

Query  299  GDGATELIGNYGQRWLVQTLERVKKRAAVV  328
            GDGA ++I+ YG+RWL QTLERV+KR   V
Sbjct  307  GDGAPDIISRYGDRWLEQTLERVNKRVIGV  336

17) pilR in NC_017637


> NC_009708_P1|46|G45|153949596|YP_001402684.1|Yersinia_pseudotuberculosis_IP_31758|-|47517..48617|pilR|YpsIP31758_3730|type 
IV pilus biogenesis protein PilR
Length=366

 Score =  255 bits (952),  Expect = 4e-69, Method: Compositional matrix adjust.
 Identities = 167/330 (51%), Positives = 248/330 (76%), Gaps = 3/330 (0%)

Query  2    REMNFSQRLRRFIVRKTFSAPYRVQFYEALRFLLENKQPLKTALEQMRDAWTDFGRKWHP  61
            R+M++++RLR  +VR TFSA YR++FY+AL+FLL N +PL +AL  + +  TDFG+ WHP
Sbjct  7    RNMSLAKRLRYELVRHTFSAHYRLEFYDALHFLLGNGHPLGAALRMIAEVHTDFGKLWHP  66

Query  62   FAELATDCIESLRENSGENSLEYTLGLWVPQEEAAVISAGIRSGSIVDALQFATTLTDAK  121
            +++L  DC+ESL +NS    LE  L+ W P EEAA+ISAG+RSG + +AL+ A  L +A+
Sbjct  67   YGDLVDDCLESLSDNSTGRMLEDVLAAWGPLEEAALISAGMRSGKLPEALRQAGKLVEAR  126

Query  122  KQLHQAIWQMAIYPVGLLIMMTGTLYVLNTELIPVLSKISSPDSWSGALGFLYGLSVFVD  181
            +++   + +M++YP+ LL + +G L +    LIP L K+S P++W GALGF+ +++   D
Sbjct  127  RRILTLVGKMSLYPLLLLSLGSGMLGINGMYLIPTLRKLSDPENWRGALGFMHAVANVTD  186

Query  182  NYGAICAVLFAVVTGVISWSLKNWKS--RSLADNIMPWSIYKDIQGaafllnmaallkak  239
            + +++   ++A++ G++ WS+  W++  R +ADNIMPWS+YKDIQGA FL+NMAALL+A+
Sbjct  187  KQSTVAVGVIAILVGLVLWSIPRWRGRLRRFADNIMPWSVYKDIQGAVFLMNMAALLRAN  246

Query  240  mTTLNSLNVLQDFASPWLSTRLDSIIYRVRQGDHLGLALRQCGYQFPSREAANFLSLL-Q  298
            + TL++L++L  F+SPWL  RLD+II  + QGDHLG ALR+ GY FPS+EAAN+LSLL +
Sbjct  247  VQTLEALQILLPFSSPWLQERLDAIIACIEQGDHLGKALRNSGYAFPSKEAANYLSLLTE  306

Query  299  GDGATELIGNYGQRWLVQTLERVKKRAAVV  328
            GDGA ++I+ YG+RWL QTLERV+KR   V
Sbjct  307  GDGAPDIISRYGDRWLEQTLERVNKRVIGV  336

18) WFL_23660 in NC_017665


> NC_009708_P1|46|G45|153949596|YP_001402684.1|Yersinia_pseudotuberculosis_IP_31758|-|47517..48617|pilR|YpsIP31758_3730|type 
IV pilus biogenesis protein PilR
Length=366

 Score =  255 bits (952),  Expect = 4e-69, Method: Compositional matrix adjust.
 Identities = 167/330 (51%), Positives = 248/330 (76%), Gaps = 3/330 (0%)

Query  2    REMNFSQRLRRFIVRKTFSAPYRVQFYEALRFLLENKQPLKTALEQMRDAWTDFGRKWHP  61
            R+M++++RLR  +VR TFSA YR++FY+AL+FLL N +PL +AL  + +  TDFG+ WHP
Sbjct  7    RNMSLAKRLRYELVRHTFSAHYRLEFYDALHFLLGNGHPLGAALRMIAEVHTDFGKLWHP  66

Query  62   FAELATDCIESLRENSGENSLEYTLGLWVPQEEAAVISAGIRSGSIVDALQFATTLTDAK  121
            +++L  DC+ESL +NS    LE  L+ W P EEAA+ISAG+RSG + +AL+ A  L +A+
Sbjct  67   YGDLVDDCLESLSDNSTGRMLEDVLAAWGPLEEAALISAGMRSGKLPEALRQAGKLVEAR  126

