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PAthogenisity Island DataBase (PAI DB)

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Homologs of unnamed gene of AF326777

377

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) ECUMN_4868
( YP_002415449.1 )

putative transposase

NC_011751
(Escherichia coli UMN026)

0.0

2) EC042_4789
( YP_006099035.1 )

transposase

NC_017626
(Escherichia coli 042)

0.0

3) O3K_21990
( YP_006781060.1 )

transposase

NC_018658
(Escherichia coli 2011C-3493)

0.0

4) APECO78_02470
( YP_007379677.1 )

putative transposase

NC_020163
(Escherichia coli APEC O78)

0.0

5) O3M_21890
( YP_006771997.1 )

transposase

NC_018650
(Escherichia coli 2009EL-2050)

0.0

6) O3O_03390
( YP_006786186.1 )

transposase

NC_018661
(Escherichia coli 2009EL-2071)

0.0

7) EC55989_4970
( YP_002405816.1 )

transposase

NC_011748
(Escherichia coli 55989)

0.0

8) ECSF_4189
( YP_003352179.1 )

hypothetical protein

NC_013654
(Escherichia coli SE15)

0.0

9) ECH74115_B0118
( YP_002268493.1 )

IS66 family element, transposase

NC_011350
(Escherichia coli EC4115)

0.0

10) ECH74115_1651
( YP_002270105.1 )

IS66 family element, transposase

NC_011353
(Escherichia coli EC4115)

0.0

11) ECSP_1565
( YP_003077482.1 )

transposase

NC_013008
(Escherichia coli TW14359)

0.0

12) ECSP_6108
( YP_003082242.1 )

transposase

NC_013010
(Escherichia coli TW14359)

0.0

13) UMNK88_5237
( YP_006136866.1 )

hypothetical protein

NC_017641
(Escherichia coli UMNK88)

0.0

14) ETEC_3217
( YP_006116756.1 )

transposase

NC_017633
(Escherichia coli ETEC H10407)

0.0

15) ETEC_p666_0230
( YP_006203763.1 )

putative transposase for ISEc8 transposon

NC_017722
(Escherichia coli ETEC H10407)

0.0

16) ECH74115_0344
( YP_002268920.1 )

IS66 family element, transposase

NC_011353
(Escherichia coli EC4115)

0.0

17) ECH74115_1183
( YP_002269678.1 )

IS66 family element, transposase

NC_011353
(Escherichia coli EC4115)

0.0

18) ECH74115_1308
( YP_002269790.1 )

IS66 family element, transposase

NC_011353
(Escherichia coli EC4115)

0.0

19) ECH74115_1812
( YP_002270244.1 )

IS66 family element, transposase

NC_011353
(Escherichia coli EC4115)

0.0

20) ECH74115_2224
( YP_002270599.1 )

IS66 family element, transposase

NC_011353
(Escherichia coli EC4115)

0.0

21) ECH74115_2841
( YP_002271160.1 )

IS66 family element, transposase

NC_011353
(Escherichia coli EC4115)

0.0

22) ECH74115_4292
( YP_002272461.1 )

IS66 family element, transposase

NC_011353
(Escherichia coli EC4115)

0.0

23) ECH74115_5043
( YP_002273147.1 )

IS66 family element, transposase

NC_011353
(Escherichia coli EC4115)

0.0

24) Z0367
( NP_286017.1 )

hypothetical protein

NC_002655
(Escherichia coli EDL933)

0.0

25) Z1929
( NP_287406.1 )

hypothetical protein

NC_002655
(Escherichia coli EDL933)

0.0

26) Z2130
( NP_287584.1 )

prophage CP-933O IS protein

NC_002655
(Escherichia coli EDL933)

0.0

27) Z6016
( NP_287955.1 )

hypothetical protein

NC_002655
(Escherichia coli EDL933)

0.0

28) Z3156
( NP_288503.1 )

hypothetical protein

NC_002655
(Escherichia coli EDL933)

0.0

29) Z4337
( NP_289562.1 )

hypothetical protein

NC_002655
(Escherichia coli EDL933)

0.0

30) Z5098
( NP_290249.1 )

prophage-associated protein

NC_002655
(Escherichia coli EDL933)

0.0

31) ECs0330
( NP_308357.1 )

hypothetical protein

NC_002695
(Escherichia coli Sakai)

0.0

32) ECs1104
( NP_309131.1 )

hypothetical protein

NC_002695
(Escherichia coli Sakai)

0.0

33) ECs1307
( NP_309334.1 )

hypothetical protein

NC_002695
(Escherichia coli Sakai)

0.0

34) ECs1660
( NP_309687.1 )

hypothetical protein

NC_002695
(Escherichia coli Sakai)

0.0

35) ECs1818
( NP_309845.1 )

hypothetical protein

NC_002695
(Escherichia coli Sakai)

0.0

36) ECs2224
( NP_310251.1 )

hypothetical protein

NC_002695
(Escherichia coli Sakai)

0.0

37) ECs2791
( NP_310818.1 )

hypothetical protein

NC_002695
(Escherichia coli Sakai)

0.0

38) ECs4547
( NP_312574.1 )

hypothetical protein

NC_002695
(Escherichia coli Sakai)

0.0

39) ECSP_0339
( YP_003076298.1 )

transposase ISEc8

NC_013008
(Escherichia coli TW14359)

0.0

40) ECSP_1118
( YP_003077046.1 )

transposase ISEc8

NC_013008
(Escherichia coli TW14359)

0.0

41) ECSP_1238
( YP_003077161.1 )

transposase ISEc8

NC_013008
(Escherichia coli TW14359)

0.0

42) ECSP_1707
( YP_003077618.1 )

transposase ISEc8

NC_013008
(Escherichia coli TW14359)

0.0

43) ECSP_2086
( YP_003077980.1 )

transposase ISEc8

NC_013008
(Escherichia coli TW14359)

0.0

44) ECSP_2661
( YP_003078535.1 )

transposase, ISEc8

NC_013008
(Escherichia coli TW14359)

0.0

45) ECSP_3961
( YP_003079776.1 )

transposase, ISEc8

NC_013008
(Escherichia coli TW14359)

0.0

46) ECSP_4663
( YP_003080460.1 )

transposase, ISEc8

NC_013008
(Escherichia coli TW14359)

0.0

47) CDCO157_0324
( YP_006311183.1 )

hypothetical protein

NC_017906
(Escherichia coli Xuzhou21)

0.0

48) CDCO157_1070
( YP_006311925.1 )

hypothetical protein

NC_017906
(Escherichia coli Xuzhou21)

0.0

49) CDCO157_1252B
( YP_006312124.1 )

hypothetical protein

NC_017906
(Escherichia coli Xuzhou21)

0.0

50) CDCO157_1592
( YP_006312458.1 )

hypothetical protein

NC_017906
(Escherichia coli Xuzhou21)

0.0

51) CDCO157_1744
( YP_006312610.1 )

hypothetical protein

NC_017906
(Escherichia coli Xuzhou21)

0.0

52) CDCO157_2065
( YP_006312931.1 )

hypothetical protein

NC_017906
(Escherichia coli Xuzhou21)

0.0

53) CDCO157_2574
( YP_006313443.1 )

hypothetical protein

NC_017906
(Escherichia coli Xuzhou21)

0.0

54) CDCO157_3611
( YP_006314477.1 )

hypothetical protein

NC_017906
(Escherichia coli Xuzhou21)

0.0

55) CDCO157_4282
( YP_006315148.1 )

hypothetical protein

NC_017906
(Escherichia coli Xuzhou21)

0.0

56) SDY_4479
( YP_405846.1 )

ISSfl4 ORF3

NC_007606
(Shigella dysenteriae Sd197)

0.0

57) APECO1_O1CoBM93
( YP_001481248.1 )

hypothetical protein

NC_009837
(Escherichia coli APEC O1)

0.0

58) EcE24377A_D0019
( YP_001451489.1 )

IS66 family transposase

NC_009788
(Escherichia coli E24377A)

0.0

59) EcE24377A_E0038
( YP_001451577.1 )

IS66 family transposase

NC_009790
(Escherichia coli E24377A)

0.0

60) EcE24377A_E0068
( YP_001451603.1 )

IS66 family transposase

NC_009790
(Escherichia coli E24377A)

0.0

61) EcE24377A_0815
( YP_001461940.1 )

IS66 family transposase

NC_009801
(Escherichia coli E24377A)

0.0

62) EcE24377A_1407
( YP_001462509.1 )

IS66 family transposase

NC_009801
(Escherichia coli E24377A)

0.0

63) EcE24377A_1760
( YP_001462843.1 )

IS66 family transposase

NC_009801
(Escherichia coli E24377A)

0.0

64) EcE24377A_3343
( YP_001464345.1 )

IS66 family transposase

NC_009801
(Escherichia coli E24377A)

0.0

65) EcE24377A_3384
( YP_001464383.1 )

IS66 family transposase

NC_009801
(Escherichia coli E24377A)

0.0

66) EcE24377A_4860
( YP_001465791.1 )

IS66 family transposase

NC_009801
(Escherichia coli E24377A)

0.0

67) ECO111_1217
( YP_003233715.1 )

hypothetical protein

NC_013364
(Escherichia coli 11128)

0.0

68) Z1131
( NP_286666.1 )

hypothetical protein

NC_002655
(Escherichia coli EDL933)

0.0

69) Z1570
( NP_287074.1 )

hypothetical protein

NC_002655
(Escherichia coli EDL933)

0.0

70) ECO111_p3-06
( YP_003237755.1 )

hypothetical protein

NC_013366
(Escherichia coli 11128)

0.0

71) ECO111_p3-81
( YP_003237815.1 )

hypothetical protein

NC_013366
(Escherichia coli 11128)

0.0

72) ECO103_3808
( YP_003223653.1 )

hypothetical protein

NC_013353
(Escherichia coli 12009)

0.0

73) ECO26_2896
( YP_003229862.1 )

hypothetical protein

NC_013361
(Escherichia coli 11368)

0.0

74) ECO26_1266
( YP_003228317.1 )

hypothetical protein

NC_013361
(Escherichia coli 11368)

0.0

75) ECO26_p1-85
( YP_003237899.1 )

hypothetical protein

NC_013369
(Escherichia coli 11368)

0.0

76) UMNK88_1188
( YP_006132967.1 )

hypothetical protein

NC_017641
(Escherichia coli UMNK88)

0.0

77) ECED1_0320
( YP_002396378.1 )

putative transposase ORF 1, IS66 family

NC_011745
(Escherichia coli ED1a)

1e-177

78) O3O_26262
( YP_006786914.1 )

putative transposase ORF 1, IS66 family protein

NC_018662
(Escherichia coli 2009EL-2071)

1e-176

79) ECNA114_4532
( YP_006141655.1 )

hypothetical protein

NC_017644
(Escherichia coli NA114)

1e-176

80) ECABU_c33140
( YP_006107313.1 )

putative transposase

NC_017631
(Escherichia coli ABU 83972)

3e-176

81) c3645
( NP_755520.1 )

hypothetical protein

NC_004431
(Escherichia coli CFT073)

3e-176

82) i14_3338
( YP_006155417.1 )

hypothetical protein

NC_017652
(Escherichia coli clone D i14)

3e-176

83) i02_3338
( YP_006150498.1 )

hypothetical protein

NC_017651
(Escherichia coli clone D i2)

3e-176

84) ECUMN_3391
( YP_002414061.1 )

putative transposase ORF 1, IS66 family

NC_011751
(Escherichia coli UMN026)

1e-175

85) SbBS512_E1606
( YP_001880196.1 )

IS66 family element, transposase

NC_010658
(Shigella boydii CDC 3083-94)

2e-167

86) SbBS512_E0510
( YP_001879272.1 )

IS66 family element, transposase

NC_010658
(Shigella boydii CDC 3083-94)

1e-166

87) SbBS512_E0707
( YP_001879426.1 )

IS66 family element, transposase

NC_010658
(Shigella boydii CDC 3083-94)

1e-166

88) SbBS512_E0712
( YP_001879430.1 )

IS66 family element, transposase

NC_010658
(Shigella boydii CDC 3083-94)

1e-166

89) SbBS512_E1001
( YP_001879670.1 )

IS66 family element, transposase

NC_010658
(Shigella boydii CDC 3083-94)

1e-166

90) SbBS512_E1006
( YP_001879674.1 )

IS66 family element, transposase

NC_010658
(Shigella boydii CDC 3083-94)

1e-166

91) SbBS512_E1113
( YP_001879763.1 )

IS66 family element, transposase

NC_010658
(Shigella boydii CDC 3083-94)

1e-166

92) SbBS512_E1117
( YP_001879767.1 )

IS66 family element, transposase

NC_010658
(Shigella boydii CDC 3083-94)

1e-166

93) SbBS512_E1523
( YP_001880127.1 )

IS66 family element, transposase

NC_010658
(Shigella boydii CDC 3083-94)

1e-166

94) SbBS512_E1584
( YP_001880179.1 )

IS66 family element, transposase

NC_010658
(Shigella boydii CDC 3083-94)

1e-166

95) SbBS512_E1640
( YP_001880227.1 )

IS66 family element, transposase

NC_010658
(Shigella boydii CDC 3083-94)

1e-166

96) SbBS512_E1644
( YP_001880231.1 )

IS66 family element, transposase

NC_010658
(Shigella boydii CDC 3083-94)

1e-166

97) SbBS512_E1653
( YP_001880240.1 )

IS66 family element, transposase

NC_010658
(Shigella boydii CDC 3083-94)

1e-166

98) SbBS512_E1866
( YP_001880427.1 )

IS66 family element, transposase

NC_010658
(Shigella boydii CDC 3083-94)

1e-166

99) SbBS512_E2109
( YP_001880638.1 )

IS66 family element, transposase

NC_010658
(Shigella boydii CDC 3083-94)

1e-166

100) SbBS512_E2364
( YP_001880850.1 )

IS66 family element, transposase

NC_010658
(Shigella boydii CDC 3083-94)

1e-166

101) SbBS512_E2413
( YP_001880891.1 )

IS66 family element, transposase

NC_010658
(Shigella boydii CDC 3083-94)

1e-166

102) SbBS512_E2601
( YP_001881055.1 )

IS66 family element, transposase

NC_010658
(Shigella boydii CDC 3083-94)

1e-166

103) SbBS512_E2618
( YP_001881067.1 )

IS66 family element, transposase

NC_010658
(Shigella boydii CDC 3083-94)

1e-166

104) SbBS512_E2636
( YP_001881083.1 )

IS66 family element, transposase

NC_010658
(Shigella boydii CDC 3083-94)

1e-166

105) SbBS512_E2711
( YP_001881155.1 )

IS66 family element, transposase

NC_010658
(Shigella boydii CDC 3083-94)

1e-166

106) SbBS512_E2947
( YP_001881360.1 )

IS66 family element, transposase

NC_010658
(Shigella boydii CDC 3083-94)

1e-166

107) SbBS512_E2964
( YP_001881377.1 )

IS66 family element, transposase

NC_010658
(Shigella boydii CDC 3083-94)

1e-166

108) SbBS512_E3096
( YP_001881482.1 )

IS66 family element, transposase

NC_010658
(Shigella boydii CDC 3083-94)

1e-166

109) SbBS512_E3413
( YP_001881749.1 )

IS66 family element, transposase

NC_010658
(Shigella boydii CDC 3083-94)

1e-166

110) SbBS512_E3448
( YP_001881783.1 )

IS66 family element, transposase

NC_010658
(Shigella boydii CDC 3083-94)

1e-166

111) SbBS512_E3675
( YP_001881974.1 )

IS66 family element, transposase

NC_010658
(Shigella boydii CDC 3083-94)

1e-166

112) SbBS512_E3708
( YP_001882007.1 )

IS66 family element, transposase

NC_010658
(Shigella boydii CDC 3083-94)

1e-166

113) SbBS512_E4197
( YP_001882439.1 )

IS66 family element, transposase

NC_010658
(Shigella boydii CDC 3083-94)

1e-166

114) SbBS512_E4625
( YP_001882792.1 )

IS66 family element, transposase

NC_010658
(Shigella boydii CDC 3083-94)

1e-166

115) SbBS512_A0017
( YP_001883081.1 )

IS66 family element, transposase

NC_010660
(Shigella boydii CDC 3083-94)

1e-166

116) SbBS512_A0193
( YP_001883221.1 )

IS66 family element, transposase

NC_010660
(Shigella boydii CDC 3083-94)

1e-166

117) SbBS512_A0228
( YP_001883246.1 )

IS66 family element, transposase

NC_010660
(Shigella boydii CDC 3083-94)

1e-166

118) SbBS512_E4660
( YP_001882823.1 )

IS66 family element, transposase

NC_010658
(Shigella boydii CDC 3083-94)

2e-166

119) G2583_pO550105
( YP_003502727.1 )

Transposase-like protein

NC_013942
(Escherichia coli CB9615)

3e-166

120) SbBS512_E4652
( YP_001882817.1 )

IS66 family element, transposase

NC_010658
(Shigella boydii CDC 3083-94)

4e-166

121) SbBS512_A0146
( YP_001883177.1 )

IS66 family element, transposase

NC_010660
(Shigella boydii CDC 3083-94)

4e-166

122) P12B_c1722
( YP_006168745.1 )

ISEc8 transposase

NC_017663
(Escherichia coli P12b)

1e-165

123) KPHS_22580
( YP_005226558.1 )

hypothetical protein

NC_016845
(Klebsiella pneumoniae HS11286)

7e-166

124) ECO55CA74_26169
( YP_006162155.1 )

transposase-like protein

NC_017657
(Escherichia coli RM12579)

8e-166

125) APECO1_O1R214
( YP_001481570.1 )

ISEc8 transposase

NC_009838
(Escherichia coli APEC O1)

1e-165

126) P12B_c1021
( YP_006168060.1 )

ISEc8 transposase

NC_017663
(Escherichia coli P12b)

1e-165

127) P12B_c1045
( YP_006168084.1 )

ISEc8 transposase

NC_017663
(Escherichia coli P12b)

2e-165

128) P12B_c1606
( YP_006168634.1 )

ISEc8 transposase

NC_017663
(Escherichia coli P12b)

2e-165

129) ECO26_0875
( YP_003227935.1 )

hypothetical protein

NC_013361
(Escherichia coli 11368)

3e-165

130) ECO26_2614
( YP_003229595.1 )

hypothetical protein

NC_013361
(Escherichia coli 11368)

3e-165

131) ECO26_5482
( YP_003232349.1 )

hypothetical protein

NC_013361
(Escherichia coli 11368)

3e-165

132) EC55989_2248
( YP_002403284.1 )

transposase ORF 1, IS66 family

NC_011748
(Escherichia coli 55989)

9e-165

133) ECS88_2087
( YP_002391784.1 )

transposase ORF 1, IS66 family

NC_011742
(Escherichia coli S88)

9e-165

134) ECO26_2903
( YP_003229868.1 )

hypothetical protein

NC_013361
(Escherichia coli 11368)

2e-164

135) ECO26_3155
( YP_003230106.1 )

hypothetical protein

NC_013361
(Escherichia coli 11368)

2e-164

136) ECO26_5403
( YP_003232279.1 )

hypothetical protein

NC_013361
(Escherichia coli 11368)

2e-164

137) ECED1_5010
( YP_002400762.1 )

putative transposase ORF 1, IS66 family

NC_011745
(Escherichia coli ED1a)

7e-163

138) ECs3866
( NP_311893.1 )

hypothetical protein

NC_002695
(Escherichia coli Sakai)

1e-162

139) ETEC_2142
( YP_006115703.1 )

transposase

NC_017633
(Escherichia coli ETEC H10407)

9e-163

140) O3M_09465
( YP_006769548.1 )

transposase ORF 1, IS66 family protein

NC_018650
(Escherichia coli 2009EL-2050)

2e-162

141) O3O_16120
( YP_006783674.1 )

transposase ORF 1, IS66 family protein

NC_018661
(Escherichia coli 2009EL-2071)

2e-162

142) O3K_09500
( YP_006778601.1 )

transposase ORF 1, IS66 family protein

NC_018658
(Escherichia coli 2011C-3493)

2e-162

143) SSON53_15760
( YP_005457660.1 )

protein encoded within IS

NC_016822
(Shigella sonnei 53G)

3e-162

144) SSON_2666
( YP_311524.1 )

protein encoded within IS

NC_007384
(Shigella sonnei Ss046)

3e-162

145) ECP_3843
( YP_671715.1 )

transposase

NC_008253
(Escherichia coli 536)

2e-161

146) P12B_c1603
( YP_006168631.1 )

hypothetical protein

NC_017663
(Escherichia coli P12b)

4e-150

147) c3563
( NP_755438.1 )

hypothetical protein

NC_004431
(Escherichia coli CFT073)

2e-122

148) c3615
( NP_755490.1 )

hypothetical protein

NC_004431
(Escherichia coli CFT073)

4e-103

149) Bcen2424_6857
( YP_840479.1 )

transposase IS66

NC_008545
(Burkholderia cenocepacia HI2424)

5e-103

150) Pat9b_4123
( YP_004119654.1 )

transposase IS66

NC_014842
(Pantoea sp. At-9b)

3e-102

151) XNC1_0578
( YP_003710884.1 )

transposase

NC_014228
(Xenorhabdus nematophila ATCC 19061)

3e-102

152) Pat9b_4110
( YP_004119644.1 )

transposase IS66

NC_014842
(Pantoea sp. At-9b)

5e-102

153) XNC1_4274
( YP_003714370.1 )

transposase

NC_014228
(Xenorhabdus nematophila ATCC 19061)

2e-101

154) XNC1_2014
( YP_003712254.1 )

transposase

NC_014228
(Xenorhabdus nematophila ATCC 19061)

1e-100

155) XNC1_2350
( YP_003712584.1 )

transposase

NC_014228
(Xenorhabdus nematophila ATCC 19061)

1e-100

156) XNC1_2925
( YP_003713106.1 )

transposase

NC_014228
(Xenorhabdus nematophila ATCC 19061)

1e-100

157) UM146_21790
( YP_006113198.1 )

hypothetical protein

NC_017632
(Escherichia coli UM146)

7e-100

158) UTI89_C4915
( YP_543849.1 )

hypothetical protein

NC_007946
(Escherichia coli UTI89)

7e-100

159) pRALTA_0421
( YP_001796258.1 )

transposase, IS66 familly

NC_010529
(Cupriavidus taiwanensis LMG 19424)

2e-99

160) pRALTA_0519
( YP_001796332.1 )

transposase, IS66 family

NC_010529
(Cupriavidus taiwanensis LMG 19424)

2e-99

161) pRALTA_0535
( YP_001796342.1 )

transposase, IS66 family

NC_010529
(Cupriavidus taiwanensis LMG 19424)

2e-99

162) Pvag_pPag20143
( YP_003933479.1 )

hypothetical protein

NC_014563
(Pantoea vagans C9-1)

1e-98

163) UMNK88_pIncI148
( YP_006136995.1 )

putative transposase subunit

NC_017642
(Escherichia coli UMNK88)

5e-98

164) EC042_4588
( YP_006098859.1 )

transposase

NC_017626
(Escherichia coli 042)

9e-98

165) O3M_26417
( YP_006772831.1 )

transposase ORF1, IS66 family protein

NC_018654
(Escherichia coli 2009EL-2050)

9e-98

166) O3O_26067
( YP_006786886.1 )

transposase ORF1, IS66 family protein

NC_018662
(Escherichia coli 2009EL-2071)

9e-98

167) O3K_26452
( YP_006792615.1 )

transposase ORF1, IS66 family protein

NC_018666
(Escherichia coli 2011C-3493)

9e-98

168) EC55989_3274
( YP_002404245.1 )

transposase ORF1, IS66 family

NC_011748
(Escherichia coli 55989)

9e-98

169) SbBS512_E2143
( YP_001880666.1 )

IS66 family element, transposase

NC_010658
(Shigella boydii CDC 3083-94)

2e-97

170) ECO103_3554
( YP_003223421.1 )

hypothetical protein

NC_013353
(Escherichia coli 12009)

2e-97

171) ECO103_4925
( YP_003224741.1 )

hypothetical protein

NC_013353
(Escherichia coli 12009)

2e-97

172) G2583_3631
( YP_003501110.1 )

transposase-like protein

NC_013941
(Escherichia coli CB9615)

2e-97

173) ECO55CA74_17315
( YP_006160581.1 )

transposase-like protein

NC_017656
(Escherichia coli RM12579)

2e-97

174) S3549
( NP_838785.1 )

ISSfl3 orfC

NC_004741
(Shigella flexneri 2457T)

3e-97

175) S4031
( NP_839201.1 )

ISSfl3 orfC

NC_004741
(Shigella flexneri 2457T)

3e-97

176) Z4317
( NP_289543.1 )

hypothetical protein

NC_002655
(Escherichia coli EDL933)

3e-97

177) ECs3848
( NP_311875.1 )

hypothetical protein

NC_002695
(Escherichia coli Sakai)

3e-97

178) CDCO157_3597
( YP_006314463.1 )

hypothetical protein

NC_017906
(Escherichia coli Xuzhou21)

3e-97

179) SbBS512_A0078
( YP_001883126.1 )

transposase family

NC_010660
(Shigella boydii CDC 3083-94)

4e-97

180) SF0860
( NP_706786.1 )

ISSfl4 ORF3

NC_004337
(Shigella flexneri 301)

4e-97

181) SF4182
( NP_709896.1 )

ISSfl4 ORF3

NC_004337
(Shigella flexneri 301)

4e-97

182) SFV_1385
( YP_688884.1 )

ISSfl4 ORF3

NC_008258
(Shigella flexneri 8401)

4e-97

183) SFV_3312
( YP_690660.1 )

ISSfl4 ORF3

NC_008258
(Shigella flexneri 8401)

4e-97

184) SFV_4190
( YP_691479.1 )

ISSfl4 ORF3

NC_008258
(Shigella flexneri 8401)

4e-97

185) SFxv_4954
( YP_005712003.1 )

ISSfl3 orfC,D

NC_017319
(Shigella flexneri 2002017)

6e-97

186) S0901
( NP_836559.1 )

ISSfl3 orfC,D

NC_004741
(Shigella flexneri 2457T)

6e-97

187) ECSP_3944
( YP_003079761.1 )

hypothetical protein

NC_013008
(Escherichia coli TW14359)

5e-97

188) G2583_3645
( YP_003501122.1 )

transposase-like protein

NC_013941
(Escherichia coli CB9615)

7e-97

189) SFV_0723
( YP_688267.1 )

ISSfl4 ORF3

NC_008258
(Shigella flexneri 8401)

8e-97

190) CP0204
( NP_858337.1 )

ISSfl4 ORF3

NC_004851
(Shigella flexneri 301)

1e-96

191) CP0213
( NP_858346.1 )

ISSfl4 ORF3

NC_004851
(Shigella flexneri 301)

1e-96

192) E2348C_3238
( YP_002330708.1 )

transposase Orf3 of IS682

NC_011601
(Escherichia coli E2348/69)

2e-96

193) ECO55CA74_17395
( YP_006160595.1 )

transposase-like protein

NC_017656
(Escherichia coli RM12579)

2e-96

194) SF3324
( NP_709080.1 )

ISSfl4 ORF3

NC_004337
(Shigella flexneri 301)

2e-96

195) CP0112
( NP_858245.1 )

ISSfl4 ORF3

NC_004851
(Shigella flexneri 301)

2e-96

196) SFxv_5063
( YP_005712112.1 )

ISSfl4 ORF3

NC_017319
(Shigella flexneri 2002017)

3e-96

197) S2184
( NP_837625.1 )

ISSfl3 orfC

NC_004741
(Shigella flexneri 2457T)

3e-96

198) ECSE_P3-0016
( YP_002295970.1 )

truncated transposase

NC_011416
(Escherichia coli SE11)

8e-96

199) Z4340
( NP_289564.1 )

hypothetical protein

NC_002655
(Escherichia coli EDL933)

2e-95

200) ECs3869
( NP_311896.1 )

hypothetical protein

NC_002695
(Escherichia coli Sakai)

2e-95

201) ECSP_3963
( YP_003079778.1 )

hypothetical protein

NC_013008
(Escherichia coli TW14359)

2e-95

202) CDCO157_3613
( YP_006314479.1 )

hypothetical protein

NC_017906
(Escherichia coli Xuzhou21)

2e-95

203) BYI23_E000780
( YP_004980026.1 )

transposase IS66

NC_016591
(Burkholderia sp. YI23)

2e-95

204) ROD_50111
( YP_003368372.1 )

IS679 transposase C

NC_013716
(Citrobacter rodentium ICC168)

1e-94

205) pRALTA_0138
( YP_001796031.1 )

transposase, IS6 family

NC_010529
(Cupriavidus taiwanensis LMG 19424)

1e-94

206) ECO103_2294
( YP_003222217.1 )

hypothetical protein

NC_013353
(Escherichia coli 12009)

1e-93

207) E2348C_1103
( YP_002328657.1 )

transposase Orf3 of IS66 family IS element

NC_011601
(Escherichia coli E2348/69)

6e-94

208) ECO26_1523
( YP_003228564.1 )

hypothetical protein

NC_013361
(Escherichia coli 11368)

3e-93

209) tnpC
( NP_942798.1 )

transposase

NC_005241
(Ralstonia eutropha H16)

3e-93

210) ECABU_c48760
( YP_006108785.1 )

putative transposase

NC_017631
(Escherichia coli ABU 83972)

6e-93

211) O3K_23015
( YP_006781257.1 )

transposase

NC_018658
(Escherichia coli 2011C-3493)

2e-92

212) UMNK88_1268
( YP_006133047.1 )

hypothetical protein

NC_017641
(Escherichia coli UMNK88)

2e-92

213) ECO26_0606
( YP_003227679.1 )

hypothetical protein

NC_013361
(Escherichia coli 11368)

2e-92

214) ECO26_0892
( YP_003227948.1 )

hypothetical protein

NC_013361
(Escherichia coli 11368)

2e-92

215) ECO26_2210
( YP_003229207.1 )

hypothetical protein

NC_013361
(Escherichia coli 11368)

2e-92

216) ECO26_3406
( YP_003230348.1 )

hypothetical protein

NC_013361
(Escherichia coli 11368)

2e-92

217) ECO26_3947
( YP_003230872.1 )

hypothetical protein

NC_013361
(Escherichia coli 11368)

2e-92

218) ECO26_4930
( YP_003231826.1 )

hypothetical protein

NC_013361
(Escherichia coli 11368)

2e-92

219) ECO26_5440
( YP_003232313.1 )

hypothetical protein

NC_013361
(Escherichia coli 11368)

2e-92

220) ECO26_5473
( YP_003232341.1 )

hypothetical protein

NC_013361
(Escherichia coli 11368)

2e-92

221) O3M_26512
( YP_006772850.1 )

hypothetical protein

NC_018654
(Escherichia coli 2009EL-2050)

2e-92

222) O3O_25967
( YP_006786868.1 )

hypothetical protein

NC_018662
(Escherichia coli 2009EL-2071)

2e-92

223) O3K_26357
( YP_006792597.1 )

hypothetical protein

NC_018666
(Escherichia coli 2011C-3493)

2e-92

224) ETEC_0230
( YP_006113819.1 )

putative transposase

NC_017633
(Escherichia coli ETEC H10407)

2e-92

225) ETEC_0346
( YP_006113935.1 )

putative transposase

NC_017633
(Escherichia coli ETEC H10407)

2e-92

226) ETEC_1010
( YP_006114599.1 )

putative transposase

NC_017633
(Escherichia coli ETEC H10407)

2e-92

227) ETEC_1228
( YP_006114808.1 )

putative transposase

NC_017633
(Escherichia coli ETEC H10407)

2e-92

228) ETEC_1939
( YP_006115509.1 )

putative transposase

NC_017633
(Escherichia coli ETEC H10407)

2e-92

229) ETEC_2616
( YP_006116170.1 )

putative transposase

NC_017633
(Escherichia coli ETEC H10407)

2e-92

230) tnp1
( YP_006116500.1 )

putative transposase

NC_017633
(Escherichia coli ETEC H10407)

2e-92

231) ETEC_3211
( YP_006116752.1 )

transposase

NC_017633
(Escherichia coli ETEC H10407)

2e-92

232) ETEC_4459
( YP_006117998.1 )

putative transposase

NC_017633
(Escherichia coli ETEC H10407)

2e-92

233) ETEC_4712
( YP_006118246.1 )

issfl4 orf3

NC_017633
(Escherichia coli ETEC H10407)

2e-92

234) ETEC_p666_0180
( YP_006203758.1 )

putative transposase for IS66-family transposon

NC_017722
(Escherichia coli ETEC H10407)

2e-92

235) ETEC_p666_0740
( YP_006203805.1 )

putative transposase for ISEc8 transposon

NC_017722
(Escherichia coli ETEC H10407)

2e-92

236) join
( YP_006203823.1 )

IS66-family transposase

NC_017724
(Escherichia coli ETEC H10407)

2e-92

237) SEEH1578_00175
( YP_008248771.1 )

issfl4 orf3

NC_021811
(Salmonella enterica 41578)

2e-92

238) CFSAN001921_01925
( YP_008253796.1 )

transposase IS66

NC_021814
(Salmonella enterica CFSAN001921)

2e-92

239) CFSAN001921_03765
( YP_008254152.1 )

transposase IS66

NC_021814
(Salmonella enterica CFSAN001921)

2e-92

240) CFSAN001921_07750
( YP_008254930.1 )

transposase IS66

NC_021814
(Salmonella enterica CFSAN001921)

2e-92

241) CFSAN001921_10390
( YP_008255451.1 )

transposase IS66

NC_021814
(Salmonella enterica CFSAN001921)

2e-92

242) CFSAN001921_10895
( YP_008255551.1 )

transposase IS66

NC_021814
(Salmonella enterica CFSAN001921)

2e-92

243) CFSAN001921_11955
( YP_008255759.1 )

transposase IS66

NC_021814
(Salmonella enterica CFSAN001921)

2e-92

244) CFSAN001921_15755
( YP_008256499.1 )

transposase IS66

NC_021814
(Salmonella enterica CFSAN001921)

2e-92

245) CFSAN001921_17255
( YP_008256790.1 )

transposase IS66

NC_021814
(Salmonella enterica CFSAN001921)

2e-92

246) CFSAN001921_24540
( YP_008258165.1 )

transposase IS66

NC_021815
(Salmonella enterica CFSAN001921)

2e-92

247) CFSAN002069_23230
( YP_008253349.1 )

transposase IS66

NC_021813
(Salmonella enterica CFSAN002069)

2e-92

248) STU288_1p00250
( YP_007905784.1 )

issfl4 orf3

NC_021155
(Salmonella enterica U288)

2e-92

249) STU288_1p00980
( YP_007905930.1 )

issfl4 orf3

NC_021155
(Salmonella enterica U288)

2e-92

250) EcE24377A_D0063
( YP_001451525.1 )

IS66 family transposase

NC_009788
(Escherichia coli E24377A)

3e-92

251) EcE24377A_E0005
( YP_001451548.1 )

IS66 family transposase

NC_009790
(Escherichia coli E24377A)

3e-92

252) EcE24377A_E0047
( YP_001451586.1 )

IS66 family transposase

NC_009790
(Escherichia coli E24377A)

3e-92

253) EcE24377A_1757
( YP_001462840.1 )

IS66 family transposase

NC_009801
(Escherichia coli E24377A)

3e-92

254) EcE24377A_3368
( YP_001464369.1 )

IS66 family transposase

NC_009801
(Escherichia coli E24377A)

3e-92

255) EcE24377A_4879
( YP_001465808.1 )

IS66 family transposase

NC_009801
(Escherichia coli E24377A)

3e-92

256) ETEC_0554
( YP_006114143.1 )

putative transposase

NC_017633
(Escherichia coli ETEC H10407)

4e-92

257) STU288_09455
( YP_007902990.1 )

hypothetical protein

NC_021151
(Salmonella enterica U288)

4e-92

258) ETEC_3203
( YP_006116746.1 )

transposase

NC_017633
(Escherichia coli ETEC H10407)

4e-92

259) ETEC_2144
( YP_006115706.1 )

transposase

NC_017633
(Escherichia coli ETEC H10407)

7e-92

260) EC042_pAA062
( YP_006099181.1 )

transposase

NC_017627
(Escherichia coli 042)

7e-92

261) ROD_01921
( YP_003363837.1 )

ISCro1 transposase C

NC_013716
(Citrobacter rodentium ICC168)

2e-91

262) ROD_06431
( YP_003364268.1 )

ISCro1 transposase C

NC_013716
(Citrobacter rodentium ICC168)

2e-91

263) ROD_06821
( YP_003364305.1 )

ISCro1 transposase C

NC_013716
(Citrobacter rodentium ICC168)

2e-91

264) ROD_08991
( YP_003364519.1 )

ISCro1 transposase C

NC_013716
(Citrobacter rodentium ICC168)

2e-91

265) ROD_10351
( YP_003364656.1 )

ISCro1 transposase C

NC_013716
(Citrobacter rodentium ICC168)

2e-91

266) ROD_12861
( YP_003364872.1 )

ISCro1 transposase C

NC_013716
(Citrobacter rodentium ICC168)

2e-91

267) ROD_13911
( YP_003364974.1 )

ISCro1 transposase C

NC_013716
(Citrobacter rodentium ICC168)

2e-91

268) ROD_23611
( YP_003365905.1 )

ISCro1 transposase C

NC_013716
(Citrobacter rodentium ICC168)

2e-91

269) ROD_26411
( YP_003366178.1 )

ISCro1 transposase C

NC_013716
(Citrobacter rodentium ICC168)

2e-91

270) ROD_26481
( YP_003366183.1 )

ISCro1 transposase C

NC_013716
(Citrobacter rodentium ICC168)

2e-91

271) ROD_28231
( YP_003366349.1 )

ISCro1 transposase C

NC_013716
(Citrobacter rodentium ICC168)

2e-91

272) ROD_28321
( YP_003366356.1 )

ISCro1 transposase C

NC_013716
(Citrobacter rodentium ICC168)

2e-91

273) ROD_30161
( YP_003366523.1 )

ISCro1 transposase C

NC_013716
(Citrobacter rodentium ICC168)

2e-91

274) ROD_31891
( YP_003366676.1 )

ISCro1 transposase C

NC_013716
(Citrobacter rodentium ICC168)

2e-91

275) ROD_34321
( YP_003366893.1 )

ISCro1 transposase C

NC_013716
(Citrobacter rodentium ICC168)

2e-91

276) ROD_35321
( YP_003366989.1 )

ISCro1 transposase C

NC_013716
(Citrobacter rodentium ICC168)

2e-91

277) ROD_36251
( YP_003367072.1 )

ISCro1 transposase C

NC_013716
(Citrobacter rodentium ICC168)

2e-91

278) ROD_38851
( YP_003367323.1 )

ISCro1 transposase C

NC_013716
(Citrobacter rodentium ICC168)

2e-91

279) ROD_40711
( YP_003367507.1 )

ISCro1 transposase C

NC_013716
(Citrobacter rodentium ICC168)

2e-91

280) ROD_45801
( YP_003367986.1 )

ISCro1 transposase C

NC_013716
(Citrobacter rodentium ICC168)

2e-91

281) ROD_47731
( YP_003368173.1 )

ISCro1 transposase C

NC_013716
(Citrobacter rodentium ICC168)

2e-91

282) ROD_p1551
( YP_003368495.1 )

ISCro1 transposase C

NC_013717
(Citrobacter rodentium ICC168)

2e-91

283) bgla_4p1160
( YP_004362738.1 )

transposase IS66

NC_015383
(Burkholderia gladioli BSR3)

2e-91

284) PCA10_p0630
( YP_008116550.1 )

putative transposase

NC_021506
(Pseudomonas resinovorans NBRC 106553)

2e-91

285) PCA10_p1630
( YP_008116650.1 )

putative transposase

NC_021506
(Pseudomonas resinovorans NBRC 106553)

2e-91

286) SBO_2499
( YP_408877.1 )

protein encoded within IS

NC_007613
(Shigella boydii Sb227)

3e-91

287) SBO_2716
( YP_409074.1 )

protein encoded within IS

NC_007613
(Shigella boydii Sb227)

3e-91

288) EcSMS35_3126
( YP_001745140.1 )

IS66 family transposase orfB

NC_010498
(Escherichia coli SMS-3-5)

5e-89

289) PT7_0873
( YP_004416037.1 )

transposase TnpC protein

NC_015458
(Pusillimonas sp. T7-7)

5e-87

290) PT7_0898
( YP_004416062.1 )

transposase TnpC protein

NC_015458
(Pusillimonas sp. T7-7)

5e-87

291) PT7_2218
( YP_004417382.1 )

transposase TnpC protein

NC_015458
(Pusillimonas sp. T7-7)

5e-87

292) PT7_3177
( YP_004418341.1 )

transposase TnpC protein

NC_015458
(Pusillimonas sp. T7-7)

5e-87

293) SFxv_4852
( YP_005711901.1 )

ISSfl4 ORF3

NC_017319
(Shigella flexneri 2002017)

2e-86

294) CP0020
( NP_858153.1 )

ISSfl4 ORF3

NC_004851
(Shigella flexneri 301)

2e-86

295) SDY_P021
( YP_406022.1 )

putative IS orf, fragment

NC_007607
(Shigella dysenteriae Sd197)

1e-84

296) BYI23_E000130
( YP_004979961.1 )

ISAfe4, transposase

NC_016591
(Burkholderia sp. YI23)

8e-83

297) ECP_3840
( YP_671712.1 )

transposase

NC_008253
(Escherichia coli 536)

3e-81

298) PT7_2220
( YP_004417384.1 )

transposase TnpC protein

NC_015458
(Pusillimonas sp. T7-7)

3e-81

299) Tmz1t_0278
( YP_002353966.1 )

transposase IS66

NC_011662
(Thauera sp. MZ1T)

3e-79

300) RHE_CH00239
( YP_467790.1 )

insertion sequence transposase

NC_007761
(Rhizobium etli CFN 42)

1e-74

301) RHE_PA00084
( YP_471675.1 )

IS66 family insertion sequence transposase

NC_007762
(Rhizobium etli CFN 42)

1e-74

302) RHE_PA00098
( YP_471689.1 )

IS66 insertion sequence transposase

NC_007762
(Rhizobium etli CFN 42)

1e-74

303) RHE_CH02014
( YP_469526.1 )

insertion sequence transposase

NC_007761
(Rhizobium etli CFN 42)

6e-74

304) amb3320
( YP_422683.1 )

transposase

NC_007626
(Magnetospirillum magneticum AMB-1)

1e-73

305) DelCs14_1738
( YP_004487122.1 )

transposase IS66

NC_015563
(Delftia sp. Cs1-4)

5e-73

306) SbBS512_A0036
( YP_001883097.1 )

transposase family

NC_010660
(Shigella boydii CDC 3083-94)

9e-72

307) SSON_P019
( YP_313274.1 )

putative IS orf, fragment

NC_007385
(Shigella sonnei Ss046)

7e-71

308) APA01_01780
( YP_003186713.1 )

transposase

NC_013209
(Acetobacter pasteurianus IFO 3283)

3e-70

309) APA01_08390
( YP_003187367.1 )

transposase

NC_013209
(Acetobacter pasteurianus IFO 3283)

3e-70

310) APA01_17910
( YP_003188296.1 )

transposase

NC_013209
(Acetobacter pasteurianus IFO 3283)

3e-70

311) APA01_18220
( YP_003188327.1 )

transposase

NC_013209
(Acetobacter pasteurianus IFO 3283)

3e-70

312) APA01_21630
( YP_003188657.1 )

transposase

NC_013209
(Acetobacter pasteurianus IFO 3283)

3e-70

313) APA03_01780
( YP_005476779.1 )

transposase

NC_017100
(Acetobacter pasteurianus IFO 3283)

3e-70

314) APA03_08390
( YP_005477433.1 )

transposase

NC_017100
(Acetobacter pasteurianus IFO 3283)

3e-70

315) APA03_17910
( YP_005478364.1 )

transposase

NC_017100
(Acetobacter pasteurianus IFO 3283)

3e-70

316) APA03_18220
( YP_005478396.1 )

transposase

NC_017100
(Acetobacter pasteurianus IFO 3283)

3e-70

317) APA03_21630
( YP_005478726.1 )

transposase

NC_017100
(Acetobacter pasteurianus IFO 3283)

3e-70

318) APA12_01780
( YP_005479945.1 )

transposase

NC_017108
(Acetobacter pasteurianus IFO 3283)

3e-70

319) APA12_08390
( YP_005480599.1 )

transposase

NC_017108
(Acetobacter pasteurianus IFO 3283)

3e-70

320) APA12_17910
( YP_005481528.1 )

transposase

NC_017108
(Acetobacter pasteurianus IFO 3283)

3e-70

321) APA12_18220
( YP_005481559.1 )

transposase

NC_017108
(Acetobacter pasteurianus IFO 3283)

3e-70

322) APA12_21630
( YP_005481890.1 )

transposase

NC_017108
(Acetobacter pasteurianus IFO 3283)

3e-70

323) APA32_01780
( YP_005482635.1 )

transposase

NC_017111
(Acetobacter pasteurianus IFO 3283)

3e-70

324) APA32_08390
( YP_005483289.1 )

transposase

NC_017111
(Acetobacter pasteurianus IFO 3283)

3e-70

325) APA32_17910
( YP_005484218.1 )

transposase

NC_017111
(Acetobacter pasteurianus IFO 3283)

3e-70

326) APA32_18220
( YP_005484249.1 )

transposase

NC_017111
(Acetobacter pasteurianus IFO 3283)

3e-70

327) APA32_21630
( YP_005484580.1 )

transposase

NC_017111
(Acetobacter pasteurianus IFO 3283)

3e-70

328) APA07_01780
( YP_005485920.1 )

transposase

NC_017121
(Acetobacter pasteurianus IFO 3283)

3e-70

329) APA07_08390
( YP_005486574.1 )

transposase

NC_017121
(Acetobacter pasteurianus IFO 3283)

3e-70

330) APA07_17910
( YP_005487503.1 )

transposase

NC_017121
(Acetobacter pasteurianus IFO 3283)

3e-70

331) APA07_18220
( YP_005487534.1 )

transposase

NC_017121
(Acetobacter pasteurianus IFO 3283)

3e-70

332) APA07_21630
( YP_005487864.1 )

transposase

NC_017121
(Acetobacter pasteurianus IFO 3283)

3e-70

333) APA22_01780
( YP_005488725.1 )

transposase

NC_017125
(Acetobacter pasteurianus IFO 3283)

3e-70

334) APA22_08390
( YP_005489379.1 )

transposase

NC_017125
(Acetobacter pasteurianus IFO 3283)

3e-70

335) APA22_17910
( YP_005490310.1 )

transposase

NC_017125
(Acetobacter pasteurianus IFO 3283)

3e-70

336) APA22_18220
( YP_005490342.1 )

transposase

NC_017125
(Acetobacter pasteurianus IFO 3283)

3e-70

337) APA22_21630
( YP_005490672.1 )

transposase

NC_017125
(Acetobacter pasteurianus IFO 3283)

3e-70

338) APA26_01780
( YP_005497827.1 )

transposase

NC_017146
(Acetobacter pasteurianus IFO 3283)

3e-70

339) APA26_08390
( YP_005498481.1 )

transposase

NC_017146
(Acetobacter pasteurianus IFO 3283)

3e-70

340) APA26_17910
( YP_005499412.1 )

transposase

NC_017146
(Acetobacter pasteurianus IFO 3283)

3e-70

341) APA26_18220
( YP_005499444.1 )

transposase

NC_017146
(Acetobacter pasteurianus IFO 3283)

3e-70

342) APA26_21630
( YP_005499774.1 )

transposase

NC_017146
(Acetobacter pasteurianus IFO 3283)

3e-70

343) APA42C_01780
( YP_005500693.1 )

transposase

NC_017150
(Acetobacter pasteurianus IFO 3283)

3e-70

344) APA42C_08390
( YP_005501347.1 )

transposase

NC_017150
(Acetobacter pasteurianus IFO 3283)

3e-70

345) APA42C_17910
( YP_005502210.1 )

transposase

NC_017150
(Acetobacter pasteurianus IFO 3283)

3e-70

346) APA42C_18220
( YP_005502241.1 )

transposase

NC_017150
(Acetobacter pasteurianus IFO 3283)

3e-70

347) APA42C_21630
( YP_005502571.1 )

transposase

NC_017150
(Acetobacter pasteurianus IFO 3283)

3e-70

348) APA386B_487
( YP_008391322.1 )

transposase

NC_021991
(Acetobacter pasteurianus 386B)

3e-69

349) Bpro_5535
( YP_552283.1 )

transposase IS66

NC_007950
(Polaromonas sp. JS666)

6e-69

350) B932_3616
( YP_006986086.1 )

transposase

NC_019397
(Gluconobacter oxydans H24)

4e-68

351) Smed_6513
( YP_001314996.1 )

transposase IS66

NC_009622
(Sinorhizobium medicae WSM419)

5e-68

352) SinmeB_4091
( YP_005716204.1 )

transposase IS66

NC_017323
(Sinorhizobium meliloti BL225C)

5e-68

353) SinmeB_5860
( YP_005717816.1 )

transposase IS66

NC_017324
(Sinorhizobium meliloti BL225C)

5e-68

354) B932_3380
( YP_006985856.1 )

transposase

NC_019396
(Gluconobacter oxydans H24)

5e-68

355) SinmeB_1295
( YP_005713460.1 )

transposase IS66

NC_017322
(Sinorhizobium meliloti BL225C)

1e-67

356) SinmeB_5967
( YP_005717892.1 )

transposase IS66

NC_017324
(Sinorhizobium meliloti BL225C)

2e-67

357) Smed_6486
( YP_001314974.1 )

transposase IS66

NC_009622
(Sinorhizobium medicae WSM419)

9e-66

358) AZL_027520
( YP_003449934.1 )

transposase

NC_013854
(Azospirillum sp. B510)

4e-63

359) Rleg_4905
( YP_002973085.1 )

transposase IS66

NC_012848
(Rhizobium leguminosarum WSM1325)

6e-63

360) Xaut_2254
( YP_001417154.1 )

transposase IS66

NC_009720
(Xanthobacter autotrophicus Py2)

1e-62

361) amb0403
( YP_419766.1 )

transposase

NC_007626
(Magnetospirillum magneticum AMB-1)

5e-62

362) Rvan_0391
( YP_004010776.1 )

transposase IS66

NC_014664
(Rhodomicrobium vannielii ATCC 17100)

1e-61

363) Rvan_0412
( YP_004010796.1 )

transposase IS66

NC_014664
(Rhodomicrobium vannielii ATCC 17100)

1e-61

364) Rvan_1442
( YP_004011796.1 )

transposase IS66

NC_014664
(Rhodomicrobium vannielii ATCC 17100)

1e-61

365) Rvan_1478
( YP_004011832.1 )

transposase IS66

NC_014664
(Rhodomicrobium vannielii ATCC 17100)

1e-61

366) Rvan_1502
( YP_004011853.1 )

transposase IS66

NC_014664
(Rhodomicrobium vannielii ATCC 17100)

1e-61

367) Rvan_1902
( YP_004012237.1 )

transposase IS66

NC_014664
(Rhodomicrobium vannielii ATCC 17100)

1e-61

368) Rvan_2050
( YP_004012377.1 )

transposase IS66

NC_014664
(Rhodomicrobium vannielii ATCC 17100)

1e-61

369) Rvan_2449
( YP_004012766.1 )

transposase IS66

NC_014664
(Rhodomicrobium vannielii ATCC 17100)

1e-61

370) Rvan_2671
( YP_004012981.1 )

transposase IS66

NC_014664
(Rhodomicrobium vannielii ATCC 17100)

1e-61

371) C770_GR4pD0944
( YP_007194654.1 )

Transposase-like protein

NC_019849
(Sinorhizobium meliloti GR4)

2e-61

372) Caul_5388
( YP_001672164.1 )

transposase IS66

NC_010333
(Caulobacter sp. K31)

4e-61

373) RHE_PA00101
( YP_471692.1 )

IS66 family insertion sequence transposase

NC_007762
(Rhizobium etli CFN 42)

1e-60

374) AZL_a06260
( YP_003450701.1 )

transposase

NC_013855
(Azospirillum sp. B510)

3e-60

375) amb3325
( YP_422688.1 )

transposase

NC_007626
(Magnetospirillum magneticum AMB-1)