Query  122  KQLHQAIWQMAIYPVGLLIMMTGTLYVLNTELIPVLSKISSPDSWSGALGFLYGLSVFVD  181
            +++   + +M++YP+ LL + +G L +    LIP L K+S P++W GALGF+ +++   D
Sbjct  127  RRILTLVGKMSLYPLLLLSLGSGMLGINGMYLIPTLRKLSDPENWRGALGFMHAVANVTD  186

Query  182  NYGAICAVLFAVVTGVISWSLKNWKS--RSLADNIMPWSIYKDIQGaafllnmaallkak  239
            + +++   ++A++ G++ WS+  W++  R +ADNIMPWS+YKDIQGA FL+NMAALL+A+
Sbjct  187  KQSTVAVGVIAILVGLVLWSIPRWRGRLRRFADNIMPWSVYKDIQGAVFLMNMAALLRAN  246

Query  240  mTTLNSLNVLQDFASPWLSTRLDSIIYRVRQGDHLGLALRQCGYQFPSREAANFLSLL-Q  298
            + TL++L++L  F+SPWL  RLD+II  + QGDHLG ALR+ GY FPS+EAAN+LSLL +
Sbjct  247  VQTLEALQILLPFSSPWLQERLDAIIACIEQGDHLGKALRNSGYAFPSKEAANYLSLLTE  306

Query  299  GDGATELIGNYGQRWLVQTLERVKKRAAVV  328
            GDGA ++I+ YG+RWL QTLERV+KR   V
Sbjct  307  GDGAPDIISRYGDRWLEQTLERVNKRVIGV  336

19) O3K_25697 in NC_018659


> NC_009708_P1|46|G45|153949596|YP_001402684.1|Yersinia_pseudotuberculosis_IP_31758|-|47517..48617|pilR|YpsIP31758_3730|type 
IV pilus biogenesis protein PilR
Length=366

 Score =  254 bits (949),  Expect = 7e-69, Method: Compositional matrix adjust.
 Identities = 167/330 (51%), Positives = 248/330 (76%), Gaps = 3/330 (0%)

Query  2    REMNFSQRLRRFIVRKTFSAPYRVQFYEALRFLLENKQPLKTALEQMRDAWTDFGRKWHP  61
            R+M++++RLR  +VR TFSA YR++FY+AL+FLL N +PL +AL  + +  TDFG+ WHP
Sbjct  7    RNMSLAKRLRYELVRHTFSAHYRLEFYDALHFLLGNGHPLGAALRMIAEVHTDFGKLWHP  66

Query  62   FAELATDCIESLRENSGENSLEYTLGLWVPQEEAAVISAGIRSGSIVDALQFATTLTDAK  121
            +++L  DC+ESL +NS    LE  L+ W P EEAA+ISAG+RSG + +AL+ A  L +A+
Sbjct  67   YGDLVDDCLESLSDNSTGRMLEDVLAAWGPLEEAALISAGMRSGKLPEALRQAGKLVEAR  126

Query  122  KQLHQAIWQMAIYPVGLLIMMTGTLYVLNTELIPVLSKISSPDSWSGALGFLYGLSLFVD  181
            +++   + +M++YP+ LL + +G L +    LIP L K+S P++W GALGF+ +++   D
Sbjct  127  RRILTLVGKMSLYPLLLLSLGSGMLGINGMYLIPTLRKLSDPENWRGALGFMHAVANVTD  186

Query  182  NYGAICAVLFAVVTGVISWSLKNWKS--RSLADNIMPWSIYKDIQGaafllnmaallkak  239
            + +++   ++A++ G++ WS+  W++  R +ADNIMPWS+YKDIQGA FL+NMAALL+A+
Sbjct  187  KQSTVAVGVIAILVGLVLWSIPRWRGRLRRFADNIMPWSVYKDIQGAVFLMNMAALLRAN  246

Query  240  mTTLNSLNVLQDFASPWLSTRLDSIIYRVRQGDHLGLALRQCGYQFPSREAANFLSLL-Q  298
            + TL++L++L  F+SPWL  RLD+II  + QGDHLG ALR+ GY FPS+EAAN+LSLL +
Sbjct  247  VQTLEALQILLPFSSPWLQERLDAIIACIEQGDHLGKALRNSGYAFPSKEAANYLSLLTE  306

Query  299  GDGATELIGNYGQRWLVQTLERVKKRAAVV  328
            GDGA ++I+ YG+RWL QTLERV+KR   V
Sbjct  307  GDGAPDIISRYGDRWLEQTLERVNKRVIGV  336

20) pilR in NC_017642


> NC_009708_P1|46|G45|153949596|YP_001402684.1|Yersinia_pseudotuberculosis_IP_31758|-|47517..48617|pilR|YpsIP31758_3730|type 
IV pilus biogenesis protein PilR
Length=366

 Score =  254 bits (949),  Expect = 7e-69, Method: Compositional matrix adjust.
 Identities = 167/330 (51%), Positives = 248/330 (76%), Gaps = 3/330 (0%)

Query  2    REMNFSQRLRRFIVRKTFSAPYRVQFYEALRFLLENKQPLKTALEQMRDAWTDFGRKWHP  61
            R+M++++RLR  +VR TFSA YR++FY+AL+FLL N +PL +AL  + +  TDFG+ WHP
Sbjct  7    RNMSLAKRLRYELVRHTFSAHYRLEFYDALHFLLGNGHPLGAALRMIAEVHTDFGKLWHP  66

Query  62   FAELATDCIESLRENSGENSLEYTLGLWVPQEEAAVISAGIRSGSIVDALQFATTLTDAK  121
            +++L  DC+ESL +NS    LE  L+ W P EEAA+ISAG+RSG + +AL+ A  L +A+
Sbjct  67   YGDLVDDCLESLSDNSTGRMLEDVLAAWGPLEEAALISAGMRSGKLPEALRQAGKLVEAR  126

Query  122  KQLHQAIWQMAIYPVGLLIMMTGTLYVLNTELIPVLSKISSPDSWSGALGFLYGLSLFVD  181
            +++   + +M++YP+ LL + +G L +    LIP L K+S P++W GALGF+ +++   D
Sbjct  127  RRILTLVGKMSLYPLLLLSLGSGMLGINGMYLIPTLRKLSDPENWRGALGFMHAVANVTD  186

Query  182  NYGAICAVLFAVVTGVISWSLKNWKS--RSLADNIMPWSIYKDIQGaafllnmaallkak  239
            + +++   ++A++ G++ WS+  W++  R +ADNIMPWS+YKDIQGA FL+NMAALL+A+
Sbjct  187  KQSTVAVGVIAILVGLVLWSIPRWRGRLRRFADNIMPWSVYKDIQGAVFLMNMAALLRAN  246

Query  240  mTTLNSLNVLQDFASPWLSTRLDSIIYRVRQGDHLGLALRQCGYQFPSREAANFLSLL-Q  298
            + TL++L++L  F+SPWL  RLD+II  + QGDHLG ALR+ GY FPS+EAAN+LSLL +
Sbjct  247  VQTLEALQILLPFSSPWLQERLDAIIACIEQGDHLGKALRNSGYAFPSKEAANYLSLLTE  306

Query  299  GDGATELIGNYGQRWLVQTLERVKKRAAVV  328
            GDGA ++I+ YG+RWL QTLERV+KR   V
Sbjct  307  GDGAPDIISRYGDRWLEQTLERVNKRVIGV  336

21) pilR in NC_012125


> NC_009708_P1|46|G45|153949596|YP_001402684.1|Yersinia_pseudotuberculosis_IP_31758|-|47517..48617|pilR|YpsIP31758_3730|type 
IV pilus biogenesis protein PilR
Length=366

 Score =  222 bits (827),  Expect = 3e-59, Method: Compositional matrix adjust.
 Identities = 156/315 (50%), Positives = 227/315 (73%), Gaps = 3/315 (0%)

Query  17   TSGYRLRFYRMLSLQMRNGVKLLEALEQISNMYTDFGQRTHGFGFLVDDCRAALTDNSGD  76
            ++ YRL FY  L + + NG  L  AL  I+++ TDFG+  H +G LVDDC  +L+DNS +
Sbjct  25   SAHYRLEFYDALHFLLGNGHPLGAALRMIAEVHTDFGKLWHPYGDLVDDCLESLSDNSTG  84

Query  77   NSLEHALANWVPAEEAALISAGMFSGRLPEALAEAEILIDCrrrirqaimrmaVYPLGCI  136
              LE+ LA W P EEAALISAGM SG+LPEAL +A  L++ RRRI   + +M++YPL  +
Sbjct  85   RMLEDVLAAWGPLEEAALISAGMRSGKLPEALRQAGKLVEARRRILTLVGKMSLYPLLLL  144