3e-60

376) Rvan_2476
( YP_004012791.1 )

transposase

NC_014664
(Rhodomicrobium vannielii ATCC 17100)

5e-60

377) Xaut_4817
( YP_001409266.1 )

transposase IS66

NC_009717
(Xanthobacter autotrophicus Py2)

3e-56

• Sequence Alignments

1) ECUMN_4868 in NC_011751


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  748 bits (2831),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 458/461 (99%), Positives = 461/461 (100%), Gaps = 0/461 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSLIG  420
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSLIG
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSLIG  420

Query  421  TCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPAE  461
            TCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPAE
Sbjct  421  TCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPAE  461

2) EC042_4789 in NC_017626


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  746 bits (2824),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 458/461 (99%), Positives = 460/461 (99%), Gaps = 0/461 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTVRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLT RVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSLIG  420
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSLIG
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSLIG  420

Query  421  TCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPAE  461
            TCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPAE
Sbjct  421  TCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPAE  461

3) O3K_21990 in NC_018658


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  746 bits (2822),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 457/461 (99%), Positives = 461/461 (100%), Gaps = 0/461 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVRFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAV+FAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSLIG  420
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSLIG
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSLIG  420

Query  421  TCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPAE  461
            TCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPAE
Sbjct  421  TCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPAE  461

4) APECO78_02470 in NC_020163


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  745 bits (2819),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 457/461 (99%), Positives = 460/461 (99%), Gaps = 0/461 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSLIG  420
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSLIG
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSLIG  420

Query  421  TCKLNDVDPESYLRHVPGVIADWPVNRVSELLPWRIALPAE  461
            TCKLNDVDPESYLRHV GVIADWPVNRVSELLPWRIALPAE
Sbjct  421  TCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPAE  461

5) EC55989_4970 in NC_011748


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  743 bits (2810),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 456/461 (99%), Positives = 460/461 (99%), Gaps = 0/461 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVRFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAV+FAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSLIG  420
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSLIG
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSLIG  420

Query  421  TCKLNDVDPESYLRHVPGVIADWPVNRVSELLPWRIALPAE  461
            TCKLNDVDPESYLRHV GVIADWPVNRVSELLPWRIALPAE
Sbjct  421  TCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPAE  461

6) O3M_21890 in NC_018650


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  743 bits (2811),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 456/461 (99%), Positives = 460/461 (99%), Gaps = 0/461 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVRFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAV+FAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSLIG  420
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSLIG
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSLIG  420

Query  421  TCKLNDVDPESYLRHVSGVIADWPVNRVSELLPWRIALPAE  461
            TCKLNDVDPESYLRHV GVIADWPVNRVSELLPWRIALPAE
Sbjct  421  TCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPAE  461

7) O3O_03390 in NC_018661


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  743 bits (2811),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 456/461 (99%), Positives = 460/461 (99%), Gaps = 0/461 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVRFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAV+FAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSLIG  420
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSLIG
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSLIG  420

Query  421  TCKLNDVDPESYLRHVSGVIADWPVNRVSELLPWRIALPAE  461
            TCKLNDVDPESYLRHV GVIADWPVNRVSELLPWRIALPAE
Sbjct  421  TCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPAE  461

8) ECSF_4189 in NC_013654


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  741 bits (2802),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 452/456 (99%), Positives = 455/456 (99%), Gaps = 0/456 (0%)

Query  17   SDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQ  76
            SDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQ
Sbjct  6    SDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQ  65

Query  77   MEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGG  136
            MEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGG
Sbjct  66   MEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGG  125

Query  137  SLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGPGLLAR  196
            SLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGPGLLAR
Sbjct  126  SLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLAR  185

Query  197  VLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEVLHGYVMTDGKLH  256
            VLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEE LHGYVMTDGKLH
Sbjct  186  VLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLH  245

Query  257  ADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTHLACFS  316
            ADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTHLACFS
Sbjct  246  ADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFS  305

Query  317  GVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEA  376
            GVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEA
Sbjct  306  GVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEA  365

Query  377  DIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSLIGTCKLN  436
            DIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSLIGTCKLN
Sbjct  366  DIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSLIGTCKLN  425

Query  437  DVDPESYLRHVLGVIADWPVNRVSELLPWRIALPAE  472
            DVDPESYLRHVLGVIADWPVNRVSELLPWRIALPAE
Sbjct  426  DVDPESYLRHVLGVIADWPVNRVSELLPWRIALPAE  461

9) ECH74115_B0118 in NC_011350


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  688 bits (2603),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 445/512 (87%), Positives = 454/512 (89%), Gaps = 51/512 (9%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLLRHSELAKAFAYALNQWPA  420
            YAIEADIRGMPAEQRLAERQRKT               K LL+          +L+ W  
Sbjct  361  YAIEADIRGMPAEQRLAERQRKT---------------KPLLK----------SLESW--  393

Query  421  LTYYANDGWVEIDNNIAENALRAVSLGRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDP  480
                                LR     + + LFFGS+HGGERGALLYSLIGTCKLNDVDP
Sbjct  394  --------------------LRE----KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDP  429

Query  481  ESYLRHVLGVIADWPVNRVSELLPWRIALPAE  512
            ESYLRHVLGVIADWPVNRVSELLPWRIALPAE
Sbjct  430  ESYLRHVLGVIADWPVNRVSELLPWRIALPAE  461

10) ECH74115_1651 in NC_011353


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  688 bits (2603),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 445/512 (87%), Positives = 454/512 (89%), Gaps = 51/512 (9%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLLRHSELAKAFAYALNQWPA  420
            YAIEADIRGMPAEQRLAERQRKT               K LL+          +L+ W  
Sbjct  361  YAIEADIRGMPAEQRLAERQRKT---------------KPLLK----------SLESW--  393

Query  421  LTYYANDGWVEIDNNIAENALRAVSLGRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDP  480
                                LR     + + LFFGS+HGGERGALLYSLIGTCKLNDVDP
Sbjct  394  --------------------LRE----KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDP  429

Query  481  ESYLRHVLGVIADWPVNRVSELLPWRIALPAE  512
            ESYLRHVLGVIADWPVNRVSELLPWRIALPAE
Sbjct  430  ESYLRHVLGVIADWPVNRVSELLPWRIALPAE  461

11) ECSP_1565 in NC_013008


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  688 bits (2603),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 445/512 (87%), Positives = 454/512 (89%), Gaps = 51/512 (9%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLLRHSELAKAFAYALNQWPA  420
            YAIEADIRGMPAEQRLAERQRKT               K LL+          +L+ W  
Sbjct  361  YAIEADIRGMPAEQRLAERQRKT---------------KPLLK----------SLESW--  393

Query  421  LTYYANDGWVEIDNNIAENALRAVSLGRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDP  480
                                LR     + + LFFGS+HGGERGALLYSLIGTCKLNDVDP
Sbjct  394  --------------------LRE----KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDP  429

Query  481  ESYLRHVLGVIADWPVNRVSELLPWRIALPAE  512
            ESYLRHVLGVIADWPVNRVSELLPWRIALPAE
Sbjct  430  ESYLRHVLGVIADWPVNRVSELLPWRIALPAE  461

12) ECSP_6108 in NC_013010


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  688 bits (2603),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 445/512 (87%), Positives = 454/512 (89%), Gaps = 51/512 (9%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLLRHSELAKAFAYALNQWPA  420
            YAIEADIRGMPAEQRLAERQRKT               K LL+          +L+ W  
Sbjct  361  YAIEADIRGMPAEQRLAERQRKT---------------KPLLK----------SLESW--  393

Query  421  LTYYANDGWVEIDNNIAENALRAVSLGRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDP  480
                                LR     + + LFFGS+HGGERGALLYSLIGTCKLNDVDP
Sbjct  394  --------------------LRE----KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDP  429

Query  481  ESYLRHVLGVIADWPVNRVSELLPWRIALPAE  512
            ESYLRHVLGVIADWPVNRVSELLPWRIALPAE
Sbjct  430  ESYLRHVLGVIADWPVNRVSELLPWRIALPAE  461

13) UMNK88_5237 in NC_017641


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  668 bits (2526),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 406/412 (99%), Positives = 411/412 (99%), Gaps = 0/412 (0%)

Query  1    MNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRD  60
            MNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRD
Sbjct  50   MNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRD  109

Query  61   EKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAP  120
            EKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAP
Sbjct  110  EKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAP  169

Query  121  SRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYSRQGVELSRSLLSGWVDACCRLLSP  180
            SRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIY+RQGVELSRSLLSGWVDACCRLLSP
Sbjct  170  SRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSP  229

Query  181  LEEALHGYVMTDGKLHADDXPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVRFAYS  240
            LEEALHGYVMTDGKLHADD PVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAV+FAYS
Sbjct  230  LEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYS  289

Query  241  PDRKGIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSAL  300
            PDRK+IHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSAL
Sbjct  290  PDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSAL  349

Query  301  TEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGG  360
            TEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGG
Sbjct  350  TEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGG  409

Query  361  ERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPAE  412
            ERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPAE
Sbjct  410  ERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPAE  461

14) ETEC_3217 in NC_017633


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  639 bits (2415),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 397/401 (99%), Positives = 400/401 (99%), Gaps = 0/401 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

15) ETEC_p666_0230 in NC_017722


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  639 bits (2415),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 397/401 (99%), Positives = 400/401 (99%), Gaps = 0/401 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

16) ECH74115_0344 in NC_011353


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  639 bits (2415),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

17) ECH74115_1183 in NC_011353


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  639 bits (2415),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

18) ECH74115_1308 in NC_011353


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  639 bits (2415),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

19) ECH74115_1812 in NC_011353


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  639 bits (2415),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

20) ECH74115_2224 in NC_011353


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  639 bits (2415),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

21) ECH74115_2841 in NC_011353


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  639 bits (2415),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

22) ECH74115_4292 in NC_011353


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  639 bits (2415),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

23) ECH74115_5043 in NC_011353


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  639 bits (2416),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  106 bits (387),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 59/66 (90%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGAPLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGA LYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

24) Z0367 in NC_002655


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  639 bits (2415),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

25) Z1929 in NC_002655


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  639 bits (2415),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

26) Z2130 in NC_002655


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  639 bits (2415),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

27) Z6016 in NC_002655


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  639 bits (2415),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

28) Z3156 in NC_002655


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  639 bits (2415),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

29) Z4337 in NC_002655


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  639 bits (2415),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

30) Z5098 in NC_002655


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  639 bits (2415),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

31) ECs0330 in NC_002695


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  639 bits (2415),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

32) ECs1104 in NC_002695


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  639 bits (2415),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

33) ECs1307 in NC_002695


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  639 bits (2415),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

34) ECs1660 in NC_002695


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  639 bits (2415),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

35) ECs1818 in NC_002695


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  639 bits (2415),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

36) ECs2224 in NC_002695


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  639 bits (2415),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

37) ECs2791 in NC_002695


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  639 bits (2415),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

38) ECs4547 in NC_002695


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  639 bits (2416),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  106 bits (387),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 59/66 (90%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGAPLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGA LYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

39) ECSP_0339 in NC_013008


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  639 bits (2415),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

40) ECSP_1118 in NC_013008


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  639 bits (2415),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

41) ECSP_1238 in NC_013008


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  639 bits (2415),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

42) ECSP_1707 in NC_013008


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  639 bits (2415),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

43) ECSP_2086 in NC_013008


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  639 bits (2415),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

44) ECSP_2661 in NC_013008


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  639 bits (2415),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

45) ECSP_3961 in NC_013008


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  639 bits (2415),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

46) ECSP_4663 in NC_013008


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  639 bits (2416),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  106 bits (387),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 59/66 (90%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGAPLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGA LYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

47) CDCO157_0324 in NC_017906


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  639 bits (2415),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

48) CDCO157_1070 in NC_017906


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  639 bits (2415),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

49) CDCO157_1252B in NC_017906


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  639 bits (2415),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

50) CDCO157_1592 in NC_017906


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  639 bits (2415),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

51) CDCO157_1744 in NC_017906


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  639 bits (2415),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

52) CDCO157_2065 in NC_017906


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  639 bits (2415),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

53) CDCO157_2574 in NC_017906


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  639 bits (2415),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

54) CDCO157_3611 in NC_017906


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  639 bits (2415),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

55) CDCO157_4282 in NC_017906


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  639 bits (2416),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  106 bits (387),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 59/66 (90%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGAPLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGA LYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

56) SDY_4479 in NC_007606


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  638 bits (2411),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 400/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNRVREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNR REIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLMPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVL+PGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  106 bits (387),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 59/66 (90%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVPGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHV GVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

57) APECO1_O1CoBM93 in NC_009837


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  637 bits (2408),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 394/401 (99%), Positives = 399/401 (99%), Gaps = 0/401 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNQLQKESDTLTGRVYDPAVQRPLRQTRIRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLN+LQKESDTLTGRVYDPAVQRPLRQTR RKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLMPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVL+PGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  111 bits (404),  Expect = 9e-26, Method: Compositional matrix adjust.
 Identities = 61/66 (93%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

58) EcE24377A_D0019 in NC_009788


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  637 bits (2407),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 396/401 (99%), Positives = 400/401 (99%), Gaps = 0/401 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNWEREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSN+EREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (373),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

59) EcE24377A_E0038 in NC_009790


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  637 bits (2407),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 396/401 (99%), Positives = 400/401 (99%), Gaps = 0/401 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNWEREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSN+EREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (373),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

60) EcE24377A_E0068 in NC_009790


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  637 bits (2407),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 396/401 (99%), Positives = 400/401 (99%), Gaps = 0/401 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNWEREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSN+EREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (373),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

61) EcE24377A_0815 in NC_009801


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  637 bits (2407),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 396/401 (99%), Positives = 400/401 (99%), Gaps = 0/401 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNWEREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSN+EREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (373),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

62) EcE24377A_1407 in NC_009801


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  637 bits (2407),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 396/401 (99%), Positives = 400/401 (99%), Gaps = 0/401 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNWEREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSN+EREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (373),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

63) EcE24377A_1760 in NC_009801


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  637 bits (2407),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 396/401 (99%), Positives = 400/401 (99%), Gaps = 0/401 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNWEREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSN+EREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (373),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

64) EcE24377A_3343 in NC_009801


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  637 bits (2407),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 396/401 (99%), Positives = 400/401 (99%), Gaps = 0/401 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNWEREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSN+EREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (373),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

65) EcE24377A_3384 in NC_009801


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  637 bits (2407),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 396/401 (99%), Positives = 400/401 (99%), Gaps = 0/401 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNWEREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSN+EREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (373),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

66) EcE24377A_4860 in NC_009801


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  637 bits (2407),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 396/401 (99%), Positives = 400/401 (99%), Gaps = 0/401 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNWEREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSN+EREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (373),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

67) ECO111_1217 in NC_013364


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  637 bits (2409),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  106 bits (385),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 59/66 (90%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHCGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+H GERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

68) Z1131 in NC_002655


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  637 bits (2408),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 400/418 (96%), Positives = 406/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPQYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTP Y QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

69) Z1570 in NC_002655


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  637 bits (2408),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 400/418 (96%), Positives = 406/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPQYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTP Y QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

70) ECO103_3808 in NC_013353


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  636 bits (2402),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 400/418 (96%), Positives = 407/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRPRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTR RKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVRFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAV+FAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  105 bits (383),  Expect = 4e-24, Method: Compositional matrix adjust.
 Identities = 58/66 (88%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGALVYSLIGTCKLNDVDPESYLRHVPGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGAL+YSLIGTCKLNDVDPESYLRHV GVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

71) ECO111_p3-06 in NC_013366


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  636 bits (2405),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 406/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGRITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNG ITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

72) ECO111_p3-81 in NC_013366


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  636 bits (2405),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 401/418 (96%), Positives = 406/418 (98%), Gaps = 3/418 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGRITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360
            LACFSGVLQADAYAGFNELYRNG ITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  447  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  IALPAE  512
            IALPAE
Sbjct  456  IALPAE  461

73) ECO26_2896 in NC_013361


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  632 bits (2387),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 394/401 (99%), Positives = 397/401 (99%), Gaps = 2/401 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNK--KTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  298
            DGKLHADDTPVQVLLPGNK  KTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  299  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  358
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  359  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  399
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  445  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  504
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  505  IALPAE  510
            IALPAE
Sbjct  456  IALPAE  461

74) ECO26_1266 in NC_013361


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  631 bits (2383),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 398/418 (96%), Positives = 404/418 (97%), Gaps = 5/418 (1%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRPRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTR RKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNK--KTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  298
            DGKLHADDTPVQVLLPGNK  KTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  299  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  358
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  359  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  413
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  445  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  504
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  505  IALPAE  510
            IALPAE
Sbjct  456  IALPAE  461

75) ECO26_p1-85 in NC_013369


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  631 bits (2383),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 398/418 (96%), Positives = 404/418 (97%), Gaps = 5/418 (1%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRPRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTR RKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNK--KTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  298
            DGKLHADDTPVQVLLPGNK  KTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  299  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  358
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  359  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  413
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  445  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  504
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  505  IALPAE  510
            IALPAE
Sbjct  456  IALPAE  461

76) UMNK88_1188 in NC_017641


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  631 bits (2383),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 398/418 (96%), Positives = 404/418 (97%), Gaps = 5/418 (1%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRPRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTR RKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNK--KTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  298
            DGKLHADDTPVQVLLPGNK  KTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  299  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  358
            LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  359  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  413
            YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  109 bits (398),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  445  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  504
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  505  IALPAE  510
            IALPAE
Sbjct  456  IALPAE  461

77) ECED1_0320 in NC_011745


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  615 bits (2325),  Expect = 1e-177, Method: Compositional matrix adjust.
 Identities = 379/401 (95%), Positives = 392/401 (98%), Gaps = 0/401 (0%)

Query  1    MNDISSDDILLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDI+LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRPRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTR RKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401

78) ECNA114_4532 in NC_017644


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  612 bits (2312),  Expect = 1e-176, Method: Compositional matrix adjust.
 Identities = 381/401 (96%), Positives = 391/401 (98%), Gaps = 0/401 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELSRSLLSGWVDACCRQLSPLEEALHGYVLT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVELSRSLLSGWVDACCR LSPLEEALHGYV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTCVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+ VR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

79) O3O_26262 in NC_018662


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  612 bits (2313),  Expect = 1e-176, Method: Compositional matrix adjust.
 Identities = 381/401 (96%), Positives = 390/401 (98%), Gaps = 0/401 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRPRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTR RKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVLT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHVDDTPVPVLLPGNKKTKTGRLWAYVRDDCNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLH DDTPV VLLPGNKKTKTGRLWAYVR+D NAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (373),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

80) ECABU_c33140 in NC_017631


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  611 bits (2309),  Expect = 3e-176, Method: Compositional matrix adjust.
 Identities = 380/401 (95%), Positives = 390/401 (98%), Gaps = 0/401 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDIAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGED AEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELSRSLLSGWVDACCRQLSPLEEALHGYVLT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVELSRSLLSGWVDACCR LSPLEEALHGYV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTCVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+ VR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

81) c3645 in NC_004431


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  611 bits (2309),  Expect = 3e-176, Method: Compositional matrix adjust.
 Identities = 380/401 (95%), Positives = 390/401 (98%), Gaps = 0/401 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDIAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGED AEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELSRSLLSGWVDACCRQLSPLEEALHGYVLT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVELSRSLLSGWVDACCR LSPLEEALHGYV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTCVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+ VR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

82) i14_3338 in NC_017652


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  611 bits (2309),  Expect = 3e-176, Method: Compositional matrix adjust.
 Identities = 380/401 (95%), Positives = 390/401 (98%), Gaps = 0/401 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDIAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGED AEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELSRSLLSGWVDACCRQLSPLEEALHGYVLT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVELSRSLLSGWVDACCR LSPLEEALHGYV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTCVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+ VR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

83) i02_3338 in NC_017651


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  611 bits (2309),  Expect = 3e-176, Method: Compositional matrix adjust.
 Identities = 380/401 (95%), Positives = 390/401 (98%), Gaps = 0/401 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDIAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGED AEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELSRSLLSGWVDACCRQLSPLEEALHGYVLT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVELSRSLLSGWVDACCR LSPLEEALHGYV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTCVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+ VR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

84) ECUMN_3391 in NC_011751


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  609 bits (2299),  Expect = 1e-175, Method: Compositional matrix adjust.
 Identities = 384/418 (92%), Positives = 397/418 (95%), Gaps = 3/418 (0%)

Query  13   MNDISSDDIFLLKQRLAEQEVLIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  72
            MNDISSDDIFLLKQRLAEQE LIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  73   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  132
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  133  PNCGGSLSYLGEDIAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  192
            PNCGGSLSYLGED AEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  193  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELSRSLLSGWVDACCRQLSPLEEALHGYVLT  252
            GLLARVLTSKYAEHTPLY QSEIYGRQGVELSRSLLSGWVDACCR LSPLEEALHGYV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  253  DGKLHADDTPVPVLLPGNKKTKTGRLWTCVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  312
            DGKLHADDTPV VLLPGNKKTKTGRLW+ VR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  313  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  372
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  373  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  427
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score =  103 bits (373),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  459  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  518
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  519  VALPTE  524
            +ALP+E
Sbjct  456  IALPAE  461

85) SbBS512_E1606 in NC_010658


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  581 bits (2196),  Expect = 2e-167, Method: Compositional matrix adjust.
 Identities = 363/418 (87%), Positives = 390/418 (94%), Gaps = 3/418 (0%)

Query  1    MSGSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M++  +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSVFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRS FRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL---SRHSELAKAFAYAL  415
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL   S H+    A+ Y+L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418

86) SbBS512_E0510 in NC_010658


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  579 bits (2187),  Expect = 1e-166, Method: Compositional matrix adjust.
 Identities = 358/401 (90%), Positives = 381/401 (96%), Gaps = 0/401 (0%)

Query  1    MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M+   +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSVFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRS FRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

87) SbBS512_E0707 in NC_010658


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  579 bits (2187),  Expect = 1e-166, Method: Compositional matrix adjust.
 Identities = 358/401 (90%), Positives = 381/401 (96%), Gaps = 0/401 (0%)

Query  1    MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M+   +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSVFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRS FRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

88) SbBS512_E0712 in NC_010658


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  579 bits (2187),  Expect = 1e-166, Method: Compositional matrix adjust.
 Identities = 358/401 (90%), Positives = 381/401 (96%), Gaps = 0/401 (0%)

Query  1    MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M+   +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSVFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRS FRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

89) SbBS512_E1001 in NC_010658


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  579 bits (2187),  Expect = 1e-166, Method: Compositional matrix adjust.
 Identities = 358/401 (90%), Positives = 381/401 (96%), Gaps = 0/401 (0%)

Query  1    MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M+   +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSVFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRS FRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

90) SbBS512_E1006 in NC_010658


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  579 bits (2187),  Expect = 1e-166, Method: Compositional matrix adjust.
 Identities = 358/401 (90%), Positives = 381/401 (96%), Gaps = 0/401 (0%)

Query  1    MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M+   +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSVFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRS FRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

91) SbBS512_E1113 in NC_010658


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  579 bits (2187),  Expect = 1e-166, Method: Compositional matrix adjust.
 Identities = 358/401 (90%), Positives = 381/401 (96%), Gaps = 0/401 (0%)

Query  1    MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M+   +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSVFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRS FRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

92) SbBS512_E1117 in NC_010658


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  579 bits (2187),  Expect = 1e-166, Method: Compositional matrix adjust.
 Identities = 358/401 (90%), Positives = 381/401 (96%), Gaps = 0/401 (0%)

Query  1    MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M+   +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSVFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRS FRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

93) SbBS512_E1523 in NC_010658


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  579 bits (2187),  Expect = 1e-166, Method: Compositional matrix adjust.
 Identities = 358/401 (90%), Positives = 382/401 (96%), Gaps = 0/401 (0%)

Query  1    MSGSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M++  +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSVFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRS FRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

94) SbBS512_E1584 in NC_010658


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  579 bits (2187),  Expect = 1e-166, Method: Compositional matrix adjust.
 Identities = 358/401 (90%), Positives = 381/401 (96%), Gaps = 0/401 (0%)

Query  1    MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M+   +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSVFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRS FRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

95) SbBS512_E1640 in NC_010658


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  579 bits (2187),  Expect = 1e-166, Method: Compositional matrix adjust.
 Identities = 358/401 (90%), Positives = 381/401 (96%), Gaps = 0/401 (0%)

Query  1    MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M+   +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSVFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRS FRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

96) SbBS512_E1644 in NC_010658


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  579 bits (2187),  Expect = 1e-166, Method: Compositional matrix adjust.
 Identities = 358/401 (90%), Positives = 382/401 (96%), Gaps = 0/401 (0%)

Query  1    MSGSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M++  +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSVFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRS FRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

97) SbBS512_E1653 in NC_010658


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  579 bits (2187),  Expect = 1e-166, Method: Compositional matrix adjust.
 Identities = 358/401 (90%), Positives = 381/401 (96%), Gaps = 0/401 (0%)

Query  1    MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M+   +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSVFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRS FRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

98) SbBS512_E1866 in NC_010658


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  579 bits (2187),  Expect = 1e-166, Method: Compositional matrix adjust.
 Identities = 358/401 (90%), Positives = 381/401 (96%), Gaps = 0/401 (0%)

Query  1    MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M+   +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSVFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRS FRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

99) SbBS512_E2109 in NC_010658


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  579 bits (2187),  Expect = 1e-166, Method: Compositional matrix adjust.
 Identities = 358/401 (90%), Positives = 381/401 (96%), Gaps = 0/401 (0%)

Query  1    MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M+   +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSVFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRS FRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

100) SbBS512_E2364 in NC_010658


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  579 bits (2187),  Expect = 1e-166, Method: Compositional matrix adjust.
 Identities = 358/401 (90%), Positives = 381/401 (96%), Gaps = 0/401 (0%)

Query  1    MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M+   +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSVFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRS FRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

101) SbBS512_E2413 in NC_010658


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  579 bits (2187),  Expect = 1e-166, Method: Compositional matrix adjust.
 Identities = 358/401 (90%), Positives = 381/401 (96%), Gaps = 0/401 (0%)

Query  1    MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M+   +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSVFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRS FRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

102) SbBS512_E2601 in NC_010658


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  579 bits (2187),  Expect = 1e-166, Method: Compositional matrix adjust.
 Identities = 358/401 (90%), Positives = 381/401 (96%), Gaps = 0/401 (0%)

Query  1    MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M+   +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSVFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRS FRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

103) SbBS512_E2618 in NC_010658


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  579 bits (2187),  Expect = 1e-166, Method: Compositional matrix adjust.
 Identities = 358/401 (90%), Positives = 381/401 (96%), Gaps = 0/401 (0%)

Query  1    MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M+   +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSVFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRS FRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

104) SbBS512_E2636 in NC_010658


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  579 bits (2187),  Expect = 1e-166, Method: Compositional matrix adjust.
 Identities = 358/401 (90%), Positives = 381/401 (96%), Gaps = 0/401 (0%)

Query  1    MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M+   +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSVFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRS FRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

105) SbBS512_E2711 in NC_010658


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  579 bits (2187),  Expect = 1e-166, Method: Compositional matrix adjust.
 Identities = 358/401 (90%), Positives = 381/401 (96%), Gaps = 0/401 (0%)

Query  1    MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M+   +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSVFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRS FRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

106) SbBS512_E2947 in NC_010658


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  579 bits (2187),  Expect = 1e-166, Method: Compositional matrix adjust.
 Identities = 358/401 (90%), Positives = 381/401 (96%), Gaps = 0/401 (0%)

Query  1    MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M+   +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSVFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRS FRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

107) SbBS512_E2964 in NC_010658


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  579 bits (2187),  Expect = 1e-166, Method: Compositional matrix adjust.
 Identities = 358/401 (90%), Positives = 381/401 (96%), Gaps = 0/401 (0%)

Query  1    MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M+   +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSVFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRS FRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

108) SbBS512_E3096 in NC_010658


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  579 bits (2187),  Expect = 1e-166, Method: Compositional matrix adjust.
 Identities = 358/401 (90%), Positives = 381/401 (96%), Gaps = 0/401 (0%)

Query  1    MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M+   +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSVFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRS FRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

109) SbBS512_E3413 in NC_010658


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  579 bits (2187),  Expect = 1e-166, Method: Compositional matrix adjust.
 Identities = 358/401 (90%), Positives = 381/401 (96%), Gaps = 0/401 (0%)

Query  1    MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M+   +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSVFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRS FRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

110) SbBS512_E3448 in NC_010658


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  579 bits (2187),  Expect = 1e-166, Method: Compositional matrix adjust.
 Identities = 358/401 (90%), Positives = 381/401 (96%), Gaps = 0/401 (0%)

Query  1    MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M+   +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSVFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRS FRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

111) SbBS512_E3675 in NC_010658


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  579 bits (2187),  Expect = 1e-166, Method: Compositional matrix adjust.
 Identities = 358/401 (90%), Positives = 381/401 (96%), Gaps = 0/401 (0%)

Query  1    MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M+   +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSVFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRS FRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

112) SbBS512_E3708 in NC_010658


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  579 bits (2187),  Expect = 1e-166, Method: Compositional matrix adjust.
 Identities = 358/401 (90%), Positives = 382/401 (96%), Gaps = 0/401 (0%)

Query  1    MSGSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M++  +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSVFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRS FRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

113) SbBS512_E4197 in NC_010658


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  579 bits (2187),  Expect = 1e-166, Method: Compositional matrix adjust.
 Identities = 358/401 (90%), Positives = 382/401 (96%), Gaps = 0/401 (0%)

Query  1    MSGSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M++  +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSVFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRS FRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

114) SbBS512_E4625 in NC_010658


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  579 bits (2187),  Expect = 1e-166, Method: Compositional matrix adjust.
 Identities = 358/401 (90%), Positives = 381/401 (96%), Gaps = 0/401 (0%)

Query  1    MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M+   +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSVFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRS FRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

115) SbBS512_A0017 in NC_010660


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  579 bits (2187),  Expect = 1e-166, Method: Compositional matrix adjust.
 Identities = 358/401 (90%), Positives = 381/401 (96%), Gaps = 0/401 (0%)

Query  1    MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M+   +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSVFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRS FRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

116) SbBS512_A0193 in NC_010660


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  579 bits (2187),  Expect = 1e-166, Method: Compositional matrix adjust.
 Identities = 358/401 (90%), Positives = 381/401 (96%), Gaps = 0/401 (0%)

Query  1    MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M+   +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSVFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRS FRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

117) SbBS512_A0228 in NC_010660


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  579 bits (2187),  Expect = 1e-166, Method: Compositional matrix adjust.
 Identities = 358/401 (90%), Positives = 382/401 (96%), Gaps = 0/401 (0%)

Query  1    MSGSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M++  +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSVFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRS FRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

118) SbBS512_E4660 in NC_010658


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  578 bits (2183),  Expect = 2e-166, Method: Compositional matrix adjust.
 Identities = 356/401 (89%), Positives = 379/401 (95%), Gaps = 0/401 (0%)

Query  1    MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M+   +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSVFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRS FRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYVEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKY EHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADVYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQAD YAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

119) G2583_pO550105 in NC_013942


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  578 bits (2181),  Expect = 3e-166, Method: Compositional matrix adjust.
 Identities = 356/401 (89%), Positives = 381/401 (96%), Gaps = 0/401 (0%)

Query  1    MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M+   +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPTVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DP+VQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELIRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLEL+RSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQPH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAVWFAYSPDRK+IHPQ H
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

120) SbBS512_E4652 in NC_010658


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  577 bits (2179),  Expect = 4e-166, Method: Compositional matrix adjust.
 Identities = 357/401 (90%), Positives = 380/401 (95%), Gaps = 0/401 (0%)

Query  1    MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M+   +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSVFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRS FRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPQYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTP Y QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/65 (80%), Positives = 62/65 (96%), Gaps = 0/65 (0%)

Query  448  RKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWRV  507
            + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR+
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRI  456

Query  508  ALPTE  512
            ALP+E
Sbjct  457  ALPAE  461

121) SbBS512_A0146 in NC_010660


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  577 bits (2179),  Expect = 4e-166, Method: Compositional matrix adjust.
 Identities = 357/401 (90%), Positives = 380/401 (95%), Gaps = 0/401 (0%)

Query  1    MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M+   +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSVFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRS FRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPQYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTP Y QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/65 (80%), Positives = 62/65 (96%), Gaps = 0/65 (0%)

Query  448  RKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWRV  507
            + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR+
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRI  456

Query  508  ALPTE  512
            ALP+E
Sbjct  457  ALPAE  461

122) P12B_c1722 in NC_017663


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  576 bits (2175),  Expect = 1e-165, Method: Compositional matrix adjust.
 Identities = 353/401 (89%), Positives = 377/401 (95%), Gaps = 0/401 (0%)

Query  1    MNDTSSDDILLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MND SSDDI+LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNLLQQESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPTEPCC  120
            RRIAQMEADLN LQ+ESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLP+ PCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSAFRVIRTVREKHACRRCDRIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRSAFRVIRTVREKHAC +CD IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYARQGVVLSRSVLSGWVDACCRLLAPLDEALQHYVLT  240
            GLLARVLTSKYAEHTPLY QSEIY+RQGV LSRS+LSGWVDACCRLL+PL+EAL+ YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGHIKEAACWAHARRKIHDVHVRTPSVLTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G I EAACWAHARRKIHDVHVR PS LTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIESEIRGKRAEERQAVRHQKVLPLLASLEGWLREKQKTL  401
            YAIE++IRG  AE+R A R++K  PLL SLE+WLREK KTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score = 98.3 bits (354),  Expect = 8e-22, Method: Compositional matrix adjust.
 Identities = 50/60 (84%), Positives = 57/60 (95%), Gaps = 0/60 (0%)

Query  452  LFFGSDHGGERGASLYSLIGTCKLNGVDPERYLHHVLDVIADWPVNRVGALLPWRVTLPA  511
            LFFGS+HGGERGA LYSLIGTCKLN+VDPE YL+HVL+VIADWPVNRV+ LLPWR++LPA
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

123) KPHS_22580 in NC_016845


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  576 bits (2176),  Expect = 7e-166, Method: Compositional matrix adjust.
 Identities = 354/401 (89%), Positives = 383/401 (96%), Gaps = 0/401 (0%)

Query  1    MNSLLPDDIDELKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MN + +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAKMEADLKQLQKESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIA+MEADL++LQKESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGALSYLGEDAAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGG+LSYLGED+AEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLSSKYAEHTPLYRQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEGALQDYVLT  240
            GLLARVL+SKYAEHTPLY QSEIYGRQGVELSRSLLSGWVDACCRLLSPLE AL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSELAPAVWFAYSPDRKGIHPQSH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS LAPAVWFAYSPDRK+IHPQ+H
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRNGQITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYRNG ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMPAKRRLAERQQKAKPRLKSLESWLREKVKTL  401
            YAIEA+IRGMPA +RLAERQ+K+KP LKSLESWLREK+KTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  106 bits (385),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 54/65 (84%), Positives = 63/65 (97%), Gaps = 0/65 (0%)

Query  448  RKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRHVLDVIADWPINRVSELLPWRV  507
            + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLRHVL+VIADWP+NRVSELLPWR+
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRI  456

Query  508  ALPTE  512
            ALP+E
Sbjct  457  ALPAE  461

124) ECO55CA74_26169 in NC_017657


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  576 bits (2176),  Expect = 8e-166, Method: Compositional matrix adjust.
 Identities = 355/401 (89%), Positives = 380/401 (95%), Gaps = 0/401 (0%)

Query  1    MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M+   +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPTVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DP+VQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELIRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLEL+RSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLVPAVWFAYSPDRKGIHPQPH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+L PAVWFAYSPDRK+IHPQ H
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (374),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  447  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  506
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  507  VALPTE  512
            +ALP+E
Sbjct  456  IALPAE  461

125) APECO1_O1R214 in NC_009838


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  575 bits (2173),  Expect = 1e-165, Method: Compositional matrix adjust.
 Identities = 353/401 (89%), Positives = 378/401 (95%), Gaps = 0/401 (0%)

Query  1    MNDTSSDDILLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MND SSDDI+LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNLLQQESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPTEPCC  120
            RRIAQMEADLN LQ+ESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLP+ PCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSAFRVIRTVREKHACRRCDRIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRSAFRVIRTVREKHAC +CD IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYARQGVVLSRSVLSGWVDACCRLLAPLDEALQHYVLT  240
            GLLARVLTSKYAEHTPLY QSEIY+RQGV LSRS+LSGWVDACCRLL+PL+EAL+ YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGHIKEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G I EAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIESELRGKRAEERQAVRHQKVLPLLASLEGWLREKQKTL  401
            YAIE+++RG  AE+R A R++K  PLL SLE+WLREK KTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score = 98.3 bits (354),  Expect = 7e-22, Method: Compositional matrix adjust.
 Identities = 50/60 (84%), Positives = 57/60 (95%), Gaps = 0/60 (0%)

Query  452  LFFGSDHGGERGASLYSLIGTCKLNGVDPERYLHHVLDVIADWPVNRVGALLPWRVTLPA  511
            LFFGS+HGGERGA LYSLIGTCKLN+VDPE YL+HVL+VIADWPVNRV+ LLPWR++LPA
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

126) P12B_c1021 in NC_017663


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  575 bits (2172),  Expect = 1e-165, Method: Compositional matrix adjust.
 Identities = 353/401 (89%), Positives = 377/401 (95%), Gaps = 0/401 (0%)

Query  1    MNDTSSDDILLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MND SSDDI+LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNLLQQESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPTEPCC  120
            RRIAQMEADLN LQ+ESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLP+ PCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSAFRVIRTVREKHACRRCDRIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRSAFRVIRTVREKHAC +CD IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYARQGVVLSRSVLSGWVDACCRLLAPLDEALQHYVLT  240
            GLLARVLTSKYAEHTPLY QSEIY+RQGV LSRS+LSGWVDACCRLL+PL+EAL+ YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGHIKEAACWAHARRKIHDVHVRTPSVLTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G I EAACWAHARRKIHDVHVR PS LTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIESEIRGKRAEERQAVRHQKVLPLLASLEGWLREKQKTL  401
            YAIE++IRG  AE+R A R++K  PLL SLE+WLREK KTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score = 97.8 bits (352),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 50/60 (84%), Positives = 56/60 (94%), Gaps = 0/60 (0%)

Query  452  LFFGSDHGGERGASLYSLIGTCKLNGVDPERYLHHVLPVIADWPVNRVGALLPWRVTLPA  511
            LFFGS+HGGERGA LYSLIGTCKLN+VDPE YL+HVL VIADWPVNRV+ LLPWR++LPA
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

127) P12B_c1045 in NC_017663


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  575 bits (2171),  Expect = 2e-165, Method: Compositional matrix adjust.
 Identities = 353/401 (89%), Positives = 377/401 (95%), Gaps = 0/401 (0%)

Query  1    MNDTSSDDILLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MND SSDDI+LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNLLQQESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPTEPCC  120
            RRIAQMEADLN LQ+ESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLP+ PCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSAFRVIRTVREKHACRRCDRIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRSAFRVIRTVREKHAC +CD IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYARQGVVLSRSVLSGWVDACCRLLAPLDEALQHYVLT  240
            GLLARVLTSKYAEHTPLY QSEIY+RQGV LSRS+LSGWVDACCRLL+PL+EAL+ YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGHIKEAACWAHARRKIHDVHVRTPSVLTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G I EAACWAHARRKIHDVHVR PS LTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIESEIRGKRAEERQAVRHQKVLPLLASLEGWLREKQKTL  401
            YAIE++IRG  AE+R A R++K  PLL SLE+WLREK KTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score = 95.7 bits (344),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 49/60 (82%), Positives = 56/60 (94%), Gaps = 0/60 (0%)

Query  452  LFFGSDHGGERGASLYSLIGTCKLNGVDPERYLHYVLDVIADWPVNRVGALLPWRVTLPA  511
            LFFGS+HGGERGA LYSLIGTCKLN+VDPE YL+ VL+VIADWPVNRV+ LLPWR++LPA
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

128) P12B_c1606 in NC_017663


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  575 bits (2171),  Expect = 2e-165, Method: Compositional matrix adjust.
 Identities = 353/401 (89%), Positives = 377/401 (95%), Gaps = 0/401 (0%)

Query  1    MNDTSSDDILLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MND SSDDI+LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNLLQQESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPTEPCC  120
            RRIAQMEADLN LQ+ESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLP+ PCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSAFRVIRTVREKHACRRCDRIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRSAFRVIRTVREKHAC +CD IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYARQGVVLSRSVLSGWVDACCRLLAPLDEALQHYVLT  240
            GLLARVLTSKYAEHTPLY QSEIY+RQGV LSRS+LSGWVDACCRLL+PL+EAL+ YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGHIKEAACWAHARRKIHDVHVRTPSVLTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G I EAACWAHARRKIHDVHVR PS LTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIESEIRGKRAEERQAVRHQKVLPLLASLEGWLREKQKTL  401
            YAIE++IRG  AE+R A R++K  PLL SLE+WLREK KTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score = 95.7 bits (344),  Expect = 5e-21, Method: Compositional matrix adjust.
 Identities = 49/60 (82%), Positives = 56/60 (94%), Gaps = 0/60 (0%)

Query  452  LFFGSDHGGERGASLYSLIGTCKLNGVDPERYLHYVLDVIADWPVNRVGALLPWRVTLPA  511
            LFFGS+HGGERGA LYSLIGTCKLN+VDPE YL+ VL+VIADWPVNRV+ LLPWR++LPA
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

129) ECO26_0875 in NC_013361


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  574 bits (2169),  Expect = 3e-165, Method: Compositional matrix adjust.
 Identities = 358/401 (90%), Positives = 381/401 (96%), Gaps = 0/401 (0%)

Query  1    MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M+   +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVLFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAV FAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (375),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/65 (80%), Positives = 62/65 (96%), Gaps = 0/65 (0%)

Query  448  RKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWRV  507
            + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR+
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRI  456

Query  508  ALPTE  512
            ALP+E
Sbjct  457  ALPAE  461

130) ECO26_2614 in NC_013361


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  574 bits (2169),  Expect = 3e-165, Method: Compositional matrix adjust.
 Identities = 358/401 (90%), Positives = 381/401 (96%), Gaps = 0/401 (0%)

Query  1    MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M+   +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVLFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAV FAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (375),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/65 (80%), Positives = 62/65 (96%), Gaps = 0/65 (0%)

Query  448  RKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWRV  507
            + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR+
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRI  456

Query  508  ALPTE  512
            ALP+E
Sbjct  457  ALPAE  461

131) ECO26_5482 in NC_013361


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  574 bits (2169),  Expect = 3e-165, Method: Compositional matrix adjust.
 Identities = 358/401 (90%), Positives = 381/401 (96%), Gaps = 0/401 (0%)

Query  1    MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M+   +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVLFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAV FAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (375),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/65 (80%), Positives = 62/65 (96%), Gaps = 0/65 (0%)

Query  448  RKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWRV  507
            + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR+
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRI  456

Query  508  ALPTE  512
            ALP+E
Sbjct  457  ALPAE  461

132) EC55989_2248 in NC_011748


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  573 bits (2162),  Expect = 9e-165, Method: Compositional matrix adjust.
 Identities = 350/401 (88%), Positives = 376/401 (94%), Gaps = 0/401 (0%)

Query  1    MNDTSSDDILLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MND SSDDI+LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNLLQQESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPTEPCC  120
            RRIAQMEADLN LQ+ESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLP+ PCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSAFRVIRTVREKHACRRCDRIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRSAFRVIRTVREKHAC +CD IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHIPLYRQSEIYARQGVVLSRSVLSGWVDACCRLLAPLDEALQHYVLT  240
            GLLARVLTSKYAEH PLY QSEIY+RQGV LSRS+LSGWVDACCRLL+PL+EAL+ YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDMPVPVLLPGNKKTKTGRLWTYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADD PV VLLPGNKKTKTGRLW+YVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGHIKEATCWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G I EA+CWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIESELRGKRAEERQAVRHQKVLPLLASLEGWLREKQKTL  401
            YAIE+++RG  AE+R A R++K  PLL SLE+WLREK KTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score = 98.3 bits (354),  Expect = 8e-22, Method: Compositional matrix adjust.
 Identities = 50/60 (84%), Positives = 57/60 (95%), Gaps = 0/60 (0%)

Query  452  LFFGSDHGGERGASLYSLIGTCKLNGVDPERYLHHVLDVIADWPVNRVGALLPWRVTLPA  511
            LFFGS+HGGERGA LYSLIGTCKLN+VDPE YL+HVL+VIADWPVNRV+ LLPWR++LPA
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

133) ECS88_2087 in NC_011742


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  573 bits (2163),  Expect = 9e-165, Method: Compositional matrix adjust.
 Identities = 350/401 (88%), Positives = 376/401 (94%), Gaps = 0/401 (0%)

Query  12   MNDTSSDDILLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  71
            MND SSDDI+LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  72   RRIAQMEADLNLLQQESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPTEPCC  131
            RRIAQMEADLN LQ+ESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLP+ PCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  132  PECGGSLSYLGEDAAEQLELMRSAFRVIRTVREKHACRRCDRIVQAPAPSRPIERGIAGP  191
            P+CGGSLSYLGED+AEQLELMRSAFRVIRTVREKHAC +CD IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  192  GLLARVLTSKYAEHIPLYRQSEIYARQGVVLSRSVLSGWVDACCRLLAPLDEALQHYVLT  251
            GLLARVLTSKYAEH PLY QSEIY+RQGV LSRS+LSGWVDACCRLL+PL+EAL+ YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  252  DGKLHADDMPVPVLLPGNKKTKTGRLWTYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  311
            DGKLHADD PV VLLPGNKKTKTGRLW+YVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  312  LAGFSGVLQADAYAGFNELYRDGHIKEATCWAHARRKIHDVHVRTPSALTEEALKRIGEL  371
            LA FSGVLQADAYAGFNELYR+G I EA+CWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  372  YAIESELRGKRAEERQAVRHQKVLPLLASLEGWLREKQKTL  412
            YAIE+++RG  AE+R A R++K  PLL SLE+WLREK KTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score = 98.3 bits (354),  Expect = 8e-22, Method: Compositional matrix adjust.
 Identities = 50/60 (84%), Positives = 57/60 (95%), Gaps = 0/60 (0%)

Query  463  LFFGSDHGGERGASLYSLIGTCKLNGVDPERYLHHVLDVIADWPVNRVGALLPWRVTLPA  522
            LFFGS+HGGERGA LYSLIGTCKLN+VDPE YL+HVL+VIADWPVNRV+ LLPWR++LPA
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

134) ECO26_2903 in NC_013361


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  572 bits (2158),  Expect = 2e-164, Method: Compositional matrix adjust.
 Identities = 357/401 (90%), Positives = 380/401 (95%), Gaps = 0/401 (0%)

Query  1    MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M+   +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPAVQRLLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DPAVQR LRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVLFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAV FAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (375),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/65 (80%), Positives = 62/65 (96%), Gaps = 0/65 (0%)

Query  448  RKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWRV  507
            + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR+
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRI  456

Query  508  ALPTE  512
            ALP+E
Sbjct  457  ALPAE  461

135) ECO26_3155 in NC_013361


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  572 bits (2158),  Expect = 2e-164, Method: Compositional matrix adjust.
 Identities = 357/401 (90%), Positives = 380/401 (95%), Gaps = 0/401 (0%)

Query  1    MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M+   +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADRKALQKESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEAD + LQKESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVLFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAV FAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (375),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/65 (80%), Positives = 62/65 (96%), Gaps = 0/65 (0%)

Query  448  RKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWRV  507
            + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR+
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRI  456

Query  508  ALPTE  512
            ALP+E
Sbjct  457  ALPAE  461

136) ECO26_5403 in NC_013361


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  572 bits (2158),  Expect = 2e-164, Method: Compositional matrix adjust.
 Identities = 357/401 (90%), Positives = 380/401 (95%), Gaps = 0/401 (0%)

Query  1    MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M+   +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPAVQRLLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL+ LQKESDTLTGRV DPAVQR LRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVLFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAV FAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTL  401
            YAIEA+IRGM AEQRLAERQ KTKPLLKSLESWLREKMKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (375),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/65 (80%), Positives = 62/65 (96%), Gaps = 0/65 (0%)

Query  448  RKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWRV  507
            + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR+
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRI  456

Query  508  ALPTE  512
            ALP+E
Sbjct  457  ALPAE  461

137) ECED1_5010 in NC_011745


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  567 bits (2139),  Expect = 7e-163, Method: Compositional matrix adjust.
 Identities = 373/512 (73%), Positives = 414/512 (81%), Gaps = 51/512 (9%)

Query  1    MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNVGSCSEKVS  60
            M+   +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMN GS SEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKALQKESDTLTGRVDDPAVQRPLRQTRTRKPFPESHPRDEKRLLPAALCC  120
            RRIAQMEADL+ LQKESDTLTGRV DPAVQRPLRQTRTRKPFPES PRDEKRLLPAA CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGS  180
            P+CGGSLSYLGED+AEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAG+
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLT  240
            GLLARVL SKYAEHTPLY QSE+YGRQGVELSRSLLSGWVDACCRLLSPLEEAL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS+LAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PS             
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPS-------------  347

Query  361  YAIEAEIRGMTAELRLAERQLKTKPLLKSLESWLREKMKTLSRHSELAKAFAYALNQWPA  420
             A+  E     ++L   E +++  P  + L  + R K K L +          +L+ W  
Sbjct  348  -ALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR-KTKPLLK----------SLESW--  393

Query  421  LTYYADDGWAEADNNIAENALRMVSLGRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEP  480
                                LR     + + LFFGS+HGGERGALLYSLIGTCKLN+V+P
Sbjct  394  --------------------LR----EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDP  429

Query  481  ESYLRYVLDVIADWPINRVGELLPWRVALPTE  512
            ESYLR VL+VIADWP+NRV+ELLPWR+ALP+E
Sbjct  430  ESYLRHVLGVIADWPVNRVSELLPWRIALPAE  461

138) ECs3866 in NC_002695


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  566 bits (2136),  Expect = 1e-162, Method: Compositional matrix adjust.
 Identities = 347/352 (99%), Positives = 350/352 (99%), Gaps = 0/352 (0%)

Query  1    MNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRD  60
            MNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRD
Sbjct  50   MNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRD  109

Query  61   EKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAP  120
            EKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAP
Sbjct  110  EKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAP  169

Query  121  SRPIERGIAGPGLLARVLTSKYAEHTPLYRQSEIYGRQGVELRRSLLSGWVDACCRLLSP  180
            SRPIERGIAGPGLLARVLTSKYAEHTPLY QSEIYGRQGVEL RSLLSGWVDACCRLLSP
Sbjct  170  SRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSP  229

Query  181  LEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYS  240
            LEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYS
Sbjct  230  LEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYS  289

Query  241  PDRKGIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSAL  300
            PDRK+IHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSAL
Sbjct  290  PDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSAL  349

Query  301  TEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  352
            TEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL
Sbjct  350  TEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  109 bits (396),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 60/66 (91%), Positives = 63/66 (96%), Gaps = 0/66 (0%)

Query  398  GRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  457
             + + LFFGS+HGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  458  IALPAE  463
            IALPAE
Sbjct  456  IALPAE  461

139) ETEC_2142 in NC_017633


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  566 bits (2136),  Expect = 9e-163, Method: Compositional matrix adjust.
 Identities = 348/352 (99%), Positives = 351/352 (99%), Gaps = 0/352 (0%)

Query  1    MNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRD  60
            MNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRD
Sbjct  50   MNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRD  109

Query  61   EKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAP  120
            EKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAP
Sbjct  110  EKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAP  169

Query  121  SRPIERGIAGPGLLARVLTSKYAEHTPLYRQSEIYGRQGVELSRSLLSGWVDACCRLLSP  180
            SRPIERGIAGPGLLARVLTSKYAEHTPLY QSEIYGRQGVELSRSLLSGWVDACCRLLSP
Sbjct  170  SRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSP  229

Query  181  LEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYS  240
            LEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYS
Sbjct  230  LEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYS  289

Query  241  PDRKGIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSAL  300
            PDRK+IHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSAL
Sbjct  290  PDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSAL  349