Query  137  AMLGGTLGVIQTQLIPTLAGMSDPQTWTGVLGSLNGLLIFFTEHGVVMGAGLALLVAWTR  196
            ++ +G LG+    LIPTL  +SDP+ W G LG ++++      ++ V  + +A+LV+   
Sbjct  145  SLGSGMLGINGMYLIPTLRKLSDPENWRGALGFMHAVANVTDKQSTVAVGVIAILVGLVL  204

Query  197  WSLSNWIRPDRLRRLADRHVPWAVYSDIQGAIFLINMGALLCAGVRTLTALQVIHRFASP  256
            WS++ W   +RLRR+AD  +PW+VY DIQGA+FL+NM+ALL A V+TL ALQ++  F+SP
Sbjct  205  WSIPRW--RGRLRRFADNIMPWSVYKDIQGAVFLMNMAALLRANVQTLEALQILLPFSSP  262

Query  257  WLVVRLNAVMEEVEEGASFGMALRECGYAFPSKEAVNYLSMVS-GDGAAQMIARFGQEWL  315
            WL  RL+A++  +E+G  +G ALR+ GYAFPSKEA NYLS+++ GDGA+++I+R+G+ WL
Sbjct  263  WLQERLDAIIACIEQGDHLGKALRNSGYAFPSKEAANYLSLLTEGDGAPDIISRYGDRWL  322

Query  316  EETVKRVNRRGIAVM  330
            E+T+ RVN+R I+VM
Sbjct  323  EQTLERVNKRVIGVM  337

22) pilR in NC_003198


> NC_009708_P1|46|G45|153949596|YP_001402684.1|Yersinia_pseudotuberculosis_IP_31758|-|47517..48617|pilR|YpsIP31758_3730|type 
IV pilus biogenesis protein PilR
Length=366

 Score =  222 bits (827),  Expect = 3e-59, Method: Compositional matrix adjust.
 Identities = 156/315 (50%), Positives = 227/315 (73%), Gaps = 3/315 (0%)

Query  17   TSGYRLRFYRMLSLQMRNGVKLLEALEQISNMYTDFGQRTHGFGFLVDDCRAALTDNSGD  76
            ++ YRL FY  L + + NG  L  AL  I+++ TDFG+  H +G LVDDC  +L+DNS +
Sbjct  25   SAHYRLEFYDALHFLLGNGHPLGAALRMIAEVHTDFGKLWHPYGDLVDDCLESLSDNSTG  84

Query  77   NSLEHALANWVPAEEAALISAGMFSGRLPEALAEAEILIDCrrrirqaimrmaVYPLGCI  136
              LE+ LA W P EEAALISAGM SG+LPEAL +A  L++ RRRI   + +M++YPL  +
Sbjct  85   RMLEDVLAAWGPLEEAALISAGMRSGKLPEALRQAGKLVEARRRILTLVGKMSLYPLLLL  144

Query  137  AMLGGTLGVIQTQLIPTLAGMSDPQTWTGVLGSLNGLLIFFTEHGVVMGAGLALLVAWTR  196
            ++ +G LG+    LIPTL  +SDP+ W G LG ++++      ++ V  + +A+LV+   
Sbjct  145  SLGSGMLGINGMYLIPTLRKLSDPENWRGALGFMHAVANVTDKQSTVAVGVIAILVGLVL  204

Query  197  WSLSNWIRPDRLRRLADRHVPWAVYSDIQGAIFLINMGALLCAGVRTLTALQVIHRFASP  256
            WS++ W   +RLRR+AD  +PW+VY DIQGA+FL+NM+ALL A V+TL ALQ++  F+SP
Sbjct  205  WSIPRW--RGRLRRFADNIMPWSVYKDIQGAVFLMNMAALLRANVQTLEALQILLPFSSP  262

Query  257  WLVVRLNAVMEEVEEGASFGMALRECGYAFPSKEAVNYLSMVS-GDGAAQMIARFGQEWL  315
            WL  RL+A++  +E+G  +G ALR+ GYAFPSKEA NYLS+++ GDGA+++I+R+G+ WL
Sbjct  263  WLQERLDAIIACIEQGDHLGKALRNSGYAFPSKEAANYLSLLTEGDGAPDIISRYGDRWL  322