Query  301  TEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  352
            TEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL
Sbjct  350  TEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score =  103 bits (373),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 52/66 (79%), Positives = 62/66 (94%), Gaps = 0/66 (0%)

Query  398  GRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWR  457
             + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  458  VALPTE  463
            +ALP+E
Sbjct  456  IALPAE  461

140) O3M_09465 in NC_018650


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  565 bits (2133),  Expect = 2e-162, Method: Compositional matrix adjust.
 Identities = 349/401 (88%), Positives = 375/401 (94%), Gaps = 0/401 (0%)

Query  1    MNDTSSDDILLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MND SSDDI+LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNLLQQESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPTEPCC  120
            RRIAQMEADLN LQ+ESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLP+ PCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSAFRVIRTVREKHACRRCDRIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRSAFRVIRTVREKHAC +CD IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHIPLYRQSEIYARQGVVLSRSVLSGWVDACCRLLAPLDEALQHYVLT  240
            GLLARVLTSKYAEH PLY QSEIY+RQGV LSRS+LSGWVDACCRLL+PL+EAL+ YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDMPVPVLLPGNKKTKTGRLWTYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADD PV VLLPGNKKTKTGRLW+YVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGHIKEATCWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G I EA+CWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIESELRGKRAEERQAVRHQKVLPLLASLEGGLREKQKTL  401
            YAIE+++RG  AE+R A R++K  PLL SLE+ LREK KTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score = 98.3 bits (354),  Expect = 7e-22, Method: Compositional matrix adjust.
 Identities = 50/60 (84%), Positives = 57/60 (95%), Gaps = 0/60 (0%)

Query  452  LFFGSDHGGERGASLYSLIGTCKLNGVDPERYLHHVLDVIADWPVNRVGALLPWRVTLPA  511
            LFFGS+HGGERGA LYSLIGTCKLN+VDPE YL+HVL+VIADWPVNRV+ LLPWR++LPA
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

141) O3O_16120 in NC_018661


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  565 bits (2133),  Expect = 2e-162, Method: Compositional matrix adjust.
 Identities = 349/401 (88%), Positives = 375/401 (94%), Gaps = 0/401 (0%)

Query  1    MNDTSSDDILLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MND SSDDI+LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNLLQQESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPTEPCC  120
            RRIAQMEADLN LQ+ESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLP+ PCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSAFRVIRTVREKHACRRCDRIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRSAFRVIRTVREKHAC +CD IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHIPLYRQSEIYARQGVVLSRSVLSGWVDACCRLLAPLDEALQHYVLT  240
            GLLARVLTSKYAEH PLY QSEIY+RQGV LSRS+LSGWVDACCRLL+PL+EAL+ YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDMPVPVLLPGNKKTKTGRLWTYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADD PV VLLPGNKKTKTGRLW+YVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGHIKEATCWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G I EA+CWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIESELRGKRAEERQAVRHQKVLPLLASLEGGLREKQKTL  401
            YAIE+++RG  AE+R A R++K  PLL SLE+ LREK KTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score = 98.3 bits (354),  Expect = 7e-22, Method: Compositional matrix adjust.
 Identities = 50/60 (84%), Positives = 57/60 (95%), Gaps = 0/60 (0%)

Query  452  LFFGSDHGGERGASLYSLIGTCKLNGVDPERYLHHVLDVIADWPVNRVGALLPWRVTLPA  511
            LFFGS+HGGERGA LYSLIGTCKLN+VDPE YL+HVL+VIADWPVNRV+ LLPWR++LPA
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

142) O3K_09500 in NC_018658


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  565 bits (2133),  Expect = 2e-162, Method: Compositional matrix adjust.
 Identities = 349/401 (88%), Positives = 375/401 (94%), Gaps = 0/401 (0%)

Query  1    MNDTSSDDILLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            MND SSDDI+LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNLLQQESDTLTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPTEPCC  120
            RRIAQMEADLN LQ+ESDTLTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLP+ PCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGSLSYLGEDAAEQLELMRSAFRVIRTVREKHACRRCDRIVQAPAPSRPIERGIAGP  180
            P+CGGSLSYLGED+AEQLELMRSAFRVIRTVREKHAC +CD IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHIPLYRQSEIYARQGVVLSRSVLSGWVDACCRLLAPLDEALQHYVLT  240
            GLLARVLTSKYAEH PLY QSEIY+RQGV LSRS+LSGWVDACCRLL+PL+EAL+ YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDMPVPVLLPGNKKTKTGRLWTYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADD PV VLLPGNKKTKTGRLW+YVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRDGHIKEATCWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYR+G I EA+CWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YAIESELRGKRAEERQAVRHQKVLPLLASLEGGLREKQKTL  401
            YAIE+++RG  AE+R A R++K  PLL SLE+ LREK KTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score = 98.3 bits (354),  Expect = 7e-22, Method: Compositional matrix adjust.
 Identities = 50/60 (84%), Positives = 57/60 (95%), Gaps = 0/60 (0%)

Query  452  LFFGSDHGGERGASLYSLIGTCKLNGVDPERYLHHVLDVIADWPVNRVGALLPWRVTLPA  511
            LFFGS+HGGERGA LYSLIGTCKLN+VDPE YL+HVL+VIADWPVNRV+ LLPWR++LPA
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

143) SSON53_15760 in NC_016822


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  564 bits (2129),  Expect = 3e-162, Method: Compositional matrix adjust.
 Identities = 361/463 (78%), Positives = 388/463 (84%), Gaps = 51/463 (11%)

Query  1    MNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRD  60
            MNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRD
Sbjct  50   MNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRD  109

Query  61   EKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAP  120
            EKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAP
Sbjct  110  EKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAP  169

Query  121  SRPIERGIAGPGLLARVLTSKYAEHTPLYRQSEIYGRQGVELSRSLLSGWVDACCRLLSP  180
            SRPIERGIAGPGLLARVLTSKYAEHTPLY QSEIYGRQGVELSRSLLSGWVDACCRLLSP
Sbjct  170  SRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSP  229

Query  181  MEEALHGYVLTDGKLHVDDTPVPVLLPGNKKTKTGRLWAYVRDDRNAGSTLAPAVWFAYS  240
            +EEALHGYV+TDGKLH DDTPV VLLPGNKKTKTGRLWAYVR+DRNAGS+LAPAVWFAYS
Sbjct  230  LEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYS  289

Query  241  PDRKGIHPQTHLAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSAL  300
            PDRK+IHPQTHLA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSAL
Sbjct  290  PDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSAL  349

Query  301  TEEALKRIGELYAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTLSRHSELAK  360
            TEEAL +IG+LYAI              E +++  P  + L  + R K K L +      
Sbjct  350  TEEALEQIGQLYAI--------------EADIRGMPAEQRLAERQR-KTKPLLK------  388

Query  361  AFAYALNQWPALTYYADDGWAEADNNIAENALRMVSLGRKNYLFFGSDHGGERGALLYSL  420
                +L+ W                      LR     + + LFFGS+HGGERGALLYSL
Sbjct  389  ----SLESW----------------------LR----EKMKTLFFGSGHGGERGALLYSL  418

Query  421  IGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWRVALPTE  463
            IGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR+ALP+E
Sbjct  419  IGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPAE  461

144) SSON_2666 in NC_007384


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  564 bits (2129),  Expect = 3e-162, Method: Compositional matrix adjust.
 Identities = 361/463 (78%), Positives = 388/463 (84%), Gaps = 51/463 (11%)

Query  1    MNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRD  60
            MNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRD
Sbjct  50   MNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRD  109

Query  61   EKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAP  120
            EKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAP
Sbjct  110  EKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAP  169

Query  121  SRPIERGIAGPGLLARVLTSKYAEHTPLYRQSEIYGRQGVELSRSLLSGWVDACCRLLSP  180
            SRPIERGIAGPGLLARVLTSKYAEHTPLY QSEIYGRQGVELSRSLLSGWVDACCRLLSP
Sbjct  170  SRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSP  229

Query  181  MEEALHGYVLTDGKLHVDDTPVPVLLPGNKKTKTGRLWAYVRDDRNAGSTLAPAVWFAYS  240
            +EEALHGYV+TDGKLH DDTPV VLLPGNKKTKTGRLWAYVR+DRNAGS+LAPAVWFAYS
Sbjct  230  LEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYS  289

Query  241  PDRKGIHPQTHLAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSAL  300
            PDRK+IHPQTHLA FSGVLQADAYAGFNELYR+G ITEAACWAHARRKIHDVHVR PSAL
Sbjct  290  PDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSAL  349

Query  301  TEEALKRIGELYAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTLSRHSELAK  360
            TEEAL +IG+LYAI              E +++  P  + L  + R K K L +      
Sbjct  350  TEEALEQIGQLYAI--------------EADIRGMPAEQRLAERQR-KTKPLLK------  388

Query  361  AFAYALNQWPALTYYADDGWAEADNNIAENALRMVSLGRKNYLFFGSDHGGERGALLYSL  420
                +L+ W                      LR     + + LFFGS+HGGERGALLYSL
Sbjct  389  ----SLESW----------------------LR----EKMKTLFFGSGHGGERGALLYSL  418

Query  421  IGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWRVALPTE  463
            IGTCKLN+V+PESYLR VL+VIADWP+NRV+ELLPWR+ALP+E
Sbjct  419  IGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPAE  461

145) ECP_3843 in NC_008253


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  561 bits (2119),  Expect = 2e-161, Method: Compositional matrix adjust.
 Identities = 344/350 (99%), Positives = 348/350 (99%), Gaps = 0/350 (0%)

Query  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQTQLDKLRRMNFGSRSEKVS  60
            MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQ+QLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120
            RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGP  180
            PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240
            GLLARVLTSKYAEHTPLY QSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTH  300
            DGKLHADDTPVQVLLPGNKKTKTGRLWAYVR+DRNAGSALAPAVWFAYSPDRK+IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LACFSGVLQADAYAGFNELYRNGRITEAACWAHARRKIHDVHVRIPSALT  350
            LACFSGVLQADAYAGFNELYRNG ITEAACWAHARRKIHDVHVRIPSALT
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALT  350

146) P12B_c1603 in NC_017663


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  523 bits (1975),  Expect = 4e-150, Method: Compositional matrix adjust.
 Identities = 319/362 (89%), Positives = 344/362 (96%), Gaps = 0/362 (0%)

Query  1    MHSLLPDDIDELKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVS  60
            M+ + +DDI  LK+ LAEQEAL +AL EKL++REREIDHLQAQLDKLRRMNFGSRSEKVS
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   RRIAQMEADLKQLQKESDILTGRVDDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAASCC  120
            RRIAQMEADL++LQKESD LTGRV DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAA+CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PECGGALSYLGEDAAEQLELMRSAFRVIRTVREKHACTQCDAIVQAAAPSRPIERGIAGP  180
            P+CGG+LSYLGED+AEQLELMRSAFRVIRTVREKHACTQCD+IVQA+APSRPIERGIAGP
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  GLLARVLTSKYAEHTPLYRQSEIYARQGVELSRSLLSGWVDACCRLLSPLEGALQDYVLT  240
            GLLARVLTSKYAEHTPLY QSEIY+RQGVELSRSLLSGWVDACCRLLSPLE AL++YV+T
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  DGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSELAPAVWFAYSPDRKGIHPRTH  300
            DGKLHADDTPV VLLPGNKKTKTGRLW+YVR+DRNAGS LAPAVWFAYSPDRK+IHP+TH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFSGVLQADAYAGFNELYRNGQITEAACWAHARRKIHDVHVRTPSALTEEALKRIGEL  360
            LA FSGVLQADAYAGFNELYRNG ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YV  362
            Y 
Sbjct  361  YA  362

147) c3563 in NC_004431


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  431 bits (1624),  Expect = 2e-122, Method: Compositional matrix adjust.
 Identities = 274/372 (74%), Positives = 302/372 (82%), Gaps = 51/372 (13%)

Query  1    MRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYRQ  60
            MRSAFRVIRTVREKHACTQCD+IVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLY Q
Sbjct  141  MRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQ  200

Query  61   SEIYGRQGVELSRSLLSGWVDACCRQLSPLEEALHGYVLTDGKLHADDTPVPVLLPGNKK  120
            SEIYGRQGVELSRSLLSGWVDACCR LSPLEEALHGYV+TDGKLHADDTPV VLLPGNKK
Sbjct  201  SEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKK  260

Query  121  TKTGRLWTYVRDDRNAGSTLAPAVWFAYSPDRKGIHPQTHLAGFSGVLQADAYAGFNELY  180
            TKTGRLW+YVR+DRNAGS+LAPAVWFAYSPDRK+IHPQTHLA FSGVLQADAYAGFNELY
Sbjct  261  TKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELY  320

Query  181  RDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGELYAIEAEIRGMTAEQRLAERQ  240
            R+G ITEAACWAHARRKIHDVHVR PSALTEEAL +IG+LYAIEA+IRGM A        
Sbjct  321  RNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPA--------  372

Query  241  LKTKPLLKSLESWLREKMKTLSRHSELAKAFAYALNQWPALTYYADDGWAEADNNIAENA  300
                      E +L E+ +        +K++  +L+ W                      
Sbjct  373  ----------EQRLAERQRK-------TKPLLKSLESW----------------------  393

Query  301  LRMVSLGRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVG  360
            LR     + + LFFGS+HGGERGALLYSLIGTCKLN+V+PESYLR VL+VIADWP+NRV+
Sbjct  394  LR----EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVS  449

Query  361  ELLPWRVALPTE  372
            ELLPWR+ALP+E
Sbjct  450  ELLPWRIALPAE  461

148) Bcenmc03_5560 in NC_010515


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  380 bits (1427),  Expect = 1e-106, Method: Compositional matrix adjust.
 Identities = 237/497 (48%), Positives = 337/497 (68%), Gaps = 52/497 (10%)

Query  8    LPDDIDALKAMVASLREQLSSRAIEIEHLKLTIAKLRRMQFGRKSEKLDRQIEQLELRLE  67
            L + +    A++ +L+E+LS+R  EI+HL+  + KLRRM+FG +SEK+ R+I Q+E  L+
Sbjct  12   LKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLN  71

Query  68   DLQADEGS-ADMATAAAVKRPSREGAGRKPLPDHLEREERIHLPADDDCPDCGGQLKPLG  126
             LQ + ++ ++    +AV+RP R+   RKP+P+ L R+E+  LPA   CP+CGG L  LG
Sbjct  72   RLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLG  131

Query  127  EDVAEQLEYVRAHFRVIRHRRPKLACACCDRIVQAAAPSRPIDRGIPGPALLAHIAVSKF  186
            ED AEQLE +R+ FRVIR  R K AC+ CD IVQA+APSRPI+RGI+GP+LLA++  SK+
Sbjct  132  EDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKY  191

Query  187  AYHIPLHRQAVMYAREGVEIDPGAMGYWMGSITALLAPLVDAVRRYALAGGKVHADDTPL  246
            A H PL  Q+ +Y+R+GVE+  + ++ W+++   LL+PL +A++ Y +++GK+HADDTP+
Sbjct  192  AEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPV  251

Query  247  PVLAPGNGRTKTGRLWVYVRDDRPSASEEPAAVWFAYTPDRRGEHPQQHLADFAGVLQAD  306
             VL PGN +TKTGRLW YVR+DR ++S  ++AVWFAY+PDR++ HPQ HLA F+GVLQAD
Sbjct  252  QVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQAD  311

Query  307  AFAGYAELYRGGTIQEAACMAHARRKIHDLHAVRPNAVTEEVLHRIGALYKIEEQIRGKP  366
            A+AG+ ELYR G I EAAC AHARRKIHD+H   P+A+TEE L++IG LY IE +IRG P
Sbjct  312  AYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMP  371

Query  367  PDERHGVRQARAVPLLDDMKRWFEATLATLSAKSDTTKAIRYALNRWPALIYYCSDGHAE  426
            +++R                         L+ +   TK++  +L+ W             
Sbjct  372  AEQR-------------------------LAERQRKTKPLLKSLESW-------------  393

Query  427  IDNLIAERALRGVALGRRNYLFVGADSGGERAAAMYSLIGTARLNGLDPEAYLAYVLERI  486
                     LR     + + LF G++ GGER+A +YSLIGT +LN++DPE+YL  VL  I
Sbjct  394  ---------LRE----KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVI  440

Query  487  ADHPINRIDELLPWNVA  503
            AD P+NR+ ELLPW +A
Sbjct  441  ADWPVNRVSELLPWRIA  457

149) GEM_3062 in NC_018513


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  374 bits (1406),  Expect = 6e-105, Method: Compositional matrix adjust.
 Identities = 241/496 (49%), Positives = 326/496 (66%), Gaps = 54/496 (10%)

Query  31   RIDHLEDLVESHEAVVATGKAEIEHLKLLIAKLRRMAFGRSSEKLDRQIeqlelkledle  90
            R+ + E L+++ +  ++    EI+HL+  + KLRRM FG  SEK+ R+I Q+E  L+ L+
Sbjct  15   RLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQ  74

Query  91   adeGATPIEL--PKTPRTAAEQIQRKPLPEHLPREVLTYLPESGEICTACGAAIKLLGED  148
             + ++    +  P   R   +   RKP+PE LPR+    LP ++  C  CG+++  LGED
Sbjct  75   KESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLP-AAPCCPNCGGSLSYLGED  133

Query  149  VSEQLEYVPASFRVIRHVRPKLACTCCDHIAQAPAPSRPIERGLAGPGLLAHVLVAKFAD  208
             +EQLE + ++FRVIR VR K ACT CD I QAPAPSRPIERG+AGPGLLA+VL +K+A+
Sbjct  134  TAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAE  193

Query  209  HLPLYRQSVIYAREGVELDRSLLAKWVGHGANLLQPLVDALRRHVMAATKLHADDTPVPV  268
            H PLY QS IY+R+GVEL RSLL+ WV+    LL PL +AL+  VM+  KLHADDTPV V
Sbjct  194  HTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQV  253

Query  269  LAPGNGKTKTGRLWVYVRDDRNSGDTTAPAVWFTYTPDRKGEHPQQHLARFKGTLQADAY  328
            L PGN KTKTGRLW YVR+DRN+G + APAVWF+Y+PDRK+ HPQ HLA F G LQADAY
Sbjct  254  LLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAY  313

Query  329  GGYQKIYERGDVVEAACWAHARRKFYDIHAVRPNALNTKALERIGALYRIEDEIRGEPPD  388
            +G++ +Y  G++ EAACWAHARRK+ D+H   P+AL   ALE+IG LY IE +IRG P++
Sbjct  314  AGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAE  373

Query  389  ARQAHRQTHAKPLLDELHTWLTAMLGTLSRKSDTSQAILYALNRWAALTRYCDDGHLEID  448
             R                         L+ +   ++++L +L+ W               
Sbjct  374  QR-------------------------LAERQRKTKPLLKSLESW---------------  393

Query  449  NLPAERALRSVAVGRRNYLFAGADSGGERAAAIYSLIGSAKLNGIDPEAYLRHVLGRIAD  508
                   LR     + + LF G++ GGER+A +YSLIG+ KLN++DPE+YLRHVLG IAD
Sbjct  394  -------LR----EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIAD  442

Query  509  HPINRSDELLPWRVTV  524
             P+NR  ELLPWR+++
Sbjct  443  WPVNRVSELLPWRIAL  458

150) BUPH_06384 in NC_018695


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  371 bits (1394),  Expect = 5e-104, Method: Compositional matrix adjust.
 Identities = 237/490 (49%), Positives = 323/490 (66%), Gaps = 54/490 (11%)

Query  36   QETVDSQQAALASRTAEVEHLKLLIAKLRRMQFGRKSEKLDHQIeqlelrleeleadeGA  95
            +  +++ Q  L++R  E++HL+  + KLRRM+FG +SEK+ ++I Q+E  L+ L+ + ++
Sbjct  20   EALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDT  79

Query  96   APVEI--PKTPRKALEQAPRKPLPEHLPREIRTHLPESAGKCTQCGGEMKSLGEDVAEQL  153
                +  P   R   +   RKP+PE LPR+ +  LP ++  C +CGG +  LGED AEQL
Sbjct  80   LTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPC-CPNCGGSLSYLGEDTAEQL  138

Query  154  EYVPASFRVIRHVRPKFACVCCDHIAQAPAPSRPIERGLAGPGLLAHVLVSKFADHVPLY  213
            E + ++FRVIR VR K AC  CD I QAPAPSRPIERG+AGPGLLA+VL SK+A+H PLY
Sbjct  139  ELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLY  198

Query  214  RQSVMYAREGVELDRSLLAKWVGHAATLLQPLVETLRRHVMLATKLHADDTPVPVLAPGN  273
             QS +Y+R+GVEL RSLL+ WV+    LL PL E+L+  VM   KLHADDTPV VL PGN
Sbjct  199  CQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGN  258

Query  274  GKTKTGRLWVYVRDDRASADMTPPAVWFAYTPDRKSIHPQQHLGSFNGTLQADAYGGYQA  333
             KTKTGRLW YVR+DR ++   +PAVWFAY+PDRKSIHPQ HL+ F+G LQADAY+G++ 
Sbjct  259  KKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNE  318

Query  334  IYETGRVTEAACWAHARRQFYELHAARPNALNTEALERIGALYRIEETIRGKPPDQRSAH  393
            +Y  G +TEAACWAHARR++ ++H   P+AL  EALE+IG LY IE  IRG P++QR   
Sbjct  319  LYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQR---  375

Query  394  RQAHARPLLDQFHAWLTTTLETLSRKSDTSRAILYALNRWEALTRYCGDGQLEIDNLPVE  453
                                  L+ +   ++++L +L+ W                    
Sbjct  376  ----------------------LAERQRKTKPLLKSLESW--------------------  393

Query  454  RALRGVAIGRRNYLFAGADSGGERAAAIYSLIGTAKLNGIDPEAYLRYVLARIADHAINR  513
              LR     + + LF G++ GGER+A +YSLIGT KLN++DPE+YLR VL+ IAD ++NR
Sbjct  394  --LRE----KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNR  447

Query  514  IDELAPWVVA  523
            + EL PW +A
Sbjct  448  VSELLPWRIA  457

151) BTH_I1449 in NC_007651


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  369 bits (1388),  Expect = 1e-103, Method: Compositional matrix adjust.
 Identities = 241/510 (48%), Positives = 337/510 (67%), Gaps = 56/510 (10%)

Query  9    DDIEAPKAMLLERDARIGHLEDVVESHKAANATAKAEIEHLKLLIAKLRRMQFGRKSEKl  68
            +DI +    LL +  R+++ E ++++ +   +    EI+HL+  + KLRRM+FG +SEK+
Sbjct  2    NDISSDDIFLLKQ--RLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV  59

Query  69   drqieqlelrleeleadeGAAPIEI--PKTPRTAPEQSPRKPLPEHLPREEQTHLPQSTE  126
             R+I Q+E  L+ L+ + ++    +  P   R   +   RKP+PE LPR+E+  LP ++ 
Sbjct  60   SRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLP-AAP  118

Query  127  TCSECGGKLKLLGEDVSEQLEYVPASFRVIRHVRPKFACACCDHIAQAAAPSRPIERGLA  186
             C++CGG L  LGED +EQLE + ++FRVIR VR K AC+ CD I QA+APSRPIERG+A
Sbjct  119  CCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIA  178

Query  187  GPGLLAHVLVSKFADHIPLYRQSVMYAREGVELDRSLLAKWVGHGATLLQPLVDALRRHV  246
            GPGLLA+VL SK+A+H PLY QS +Y+R+GVEL RSLL+ WV+    LL PL +AL+  V
Sbjct  179  GPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYV  238

Query  247  MTGTKLHADDTPVPVLEPGSGKTKTGRLWVYVRDDRSSADMTPPAVWFAYTPDRKGIHPQ  306
            MT+ KLHADDTPV VL PG+ KTKTGRLW YVR+DR+++   +PAVWFAY+PDRK+IHPQ
Sbjct  239  MTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQ  298

Query  307  QHLETFSGTLQADAYGGYQAIYETGRVREAACWAHARRQFYELHAARPNALNTEALERIG  366
             HL  FSG LQADAY+G++ +Y  G + EAACWAHARR++ ++H   P+AL  EALE+IG
Sbjct  299  THLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIG  358

Query  367  ALYKIEDAIRGKPPDERRAYREAHARPLLSQLHAWLTATLETLSKKSDTSRAILYALNRW  426
             LY IE  IRG P+++R                         L+ +   ++++L +L+ W
Sbjct  359  QLYAIEADIRGMPAEQR-------------------------LAERQRKTKPLLKSLESW  393

Query  427  EALTRYCDDGQLEIDNLPVERALRGVAIGRRNYLFAGADSGGERAAAIYSLIGTAKLNGI  486
                                  LR     + + LF G++ GGER+A +YSLIGT KLN++
Sbjct  394  ----------------------LRE----KMKTLFFGSGHGGERGALLYSLIGTCKLNDV  427

Query  487  DPEAYLRFVLARIADHAINRVDQLMPWAIA  516
            DPE+YLR VL+ IAD ++NRV +L+PW IA
Sbjct  428  DPESYLRHVLGVIADWPVNRVSELLPWRIA  457

152) BTH_I1439 in NC_007651


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  368 bits (1384),  Expect = 3e-103, Method: Compositional matrix adjust.
 Identities = 242/510 (48%), Positives = 337/510 (67%), Gaps = 56/510 (10%)

Query  9    DDIEALKAMLLERDARIGHLEDVVESHKAANATAKAEIEHLKLLIAKLRRMQFGRKSEKl  68
            +DI +    LL +  R+++ E ++++ +   +    EI+HL+  + KLRRM+FG +SEK+
Sbjct  2    NDISSDDIFLLKQ--RLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV  59

Query  69   drqieqlelrleeleadeGAAPIEI--PKTPRTAPEQSPRKPLPEHLPREEQTHLPQSTE  126
             R+I Q+E  L+ L+ + ++    +  P   R   +   RKP+PE LPR+E+  LP ++ 
Sbjct  60   SRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLP-AAP  118

Query  127  TCSECGGKLKLLGEDVSEQLEYVPASFRVIRHVRPKFACACCDHIAQAAAPSRPIERGLA  186
             C++CGG L  LGED +EQLE + ++FRVIR VR K AC+ CD I QA+APSRPIERG+A
Sbjct  119  CCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIA  178

Query  187  GPGLLAHVLVSKFADHIPLYRQSVMYAREGVELDRSLLAKWVGHGATLLQPLVDALRRHV  246
            GPGLLA+VL SK+A+H PLY QS +Y+R+GVEL RSLL+ WV+    LL PL +AL+  V
Sbjct  179  GPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYV  238

Query  247  MTGTKLHADDTPVPVLEPGNGKTKTGRLWVYVRDDRSSADMTPPAVWFAYTPDRKGIHPQ  306
            MT+ KLHADDTPV VL PGN KTKTGRLW YVR+DR+++   +PAVWFAY+PDRK+IHPQ
Sbjct  239  MTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQ  298

Query  307  QHLETFSGTLQADAYGGYQAIYETGRVREAACWAHARRQFYELHAARPNALNTEALERIG  366
             HL  FSG LQADAY+G++ +Y  G + EAACWAHARR++ ++H   P+AL  EALE+IG
Sbjct  299  THLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIG  358

Query  367  ALYKIEDAIRGKPPDERRAYREAHARPLLSQLHAWLTATLETLSKKSDTSRAILYALNRW  426
             LY IE  IRG P+++R                         L+ +   ++++L +L+ W
Sbjct  359  QLYAIEADIRGMPAEQR-------------------------LAERQRKTKPLLKSLESW  393

Query  427  EALTRYCDDGQLEIDNLPVERALRGVAIGRRNYLFAGADSGGERAAAIYSLIGTAKLNGI  486
                                  LR     + + LF G++ GGER+A +YSLIGT KLN++
Sbjct  394  ----------------------LRE----KMKTLFFGSGHGGERGALLYSLIGTCKLNDV  427

Query  487  DPEAYLRFVLARIADHAINRVDQLMPWAIA  516
            DPE+YLR VL+ IAD ++NRV +L+PW IA
Sbjct  428  DPESYLRHVLGVIADWPVNRVSELLPWRIA  457

153) BTH_I1450 in NC_007651


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  368 bits (1384),  Expect = 3e-103, Method: Compositional matrix adjust.
 Identities = 242/510 (48%), Positives = 337/510 (67%), Gaps = 56/510 (10%)

Query  9    DDIEALKAMLLERDARIGHLEDVVESHKAANATAKAEIEHLKLLIAKLRRMQFGRKSEKl  68
            +DI +    LL +  R+++ E ++++ +   +    EI+HL+  + KLRRM+FG +SEK+
Sbjct  2    NDISSDDIFLLKQ--RLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV  59

Query  69   drqieqlelrleeleadeGAAPIEI--PKTPRTAPEQSPRKPLPEHLPREEQTHLPQSTE  126
             R+I Q+E  L+ L+ + ++    +  P   R   +   RKP+PE LPR+E+  LP ++ 
Sbjct  60   SRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLP-AAP  118

Query  127  TCSECGGKLKLLGEDVSEQLEYVPASFRVIRHVRPKFACACCDHIAQAAAPSRPIERGLA  186
             C++CGG L  LGED +EQLE + ++FRVIR VR K AC+ CD I QA+APSRPIERG+A
Sbjct  119  CCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIA  178

Query  187  GPGLLAHVLVSKFADHIPLYRQSVMYAREGVELDRSLLAKWVGHGATLLQPLVDALRRHV  246
            GPGLLA+VL SK+A+H PLY QS +Y+R+GVEL RSLL+ WV+    LL PL +AL+  V
Sbjct  179  GPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYV  238

Query  247  MTGTKLHADDTPVPVLEPGNGKTKTGRLWVYVRDDRSSADMTPPAVWFAYTPDRKGIHPQ  306
            MT+ KLHADDTPV VL PGN KTKTGRLW YVR+DR+++   +PAVWFAY+PDRK+IHPQ
Sbjct  239  MTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQ  298

Query  307  QHLETFSGTLQADAYGGYQAIYETGRVREAACWAHARRQFYELHAARPNALNTEALERIG  366
             HL  FSG LQADAY+G++ +Y  G + EAACWAHARR++ ++H   P+AL  EALE+IG
Sbjct  299  THLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIG  358

Query  367  ALYKIEDAIRGKPPDERRAYREAHARPLLSQLHAWLTATLETLSKKSDTSRAILYALNRW  426
             LY IE  IRG P+++R                         L+ +   ++++L +L+ W
Sbjct  359  QLYAIEADIRGMPAEQR-------------------------LAERQRKTKPLLKSLESW  393

Query  427  EALTRYCDDGQLEIDNLPVERALRGVAIGRRNYLFAGADSGGERAAAIYSLIGTAKLNGI  486
                                  LR     + + LF G++ GGER+A +YSLIGT KLN++
Sbjct  394  ----------------------LRE----KMKTLFFGSGHGGERGALLYSLIGTCKLNDV  427

Query  487  DPEAYLRFVLARIADHAINRVDQLMPWAIA  516
            DPE+YLR VL+ IAD ++NRV +L+PW IA
Sbjct  428  DPESYLRHVLGVIADWPVNRVSELLPWRIA  457

154) BTH_I2688 in NC_007651


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  368 bits (1384),  Expect = 3e-103, Method: Compositional matrix adjust.
 Identities = 242/510 (48%), Positives = 337/510 (67%), Gaps = 56/510 (10%)

Query  9    DDIEALKAMLLERDARIGHLEDVVESHKAANATAKAEIEHLKLLIAKLRRMQFGRKSEKl  68
            +DI +    LL +  R+++ E ++++ +   +    EI+HL+  + KLRRM+FG +SEK+
Sbjct  2    NDISSDDIFLLKQ--RLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV  59

Query  69   drqieqlelrleeleadeGAAPIEI--PKTPRTAPEQSPRKPLPEHLPREEQTHLPQSTE  126
             R+I Q+E  L+ L+ + ++    +  P   R   +   RKP+PE LPR+E+  LP ++ 
Sbjct  60   SRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLP-AAP  118

Query  127  TCSECGGKLKLLGEDVSEQLEYVPASFRVIRHVRPKFACACCDHIAQAAAPSRPIERGLA  186
             C++CGG L  LGED +EQLE + ++FRVIR VR K AC+ CD I QA+APSRPIERG+A
Sbjct  119  CCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIA  178

Query  187  GPGLLAHVLVSKFADHIPLYRQSVMYAREGVELDRSLLAKWVGHGATLLQPLVDALRRHV  246
            GPGLLA+VL SK+A+H PLY QS +Y+R+GVEL RSLL+ WV+    LL PL +AL+  V
Sbjct  179  GPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYV  238

Query  247  MTGTKLHADDTPVPVLEPGNGKTKTGRLWVYVRDDRSSADMTPPAVWFAYTPDRKGIHPQ  306
            MT+ KLHADDTPV VL PGN KTKTGRLW YVR+DR+++   +PAVWFAY+PDRK+IHPQ
Sbjct  239  MTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQ  298

Query  307  QHLETFSGTLQADAYGGYQAIYETGRVREAACWAHARRQFYELHAARPNALNTEALERIG  366
             HL  FSG LQADAY+G++ +Y  G + EAACWAHARR++ ++H   P+AL  EALE+IG
Sbjct  299  THLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIG  358

Query  367  ALYKIEDAIRGKPPDERRAYREAHARPLLSQLHAWLTATLETLSKKSDTSRAILYALNRW  426
             LY IE  IRG P+++R                         L+ +   ++++L +L+ W
Sbjct  359  QLYAIEADIRGMPAEQR-------------------------LAERQRKTKPLLKSLESW  393

Query  427  EALTRYCDDGQLEIDNLPVERALRGVAIGRRNYLFAGADSGGERAAAIYSLIGTAKLNGI  486
                                  LR     + + LF G++ GGER+A +YSLIGT KLN++
Sbjct  394  ----------------------LRE----KMKTLFFGSGHGGERGALLYSLIGTCKLNDV  427

Query  487  DPEAYLRFVLARIADHAINRVDQLMPWAIA  516
            DPE+YLR VL+ IAD ++NRV +L+PW IA
Sbjct  428  DPESYLRHVLGVIADWPVNRVSELLPWRIA  457

155) BTH_I2735 in NC_007651


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  368 bits (1384),  Expect = 3e-103, Method: Compositional matrix adjust.
 Identities = 242/510 (48%), Positives = 337/510 (67%), Gaps = 56/510 (10%)

Query  9    DDIEALKAMLLERDARIGHLEDVVESHKAANATAKAEIEHLKLLIAKLRRMQFGRKSEKl  68
            +DI +    LL +  R+++ E ++++ +   +    EI+HL+  + KLRRM+FG +SEK+
Sbjct  2    NDISSDDIFLLKQ--RLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV  59

Query  69   drqieqlelrleeleadeGAAPIEI--PKTPRTAPEQSPRKPLPEHLPREEQTHLPQSTE  126
             R+I Q+E  L+ L+ + ++    +  P   R   +   RKP+PE LPR+E+  LP ++ 
Sbjct  60   SRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLP-AAP  118

Query  127  TCSECGGKLKLLGEDVSEQLEYVPASFRVIRHVRPKFACACCDHIAQAAAPSRPIERGLA  186
             C++CGG L  LGED +EQLE + ++FRVIR VR K AC+ CD I QA+APSRPIERG+A
Sbjct  119  CCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIA  178

Query  187  GPGLLAHVLVSKFADHIPLYRQSVMYAREGVELDRSLLAKWVGHGATLLQPLVDALRRHV  246
            GPGLLA+VL SK+A+H PLY QS +Y+R+GVEL RSLL+ WV+    LL PL +AL+  V
Sbjct  179  GPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYV  238

Query  247  MTGTKLHADDTPVPVLEPGNGKTKTGRLWVYVRDDRSSADMTPPAVWFAYTPDRKGIHPQ  306
            MT+ KLHADDTPV VL PGN KTKTGRLW YVR+DR+++   +PAVWFAY+PDRK+IHPQ
Sbjct  239  MTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQ  298

Query  307  QHLETFSGTLQADAYGGYQAIYETGRVREAACWAHARRQFYELHAARPNALNTEALERIG  366
             HL  FSG LQADAY+G++ +Y  G + EAACWAHARR++ ++H   P+AL  EALE+IG
Sbjct  299  THLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIG  358

Query  367  ALYKIEDAIRGKPPDERRAYREAHARPLLSQLHAWLTATLETLSKKSDTSRAILYALNRW  426
             LY IE  IRG P+++R                         L+ +   ++++L +L+ W
Sbjct  359  QLYAIEADIRGMPAEQR-------------------------LAERQRKTKPLLKSLESW  393

Query  427  EALTRYCDDGQLEIDNLPVERALRGVAIGRRNYLFAGADSGGERAAAIYSLIGTAKLNGI  486
                                  LR     + + LF G++ GGER+A +YSLIGT KLN++
Sbjct  394  ----------------------LRE----KMKTLFFGSGHGGERGALLYSLIGTCKLNDV  427

Query  487  DPEAYLRFVLARIADHAINRVDQLMPWAIA  516
            DPE+YLR VL+ IAD ++NRV +L+PW IA
Sbjct  428  DPESYLRHVLGVIADWPVNRVSELLPWRIA  457

156) BTH_I3140 in NC_007651


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  368 bits (1384),  Expect = 3e-103, Method: Compositional matrix adjust.
 Identities = 242/510 (48%), Positives = 337/510 (67%), Gaps = 56/510 (10%)

Query  9    DDIEALKAMLLERDARIGHLEDVVESHKAANATAKAEIEHLKLLIAKLRRMQFGRKSEKl  68
            +DI +    LL +  R+++ E ++++ +   +    EI+HL+  + KLRRM+FG +SEK+
Sbjct  2    NDISSDDIFLLKQ--RLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV  59

Query  69   drqieqlelrleeleadeGAAPIEI--PKTPRTAPEQSPRKPLPEHLPREEQTHLPQSTE  126
             R+I Q+E  L+ L+ + ++    +  P   R   +   RKP+PE LPR+E+  LP ++ 
Sbjct  60   SRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLP-AAP  118

Query  127  TCSECGGKLKLLGEDVSEQLEYVPASFRVIRHVRPKFACACCDHIAQAAAPSRPIERGLA  186
             C++CGG L  LGED +EQLE + ++FRVIR VR K AC+ CD I QA+APSRPIERG+A
Sbjct  119  CCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIA  178

Query  187  GPGLLAHVLVSKFADHIPLYRQSVMYAREGVELDRSLLAKWVGHGATLLQPLVDALRRHV  246
            GPGLLA+VL SK+A+H PLY QS +Y+R+GVEL RSLL+ WV+    LL PL +AL+  V
Sbjct  179  GPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYV  238

Query  247  MTGTKLHADDTPVPVLEPGNGKTKTGRLWVYVRDDRSSADMTPPAVWFAYTPDRKGIHPQ  306
            MT+ KLHADDTPV VL PGN KTKTGRLW YVR+DR+++   +PAVWFAY+PDRK+IHPQ
Sbjct  239  MTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQ  298

Query  307  QHLETFSGTLQADAYGGYQAIYETGRVREAACWAHARRQFYELHAARPNALNTEALERIG  366
             HL  FSG LQADAY+G++ +Y  G + EAACWAHARR++ ++H   P+AL  EALE+IG
Sbjct  299  THLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIG  358

Query  367  ALYKIEDAIRGKPPDERRAYREAHARPLLSQLHAWLTATLETLSKKSDTSRAILYALNRW  426
             LY IE  IRG P+++R                         L+ +   ++++L +L+ W
Sbjct  359  QLYAIEADIRGMPAEQR-------------------------LAERQRKTKPLLKSLESW  393

Query  427  EALTRYCDDGQLEIDNLPVERALRGVAIGRRNYLFAGADSGGERAAAIYSLIGTAKLNGI  486
                                  LR     + + LF G++ GGER+A +YSLIGT KLN++
Sbjct  394  ----------------------LRE----KMKTLFFGSGHGGERGALLYSLIGTCKLNDV  427

Query  487  DPEAYLRFVLARIADHAINRVDQLMPWAIA  516
            DPE+YLR VL+ IAD ++NRV +L+PW IA
Sbjct  428  DPESYLRHVLGVIADWPVNRVSELLPWRIA  457

157) c3615 in NC_004431


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  368 bits (1382),  Expect = 4e-103, Method: Compositional matrix adjust.
 Identities = 231/367 (63%), Positives = 295/367 (81%), Gaps = 4/367 (1%)

Query  60   HLRAQIEKLRRMLFGTRSEKLRREVEQAEALLKQREQESDRYSGREDDPLVPRQLRQSRH  119
            HL+AQ++KLRRM FG+RSEK+ R + Q EA L++ ++ESD  +GR  DP V R LRQ+R 
Sbjct  39   HLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRT  98

Query  120  RRPLPAYLPREIYRLepeesccpecggeLDYLGEVSAEQLELVSSALKVIRTERVKKACT  179
            R+P+P  LPR+  RL P  +CCP+CGG L YLGE +AEQLEL+ SA++VIRT R K ACT
Sbjct  99   RKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACT  158

Query  180  KCDCIVEAPAPSRPIERGIAGPGLLARVLTGKYCEHLPLYRQSEIFARQGVELSRALLSN  239
            +CD IV+APAPSRPIERGIAGPGLLARVLT+KY EH PLY QSEI++RQGVELSR+LLS 
Sbjct  159  QCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSG  218

Query  240  WVDACCQLMTPLNDALYSYVMNTRKVHTDDTPVKVLAPGRKKAKTGYIWTYVRDDRNAGS  299
            WVDACC+L++PL++AL +YVM   K+H+DDTPV+VL PG KK+KTG +W+YVR+DRNAGS
Sbjct  219  WVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGS  278

Query  300  PEPPAVWFAYSPDHQGKHPEQHLRPFRGILQADAFAGYDRLFSAEREGGALTEAGCWAHA  359
            + +PAVWFAYSPD+++ HP+ HL  F G+LQADA+AG++ L+      G++TEA+CWAHA
Sbjct  279  ALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR----NGGITEAACWAHA  334

Query  360  RRKIHDVYISTKSATAEEALKLIGELYAIEHEIRGLPVSERLAVRQMQSKPLLTSLYKLM  419
            RRKIHDV +   SA +EEAL  IG+LYAIE +IRG+P  +RLA RQ ++KPLL SL   +
Sbjct  335  RRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWL  394

Query  420  QEKEHTL  426
            +EK  TL
Sbjct  395  REKMKTL  401

158) Bcen2424_6857 in NC_008545


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  368 bits (1382),  Expect = 5e-103, Method: Compositional matrix adjust.
 Identities = 242/513 (48%), Positives = 331/513 (65%), Gaps = 56/513 (10%)

Query  9    DDIEALKALLLERDARIGHLEDLVESHEAVVAMGKAEIEHLKLLIAKLRRMAFGRSSEKL  68
            +DI +   +LL +  R+++ E L+++ +  ++    EI+HL+  + KLRRM FG  SEK+
Sbjct  2    NDISSDDIFLLKQ--RLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV  59

Query  69   DRqieqlelkledleadegaaliei--PKAPRTAPEQIQRKPLPGYLPRDIRTYLPESDE  126
             R+I Q+E  L+ L+ + ++    +  P   R   +   RKP+P  LPRD +  LP +  
Sbjct  60   SRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLP-AAP  118

Query  127  TCTACGGAMKPLGEDVSEQLEYVAASFRVIRHVRPKLACTGCDQIAQAAAPSRPIERGQA  186
             C  CGG++  LGED +EQLE + ++FRVIR VR K ACT CD I QA+APSRPIERG A
Sbjct  119  CCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIA  178

Query  187  GPGLLAHVLVAKFNDHLPLYRQSAIYAREGVELDRSLLAKWVGHSAKLLQPLVDALRLHV  246
            GPGLLA+VL +K+ +H PLY QS IY+R+GVEL RSLL+ WV+   +LL PL +AL+  V
Sbjct  179  GPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYV  238

Query  247  MAATKLHADDTPVPVLAPGNGKTKTGRLWVYVRDDRYSGDKAPPAVWFAYTPDRKGEHPQ  306
            M+  KLHADDTPV VL PGN KTKTGRLW YVR+DR +G   +PAVWFAY+PDRK+ HPQ
Sbjct  239  MTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQ  298

Query  307  QHLAKFKGTLQADAYGGYQKIYETGKVLEAACWAHARRKFYDLYAARPNALNKEALERIG  366
             HLA F G LQADAY+G++ +Y  G + EAACWAHARRK+ D+    P+AL  EALE+IG
Sbjct  299  THLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIG  358

Query  367  ALYEVEEAIRSKPPDERQAHRQTNAKPLLEQFHVWLNAALATLSRKSDTSQAILYVLNRW  426
             LY +E  IR+ P+++R                         L+ +   ++++L  L+ W
Sbjct  359  QLYAIEADIRGMPAEQR-------------------------LAERQRKTKPLLKSLESW  393

Query  427  EALTRYCDDGQLEIDNLPVERALRGVALGRRNYLFAGADSGGERAAAIYSLIGTAKLNGI  486
                                  LR     + + LF G++ GGER+A +YSLIGT KLN++
Sbjct  394  ----------------------LRE----KMKTLFFGSGHGGERGALLYSLIGTCKLNDV  427

Query  487  DPEAYLRHVLARIADHPINRIDELLPWTVTLPT  519
            DPE+YLRHVL+ IAD P+NR+ ELLPW ++LP+
Sbjct  428  DPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

159) BTH_I1447 in NC_007651


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  366 bits (1374),  Expect = 2e-102, Method: Compositional matrix adjust.
 Identities = 240/510 (48%), Positives = 335/510 (66%), Gaps = 56/510 (10%)

Query  9    DDIEALKAMLLERDARIGHLEDVVESHKAANATAKAEIEHLKLLIAKLRRMQFGRKSEKl  68
            +DI +    LL +  R+++ E ++++ +   +    EI+HL+  + KLRRM+FG +SEK+
Sbjct  2    NDISSDDIFLLKQ--RLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV  59

Query  69   drqieqlelrleeleadeGAAPIEI--PKTPRTAPEQSPRKPLPEHLPREEQTHLPQSTE  126
             R+I Q+E  L+ L+ + ++    +  P   R   +   RKP+PE LPR+E+  LP ++ 
Sbjct  60   SRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLP-AAP  118

Query  127  TCSECGGKLKLLGEDVSEQLEYVPASFRVIRHARPKFACACCDHIAQAAAPSRPIERGLA  186
             C++CGG L  LGED +EQLE + ++FRVIR  R K AC+ CD I QA+APSRPIERG+A
Sbjct  119  CCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIA  178

Query  187  GPGLLAHVLVSKFADHIPLYRQSVMYAREGVELDRSLLAKWVGHGATLLQPLVDALRRHV  246
            GPGLLA+VL SK+A+H PLY QS +Y+R+GVEL RSLL+ WV+    LL PL +AL+  V
Sbjct  179  GPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYV  238

Query  247  MTGTKLHADDTPVPVLEPGNGKTKTGRLWVYVRDDRSSADMTPPAVWFAYTPDRKGIHPQ  306
            MT+ KLHADDTPV VL PGN KTKTGRLW YVR+DR+++   +PAVWFAY+PDRK+IHPQ
Sbjct  239  MTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQ  298

Query  307  QHLETFSGTLQADAYGGYQAIYETGRVRETACWAHARRQFYELHAARPNALNTEALERIG  366
             HL  FSG LQADAY+G++ +Y  G + E+ACWAHARR++ ++H   P+AL  EALE+IG
Sbjct  299  THLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIG  358

Query  367  ALYKIEDAIRGKPPDERRAYREAHARPLLSQLHAWLTATLETLSKKSDTSRAILYALNRW  426
             LY IE  IRG P+++R                         L+ +   ++++L +L+ W
Sbjct  359  QLYAIEADIRGMPAEQR-------------------------LAERQRKTKPLLKSLESW  393

Query  427  EALTRYCDDGQLEIDNLPVERALRGVAIGRRNYLFAGADSGGERAAAIYSLIGTAKLNGI  486
                                  LR     + + LF G++ GGER+A +YSLIGT KLN++
Sbjct  394  ----------------------LRE----KMKTLFFGSGHGGERGALLYSLIGTCKLNDV  427

Query  487  DPEAYLRFVLARIADHATNRVDQLMPWAIA  516
            DPE+YLR VL+ IAD + NRV +L+PW IA
Sbjct  428  DPESYLRHVLGVIADWPVNRVSELLPWRIA  457

160) Pat9b_4123 in NC_014842


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  365 bits (1373),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 222/380 (59%), Positives = 286/380 (76%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEISRLKALVAKLQRMQFGKSSEKLREKTQRQVREAEERIDALQEEMAEVL  92
            L ++++    EI +L+A + KL+RM+FG  SEK+     R++ + E  ++ LQ E   + 
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQNDPVLPQPLRQSSARKPLPITLPRETRTLLPAEITCPACGGELSALGCDMSEQLELI  152
            G   DP + +PLRQ+ +RKP+P +LPR+ + LLPA   CP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  NSAFKVIETQRPKLACRSCDHIVQAPTPSNPIERSYAGSGLLARIVTAKFAEHTPHYRQS  212
             SAF+VI T R K AC  CD IVQAP+PS PIER+ AG+GLLAR++T+K+AEHTP Y QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWSGAVSELLEPLYELLRQYVLMPGKVHTDDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL E L+ YV+  GK+H+DD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQLPPAVWFAYSPDRKGMHPQQHLAGYSGILQADAYGGYNALYE  332
            +T+RLW YVR+DRNAGS L+PAVWFAYSPDRK++HPQ HLA +SG+LQADAY+G+N LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  DGRITEAACMAHARRKIHDVHVRTPTDITTEALKRIGELYAIEADIRGSPAEKRLAVRKV  392
            +G ITEAAC AHARRKIHDVHVR P+ +T EAL +IG+LYAIEADIRG PAE+RLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  RTVPLMLSLYDWIQGQMIVL  412
            +T PL+ SL  W++ +M  L
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 79.2 bits (281),  Expect = 4e-16, Method: Compositional matrix adjust.
 Identities = 38/61 (63%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  LFAGSDAGGESAAVLYSLIGTCRLNGVEPEAWLRYVIGHIQDWPVNRVRDLLPWKVDLTS  522
            LF GS+ GGE +A+LYSLIGTC+LN+V+PE+ LR V+G I DWPVNRV +LLPW++ L +
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  A  523
             
Sbjct  461  E  461

161) XNC1_0578 in NC_014228


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  365 bits (1372),  Expect = 3e-102, Method: Compositional matrix adjust.
 Identities = 217/387 (57%), Positives = 295/387 (77%), Gaps = 7/387 (1%)

Query  15   LLREQMAANKILTENNRLLSQRVASYASEITRLKARVVKLQRMQFGQSSEKIRQKAERQI  74
            LL++++A +  L +    L +++++   EI +L+A++ KL+RM+FG  SEK+     R+I
Sbjct  11   LLKQRLAEQEALIHA---LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRI  63

Query  75   REVQAHISHLQEEMVDILGKQPDPALPPALRQSSSRKPLPATLPREIQLLLPAEKNCPEC  134
             +++A++++LQ E   + G+  DPA+  +LRQ+ +RKP+P +LPR+ + LLPA   CP+C
Sbjct  64   AQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  135  GGERHALGCDISEQLEIISSAFKVIETQRPKLACGRCDGIVQSPMPSKPIERSYAGPGLL  194
            GG    LG D +EQLE++ SAF+VI T R K AC +CD IVQ+P PS+PIER+ AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  195  ARIVTAKFAEHMPLYRQSEIYNRQGVALSRATLGRWSGAVSELLEPLYDVLRQYVLMPGK  254
            AR++T+K+AEH PLY QSEIY RQGV LSR+ L+ W +A   LL PL + L+ YV+  GK
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  255  VHGDDIPVPVQAPGNGKTRTGRLWVYVRDDRNAGSVMPPAVWFAYSADRKGVHPQQHLAG  314
            +H+DD PV V  PGN KT+TGRLW YVR+DRNAGS ++PAVWFAYS+DRK++HPQ HLA 
Sbjct  244  LHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLAC  303

Query  315  YSGVLQADAYGGYRALYETGNITEAACMAHARRKIHDVHVRSPTAITTEALKRIGELYAI  374
            +SGVLQADAY+G+  LY  G ITEAAC AHARRKIHDVHVR P+A+T EAL +IG+LYAI
Sbjct  304  FSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAI  363

Query  375  EAEIRGSPAEERLALRKARSAPLMQLL  401
            EA+IRG PAE+RLA R+ ++ PL++ L
Sbjct  364  EADIRGMPAEQRLAERQRKTKPLLKSL  390


 Score = 77.1 bits (273),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 36/65 (56%), Positives = 51/65 (79%), Gaps = 0/65 (0%)

Query  458  GRKNGLFAGSDSGGERAAILYSLIGSCRLNGVEPEAWLRYTISHIADWPSNKVHELLPWK  517
             + + LF GS+ GGER+A+LYSLIG+C+LN+V+PE+ LR  ++ IADWP N+V ELLPW+
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  518  LNLTN  522
            + L  
Sbjct  456  IALPA  460

162) Pat9b_4110 in NC_014842


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  364 bits (1369),  Expect = 5e-102, Method: Compositional matrix adjust.
 Identities = 215/380 (57%), Positives = 290/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTARQVREAEERISALQEEMAEVL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+    +R++ + E  ++ LQ E   + 
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQHDPVLPQALRQSSARKPLPATLPRETRILPPAETVCPACGGSLNPLGCDVSEQLELI  152
            G   DP + ++LRQ+ +RKP+P +LPR+ + L PA   CP CGGSL+ LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFRVIETQRPKLACCKCDHIIQSPMPSKPIERSYAGSGLLARIVTAKFAEHMPHYRQS  212
             SAFRVI T R K AC +CD I+Q+P PS+PIER+ AG+GLLAR++T+K+AEH P Y QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWSGAVSELLEPLYDLLRQYVLMPGKVHTDDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+H+DD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQLPPAVWFAYSPDRKGVHPQQHLAGYSGILQADAYGGYNALYE  332
            +T+RLW YVR+DRNAGS L+PAVWFAYSPDRK++HPQ HLA +SG+LQADAY+G+N LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  DGRITEAACMAHARRKIHDVHVRTPTDITTEALKRIGELYAIEAEIRGSPADERLAVRKT  392
            +G ITEAAC AHARRKIHDVHVR P+ +T EAL +IG+LYAIEA+IRG PA++RLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  RTIALMQSLYDWIQSQMKVL  412
            +T +L++SL  W++ +MK L
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 75.2 bits (266),  Expect = 7e-15, Method: Compositional matrix adjust.
 Identities = 36/59 (62%), Positives = 49/59 (84%), Gaps = 0/59 (0%)

Query  463  LFAGSDSGGERAAVLYSLIGTCRLNGMDPETWLRYVLGNIQEWPVNQLRDLLPWNTGVT  521
            LF GS+ GGER+A+LYSLIGTC+LN++DPE+ LR VLG I +WPVN++ +LLPW  ++ 
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALP  459

163) XNC1_4274 in NC_014228


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  362 bits (1360),  Expect = 2e-101, Method: Compositional matrix adjust.
 Identities = 215/387 (56%), Positives = 293/387 (76%), Gaps = 7/387 (1%)

Query  15   LLREQMAANKILTENNRLLSQRVPSYTSEITRLKARVVKLQRMQFGQSSEKIRQKAERQI  74
            LL++++A +  L +    L +++++   EI +L+A++ KL+RM+FG  SEK+     R+I
Sbjct  11   LLKQRLAEQEALIHA---LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRI  63

Query  75   REVQAHISHLQEEMVDILGKQPDPALPPALRQSSSRKPLPATLPREIQLLLPAEKNCPEC  134
             +++A++++LQ E   + G+  DPA+  +LRQ+ +RKP+P +LPR+ + LLPA   CP+C
Sbjct  64   AQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  135  GGELHALGCDISEQLGIISNAFKVIETQRPKLACGRCDGIVQSPMPSKPIERSYAGPGLL  194
            GG L  LG D +EQL ++ +AF+VI T R K AC +CD IVQ+P PS+PIER+ AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  195  ARIVTAKFAEHMPLYRQSEIYNRQGVALSRATLGRWSGAVSELLEPLYDVLRQYVLMPGK  254
            AR++T+K+AEH PLY QSEIY RQGV LSR+ L+ W +A   LL PL + L+ YV+  GK
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  255  VHGDDIPVPVQAPGNGKTRTGRLWVYVRDDRNAGSVMPPAVWFAYSADRKGIHPQQPLAG  314
            +H+DD PV V  PGN KT+TGRLW YVR+DRNAGS ++PAVWFAYS+DRK+IHPQ  LA 
Sbjct  244  LHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLAC  303

Query  315  YSGVLQADAYGGYRSLYETGNITEAACMAHARRKIHDVHVRSPTAITTEAQKRIGELYAI  374
            +SGVLQADAY+G+  LY  G ITEAAC AHARRKIHDVHVR P+A+T EA  +IG+LYAI
Sbjct  304  FSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAI  363

Query  375  EAEIRGSPAEERLALRKARSAPLMQLL  401
            EA+IRG PAE+RLA R+ ++ PL++ L
Sbjct  364  EADIRGMPAEQRLAERQRKTKPLLKSL  390

164) BCAL1173 in NC_011000


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  361 bits (1358),  Expect = 4e-101, Method: Compositional matrix adjust.
 Identities = 240/503 (48%), Positives = 337/503 (67%), Gaps = 52/503 (10%)

Query  9    PDDINALRALLLERDAQVAELRKQLSSRALEIEHLKLTIAKLRRMQFGRKSEKLDLQIEQ  68
            +DDI  L+  L E++A +  L+ +LS+R  EI+HL+  + KLRRM+FG +SEK+  +I Q
Sbjct  6    SDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQ  65

Query  69   LELRLEDLQadegaadasa-apeaKRPRREGASRKPLPGHLEREERVHLPADDDCPDCGG  127
            +E  L+ LQ + ++  +    P  +RP R+  +RKP+P  L R+E+  LPA   CP+CGG
Sbjct  66   MEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGG  125

Query  128  QLKPLGEDIAEQLEYVRAHFRVIRHRRPKLACARCDRIVQAAAPSRPIDRGIPGPALLAH  187
             L  LGED AEQLE +R+ FRVIR  R K AC++CD IVQA+APSRPI+RGI+GP+LLA+
Sbjct  126  SLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLAR  185

Query  188  IAVSKFAYHLPLHRQAVMYARDGVEIDPGAMGYWMGSITALLAPLVDAVRRYTLACGKVH  247
            +  SK+A H PL  Q+ +Y+R+GVE+  + ++ W+++   LL+PL +A++ Y ++ GK+H
Sbjct  186  VLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLH  245

Query  248  ADDTPLPVLVPGNGRTKTGRLWVYVRDDRQSGSDEPPAAWFAYTPDRRGEHPQRHLADFA  307
            ADDTP+ VL+PGN +TKTGRLW YVR+DR++GS  +PA WFAY+PDR++ HPQ HLA F+
Sbjct  246  ADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFS  305

Query  308  GVLQADAFAGYAELYLDGRVQEAACMAHARRKIHDLHAVRPNAVTEEALRRIGALYKIEE  367
            GVLQADA+AG+ ELY +G + EAAC AHARRKIHD+H   P+A+TEEAL +IG LY IE 
Sbjct  306  GVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEA  365

Query  368  QIRGKPPDERRSVRQARAVPLLDDMKRWFEATLATLSAKSDTTKAIRYALNRWPALVYYC  427
            +IRG P+++R                         L+ +   TK++  +L+ W       
Sbjct  366  DIRGMPAEQR-------------------------LAERQRKTKPLLKSLESW-------  393

Query  428  SDGCTEIDNLIAERALRGVALGRRNYLFAGADSGGERAAAMYSLIGTARLNGLDPEAYLA  487
                           LR     + + LF G++ GGER+A +YSLIGT +LN++DPE+YL 
Sbjct  394  ---------------LRE----KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLR  434

Query  488  YVLERIADHPANRVDELLPWNVA  510
             VL  IAD P NRV ELLPW +A
Sbjct  435  HVLGVIADWPVNRVSELLPWRIA  457

165) BCAL2216 in NC_011000


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  361 bits (1358),  Expect = 4e-101, Method: Compositional matrix adjust.
 Identities = 240/503 (48%), Positives = 337/503 (67%), Gaps = 52/503 (10%)

Query  9    PDDINALRALLLERDAQVAELRKQLSSRALEIEHLKLTIAKLRRMQFGRKSEKLDLQIEQ  68
            +DDI  L+  L E++A +  L+ +LS+R  EI+HL+  + KLRRM+FG +SEK+  +I Q
Sbjct  6    SDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQ  65

Query  69   LELRLEDLQadegaadasa-apeaKRPRREGASRKPLPGHLEREERVHLPADDDCPDCGG  127
            +E  L+ LQ + ++  +    P  +RP R+  +RKP+P  L R+E+  LPA   CP+CGG
Sbjct  66   MEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGG  125

Query  128  QLKPLGEDIAEQLEYVRAHFRVIRHRRPKLACARCDRIVQAAAPSRPIDRGIPGPALLAH  187
             L  LGED AEQLE +R+ FRVIR  R K AC++CD IVQA+APSRPI+RGI+GP+LLA+
Sbjct  126  SLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLAR  185

Query  188  IAVSKFAYHLPLHRQAVMYARDGVEIDPGAMGYWMGSITALLAPLVDAVRRYTLACGKVH  247
            +  SK+A H PL  Q+ +Y+R+GVE+  + ++ W+++   LL+PL +A++ Y ++ GK+H
Sbjct  186  VLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLH  245

Query  248  ADDTPLPVLVPGNGRTKTGRLWVYVRDDRQSGSDEPPAAWFAYTPDRRGEHPQRHLADFA  307
            ADDTP+ VL+PGN +TKTGRLW YVR+DR++GS  +PA WFAY+PDR++ HPQ HLA F+
Sbjct  246  ADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFS  305

Query  308  GVLQADAFAGYAELYLDGRVQEAACMAHARRKIHDLHAVRPNAVTEEALRRIGALYKIEE  367
            GVLQADA+AG+ ELY +G + EAAC AHARRKIHD+H   P+A+TEEAL +IG LY IE 
Sbjct  306  GVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEA  365

Query  368  QIRGKPPDERRSVRQARAVPLLDDMKRWFEATLATLSAKSDTTKAIRYALNRWPALVYYC  427
            +IRG P+++R                         L+ +   TK++  +L+ W       
Sbjct  366  DIRGMPAEQR-------------------------LAERQRKTKPLLKSLESW-------  393

Query  428  SDGCTEIDNLIAERALRGVALGRRNYLFAGADSGGERAAAMYSLIGTARLNGLDPEAYLA  487
                           LR     + + LF G++ GGER+A +YSLIGT +LN++DPE+YL 
Sbjct  394  ---------------LRE----KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLR  434

Query  488  YVLERIADHPANRVDELLPWNVA  510
             VL  IAD P NRV ELLPW +A
Sbjct  435  HVLGVIADWPVNRVSELLPWRIA  457

166) BCAL3295 in NC_011000


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  361 bits (1358),  Expect = 4e-101, Method: Compositional matrix adjust.
 Identities = 240/503 (48%), Positives = 337/503 (67%), Gaps = 52/503 (10%)

Query  9    PDDINALRALLLERDAQVAELRKQLSSRALEIEHLKLTIAKLRRMQFGRKSEKLDLQIEQ  68
            +DDI  L+  L E++A +  L+ +LS+R  EI+HL+  + KLRRM+FG +SEK+  +I Q
Sbjct  6    SDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQ  65

Query  69   LELRLEDLQadegaadasa-apeaKRPRREGASRKPLPGHLEREERVHLPADDDCPDCGG  127
            +E  L+ LQ + ++  +    P  +RP R+  +RKP+P  L R+E+  LPA   CP+CGG
Sbjct  66   MEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGG  125

Query  128  QLKPLGEDIAEQLEYVRAHFRVIRHRRPKLACARCDRIVQAAAPSRPIDRGIPGPALLAH  187
             L  LGED AEQLE +R+ FRVIR  R K AC++CD IVQA+APSRPI+RGI+GP+LLA+
Sbjct  126  SLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLAR  185

Query  188  IAVSKFAYHLPLHRQAVMYARDGVEIDPGAMGYWMGSITALLAPLVDAVRRYTLACGKVH  247
            +  SK+A H PL  Q+ +Y+R+GVE+  + ++ W+++   LL+PL +A++ Y ++ GK+H
Sbjct  186  VLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLH  245

Query  248  ADDTPLPVLVPGNGRTKTGRLWVYVRDDRQSGSDEPPAAWFAYTPDRRGEHPQRHLADFA  307
            ADDTP+ VL+PGN +TKTGRLW YVR+DR++GS  +PA WFAY+PDR++ HPQ HLA F+
Sbjct  246  ADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFS  305

Query  308  GVLQADAFAGYAELYLDGRVQEAACMAHARRKIHDLHAVRPNAVTEEALRRIGALYKIEE  367
            GVLQADA+AG+ ELY +G + EAAC AHARRKIHD+H   P+A+TEEAL +IG LY IE 
Sbjct  306  GVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEA  365

Query  368  QIRGKPPDERRSVRQARAVPLLDDMKRWFEATLATLSAKSDTTKAIRYALNRWPALVYYC  427
            +IRG P+++R                         L+ +   TK++  +L+ W       
Sbjct  366  DIRGMPAEQR-------------------------LAERQRKTKPLLKSLESW-------  393

Query  428  SDGCTEIDNLIAERALRGVALGRRNYLFAGADSGGERAAAMYSLIGTARLNGLDPEAYLA  487
                           LR     + + LF G++ GGER+A +YSLIGT +LN++DPE+YL 
Sbjct  394  ---------------LRE----KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLR  434

Query  488  YVLERIADHPANRVDELLPWNVA  510
             VL  IAD P NRV ELLPW +A
Sbjct  435  HVLGVIADWPVNRVSELLPWRIA  457

167) BCAM0248 in NC_011001


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  361 bits (1358),  Expect = 4e-101, Method: Compositional matrix adjust.
 Identities = 240/503 (48%), Positives = 337/503 (67%), Gaps = 52/503 (10%)

Query  9    PDDINALRALLLERDAQVAELRKQLSSRALEIEHLKLTIAKLRRMQFGRKSEKLDLQIEQ  68
            +DDI  L+  L E++A +  L+ +LS+R  EI+HL+  + KLRRM+FG +SEK+  +I Q
Sbjct  6    SDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQ  65

Query  69   LELRLEDLQadegaadasa-apeaKRPRREGASRKPLPGHLEREERVHLPADDDCPDCGG  127
            +E  L+ LQ + ++  +    P  +RP R+  +RKP+P  L R+E+  LPA   CP+CGG
Sbjct  66   MEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGG  125

Query  128  QLKPLGEDIAEQLEYVRAHFRVIRHRRPKLACARCDRIVQAAAPSRPIDRGIPGPALLAH  187
             L  LGED AEQLE +R+ FRVIR  R K AC++CD IVQA+APSRPI+RGI+GP+LLA+
Sbjct  126  SLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLAR  185

Query  188  IAVSKFAYHLPLHRQAVMYARDGVEIDPGAMGYWMGSITALLAPLVDAVRRYTLACGKVH  247
            +  SK+A H PL  Q+ +Y+R+GVE+  + ++ W+++   LL+PL +A++ Y ++ GK+H
Sbjct  186  VLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLH  245

Query  248  ADDTPLPVLVPGNGRTKTGRLWVYVRDDRQSGSDEPPAAWFAYTPDRRGEHPQRHLADFA  307
            ADDTP+ VL+PGN +TKTGRLW YVR+DR++GS  +PA WFAY+PDR++ HPQ HLA F+
Sbjct  246  ADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFS  305

Query  308  GVLQADAFAGYAELYLDGRVQEAACMAHARRKIHDLHAVRPNAVTEEALRRIGALYKIEE  367
            GVLQADA+AG+ ELY +G + EAAC AHARRKIHD+H   P+A+TEEAL +IG LY IE 
Sbjct  306  GVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEA  365

Query  368  QIRGKPPDERRSVRQARAVPLLDDMKRWFEATLATLSAKSDTTKAIRYALNRWPALVYYC  427
            +IRG P+++R                         L+ +   TK++  +L+ W       
Sbjct  366  DIRGMPAEQR-------------------------LAERQRKTKPLLKSLESW-------  393

Query  428  SDGCTEIDNLIAERALRGVALGRRNYLFAGADSGGERAAAMYSLIGTARLNGLDPEAYLA  487
                           LR     + + LF G++ GGER+A +YSLIGT +LN++DPE+YL 
Sbjct  394  ---------------LRE----KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLR  434

Query  488  YVLERIADHPANRVDELLPWNVA  510
             VL  IAD P NRV ELLPW +A
Sbjct  435  HVLGVIADWPVNRVSELLPWRIA  457

168) XNC1_2014 in NC_014228


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  360 bits (1352),  Expect = 1e-100, Method: Compositional matrix adjust.
 Identities = 215/387 (56%), Positives = 293/387 (76%), Gaps = 7/387 (1%)

Query  15   LLREQMAANKILAGNNRLLSQRVASYASEITRLKARVVKLQRMQFGQSSEKIRQKAERQI  74
            LL++++A +  L    + L +++++   EI +L+A++ KL+RM+FG  SEK+     R+I
Sbjct  11   LLKQRLAEQEALI---HALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRI  63

Query  75   REVQAHISHLQEEMVDIQGKQPDPALPPALRQSSSRKPLPATLPREIQLLLPAEKNCPEC  134
             +++A++++LQ E   + G+  DPA+  +LRQ+ +RKP+P +LPR+ + LLPA   CP+C
Sbjct  64   AQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  135  GGELHALGCDISEQLGIISSAFKVIETQRPKLACGRCDGIVQSPMPSKPIERSYAGPGLL  194
            GG L  LG D +EQL ++ SAF+VI T R K AC +CD IVQ+P PS+PIER+ AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  195  ARIVTAKFAEHMPLYRQSEIYNRQGVALSRATLGRWSGAVSELLELLYDVLRQYVLMPGK  254
            AR++T+K+AEH PLY QSEIY RQGV LSR+ L+ W +A   LL  L + L+ YV+  GK
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  255  VHGDDIPVPVQAPGNGKTRTGRLWVYVRDDRNAGSVMPPAVWFAYSADRKGVHPQQHLAG  314
            +H+DD PV V  PGN KT+TGRLW YVR+DRNAGS ++PAVWFAYS+DRK++HPQ HLA 
Sbjct  244  LHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLAC  303

Query  315  YSGVLQADAYGGYRALYETGNITEAACMAHARRKIHDVHVRSPTAITTEAQKRIGELYAI  374
            +SGVLQADAY+G+  LY  G ITEAAC AHARRKIHDVHVR P+A+T EA  +IG+LYAI
Sbjct  304  FSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAI  363

Query  375  EAEIRGSPAEERLALRKARSAPLMQLL  401
            EA+IRG PAE+RLA R+ ++ PL++ L
Sbjct  364  EADIRGMPAEQRLAERQRKTKPLLKSL  390


 Score = 75.5 bits (267),  Expect = 6e-15, Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (82%), Gaps = 0/60 (0%)

Query  463  LFAGSDSGGERAAILYSLIGSCRLNGVEPEAWLRYTISHIADWPSNKVHELLPWKLNLTN  522
            LF GS+ GGER+A+LYSLIG+C+LN+V+PE+ LR  ++ IADWP N+V ELLPW++ L  
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

169) XNC1_2350 in NC_014228


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  360 bits (1352),  Expect = 1e-100, Method: Compositional matrix adjust.
 Identities = 215/387 (56%), Positives = 291/387 (76%), Gaps = 7/387 (1%)

Query  15   LLREQMAANKILTENNRLLSPRVASYASEISRLKARVVKLQRMQFGQSSEKIRQKAERQI  74
            LL++++A +  L +    L  ++++   EI +L+A++ KL+RM+FG  SEK+     R+I
Sbjct  11   LLKQRLAEQEALIHA---LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRI  63

Query  75   REVQAHISHLQEEMADILGKQPDPALPPVLRQSSSRKPLPATLPREIQLLLPAEKNCPEC  134
             +++A++++LQ E   + G+  DPA+   LRQ+ +RKP+P +LPR+ + LLPA   CP+C
Sbjct  64   AQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  135  GGELHTLGCDISEQLGIISSAFKVIETQRPKLACGRCDGIVQSPMPSKPIERSYASPGLL  194
            GG L  LG D +EQL ++ SAF+VI T R K AC +CD IVQ+P PS+PIER+ A+PGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  195  ARIVTAKFAEHMPLYRQSEIYNRQGVALSRATLGRWSGAVSELLEPLYDVLRQYVLMPGK  254
            AR++T+K+AEH PLY QSEIY RQGV LSR+ L+ W +A   LL PL + L+ YV+  GK
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  255  VHGDDIPVPVQAPGNGKTRTGRLWVYVRDDRNAGSVMPPAVWFAYSADRKGIHPQQPLAG  314
            +H+DD PV V  PGN KT+TGRLW YVR+DRNAGS ++PAVWFAYS+DRK+IHPQ  LA 
Sbjct  244  LHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLAC  303

Query  315  YSGVLQADAYGGYRALYETGNITEAACMAHARRKIHDVHVRSPTAITTEAQKRIGELYAI  374
            +SGVLQADAY+G+  LY  G ITEAAC AHARRKIHDVHVR P+A+T EA  +IG+LYAI
Sbjct  304  FSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAI  363

Query  375  EAEIRGSPAEERLALRKARSAPLMQLL  401
            EA+IRG PAE+RLA R+ ++ PL++ L
Sbjct  364  EADIRGMPAEQRLAERQRKTKPLLKSL  390


 Score = 75.7 bits (268),  Expect = 5e-15, Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (82%), Gaps = 0/60 (0%)

Query  463  LFAGSDSGGERAAILYSLIGSCRLNGVEPEAWLRYTISHIADWPSNKVHELLPWKLNLTN  522
            LF GS+ GGER+A+LYSLIG+C+LN+V+PE+ LR  ++ IADWP N+V ELLPW++ L  
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

170) XNC1_2925 in NC_014228


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  360 bits (1352),  Expect = 1e-100, Method: Compositional matrix adjust.
 Identities = 215/387 (56%), Positives = 290/387 (75%), Gaps = 7/387 (1%)

Query  15   LLREQMAANKILTENNRLLSPRVASYASEISRLKARVVKLQRMQFGQSSEKIRQKAERQI  74
            LL++++A +  L +    L  ++++   EI +L+A++ KL+RM+FG  SEK+     R+I
Sbjct  11   LLKQRLAEQEALIHA---LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRI  63

Query  75   REVQAHISHLQEEMADILGKQPDPALPPVLRQSSSRKPLPATLPREIQLLLPAEKNCPEC  134
             +++A++++LQ E   + G+  DPA+   LRQ+ +RKP+P +LPR+ + LLPA   CP+C
Sbjct  64   AQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  135  GGELHTLGCDISEQLGIISSAFKVIETQRPKLACGRCDGIVQSPMPSKPIERSYAGPGLL  194
            GG L  LG D +EQL ++ SAF+VI T R K AC +CD IVQ+P PS+PIER+ AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  195  ARIVTAKFAEHMPLYRQSEIYNRQGVALSRATLGRWSGAVSELLERLYDVLRQYVLMPGK  254
            AR++T+K+AEH PLY QSEIY RQGV LSR+ L+ W +A   LL  L + L+ YV+  GK
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  255  VHGDDIPVPVQAPGNGKTRTGRLWVYVRDDRNAGSVMPPAVWFAYSADRKGIHPQQPLAG  314
            +H+DD PV V  PGN KT+TGRLW YVR+DRNAGS ++PAVWFAYS+DRK+IHPQ  LA 
Sbjct  244  LHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLAC  303

Query  315  YSGVLQADAYGGYRALYETGNITEAACMAHARRKIHDVHVRSPTAITTEAQKRIGELYAI  374
            +SGVLQADAY+G+  LY  G ITEAAC AHARRKIHDVHVR P+A+T EA  +IG+LYAI
Sbjct  304  FSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAI  363

Query  375  EAEIRGSPAEERLALRKARSAPLMQLL  401
            EA+IRG PAE+RLA R+ ++ PL++ L
Sbjct  364  EADIRGMPAEQRLAERQRKTKPLLKSL  390

171) Bxe_A3778 in NC_007951


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  360 bits (1353),  Expect = 8e-101, Method: Compositional matrix adjust.
 Identities = 238/487 (49%), Positives = 326/487 (67%), Gaps = 54/487 (11%)

Query  40   VTTLQKTLSDRALEIEHLKLWIAKLQRMQFGRKSEKIDRQIEQLELRLEDLQADDGAAT-  98
            + +LQ  LS+R  EI+HL+  + KL+RM+FG +SEK+ R+I Q+E  L+ LQ + ++ T 
Sbjct  23   IHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTLTG  82

Query  99   -VDAPTRPRSEAGKPTGRKPLPEHLPREDVVHHPDDACCPQCGGALGDLGEDVSEQLDYV  157
             V  P+  R+     T RKP+PE LPR++    P  +CCP+CGG+L+ LGED +EQL+ +
Sbjct  83   RVYDPAVQRPLRQTRT-RKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  158  PGHWRVIRHRRLKKACSCCDCIVQAAAPSRPIDRGMPGPGLLAHVLVAKFCDHLPLYRQS  217
             +  RVIR  R K AC+ CD IVQA+APSRPI+RG++GPGLLA+VL +K+ +H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  218  VIYARDGVELSRSTLADWVGQCSALLRPLVEVVRRYVMAAPKIHTDDTPVPVLEPGNGKT  277
             IY+R+GVELSRS L++WV+ C  LL PL E ++ YVM+  K+H+DDTPV VL PGN KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  278  RTARLWTYVRDDRPAGSKDAPAVWFAYSPTRAGEYPQAHLKDFRGTLQADAFAGYNAIYE  337
            +T+RLW+YVR+DR AGS  APAVWFAYSP R +  PQ+HL  F G LQADA+AG+N +Y 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  338  RGDVREAACMAHARRKFHDLFVARRNEVNTEALRRIGELYAIEAAIRGKPPDERRRVRQE  397
             G++ EAAC AHARRK+HD+ V   + +  EAL +IG+LYAIEA IRG  P E+R     
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGM-PAEQR-----  375

Query  398  QARPLLAAFEIWLRSTLGAVSQKGDTAKAINYALNQWAALTLYVDDGAVEIDNNAAERAL  457
                               ++++   +K++  +L+ W                      L
Sbjct  376  -------------------LAERQRKTKPLLKSLESW----------------------L  394

Query  458  RAVALGRKNFLHFGSDSGGERGAAIYTLVGTAKLNGLDPEAYLRHVIARIAEHPVNRVDE  517
            R     + + L FGS+ GGERGA +Y+L+GT KLN++DPE+YLRHV++ IA+ PVNRV E
Sbjct  395  RE----KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSE  450

Query  518  LLPWVVA  524
            LLPW +A
Sbjct  451  LLPWRIA  457

172) UM146_21790 in NC_017632


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  357 bits (1341),  Expect = 7e-100, Method: Compositional matrix adjust.
 Identities = 225/367 (62%), Positives = 295/367 (81%), Gaps = 4/367 (1%)

Query  60   HLRAQIEKLRRMLFGTRSEKLRREVEQAEALLNQRRQDSDRYSGWEDDPQVPRQLRQSrh  119
            HL+AQ++KLRRM FG+RSEK+ R + Q EA LN+ +++SD  +G+  DP V R LRQ+R 
Sbjct  39   HLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRT  98

Query  120  rrplpahlprEIHRLeseesccpecgseLDYLGEVSAEQLELVSSALKVIRTVRVKKACT  179
            R+P+P  LPR+  RL +  +CCP+CG+ L YLGE +AEQLEL+ SA++VIRTVR K ACT
Sbjct  99   RKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACT  158

Query  180  KCDCIVEAPAPSRPIERGIAGSGLLARVLTGKYCEHLPLYRQSEIFARQGAELSRALLSN  239
            +CD IV+APAPSRPIERGIAG+GLLARVLT+KY EH PLY QSEI++RQG ELSR+LLS 
Sbjct  159  QCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSG  218

Query  240  WVDACCQLMTPLNDALYRYVMNTRKVHTDDIPVKVLAPGRKKAKTGRIWTYVRDDRNAGS  299
            WVDACC+L++PL++AL  YVM   K+H+DD PV+VL PG KK+KTGR+W+YVR+DRNAGS
Sbjct  219  WVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGS  278

Query  300  SEPPAVWFAYSPDRQGKHPVQHLRPFRGILQADAFSGYDRLFSAEREGGALTEVACWAHA  359
            + +PAVWFAYSPDR++ HP  HL  F G+LQADA++G++ L+      G++TE ACWAHA
Sbjct  279  ALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR----NGGITEAACWAHA  334

Query  360  RRKIHDVYISSKSTTAEEALKRISELYAIEDEIRGLPESERLAARQQRSKALLTSLHEWM  419
            RRKIHDV +   S+ +EEAL +I++LYAIE +IRG+P  +RLA RQ+++K+LL SL+ W+
Sbjct  335  RRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWL  394

Query  420  VEKNGTL  426
             EK  TL
Sbjct  395  REKMKTL  401

173) UTI89_C4915 in NC_007946


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  357 bits (1341),  Expect = 7e-100, Method: Compositional matrix adjust.
 Identities = 225/367 (62%), Positives = 295/367 (81%), Gaps = 4/367 (1%)

Query  60   HLRAQIEKLRRMLFGTRSEKLRREVEQAEALLNQRRQDSDRYSGWEDDPQVPRQLRQSrh  119
            HL+AQ++KLRRM FG+RSEK+ R + Q EA LN+ +++SD  +G+  DP V R LRQ+R 
Sbjct  39   HLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRT  98

Query  120  rrplpahlprEIHRLeseesccpecgseLDYLGEVSAEQLELVSSALKVIRTVRVKKACT  179
            R+P+P  LPR+  RL +  +CCP+CG+ L YLGE +AEQLEL+ SA++VIRTVR K ACT
Sbjct  99   RKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACT  158

Query  180  KCDCIVEAPAPSRPIERGIAGSGLLARVLTGKYCEHLPLYRQSEIFARQGAELSRALLSN  239
            +CD IV+APAPSRPIERGIAG+GLLARVLT+KY EH PLY QSEI++RQG ELSR+LLS 
Sbjct  159  QCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSG  218

Query  240  WVDACCQLMTPLNDALYRYVMNTRKVHTDDIPVKVLAPGRKKAKTGRIWTYVRDDRNAGS  299
            WVDACC+L++PL++AL  YVM   K+H+DD PV+VL PG KK+KTGR+W+YVR+DRNAGS
Sbjct  219  WVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGS  278

Query  300  SEPPAVWFAYSPDRQGKHPVQHLRPFRGILQADAFSGYDRLFSAEREGGALTEVACWAHA  359
            + +PAVWFAYSPDR++ HP  HL  F G+LQADA++G++ L+      G++TE ACWAHA
Sbjct  279  ALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR----NGGITEAACWAHA  334

Query  360  RRKIHDVYISSKSTTAEEALKRISELYAIEDEIRGLPESERLAARQQRSKALLTSLHEWM  419
            RRKIHDV +   S+ +EEAL +I++LYAIE +IRG+P  +RLA RQ+++K+LL SL+ W+
Sbjct  335  RRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWL  394

Query  420  VEKNGTL  426
             EK  TL
Sbjct  395  REKMKTL  401

174) pRALTA_0421 in NC_010529


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  356 bits (1336),  Expect = 2e-99, Method: Compositional matrix adjust.
 Identities = 235/510 (47%), Positives = 333/510 (66%), Gaps = 56/510 (10%)

Query  9    DDIEALKALLLERDARIGHLQDVVESQKAATATDKAEIEHLKLLIAKLRRMQFGRRSEKl  68
            +DI +   +LL +  R+++ + ++++ +   +    EI+HL+  + KLRRM+FG RSEK+
Sbjct  2    NDISSDDIFLLKQ--RLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV  59

Query  69   drqieqlelrleeleadeGAAPIEIHRTP--RTAPEQVQRKPLPEHLPREFQTHWPESRD  126
             R+I Q+E  L+ L+ + ++    +   +  R   +   RKP+PE LPR+ +   P +  
Sbjct  60   SRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAP-  118

Query  127  TCTACGAPMKQLGEDVSEQLEYVPASFRVIRHVRPKLACSCCDHIAQAAAPSRPIERGMA  186
             C  CG+++  LGED +EQLE + ++FRVIR VR K AC+ CD I QA+APSRPIERG+A
Sbjct  119  CCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIA  178

Query  187  GPGLLAHVLVAKFADHLPLYRQSVIYAREGVELDRSLLAKWVGHSAALLQPLVDTLRRHV  246
            GPGLLA+VL +K+A+H PLY QS IY+R+GVEL RSLL+ WV+    LL PL ++L+  V
Sbjct  179  GPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYV  238

Query  247  MAATKLHADDTPVPVLAPGNGKTKTGRLWVYVRDDRTSGDATPPAVWFAYTPDRKGIHPQ  306
            M+  KLHADDTPV VL PGN KTKTGRLW YVR+DR +G A +PAVWFAY+PDRK+IHPQ
Sbjct  239  MTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQ  298

Query  307  QHLESFNGTLQADAYGGYQAIYETGRVAEAACWAHARRQFYELYAARPNSLNTEALERIG  366
             HL  F+G LQADAY+G++ +Y  G ++EAACWAHARR++ ++    P++L  EALE+IG
Sbjct  299  THLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIG  358

Query  367  ALYKIEEQIRGKPPDVRQAYRQAQARPLLDQLHAWLRATLETLSRKSDTSRAILYALNRW  426
             LY IE +IRG P++ R                         L+ +   ++++L +L+ W
Sbjct  359  QLYAIEADIRGMPAEQR-------------------------LAERQRKTKPLLKSLESW  393

Query  427  EALTRYCDDGRLEIDNLPVERALRGVAIGRRNYLFAGADSGGERAAAIYSLIGTAKLNGV  486
                                  LR     + + LF G++ GGER+A +YSLIGT KLN+V
Sbjct  394  ----------------------LRE----KMKTLFFGSGHGGERGALLYSLIGTCKLNDV  427

Query  487  DPEAYLRFVLARIADHPINRVDELMPWVVT  516
            DPE+YLR VL+ IAD P+NRV EL+PW ++
Sbjct  428  DPESYLRHVLGVIADWPVNRVSELLPWRIA  457

175) pRALTA_0519 in NC_010529


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  356 bits (1336),  Expect = 2e-99, Method: Compositional matrix adjust.
 Identities = 235/510 (47%), Positives = 333/510 (66%), Gaps = 56/510 (10%)

Query  9    DDIEALKALLLERDARIGHLQDVVESQKAATATDKAEIEHLKLLIAKLRRMQFGRRSEKl  68
            +DI +   +LL +  R+++ + ++++ +   +    EI+HL+  + KLRRM+FG RSEK+
Sbjct  2    NDISSDDIFLLKQ--RLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV  59

Query  69   drqieqlelrleeleadeGAAPIEIHRTP--RTAPEQVQRKPLPEHLPREFQTHWPESRD  126
             R+I Q+E  L+ L+ + ++    +   +  R   +   RKP+PE LPR+ +   P +  
Sbjct  60   SRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAP-  118

Query  127  TCTACGAPMKQLGEDVSEQLEYVPASFRVIRHVRPKLACSCCDHIAQAAAPSRPIERGMA  186
             C  CG+++  LGED +EQLE + ++FRVIR VR K AC+ CD I QA+APSRPIERG+A
Sbjct  119  CCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIA  178

Query  187  GPGLLAHVLVAKFADHLPLYRQSVIYAREGVELDRSLLAKWVGHSAALLQPLVDTLRRHV  246
            GPGLLA+VL +K+A+H PLY QS IY+R+GVEL RSLL+ WV+    LL PL ++L+  V
Sbjct  179  GPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYV  238

Query  247  MAATKLHADDTPVPVLAPGNGKTKTGRLWVYVRDDRTSGDATPPAVWFAYTPDRKGIHPQ  306
            M+  KLHADDTPV VL PGN KTKTGRLW YVR+DR +G A +PAVWFAY+PDRK+IHPQ
Sbjct  239  MTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQ  298

Query  307  QHLESFNGTLQADAYGGYQAIYETGRVAEAACWAHARRQFYELYAARPNSLNTEALERIG  366
             HL  F+G LQADAY+G++ +Y  G ++EAACWAHARR++ ++    P++L  EALE+IG
Sbjct  299  THLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIG  358

Query  367  ALYKIEEQIRGKPPDVRQAYRQAQARPLLDQLHAWLRATLETLSRKSDTSRAILYALNRW  426
             LY IE +IRG P++ R                         L+ +   ++++L +L+ W
Sbjct  359  QLYAIEADIRGMPAEQR-------------------------LAERQRKTKPLLKSLESW  393

Query  427  EALTRYCDDGRLEIDNLPVERALRGVAIGRRNYLFAGADSGGERAAAIYSLIGTAKLNGV  486
                                  LR     + + LF G++ GGER+A +YSLIGT KLN+V
Sbjct  394  ----------------------LRE----KMKTLFFGSGHGGERGALLYSLIGTCKLNDV  427

Query  487  DPEAYLRFVLARIADHPINRVDELMPWVVT  516
            DPE+YLR VL+ IAD P+NRV EL+PW ++
Sbjct  428  DPESYLRHVLGVIADWPVNRVSELLPWRIA  457

176) pRALTA_0535 in NC_010529


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  356 bits (1336),  Expect = 2e-99, Method: Compositional matrix adjust.
 Identities = 235/510 (47%), Positives = 333/510 (66%), Gaps = 56/510 (10%)

Query  9    DDIEALKALLLERDARIGHLQDVVESQKAATATDKAEIEHLKLLIAKLRRMQFGRRSEKl  68
            +DI +   +LL +  R+++ + ++++ +   +    EI+HL+  + KLRRM+FG RSEK+
Sbjct  2    NDISSDDIFLLKQ--RLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV  59

Query  69   drqieqlelrleeleadeGAAPIEIHRTP--RTAPEQVQRKPLPEHLPREFQTHWPESRD  126
             R+I Q+E  L+ L+ + ++    +   +  R   +   RKP+PE LPR+ +   P +  
Sbjct  60   SRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAP-  118

Query  127  TCTACGAPMKQLGEDVSEQLEYVPASFRVIRHVRPKLACSCCDHIAQAAAPSRPIERGMA  186
             C  CG+++  LGED +EQLE + ++FRVIR VR K AC+ CD I QA+APSRPIERG+A
Sbjct  119  CCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIA  178

Query  187  GPGLLAHVLVAKFADHLPLYRQSVIYAREGVELDRSLLAKWVGHSAALLQPLVDTLRRHV  246
            GPGLLA+VL +K+A+H PLY QS IY+R+GVEL RSLL+ WV+    LL PL ++L+  V
Sbjct  179  GPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYV  238

Query  247  MAATKLHADDTPVPVLAPGNGKTKTGRLWVYVRDDRTSGDATPPAVWFAYTPDRKGIHPQ  306
            M+  KLHADDTPV VL PGN KTKTGRLW YVR+DR +G A +PAVWFAY+PDRK+IHPQ
Sbjct  239  MTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQ  298

Query  307  QHLESFNGTLQADAYGGYQAIYETGRVAEAACWAHARRQFYELYAARPNSLNTEALERIG  366
             HL  F+G LQADAY+G++ +Y  G ++EAACWAHARR++ ++    P++L  EALE+IG
Sbjct  299  THLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIG  358

Query  367  ALYKIEEQIRGKPPDVRQAYRQAQARPLLDQLHAWLRATLETLSRKSDTSRAILYALNRW  426
             LY IE +IRG P++ R                         L+ +   ++++L +L+ W
Sbjct  359  QLYAIEADIRGMPAEQR-------------------------LAERQRKTKPLLKSLESW  393

Query  427  EALTRYCDDGRLEIDNLPVERALRGVAIGRRNYLFAGADSGGERAAAIYSLIGTAKLNGV  486
                                  LR     + + LF G++ GGER+A +YSLIGT KLN+V
Sbjct  394  ----------------------LRE----KMKTLFFGSGHGGERGALLYSLIGTCKLNDV  427

Query  487  DPEAYLRFVLARIADHPINRVDELMPWVVT  516
            DPE+YLR VL+ IAD P+NRV EL+PW ++
Sbjct  428  DPESYLRHVLGVIADWPVNRVSELLPWRIA  457

177) Pvag_pPag20143 in NC_014563


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  353 bits (1326),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 215/393 (55%), Positives = 289/393 (74%), Gaps = 4/393 (1%)

Query  20   QRSLEQMAEYNRLLSRRVAAYASEINRLKALVAKLQRMQFGKSSEKLREKTARQVREAEE  79
            ++ L +     + L  +++    EI++L+A + KL+RM+FG  SEK+    +R++ + E 
Sbjct  13   KQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEA  68

Query  80   RISGLQEEMAEVLGEQHDPVLPQPLRQSSARKPLPASLPRETRILPPEETACPACGGELS  139
             ++ LQ E   + G   DP + +PLRQ+ +RKP+P SLPR+ + L P    CP CGG LS
Sbjct  69   DLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLS  128

Query  140  ALGCDVSEQLELISSAFRVIETQRPKLACCKCDHIVQLPMPSKPIERSYAGPGLLARIVT  199
             LG D +EQLEL+ SAFRVI T R K AC +CD IVQ P PS+PIER+ AGPGLLAR++T
Sbjct  129  YLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLT  188

Query  200  AKFAENTPHYRQSEIYRRQGVELSRATLGRWSGAVSELLEPLYDLLRQYVLMPGKVHTDD  259
            +K+AE+TP Y QSEIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+H+DD
Sbjct  189  SKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADD  248

Query  260  IPVPVQEPGSGKTRTARLWVYVRDDRNARPQLPPAVWFAYSPDRKGEHPQQHLSGYRGIL  319
             PV V  PG+ KT+T+RLW YVR+DRNA + L+PAVWFAYSPDRK+ HPQ HL+ + G+L
Sbjct  249  TPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVL  308

Query  320  QADAYGGYNALYETGHITEAACMAHARRKIHDVHVRMPTAVTTEALRRIGELYAIEAEIR  379
            QADAY+G+N LY  G ITEAAC AHARRKIHDVHVR+P+A+T EAL +IG+LYAIEA+IR
Sbjct  309  QADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIR  368

Query  380  GSPADKRLAVRKARTVLLMQSLYDWIQVQIKVL  412
            G PA++RLA R+ +T  L++SL  W++ ++K L
Sbjct  369  GMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score = 78.9 bits (280),  Expect = 6e-16, Method: Compositional matrix adjust.
 Identities = 37/60 (62%), Positives = 50/60 (84%), Gaps = 0/60 (0%)

Query  463  LFAGSDRGGERAAVLYSLVGTCRLNSVEPEAWLRYVLSHIQDWPVNRLRDLLPWKANLTS  522
            LF GS++GGER+A+LYSL+GTC+LN V+PE+ LR VL+ I DWPVNR+ +LLPW+  L +
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

178) UMNK88_pIncI148 in NC_017642


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  351 bits (1318),  Expect = 5e-98, Method: Compositional matrix adjust.
 Identities = 216/380 (57%), Positives = 286/380 (76%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRPEEECCPACGGDLSPLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKLACCRCDHIVQATVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K AC +CD IVQA  PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSEMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRVVYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  +Y 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYAIEAEVRGCTaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R+P+ +T EAL++IG+LYAIEA++RG  AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQTQMKTL  412
            ++ PL++SL  W++ +MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.3 bits (274),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 36/61 (60%), Positives = 49/61 (81%), Gaps = 0/61 (0%)

Query  463  LFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLTS  522
            LF GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L +
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

179) BUPH_06780 in NC_018695


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  350 bits (1313),  Expect = 1e-97, Method: Compositional matrix adjust.
 Identities = 210/400 (53%), Positives = 285/400 (72%), Gaps = 6/400 (1%)

Query  36   QETVDSQQAALASRTAEVEHLKLLIAKLRRMQFGRKSEKLDHQIeqlelrleeleadeGA  95
            +  +++ Q  L++R  E++HL+  + KLRRM+FG +SEK+ ++I Q+E  L+ L+ + ++
Sbjct  20   EALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDT  79

Query  96   APVEI--PKTPRKALEQAPRKPLPEHLPREIRTHLPESAGKCTQCGGEMKSLGEDVAEQL  153
                +  P   R   +   RKP+PE LPR+ +  LP ++  C +CGG +  LGED AEQL
Sbjct  80   LTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPC-CPNCGGSLSYLGEDTAEQL  138

Query  154  EYVPASFRVIRHVRPKFACVCCDHIAQAPAPSRPIERGLAGPGLLAHVLVSKFADHVPLY  213
            E + ++FRVIR VR K AC  CD I QAPAPSRPIERG+AGPGLLA+VL SK+A+H PLY
Sbjct  139  ELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLY  198

Query  214  RQSVMYAREGVELDRSLLAKWVGHAATLLQPLVETLRRHVMLATKLHADDTPVPVLAPGN  273
             QS +Y+R+GVEL RSLL+ WV+    LL PL E+L+  VM   KLHADDTPV VL PGN
Sbjct  199  CQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGN  258

Query  274  GKTKTGRLWVYVRDDRASADMTPPAVWFAYTPDRKSIHPQQHLGSFNGTLQADAYGGYQA  333
             KTKTGRLW YVR+DR ++   +PAVWFAY+PDRKSIHPQ HL+ F+G LQADAY+G++ 
Sbjct  259  KKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNE  318

Query  334  IYETGRVTEAACWAHARRQFYELHAARPNALNTEALERIGALYRIEETIRGKPPDQRSAH  393
            +Y  G +TEAACWAHARR++ ++H   P+AL  EALE+IG LY IE  IRG P++QR A+
Sbjct  319  LYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAE  378

Query  394  RQAHARPLLDQFHAWLTTTLETL---SRKSDTSRRILYAL  430
            RQ  ++PLL  +++WL   + TL   S  ++    +LY+L
Sbjct  379  RQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418

180) BUPH_06781 in NC_018695


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  350 bits (1313),  Expect = 1e-97, Method: Compositional matrix adjust.
 Identities = 210/400 (53%), Positives = 285/400 (72%), Gaps = 6/400 (1%)

Query  36   QETVDSQQAALASRTAEVEHLKLLIAKLRRMQFGRKSEKLDHQIeqlelrleeleadeGA  95
            +  +++ Q  L++R  E++HL+  + KLRRM+FG +SEK+ ++I Q+E  L+ L+ + ++
Sbjct  20   EALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDT  79

Query  96   APVEI--PKTPRKALEQAPRKPLPEHLPREIRTHLPESAGKCTQCGGEMKSLGEDVAEQL  153
                +  P   R   +   RKP+PE LPR+ +  LP ++  C +CGG +  LGED AEQL
Sbjct  80   LTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPC-CPNCGGSLSYLGEDTAEQL  138

Query  154  EYVPASFRVIRHVRPKFACVCCDHIAQAPAPSRPIERGLAGPGLLAHVLVSKFADHVPLY  213
            E + ++FRVIR VR K AC  CD I QAPAPSRPIERG+AGPGLLA+VL SK+A+H PLY
Sbjct  139  ELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLY  198

Query  214  RQSVMYAREGVELDRSLLAKWVGHAATLLQPLVETLRRHVMLATKLHADDTPVPVLAPGN  273
             QS +Y+R+GVEL RSLL+ WV+    LL PL E+L+  VM   KLHADDTPV VL PGN
Sbjct  199  CQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGN  258

Query  274  GKTKTGRLWVYVRDDRASADMTPPAVWFAYTPDRKSIHPQQHLGSFNGTLQADAYGGYQA  333
             KTKTGRLW YVR+DR ++   +PAVWFAY+PDRKSIHPQ HL+ F+G LQADAY+G++ 
Sbjct  259  KKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNE  318

Query  334  IYETGRVTEAACWAHARRQFYELHAARPNALNTEALERIGALYRIEETIRGKPPDQRSAH  393
            +Y  G +TEAACWAHARR++ ++H   P+AL  EALE+IG LY IE  IRG P++QR A+
Sbjct  319  LYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAE  378

Query  394  RQAHARPLLDQFHAWLTTTLETL---SRKSDTSRRILYAL  430
            RQ  ++PLL  +++WL   + TL   S  ++    +LY+L
Sbjct  379  RQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418

181) EC042_4588 in NC_017626


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  350 bits (1315),  Expect = 9e-98, Method: Compositional matrix adjust.
 Identities = 231/367 (63%), Positives = 295/367 (81%), Gaps = 4/367 (1%)

Query  60   HLRAQIEKLRRMLFGTRSEKLRREVEQAEALLKQREQESDRYSGREDDPLVPRQLRQSrh  119
            HL+AQ++KLRRM FG+RSEK+ R + Q EA L++ ++ESD  +GR  DP V R LRQ+R 
Sbjct  39   HLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRT  98

Query  120  rrplpahlprEIYRLepeesccpecggeLDYLGEVSAEQLELVSSALKVIRTERVKKACT  179
            R+P+P  LPR+  RL P  +CCP+CGG L YLGE +AEQLEL+ SA++VIRT R K ACT
Sbjct  99   RKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACT  158

Query  180  KCDCIVEAPAPSRPIERGIAGPGLLARVLTGKYCEHLPLYRQSEIFARQGVELSRALLSN  239
            +CD IV+APAPSRPIERGIAGPGLLARVLT+KY EH PLY QSEI++RQGVELSR+LLS 
Sbjct  159  QCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSG  218

Query  240  WVDACCQLMTPLNDALYSYVMNTRKVHTDDTPVKVLAPGRKKAKTGYIWTYVRDDRNAGS  299
            WVDACC+L++PL++AL +YVM   K+H+DDTPV+VL PG KK+KTG +W+YVR+DRNAGS
Sbjct  219  WVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGS  278

Query  300  PEPPAVWFAYSPDHQGKHPEQHLRPFRGILQADAFAGYDRLFSAEREGGALTEAGCWAHA  359
            + +PAVWFAYSPD+++ HP+ HL  F G+LQADA+AG++ L+      G++TEA+CWAHA
Sbjct  279  ALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR----NGGITEAACWAHA  334

Query  360  RRKIHDVYISTKSATAEEALKLIGELYAIEHEIRGLPVSERLAVRQMQSKPLLTSLYKLM  419
            RRKIHDV +   SA +EEAL  IG+LYAIE +IRG+P  +RLA RQ ++KPLL SL   +
Sbjct  335  RRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWL  394

Query  420  QEKEHTL  426
            +EK  TL
Sbjct  395  REKMKTL  401

182) EC55989_3274 in NC_011748


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  350 bits (1315),  Expect = 9e-98, Method: Compositional matrix adjust.
 Identities = 231/367 (63%), Positives = 295/367 (81%), Gaps = 4/367 (1%)

Query  60   HLRAQIEKLRRMLFGTRSEKLRREVEQAEALLKQREQESDRYSGREDDPLVPRQLRQSrh  119
            HL+AQ++KLRRM FG+RSEK+ R + Q EA L++ ++ESD  +GR  DP V R LRQ+R 
Sbjct  39   HLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRT  98

Query  120  rrplpahlprEIYRLepeesccpecggeLDYLGEVSAEQLELVSSALKVIRTERVKKACT  179
            R+P+P  LPR+  RL P  +CCP+CGG L YLGE +AEQLEL+ SA++VIRT R K ACT
Sbjct  99   RKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACT  158

Query  180  KCDCIVEAPAPSRPIERGIAGPGLLARVLTGKYCEHLPLYRQSEIFARQGVELSRALLSN  239
            +CD IV+APAPSRPIERGIAGPGLLARVLT+KY EH PLY QSEI++RQGVELSR+LLS 
Sbjct  159  QCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSG  218

Query  240  WVDACCQLMTPLNDALYSYVMNTRKVHTDDTPVKVLAPGRKKAKTGYIWTYVRDDRNAGS  299
            WVDACC+L++PL++AL +YVM   K+H+DDTPV+VL PG KK+KTG +W+YVR+DRNAGS
Sbjct  219  WVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGS  278