Query  316  EETVKRVNRRGIAVM  330
            E+T+ RVN+R I+VM
Sbjct  323  EQTLERVNKRVIGVM  337

23) STBHUCCB_44970 in NC_016832


> NC_009708_P1|46|G45|153949596|YP_001402684.1|Yersinia_pseudotuberculosis_IP_31758|-|47517..48617|pilR|YpsIP31758_3730|type 
IV pilus biogenesis protein PilR
Length=366

 Score =  222 bits (827),  Expect = 3e-59, Method: Compositional matrix adjust.
 Identities = 156/315 (50%), Positives = 227/315 (73%), Gaps = 3/315 (0%)

Query  17   TSGYRLRFYRMLSLQMRNGVKLLEALEQISNMYTDFGQRTHGFGFLVDDCRAALTDNSGD  76
            ++ YRL FY  L + + NG  L  AL  I+++ TDFG+  H +G LVDDC  +L+DNS +
Sbjct  25   SAHYRLEFYDALHFLLGNGHPLGAALRMIAEVHTDFGKLWHPYGDLVDDCLESLSDNSTG  84

Query  77   NSLEHALANWVPAEEAALISAGMFSGRLPEALAEAEILIDCrrrirqaimrmaVYPLGCI  136
              LE+ LA W P EEAALISAGM SG+LPEAL +A  L++ RRRI   + +M++YPL  +
Sbjct  85   RMLEDVLAAWGPLEEAALISAGMRSGKLPEALRQAGKLVEARRRILTLVGKMSLYPLLLL  144

Query  137  AMLGGTLGVIQTQLIPTLAGMSDPQTWTGVLGSLNGLLIFFTEHGVVMGAGLALLVAWTR  196
            ++ +G LG+    LIPTL  +SDP+ W G LG ++++      ++ V  + +A+LV+   
Sbjct  145  SLGSGMLGINGMYLIPTLRKLSDPENWRGALGFMHAVANVTDKQSTVAVGVIAILVGLVL  204

Query  197  WSLSNWIRPDRLRRLADRHVPWAVYSDIQGAIFLINMGALLCAGVRTLTALQVIHRFASP  256
            WS++ W   +RLRR+AD  +PW+VY DIQGA+FL+NM+ALL A V+TL ALQ++  F+SP
Sbjct  205  WSIPRW--RGRLRRFADNIMPWSVYKDIQGAVFLMNMAALLRANVQTLEALQILLPFSSP  262

Query  257  WLVVRLNAVMEEVEEGASFGMALRECGYAFPSKEAVNYLSMVS-GDGAAQMIARFGQEWL  315
            WL  RL+A++  +E+G  +G ALR+ GYAFPSKEA NYLS+++ GDGA+++I+R+G+ WL
Sbjct  263  WLQERLDAIIACIEQGDHLGKALRNSGYAFPSKEAANYLSLLTEGDGAPDIISRYGDRWL  322

Query  316  EETVKRVNRRGIAVM  330
            E+T+ RVN+R I+VM
Sbjct  323  EQTLERVNKRVIGVM  337

24) pilR in NC_004631


> NC_009708_P1|46|G45|153949596|YP_001402684.1|Yersinia_pseudotuberculosis_IP_31758|-|47517..48617|pilR|YpsIP31758_3730|type 
IV pilus biogenesis protein PilR
Length=366

 Score =  222 bits (827),  Expect = 3e-59, Method: Compositional matrix adjust.
 Identities = 156/315 (50%), Positives = 227/315 (73%), Gaps = 3/315 (0%)

Query  17   TSGYRLRFYRMLSLQMRNGVKLLEALEQISNMYTDFGQRTHGFGFLVDDCRAALTDNSGD  76
            ++ YRL FY  L + + NG  L  AL  I+++ TDFG+  H +G LVDDC  +L+DNS +
Sbjct  25   SAHYRLEFYDALHFLLGNGHPLGAALRMIAEVHTDFGKLWHPYGDLVDDCLESLSDNSTG  84

Query  77   NSLEHALANWVPAEEAALISAGMFSGRLPEALAEAEILIDCrrrirqaimrmaVYPLGCI  136
              LE+ LA W P EEAALISAGM SG+LPEAL +A  L++ RRRI   + +M++YPL  +
Sbjct  85   RMLEDVLAAWGPLEEAALISAGMRSGKLPEALRQAGKLVEARRRILTLVGKMSLYPLLLL  144