Query  300  PEPPAVWFAYSPDHQGKHPEQHLRPFRGILQADAFAGYDRLFSAEREGGALTEAGCWAHA  359
            + +PAVWFAYSPD+++ HP+ HL  F G+LQADA+AG++ L+      G++TEA+CWAHA
Sbjct  279  ALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR----NGGITEAACWAHA  334

Query  360  RRKIHDVYISTKSATAEEALKLIGELYAIEHEIRGLPVSERLAVRQMQSKPLLTSLYKLM  419
            RRKIHDV +   SA +EEAL  IG+LYAIE +IRG+P  +RLA RQ ++KPLL SL   +
Sbjct  335  RRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWL  394

Query  420  QEKEHTL  426
            +EK  TL
Sbjct  395  REKMKTL  401

183) O3M_26417 in NC_018654


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  350 bits (1315),  Expect = 9e-98, Method: Compositional matrix adjust.
 Identities = 231/367 (63%), Positives = 295/367 (81%), Gaps = 4/367 (1%)

Query  60   HLRAQIEKLRRMLFGTRSEKLRREVEQAEALLKQREQESDRYSGREDDPLVPRQLRQSrh  119
            HL+AQ++KLRRM FG+RSEK+ R + Q EA L++ ++ESD  +GR  DP V R LRQ+R 
Sbjct  39   HLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRT  98

Query  120  rrplpahlprEIYRLepeesccpecggeLDYLGEVSAEQLELVSSALKVIRTERVKKACT  179
            R+P+P  LPR+  RL P  +CCP+CGG L YLGE +AEQLEL+ SA++VIRT R K ACT
Sbjct  99   RKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACT  158

Query  180  KCDCIVEAPAPSRPIERGIAGPGLLARVLTGKYCEHLPLYRQSEIFARQGVELSRALLSN  239
            +CD IV+APAPSRPIERGIAGPGLLARVLT+KY EH PLY QSEI++RQGVELSR+LLS 
Sbjct  159  QCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSG  218

Query  240  WVDACCQLMTPLNDALYSYVMNTRKVHTDDTPVKVLAPGRKKAKTGYIWTYVRDDRNAGS  299
            WVDACC+L++PL++AL +YVM   K+H+DDTPV+VL PG KK+KTG +W+YVR+DRNAGS
Sbjct  219  WVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGS  278

Query  300  PEPPAVWFAYSPDHQGKHPEQHLRPFRGILQADAFAGYDRLFSAEREGGALTEAGCWAHA  359
            + +PAVWFAYSPD+++ HP+ HL  F G+LQADA+AG++ L+      G++TEA+CWAHA
Sbjct  279  ALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR----NGGITEAACWAHA  334

Query  360  RRKIHDVYISTKSATAEEALKLIGELYAIEHEIRGLPVSERLAVRQMQSKPLLTSLYKLM  419
            RRKIHDV +   SA +EEAL  IG+LYAIE +IRG+P  +RLA RQ ++KPLL SL   +
Sbjct  335  RRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWL  394

Query  420  QEKEHTL  426
            +EK  TL
Sbjct  395  REKMKTL  401

184) O3O_26067 in NC_018662


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  350 bits (1315),  Expect = 9e-98, Method: Compositional matrix adjust.
 Identities = 231/367 (63%), Positives = 295/367 (81%), Gaps = 4/367 (1%)

Query  60   HLRAQIEKLRRMLFGTRSEKLRREVEQAEALLKQREQESDRYSGREDDPLVPRQLRQSrh  119
            HL+AQ++KLRRM FG+RSEK+ R + Q EA L++ ++ESD  +GR  DP V R LRQ+R 
Sbjct  39   HLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRT  98

Query  120  rrplpahlprEIYRLepeesccpecggeLDYLGEVSAEQLELVSSALKVIRTERVKKACT  179
            R+P+P  LPR+  RL P  +CCP+CGG L YLGE +AEQLEL+ SA++VIRT R K ACT
Sbjct  99   RKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACT  158

Query  180  KCDCIVEAPAPSRPIERGIAGPGLLARVLTGKYCEHLPLYRQSEIFARQGVELSRALLSN  239
            +CD IV+APAPSRPIERGIAGPGLLARVLT+KY EH PLY QSEI++RQGVELSR+LLS 
Sbjct  159  QCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSG  218

Query  240  WVDACCQLMTPLNDALYSYVMNTRKVHTDDTPVKVLAPGRKKAKTGYIWTYVRDDRNAGS  299
            WVDACC+L++PL++AL +YVM   K+H+DDTPV+VL PG KK+KTG +W+YVR+DRNAGS
Sbjct  219  WVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGS  278

Query  300  PEPPAVWFAYSPDHQGKHPEQHLRPFRGILQADAFAGYDRLFSAEREGGALTEAGCWAHA  359
            + +PAVWFAYSPD+++ HP+ HL  F G+LQADA+AG++ L+      G++TEA+CWAHA
Sbjct  279  ALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR----NGGITEAACWAHA  334

Query  360  RRKIHDVYISTKSATAEEALKLIGELYAIEHEIRGLPVSERLAVRQMQSKPLLTSLYKLM  419
            RRKIHDV +   SA +EEAL  IG+LYAIE +IRG+P  +RLA RQ ++KPLL SL   +
Sbjct  335  RRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWL  394

Query  420  QEKEHTL  426
            +EK  TL
Sbjct  395  REKMKTL  401

185) O3K_26452 in NC_018666


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  350 bits (1315),  Expect = 9e-98, Method: Compositional matrix adjust.
 Identities = 231/367 (63%), Positives = 295/367 (81%), Gaps = 4/367 (1%)

Query  60   HLRAQIEKLRRMLFGTRSEKLRREVEQAEALLKQREQESDRYSGREDDPLVPRQLRQSrh  119
            HL+AQ++KLRRM FG+RSEK+ R + Q EA L++ ++ESD  +GR  DP V R LRQ+R 
Sbjct  39   HLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRT  98

Query  120  rrplpahlprEIYRLepeesccpecggeLDYLGEVSAEQLELVSSALKVIRTERVKKACT  179
            R+P+P  LPR+  RL P  +CCP+CGG L YLGE +AEQLEL+ SA++VIRT R K ACT
Sbjct  99   RKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACT  158

Query  180  KCDCIVEAPAPSRPIERGIAGPGLLARVLTGKYCEHLPLYRQSEIFARQGVELSRALLSN  239
            +CD IV+APAPSRPIERGIAGPGLLARVLT+KY EH PLY QSEI++RQGVELSR+LLS 
Sbjct  159  QCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSG  218

Query  240  WVDACCQLMTPLNDALYSYVMNTRKVHTDDTPVKVLAPGRKKAKTGYIWTYVRDDRNAGS  299
            WVDACC+L++PL++AL +YVM   K+H+DDTPV+VL PG KK+KTG +W+YVR+DRNAGS
Sbjct  219  WVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGS  278

Query  300  PEPPAVWFAYSPDHQGKHPEQHLRPFRGILQADAFAGYDRLFSAEREGGALTEAGCWAHA  359
            + +PAVWFAYSPD+++ HP+ HL  F G+LQADA+AG++ L+      G++TEA+CWAHA
Sbjct  279  ALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR----NGGITEAACWAHA  334

Query  360  RRKIHDVYISTKSATAEEALKLIGELYAIEHEIRGLPVSERLAVRQMQSKPLLTSLYKLM  419
            RRKIHDV +   SA +EEAL  IG+LYAIE +IRG+P  +RLA RQ ++KPLL SL   +
Sbjct  335  RRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWL  394

Query  420  QEKEHTL  426
            +EK  TL
Sbjct  395  REKMKTL  401

186) SbBS512_E2143 in NC_010658


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  349 bits (1311),  Expect = 2e-97, Method: Compositional matrix adjust.
 Identities = 229/367 (63%), Positives = 296/367 (81%), Gaps = 4/367 (1%)

Query  40   HLRAQIEKLRRMLFGTRSEKLRREVEQAEALLKQREQDSDRYSGREDDPQVPRQLRQSrh  99
            HL+AQ++KLRRM FG+RSEK+ R + Q EA L++ +++SD  +GR  DP V R LRQ+R 
Sbjct  39   HLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRT  98

Query  100  rrplpehlpreINRLepeesccpecggeLDYLGEVSAEQLELVSSALKVIRTERVKKACT  159
            R+P+PE LPR+ +RL P  +CCP+CGG L YLGE +AEQLEL+ SA++VIRT R K ACT
Sbjct  99   RKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACT  158

Query  160  KCDCIVEAPAPSRPIERGIAGPGLLARVLTGKYCEHLPLYRQSEIFARQGVELSRALLSN  219
            +CD IV+APAPSRPIERGIAGPGLLARVLT+KY EH PLY QSEI++RQGVELSR+LLS 
Sbjct  159  QCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSG  218

Query  220  WVDACCQLMTPLNDALYRYVMNSRKVHTDDTPVKVLAPGRKKAKTGYIWTYVRDDRNAGS  279
            WVDACC+L++PL++AL  YVM   K+H+DDTPV+VL PG KK+KTG +W+YVR+DRNAGS
Sbjct  219  WVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGS  278

Query  280  PEPPAVWFAYSPDHQGKHPEQHLSPFRGILQADAFNGYDRLFSAEREGGALTEAGCWAHA  339
            + +PAVWFAYSPD+++ HP+ HL+ F G+LQADA+ G++ L+      G++TEA+CWAHA
Sbjct  279  ALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR----NGGITEAACWAHA  334

Query  340  RRKVHDVYISTKSATAEEALKLIGELYAIEHEIRGLPVSERLAVRQMQSKPLLTSLYKLM  399
            RRK+HDV +   SA +EEAL  IG+LYAIE +IRG+P  +RLA RQ ++KPLL SL   +
Sbjct  335  RRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWL  394

Query  400  QEKEHTL  406
            +EK  TL
Sbjct  395  REKMKTL  401


 Score = 93.6 bits (336),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 42/64 (66%), Positives = 56/64 (88%), Gaps = 0/64 (0%)

Query  453  KKNFMFFGSDHGGERGALLYGLIGTCRLNGIDPEAYLRYILSVLPEWPSNRVDELLPWNV  512
            K + +FFGS+HGGERGALLY+LIGTC+LN++DPE+YLR +L+V+++WP NRV ELLPW +
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRI  456

Query  513  ALTN  516
            AL  
Sbjct  457  ALPA  460

187) ECO103_3554 in NC_013353


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  349 bits (1310),  Expect = 2e-97, Method: Compositional matrix adjust.
 Identities = 222/429 (52%), Positives = 304/429 (71%), Gaps = 19/429 (4%)

Query  1    MNNTLPDDIEQLKALLIAQQAVIVRLSGEITGYAREISSLRALVAKLQRMLFGrsseksr  60
            MN+  +DDI  LK  L  Q+A+I  L   ++   REI  L+A + KL+RM FG  S    
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRS----  56

Query  61   ekiekkiARAETRITELQNRLGEAQLQLTSMAGETAPKTSDSPVR-----KALPATLPRD  115
                    +   RI++++  L   Q +  +++G     + + P+R     K++P +LPRD
Sbjct  57   -------EKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRD  109

Query  116  RQVISPAETECPVCSGKLKPLGESISEQLDIINTAFRVIETVRPKRACSRCDCIVQAPQP  175
             + + PA   CP C+G L  LGE  +EQL+++ +AFRVI TVR K+AC++CD IVQAP P
Sbjct  110  EKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAP  169

Query  176  PKPIERSYASPALLARIIMAKFAEHLPLYRQSEIYARQGVELHRNTMGRWVDIMGEQLRP  235
            ++PIER+ A+P+LLAR++ +K+AEH PLY QSEIY+RQGVEL R+ ++ WVD     L P
Sbjct  170  SRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSP  229

Query  236  LYDELKHYVLMPGKVHADDTPVNVLEPGQGKTRTGRLWVYVRDDRNAGSTMPAAVWFSYS  295
            L + L  YV+  GK+HADDTPV+VL PG+ KT+TGRLW YVR+DRNAGS++++AVWF+YS
Sbjct  230  LEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYS  289

Query  296  PDRKGIHPQQHLADYRGILQADAYAGYNALYESGQATEAACMAHARRKIHDVHVRHPTTV  355
            PDRK+IHPQ HLA + G+LQADAYAG+N LY +G  TEAAC AHARRKIHDVHVR P+++
Sbjct  290  PDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSAL  349

Query  356  TGEALRRIGELYAIEAEIRGSPAEERLAVRKARTVPLMQSLYEWLQGQMNTL---SRHSD  412
            T EAL +IG+LYAIEA+IRG PAE+RLA R+ +T PL++SL  WL+ +M+TL   S H++
Sbjct  350  TEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGG  409

Query  413  TAKAFTYLL  421
               A+ Y L
Sbjct  410  ERGALLYSL  418

188) ECO103_4925 in NC_013353


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  349 bits (1310),  Expect = 2e-97, Method: Compositional matrix adjust.
 Identities = 222/429 (52%), Positives = 304/429 (71%), Gaps = 19/429 (4%)

Query  1    MNNTLPDDIEQLKALLIAQQAVIVRLSGEITGYAREISSLRALVAKLQRMLFGrsseksr  60
            MN+  +DDI  LK  L  Q+A+I  L   ++   REI  L+A + KL+RM FG  S    
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRS----  56

Query  61   ekiekkiARAETRITELQNRLGEAQLQLTSMAGETAPKTSDSPVR-----KALPATLPRD  115
                    +   RI++++  L   Q +  +++G     + + P+R     K++P +LPRD
Sbjct  57   -------EKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRD  109

Query  116  RQVISPAETECPVCSGKLKPLGESISEQLDIINTAFRVIETVRPKRACSRCDCIVQAPQP  175
             + + PA   CP C+G L  LGE  +EQL+++ +AFRVI TVR K+AC++CD IVQAP P
Sbjct  110  EKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAP  169

Query  176  PKPIERSYASPALLARIIMAKFAEHLPLYRQSEIYARQGVELHRNTMGRWVDIMGEQLRP  235
            ++PIER+ A+P+LLAR++ +K+AEH PLY QSEIY+RQGVEL R+ ++ WVD     L P
Sbjct  170  SRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSP  229

Query  236  LYDELKHYVLMPGKVHADDTPVNVLEPGQGKTRTGRLWVYVRDDRNAGSTMPAAVWFSYS  295
            L + L  YV+  GK+HADDTPV+VL PG+ KT+TGRLW YVR+DRNAGS++++AVWF+YS
Sbjct  230  LEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYS  289

Query  296  PDRKGIHPQQHLADYRGILQADAYAGYNALYESGQATEAACMAHARRKIHDVHVRHPTTV  355
            PDRK+IHPQ HLA + G+LQADAYAG+N LY +G  TEAAC AHARRKIHDVHVR P+++
Sbjct  290  PDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSAL  349

Query  356  TGEALRRIGELYAIEAEIRGSPAEERLAVRKARTVPLMQSLYEWLQGQMNTL---SRHSD  412
            T EAL +IG+LYAIEA+IRG PAE+RLA R+ +T PL++SL  WL+ +M+TL   S H++
Sbjct  350  TEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGG  409

Query  413  TAKAFTYLL  421
               A+ Y L
Sbjct  410  ERGALLYSL  418

189) G2583_3631 in NC_013941


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  349 bits (1311),  Expect = 2e-97, Method: Compositional matrix adjust.
 Identities = 222/429 (52%), Positives = 304/429 (71%), Gaps = 19/429 (4%)

Query  1    MNNTLPDDIEQLKALLIAQQAVIVRLSGEITGYAREISSLRALVAKLQRMLFGrsseksr  60
            MN+  +DDI  LK  L  Q+A+I  L   ++   REI  L+A + KL+RM FG  S    
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRS----  56

Query  61   ekiekkiARAETRITELQNRLGEAQLQLTSMAGETAPKTSDSPVR-----KALPATLPRD  115
                    +   RI++++  L   Q +  +++G     + + P+R     K++P +LPRD
Sbjct  57   -------EKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRD  109

Query  116  RQVISPAETECPVCSGKLKPLGESISEQLDIINTAFRVIETVRPKRACSRCDCIVQAPQP  175
             + + PA   CP C+G L  LGE  +EQL+++ +AFRVI TVR K+AC++CD IVQAP P
Sbjct  110  EKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAP  169

Query  176  PKPIERSYASPALLARIIMAKFAEHLPLYRQSEIYARQGVELHRNTMGRWVDIMGEQLRP  235
            ++PIER+ A+P+LLAR++ +K+AEH PLY QSEIY+RQGVEL R+ ++ WVD     L P
Sbjct  170  SRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSP  229

Query  236  LYDELKHYVLMPGKVHADDTPVNVLEPGQGKTRTGRLWVYVRDDRNAGSTMPAAVWFSYS  295
            L + L  YV+  GK+HADDTPV+VL PG+ KT+TGRLW YVR+DRNAGS++++AVWF+YS
Sbjct  230  LEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYS  289

Query  296  PDRKGIHPQQHLADYRGILQADAYAGYNALYESGQATEAACMAHARRKIHDVHVRHPTTV  355
            PDRK+IHPQ HLA + G+LQADAYAG+N LY +G  TEAAC AHARRKIHDVHVR P+++
Sbjct  290  PDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSAL  349

Query  356  TGEALRRIGELYAIEAEIRGSPAEERLAVRKARTVPLMQSLYEWLQGQMNTL---SRHSD  412
            T EAL +IG+LYAIEA+IRG PAE+RLA R+ +T PL++SL  WL+ +M+TL   S H++
Sbjct  350  TEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGG  409

Query  413  TAKAFTYLL  421
               A+ Y L
Sbjct  410  ERGALLYSL  418

190) ECO55CA74_17315 in NC_017656


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  349 bits (1311),  Expect = 2e-97, Method: Compositional matrix adjust.
 Identities = 222/429 (52%), Positives = 304/429 (71%), Gaps = 19/429 (4%)

Query  1    MNNTLPDDIEQLKALLIAQQAVIVRLSGEITGYAREISSLRALVAKLQRMLFGrsseksr  60
            MN+  +DDI  LK  L  Q+A+I  L   ++   REI  L+A + KL+RM FG  S    
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRS----  56

Query  61   ekiekkiARAETRITELQNRLGEAQLQLTSMAGETAPKTSDSPVR-----KALPATLPRD  115
                    +   RI++++  L   Q +  +++G     + + P+R     K++P +LPRD
Sbjct  57   -------EKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRD  109

Query  116  RQVISPAETECPVCSGKLKPLGESISEQLDIINTAFRVIETVRPKRACSRCDCIVQAPQP  175
             + + PA   CP C+G L  LGE  +EQL+++ +AFRVI TVR K+AC++CD IVQAP P
Sbjct  110  EKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAP  169

Query  176  PKPIERSYASPALLARIIMAKFAEHLPLYRQSEIYARQGVELHRNTMGRWVDIMGEQLRP  235
            ++PIER+ A+P+LLAR++ +K+AEH PLY QSEIY+RQGVEL R+ ++ WVD     L P
Sbjct  170  SRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSP  229

Query  236  LYDELKHYVLMPGKVHADDTPVNVLEPGQGKTRTGRLWVYVRDDRNAGSTMPAAVWFSYS  295
            L + L  YV+  GK+HADDTPV+VL PG+ KT+TGRLW YVR+DRNAGS++++AVWF+YS
Sbjct  230  LEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYS  289

Query  296  PDRKGIHPQQHLADYRGILQADAYAGYNALYESGQATEAACMAHARRKIHDVHVRHPTTV  355
            PDRK+IHPQ HLA + G+LQADAYAG+N LY +G  TEAAC AHARRKIHDVHVR P+++
Sbjct  290  PDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSAL  349

Query  356  TGEALRRIGELYAIEAEIRGSPAEERLAVRKARTVPLMQSLYEWLQGQMNTL---SRHSD  412
            T EAL +IG+LYAIEA+IRG PAE+RLA R+ +T PL++SL  WL+ +M+TL   S H++
Sbjct  350  TEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGG  409

Query  413  TAKAFTYLL  421
               A+ Y L
Sbjct  410  ERGALLYSL  418

191) S3549 in NC_004741


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  349 bits (1309),  Expect = 3e-97, Method: Compositional matrix adjust.
 Identities = 224/423 (53%), Positives = 298/423 (71%), Gaps = 22/423 (5%)

Query  1    MNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKR  60
            MN+  +DDI LLK  L  Q++ ++    +++  E+EI++L+AQLD+LRRM FG  SEK  
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEK--  58

Query  61   HKLENQIRQAEKRLSELENRLNTARNLLEDAssvtdspdtsppsENPIASKPESPGRKSS  120
              +  +I Q E  L    NRL+   + L +               +P   +P    R  +
Sbjct  59   --VSRRIAQMEADL----NRLQKESDTLTGRVY------------DPAVQRPLRQTR--T  98

Query  121  RKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACS  180
            RKP+P  LPR+  RLLPA   CP CGG L  +GE  +EQL+++ +AF+VI T+R K AC+
Sbjct  99   RKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACT  158

Query  181  RCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVR  240
            +CD IVQAP P++PIERG A++GLLAR+L SKY EH PLY QSEIY+RQGVELSR+ +  
Sbjct  159  QCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSG  218

Query  241  WVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGS  300
            WV      L PL  AL++YV+  GK+HADDTPV+VL PGN KTKTGRLW YVR+DRNAGS
Sbjct  219  WVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGS  278

Query  301  SLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKI  360
            +L++AVWFAYS+DRK+ HPQ HLA + GVLQADAYAG+N LY  G + EA+C AHARRKI
Sbjct  279  ALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKI  338

Query  361  HDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQR  420
            HD +VR P+ +T+EAL +I++LY IEA+IRG PAE+RLA R+ ++  L++SL  W++ + 
Sbjct  339  HDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKM  398

Query  421  KTL  423
            KTL
Sbjct  399  KTL  401


 Score = 68.9 bits (242),  Expect = 6e-13, Method: Compositional matrix adjust.
 Identities = 32/60 (54%), Positives = 46/60 (77%), Gaps = 0/60 (0%)

Query  470  RKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNF  529
            + + LFFGS+ GGE +A++YSL+ TCK N+V+PE  LR+V+  + DWP N+V ELLPW +
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRI  456

192) S4031 in NC_004741


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  349 bits (1309),  Expect = 3e-97, Method: Compositional matrix adjust.
 Identities = 224/423 (53%), Positives = 298/423 (71%), Gaps = 22/423 (5%)

Query  1    MNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKR  60
            MN+  +DDI LLK  L  Q++ ++    +++  E+EI++L+AQLD+LRRM FG  SEK  
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEK--  58

Query  61   HKLENQIRQAEKRLSELENRLNTARNLLEDAssvtdspdtsppsENPIASKPESPGRKSS  120
              +  +I Q E  L    NRL+   + L +               +P   +P    R  +
Sbjct  59   --VSRRIAQMEADL----NRLQKESDTLTGRVY------------DPAVQRPLRQTR--T  98

Query  121  RKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACS  180
            RKP+P  LPR+  RLLPA   CP CGG L  +GE  +EQL+++ +AF+VI T+R K AC+
Sbjct  99   RKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACT  158

Query  181  RCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVR  240
            +CD IVQAP P++PIERG A++GLLAR+L SKY EH PLY QSEIY+RQGVELSR+ +  
Sbjct  159  QCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSG  218

Query  241  WVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGS  300
            WV      L PL  AL++YV+  GK+HADDTPV+VL PGN KTKTGRLW YVR+DRNAGS
Sbjct  219  WVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGS  278

Query  301  SLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKI  360
            +L++AVWFAYS+DRK+ HPQ HLA + GVLQADAYAG+N LY  G + EA+C AHARRKI
Sbjct  279  ALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKI  338

Query  361  HDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQR  420
            HD +VR P+ +T+EAL +I++LY IEA+IRG PAE+RLA R+ ++  L++SL  W++ + 
Sbjct  339  HDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKM  398

Query  421  KTL  423
            KTL
Sbjct  399  KTL  401


 Score = 69.4 bits (244),  Expect = 4e-13, Method: Compositional matrix adjust.
 Identities = 32/61 (53%), Positives = 47/61 (78%), Gaps = 0/61 (0%)

Query  470  RKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNF  529
            + + LFFGS+ GGE +A++YSL+ TCK N+V+PE  LR+V+  + DWP N+V ELLPW +
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRI  456

Query  530  S  530
            +
Sbjct  457  A  457

193) Z4317 in NC_002655


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  348 bits (1308),  Expect = 3e-97, Method: Compositional matrix adjust.
 Identities = 221/429 (52%), Positives = 304/429 (71%), Gaps = 19/429 (4%)

Query  1    MNNTLPDNIEQLKALLIAQQAVIVRLSGEITGYAREISSLRALVAKLQRMLFGrsseksr  60
            MN+  +D+I  LK  L  Q+A+I  L   ++   REI  L+A + KL+RM FG  S    
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRS----  56

Query  61   ekiekkiARAETRITELQNRLGEAQLQLTSMAGETAPKTSDSPVR-----KALPATLPRD  115
                    +   RI++++  L   Q +  +++G     + + P+R     K++P +LPRD
Sbjct  57   -------EKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRD  109

Query  116  RQVISPAETECPVCSGKLKPLGESISEQLDIINTAFRVIETVRPKRACSRCDCIVQAPQP  175
             + + PA   CP C+G L  LGE  +EQL+++ +AFRVI TVR K+AC++CD IVQAP P
Sbjct  110  EKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAP  169

Query  176  PKPIERSYASPALLARIIMAKFAEHLPLYRQSEIYARQGVELHRNTMGRWVDIMGEQLRP  235
            ++PIER+ A+P+LLAR++ +K+AEH PLY QSEIY+RQGVEL R+ ++ WVD     L P
Sbjct  170  SRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSP  229

Query  236  LYDELKHYVLMPGKVHADDTPVNVLEPGQGKTRTGRLWVYVRDDRNAGSTMPAAVWFSYS  295
            L + L  YV+  GK+HADDTPV+VL PG+ KT+TGRLW YVR+DRNAGS++++AVWF+YS
Sbjct  230  LEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYS  289

Query  296  PDRKGIHPQQHLADYRGILQADAYAGYNALYESGQATEAACMAHARRKIHDVHVRHPTTV  355
            PDRK+IHPQ HLA + G+LQADAYAG+N LY +G  TEAAC AHARRKIHDVHVR P+++
Sbjct  290  PDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSAL  349

Query  356  TGEALRRIGELYAIEAEIRGSPAEERLAVRKARTVPLMQSLYEWLQGQMNTL---SRHSD  412
            T EAL +IG+LYAIEA+IRG PAE+RLA R+ +T PL++SL  WL+ +M+TL   S H++
Sbjct  350  TEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGG  409

Query  413  TAKAFTYLL  421
               A+ Y L
Sbjct  410  ERGALLYSL  418

194) ECs3848 in NC_002695


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  348 bits (1308),  Expect = 3e-97, Method: Compositional matrix adjust.
 Identities = 221/429 (52%), Positives = 304/429 (71%), Gaps = 19/429 (4%)

Query  1    MNNTLPDNIEQLKALLIAQQAVIVRLSGEITGYAREISSLRALVAKLQRMLFGrsseksr  60
            MN+  +D+I  LK  L  Q+A+I  L   ++   REI  L+A + KL+RM FG  S    
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRS----  56

Query  61   ekiekkiARAETRITELQNRLGEAQLQLTSMAGETAPKTSDSPVR-----KALPATLPRD  115
                    +   RI++++  L   Q +  +++G     + + P+R     K++P +LPRD
Sbjct  57   -------EKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRD  109

Query  116  RQVISPAETECPVCSGKLKPLGESISEQLDIINTAFRVIETVRPKRACSRCDCIVQAPQP  175
             + + PA   CP C+G L  LGE  +EQL+++ +AFRVI TVR K+AC++CD IVQAP P
Sbjct  110  EKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAP  169

Query  176  PKPIERSYASPALLARIIMAKFAEHLPLYRQSEIYARQGVELHRNTMGRWVDIMGEQLRP  235
            ++PIER+ A+P+LLAR++ +K+AEH PLY QSEIY+RQGVEL R+ ++ WVD     L P
Sbjct  170  SRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSP  229

Query  236  LYDELKHYVLMPGKVHADDTPVNVLEPGQGKTRTGRLWVYVRDDRNAGSTMPAAVWFSYS  295
            L + L  YV+  GK+HADDTPV+VL PG+ KT+TGRLW YVR+DRNAGS++++AVWF+YS
Sbjct  230  LEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYS  289

Query  296  PDRKGIHPQQHLADYRGILQADAYAGYNALYESGQATEAACMAHARRKIHDVHVRHPTTV  355
            PDRK+IHPQ HLA + G+LQADAYAG+N LY +G  TEAAC AHARRKIHDVHVR P+++
Sbjct  290  PDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSAL  349

Query  356  TGEALRRIGELYAIEAEIRGSPAEERLAVRKARTVPLMQSLYEWLQGQMNTL---SRHSD  412
            T EAL +IG+LYAIEA+IRG PAE+RLA R+ +T PL++SL  WL+ +M+TL   S H++
Sbjct  350  TEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGG  409

Query  413  TAKAFTYLL  421
               A+ Y L
Sbjct  410  ERGALLYSL  418

195) CDCO157_3597 in NC_017906


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  348 bits (1308),  Expect = 3e-97, Method: Compositional matrix adjust.
 Identities = 221/429 (52%), Positives = 304/429 (71%), Gaps = 19/429 (4%)

Query  1    MNNTLPDNIEQLKALLIAQQAVIVRLSGEITGYAREISSLRALVAKLQRMLFGrsseksr  60
            MN+  +D+I  LK  L  Q+A+I  L   ++   REI  L+A + KL+RM FG  S    
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRS----  56

Query  61   ekiekkiARAETRITELQNRLGEAQLQLTSMAGETAPKTSDSPVR-----KALPATLPRD  115
                    +   RI++++  L   Q +  +++G     + + P+R     K++P +LPRD
Sbjct  57   -------EKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRD  109

Query  116  RQVISPAETECPVCSGKLKPLGESISEQLDIINTAFRVIETVRPKRACSRCDCIVQAPQP  175
             + + PA   CP C+G L  LGE  +EQL+++ +AFRVI TVR K+AC++CD IVQAP P
Sbjct  110  EKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAP  169

Query  176  PKPIERSYASPALLARIIMAKFAEHLPLYRQSEIYARQGVELHRNTMGRWVDIMGEQLRP  235
            ++PIER+ A+P+LLAR++ +K+AEH PLY QSEIY+RQGVEL R+ ++ WVD     L P
Sbjct  170  SRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSP  229

Query  236  LYDELKHYVLMPGKVHADDTPVNVLEPGQGKTRTGRLWVYVRDDRNAGSTMPAAVWFSYS  295
            L + L  YV+  GK+HADDTPV+VL PG+ KT+TGRLW YVR+DRNAGS++++AVWF+YS
Sbjct  230  LEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYS  289

Query  296  PDRKGIHPQQHLADYRGILQADAYAGYNALYESGQATEAACMAHARRKIHDVHVRHPTTV  355
            PDRK+IHPQ HLA + G+LQADAYAG+N LY +G  TEAAC AHARRKIHDVHVR P+++
Sbjct  290  PDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSAL  349

Query  356  TGEALRRIGELYAIEAEIRGSPAEERLAVRKARTVPLMQSLYEWLQGQMNTL---SRHSD  412
            T EAL +IG+LYAIEA+IRG PAE+RLA R+ +T PL++SL  WL+ +M+TL   S H++
Sbjct  350  TEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGG  409

Query  413  TAKAFTYLL  421
               A+ Y L
Sbjct  410  ERGALLYSL  418

196) SbBS512_A0078 in NC_010660


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  348 bits (1308),  Expect = 4e-97, Method: Compositional matrix adjust.
 Identities = 224/423 (53%), Positives = 298/423 (71%), Gaps = 22/423 (5%)

Query  1    MNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKR  60
            MN+  +DDI LLK  L  Q++ ++    +++  E+EI++L+AQLD+LRRM FG  SEK  
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEK--  58

Query  61   HKLENQIRQAEKRLSELENRLNTARNLLEDAssvtdspdtsppsENPIASKPESPGRKSS  120
              +  +I Q E  L    NRL+   + L +               +P   +P    R  +
Sbjct  59   --VSRRIAQMEADL----NRLQKESDTLTGRVY------------DPAVQRPLRQTR--T  98

Query  121  RKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACS  180
            RKP+P  LPR+  RLLPA   CP CGG L  +GE  +EQL+++ +AF+VI T+R K AC+
Sbjct  99   RKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACT  158

Query  181  RCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVR  240
            +CD IVQAP P++PIERG A++GLLAR+L SKY EH PLY QSEIY+RQGVELSR+ +  
Sbjct  159  QCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSG  218

Query  241  WVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGS  300
            WV      L PL  AL++YV+  GK+HADDTPV+VL PGN KTKTGRLW YVR+DRNAGS
Sbjct  219  WVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGS  278

Query  301  SLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKI  360
            +L++AVWFAYS+DRK+ HPQ HLA + GVLQADAYAG+N LY  G + EA+C AHARRKI
Sbjct  279  ALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKI  338

Query  361  HDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQR  420
            HD +VR P+ +T+EAL +I++LY IEA+IRG PAE+RLA R+ ++  L++SL  W++ + 
Sbjct  339  HDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKM  398

Query  421  KTL  423
            KTL
Sbjct  399  KTL  401


 Score = 69.4 bits (244),  Expect = 4e-13, Method: Compositional matrix adjust.
 Identities = 32/61 (53%), Positives = 47/61 (78%), Gaps = 0/61 (0%)

Query  470  RKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNF  529
            + + LFFGS+ GGE +A++YSL+ TCK N+V+PE  LR+V+  + DWP N+V ELLPW +
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRI  456

Query  530  S  530
            +
Sbjct  457  A  457

197) SF0860 in NC_004337


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  348 bits (1308),  Expect = 4e-97, Method: Compositional matrix adjust.
 Identities = 224/423 (53%), Positives = 298/423 (71%), Gaps = 22/423 (5%)

Query  1    MNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKR  60
            MN+  +DDI LLK  L  Q++ ++    +++  E+EI++L+AQLD+LRRM FG  SEK  
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEK--  58

Query  61   HKLENQIRQAEKRLSELENRLNTARNLLEDAssvtdspdtsppsENPIASKPESPGRKSS  120
              +  +I Q E  L    NRL+   + L +               +P   +P    R  +
Sbjct  59   --VSRRIAQMEADL----NRLQKESDTLTGRVY------------DPAVQRPLRQTR--T  98

Query  121  RKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACS  180
            RKP+P  LPR+  RLLPA   CP CGG L  +GE  +EQL+++ +AF+VI T+R K AC+
Sbjct  99   RKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACT  158

Query  181  RCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVR  240
            +CD IVQAP P++PIERG A++GLLAR+L SKY EH PLY QSEIY+RQGVELSR+ +  
Sbjct  159  QCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSG  218

Query  241  WVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGS  300
            WV      L PL  AL++YV+  GK+HADDTPV+VL PGN KTKTGRLW YVR+DRNAGS
Sbjct  219  WVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGS  278

Query  301  SLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKI  360
            +L++AVWFAYS+DRK+ HPQ HLA + GVLQADAYAG+N LY  G + EA+C AHARRKI
Sbjct  279  ALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKI  338

Query  361  HDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQR  420
            HD +VR P+ +T+EAL +I++LY IEA+IRG PAE+RLA R+ ++  L++SL  W++ + 
Sbjct  339  HDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKM  398

Query  421  KTL  423
            KTL
Sbjct  399  KTL  401


 Score = 69.4 bits (244),  Expect = 4e-13, Method: Compositional matrix adjust.
 Identities = 32/61 (53%), Positives = 47/61 (78%), Gaps = 0/61 (0%)

Query  470  RKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNF  529
            + + LFFGS+ GGE +A++YSL+ TCK N+V+PE  LR+V+  + DWP N+V ELLPW +
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRI  456

Query  530  S  530
            +
Sbjct  457  A  457

198) SF4182 in NC_004337


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  348 bits (1308),  Expect = 4e-97, Method: Compositional matrix adjust.
 Identities = 224/423 (53%), Positives = 298/423 (71%), Gaps = 22/423 (5%)

Query  1    MNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKR  60
            MN+  +DDI LLK  L  Q++ ++    +++  E+EI++L+AQLD+LRRM FG  SEK  
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEK--  58

Query  61   HKLENQIRQAEKRLSELENRLNTARNLLEDAssvtdspdtsppsENPIASKPESPGRKSS  120
              +  +I Q E  L    NRL+   + L +               +P   +P    R  +
Sbjct  59   --VSRRIAQMEADL----NRLQKESDTLTGRVY------------DPAVQRPLRQTR--T  98

Query  121  RKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACS  180
            RKP+P  LPR+  RLLPA   CP CGG L  +GE  +EQL+++ +AF+VI T+R K AC+
Sbjct  99   RKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACT  158

Query  181  RCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVR  240
            +CD IVQAP P++PIERG A++GLLAR+L SKY EH PLY QSEIY+RQGVELSR+ +  
Sbjct  159  QCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSG  218

Query  241  WVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGS  300
            WV      L PL  AL++YV+  GK+HADDTPV+VL PGN KTKTGRLW YVR+DRNAGS
Sbjct  219  WVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGS  278

Query  301  SLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKI  360
            +L++AVWFAYS+DRK+ HPQ HLA + GVLQADAYAG+N LY  G + EA+C AHARRKI
Sbjct  279  ALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKI  338

Query  361  HDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQR  420
            HD +VR P+ +T+EAL +I++LY IEA+IRG PAE+RLA R+ ++  L++SL  W++ + 
Sbjct  339  HDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKM  398

Query  421  KTL  423
            KTL
Sbjct  399  KTL  401


 Score = 69.4 bits (244),  Expect = 4e-13, Method: Compositional matrix adjust.
 Identities = 32/61 (53%), Positives = 47/61 (78%), Gaps = 0/61 (0%)

Query  470  RKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNF  529
            + + LFFGS+ GGE +A++YSL+ TCK N+V+PE  LR+V+  + DWP N+V ELLPW +
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRI  456

Query  530  S  530
            +
Sbjct  457  A  457

199) SFV_1385 in NC_008258


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  348 bits (1308),  Expect = 4e-97, Method: Compositional matrix adjust.
 Identities = 224/423 (53%), Positives = 298/423 (71%), Gaps = 22/423 (5%)

Query  1    MNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKR  60
            MN+  +DDI LLK  L  Q++ ++    +++  E+EI++L+AQLD+LRRM FG  SEK  
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEK--  58

Query  61   HKLENQIRQAEKRLSELENRLNTARNLLEDAssvtdspdtsppsENPIASKPESPGRKSS  120
              +  +I Q E  L    NRL+   + L +               +P   +P    R  +
Sbjct  59   --VSRRIAQMEADL----NRLQKESDTLTGRVY------------DPAVQRPLRQTR--T  98

Query  121  RKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACS  180
            RKP+P  LPR+  RLLPA   CP CGG L  +GE  +EQL+++ +AF+VI T+R K AC+
Sbjct  99   RKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACT  158

Query  181  RCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVR  240
            +CD IVQAP P++PIERG A++GLLAR+L SKY EH PLY QSEIY+RQGVELSR+ +  
Sbjct  159  QCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSG  218

Query  241  WVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGS  300
            WV      L PL  AL++YV+  GK+HADDTPV+VL PGN KTKTGRLW YVR+DRNAGS
Sbjct  219  WVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGS  278

Query  301  SLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKI  360
            +L++AVWFAYS+DRK+ HPQ HLA + GVLQADAYAG+N LY  G + EA+C AHARRKI
Sbjct  279  ALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKI  338

Query  361  HDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQR  420
            HD +VR P+ +T+EAL +I++LY IEA+IRG PAE+RLA R+ ++  L++SL  W++ + 
Sbjct  339  HDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKM  398

Query  421  KTL  423
            KTL
Sbjct  399  KTL  401


 Score = 69.4 bits (244),  Expect = 4e-13, Method: Compositional matrix adjust.
 Identities = 32/61 (53%), Positives = 47/61 (78%), Gaps = 0/61 (0%)

Query  470  RKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNF  529
            + + LFFGS+ GGE +A++YSL+ TCK N+V+PE  LR+V+  + DWP N+V ELLPW +
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRI  456

Query  530  S  530
            +
Sbjct  457  A  457

200) SFV_3312 in NC_008258


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  348 bits (1308),  Expect = 4e-97, Method: Compositional matrix adjust.
 Identities = 224/423 (53%), Positives = 298/423 (71%), Gaps = 22/423 (5%)

Query  1    MNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKR  60
            MN+  +DDI LLK  L  Q++ ++    +++  E+EI++L+AQLD+LRRM FG  SEK  
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEK--  58

Query  61   HKLENQIRQAEKRLSELENRLNTARNLLEDAssvtdspdtsppsENPIASKPESPGRKSS  120
              +  +I Q E  L    NRL+   + L +               +P   +P    R  +
Sbjct  59   --VSRRIAQMEADL----NRLQKESDTLTGRVY------------DPAVQRPLRQTR--T  98

Query  121  RKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACS  180
            RKP+P  LPR+  RLLPA   CP CGG L  +GE  +EQL+++ +AF+VI T+R K AC+
Sbjct  99   RKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACT  158

Query  181  RCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVR  240
            +CD IVQAP P++PIERG A++GLLAR+L SKY EH PLY QSEIY+RQGVELSR+ +  
Sbjct  159  QCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSG  218

Query  241  WVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGS  300
            WV      L PL  AL++YV+  GK+HADDTPV+VL PGN KTKTGRLW YVR+DRNAGS
Sbjct  219  WVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGS  278

Query  301  SLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKI  360
            +L++AVWFAYS+DRK+ HPQ HLA + GVLQADAYAG+N LY  G + EA+C AHARRKI
Sbjct  279  ALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKI  338

Query  361  HDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQR  420
            HD +VR P+ +T+EAL +I++LY IEA+IRG PAE+RLA R+ ++  L++SL  W++ + 
Sbjct  339  HDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKM  398

Query  421  KTL  423
            KTL
Sbjct  399  KTL  401


 Score = 69.4 bits (244),  Expect = 4e-13, Method: Compositional matrix adjust.
 Identities = 32/61 (53%), Positives = 47/61 (78%), Gaps = 0/61 (0%)

Query  470  RKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNF  529
            + + LFFGS+ GGE +A++YSL+ TCK N+V+PE  LR+V+  + DWP N+V ELLPW +
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRI  456

Query  530  S  530
            +
Sbjct  457  A  457

201) SFV_4190 in NC_008258


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  348 bits (1308),  Expect = 4e-97, Method: Compositional matrix adjust.
 Identities = 224/423 (53%), Positives = 298/423 (71%), Gaps = 22/423 (5%)

Query  1    MNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKR  60
            MN+  +DDI LLK  L  Q++ ++    +++  E+EI++L+AQLD+LRRM FG  SEK  
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEK--  58

Query  61   HKLENQIRQAEKRLSELENRLNTARNLLEDAssvtdspdtsppsENPIASKPESPGRKSS  120
              +  +I Q E  L    NRL+   + L +               +P   +P    R  +
Sbjct  59   --VSRRIAQMEADL----NRLQKESDTLTGRVY------------DPAVQRPLRQTR--T  98

Query  121  RKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACS  180
            RKP+P  LPR+  RLLPA   CP CGG L  +GE  +EQL+++ +AF+VI T+R K AC+
Sbjct  99   RKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACT  158

Query  181  RCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVR  240
            +CD IVQAP P++PIERG A++GLLAR+L SKY EH PLY QSEIY+RQGVELSR+ +  
Sbjct  159  QCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSG  218

Query  241  WVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGS  300
            WV      L PL  AL++YV+  GK+HADDTPV+VL PGN KTKTGRLW YVR+DRNAGS
Sbjct  219  WVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGS  278

Query  301  SLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKI  360
            +L++AVWFAYS+DRK+ HPQ HLA + GVLQADAYAG+N LY  G + EA+C AHARRKI
Sbjct  279  ALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKI  338

Query  361  HDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQR  420
            HD +VR P+ +T+EAL +I++LY IEA+IRG PAE+RLA R+ ++  L++SL  W++ + 
Sbjct  339  HDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKM  398

Query  421  KTL  423
            KTL
Sbjct  399  KTL  401


 Score = 69.7 bits (245),  Expect = 4e-13, Method: Compositional matrix adjust.
 Identities = 32/61 (53%), Positives = 47/61 (78%), Gaps = 0/61 (0%)

Query  470  RKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNF  529
            + + LFFGS+ GGE +A++YSL+ TCK N+V+PE  LR+V+  + DWP N+V ELLPW +
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRI  456

Query  530  S  530
            +
Sbjct  457  A  457

202) SFxv_4954 in NC_017319


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  348 bits (1305),  Expect = 6e-97, Method: Compositional matrix adjust.
 Identities = 221/423 (53%), Positives = 299/423 (71%), Gaps = 22/423 (5%)

Query  1    MNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKR  60
            MN+  +DDI LLK  L  Q++ ++    +++  E+EI++L+AQLD+LRRM FG  SEK  
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEK--  58

Query  61   HKLENQIRQAEKRLSELENRLNTARNLLEDAssvtdspdtsppsENPIASKPEFPGRKSS  120
                       +R++++E  LN     L+  S    +    P+ + P+        +  +
Sbjct  59   ---------VSRRIAQMEADLNR----LQKESDTLTGRVYDPAVQRPLR-------QTRT  98

Query  121  RKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACS  180
            RKP+P  LPR+  RLLPA   CP CGG L  +GE  +EQL+++ +AF+VI T+R K AC+
Sbjct  99   RKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACT  158

Query  181  RCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVR  240
            +CD IVQAP P++PIERG A++GLLAR+L SKY EH PLY QSEIY+RQGVELSR+ +  
Sbjct  159  QCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSG  218

Query  241  WVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGS  300
            WV      L PL  AL++YV+  GK+HADDTPV+VL PGN KTKTGRLW YVR+DRNAGS
Sbjct  219  WVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGS  278

Query  301  SLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKI  360
            +L++AVWFAYS+DRK+ HPQ HLA + GVLQADAYAG+N LY  G + EA+C AHARRKI
Sbjct  279  ALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKI  338

Query  361  HDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQR  420
            HD +VR P+ +T+EAL +I++LY IEA+IRG PAE+RLA R+ ++  L++SL  W++ + 
Sbjct  339  HDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKM  398

Query  421  KTL  423
            KTL
Sbjct  399  KTL  401


 Score = 69.4 bits (244),  Expect = 4e-13, Method: Compositional matrix adjust.
 Identities = 32/61 (53%), Positives = 47/61 (78%), Gaps = 0/61 (0%)

Query  470  RKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNF  529
            + + LFFGS+ GGE +A++YSL+ TCK N+V+PE  LR+V+  + DWP N+V ELLPW +
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRI  456

Query  530  S  530
            +
Sbjct  457  A  457

203) S0901 in NC_004741


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  348 bits (1305),  Expect = 6e-97, Method: Compositional matrix adjust.
 Identities = 221/423 (53%), Positives = 299/423 (71%), Gaps = 22/423 (5%)

Query  1    MNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKR  60
            MN+  +DDI LLK  L  Q++ ++    +++  E+EI++L+AQLD+LRRM FG  SEK  
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEK--  58

Query  61   HKLENQIRQAEKRLSELENRLNTARNLLEDAssvtdspdtsppsENPIASKPEFPGRKSS  120
                       +R++++E  LN     L+  S    +    P+ + P+        +  +
Sbjct  59   ---------VSRRIAQMEADLNR----LQKESDTLTGRVYDPAVQRPLR-------QTRT  98

Query  121  RKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACS  180
            RKP+P  LPR+  RLLPA   CP CGG L  +GE  +EQL+++ +AF+VI T+R K AC+
Sbjct  99   RKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACT  158

Query  181  RCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVR  240
            +CD IVQAP P++PIERG A++GLLAR+L SKY EH PLY QSEIY+RQGVELSR+ +  
Sbjct  159  QCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSG  218

Query  241  WVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGS  300
            WV      L PL  AL++YV+  GK+HADDTPV+VL PGN KTKTGRLW YVR+DRNAGS
Sbjct  219  WVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGS  278

Query  301  SLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKI  360
            +L++AVWFAYS+DRK+ HPQ HLA + GVLQADAYAG+N LY  G + EA+C AHARRKI
Sbjct  279  ALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKI  338

Query  361  HDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQR  420
            HD +VR P+ +T+EAL +I++LY IEA+IRG PAE+RLA R+ ++  L++SL  W++ + 
Sbjct  339  HDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKM  398

Query  421  KTL  423
            KTL
Sbjct  399  KTL  401


 Score = 69.4 bits (244),  Expect = 4e-13, Method: Compositional matrix adjust.
 Identities = 32/61 (53%), Positives = 47/61 (78%), Gaps = 0/61 (0%)

Query  470  RKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNF  529
            + + LFFGS+ GGE +A++YSL+ TCK N+V+PE  LR+V+  + DWP N+V ELLPW +
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRI  456

Query  530  S  530
            +
Sbjct  457  A  457

204) ECSP_3944 in NC_013008


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  347 bits (1304),  Expect = 5e-97, Method: Compositional matrix adjust.
 Identities = 213/405 (53%), Positives = 290/405 (72%), Gaps = 16/405 (3%)

Query  1    MNNTLPDNIEQLKALLIAQQAVIVRLSGEITGYAREISSLRALVAKLQRMLFGrsseksr  60
            MN+  +D+I  LK  L  Q+A+I  L   ++   REI  L+A + KL+RM FG  S    
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRS----  56

Query  61   ekiekkiARAETRITELQNRLGEAQLQLTSMAGETAPKTSDSPVR-----KALPATLPRD  115
                    +   RI++++  L   Q +  +++G     + + P+R     K++P +LPRD
Sbjct  57   -------EKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRD  109

Query  116  RQVISPAETECPVCSGKLKPLGESISEQLDIINTAFRVIETVRPKRACSRCDCIVQAPQP  175
             + + PA   CP C+G L  LGE  +EQL+++ +AFRVI TVR K+AC++CD IVQAP P
Sbjct  110  EKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAP  169

Query  176  PKPIERSYASPALLARIIMAKFAEHLPLYRQSEIYARQGVELHRNTMGRWVDIMGEQLRP  235
            ++PIER+ A+P+LLAR++ +K+AEH PLY QSEIY+RQGVEL R+ ++ WVD     L P
Sbjct  170  SRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSP  229

Query  236  LYDELKHYVLMPGKVHADDTPVNVLEPGQGKTRTGRLWVYVRDDRNAGSTMPAAVWFSYS  295
            L + L  YV+  GK+HADDTPV+VL PG+ KT+TGRLW YVR+DRNAGS++++AVWF+YS
Sbjct  230  LEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYS  289

Query  296  PDRKGIHPQQHLADYRGILQADAYAGYNALYESGQATEAACMAHARRKIHDVHVRHPTTV  355
            PDRK+IHPQ HLA + G+LQADAYAG+N LY +G  TEAAC AHARRKIHDVHVR P+++
Sbjct  290  PDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSAL  349

Query  356  TGEALRRIGELYAIEAEIRGSPAEERLAVRKARTVPLMQSLYEWL  400
            T EAL +IG+LYAIEA+IRG PAE+RLA R+ +T PL++SL  WL
Sbjct  350  TEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWL  394

205) G2583_3645 in NC_013941


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  347 bits (1303),  Expect = 7e-97, Method: Compositional matrix adjust.
 Identities = 222/356 (63%), Positives = 287/356 (81%), Gaps = 4/356 (1%)

Query  1    MLFGTRSEKLRREVEQAEALLKQREQDSDRYSGREDDPQVPRQLRQSrhrrplpahlprE  60
            M FG+RSEK+ R + Q EA L++ +++SD  +GR  DP V R LRQ+R R+P+P  LPR+
Sbjct  50   MNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRD  109

Query  61   IQRLeseesccpecggeLDYLGEVSAEQLELVSSALKVIRTERVKKACTKCDCIVEAPAP  120
             +RL +  +CCP+CGG L YLGE +AEQLEL+ SA++VIRT R K ACT+CD IV+APAP
Sbjct  110  EKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAP  169

Query  121  SRPIERGIAGPGLLARVLTGKYCEHLPLYRQSEIFARQGVELSRALLSNWVDACCQLMTP  180
            SRPIERGIAGPGLLARVLT+KY EH PLY QSEI++RQGVELSR+LLS WVDACC+L++P
Sbjct  170  SRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSP  229

Query  181  LNDALYRYVMNTRKLHTDDTPVKVLAPGLKKTKTGRIWTYVRDDRNAGSSSPPAVWFAYS  240
            L++AL  YVM   KLH+DDTPV+VL PG KKTKTGR+W+YVR+DRNAGS+ +PAVWFAYS
Sbjct  230  LEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYS  289

Query  241  PNRQGKHPEQHLRPFRGILQADAFTGYDRLFSAEREGGALTEVACWAHARRKIHDVYISS  300
            P+R++ HP+ HL  F G+LQADA++G++ L+      G++TE ACWAHARRKIHDV +  
Sbjct  290  PDRKSIHPQTHLACFSGVLQADAYAGFNELYR----NGGITEAACWAHARRKIHDVHVRI  345

Query  301  KSATAEEALKRISELYAIEDEIRGLPESERLAVRQQRSKALLTSLHEWMMEKNGTL  356
             SA +EEAL +I++LYAIE +IRG+P  +RLA RQ+++K+LL SL+ W+ EK  TL
Sbjct  346  PSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score = 94.7 bits (340),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 42/65 (65%), Positives = 56/65 (87%), Gaps = 0/65 (0%)

Query  402  GKKNYVFFGSDHGGERGALLYGLIGTCRLNGIDPEAYLRHILSVLPEWPSNRVDELLPWN  461
             K + +FFGS+HGGERGALLY+LIGTC+LN++DPE+YLRH+L+V+++WP NRV ELLPW 
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  462  VVLTN  466
            + L  
Sbjct  456  IALPA  460

206) SFV_0723 in NC_008258


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  347 bits (1303),  Expect = 8e-97, Method: Compositional matrix adjust.
 Identities = 221/423 (53%), Positives = 300/423 (71%), Gaps = 22/423 (5%)

Query  1    MNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKR  60
            MN+  +DDI LLK  L  Q++ ++    +++  E+EI++L+AQLD+LRRM FG  SEK  
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVS  60

Query  61   HKLENLIRQAEKRLSELENRLNTARNLLEDAssvtdspdtsppsENPIASKPEFPGRKSS  120
            +++ ++        ++L NRL+   + L +               +P   +P    R  +
Sbjct  61   RRIAQME-------ADL-NRLQKESDTLTGRVY------------DPAVQRPLRQTR--T  98

Query  121  RKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACS  180
            RKP+P  LPR+  RLLPA   CP CGG L  +GE  +EQL+++ +AF+VI T+R K AC+
Sbjct  99   RKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACT  158

Query  181  RCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVR  240
            +CD IVQAP P++PIERG A++GLLAR+L SKY EH PLY QSEIY+RQGVELSR+ +  
Sbjct  159  QCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSG  218

Query  241  WVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGS  300
            WV      L PL  AL++YV+  GK+HADDTPV+VL PGN KTKTGRLW YVR+DRNAGS
Sbjct  219  WVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGS  278

Query  301  SLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKI  360
            +L++AVWFAYS+DRK+ HPQ HLA + GVLQADAYAG+N LY  G + EA+C AHARRKI
Sbjct  279  ALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKI  338

Query  361  HDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQR  420
            HD +VR P+ +T+EAL +I++LY IEA+IRG PAE+RLA R+ ++  L++SL  W++ + 
Sbjct  339  HDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKM  398

Query  421  KTL  423
            KTL
Sbjct  399  KTL  401


 Score = 69.4 bits (244),  Expect = 4e-13, Method: Compositional matrix adjust.
 Identities = 32/61 (53%), Positives = 47/61 (78%), Gaps = 0/61 (0%)

Query  470  RKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNF  529
            + + LFFGS+ GGE +A++YSL+ TCK N+V+PE  LR+V+  + DWP N+V ELLPW +
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRI  456

Query  530  S  530
            +
Sbjct  457  A  457

207) CP0204 in NC_004851


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  346 bits (1301),  Expect = 1e-96, Method: Compositional matrix adjust.
 Identities = 223/423 (53%), Positives = 297/423 (71%), Gaps = 22/423 (5%)

Query  1    MNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKR  60
            MN+  +DDI LLK  L  Q++ ++    +++  E+EI++L+AQLD+LRRM FG  SEK  
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEK--  58

Query  61   HKLENQIRQAEKRLSELENRLNTARNLLEDAssvtdspdtsppsENPIASKPESPGRESS  120
              +  +I Q E  L    NRL+   + L +               +P   +P    R  +
Sbjct  59   --VSRRIAQMEADL----NRLQKESDTLTGRVY------------DPAVQRPLRQTR--T  98

Query  121  RKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACS  180
            RKP+P  LPR+  RLLPA   CP CGG L  +GE  +EQL+++ +AF+VI T+R K AC+
Sbjct  99   RKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACT  158

Query  181  RCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVR  240
            +CD IVQAP P++PIERG A++GLLAR+L SKY EH PLY QSEIY+RQGVELSR+ +  
Sbjct  159  QCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSG  218

Query  241  WVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGS  300
            WV      L PL  AL++YV+  GK+HADDTPV+VL PGN KTKTGRLW YVR+DRNAGS
Sbjct  219  WVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGS  278

Query  301  SLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKT  360
            +L++AVWFAYS+DRK+ HPQ HLA + GVLQADAYAG+N LY  G + EA+C AHARRK 
Sbjct  279  ALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKI  338

Query  361  HDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQR  420
            HD +VR P+ +T+EAL +I++LY IEA+IRG PAE+RLA R+ ++  L++SL  W++ + 
Sbjct  339  HDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKM  398

Query  421  KTL  423
            KTL
Sbjct  399  KTL  401


 Score = 69.4 bits (244),  Expect = 4e-13, Method: Compositional matrix adjust.
 Identities = 32/61 (53%), Positives = 47/61 (78%), Gaps = 0/61 (0%)

Query  470  RKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNF  529
            + + LFFGS+ GGE +A++YSL+ TCK N+V+PE  LR+V+  + DWP N+V ELLPW +
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRI  456

Query  530  S  530
            +
Sbjct  457  A  457

208) CP0213 in NC_004851


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  346 bits (1301),  Expect = 1e-96, Method: Compositional matrix adjust.
 Identities = 221/423 (53%), Positives = 299/423 (71%), Gaps = 22/423 (5%)

Query  1    MNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKR  60
            MN+  +DDI LLK  L  Q++ ++    +++  E+EI++L+AQLD+LRRM FG  SEK  
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEK--  58

Query  61   HKLENQIRQAEKRLSELENRLNTARNLLEDAssvtdspdtsppsENPIASKPEFPGRKSS  120
                       +R++++E  LN     L+  S    +    P+ + P+        +  +
Sbjct  59   ---------VSRRIAQMEADLNR----LQKESDTLTGRVYDPAVQRPLR-------QTRT  98

Query  121  RKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACS  180
            RKP+P  LPR+  RLLPA   CP CGG L  +GE  +EQL+++ +AF+VI T+R K AC+
Sbjct  99   RKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACT  158

Query  181  RCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVR  240
            +CD IVQAP P++PIERG A++GLLAR+L SKY EH PLY QSEIY+RQGVELSR+ +  
Sbjct  159  QCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSG  218

Query  241  WVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGS  300
            WV      L PL  AL++YV+  GK+HADDTPV+VL PGN KTKTGRLW YVR+DRNAGS
Sbjct  219  WVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGS  278

Query  301  SLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKI  360
            +L++AVWFAYS+DRK+ HPQ HLA + GVLQADAYAG+N LY  G + EA+C AHARRKI
Sbjct  279  ALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKI  338

Query  361  HDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQR  420
            HD +VR P+ +T+EAL +I++LY IEA+IRG PAE+RLA R+ ++  L++SL  W++ + 
Sbjct  339  HDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKM  398

Query  421  KTL  423
            KTL
Sbjct  399  KTL  401


 Score = 69.4 bits (244),  Expect = 4e-13, Method: Compositional matrix adjust.
 Identities = 32/61 (53%), Positives = 47/61 (78%), Gaps = 0/61 (0%)

Query  470  RKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNF  529
            + + LFFGS+ GGE +A++YSL+ TCK N+V+PE  LR+V+  + DWP N+V ELLPW +
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRI  456

Query  530  S  530
            +
Sbjct  457  A  457

209) Bxe_A0259 in NC_007951


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  346 bits (1301),  Expect = 1e-96, Method: Compositional matrix adjust.
 Identities = 227/508 (45%), Positives = 323/508 (64%), Gaps = 63/508 (12%)

Query  8    PDDVELLKALLVEARSL-------LAERDVEIEQLKAQIDKLRRMQFGRKSEQLQRQIET  60
            +DD+ LLK  L E  +L       L++R+ EI++L+AQ+DKLRRM+FG +SE++ R+I  
Sbjct  6    SDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQ  65

Query  61   LETQLEDLAAGRGVADVERAQARGANASSSNATTDEaasrqalaahlarEDHVLEPESSC  120
            +E++L+ L       + +   +R  +++   +  +  + +    +    E ++L + + C
Sbjct  66   MEADLNRLQK-----ESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  121  PDCGQQMQVLGEDVSEQLARVAAAFKVVRTIRRKFVCPCCSTIRQPPMPGLPIERSIAHP  180
            P+CG  +  LGED +EQL  + +AF+V+RT+R K  C  C TI Q+P P+ PIER+IA P
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  181  SLLADILVSKYADHQPLYRQSAIAARDGVTLDRASMGRWVGQCEALCAPLIEALRRYTVS  240
            +LLA +L SKYA+H PLY QS I +R+GV L R+ ++ WV+ C  L +PL EAL+ Y ++
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  241  AAKLHADDTPIPVLSPGNRKTRTGRLWVYVRDDRRSGSTQPAAVWFAYSPNRQGIHPQTH  300
             +KLHADDTP+ VL PGN+KT+TGRLW YVR+DR +GS+ ++AVWFAYSP+R++IHPQTH
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  301  LAGFRGTLQADAYAGFDELFLGGSVLEAACHAHARRKFYDIHVRTPSDTTQKALEYIGAL  360
            LA F G LQADAYAGF+EL+  G++ EAAC AHARRK+ D+HVR PS  T+ ALE IG L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  361  YDIEASIRGKPAAERLRIRQEKARPLLQTYEAWLKAKLETLSSKSDTAKAINYSINQWRA  420
            Y IEA IRG PA                          + L+ +   +K++  S++ W  
Sbjct  361  YAIEADIRGMPAE-------------------------QRLAERQRKTKPLLKSLESW--  393

Query  421  LTLYCEDGTLEIDNNIAENALRCVSLGRKNFLFAGSDSGGERAAAMYALIGTCALNDIDP  480
                                LR     + + LF GS+ GGER+A +Y+LIGTC LND+DP
Sbjct  394  --------------------LR----EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDP  429

Query  481  RAYLDYVLTHIADHKINRIDELLPWRVA  508
             +YL  VL  IAD  +NR+ ELLPWR+A
Sbjct  430  ESYLRHVLGVIADWPVNRVSELLPWRIA  457

210) E2348C_3238 in NC_011601


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  346 bits (1298),  Expect = 2e-96, Method: Compositional matrix adjust.
 Identities = 221/356 (63%), Positives = 286/356 (81%), Gaps = 4/356 (1%)

Query  1    MLFGTRSEKLRREVEQAEALLKQREQDSDRYSGREDDPQVPRQLRQSrhrrplpahlprE  60
            M FG+RSEK+ R + Q EA L++ +++SD  +GR  DP V R LRQ+R R+P+P  LPR+
Sbjct  50   MNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRD  109

Query  61   IQRLeseesccpecggeLDYLGEVSAEQLELVSSALKVIRTERVKKACTKCDCIVEAPAP  120
             +RL +  +CCP+CGG L YLGE +AEQLEL+ SA++VIRT R K ACT+CD IV+APAP
Sbjct  110  EKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAP  169

Query  121  SRPIERGIAGPGLLARVLTGKYCEHLPLYRQSEIFARQGVELSRALLSNWVDACCQLMTP  180
            SRPIERGIAGPGLLARVLT+KY EH PLY QSEI++RQGVELSR+LLS WVDACC+L++P
Sbjct  170  SRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSP  229

Query  181  LNDALYRYVMNTRKLHTDDTPVKVLAPGLKKTKTERIWTYVRDDRNAGSSSPPAVWFAYS  240
            L++AL  YVM   KLH+DDTPV+VL PG KKTKT R+W+YVR+DRNAGS+ +PAVWFAYS
Sbjct  230  LEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYS  289

Query  241  PNRQGKHPEQHLRPFRGILQADAFTGYDRLFSAEREGGALTEVACWAHARRKIHDVYISS  300
            P+R++ HP+ HL  F G+LQADA++G++ L+      G++TE ACWAHARRKIHDV +  
Sbjct  290  PDRKSIHPQTHLACFSGVLQADAYAGFNELYR----NGGITEAACWAHARRKIHDVHVRI  345

Query  301  KSATAEEALKRISELYAIEDEIRGLPESERLAVRQQRSKALLTSLHEWMMEKNGTL  356
             SA +EEAL +I++LYAIE +IRG+P  +RLA RQ+++K+LL SL+ W+ EK  TL
Sbjct  346  PSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score = 94.7 bits (340),  Expect = 9e-21, Method: Compositional matrix adjust.
 Identities = 42/64 (66%), Positives = 56/64 (88%), Gaps = 0/64 (0%)

Query  403  KKNYVFFGSDHGGERGALLYGLIGTCRLNGIDPEAYLRHILSVLPEWPSNRVDELLPWNV  462
            K + +FFGS+HGGERGALLY+LIGTC+LN++DPE+YLRH+L+V+++WP NRV ELLPW +
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRI  456

Query  463  VLTN  466
             L  
Sbjct  457  ALPA  460

211) ECO55CA74_17395 in NC_017656


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  346 bits (1298),  Expect = 2e-96, Method: Compositional matrix adjust.
 Identities = 221/356 (63%), Positives = 286/356 (81%), Gaps = 4/356 (1%)

Query  1    MLFGTRSEKLRREVEQAEALLKQREQDSDRYSGREDDPQVPRQLRQSrhrrplpahlprE  60
            M FG+RSEK+ R + Q EA L++ +++SD  +GR  DP V R LRQ+R R+P+P  LPR+
Sbjct  50   MNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRD  109

Query  61   IQRLeseesccpecggeLDYLGEVSAEQLELVSSALKVIRTERVKKACTKCDCIVEAPAP  120
             +RL +  +CCP+CGG L YLGE +AEQLEL+ SA++VIRT R K ACT+CD IV+APAP
Sbjct  110  EKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAP  169

Query  121  SRPIERGIAGPGLLARVLTGKYCKHLPLYRQSEIFARQGVELSRALLSNWVDACCQLMTP  180
            SRPIERGIAGPGLLARVLT+KY  H PLY QSEI++RQGVELSR+LLS WVDACC+L++P
Sbjct  170  SRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSP  229

Query  181  LNDALYRYVMNTRKLHTDDTPVKVLAPGLKKTKTGRIWTYVRDDRNAGSSSPPAVWFAYS  240
            L++AL  YVM   KLH+DDTPV+VL PG KKTKTGR+W+YVR+DRNAGS+ +PAVWFAYS
Sbjct  230  LEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYS  289

Query  241  PNRQGKHPEQHLRPFRGILQADAFTGYDRLFSAEREGGALTEVACWAHARRKIHDVYISS  300
            P+R++ HP+ HL  F G+LQADA++G++ L+      G++TE ACWAHARRKIHDV +  
Sbjct  290  PDRKSIHPQTHLACFSGVLQADAYAGFNELYR----NGGITEAACWAHARRKIHDVHVRI  345

Query  301  KSATAEEALKRISELYAIEDEIRGLPESERLAVRQQRSKALLTSLHEWMMEKNGTL  356
             SA +EEAL +I++LYAIE +IRG+P  +RLA RQ+++K+LL SL+ W+ EK  TL
Sbjct  346  PSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score = 94.7 bits (340),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 42/65 (65%), Positives = 56/65 (87%), Gaps = 0/65 (0%)

Query  402  GKKNYVFFGSDHGGERGALLYGLIGTCRLNGIDPEAYLRHILSVLPEWPSNRVDELLPWN  461
             K + +FFGS+HGGERGALLY+LIGTC+LN++DPE+YLRH+L+V+++WP NRV ELLPW 
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  462  VVLTN  466
            + L  
Sbjct  456  IALPA  460

212) SF3324 in NC_004337


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  346 bits (1298),  Expect = 2e-96, Method: Compositional matrix adjust.
 Identities = 220/423 (53%), Positives = 298/423 (71%), Gaps = 22/423 (5%)

Query  1    MNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKR  60
            MN+  +DDI LLK  L  Q++ ++    +++  E+EI++L+AQLD+LRRM FG  SEK  
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEK--  58

Query  61   HKLENQIRQAEKRLSELENRLNTARNLLEDAssvtdspdtsppsENPIASKPEFPGRKSS  120
                       +R++++E  LN     L+  S    +    P+ + P+        +  +
Sbjct  59   ---------VSRRIAQMEADLNR----LQKESDTLTGRVYDPAVQRPLR-------QTRT  98

Query  121  RKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACS  180
            RKP+P  LPR+  RLLPA   CP CGG L  +GE  +EQL+++ +AF+VI T+R K AC+
Sbjct  99   RKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACT  158

Query  181  RCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVR  240
            +CD IVQAP P++PIERG A++GLLAR+L SKY EH PLY QSEIY+RQGVELSR+ +  
Sbjct  159  QCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSG  218

Query  241  WVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGS  300
            WV      L PL  AL++YV+  GK+HADDTPV+VL PGN KTKTGRLW YVR+DRNAGS
Sbjct  219  WVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGS  278

Query  301  SLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKT  360
            +L++AVWFAYS+DRK+ HPQ HLA + GVLQADAYAG+N LY  G + EA+C AHARRK 
Sbjct  279  ALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKI  338

Query  361  HDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQR  420
            HD +VR P+ +T+EAL +I++LY IEA+IRG PAE+RLA R+ ++  L++SL  W++ + 
Sbjct  339  HDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKM  398

Query  421  KTL  423
            KTL
Sbjct  399  KTL  401


 Score = 69.4 bits (244),  Expect = 4e-13, Method: Compositional matrix adjust.
 Identities = 32/61 (53%), Positives = 47/61 (78%), Gaps = 0/61 (0%)

Query  470  RKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNF  529
            + + LFFGS+ GGE +A++YSL+ TCK N+V+PE  LR+V+  + DWP N+V ELLPW +
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRI  456

Query  530  S  530
            +
Sbjct  457  A  457

213) CP0112 in NC_004851


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  346 bits (1298),  Expect = 2e-96, Method: Compositional matrix adjust.
 Identities = 220/423 (53%), Positives = 298/423 (71%), Gaps = 22/423 (5%)

Query  1    MNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKR  60
            MN+  +DDI LLK  L  Q++ ++    +++  E+EI++L+AQLD+LRRM FG  SEK  
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEK--  58

Query  61   HKLENQIRQAEKRLSELENRLNTARNLLEDAssvtdspdtsppsENPIASKPEFPGRKSS  120
                       +R++++E  LN     L+  S    +    P+ + P+        +  +
Sbjct  59   ---------VSRRIAQMEADLNR----LQKESDTLTGRVYDPAVQRPLR-------QTRT  98

Query  121  RKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACS  180
            RKP+P  LPR+  RLLPA   CP CGG L  +GE  +EQL+++ +AF+VI T+R K AC+
Sbjct  99   RKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACT  158

Query  181  RCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVR  240
            +CD IVQAP P++PIERG A++GLLAR+L SKY EH PLY QSEIY+RQGVELSR+ +  
Sbjct  159  QCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSG  218

Query  241  WVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGS  300
            WV      L PL  AL++YV+  GK+HADDTPV+VL PGN KTKTGRLW YVR+DRNAGS
Sbjct  219  WVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGS  278

Query  301  SLPAAVWFAYSADRKGEHPQLHLAKYQGVLPADAYAGYNVLYETGRVKEAGCLAHARRKI  360
            +L++AVWFAYS+DRK+ HPQ HLA + GVL ADAYAG+N LY  G + EA+C AHARRKI
Sbjct  279  ALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKI  338

Query  361  HDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQR  420
            HD +VR P+ +T+EAL +I++LY IEA+IRG PAE+RLA R+ ++  L++SL  W++ + 
Sbjct  339  HDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKM  398

Query  421  KTL  423
            KTL
Sbjct  399  KTL  401


 Score = 69.4 bits (244),  Expect = 4e-13, Method: Compositional matrix adjust.
 Identities = 32/61 (53%), Positives = 47/61 (78%), Gaps = 0/61 (0%)

Query  470  RKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNF  529
            + + LFFGS+ GGE +A++YSL+ TCK N+V+PE  LR+V+  + DWP N+V ELLPW +
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRI  456

Query  530  S  530
            +
Sbjct  457  A  457

214) SFxv_5063 in NC_017319


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  345 bits (1295),  Expect = 3e-96, Method: Compositional matrix adjust.
 Identities = 220/423 (53%), Positives = 298/423 (71%), Gaps = 22/423 (5%)

Query  1    MNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKR  60
            MN+  +DDI LLK  L  Q++ ++    +++  E+EI++L+AQLD+LRRM FG  SEK  
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEK--  58

Query  61   HKLENQIRQAEKRLSELENRLNTARNLLEDAssvtdspdtsppsENPIASKPEFPGRKSS  120
                       +R++++E  LN     L+  S    +    P+ + P+        +  +
Sbjct  59   ---------VSRRIAQMEADLNR----LQKESDTLTGRVYDPAVQRPLR-------QTRT  98

Query  121  RKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACS  180
            RKP+P  LPR+  RLLPA   CP CGG L  +GE  +EQL+++ +AF+VI T+R K AC+
Sbjct  99   RKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACT  158

Query  181  RCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVR  240
            +CD IVQAP P++PIERG A++GLLAR+L SKY EH PLY QSEIY+RQGVELSR+ +  
Sbjct  159  QCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSG  218

Query  241  WVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGS  300
            WV      L PL  AL++YV+  GK+HADDTPV+VL PGN KTKTGRLW YVR+DRNAGS
Sbjct  219  WVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGS  278

Query  301  SLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKT  360
            +L++AVWFAYS+DRK+ HPQ HLA + GVLQADAYAG+N LY  G + EA+C AHARRK 
Sbjct  279  ALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKI  338

Query  361  HDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQR  420
            HD +VR P+ +T+EAL +I++LY IEA+IRG PAE+RLA R+ ++  L++SL  W++ + 
Sbjct  339  HDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKM  398

Query  421  KTL  423
            KTL
Sbjct  399  KTL  401


 Score = 69.4 bits (244),  Expect = 4e-13, Method: Compositional matrix adjust.
 Identities = 32/61 (53%), Positives = 47/61 (78%), Gaps = 0/61 (0%)

Query  470  RKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNF  529
            + + LFFGS+ GGE +A++YSL+ TCK N+V+PE  LR+V+  + DWP N+V ELLPW +
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRI  456

Query  530  S  530
            +
Sbjct  457  A  457

215) S2184 in NC_004741


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  345 bits (1295),  Expect = 3e-96, Method: Compositional matrix adjust.
 Identities = 220/423 (53%), Positives = 298/423 (71%), Gaps = 22/423 (5%)

Query  1    MNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKR  60
            MN+  +DDI LLK  L  Q++ ++    +++  E+EI++L+AQLD+LRRM FG  SEK  
Sbjct  1    MNDISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEK--  58

Query  61   HKLENQIRQAEKRLSELENRLNTARNLLEDAssvtdspdtsppsENPIASKPEFPGRKSS  120
                       +R++++E  LN     L+  S    +    P+ + P+        +  +
Sbjct  59   ---------VSRRIAQMEADLNR----LQKESDTLTGRVYDPAVQRPLR-------QTRT  98

Query  121  RKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACS  180
            RKP+P  LPR+  RLLPA   CP CGG L  +GE  +EQL+++ +AF+VI T+R K AC+
Sbjct  99   RKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACT  158

Query  181  RCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVR  240
            +CD IVQAP P++PIERG A++GLLAR+L SKY EH PLY QSEIY+RQGVELSR+ +  
Sbjct  159  QCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSG  218

Query  241  WVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGS  300
            WV      L PL  AL++YV+  GK+HADDTPV+VL PGN KTKTGRLW YVR+DRNAGS
Sbjct  219  WVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGS  278

Query  301  SLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKT  360
            +L++AVWFAYS+DRK+ HPQ HLA + GVLQADAYAG+N LY  G + EA+C AHARRK 
Sbjct  279  ALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKI  338

Query  361  HDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQR  420
            HD +VR P+ +T+EAL +I++LY IEA+IRG PAE+RLA R+ ++  L++SL  W++ + 
Sbjct  339  HDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKM  398

Query  421  KTL  423
            KTL
Sbjct  399  KTL  401


 Score = 69.4 bits (244),  Expect = 4e-13, Method: Compositional matrix adjust.
 Identities = 32/61 (53%), Positives = 47/61 (78%), Gaps = 0/61 (0%)

Query  470  RKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNF  529
            + + LFFGS+ GGE +A++YSL+ TCK N+V+PE  LR+V+  + DWP N+V ELLPW +
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRI  456

Query  530  S  530
            +
Sbjct  457  A  457

216) ECSE_P3-0016 in NC_011416


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  343 bits (1289),  Expect = 8e-96, Method: Compositional matrix adjust.
 Identities = 217/380 (58%), Positives = 287/380 (76%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEIYRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI +L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASFPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P S+PR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKLACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTDITTEALQRIGELYAIEAEVRGCSAEQRLAARKT  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  RAAPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401

217) Z4340 in NC_002655


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  342 bits (1285),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 221/356 (63%), Positives = 287/356 (81%), Gaps = 4/356 (1%)

Query  1    MLFGTRSEKLRREVEQAEALLKQREQDSDRYSGREDDPQVPRQLRQSrhrrplpahlprE  60
            M FG+RSEK+ R + Q EA L++ +++SD  +GR  DP V R LRQ+R R+P+P  LPR+
Sbjct  50   MNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRD  109

Query  61   IQRLeseesccpecggeLDYLGEVSAEQLELVSSALKVIRTERVKKACTKCDCIVEAPAP  120
             +RL +  +CCP+CGG L YLGE +AEQLEL+ SA++VIRT R K ACT+CD IV+APAP
Sbjct  110  EKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAP  169

Query  121  SRPIERGIAGPGLLARVLTGKYCEHLPLYRQSEIFARQGVELSRALLSNWVDACCQLMTP  180
            SRPIERGIAGPGLLARVLT+KY EH PLY QSEI++RQGVELSR+LLS WVDACC+L++P
Sbjct  170  SRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSP  229

Query  181  LNDALYRYVMNTRKLHTDDTPVKVLAPGLKKTKTGRIWTYVRDDRNAGSSSPPAVWFAYS  240
            L++AL  YVM   KLH+DDTPV+VL PG KKTKTGR+W+YVR+DRNAGS+ +PAVWFAYS
Sbjct  230  LEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYS  289

Query  241  PNRQGKHPEQHLRPFRGILQADAFTGYDRLFSAEREGGALTEVACRAHARRKIHDVYISS  300
            P+R++ HP+ HL  F G+LQADA++G++ L+      G++TE AC+AHARRKIHDV +  
Sbjct  290  PDRKSIHPQTHLACFSGVLQADAYAGFNELYR----NGGITEAACWAHARRKIHDVHVRI  345

Query  301  KSATAEEALKRISELYAIEDEIRGLPESERLAVRQQRSKALLTSLHEWMMEKNGTL  356
             SA +EEAL +I++LYAIE +IRG+P  +RLA RQ+++K+LL SL+ W+ EK  TL
Sbjct  346  PSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score = 94.7 bits (340),  Expect = 9e-21, Method: Compositional matrix adjust.
 Identities = 42/65 (65%), Positives = 56/65 (87%), Gaps = 0/65 (0%)

Query  402  GKKNYVFFGSDHGGERGALLYGLIGTCRLNGIDPEAYLRHILSVLPEWPSNRVDELLPWN  461
             K + +FFGS+HGGERGALLY+LIGTC+LN++DPE+YLRH+L+V+++WP NRV ELLPW 
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  462  VVLTN  466
            + L  
Sbjct  456  IALPA  460

218) ECs3869 in NC_002695


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  342 bits (1285),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 221/356 (63%), Positives = 287/356 (81%), Gaps = 4/356 (1%)

Query  1    MLFGTRSEKLRREVEQAEALLKQREQDSDRYSGREDDPQVPRQLRQSrhrrplpahlprE  60
            M FG+RSEK+ R + Q EA L++ +++SD  +GR  DP V R LRQ+R R+P+P  LPR+
Sbjct  50   MNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRD  109

Query  61   IQRLeseesccpecggeLDYLGEVSAEQLELVSSALKVIRTERVKKACTKCDCIVEAPAP  120
             +RL +  +CCP+CGG L YLGE +AEQLEL+ SA++VIRT R K ACT+CD IV+APAP
Sbjct  110  EKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAP  169

Query  121  SRPIERGIAGPGLLARVLTGKYCEHLPLYRQSEIFARQGVELSRALLSNWVDACCQLMTP  180
            SRPIERGIAGPGLLARVLT+KY EH PLY QSEI++RQGVELSR+LLS WVDACC+L++P
Sbjct  170  SRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSP  229

Query  181  LNDALYRYVMNTRKLHTDDTPVKVLAPGLKKTKTGRIWTYVRDDRNAGSSSPPAVWFAYS  240
            L++AL  YVM   KLH+DDTPV+VL PG KKTKTGR+W+YVR+DRNAGS+ +PAVWFAYS
Sbjct  230  LEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYS  289

Query  241  PNRQGKHPEQHLRPFRGILQADAFTGYDRLFSAEREGGALTEVACRAHARRKIHDVYISS  300
            P+R++ HP+ HL  F G+LQADA++G++ L+      G++TE AC+AHARRKIHDV +  
Sbjct  290  PDRKSIHPQTHLACFSGVLQADAYAGFNELYR----NGGITEAACWAHARRKIHDVHVRI  345

Query  301  KSATAEEALKRISELYAIEDEIRGLPESERLAVRQQRSKALLTSLHEWMMEKNGTL  356
             SA +EEAL +I++LYAIE +IRG+P  +RLA RQ+++K+LL SL+ W+ EK  TL
Sbjct  346  PSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score = 94.7 bits (340),  Expect = 9e-21, Method: Compositional matrix adjust.
 Identities = 42/65 (65%), Positives = 56/65 (87%), Gaps = 0/65 (0%)

Query  402  GKKNYVFFGSDHGGERGALLYGLIGTCRLNGIDPEAYLRHILSVLPEWPSNRVDELLPWN  461
             K + +FFGS+HGGERGALLY+LIGTC+LN++DPE+YLRH+L+V+++WP NRV ELLPW 
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  462  VVLTN  466
            + L  
Sbjct  456  IALPA  460

219) ECSP_3963 in NC_013008


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  342 bits (1285),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 221/356 (63%), Positives = 287/356 (81%), Gaps = 4/356 (1%)

Query  1    MLFGTRSEKLRREVEQAEALLKQREQDSDRYSGREDDPQVPRQLRQSrhrrplpahlprE  60
            M FG+RSEK+ R + Q EA L++ +++SD  +GR  DP V R LRQ+R R+P+P  LPR+
Sbjct  50   MNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRD  109

Query  61   IQRLeseesccpecggeLDYLGEVSAEQLELVSSALKVIRTERVKKACTKCDCIVEAPAP  120
             +RL +  +CCP+CGG L YLGE +AEQLEL+ SA++VIRT R K ACT+CD IV+APAP
Sbjct  110  EKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAP  169

Query  121  SRPIERGIAGPGLLARVLTGKYCEHLPLYRQSEIFARQGVELSRALLSNWVDACCQLMTP  180
            SRPIERGIAGPGLLARVLT+KY EH PLY QSEI++RQGVELSR+LLS WVDACC+L++P
Sbjct  170  SRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSP  229

Query  181  LNDALYRYVMNTRKLHTDDTPVKVLAPGLKKTKTGRIWTYVRDDRNAGSSSPPAVWFAYS  240
            L++AL  YVM   KLH+DDTPV+VL PG KKTKTGR+W+YVR+DRNAGS+ +PAVWFAYS
Sbjct  230  LEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYS  289

Query  241  PNRQGKHPEQHLRPFRGILQADAFTGYDRLFSAEREGGALTEVACRAHARRKIHDVYISS  300
            P+R++ HP+ HL  F G+LQADA++G++ L+      G++TE AC+AHARRKIHDV +  
Sbjct  290  PDRKSIHPQTHLACFSGVLQADAYAGFNELYR----NGGITEAACWAHARRKIHDVHVRI  345

Query  301  KSATAEEALKRISELYAIEDEIRGLPESERLAVRQQRSKALLTSLHEWMMEKNGTL  356
             SA +EEAL +I++LYAIE +IRG+P  +RLA RQ+++K+LL SL+ W+ EK  TL
Sbjct  346  PSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score = 94.7 bits (340),  Expect = 9e-21, Method: Compositional matrix adjust.
 Identities = 42/65 (65%), Positives = 56/65 (87%), Gaps = 0/65 (0%)

Query  402  GKKNYVFFGSDHGGERGALLYGLIGTCRLNGIDPEAYLRHILSVLPEWPSNRVDELLPWN  461
             K + +FFGS+HGGERGALLY+LIGTC+LN++DPE+YLRH+L+V+++WP NRV ELLPW 
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  462  VVLTN  466
            + L  
Sbjct  456  IALPA  460

220) CDCO157_3613 in NC_017906


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  342 bits (1285),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 221/356 (63%), Positives = 287/356 (81%), Gaps = 4/356 (1%)

Query  1    MLFGTRSEKLRREVEQAEALLKQREQDSDRYSGREDDPQVPRQLRQSrhrrplpahlprE  60
            M FG+RSEK+ R + Q EA L++ +++SD  +GR  DP V R LRQ+R R+P+P  LPR+
Sbjct  50   MNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRD  109

Query  61   IQRLeseesccpecggeLDYLGEVSAEQLELVSSALKVIRTERVKKACTKCDCIVEAPAP  120
             +RL +  +CCP+CGG L YLGE +AEQLEL+ SA++VIRT R K ACT+CD IV+APAP
Sbjct  110  EKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAP  169

Query  121  SRPIERGIAGPGLLARVLTGKYCEHLPLYRQSEIFARQGVELSRALLSNWVDACCQLMTP  180
            SRPIERGIAGPGLLARVLT+KY EH PLY QSEI++RQGVELSR+LLS WVDACC+L++P
Sbjct  170  SRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSP  229

Query  181  LNDALYRYVMNTRKLHTDDTPVKVLAPGLKKTKTGRIWTYVRDDRNAGSSSPPAVWFAYS  240
            L++AL  YVM   KLH+DDTPV+VL PG KKTKTGR+W+YVR+DRNAGS+ +PAVWFAYS
Sbjct  230  LEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYS  289

Query  241  PNRQGKHPEQHLRPFRGILQADAFTGYDRLFSAEREGGALTEVACRAHARRKIHDVYISS  300
            P+R++ HP+ HL  F G+LQADA++G++ L+      G++TE AC+AHARRKIHDV +  
Sbjct  290  PDRKSIHPQTHLACFSGVLQADAYAGFNELYR----NGGITEAACWAHARRKIHDVHVRI  345

Query  301  KSATAEEALKRISELYAIEDEIRGLPESERLAVRQQRSKALLTSLHEWMMEKNGTL  356
             SA +EEAL +I++LYAIE +IRG+P  +RLA RQ+++K+LL SL+ W+ EK  TL
Sbjct  346  PSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score = 94.7 bits (340),  Expect = 9e-21, Method: Compositional matrix adjust.
 Identities = 42/65 (65%), Positives = 56/65 (87%), Gaps = 0/65 (0%)

Query  402  GKKNYVFFGSDHGGERGALLYGLIGTCRLNGIDPEAYLRHILSVLPEWPSNRVDELLPWN  461
             K + +FFGS+HGGERGALLY+LIGTC+LN++DPE+YLRH+L+V+++WP NRV ELLPW 
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  462  VVLTN  466
            + L  
Sbjct  456  IALPA  460

221) BYI23_E000780 in NC_016591


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  342 bits (1285),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 219/492 (45%), Positives = 320/492 (66%), Gaps = 53/492 (10%)

Query  20   EQQASIENMVREIAARDDEIERLKAQIDKLRRMYFGSKSEKLARQIDKLEAQLEDLTAGQ  79
            EQ+A I+ +   ++ R+ EI++L+AQ+DKLRRM FGS+SEK++R+I ++EA+L+ L    
Sbjct  18   EQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKES  77

Query  80   GAAETRGHRDKTSTAPPGRAPTREPLPSHLPRDEIELTPN-PTCPKCATTMQRLGEDVSE  138
            ++   R   D +   P  ++ TR P+P  LPRDE  L P  P CP+C+ ++  LGED +E
Sbjct  78   DTLTGRVY-DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAE  136

Query  139  QLARVAAAFKVIRTIRHKLCCPDCGHIEQPAMPSLPIEHSIAHPSLLADIAVSKFADHQP  198
            QL  + +AF+VIRT+R+K  C +C+ I Q++ PS PIE++IA P+LLA +  SK+A+H P
Sbjct  137  QLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTP  196

Query  199  LYRQSEIAARDGVTLDRASMGRWIGQISELCGPLVKAIQRYVLVPGKVHVDDTPVAVLAP  258
            LY QSEI +R+GV L R+ ++ W++    L +PL  A++ YV+  GK+H DDTPV VL P
Sbjct  197  LYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLP  256

Query  259  GHGKTVTGRFWVYVRDDHRSGSTEPAAVWFDFSSNRKGVHPQTRLAAFRGILQADAYAGF  318
            G+ KT TGR+W YVR+D+ +GS+ ++AVWF +S++RK++HPQT+LA F G+LQADAYAGF
Sbjct  257  GNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGF  316

Query  319  DQLYASGEIHEAACWDHARRYIYDVHARTPTSDTQHLLEMIGELYSIEADIRGKAPDERL  378
            ++LY +G I EAACW HARR I DVH R P++ T++ LE IG+LY+IEADI         
Sbjct  317  NELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADI---------  367

Query  379  RFRQEKSKPLLAKLEATIRMKLAMLSTKSALAKAINYSLNHWAALVFYCEDGRVEISNVL  438
                 ++ P   +L    R   ++L            SL+ W                  
Sbjct  368  -----RGMPAEQRLAERQRKTKPLLK-----------SLESW------------------  393

Query  439  AENALRCVALGRKNYLFVGSDSGGERAAAMYSLIGSAKLNGINPRAYLEYVLTHIADHKI  498
                LR     + + LF GS+ GGER+A +YSLIG+ KLN+++P +YL  VL  IAD  +
Sbjct  394  ----LR----EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPV  445

Query  499  SRINELLPWNVA  510
            +R++ELLPW +A
Sbjct  446  NRVSELLPWRIA  457

222) ROD_50111 in NC_013716


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  340 bits (1276),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 221/401 (56%), Positives = 295/401 (74%), Gaps = 11/401 (2%)

Query  12   LRALLQTQQDTIRQMAEYNRLLSLRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTE  71
            L+  L  Q+  I+ + E       +++    EI++L+A + KL+RM+FG  SEK+     
Sbjct  12   LKQRLAEQEALIHALQE-------KLSNREREIDHLQAQLDKLRRMNFGSRSEKV----S  60

Query  72   RQIQEAQERISALQEEMAETLGEQYDPALPSALRQSSARKPLPASLPRETRVIRpeeecc  131
            R+I + +  ++ LQ E     G  YDPA+  +LRQ+ +RKP+P SLPR+ + + P   CC
Sbjct  61   RRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCC  120

Query  132  pacggeLSPLGCDVSEQLELISSAFKVIETQRPKLTCCRCDHIVQAPVPSKPIVRSYAGA  191
            P CGG LS LG D +EQLEL+ SAF+VI T R K +C +CD IVQAP PS+PI R+ AG+
Sbjct  121  PNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGP  180

Query  192  GLLAHVVTGKYADHLPLYRQSEIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLM  251
            GLLA+V+T+KYA+H PLY QSEIY RQGVELSR+ L+ W +A   LL PL + L+ YV+ 
Sbjct  181  GLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT  240

Query  252  PGKVHADDIPVPVQEPGSGKTRTARLWVYVRDDRNAGSQMPAAVWFAYSPDRKGIHPQNH  311
             GK+HADD PV V  PG+ KT+T+RLW YVR+DRNAGS +++AVWFAYSPDRK+IHPQ H
Sbjct  241  DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTH  300

Query  312  LAGYSGVLQADAYGGYRALYESGRITEAACMAHARRKIHDVHARAPTDITTEALQRIGEL  371
            LA +SGVLQADAY+G+  LY +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+L
Sbjct  301  LACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  372  YAIEAEVRGCSAEQRLAARKARAVPLMQSLYDWIQTQMKTL  412
            YAIEA++RG +AEQRLA R+ ++ PL++SL  W++ +MKTL
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score = 72.6 bits (256),  Expect = 4e-14, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  LFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPRKVDLSS  522
            LF GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLP+++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

223) pRALTA_0138 in NC_010529


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  340 bits (1275),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 208/421 (50%), Positives = 297/421 (71%), Gaps = 8/421 (1%)

Query  9    DDIEALKALLLERDARIGHLQDVVESQKAATATDKAEIEHLKLLIAKLRRMQFGRRSEKl  68
            +DI +   +LL +  R+++ + ++++ +   +    EI+HL+  + KLRRM+FG RSEK+
Sbjct  2    NDISSDDIFLLKQ--RLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV  59

Query  69   drqieqlelrleeleadeGAAPIEIHRTP--RTAPEQVQRKPLPEHLPREFQTHWPESRD  126
             R+I Q+E  L+ L+ + ++    +   +  R   +   RKP+PE LPR+ +   P +  
Sbjct  60   SRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAP-  118

Query  127  TCTACGAPMKQLGEDVSEQLEYVPASFRVIRHVRPKLACSCCDHIAQAAAPSRPIERGMA  186
             C  CG+++  LGED +EQLE + ++FRVIR VR K AC+ CD I QA+APSRPIERG+A
Sbjct  119  CCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIA  178

Query  187  GPGLLAHVLVAKFADHLPLYRQSVIYAREGVELDRSLLAKWVGHSAALLQPLVDTLRRHV  246
            GPGLLA+VL +K+A+H PLY QS IY+R+GVEL RSLL+ WV+    LL PL ++L+  V
Sbjct  179  GPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYV  238

Query  247  MAATKLHADDTPVPVLAPGNGKTKTGRLWVYVRDDRTSGDATPPAVWFAYTPDRKGIHPQ  306
            M+  KLHADDTPV VL PGN KTKTGRLW YVR+DR +G A +PAVWFAY+PDRK+IHPQ
Sbjct  239  MTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQ  298

Query  307  QHLESFNGTLQADAYGGYQAIYETGRVAEAACWAHARRQFYELYAARPNSLNTEALERIG  366
             HL  F+G LQADAY+G++ +Y  G ++EAACWAHARR++ ++    P++L  EALE+IG
Sbjct  299  THLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIG  358

Query  367  ALYKIEEQIRGKPPDVRQAYRQAQARPLLDQLHAWLRATLETL---SRKSDTSRAILYGV  423
             LY IE +IRG P++ R A RQ +++PLL  L++WLR  + TL   S  ++   A+LY++
Sbjct  359  QLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418

Query  424  V  424
            +
Sbjct  419  I  419

224) ECO103_2294 in NC_013353


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  337 bits (1264),  Expect = 1e-93, Method: Compositional matrix adjust.
 Identities = 219/380 (58%), Positives = 290/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYCQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLYCQS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.1 bits (273),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

225) E2348C_1103 in NC_011601


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  337 bits (1266),  Expect = 6e-94, Method: Compositional matrix adjust.
 Identities = 220/356 (62%), Positives = 285/356 (81%), Gaps = 4/356 (1%)

Query  1    MLFGTRSEKLRREVEQAEALLKQREQESDRYSGREDDPLVPRQLRQSrhrrplpahlprE  60
            M FG+RSEK+ R + Q EA L++ ++ESD  +GR  DP V R LRQ+R R+P+P  LPR+
Sbjct  50   MNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRD  109

Query  61   IYRLepeesccpecggeLDYLGEVSAEQLELVSSALKVIRTERVKKACTKCDCIVEAPAP  120
              RL P  +CCP+CGG L YLGE +AEQLEL+ SA++VIRT R K ACT+CD IV+APAP
Sbjct  110  EKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAP  169

Query  121  SCPIERGVAGPGLLARVLTGKYCEHLPLYRQSEIFARQGVELSRALLSNWVDACCQLMTP  180
            S PIERG+AGPGLLARVLT+KY EH PLY QSEI++RQGVELSR+LLS WVDACC+L++P
Sbjct  170  SRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSP  229

Query  181  LNDALYRYVMNTRKLHTDDTPVKVLAPGLKKTKTGRIWTYVRDDRNAGSSSPPAVWFAYS  240
            L++AL  YVM   KLH+DDTPV+VL PG KKTKTGR+W+YVR+DRNAGS+ +PAVWFAYS
Sbjct  230  LEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYS  289

Query  241  SNRQGKHPEQHLRPFRGILQADAFTGYDRLFSAEREGSALTEVACWAHARRKIHDVYISS  300
            ++R++ HP+ HL  F G+LQADA++G++ L+      +++TE ACWAHARRKIHDV +  
Sbjct  290  PDRKSIHPQTHLACFSGVLQADAYAGFNELYR----NGGITEAACWAHARRKIHDVHVRI  345

Query  301  KSATAEEALKRISELYAIEDEIRGLPESERLAARQQRSKALLTSLHEWMVEKNGTL  356
             SA +EEAL +I++LYAIE +IRG+P  +RLA RQ+++K+LL SL+ W+ EK  TL
Sbjct  346  PSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score = 94.4 bits (339),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 42/65 (65%), Positives = 56/65 (87%), Gaps = 0/65 (0%)

Query  402  GKKNYVFFGSDHGGERGALLYGLIGTCRLNGIDPEAYLRHILSVLPEWPSNRVDELLPWN  461
             K + +FFGS+HGGERGALLY+LIGTC+LN++DPE+YLRH+L+V+++WP NRV ELLPW 
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  462  VVLTN  466
            + L  
Sbjct  456  IALPA  460

226) ECO26_1523 in NC_013361


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  335 bits (1258),  Expect = 3e-93, Method: Compositional matrix adjust.
 Identities = 218/380 (58%), Positives = 290/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYCQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLYCQS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVQGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA+++G +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.1 bits (273),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

227) tnpC in NC_005241


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  335 bits (1259),  Expect = 3e-93, Method: Compositional matrix adjust.
 Identities = 225/413 (55%), Positives = 304/413 (74%), Gaps = 4/413 (0%)

Query  9    PDDIEALKALVLAQRESIALMERALAVRSMEIEQLNLQISKLRRMQFGQKSEKLDRQIEQ  68
            +DDI  LK  +  Q   I  ++  L+ R  EI++L+ Q+ KLRRM+FG +SEK+ R+I Q
Sbjct  6    SDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQ  65

Query  69   LETRledllaeegaaetea-DPQATPPVRKKAVrkplpehlereerilepeteACPECGG  127
            +E+ L+ L  E ++      DP    P+R+   RKP+PE L R+E+ L P +  CP+CGG
Sbjct  66   MEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGG  125

Query  128  KLKPLGEDISEQLDIISSSFRVIRQVRRKKACACCDCIVQAAAPSRPIERGIATAGLHAH  187
             L  LGED +EQL+++ S+FRVIR VR K AC+ CD IVQA+APSRPIERGIA +GL A+
Sbjct  126  SLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLAR  185

Query  188  ILVAKYADHQPLYRQAAIYARQGVELDRTTMARGVGACGALVRPLVEALHRYVMMPGKVH  247
            +L +KYA+H PLY Q+ IY+RQGVEL R+ ++  V+AC  L+ PL EALH YVM  GK+H
Sbjct  186  VLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLH  245

Query  248  ADDTPLPVLAPGKGQTKTGRLWAYVRDDRASGSDAAPAVWFAYTPNRQGQHPQAHLAGFR  307
            ADDTP+ VL PG+ +TKTGRLWAYVR+DR +GS  APAVWFAY+P+R++ HPQ+HLA F 
Sbjct  246  ADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFS  305

Query  308  GILQADAYAGFNAVFTDGSVREAACMAHARRKVHDLHVRKATPTTTEALRRIGELYAIEA  367
            G+LQADAYAGFN ++ +G++ EAAC AHARRK+HD+HVR +++ T EAL +IG+LYAIEA
Sbjct  306  GVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEA  365

Query  368  EIRGKPPAvrqqvrqqrsrPLLDSLEVWLRERLLTL---STQSETTKAINYML  417
            +IRG P+  R   RQ++++PLL SLE WLRE++ TL   S ++    A+ Y L
Sbjct  366  DIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score = 77.9 bits (276),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 38/62 (62%), Positives = 51/62 (83%), Gaps = 0/62 (0%)

Query  449  GRKNFLFAGADSGGERAAAMYSLIGSCKLNGIDPEAYLRHVLARIADHPVNRIDGLLPWN  508
             + + LF G++ GGER+A +YSLIG+CKLN++DPE+YLRHVL+ IAD PVNR+  LLPW 
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  509  VA  510
            +A
Sbjct  456  IA  457

228) ECABU_c48760 in NC_017631


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  334 bits (1254),  Expect = 6e-93, Method: Compositional matrix adjust.
 Identities = 216/367 (59%), Positives = 286/367 (78%), Gaps = 15/367 (4%)

Query  60   HLRAQIEKLRRMLFGTRSEKLQREVEQAEAQLKQREQESDRYSGREDDPQVPRQLRQSrh  119
            HL+AQ++KLRRM FG+RSEK+ R + Q EA+L++ ++ESD  +GR  DP V R LRQ+R 
Sbjct  39   HLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRT  98

Query  120  rrplpahlprEIHRLepeesccpecgseLDYLGEVSAEQLELVSSALKVIRTVRVKKACT  179
            R+P+P  LPR+  RL P  +CCP+CG+ L YLGE +AEQLEL+ SA++VIRTVR K ACT
Sbjct  99   RKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACT  158

Query  180  KCDCIVEAPAPSRPIERGIAGSGLLARVLAGQYCEHLPLYRQSEIFARQGAELSRALLSN  239
            +CD IV+APAPSRPIERGIAG+GLLARVL+++Y EH PLY QSEI++RQG ELSR+LLS 
Sbjct  159  QCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSG  218

Query  240  WVDACCQLMTPLNDALYRYVMNTRKVHTDDIPVKVLAPGRKKAKTGRIWTYVRDDRNAGS  299
            WVDACC+L++PL++AL  YVM   K+H+DD PV+VL PG KK+KTGR+W+YVR+DRNAGS
Sbjct  219  WVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGS  278

Query  300  S-----------DRQGKHPVQHLRPFRGILQADAFSGYDRLFSAEREGGALTEVACWAHA  348
            +           DR++ HP  HL  F G+LQADA++G++ L+      G++TE ACWAHA
Sbjct  279  ALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR----NGGITEAACWAHA  334

Query  349  RRKIHDVYISSKSTTAEEALKRISELYAIEDEIRGLPESERLAARQQRSKALLTSLHEWM  408
            RRKIHDV +   S+ +EEAL +I++LYAIE +IRG+P  +RLA RQ+++K+LL SL+ W+
Sbjct  335  RRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWL  394

Query  409  VEKNGTL  415
             EK  TL
Sbjct  395  REKMKTL  401

229) O3K_23015 in NC_018658


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  333 bits (1248),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 223/356 (63%), Positives = 284/356 (80%), Gaps = 4/356 (1%)