Query  137  AMLGGTLGVIQTQLIPTLAGMSDPQTWTGVLGSLNGLLIFFTEHGVVMGAGLALLVAWTR  196
            ++ +G LG+    LIPTL  +SDP+ W G LG ++++      ++ V  + +A+LV+   
Sbjct  145  SLGSGMLGINGMYLIPTLRKLSDPENWRGALGFMHAVANVTDKQSTVAVGVIAILVGLVL  204

Query  197  WSLSNWIRPDRLRRLADRHVPWAVYSDIQGAIFLINMGALLCAGVRTLTALQVIHRFASP  256
            WS++ W   +RLRR+AD  +PW+VY DIQGA+FL+NM+ALL A V+TL ALQ++  F+SP
Sbjct  205  WSIPRW--RGRLRRFADNIMPWSVYKDIQGAVFLMNMAALLRANVQTLEALQILLPFSSP  262

Query  257  WLVVRLNAVMEEVEEGASFGMALRECGYAFPSKEAVNYLSMVS-GDGAAQMIARFGQEWL  315
            WL  RL+A++  +E+G  +G ALR+ GYAFPSKEA NYLS+++ GDGA+++I+R+G+ WL
Sbjct  263  WLQERLDAIIACIEQGDHLGKALRNSGYAFPSKEAANYLSLLTEGDGAPDIISRYGDRWL  322

Query  316  EETVKRVNRRGIAVM  330
            E+T+ RVN+R I+VM
Sbjct  323  EQTLERVNKRVIGVM  337

25) TY21A_21620 in NC_021176


> NC_009708_P1|46|G45|153949596|YP_001402684.1|Yersinia_pseudotuberculosis_IP_31758|-|47517..48617|pilR|YpsIP31758_3730|type 
IV pilus biogenesis protein PilR
Length=366

 Score =  221 bits (824),  Expect = 4e-59, Method: Compositional matrix adjust.
 Identities = 156/315 (50%), Positives = 227/315 (73%), Gaps = 3/315 (0%)

Query  17   TSGYRLRFYRMLSLQMRNGVKLLEALEQISNMYTDFGQRTHGFGFLVDDCRAALTDNSGD  76
            ++ YRL FY  L + + NG  L  AL  I+++ TDFG+  H +G LVDDC  +L+DNS +
Sbjct  25   SAHYRLEFYDALHFLLGNGHPLGAALRMIAEVHTDFGKLWHPYGDLVDDCLESLSDNSTG  84

Query  77   NSLEHALANWVPAEEAALISAGMFSGRLPEALAEAEILIDCrrrirqaimrmaVYPLGCI  136
              LE+ LA W P EEAALISAGM SG+LPEAL +A  L++ RRRI   + +M++YPL  +
Sbjct  85   RMLEDVLAAWGPLEEAALISAGMRSGKLPEALRQAGKLVEARRRILTLVGKMSLYPLLLL  144

Query  137  AMLGGTLGVIQTQLIPTLAGMSDPQTWTGVLGSLNGLLIFFTEHGVVMGAGLALLVAWTR  196
            ++ +G LG+    LIPTL  +SDP+ W G LG ++++      ++ V  + +A+LV+   
Sbjct  145  SLGSGMLGINGMYLIPTLRKLSDPENWRGALGFMHAVANVTDKQSTVAVGVIAILVGLVL  204

Query  197  WSLSNWIRPDRLRRLADRHVPWAVYSDIQGAIFLINMGALLCAGVRTLTALQVIHRFASP  256
            WS++ W   +RLRR+AD  +PW+VY DIQGA+FL+NM+ALL A V+TL ALQ++  F+SP
Sbjct  205  WSIPRW--RGRLRRFADNIMPWSVYKDIQGAVFLMNMAALLRANVQTLEALQILLPFSSP  262

Query  257  WLVVRLNAVMEEVEEGASFGMALRECGYAFPSKEAVNYLSMVS-GDGAAQMIARFGQEWL  315
            WL  RL+A++  +E+G  +G ALR+ GYAFPSKEA NYLS+++ GDGA+++I+R+G+ WL
Sbjct  263  WLQERLDAIIACIEQGDHLGKALRNSGYAFPSKEAANYLSLLTEGDGAPDIISRYGDRWL  322

Query  316  EETVKRVNRRGIAVM  330
            E+T+ RVN+R I+VM
Sbjct  323  EQTLERVNKRVIGVM  337