Query  1    MLFGTRSEKLRREVEQAEALLKQREQESDRYSGREDDPLVPRQLRQSrhrrplpahlprE  60
            M FG+RSEK+ R + Q EA L++ ++ESD  +GR  DP V R LRQ+R R+P+P  LPR+
Sbjct  50   MNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRD  109

Query  61   IYRLepeesccpecggeLDYLGEVSAEQLELVSSALKVIRTERVKKACTKCDCIVEAPAP  120
              RL P  +CCP+CGG L YLGE +AEQLEL+ SA++VIRT R K ACT+CD IV+APAP
Sbjct  110  EKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAP  169

Query  121  SRPIERGIAGPGLLARVLTGKYCEHLPLYRQSEIFARQGVELSRALLSNWVDACCQLMTP  180
            SRPIERGIAGPGLLARVLT+KY EH PLY QSEI++RQGVELSR+LLS WVDACC+L++P
Sbjct  170  SRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSP  229

Query  181  LNDALYSYVMNTRKVHTDDTPVKVLAPGRKKAKTGYIWTYVRDDRNAGSPEPPAVWFAYS  240
            L++AL +YVM   K+H+DDTPV+VL PG KK+KTG +W+YVR+DRNAGS+ +PAVWFAYS
Sbjct  230  LEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYS  289

Query  241  PDHQGKHPEQHLRPFRGILQADAFAGYDRLFSAEREGGALTEAGCWAHARRKIHDVYIST  300
            PD+++ HP+ HL  F G+LQADA+AG++ L+      G++TEA+CWAHARRKIHDV +  
Sbjct  290  PDRKSIHPQTHLACFSGVLQADAYAGFNELYR----NGGITEAACWAHARRKIHDVHVRI  345

Query  301  KSATAEEALKLIGELYAIEHEIRGLPVSERLAVRQMQSKPLLTSLYKLMQEKEHTL  356
             SA +EEAL  IG+LYAIE +IRG+P  +RLA RQ ++KPLL SL   ++EK  TL
Sbjct  346  PSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score = 94.1 bits (338),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 42/65 (65%), Positives = 56/65 (87%), Gaps = 0/65 (0%)

Query  402  GKKNYVFFGSDHGGERGALLYGLIGTCRLNGIDPEAYLRHILSVLPEWPSNRVDELLPWN  461
             K + +FFGS+HGGERGALLY+LIGTC+LN++DPE+YLRH+L+V+++WP NRV ELLPW 
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  462  VVLTN  466
            + L  
Sbjct  456  IALPA  460

230) UMNK88_1268 in NC_017641


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  333 bits (1248),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 218/380 (58%), Positives = 288/380 (76%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKLACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYVIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R+P+ +T EAL++IG+LY IEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQEQMKTL  412
            ++ PL++SL  W++E+MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.6 bits (275),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 36/61 (60%), Positives = 49/61 (81%), Gaps = 0/61 (0%)

Query  463  LFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLTS  522
            LF GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L +
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

231) ETEC_0230 in NC_017633


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1247),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 218/380 (58%), Positives = 289/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.3 bits (274),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

232) ETEC_0346 in NC_017633


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1247),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 218/380 (58%), Positives = 289/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.3 bits (274),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

233) ETEC_1010 in NC_017633


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1247),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 218/380 (58%), Positives = 289/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.3 bits (274),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

234) ETEC_1228 in NC_017633


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1247),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 218/380 (58%), Positives = 289/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.3 bits (274),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

235) ETEC_1939 in NC_017633


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1247),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 218/380 (58%), Positives = 289/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.3 bits (274),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

236) ETEC_2616 in NC_017633


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1247),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 218/380 (58%), Positives = 289/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.3 bits (274),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

237) tnp1 in NC_017633


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1247),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 218/380 (58%), Positives = 289/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.3 bits (274),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

238) ETEC_3211 in NC_017633


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1247),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 218/380 (58%), Positives = 289/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.3 bits (274),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

239) ETEC_4459 in NC_017633


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1247),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 218/380 (58%), Positives = 289/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.3 bits (274),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

240) ETEC_4712 in NC_017633


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1247),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 218/380 (58%), Positives = 289/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.3 bits (274),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

241) ETEC_p666_0180 in NC_017722


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1247),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 218/380 (58%), Positives = 289/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.3 bits (274),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

242) ETEC_p666_0740 in NC_017722


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1247),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 218/380 (58%), Positives = 289/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.3 bits (274),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

243) join in NC_017724


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1247),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 218/380 (58%), Positives = 289/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.3 bits (274),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

244) O3M_26512 in NC_018654


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1247),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 218/380 (58%), Positives = 289/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.3 bits (274),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

245) O3O_25967 in NC_018662


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1247),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 218/380 (58%), Positives = 289/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.3 bits (274),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

246) O3K_26357 in NC_018666


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1247),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 218/380 (58%), Positives = 289/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.3 bits (274),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

247) ECO26_0606 in NC_013361


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1247),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 218/380 (58%), Positives = 289/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.3 bits (274),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

248) ECO26_0892 in NC_013361


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1247),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 218/380 (58%), Positives = 289/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.3 bits (274),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

249) ECO26_2210 in NC_013361


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1247),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 218/380 (58%), Positives = 289/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.3 bits (274),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

250) ECO26_3406 in NC_013361


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1247),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 218/380 (58%), Positives = 289/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.3 bits (274),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

251) ECO26_3947 in NC_013361


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1247),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 218/380 (58%), Positives = 289/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.3 bits (274),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

252) ECO26_4930 in NC_013361


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1247),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 218/380 (58%), Positives = 289/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.3 bits (274),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

253) ECO26_5440 in NC_013361


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1247),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 218/380 (58%), Positives = 289/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.3 bits (274),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

254) ECO26_5473 in NC_013361


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1247),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 218/380 (58%), Positives = 289/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.3 bits (274),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

255) SEEH1578_00175 in NC_021811


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1247),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 218/380 (58%), Positives = 289/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.3 bits (274),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

256) CFSAN002069_23230 in NC_021813


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1247),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 218/380 (58%), Positives = 289/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.3 bits (274),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

257) STU288_1p00250 in NC_021155


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1247),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 218/380 (58%), Positives = 289/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.3 bits (274),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

258) STU288_1p00980 in NC_021155


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1247),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 218/380 (58%), Positives = 289/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.3 bits (274),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

259) CFSAN001921_01925 in NC_021814


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1247),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 218/380 (58%), Positives = 289/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.3 bits (274),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

260) CFSAN001921_03765 in NC_021814


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1247),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 218/380 (58%), Positives = 289/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.3 bits (274),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

261) CFSAN001921_07750 in NC_021814


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1247),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 218/380 (58%), Positives = 289/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.3 bits (274),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

262) CFSAN001921_10390 in NC_021814


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1247),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 218/380 (58%), Positives = 289/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.3 bits (274),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

263) CFSAN001921_10895 in NC_021814


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1247),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 218/380 (58%), Positives = 289/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.3 bits (274),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

264) CFSAN001921_11955 in NC_021814


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1247),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 218/380 (58%), Positives = 289/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.3 bits (274),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

265) CFSAN001921_15755 in NC_021814


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1247),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 218/380 (58%), Positives = 289/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.3 bits (274),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

266) CFSAN001921_17255 in NC_021814


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1247),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 218/380 (58%), Positives = 289/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.3 bits (274),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

267) CFSAN001921_24540 in NC_021815


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1247),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 218/380 (58%), Positives = 289/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.3 bits (274),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

268) EcE24377A_D0063 in NC_009788


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1244),  Expect = 3e-92, Method: Compositional matrix adjust.
 Identities = 217/380 (58%), Positives = 288/380 (76%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHVRRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AH RRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 75.5 bits (267),  Expect = 6e-15, Method: Compositional matrix adjust.
 Identities = 34/61 (56%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVESEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V++E  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

269) EcE24377A_E0005 in NC_009790


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1244),  Expect = 3e-92, Method: Compositional matrix adjust.
 Identities = 217/380 (58%), Positives = 288/380 (76%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHVRRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AH RRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 75.5 bits (267),  Expect = 6e-15, Method: Compositional matrix adjust.
 Identities = 34/61 (56%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVESEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V++E  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

270) EcE24377A_E0047 in NC_009790


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1244),  Expect = 3e-92, Method: Compositional matrix adjust.
 Identities = 217/380 (58%), Positives = 288/380 (76%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHVRRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AH RRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 75.5 bits (267),  Expect = 6e-15, Method: Compositional matrix adjust.
 Identities = 34/61 (56%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVESEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V++E  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

271) EcE24377A_1757 in NC_009801


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1244),  Expect = 3e-92, Method: Compositional matrix adjust.
 Identities = 217/380 (58%), Positives = 288/380 (76%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHVRRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AH RRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 75.5 bits (267),  Expect = 6e-15, Method: Compositional matrix adjust.
 Identities = 34/61 (56%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVESEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V++E  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

272) EcE24377A_3368 in NC_009801


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1244),  Expect = 3e-92, Method: Compositional matrix adjust.
 Identities = 217/380 (58%), Positives = 288/380 (76%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHVRRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AH RRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 75.5 bits (267),  Expect = 6e-15, Method: Compositional matrix adjust.
 Identities = 34/61 (56%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVESEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V++E  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

273) EcE24377A_4879 in NC_009801


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1244),  Expect = 3e-92, Method: Compositional matrix adjust.
 Identities = 217/380 (58%), Positives = 288/380 (76%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHVRRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AH RRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 75.5 bits (267),  Expect = 6e-15, Method: Compositional matrix adjust.
 Identities = 34/61 (56%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVESEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V++E  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

274) ETEC_0554 in NC_017633


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  332 bits (1244),  Expect = 4e-92, Method: Compositional matrix adjust.
 Identities = 217/380 (58%), Positives = 289/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARKKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHAR+KIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.3 bits (274),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

275) STU288_09455 in NC_021151


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  331 bits (1241),  Expect = 4e-92, Method: Compositional matrix adjust.
 Identities = 216/378 (58%), Positives = 287/378 (76%), Gaps = 4/378 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMK  410
            ++ PL++SL  W++++MK
Sbjct  382  KTKPLLKSLESWLREKMK  399

276) ETEC_3203 in NC_017633


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  331 bits (1243),  Expect = 4e-92, Method: Compositional matrix adjust.
 Identities = 216/380 (57%), Positives = 289/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHIVAGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+++++KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.3 bits (274),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

277) ETEC_2144 in NC_017633


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  331 bits (1241),  Expect = 7e-92, Method: Compositional matrix adjust.
 Identities = 217/380 (58%), Positives = 288/380 (76%), Gaps = 4/380 (1%)

Query  33   LLQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHVRRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AH RRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 75.5 bits (267),  Expect = 6e-15, Method: Compositional matrix adjust.
 Identities = 34/61 (56%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVESEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V++E  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

278) EC042_pAA062 in NC_017627


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  330 bits (1240),  Expect = 7e-92, Method: Compositional matrix adjust.
 Identities = 217/380 (58%), Positives = 289/380 (77%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMANARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC A+ARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKTL  412
            ++ PL++SL  W++++MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.3 bits (274),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

279) Bxe_A2591 in NC_007951


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  330 bits (1239),  Expect = 9e-92, Method: Compositional matrix adjust.
 Identities = 200/401 (50%), Positives = 288/401 (72%), Gaps = 5/401 (1%)

Query  21   QQASIANMVREIAARDDEIERLKAQIDKLRRMYFGSKSEKLARQIDKLEAQLEDLTAGQG  80
            Q+A I  +   ++ R+ EI++L+AQ+DKLRRM FGS+SEK++R+I ++EA+L+ L    +
Sbjct  19   QEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESD  78

Query  81   VAETRWHQDKTSQAPPGRARTREPLPPHLPRDEIELTPD-PACPRCAAPMQRLGEDVSEQ  139
                R   D + Q P  ++RTR P+P  LPRDE  L P  P CP C++++  LGED +EQ
Sbjct  79   TLTGR-VYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQ  137

Query  140  LARVAAAFKVIRTIRHKLCCPDCGQIEQPAMPSLPIEHSIAHPSLLADIAVSKFADHQPL  199
            L  + +AF+VIRT+R+K  C +C+ I Q++ PS PIE++IA P+LLA +  SK+A+H PL
Sbjct  138  LELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPL  197

Query  200  YRQSEIAARDGVTLDRASMGRWMGQIAELCMPLVEALQRYTLRPGKLHVDDTPVAVLAPG  259
            Y QSEI +R+GV L R+ ++ W++    L  PL EAL+ Y +  GKLH DDTPV VL PG
Sbjct  198  YCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPG  257

Query  260  SGKTSTGRFWVYVRDDCRSGSTDPAAVWFDFSSDRKGIHPQSRLTGFRGILQADAYSGFD  319
            + KT TGR+W YVR+D  +GS+ ++AVWF +S+DRK+IHPQ++L+ F G+LQADAY+GF+
Sbjct  258  NKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFN  317

Query  320  KLYAGGQIHEAACWDHARRYVYDVHVHTPTPDTQKLLNMIGELYSIEAEIRGKPPDERLR  379
             LY  G I EAACW HARR + DVHV+ P++ T+  L+ IG+LY+IEA+IRG P+++RL 
Sbjct  318  ELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLA  377

Query  380  ARQEKSKPLLSTFEATIRAKLATL---SKKSALTGAINYSL  417
             RQ K+KPLL ++E+ +R K+ TL   S  ++  GA+ YSL
Sbjct  378  ERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score = 68.1 bits (239),  Expect = 1e-12, Method: Compositional matrix adjust.
 Identities = 33/62 (54%), Positives = 46/62 (75%), Gaps = 0/62 (0%)

Query  449  GRKNYLFLGSDSGGERAAAMYSLIATCKLNGVNPRAYLEYVLTHIADHKITRIDELLPWN  508
             + + LF+GS+ GGER+A +YSLI+TCKLN+V+P +YL  VL  IAD  + R+ ELLPW 
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  509  VV  510
            + 
Sbjct  456  IA  457

280) ROD_01921 in NC_013716


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  329 bits (1234),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 217/380 (58%), Positives = 288/380 (76%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQDAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPALPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDPA+  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKLACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLSGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HL+ +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTDITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaSLMQSLYDWIQTQMKTL  412
            ++ +L++SL  W++ +MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.9 bits (276),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 36/61 (60%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  LFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            LF GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

281) ROD_06431 in NC_013716


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  329 bits (1234),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 217/380 (58%), Positives = 288/380 (76%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQDAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPALPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDPA+  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKLACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLSGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HL+ +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTDITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaSLMQSLYDWIQTQMKTL  412
            ++ +L++SL  W++ +MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.9 bits (276),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 36/61 (60%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  LFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            LF GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

282) ROD_06821 in NC_013716


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  329 bits (1234),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 217/380 (58%), Positives = 288/380 (76%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQDAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPALPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDPA+  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKLACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLSGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HL+ +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTDITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaSLMQSLYDWIQTQMKTL  412
            ++ +L++SL  W++ +MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.9 bits (276),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 36/61 (60%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  LFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            LF GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

283) ROD_08991 in NC_013716


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  329 bits (1235),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 217/380 (58%), Positives = 288/380 (76%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQDAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPALPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDPA+  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKLACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLSGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HL+ +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTDITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaSLMQSLYDWIQTQMKTL  412
            ++ +L++SL  W++ +MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.9 bits (276),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 36/61 (60%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  LFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            LF GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

284) ROD_10351 in NC_013716


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  329 bits (1234),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 217/380 (58%), Positives = 288/380 (76%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQDAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPALPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDPA+  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKLACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLSGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HL+ +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTDITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaSLMQSLYDWIQTQMKTL  412
            ++ +L++SL  W++ +MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.9 bits (276),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 36/61 (60%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  LFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            LF GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

285) ROD_12861 in NC_013716


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  329 bits (1234),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 217/380 (58%), Positives = 288/380 (76%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQDAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPALPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDPA+  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKLACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLSGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HL+ +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTDITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaSLMQSLYDWIQTQMKTL  412
            ++ +L++SL  W++ +MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.9 bits (276),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 36/61 (60%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  LFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            LF GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

286) ROD_13911 in NC_013716


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  329 bits (1234),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 217/380 (58%), Positives = 288/380 (76%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQDAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPALPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDPA+  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKLACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLSGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HL+ +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTDITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaSLMQSLYDWIQTQMKTL  412
            ++ +L++SL  W++ +MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.9 bits (276),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 36/61 (60%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  LFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            LF GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

287) ROD_23611 in NC_013716


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  329 bits (1234),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 217/380 (58%), Positives = 288/380 (76%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQDAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPALPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDPA+  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKLACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLSGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HL+ +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTDITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaSLMQSLYDWIQTQMKTL  412
            ++ +L++SL  W++ +MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.9 bits (276),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 36/61 (60%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  LFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            LF GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

288) ROD_26411 in NC_013716


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  329 bits (1234),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 217/380 (58%), Positives = 288/380 (76%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQDAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPALPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDPA+  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKLACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLSGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HL+ +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTDITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaSLMQSLYDWIQTQMKTL  412
            ++ +L++SL  W++ +MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.9 bits (276),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 36/61 (60%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  LFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            LF GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

289) ROD_26481 in NC_013716


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  329 bits (1234),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 217/380 (58%), Positives = 288/380 (76%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQDAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPALPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDPA+  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKLACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLSGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HL+ +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTDITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaSLMQSLYDWIQTQMKTL  412
            ++ +L++SL  W++ +MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.9 bits (276),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 36/61 (60%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  LFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            LF GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

290) ROD_28231 in NC_013716


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  329 bits (1234),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 217/380 (58%), Positives = 288/380 (76%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQDAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPALPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDPA+  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKLACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLSGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HL+ +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTDITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaSLMQSLYDWIQTQMKTL  412
            ++ +L++SL  W++ +MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.9 bits (276),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 36/61 (60%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  LFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            LF GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

291) ROD_28321 in NC_013716


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  329 bits (1234),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 217/380 (58%), Positives = 288/380 (76%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQDAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPALPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDPA+  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKLACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLSGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HL+ +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTDITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaSLMQSLYDWIQTQMKTL  412
            ++ +L++SL  W++ +MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.9 bits (276),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 36/61 (60%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  LFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            LF GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

292) ROD_30161 in NC_013716


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  329 bits (1234),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 217/380 (58%), Positives = 288/380 (76%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQDAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPALPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDPA+  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKLACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLSGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HL+ +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTDITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaSLMQSLYDWIQTQMKTL  412
            ++ +L++SL  W++ +MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.9 bits (276),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 36/61 (60%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  LFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            LF GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

293) ROD_31891 in NC_013716


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  329 bits (1234),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 217/380 (58%), Positives = 288/380 (76%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQDAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPALPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDPA+  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKLACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLSGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HL+ +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTDITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaSLMQSLYDWIQTQMKTL  412
            ++ +L++SL  W++ +MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.9 bits (276),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 36/61 (60%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  LFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            LF GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

294) ROD_34321 in NC_013716


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  329 bits (1234),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 217/380 (58%), Positives = 288/380 (76%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQDAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPALPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDPA+  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKLACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLSGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HL+ +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTDITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaSLMQSLYDWIQTQMKTL  412
            ++ +L++SL  W++ +MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.9 bits (276),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 36/61 (60%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  LFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            LF GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

295) ROD_35321 in NC_013716


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  329 bits (1234),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 217/380 (58%), Positives = 288/380 (76%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQDAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPALPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDPA+  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKLACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLSGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HL+ +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTDITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaSLMQSLYDWIQTQMKTL  412
            ++ +L++SL  W++ +MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.9 bits (276),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 36/61 (60%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  LFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            LF GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

296) ROD_36251 in NC_013716


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  329 bits (1234),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 217/380 (58%), Positives = 288/380 (76%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQDAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPALPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDPA+  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKLACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLSGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HL+ +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTDITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaSLMQSLYDWIQTQMKTL  412
            ++ +L++SL  W++ +MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.9 bits (276),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 36/61 (60%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  LFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            LF GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

297) ROD_38851 in NC_013716


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  329 bits (1234),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 217/380 (58%), Positives = 288/380 (76%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQDAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPALPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDPA+  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKLACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLSGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HL+ +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTDITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaSLMQSLYDWIQTQMKTL  412
            ++ +L++SL  W++ +MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.9 bits (276),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 36/61 (60%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  LFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            LF GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

298) ROD_40711 in NC_013716


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  329 bits (1234),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 217/380 (58%), Positives = 288/380 (76%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQDAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPALPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDPA+  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKLACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLSGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HL+ +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTDITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaSLMQSLYDWIQTQMKTL  412
            ++ +L++SL  W++ +MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.9 bits (276),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 36/61 (60%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  LFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            LF GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

299) ROD_45801 in NC_013716


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  329 bits (1234),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 217/380 (58%), Positives = 288/380 (76%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQDAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPALPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDPA+  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKLACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLSGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HL+ +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTDITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaSLMQSLYDWIQTQMKTL  412
            ++ +L++SL  W++ +MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.9 bits (276),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 36/61 (60%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  LFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            LF GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

300) ROD_47731 in NC_013716


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  329 bits (1234),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 217/380 (58%), Positives = 288/380 (76%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQDAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPALPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDPA+  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKLACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLSGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HL+ +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTDITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaSLMQSLYDWIQTQMKTL  412
            ++ +L++SL  W++ +MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.9 bits (276),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 36/61 (60%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  LFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            LF GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

301) ROD_p1551 in NC_013717


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  329 bits (1234),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 217/380 (58%), Positives = 288/380 (76%), Gaps = 4/380 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQDAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPALPSALRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDPA+  +LRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKLACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQS  212
             SAF+VI T R K AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLSGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HL+ +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHARRKIHDVHARAPTDITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaSLMQSLYDWIQTQMKTL  412
            ++ +L++SL  W++ +MKTL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 77.9 bits (276),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 36/61 (60%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  463  LFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  522
            LF GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  523  Q  523
            +
Sbjct  461  E  461

302) bgla_4p1160 in NC_015383


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  329 bits (1234),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 194/380 (52%), Positives = 277/380 (73%), Gaps = 2/380 (0%)

Query  32   IASMVREIAARDDEIERLKAQIDKLRRMYFGSKSEKLARQIDKLEAQLEDLTAGQGAAET  91
            I ++   ++ R+ EI++L+AQ+DKLRRM FGS+SEK++R+I ++EA+L+ L    ++   
Sbjct  23   IHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTLTG  82

Query  92   RGHRDKTSTAPPGRAPTREPLPPHLPRDEIELKPD-PACPKCATTMQWLGEDVSEQLARV  150
            R   D +   P  ++ TR P+P  LPRDE  L P  P CP+C+ ++  LGED +EQL  +
Sbjct  83   RVY-DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  151  AAAFKVMRTIRHKLCCPDCGHIEQPAMPSLPIEHGIAHPSLLADIAVSKFADHQPLYRQS  210
             +AF+V+RT+R+K  C +C+ I Q++ PS PIE+GIA P+LLA +  SK+A+H PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  211  EIAARDGVTLDRGSMGRWLGQIAELCVPLVEAIQRYALVPGKVHVDDTPVAVLAPGNGKT  270
            EI +R+GV L R+ ++ W++    L  PL EA++ Y +  GK+H DDTPV VL PGN KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  271  VTGRFWVYVRDDRRSGSTDPAAVWFDFSSDRKGVHPQTRLAAFHGILQADAYSGFDQLYA  330
             TGR+W YVR+DR +GS+ ++AVWF +S+DRK++HPQT+LA F G+LQADAY+GF++LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  331  SGEILEAACWDHARRYIYDVHVRTPTPDTQQLLEMIGELYSIEADIRGKIPDERLRVRQE  390
            +G I EAACW HARR I DVHVR P++ T++ LE IG+LY+IEADIRG  +++RL  RQ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  391  KSKPLLVKFEVTIRAKLTTL  410
            K+KPLL  +E  +R K+ TL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 68.7 bits (241),  Expect = 8e-13, Method: Compositional matrix adjust.
 Identities = 34/62 (55%), Positives = 46/62 (75%), Gaps = 0/62 (0%)

Query  456  GRKNYLFVGSDSGGERAAAMYSLIGTCKLNGINPRAYLEYVLTHIADHKIARIDELLPWN  515
             + + LF GS+ GGER+A +YSLIGTCKLN+++P +YL  VL  IAD  + R+ ELLPW 
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  516  VA  517
            +A
Sbjct  456  IA  457

303) Bcep1808_6080 in NC_009254


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  329 bits (1234),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 197/382 (52%), Positives = 278/382 (73%), Gaps = 4/382 (1%)

Query  32   IANMVREIAARDDEIERLKAQIDKLRRMYFGSKSEKLARQIDKLEAQLEDLTAGQGAAET  91
            I  +   ++ R+ EI++L+AQ+DKLRRM FGS+SEK++R+I ++EA+L+ L   Q  ++T
Sbjct  23   IHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRL---QKESDT  79

Query  92   RGHRDKTSTSTAPPGRAPTREPLPPHLPRDEIELKPD-PACPKCATTMQWLGEDVSEQLA  150
               R   ++   P  ++ TR P+P  LPRDE  L P  P CP+C+ ++  LGED +EQL 
Sbjct  80   LTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLE  139

Query  151  RVAAAFKVMRTIRHKLCCPDCGHIEQPAMPSLPIEHGIAHPSLLADIAMSKFADHQPLYR  210
             + +AF+V+RT+R+K  C +C+ I Q++ PS PIE+GIA P+LLA +  SK+A+H PLY 
Sbjct  140  LMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYC  199

Query  211  QSEIAARDGVTLDRGSMGRWLGQIAELCVPLVEAIQRYALIPGKVHVDDTPVAVLAPGNG  270
            QSEI +R+GV L R+ ++ W++    L  PL EA++ Y +  GK+H DDTPV VL PGN 
Sbjct  200  QSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNK  259

Query  271  KTVTGRFWVYVRDDRRSGSIDPAAVWFDFSSDRKGVHPQTRLAAFHGILQADAYAGFDQL  330
            KT TGR+W YVR+DR +GS  ++AVWF +S+DRK++HPQT+LA F G+LQADAYAGF++L
Sbjct  260  KTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNEL  319

Query  331  FASGEIHEAACWDHARRYIYDVHARTPTPDTQQLLEMIGELYSIEADIRGKAPEERLRVR  390
            + +G I EAACW HARR I DVH R P++ T++ LE IG+LY+IEADIRG ++E+RL  R
Sbjct  320  YRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAER  379

Query  391  QEKTKPLLAKLEATIRAKLTTL  412
            Q KTKPLL  LE+ +R K+ TL
Sbjct  380  QRKTKPLLKSLESWLREKMKTL  401


 Score = 68.9 bits (242),  Expect = 6e-13, Method: Compositional matrix adjust.
 Identities = 34/62 (55%), Positives = 47/62 (76%), Gaps = 0/62 (0%)

Query  458  GRKNYLFVGSDSGGERAAAMYSLIGTCKLNGINPRAYLEYVLTHIADHKISRIDELLPWN  517
             + + LF GS+ GGER+A +YSLIGTCKLN+++P +YL  VL  IAD  ++R+ ELLPW 
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  518  VA  519
            +A
Sbjct  456  IA  457

304) PCA10_p0630 in NC_021506


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  329 bits (1235),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 199/396 (51%), Positives = 278/396 (71%), Gaps = 7/396 (1%)

Query  12   IQALKALVTAQRGEIEHLKLMIAKLRRTQFGRRSEQLD---GMldqlqltleelqvseaa  68
            I+AL+  ++ +  EI+HL+  + KLRR +FG RSE++    + ++     L+    + ++
Sbjct  23   IHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTLTG  82

Query  69   laspppaeshprppVRRKPLPAHLPREIHVHRPDTQC-PGCGGELRHLGDDVAEVLEYVP  127
                P+ +   R    RKP+P  LPR+     P + C P CGG L  LG+D AE LE + 
Sbjct  83   RVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMR  142

Query  128  ARFKVVRHVRPKLACRCCDGIVQVPAPSRPIARGLAGPGLLAHVLVSKYVDHLPLYRQSE  187
            + F+V+R VR K AC  CD IVQ PAPSRPI RG+AGPGLLA+VL SKY +H PLY QSE
Sbjct  143  SAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSE  202

Query  188  IYAREGVSLERSTMADWVGEASRLLQPLVGRLRQHVMTSNKVHADDTPIAVLAPGQGKTK  247
            IY+R+GV L RS +++WV+   RLL PL   L+  VMT  K+HADDTP+ VL PG+ KTK
Sbjct  203  IYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTK  262

Query  248  TGRLWTYVRDERPTGSSTPAAVWFAYSPDRKGEHPRAHLKGFAGTLQADGYAGFAQLYAA  307
            TGRLW+YVR++R +GS+ ++AVWFAYSPDRK+ HP++HL  F+G LQAD+YAGF +LY  
Sbjct  263  TGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYRN  322

Query  308  GTIHEAACWAHARRKFFDLHKALASPIAAEALQRIGALYAIEAEIRGQPPDQRRAVRQRR  367
            G I EAACWAHARRK+ D+H  ++S+++ EAL++IG LYAIEA+IRG P++QR A RQR+
Sbjct  323  GGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRK  382

Query  368  ASPLLAQFHAWLNHTLTQL---PSKSALSGAIYYAL  400
            + PLL  +++WL + +  L   ++ ++  GA+ Y+L
Sbjct  383  TKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score = 70.8 bits (249),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 35/65 (54%), Positives = 51/65 (79%), Gaps = 0/65 (0%)

Query  432  GRKNYLFVGSDAGGERAAAIYSLVGSAKLNALNPQAYLTHVLERIADYPINQLDDLLPWN  491
             + + LF GS+ GGER+A +YSL+G+ KLN ++P++YL HVL  IAD P+N++ +LLPW 
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  492  IALPT  496
            IALP+
Sbjct  456  IALPA  460

305) PCA10_p1630 in NC_021506


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  329 bits (1235),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 199/396 (51%), Positives = 278/396 (71%), Gaps = 7/396 (1%)

Query  12   IQALKALVTAQRGEIEHLKLMIAKLRRTQFGRRSEQLD---GMldqlqltleelqvseaa  68
            I+AL+  ++ +  EI+HL+  + KLRR +FG RSE++    + ++     L+    + ++
Sbjct  23   IHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTLTG  82

Query  69   laspppaeshprppVRRKPLPAHLPREIHVHRPDTQC-PGCGGELRHLGDDVAEVLEYVP  127
                P+ +   R    RKP+P  LPR+     P + C P CGG L  LG+D AE LE + 
Sbjct  83   RVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMR  142

Query  128  ARFKVVRHVRPKLACRCCDGIVQVPAPSRPIARGLAGPGLLAHVLVSKYVDHLPLYRQSE  187
            + F+V+R VR K AC  CD IVQ PAPSRPI RG+AGPGLLA+VL SKY +H PLY QSE
Sbjct  143  SAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSE  202

Query  188  IYAREGVSLERSTMADWVGEASRLLQPLVGRLRQHVMTSNKVHADDTPIAVLAPGQGKTK  247
            IY+R+GV L RS +++WV+   RLL PL   L+  VMT  K+HADDTP+ VL PG+ KTK
Sbjct  203  IYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTK  262

Query  248  TGRLWTYVRDERPTGSSTPAAVWFAYSPDRKGEHPRAHLKGFAGTLQADGYAGFAQLYAA  307
            TGRLW+YVR++R +GS+ ++AVWFAYSPDRK+ HP++HL  F+G LQAD+YAGF +LY  
Sbjct  263  TGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYRN  322

Query  308  GTIHEAACWAHARRKFFDLHKALASPIAAEALQRIGALYAIEAEIRGQPPDQRRAVRQRR  367
            G I EAACWAHARRK+ D+H  ++S+++ EAL++IG LYAIEA+IRG P++QR A RQR+
Sbjct  323  GGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRK  382

Query  368  ASPLLAQFHAWLNHTLTQL---PSKSALSGAIYYAL  400
            + PLL  +++WL + +  L   ++ ++  GA+ Y+L
Sbjct  383  TKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score = 70.8 bits (249),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 35/65 (54%), Positives = 51/65 (79%), Gaps = 0/65 (0%)

Query  432  GRKNYLFVGSDAGGERAAAIYSLVGSAKLNALNPQAYLTHVLERIADYPINQLDDLLPWN  491
             + + LF GS+ GGER+A +YSL+G+ KLN ++P++YL HVL  IAD P+N++ +LLPW 
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  492  IALPT  496
            IALP+
Sbjct  456  IALPA  460

306) SBO_2499 in NC_007613


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  328 bits (1232),  Expect = 3e-91, Method: Compositional matrix adjust.
 Identities = 220/356 (62%), Positives = 284/356 (80%), Gaps = 4/356 (1%)

Query  1    MLFGTRSEKLRREVEQAEALLKQREQDSDRYSGREDDPQVPRQLRQSrhrrplpehlpre  60
            M FG+RSEK+ R + Q EA L++ +++SD  +GR  DP V R LRQ+R R+P+PE LPR+
Sbjct  50   MNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRD  109

Query  61   INRLepeesccpecggeLDYLGEVSAEQLELVSSALKVIRTERVKKACTKCDCIVEAPAP  120
             +RL P  +CCP+CGG L YLGE +AEQLEL+ SA++VIRT R K ACT+CD IV+APAP
Sbjct  110  EKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAP  169

Query  121  SRPIERGIAGPGLLARVLTGKYCEHLPLYRQSEIFARQGVELSRALLSNLVDACCQLMTP  180
            SRPIERGIAGPGLLARVLT+KY EH PLY QSEI++RQGVELSR+LLS  VDACC+L++P
Sbjct  170  SRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSP  229

Query  181  LNDALYRYVMNSRKVHTDDTPVKVLAPGRKKAKTGYIWTYVRDDRNAGSPEPPAVWFAYS  240
            L++AL  YVM   K+H+DDTPV+VL PG KK+KTG +W+YVR+DRNAGS+ +PAVWFAYS
Sbjct  230  LEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYS  289

Query  241  PDHQGKHPEQHLSPFRGILQADAFNGYDRLFSAEREGGALTEAGCWAHARRKVHDVYIST  300
            PD+++ HP+ HL+ F G+LQADA+ G++ L+      G++TEA+CWAHARRK+HDV +  
Sbjct  290  PDRKSIHPQTHLACFSGVLQADAYAGFNELYR----NGGITEAACWAHARRKIHDVHVRI  345

Query  301  KSATAEEALKLIGELYAIEHEIRGLPVSERLAVRQMQSKPLLTSLYKLMQEKEHTL  356
             SA +EEAL  IG+LYAIE +IRG+P  +RLA RQ ++KPLL SL   ++EK  TL
Sbjct  346  PSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score = 93.6 bits (336),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 42/65 (65%), Positives = 56/65 (87%), Gaps = 0/65 (0%)

Query  402  GKKNFMFFGSDHGGERGALLYGLIGTCRLNGIDPEAYLRYILSVLPEWPSNRVDELLPWN  461
             K + +FFGS+HGGERGALLY+LIGTC+LN++DPE+YLR +L+V+++WP NRV ELLPW 
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  462  VALTN  466
            +AL  
Sbjct  456  IALPA  460

307) SBO_2716 in NC_007613


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  328 bits (1232),  Expect = 3e-91, Method: Compositional matrix adjust.
 Identities = 220/356 (62%), Positives = 284/356 (80%), Gaps = 4/356 (1%)

Query  1    MLFGTRSEKLRREVEQAEALLKQREQDSDRYSGREDDPQVPRQLRQSrhrrplpehlpre  60
            M FG+RSEK+ R + Q EA L++ +++SD  +GR  DP V R LRQ+R R+P+PE LPR+
Sbjct  50   MNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRD  109

Query  61   INRLepeesccpecggeLDYLGEVSAEQLELVSSALKVIRTERVKKACTKCDCIVEAPAP  120
             +RL P  +CCP+CGG L YLGE +AEQLEL+ SA++VIRT R K ACT+CD IV+APAP
Sbjct  110  EKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAP  169

Query  121  SRPIERGIAGPGLLARVLTGKYCEHLPLYRQSEIFARQGVELSRALLSNLVDACCQLMTP  180
            SRPIERGIAGPGLLARVLT+KY EH PLY QSEI++RQGVELSR+LLS  VDACC+L++P
Sbjct  170  SRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSP  229

Query  181  LNDALYRYVMNSRKVHTDDTPVKVLAPGRKKAKTGYIWTYVRDDRNAGSPEPPAVWFAYS  240
            L++AL  YVM   K+H+DDTPV+VL PG KK+KTG +W+YVR+DRNAGS+ +PAVWFAYS
Sbjct  230  LEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYS  289

Query  241  PDHQGKHPEQHLSPFRGILQADAFNGYDRLFSAEREGGALTEAGCWAHARRKVHDVYIST  300
            PD+++ HP+ HL+ F G+LQADA+ G++ L+      G++TEA+CWAHARRK+HDV +  
Sbjct  290  PDRKSIHPQTHLACFSGVLQADAYAGFNELYR----NGGITEAACWAHARRKIHDVHVRI  345

Query  301  KSATAEEALKLIGELYAIEHEIRGLPVSERLAVRQMQSKPLLTSLYKLMQEKEHTL  356
             SA +EEAL  IG+LYAIE +IRG+P  +RLA RQ ++KPLL SL   ++EK  TL
Sbjct  346  PSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score = 93.6 bits (336),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 42/65 (65%), Positives = 56/65 (87%), Gaps = 0/65 (0%)

Query  402  GKKNFMFFGSDHGGERGALLYGLIGTCRLNGIDPEAYLRYILSVLPEWPSNRVDELLPWN  461
             K + +FFGS+HGGERGALLY+LIGTC+LN++DPE+YLR +L+V+++WP NRV ELLPW 
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  462  VALTN  466
            +AL  
Sbjct  456  IALPA  460

308) Bcep1808_5541 in NC_009254


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  325 bits (1220),  Expect = 3e-90, Method: Compositional matrix adjust.
 Identities = 196/382 (52%), Positives = 277/382 (73%), Gaps = 4/382 (1%)

Query  32   IANMVREIAARDDEIERLKAQTDKLRRMYFGSKSEKLARQIDKLEAQLEDLTAGQGAAET  91
            I  +   ++ R+ EI++L+AQ DKLRRM FGS+SEK++R+I ++EA+L+ L   Q  ++T
Sbjct  23   IHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRL---QKESDT  79

Query  92   RGHRDKTSTSTAPPGRAPTREPLPPHLPRDEIELKPD-PACPKCATTMQWLGEDVSEQLA  150
               R   ++   P  ++ TR P+P  LPRDE  L P  P CP+C+ ++  LGED +EQL 
Sbjct  80   LTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLE  139

Query  151  RVAAAFKVMRTIRHKLCCPDCGHIEQPAMPSLPIEHGIAHPSLLADIAMSKFADHQPLYR  210
             + +AF+V+RT+R+K  C +C+ I Q++ PS PIE+GIA P+LLA +  SK+A+H PLY 
Sbjct  140  LMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYC  199

Query  211  QSEIAARDGVTLDRGSMGRWLGQIAELCVPLVEAIQRYALVPGKVHVDDTPVAVLAPGNG  270
            QSEI +R+GV L R+ ++ W++    L  PL EA++ Y +  GK+H DDTPV VL PGN 
Sbjct  200  QSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNK  259

Query  271  KTVTGRFWVYVRDDRRSGSIDPAAVWFDFSSDRKGVHPQTRLAAFHGILQADAYAGFDQL  330
            KT TGR+W YVR+DR +GS  ++AVWF +S+DRK++HPQT+LA F G+LQADAYAGF++L
Sbjct  260  KTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNEL  319

Query  331  FASGEIHEAACWDHARWYIYDVHARTPTPDTQQLLEMIGELYSIEADIRGKAPEERLRVR  390
            + +G I EAACW HAR+ I DVH R P++ T++ LE IG+LY+IEADIRG ++E+RL  R
Sbjct  320  YRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAER  379

Query  391  QEKTKPLLAKLEATIRAKLTTL  412
            Q KTKPLL  LE+ +R K+ TL
Sbjct  380  QRKTKPLLKSLESWLREKMKTL  401

309) Bphyt_6521 in NC_010676


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  321 bits (1205),  Expect = 4e-89, Method: Compositional matrix adjust.
 Identities = 210/404 (52%), Positives = 293/404 (73%), Gaps = 6/404 (1%)

Query  33   LANLRDTLTTLQKTLSDRALEIEHLKLWIAKLQRMQFGRKSEKIDRQIEQLELRLEDLQA  92
            LA+    + +LQ  LS+R  EI+HL+  + KL+RM+FG +SEK+ R+I Q+E  L+ LQ 
Sbjct  16   LAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQK  75

Query  93   DDGA--ANVDAPIRSRPEGRKSTGRKPLPDHLQRIDVVHLPDDACCPQCGSALGELGEDV  150
            + ++  + V  P   RP  R++  RKP+P+ L R +   LP  +CCP+CG++L+ LGED 
Sbjct  76   ESDTLTGRVYDPAVQRPL-RQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDT  134

Query  151  AEQLDYVPGHWRVIRHRRLKKACTCCDCIVQApppgrpidrgipgpgLLAHVLVGKFCDH  210
            AEQL+ + +  RVIR  R K ACT CD IVQAP+P+RPI+RGI+GPGLLA+VL +K+ +H
Sbjct  135  AEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEH  194

Query  211  LPLYRQPVIYARDGVELSRSTLADWVGPCSALLRPLVEVIRQYVMAASKIHADDTPVPVL  270
             PLY Q+ IY+R+GVELSRS L++WV++C  LL PL E ++ YVM+ +K+HADDTPV VL
Sbjct  195  TPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVL  254

Query  271  EPGNGKTRTARLWTYIRDDRPAGSKDAPAVWFAYSPSRAGEYPQAHLKDFKGALQADAFA  330
             PGN KT+T+RLW+Y+R+DR AGS  APAVWFAYSP R +  PQ+HL  F G LQADA+A
Sbjct  255  LPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYA  314

Query  331  GYNAIYEVGDVREAGCMAHARRKFHDLFVARKNEVNTEALRRIGELYAIEAAIRGKPPDK  390
            G+N +Y  G++ EA+C AHARRK+HD+ V   + +  EAL +IG+LYAIEA IRG P+++
Sbjct  315  GFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQ  374

Query  391  RKRVRQEQARPLLDSFETWLRSTLSTV---SQKGDAAKAINYAL  431
            R   RQ +++PLL S+E+WLR  + T+   S  G+   A+ Y+L
Sbjct  375  RLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score = 71.3 bits (251),  Expect = 1e-13, Method: Compositional matrix adjust.
 Identities = 38/61 (63%), Positives = 51/61 (84%), Gaps = 0/61 (0%)

Query  464  RKNFLHFGSDRGGERGAAVYTLVGTAKLNGLDPEAYLRHVITRIAEHPVNRVDELLPWVV  523
            + + L FGS++GGERGA +Y+L+GT KLN++DPE+YLRHV+  IA+ PVNRV ELLPW +
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRI  456

Query  524  A  524
            A
Sbjct  457  A  457

310) EcSMS35_3126 in NC_010498


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  321 bits (1205),  Expect = 5e-89, Method: Compositional matrix adjust.
 Identities = 216/381 (57%), Positives = 287/381 (76%), Gaps = 5/381 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSAALRQSSACKQLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLEL  152
            G  YDP +  + LRQ+ + K +P SLPR+ + + P   CCP CGG LS LG D +EQLEL
Sbjct  82   GRVYDPAVQRP-LRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLEL  140

Query  153  ISSAFKVIETQRPKQACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLPLYRQ  212
            + SAF+VI T R K+AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H PLY Q
Sbjct  141  MRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQ  200

Query  213  SEIYRRQGVELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEPGSGK  272
            SEIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ K
Sbjct  201  SEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKK  260

Query  273  TRTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALY  332
            T+T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY
Sbjct  261  TKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELY  320

Query  333  ESGRITEAACMAHARRKIHDVHARAPTYITTEALQRIGELYAIEAEVRGCSaeqrlaark  392
             +G ITEAAC AHARRKIHDVH R P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+
Sbjct  321  RNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQ  380

Query  393  araaPLMQSLYDWIQQQMKTL  413
             ++ PL++SL  W++++MKTL
Sbjct  381  RKTKPLLKSLESWLREKMKTL  401


 Score = 77.1 bits (273),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 35/61 (58%), Positives = 50/61 (82%), Gaps = 0/61 (0%)

Query  464  MFAGSDSGGEHAAVLYSLIGTCRLNNVEPEKWLRYVIEHIQDWPANRVRDLLPWKVDLSS  523
            +F GS+ GGE++A+LYSLIGTC+LN+V+PE  LR V+  I DWP NRV +LLPW++ L++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIALPA  460

Query  524  Q  524
            +
Sbjct  461  E  461

311) Bcep18194_A4976 in NC_007510


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  318 bits (1191),  Expect = 5e-88, Method: Compositional matrix adjust.
 Identities = 197/385 (52%), Positives = 277/385 (72%), Gaps = 6/385 (1%)

Query  45   EIARLKLLIDKLKRMQFGRKSeqlareierlelrledlSAGSSVADVQHAKVRREKPATG  104
            EI +L+  +DKL+RM+FG +SE+++R I ++E  L+ L   S     +      ++P   
Sbjct  36   EIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLR-  94

Query  105  GESSAREPLPPHLPRED-RVLKPDSICPKCDGTMQSLGEDVSEQLARVAAMFKVIRTIRH  163
             ++ +R P+P  LPR++ R+L + + CP+C+G++  LGED +EQL  + + F+VIRT+R+
Sbjct  95   -QTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVRE  153

Query  164  KMVCPSCGHIEQPSMPGLPIERSIAHPSLLADILVSKYADHAPLYRQSEIAARDGVTLDR  223
            K  C  C+ I Q++ P+ PIER+IA P+LLA +L SKYA+H+PLY QSEI +R+GV L R
Sbjct  154  KHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSR  213

Query  224  ASMGRWVGQCEALCRPLTDALRRYTMAGTKLHADDTPIPVLAPGNKKTKTGRLWVYVRDD  283
            + ++ WV+ C  L  PL +AL+ Y M++ KLHADDTP+ VL PGNKKTKTGRLW YVR+D
Sbjct  214  SLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRND  273

Query  284  SRSGSTEPAAVWFAYSPDRKGIHPQTHLAGFEGILQADAYGGFDELYVNGKICEAACWDH  343
              +GS+ ++AVWFAYSPDRK+IHPQTHLA F G+LQADAY+GF+ELY NG I EAACW H
Sbjct  274  RNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAH  333

Query  344  ARRKYYEVHASTPTDETKSLLEMIGELYSIEADIRGKPPDERKRVRHEKSKPLLEAFEAR  403
            ARRK  +VH   P+  T   LE IG+LY+IEADIRG P+++R   R+ K+KPLL ++E++
Sbjct  334  ARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESW  393

Query  404  IRGKLATL---SRKSELAGAIQYSL  425
            +R K+ TL   S  +   GA+ YSL
Sbjct  394  LREKMKTLFFGSGHGGERGALLYSL  418


 Score = 66.0 bits (231),  Expect = 5e-12, Method: Compositional matrix adjust.
 Identities = 34/62 (55%), Positives = 46/62 (75%), Gaps = 0/62 (0%)

Query  457  GRKNFLFAGSDSGGERAAAMYSLLGTCKLSGINPRAYLEYVLTYIADHVANRVDELLPWN  516
             + + LF GS+ GGER+A +YSL+GTCKL++++P +YL  VL  IAD   NRV ELLPW 
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  517  VA  518
            +A
Sbjct  456  IA  457

312) PT7_0873 in NC_015458


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  314 bits (1179),  Expect = 5e-87, Method: Compositional matrix adjust.
 Identities = 182/375 (49%), Positives = 277/375 (74%), Gaps = 3/375 (0%)

Query  53   QEKQFDKQ-EIQRLMLLLFKLKRQVFGQKSEKLLRQIDQleleleelHINQGERAQKT--  109
            QEK  +++ EI++L   L KL+R  FG +SEK+ R+I Q+E +L+ L+ + +  + +   
Sbjct  27   QEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYD  86

Query  110  ESITPTarpaparrpMPEHLPRDIQEHLPQAPACPDCGGAWQRLGEDISEVLEYIPSSLR  169
             ++    R + +R+P PE LPRD +  LP AP CP+CGG+   LGED +E LE + S++R
Sbjct  87   PAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFR  146

Query  170  VVRHVRPRLSCRCCDRMAQAPAPSRPIARSFAGPGLLSHVMVSKYLDHQPLYRQCQIFGR  229
            V+R VR + +C  CD + QAPAPSRPI R++AGPGLL++V+ SKY +H PLY Q +I+GR
Sbjct  147  VIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGR  206

Query  230  ENVDLSESTMGDWVGGTHHLLRPLLDALQRYVFSSAKLHTDDTPINVLAPGAGKTRQARL  289
            + V+LS S +++WV++  +LL PL +AL+ YV + +KLH+DDTP++VL PG  KT+ +RL
Sbjct  207  QGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRL  266

Query  290  WVYTRDDRPSGDTAAPAVWFRYSPDRKGIHPQTHLKDYAGIVQADAFAGYDKVYATGRVI  349
            W Y R+DR +G + APAVWF YSPDRK+IHPQTHL  ++G++QADA+AG++ +Y  G + 
Sbjct  267  WAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGIT  326

Query  350  EAGCWAHARRRFYDIHAKQATPITTHVLDRIGALYKIESGIRGSPPEVRRAARQEQAEPI  409
            EA+CWAHARR++ D+H + ++++T + L++IG LY IE++IRG P+E R A RQ ++ P+
Sbjct  327  EAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPL  386

Query  410  VIALHAWLREQLPTL  424
            + +L++WLRE++ TL
Sbjct  387  LKSLESWLREKMKTL  401


 Score = 78.1 bits (277),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 40/62 (65%), Positives = 53/62 (86%), Gaps = 0/62 (0%)

Query  471  RKNYLFLGSDAGGERAATMYSLLGTAKLNGINPEAYLRHVLTVIADHPVNRVDELLPWNV  530
            + + LF+GS+ GGER+A +YSL+GT KLN+++PE+YLRHVL VIAD PVNRV ELLPW +
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRI  456

Query  531  TL  532
            +L
Sbjct  457  AL  458

313) PT7_0898 in NC_015458


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  314 bits (1179),  Expect = 5e-87, Method: Compositional matrix adjust.
 Identities = 182/375 (49%), Positives = 277/375 (74%), Gaps = 3/375 (0%)

Query  53   QEKQFDKQ-EIQRLMLLLFKLKRQVFGQKSEKLLRQIDQleleleelHINQGERAQKT--  109
            QEK  +++ EI++L   L KL+R  FG +SEK+ R+I Q+E +L+ L+ + +  + +   
Sbjct  27   QEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYD  86

Query  110  ESITPTarpaparrpMPEHLPRDIQEHLPQAPACPDCGGAWQRLGEDISEVLEYIPSSLR  169
             ++    R + +R+P PE LPRD +  LP AP CP+CGG+   LGED +E LE + S++R
Sbjct  87   PAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFR  146

Query  170  VVRHVRPRLSCRCCDRMAQAPAPSRPIARSFAGPGLLSHVMVSKYLDHQPLYRQCQIFGR  229
            V+R VR + +C  CD + QAPAPSRPI R++AGPGLL++V+ SKY +H PLY Q +I+GR
Sbjct  147  VIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGR  206

Query  230  ENVDLSESTMGDWVGGTHHLLRPLLDALQRYVFSSAKLHTDDTPINVLAPGAGKTRQARL  289
            + V+LS S +++WV++  +LL PL +AL+ YV + +KLH+DDTP++VL PG  KT+ +RL
Sbjct  207  QGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRL  266

Query  290  WVYTRDDRPSGDTAAPAVWFRYSPDRKGIHPQTHLKDYAGIVQADAFAGYDKVYATGRVI  349
            W Y R+DR +G + APAVWF YSPDRK+IHPQTHL  ++G++QADA+AG++ +Y  G + 
Sbjct  267  WAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGIT  326

Query  350  EAGCWAHARRRFYDIHAKQATPITTHVLDRIGALYKIESGIRGSPPEVRRAARQEQAEPI  409
            EA+CWAHARR++ D+H + ++++T + L++IG LY IE++IRG P+E R A RQ ++ P+
Sbjct  327  EAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPL  386

Query  410  VIALHAWLREQLPTL  424
            + +L++WLRE++ TL
Sbjct  387  LKSLESWLREKMKTL  401


 Score = 78.1 bits (277),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 40/62 (65%), Positives = 53/62 (86%), Gaps = 0/62 (0%)

Query  471  RKNYLFLGSDAGGERAATMYSLLGTAKLNGINPEAYLRHVLTVIADHPVNRVDELLPWNV  530
            + + LF+GS+ GGER+A +YSL+GT KLN+++PE+YLRHVL VIAD PVNRV ELLPW +
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRI  456

Query  531  TL  532
            +L
Sbjct  457  AL  458

314) PT7_2218 in NC_015458


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  314 bits (1179),  Expect = 5e-87, Method: Compositional matrix adjust.
 Identities = 182/375 (49%), Positives = 277/375 (74%), Gaps = 3/375 (0%)

Query  53   QEKQFDKQ-EIQRLMLLLFKLKRQVFGQKSEKLLRQIDQleleleelHINQGERAQKT--  109
            QEK  +++ EI++L   L KL+R  FG +SEK+ R+I Q+E +L+ L+ + +  + +   
Sbjct  27   QEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYD  86

Query  110  ESITPTarpaparrpMPEHLPRDIQEHLPQAPACPDCGGAWQRLGEDISEVLEYIPSSLR  169
             ++    R + +R+P PE LPRD +  LP AP CP+CGG+   LGED +E LE + S++R
Sbjct  87   PAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFR  146

Query  170  VVRHVRPRLSCRCCDRMAQAPAPSRPIARSFAGPGLLSHVMVSKYLDHQPLYRQCQIFGR  229
            V+R VR + +C  CD + QAPAPSRPI R++AGPGLL++V+ SKY +H PLY Q +I+GR
Sbjct  147  VIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGR  206

Query  230  ENVDLSESTMGDWVGGTHHLLRPLLDALQRYVFSSAKLHTDDTPINVLAPGAGKTRQARL  289
            + V+LS S +++WV++  +LL PL +AL+ YV + +KLH+DDTP++VL PG  KT+ +RL
Sbjct  207  QGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRL  266

Query  290  WVYTRDDRPSGDTAAPAVWFRYSPDRKGIHPQTHLKDYAGIVQADAFAGYDKVYATGRVI  349
            W Y R+DR +G + APAVWF YSPDRK+IHPQTHL  ++G++QADA+AG++ +Y  G + 
Sbjct  267  WAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGIT  326

Query  350  EAGCWAHARRRFYDIHAKQATPITTHVLDRIGALYKIESGIRGSPPEVRRAARQEQAEPI  409
            EA+CWAHARR++ D+H + ++++T + L++IG LY IE++IRG P+E R A RQ ++ P+
Sbjct  327  EAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPL  386

Query  410  VIALHAWLREQLPTL  424
            + +L++WLRE++ TL
Sbjct  387  LKSLESWLREKMKTL  401


 Score = 78.1 bits (277),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 40/62 (65%), Positives = 53/62 (86%), Gaps = 0/62 (0%)

Query  471  RKNYLFLGSDAGGERAATMYSLLGTAKLNGINPEAYLRHVLTVIADHPVNRVDELLPWNV  530
            + + LF+GS+ GGER+A +YSL+GT KLN+++PE+YLRHVL VIAD PVNRV ELLPW +
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRI  456

Query  531  TL  532
            +L
Sbjct  457  AL  458

315) PT7_3177 in NC_015458


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  314 bits (1179),  Expect = 5e-87, Method: Compositional matrix adjust.
 Identities = 182/375 (49%), Positives = 277/375 (74%), Gaps = 3/375 (0%)

Query  53   QEKQFDKQ-EIQRLMLLLFKLKRQVFGQKSEKLLRQIDQleleleelHINQGERAQKT--  109
            QEK  +++ EI++L   L KL+R  FG +SEK+ R+I Q+E +L+ L+ + +  + +   
Sbjct  27   QEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYD  86

Query  110  ESITPTarpaparrpMPEHLPRDIQEHLPQAPACPDCGGAWQRLGEDISEVLEYIPSSLR  169
             ++    R + +R+P PE LPRD +  LP AP CP+CGG+   LGED +E LE + S++R
Sbjct  87   PAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFR  146

Query  170  VVRHVRPRLSCRCCDRMAQAPAPSRPIARSFAGPGLLSHVMVSKYLDHQPLYRQCQIFGR  229
            V+R VR + +C  CD + QAPAPSRPI R++AGPGLL++V+ SKY +H PLY Q +I+GR
Sbjct  147  VIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGR  206

Query  230  ENVDLSESTMGDWVGGTHHLLRPLLDALQRYVFSSAKLHTDDTPINVLAPGAGKTRQARL  289
            + V+LS S +++WV++  +LL PL +AL+ YV + +KLH+DDTP++VL PG  KT+ +RL
Sbjct  207  QGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRL  266

Query  290  WVYTRDDRPSGDTAAPAVWFRYSPDRKGIHPQTHLKDYAGIVQADAFAGYDKVYATGRVI  349
            W Y R+DR +G + APAVWF YSPDRK+IHPQTHL  ++G++QADA+AG++ +Y  G + 
Sbjct  267  WAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGIT  326

Query  350  EAGCWAHARRRFYDIHAKQATPITTHVLDRIGALYKIESGIRGSPPEVRRAARQEQAEPI  409
            EA+CWAHARR++ D+H + ++++T + L++IG LY IE++IRG P+E R A RQ ++ P+
Sbjct  327  EAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPL  386

Query  410  VIALHAWLREQLPTL  424
            + +L++WLRE++ TL
Sbjct  387  LKSLESWLREKMKTL  401


 Score = 78.1 bits (277),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 40/62 (65%), Positives = 53/62 (86%), Gaps = 0/62 (0%)

Query  471  RKNYLFLGSDAGGERAATMYSLLGTAKLNGINPEAYLRHVLTVIADHPVNRVDELLPWNV  530
            + + LF+GS+ GGER+A +YSL+GT KLN+++PE+YLRHVL VIAD PVNRV ELLPW +
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRI  456

Query  531  TL  532
            +L
Sbjct  457  AL  458

316) SFxv_4852 in NC_017319


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  312 bits (1171),  Expect = 2e-86, Method: Compositional matrix adjust.
 Identities = 214/379 (57%), Positives = 285/379 (76%), Gaps = 4/379 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQILEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSPLRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  PLRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKLACCRCDHIVQAPVPSKPIARSYagagllahvvagKYADYLPLYRQS  212
             SAF+VI T R K AC +CD IVQAP PS+PI R+ AG+GLLA+V+++KYA+  PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDILRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSEMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHVRRKIHDVHARVPTDITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AH RRKIHDVH R+P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKI  411
            ++ PL++SL  W++++MK 
Sbjct  382  KTKPLLKSLESWLREKMKT  400

317) CP0020 in NC_004851


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  312 bits (1171),  Expect = 2e-86, Method: Compositional matrix adjust.
 Identities = 214/379 (57%), Positives = 285/379 (76%), Gaps = 4/379 (1%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQILEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSPLRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  PLRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKLACCRCDHIVQAPVPSKPIARSYagagllahvvagKYADYLPLYRQS  212
             SAF+VI T R K AC +CD IVQAP PS+PI R+ AG+GLLA+V+++KYA+  PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDILRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSEMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAACMAHVRRKIHDVHARVPTDITTEALQRIGELYAIEAEVRGCSaeqrlaarka  392
            +G ITEAAC AH RRKIHDVH R+P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  393  raaPLMQSLYDWIQQQMKI  411
            ++ PL++SL  W++++MK 
Sbjct  382  KTKPLLKSLESWLREKMKT  400

318) GEM_5831 in NC_018514


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  312 bits (1169),  Expect = 3e-86, Method: Compositional matrix adjust.
 Identities = 195/394 (50%), Positives = 278/394 (71%), Gaps = 13/394 (3%)

Query  20   EQQASIAKMRQEIAERDREIVERDQELERLKAQIDKLRRMHFGRKSEQVDRQIDRLETQL  79
            EQ+A I  +++ +++R+REI       ++L+AQ+DKLRRM+FG +SE+V R+I ++E++L
Sbjct  18   EQEALIHALQEKLSNREREI-------DHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADL  70

Query  80   EDLaagsgvadvrrararasssgasaasaKEALAPHlpreerelepDSICPKCNNAMELL  139
            + L   S+    R   +    +   + + K    +    E R L + + CP+C  ++  L
Sbjct  71   NRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYL  130

Query  140  GEDVSEQLARVTAMFKVIRTIRRKRICAGCGHIAQPPMPGLPIERSIAHPSLLAEIIVAK  199
            GED +EQL  + + F+VIRT+R K+ C+ C+ I Q+P P+ PIER+IA P+LLA ++ +K
Sbjct  131  GEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSK  190

Query  200  YANHTPLYRQSEIAARDGVRLDRATMARWVGQCEELCRLLT---EALRRYTMATAKLHAD  256
            YA+HTPLY QSEI +R+GV L R+ ++ WV+ C   CRLL+   EAL+ Y M+ +KLHAD
Sbjct  191  YAEHTPLYCQSEIYGRQGVELSRSLLSGWVDAC---CRLLSPLEEALHGYVMTDGKLHAD  247

Query  257  DTPIPVLAPGNKKTKTGRLWVYVRDDRRSGSRDPAAVWFAYSPDRKGIHPQTHLAGFKGV  316
            DTP+ VL PGNKKTKTGRLW YVR+DR +GS  ++AVWFAYSPDRK+IHPQTHLA F GV
Sbjct  248  DTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGV  307

Query  317  LQGDGYAGFNELTESGKVRLAFCWDHARRYVFNVHETAPSETTKQWLDMIGEFYGIEADI  376
            LQ+D+YAGFNEL  +G +  A CW HARR + +VH   PS  T + L+ IG++Y+IEADI
Sbjct  308  LQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADI  367

Query  377  RGKPPDERRRVRQEKSSPLLAALETSMREKLATL  410
            RG P+++R   RQ K+ PLL +LE+ +REK+ TL
Sbjct  368  RGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score = 65.8 bits (230),  Expect = 5e-12, Method: Compositional matrix adjust.
 Identities = 33/57 (58%), Positives = 44/57 (78%), Gaps = 0/57 (0%)

Query  461  MFAGSDSGGERAAAMYSLIGSCKLNGINPRAYLEYVLTHIADHQANRIDELLPWNVA  517
            +F GS+ GGER+A +YSLIG+CKLN+++P +YL  VL  IAD   NR+ ELLPW +A
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIA  457

319) SDY_P021 in NC_007607


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  306 bits (1148),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 212/369 (58%), Positives = 279/369 (76%), Gaps = 4/369 (1%)

Query  7    EINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETLGEQYDPVLPS  66
            EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     G  YDP +  
Sbjct  36   EIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLTGRVYDPAVQR  91

Query  67   PLRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELISSAFKVIETQ  126
            PLRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+ SAF+VI T 
Sbjct  92   PLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTV  151

Query  127  RPKLACCRCDHIVQAPVPSKPIARSYagagllahvvagKYADYLPLYRQSEIYRRQGVEL  186
            R K AC +CD IVQAP PS+PI R+ AG+GLLA+V+++KYA+  PLY QSEIY RQGVEL
Sbjct  152  REKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVEL  211

Query  187  SRATLGRWTGAVAELLELLYDILRQYVLMPGKVHADDIPVPVQEPGSGKTRTARLWVYVR  246
            SR+ L+ W +A   LL  L + L+ YV+  GK+HADD PV V  PG+ KT+T+RLW YVR
Sbjct  212  SRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVR  271

Query  247  DDRNAGSEMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYESGRITEAACM  306
            +DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY +G ITEAAC 
Sbjct  272  NDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACW  331

Query  307  AHVRRKIHDVHARVPTDITTEALQRIGELYAIEAEVRGCSaeqrlaarkaraaPLMQSLY  366
            AH RRKIHDVH R+P+ +T EAL++IG+LYAIEA++RG +AEQRLA R+ ++ PL++SL 
Sbjct  332  AHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLE  391

Query  367  DWIQQQMKI  375
             W++++MK 
Sbjct  392  SWLREKMKT  400

320) BYI23_E000130 in NC_016591


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  301 bits (1126),  Expect = 8e-83, Method: Compositional matrix adjust.
 Identities = 181/375 (49%), Positives = 264/375 (71%), Gaps = 6/375 (1%)

Query  39   IVERDQEVERLKAQIDKRRRMHFGRKSEQLDRQIDRLETQLEDLSagsgvadvrrarara  98
            + +R++E+++L+AQ+DK RRM+FG +SE++ R+I ++E++L+ L   S+    R   +  
Sbjct  30   LSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAV  89

Query  99   sssgvsaasPKEALAphlpreehelepDSICPKCNNAMELLGEDVSEQLARVTAMFKVIR  158
              +   + + K    +    E + L + + CP+C  ++  LGED +EQL  + + F+VIR
Sbjct  90   QRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIR  149

Query  159  TIRRKRICTGCGHIAQPPMPGLPIERSIAHPSLLAEIIVAEYANHTPLYRQSEIAARDGV  218
            T+R K+ CT C+ I Q+P P+ PIER+IA P+LLA ++ + YA+HTPLY QSEI +R+GV
Sbjct  150  TVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGV  209

Query  219  RLDRATMARWVGQCEELCRLLT---EALRRYTMATAKIHADDTPIPVLAPGNKKTKTGRL  275
             L R+ ++ WV+ C   CRLL+   EAL+ Y M+ +K+HADDTP+ VL PGNKKTKTGRL
Sbjct  210  ELSRSLLSGWVDAC---CRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRL  266

Query  276  WVYVRDNRRSGSNEPASVWFAYSPDRKGIHPQTHLAGFKGILQADGYAGFNELNEGGKVR  335
            W YVR++R +GS  +++VWFAYSPDRK+IHPQTHLA F G+LQAD+YAGFNEL   G + 
Sbjct  267  WAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGIT  326

Query  336  LAFCWDHARRYVFNAHETAPSDTTKQWLDMIGEFYGIEADIRGKTPDERRRVRQEKSAPL  395
             A CW HARR + + H   PS  T + L+ IG++Y+IEADIRG  +++R   RQ K+ PL
Sbjct  327  EAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPL  386

Query  396  LVALETSMREKLATL  410
            L +LE+ +REK+ TL
Sbjct  387  LKSLESWLREKMKTL  401


 Score = 66.0 bits (231),  Expect = 4e-12, Method: Compositional matrix adjust.
 Identities = 34/57 (60%), Positives = 44/57 (78%), Gaps = 0/57 (0%)

Query  461  MFAGSDSGGERAAAMYSLIGSCKLNGVNPRAYLEYVLTHIADHQANRIDELLPWNVA  517
            +F GS+ GGER+A +YSLIG+CKLN+V+P +YL  VL  IAD   NR+ ELLPW +A
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIA  457

321) Bcep1808_6199 in NC_009254


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  296 bits (1109),  Expect = 2e-81, Method: Compositional matrix adjust.
 Identities = 177/407 (44%), Positives = 274/407 (68%), Gaps = 16/407 (3%)

Query  10   IAALKRIVASRDETIAQLLAEISRLKRWQYGRSSERMTELMDQLQLALGELPVPESTMaa  69
            I AL+  +++R+  I +L A++ +L+R ++G  SE+++  + Q++  L  L     T+++
Sbjct  23   IHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTLTG  82

Query  70   takvpdadaaadSLATTNVVPLR--RKSRHFPAHLPRETVVHAPSNCGCPECGKQMRALG  127
                            +   PLR  R  + FP  LPR+     P+   CP+CG  +  LG
Sbjct  83   RV-----------YDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLG  131

Query  128  EDVSEVLDYVPGYFKVLRHVRPKLSCPRCAAVVQEPAPSRPIARSMagagllaqvvvaKY  187
            ED +E L+ + + F+V+R VR K +C +C ++VQ PAPSRPI R++AG+GLLA+V+ +KY
Sbjct  132  EDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKY  191

Query  188  ADHMPLYRQAGIYRRAGIELDRATLASWVREAAALLQPLSDALGGYVRAADKIHTDDTPV  247
            A+H PLY Q+ IY R G+EL R+ L++WV     LL PL +AL GYV + +K+H+DDTPV
Sbjct  192  AEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPV  251

Query  248  PVLEPGRGRTRTARLWAYVRDDRPAGSRAPPAVWYRYSPDRKGERPREHLAGYTGILQAD  307
             VL PG  +T+T+RLWAYVR+DR AGS  +PAVW+ YSPDRK+ +P+ HLA ++G+LQAD
Sbjct  252  QVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQAD  311

Query  308  AFSGYDALYRDGTVIEAGCWAHARRKFYDLYKLDSSPIAEEALRRIGALYVVERDVRGQT  367
            A++G++ LYR+G + EA+CWAHARRK+ D+    +S+++EEAL +IG LY +E D+RG  
Sbjct  312  AYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMP  371

Query  368  PNVRLSARQQRSAPLLNELKAWFEHTLSQV---SAKSGLAKAIRYSL  411
            ++ RL+ RQ+++ PLL+ L +W+ + +  +   S+ +G   A+ YSL
Sbjct  372  AEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score = 61.6 bits (214),  Expect = 9e-11, Method: Compositional matrix adjust.
 Identities = 34/66 (52%), Positives = 52/66 (79%), Gaps = 1/66 (1%)

Query  443  GRRNYLFAGSDGGGQSAAVIYSLIGTARLNDIEPFAYLHTVFERIADHPINRIDELLPWH  502
             + + LF GS+ GG+ +A++YSLIGT +LND++P +YL+ V+  IAD P+NR+ ELLPW+
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  503  L-MPAE  507
            + +PAE
Sbjct  456  IALPAE  461

322) Bcep1808_4303 in NC_009255


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  296 bits (1109),  Expect = 2e-81, Method: Compositional matrix adjust.
 Identities = 177/407 (44%), Positives = 274/407 (68%), Gaps = 16/407 (3%)

Query  10   IAALKRIVASRDETIAQLLAEISRLKRWQYGRSSERMTELMDQLQLALGELPVPESTMaa  69
            I AL+  +++R+  I +L A++ +L+R ++G  SE+++  + Q++  L  L     T+++
Sbjct  23   IHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTLTG  82

Query  70   takvpdadaaadSLATTNVVPLR--RKSRHFPAHLPRETVVHAPSNCGCPECGKQMRALG  127
                            +   PLR  R  + FP  LPR+     P+   CP+CG  +  LG
Sbjct  83   RV-----------YDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLG  131

Query  128  EDVSEVLDYVPGYFKVLRHVRPKLSCPRCAAVVQEPAPSRPIARSMagagllaqvvvaKY  187
            ED +E L+ + + F+V+R VR K +C +C ++VQ PAPSRPI R++AG+GLLA+V+ +KY
Sbjct  132  EDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKY  191

Query  188  ADHMPLYRQAGIYRRAGIELDRATLASWVREAAALLQPLSDALGGYVRAADKIHTDDTPV  247
            A+H PLY Q+ IY R G+EL R+ L++WV     LL PL +AL GYV + +K+H+DDTPV
Sbjct  192  AEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPV  251

Query  248  PVLEPGRGRTRTARLWAYVRDDRPAGSRAPPAVWYRYSPDRKGERPREHLAGYTGILQAD  307
             VL PG  +T+T+RLWAYVR+DR AGS  +PAVW+ YSPDRK+ +P+ HLA ++G+LQAD
Sbjct  252  QVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQAD  311

Query  308  AFSGYDALYRDGTVIEAGCWAHARRKFYDLYKLDSSPIAEEALRRIGALYVVERDVRGQT  367
            A++G++ LYR+G + EA+CWAHARRK+ D+    +S+++EEAL +IG LY +E D+RG  
Sbjct  312  AYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMP  371

Query  368  PNVRLSARQQRSAPLLNELKAWFEHTLSQV---SAKSGLAKAIRYSL  411
            ++ RL+ RQ+++ PLL+ L +W+ + +  +   S+ +G   A+ YSL
Sbjct  372  AEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score = 61.6 bits (214),  Expect = 9e-11, Method: Compositional matrix adjust.
 Identities = 34/66 (52%), Positives = 52/66 (79%), Gaps = 1/66 (1%)

Query  443  GRRNYLFAGSDGGGQSAAVIYSLIGTARLNDIEPFAYLHTVFERIADHPINRIDELLPWH  502
             + + LF GS+ GG+ +A++YSLIGT +LND++P +YL+ V+  IAD P+NR+ ELLPW+
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  503  L-MPAE  507
            + +PAE
Sbjct  456  IALPAE  461

323) Bcep1808_2632 in NC_009256


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  296 bits (1109),  Expect = 2e-81, Method: Compositional matrix adjust.
 Identities = 177/407 (44%), Positives = 274/407 (68%), Gaps = 16/407 (3%)

Query  10   IAALKRIVASRDETIAQLLAEISRLKRWQYGRSSERMTELMDQLQLALGELPVPESTMaa  69
            I AL+  +++R+  I +L A++ +L+R ++G  SE+++  + Q++  L  L     T+++
Sbjct  23   IHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTLTG  82

Query  70   takvpdadaaadSLATTNVVPLR--RKSRHFPAHLPRETVVHAPSNCGCPECGKQMRALG  127
                            +   PLR  R  + FP  LPR+     P+   CP+CG  +  LG
Sbjct  83   RV-----------YDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLG  131

Query  128  EDVSEVLDYVPGYFKVLRHVRPKLSCPRCAAVVQEPAPSRPIARSMagagllaqvvvaKY  187
            ED +E L+ + + F+V+R VR K +C +C ++VQ PAPSRPI R++AG+GLLA+V+ +KY
Sbjct  132  EDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKY  191

Query  188  ADHMPLYRQAGIYRRAGIELDRATLASWVREAAALLQPLSDALGGYVRAADKIHTDDTPV  247
            A+H PLY Q+ IY R G+EL R+ L++WV     LL PL +AL GYV + +K+H+DDTPV
Sbjct  192  AEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPV  251

Query  248  PVLEPGRGRTRTARLWAYVRDDRPAGSRAPPAVWYRYSPDRKGERPREHLAGYTGILQAD  307
             VL PG  +T+T+RLWAYVR+DR AGS  +PAVW+ YSPDRK+ +P+ HLA ++G+LQAD
Sbjct  252  QVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQAD  311

Query  308  AFSGYDALYRDGTVIEAGCWAHARRKFYDLYKLDSSPIAEEALRRIGALYVVERDVRGQT  367
            A++G++ LYR+G + EA+CWAHARRK+ D+    +S+++EEAL +IG LY +E D+RG  
Sbjct  312  AYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMP  371

Query  368  PNVRLSARQQRSAPLLNELKAWFEHTLSQV---SAKSGLAKAIRYSL  411
            ++ RL+ RQ+++ PLL+ L +W+ + +  +   S+ +G   A+ YSL
Sbjct  372  AEQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSL  418


 Score = 61.6 bits (214),  Expect = 9e-11, Method: Compositional matrix adjust.
 Identities = 34/66 (52%), Positives = 52/66 (79%), Gaps = 1/66 (1%)

Query  443  GRRNYLFAGSDGGGQSAAVIYSLIGTARLNDIEPFAYLHTVFERIADHPINRIDELLPWH  502
             + + LF GS+ GG+ +A++YSLIGT +LND++P +YL+ V+  IAD P+NR+ ELLPW+
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  503  L-MPAE  507
            + +PAE
Sbjct  456  IALPAE  461

324) ECP_3840 in NC_008253


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  295 bits (1105),  Expect = 3e-81, Method: Compositional matrix adjust.
 Identities = 196/325 (61%), Positives = 254/325 (79%), Gaps = 2/325 (0%)

Query  54   GDALTNII--PVLPSALRQSSARKPLPASLPRETRVIRPeeecclacggelSSLGCDVSE  111
            +D+LT  +  P +  +LRQ+ +RKP+P SLPR+ + + P   CC  CGG LS LG D +E
Sbjct  77   SDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAE  136

Query  112  QLELISSAFKVIETQRPKLACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVTGKYADHLP  171
            QLEL+ SAF+VI T R K AC +CD IVQAP PS+PI R+ AG+GLLA+V+T+KYA+H P
Sbjct  137  QLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTP  196

Query  172  LYRQSEIYRRQGVELSRATLGRWTGAAAELLEPLYDVLRQYVLMPGKVHADDIPVPVQEP  231
            LY QSEIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  P
Sbjct  197  LYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLP  256

Query  232  GSGKTRTARLWAYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADTYGCY  291
            G+ KT+T+RLWAYVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQAD+Y+ +
Sbjct  257  GNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGF  316

Query  292  RVLYESGRITEAACMAHARRKIHDVHARVSTDITTEALQRIGELYAIEAEVRGCTaeqrl  351
              LY +G ITEAAC AHARRKIHDVH R+++ +T EAL++IG+LYAIEA++RG  AEQRL
Sbjct  317  NELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRL  376

Query  352  aarkaraaPLMQSLYDWIQTQMKTL  376
            A R+ ++ PL++SL  W++ +MKTL
Sbjct  377  AERQRKTKPLLKSLESWLREKMKTL  401

325) PT7_2220 in NC_015458


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  295 bits (1104),  Expect = 3e-81, Method: Compositional matrix adjust.
 Identities = 170/358 (48%), Positives = 263/358 (74%), Gaps = 1/358 (0%)

Query  2    LDKLRRALFGQKSEKLAGQIDqlqleleelHINQGERAQSI-EsaqapasrpapqrrpLP  60
            LDKLRR  FG +SEK++ +I Q++ +L+ L+ + +  +  + ++A   + R +  R+P+P
Sbjct  44   LDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPFP  103

Query  61   EHLPCEVHEHLPKESACPDCGGAWTRLGEDVSNVLEHVPASFRIVRHVRPRLACSCCERM  120
            E LP +    LP  + CP+CGG+ + LGED ++ LE + ++FR++R VR + AC+ C+ +
Sbjct  104  ESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTI  163

Query  121  AQAPAPSRPIARSFAGPGLLSHVMVSKYLDHQPLYRQCQIYERENVSLSESTVGDWVGGV  180
             QAPAPSRPI R++AGPGLL++V+ SKY +H PLY Q +IY R+ V LS S +++WV++ 
Sbjct  164  VQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDAC  223

Query  181  HQLLRPLLEALRRHVFSADKLHTDDTPINVLAPGTGKTRQARLWVYARDDRPSGDTTAPA  240
             +LL PL EAL+  V + +KLH+DDTP++VL PG  KT+ +RLW Y R+DR +G + APA
Sbjct  224  CRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPA  283

Query  241  MWIRYSPDRRGIHPQTHLKDYIGILQADAFAGYDKIYESGRVLEAGCWAHARRKFYDIHV  300
            +W+ YSPDR++IHPQTHL  + G+LQADA+AG++ +Y +G + EA+CWAHARRK+ D+HV
Sbjct  284  VWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHV  343

Query  301  KSATPITTHVLDRIAALYKIESSIRGSPADVRRRVRQEHAKPLAIALHAWLREQLTTI  358
            + ++++T + L++I+ LY IE+ IRG PA+ R   RQ  +KPL  +L++WLRE++ T+
Sbjct  344  RIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score = 78.4 bits (278),  Expect = 7e-16, Method: Compositional matrix adjust.
 Identities = 41/63 (66%), Positives = 54/63 (86%), Gaps = 0/63 (0%)

Query  404  GRKNYLFLGSDAGGERAATMYSLLGTAKLNDINPQAYLRHVLSVIADHPVNRVDELLPWN  463
             + + LF+GS+ GGER+A +YSL+GT KLND++P++YLRHVL+VIAD PVNRV ELLPW 
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  464  VAL  466
            +AL
Sbjct  456  IAL  458

326) Tmz1t_0278 in NC_011662


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  289 bits (1081),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 202/379 (54%), Positives = 268/379 (71%), Gaps = 2/379 (0%)

Query  12   VIALRAKVSEQAAEIEHLKLVIAKLRRMQFGRSSEQMNemlgqlelsleeletlraetpa  71
            + AL+ K+S++  EI+HL+  + KLRRM+FG  SE+++  ++Q+E  L+ L+       +
Sbjct  23   IHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTLTG  82

Query  72   epttpadtreappprkplpdhlprdIEEH--LPSACDCPACGASLKKLGETVSEMLEYVP  129
                PA  R     R   P   +   +E   LP+A  CP CG+SL  LGE  +E LE + 
Sbjct  83   RVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMR  142

Query  130  ASFRVIRHVRPKFACSRCDTIVQANaparpiarglagagllaHVLVAKYCDHLPLYRQST  189
            ++FRVIR VR K AC++CDTIVQA AP+RPI RG+AG+GLLA+VL +KY +H PLY QS 
Sbjct  143  SAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSE  202

Query  190  IYAREGVELERSTLADWVGQCNALLRPLVEALRKHVLSATKLHADDTPVPVLSPGEGQTR  249
            IY+R+GVEL RS L++WV+ C  LL PL EAL+  V++  KLHADDTPV VL PG+ +T+
Sbjct  203  IYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTK  262

Query  250  TGRLWTYVRDDRPAGDATPPAVWFAYSPNRRGEHPQRHLAHFKGVLQADAFAGFAPLYLG  309
            TGRLW+YVR+DR AG A +PAVWFAYSP+R++ HPQ HLA F GVLQADA+AGF  LY  
Sbjct  263  TGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYRN  322

Query  310  GAIQEAACWAHVRRKFFDLHKAQASPLAAEALKQIGLLYAVEEAIRGKPPELRRAERQAR  369
            G+I EAACWAH RRK+ D+H   +S+L+ EAL QIG LYA+E  IRG P+E R AERQ +
Sbjct  323  GGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRK  382

Query  370  AGPVLVALRAWLDATLKQL  388
            + P+L +L +WL   +K L
Sbjct  383  TKPLLKSLESWLREKMKTL  401


 Score = 71.5 bits (252),  Expect = 9e-14, Method: Compositional matrix adjust.
 Identities = 38/61 (63%), Positives = 51/61 (84%), Gaps = 0/61 (0%)

Query  434  GRKNFLFAGSDAGGERAAAIYGLIGTAKLNGLDPEAYLRHVIGRIAEHPVNRVAELLPWN  493
             + + LF GS+ GGER+A +Y+LIGT KLN++DPE+YLRHV+G IA+ PVNRV+ELLPW 
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  494  V  494
            +
Sbjct  456  I  456

327) RHE_CH00239 in NC_007761


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  273 bits (1023),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 164/402 (41%), Positives = 268/402 (67%), Gaps = 9/402 (2%)

Query  8    SQDELNTLRALVAEQAAKLESQEAEVIKRDSIIGLLRAQLELLRHRQHGASSEKIDRKIE  67
            S D++  L+  +AEQ A +++ +  + +R+  I+ L+AQL+ LR+ + G+ SEK+ R+I 
Sbjct  5    SSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIA  64

Query  68   QFELMLEEIEASRAEAEQRSGKPPLPELDDASEKPKRKPLPDDLTTEE--LVYAAPCNCP  125
            Q E  L+ ++        R   P++       +   RKP+P+ L  +E  L+ AAPC CP
Sbjct  65   QMEADLNRLQKESDTLTGRVYDPAVQR--PLRQTRTRKPFPESLPRDEKRLLPAAPC-CP  121

Query  126  TCGGT-SFLKAADRVVQVLEHVPASVKIVRHVEKRMICRECDTTVAGEMPTLPIERGKPG  184
             CGG+ S+L  ++   + LE + ++ +++R V  +  C +CDT V +  P+ PIERG +G
Sbjct  122  NCGGSLSYL--GEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAG  179

Query  185  PGLLAHIMIAKFDDHIPLYRLSEMYDRLGIDISRSVMADWVGRVSALLTPLVLLIRAHIA  244
            PGLLA+++ +K+ +H PLY  SE+Y+R G+++SRS++++WV+    LL+PL   +++ + 
Sbjct  180  PGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVM  239

Query  245  ALDRIHTDDTPVDVLDPGRGKTKTGRVWVYIFDGSGYQSATPAAIAYYYSPDRRGAHPAD  304
            + +++H+DDTPV+VL PG  KTKTGR+W Y+ ++    SA ++A+ + YSPDR++ HP  
Sbjct  240  TDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQT  299

Query  305  HLASFSGVMHADGYGGYKKLY-GNQIIEAACMAHVRRKFHDVIKLKPSPIAEEALSRIGA  363
            HLA FSGV++AD+Y+G++ LY    I EAAC AH RRK+HDV    PS+++EEAL +IG 
Sbjct  300  HLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQ  359

Query  364  LYDIENRIRGMSADERRTLRQHHARPVLDELKAWIEATLSTL  405
            LY IE  IRGM+A++R + RQ+ ++P+L  L +W+   + TL
Sbjct  360  LYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401

328) RHE_PA00084 in NC_007762


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  273 bits (1023),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 164/402 (41%), Positives = 268/402 (67%), Gaps = 9/402 (2%)

Query  8    SQDELNTLRALVAEQAAKLESQEAEVIKRDSIIGLLRAQLELLRHRQHGASSEKIDRKIE  67
            S D++  L+  +AEQ A +++ +  + +R+  I+ L+AQL+ LR+ + G+ SEK+ R+I 
Sbjct  5    SSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIA  64

Query  68   QFELMLEEIEASRAEAEQRSGKPPLPELDDASEKPKRKPLPDDLTTEE--LVYAAPCNCP  125
            Q E  L+ ++        R   P++       +   RKP+P+ L  +E  L+ AAPC CP
Sbjct  65   QMEADLNRLQKESDTLTGRVYDPAVQR--PLRQTRTRKPFPESLPRDEKRLLPAAPC-CP  121

Query  126  TCGGT-SFLKAADRVVQVLEHVPASVKIVRHVEKRMICRECDTTVAGEMPTLPIERGKPG  184
             CGG+ S+L  ++   + LE + ++ +++R V  +  C +CDT V +  P+ PIERG +G
Sbjct  122  NCGGSLSYL--GEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAG  179

Query  185  PGLLAHIMIAKFDDHIPLYRLSEMYDRLGIDISRSVMADWVGRVSALLTPLVLLIRAHIA  244
            PGLLA+++ +K+ +H PLY  SE+Y+R G+++SRS++++WV+    LL+PL   +++ + 
Sbjct  180  PGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVM  239

Query  245  ALDRIHTDDTPVDVLDPGRGKTKTGRVWVYIFDGSGYQSATPAAIAYYYSPDRRGAHPAD  304
            + +++H+DDTPV+VL PG  KTKTGR+W Y+ ++    SA ++A+ + YSPDR++ HP  
Sbjct  240  TDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQT  299

Query  305  HLASFSGVMHADGYGGYKKLY-GNQIIEAACMAHVRRKFHDVIKLKPSPIAEEALSRIGA  363
            HLA FSGV++AD+Y+G++ LY    I EAAC AH RRK+HDV    PS+++EEAL +IG 
Sbjct  300  HLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQ  359

Query  364  LYDIENRIRGMSADERRTLRQHHARPVLDELKAWIEATLSTL  405
            LY IE  IRGM+A++R + RQ+ ++P+L  L +W+   + TL
Sbjct  360  LYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401

329) RHE_PA00098 in NC_007762


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  273 bits (1023),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 164/402 (41%), Positives = 268/402 (67%), Gaps = 9/402 (2%)

Query  8    SQDELNTLRALVAEQAAKLESQEAEVIKRDSIIGLLRAQLELLRHRQHGASSEKIDRKIE  67
            S D++  L+  +AEQ A +++ +  + +R+  I+ L+AQL+ LR+ + G+ SEK+ R+I 
Sbjct  5    SSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIA  64

Query  68   QFELMLEEIEASRAEAEQRSGKPPLPELDDASEKPKRKPLPDDLTTEE--LVYAAPCNCP  125
            Q E  L+ ++        R   P++       +   RKP+P+ L  +E  L+ AAPC CP
Sbjct  65   QMEADLNRLQKESDTLTGRVYDPAVQR--PLRQTRTRKPFPESLPRDEKRLLPAAPC-CP  121

Query  126  TCGGT-SFLKAADRVVQVLEHVPASVKIVRHVEKRMICRECDTTVAGEMPTLPIERGKPG  184
             CGG+ S+L  ++   + LE + ++ +++R V  +  C +CDT V +  P+ PIERG +G
Sbjct  122  NCGGSLSYL--GEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAG  179

Query  185  PGLLAHIMIAKFDDHIPLYRLSEMYDRLGIDISRSVMADWVGRVSALLTPLVLLIRAHIA  244
            PGLLA+++ +K+ +H PLY  SE+Y+R G+++SRS++++WV+    LL+PL   +++ + 
Sbjct  180  PGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVM  239

Query  245  ALDRIHTDDTPVDVLDPGRGKTKTGRVWVYIFDGSGYQSATPAAIAYYYSPDRRGAHPAD  304
            + +++H+DDTPV+VL PG  KTKTGR+W Y+ ++    SA ++A+ + YSPDR++ HP  
Sbjct  240  TDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQT  299

Query  305  HLASFSGVMHADGYGGYKKLY-GNQIIEAACMAHVRRKFHDVIKLKPSPIAEEALSRIGA  363
            HLA FSGV++AD+Y+G++ LY    I EAAC AH RRK+HDV    PS+++EEAL +IG 
Sbjct  300  HLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQ  359

Query  364  LYDIENRIRGMSADERRTLRQHHARPVLDELKAWIEATLSTL  405
            LY IE  IRGM+A++R + RQ+ ++P+L  L +W+   + TL
Sbjct  360  LYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401

330) RHE_CH02014 in NC_007761


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  271 bits (1014),  Expect = 6e-74, Method: Compositional matrix adjust.
 Identities = 164/402 (41%), Positives = 267/402 (67%), Gaps = 9/402 (2%)

Query  8    SQDELNTLRALVAEQAAKLESQEAEVIKRDSIIGLLRAQLELLRHRQHGASSEKIDRKIE  67
            S D++  L+  +AEQ A +++ +  + +R+  I+ L+AQL+ LR+ + G+ SEK+ R+I 
Sbjct  5    SSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIA  64

Query  68   QFELMLEEIEASRAEAEQRSGKPPLPELDDASEKPKRKPLPDDLTTEE--LVYAAPCNCP  125
            Q E  L+ ++        R   P++       +   RKP+P+ L  +E  L+ AAPC CP
Sbjct  65   QMEADLNRLQKESDTLTGRVYDPAVQR--PLRQTRTRKPFPESLPRDEKRLLPAAPC-CP  121

Query  126  TCGGT-SFLKAADRVVQVLEHVPASVKIVRHVEKRMICRECDTTVAGEMPTLPIERGKPG  184
             CGG+ S+L  ++   + LE + ++ +++R V  +  C +CDT V +  P+ PIERG +G
Sbjct  122  NCGGSLSYL--GEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAG  179

Query  185  PGLLAHIMIAKFDDHIPLYRLSEMYDRLGIDISRSVMADWVGRVSALLTPLVLLIRAHIA  244
            PGLLA+++ +K+ +H PLY  SE+Y+R G+++SRS++++WV+    LL+PL   +++ + 
Sbjct  180  PGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVM  239

Query  245  ALDLIHTDDTPVDVLDPGRGKTKTGRVWVYIFDGSGYQSATPAAIAYYYSPDRRGAHPAD  304
            + + +H+DDTPV+VL PG  KTKTGR+W Y+ ++    SA ++A+ + YSPDR++ HP  
Sbjct  240  TDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQT  299

Query  305  HLASFSGVMHADGYGGYKKLY-GNQIIEAACMAHVRRKFHDVIKLKPSPIAEEALSRIGA  363
            HLA FSGV++AD+Y+G++ LY    I EAAC AH RRK+HDV    PS+++EEAL +IG 
Sbjct  300  HLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQ  359

Query  364  LYDIENRIRGMSADERRTLRQHHARPVLDELKAWIEATLSTL  405
            LY IE  IRGM+A++R + RQ+ ++P+L  L +W+   + TL
Sbjct  360  LYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401

331) amb3320 in NC_007626


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  270 bits (1011),  Expect = 1e-73, Method: Compositional matrix adjust.
 Identities = 165/378 (44%), Positives = 256/378 (68%), Gaps = 7/378 (1%)

Query  48   LMSKTLEVEKLRIELARLRRMQFGRSSEKISRAADQlelmleevessaaaalapaedgas  107
            L ++  E++ L+ +L +LRRM+FG  SEK+SR   Q+E  L+ ++  + +  +   D A 
Sbjct  30   LSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAV  89

Query  108  DGPAPKrnrarr-plpphlprTEVVHDSACTCPSCGGAMRKVGEDVTEILDYVPGRFQVI  166
            + P  +    +  P +       ++  ++C CP+CGG++  +GED +E L+ + + F+VI
Sbjct  90   QRPLRQTRTRKPFPESLPRDEKRLLPAAPC-CPNCGGSLSYLGEDTAEQLELMRSAFRVI  148

Query  167  RHIRPAYSCRACEGMVQAPMPSMPIERGLPSAALLAHVLVSKYCDHLPLYRQSGIYARDG  226
            R +R   +C  C+ +VQAP PS PIERG+++++LLA+VL SKY +H PLY QS IY+R+G
Sbjct  149  RTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQG  208

Query  227  VDLDRGLLAEWVGKAATLVRPLVDAAEAHAMAGGQIHGDDTPVPVLAPGIGKTKTGRLWA  286
            V+L R+LL+ WV+    L+ PL +A ++  M++G++H+DDTPV VL PG  KTKTGRLWA
Sbjct  209  VELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWA  268

Query  287  YLRDERPWDGPAPPAVAYRYSPDRKGERPQKHLAGFRGHLHADGYAGFGELYLAKEGKPP  346
            Y+R++R  +++ +PAV + YSPDRK+ +PQ HLA F G L+AD+YAGF ELY     +  
Sbjct  269  YVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELY-----RNG  323

Query  347  PVTEVACWAHVRRKFHDVHVATTAPIAAEALERIGRLFAVERAIVGIPPDQRRAIRQVEA  406
             +TE ACWAH RRK+HDVHV   ++++ EALE+IG+L+A+E  I G+P++QR A RQ  +
Sbjct  324  GITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKT  383

Query  407  CPIMGDLAGYLDASLTRI  424
             P++  L + L   +  +
Sbjct  384  KPLLKSLESWLREKMKTL  401


 Score = 53.4 bits (183),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 39/78 (50%), Positives = 55/78 (71%), Gaps = 7/78 (8%)

Query  461  ERAMRPLALGRKNWL-------FagsdaggdraaaIYTLTETAKLNGLDPEAYLRDVLTR  513
            +R  +PL  +  +WL       F GS+ GG+R+A +Y+L  T KLN++DPE+YLR+VL  
Sbjct  380  QRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGV  439

Query  514  IADHPVNRIADLLPWNIA  531
            IAD PVNR+++LLPW IA
Sbjct  440  IADWPVNRVSELLPWRIA  457

332) DelCs14_1738 in NC_015563


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  268 bits (1002),  Expect = 5e-73, Method: Compositional matrix adjust.
 Identities = 168/413 (41%), Positives = 267/413 (65%), Gaps = 23/413 (5%)

Query  1    MTSQELLALNAVLSGE---VQRSQEALKIALLTVEKLKVELAYLRRMKYGRSSEQLAHAQ  57
            ++S++++ L+  L+ +   ++  QE L      ++ L+ +L  LRRM++G  SE++++  
Sbjct  4    ISSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRI  63

Query  58   LELVGGQVAQPAATSAEPASGGDCGTQGNVTPIEqgrrkrqargqasarDLPEHLPR--R  115
             ++ ++       + +  +   D + Q  +                + + +PE LPR  +
Sbjct  64   AQMEADLNRLQKESDTLTGRVYDPAVQRPLRQT------------RTRKPFPESLPRDEK  111

Query  116  TVLHAPqggcdcqacgqgLRQIGQDVSEVLDYEPGRFHVVRHVRPRLACKRCSTITQAPT  175
             +L A+    +C +    L  +G+D +E L+   + F+V+R VR + AC +C TI QAP+
Sbjct  112  RLLPAAPCCPNCGGS---LSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPA  168

Query  176  PSRPIDRCLAGTGLLTHVLVSKYCDHTPLYRLCQIYGREGVPLQRSTLADWVAQAARLLS  235
            PSRPI+R +AG GLL++VL SKY +HTPLY   +IYGR+GV L RS L++WV    RLLS
Sbjct  169  PSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLS  228

Query  236  PLAQAIGRYVLAAEKIHGDDTPIRVLGGAGAKARTGRLWVYVRDDRASGDAAPPAVWFQY  295
            PL +A+  YV++  K+H+DDTP++VL  +  K++TGRLW YVR+DR +G A +PAVWF Y
Sbjct  229  PLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAY  288

Query  296  SADRKGEHPVRHLKDFSGILQADAFAGYHPLYESGKVVEAACWSHARRKMWDIHERQHKL  355
            S+DRK+ HP  HL  FSG+LQADA+AG++ LY +G + EAACW+HARRK+ D+H R   +
Sbjct  289  SPDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVR---I  345

Query  356  AGTLAHQALQRIGVLFQIEAQIRGRTAPERWRARQERTRPALQELRTWLNATL  408
            +++L+++AL++IG L+ IEA+IRG  A +R   RQ +T+P L+ L +WL   +
Sbjct  346  PSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKM  398

333) SbBS512_A0036 in NC_010660


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  263 bits (984),  Expect = 9e-72, Method: Compositional matrix adjust.
 Identities = 197/379 (52%), Positives = 264/379 (70%), Gaps = 29/379 (7%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQILEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSPLRQSSARKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVSEQLELI  152
            G  YDP +  PLRQ+ +RKP+P SLPR+ + + P   CCP CGG LS LG D +EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKLACCRCDHIVQAPVPSKPIARSYagagllahvvagKYADYLPLYRQS  212
             SAF+VI T R K AC +CD IVQAP PS+PI R+ AG+GLLA+V+++KYA+  PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDILRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSEMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+G+  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRIT-------------------------EALLRIGELYAIEAEVRGCSaeqrlaarka  367
            +G IT                         EAL +IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  368  raaPLMQSLYDWIQQQMKI  386
            ++ PL++SL  W++++MK 
Sbjct  382  KTKPLLKSLESWLREKMKT  400

334) BUPH_08144 in NC_018695


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  262 bits (979),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 168/329 (52%), Positives = 219/329 (67%), Gaps = 51/329 (15%)

Query  65   PGLLAHVLVSKFADHVPLYRQSVMYAREGVELDRSLLAKWVGHAATLLQPLVETLRRHVM  124
            PGLLA+VL SK+A+H PLY QS +Y+R+GVEL RSLL+ WV+    LL PL E+L+  VM
Sbjct  180  PGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVM  239

Query  125  LATKLHADDTPVPVLAPGNGKTKTGRLWVYVRDDRASADMTPPAVWFAYTPDRKSIHPQQ  184
               KLHADDTPV VL PGN KTKTGRLW YVR+DR ++   +PAVWFAY+PDRKSIHPQ 
Sbjct  240  TDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQT  299

Query  185  HLGSFNGTLQADAYGGYQAIYETGRVTEAACWAHARRQFYELHAARPNALNTEALERIGA  244
            HL+ F+G LQADAY+G++ +Y  G +TEAACWAHARR++ ++H   P+AL  EALE+IG 
Sbjct  300  HLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQ  359

Query  245  LYRIEETIRGKPPDQRSAHRQAHARPLLDQFHAWLTTTLETLSRKSDTSRAILYALNRWE  304
            LY IE  IRG P++QR A+RQ                      RK+   +++L +L+ W 
Sbjct  360  LYAIEADIRGMPAEQRLAERQ----------------------RKT---KPLLKSLESW-  393

Query  305  ALTRYCGDGQLEIDNLPVERALRGVAIGRRNYLFAGADSGGERAAAIYSLIGTAKLNGID  364
                                 LR     + + LF G++ GGER+A +YSLIGT KLN++D
Sbjct  394  ---------------------LRE----KMKTLFFGSGHGGERGALLYSLIGTCKLNDVD  428

Query  365  PEAYLRYVLARIADHAINRIDELAPWVVA  393
            PE+YLR VL+ IAD ++NR+ EL PW +A
Sbjct  429  PESYLRHVLGVIADWPVNRVSELLPWRIA  457

335) SSON_P019 in NC_007385


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  260 bits (973),  Expect = 7e-71, Method: Compositional matrix adjust.
 Identities = 194/379 (52%), Positives = 263/379 (70%), Gaps = 29/379 (7%)

Query  33   LSQRVAAYASEINRLKALVAKLQRMQFGKSSEKLRAKTERQIQEAQERISALQEEMAETL  92
            L ++++    EI++L+A + KL+RM+FG  SEK+     R+I + +  ++ LQ E     
Sbjct  26   LQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKV----SRRIAQMEADLNRLQKESDTLT  81

Query  93   GEQYDPVLPSPLRQSSAHKPLPASLPRETRVIRpeeeccpacggeLSSLGCDVLEQLELI  152
            G  YDP +  PLRQ+ ++KP+P SLPR+ + + P   CCP CGG LS LG D  EQLEL+
Sbjct  82   GRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELM  141

Query  153  SSAFKVIETQRPKLACCRCDHIVQAPVPSKPIARSYagagllahvvagKYADYLPLYRQS  212
             SAF+VI T R K AC +CD IVQAP PS+PI R+ AG+GLLA+V+++KYA+  PLY QS
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  213  EIYRRQGVELSRATLGRWTGAVAELLEPLYDILRQYVLMPGKVHADDIPVPVQEPGSGKT  272
            EIY RQGVELSR+ L+ W +A   LL PL + L+ YV+  GK+HADD PV V  PG+ KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  273  RTARLWVYVRDDRNAGSEMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGSYRALYE  332
            +T+RLW YVR+DRNAGS ++PAVWFAYSPDRK+IHPQ HLA +SGVLQADAY+++  LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  333  SGRITEAQ-------------------------QRIGELYAIEAEVRGCSaeqrlaarka  367
            +G ITEA                          ++IG+LYAIEA++RG +AEQRLA R+ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  368  raaPLMQSLYDWIQQQMKI  386
            ++ PL++SL  W++++MK 
Sbjct  382  KTKPLLKSLESWLREKMKT  400

336) APA42C_01780 in NC_017150


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 263/401 (66%), Gaps = 21/401 (5%)

Query  14   ILREMIVSLQTEVARLSASARAYEALVQSLKIRIARLQKQKFGASSEKIDREIEQLELLL  73
            +L++ +   ++ +  L       E  ++ L+ ++ +L++ +FG+ SEK+ R I Q+E  L
Sbjct  11   LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADL  70

Query  74   EDVKiaiaaaDPSPDIREHDDSDGVVSSPRRRGKPK--VSDTTPR-ERIVLDPGEACPAC  130
            + +       +  +D       D  V  P R+ + +   +++ PR E+ +L ++  CP C
Sbjct  71   NRL-------QKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  131  GGPLRLVGEDVTEILDFIAAKLKVVETARLKKSCRHCETMVQPEAPSRPVPRGMAGPGLL  190
            GG+L  +GED +E L+++ + ++V+ T R K +C +C+T+VQ+ APSRP+ RG+AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  191  AHILVSKFDDHIPLYRQNEIFSRQGVDIPRSTLIDWCGQAVAVLRPLTDLIRQDVVKADL  250
            A++L SK+ +H PLY Q+EI++RQGV+++RS L +W +    +L PL + ++  V+  + 
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  251  LHADDTPIQVLDPRLRQAGKPRGVKEGRIWTYLRDPRPWGGSDPPAVAYWFSPDRKGINP  310
            LHADDTP+QVL P        +  K GR+W+Y+R+ R  G++ +PAV + +SPDRK+I+P
Sbjct  244  LHADDTPVQVLLP------GNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHP  297

Query  311  QTHLAQFRGILQADAYAGFRDLYKPDATGTVHVREAACWAHLRRAFHDVWKGSDSTIARE  370
            QTHLA F G+LQADAYAGF +LY+ ++     + EAACWAH RR +HDV     S+++ E
Sbjct  298  QTHLACFSGVLQADAYAGFNELYRNGG-----ITEAACWAHARRKIHDVHVRIPSALTEE  352

Query  371  ALEQIGELYDIERQLTGSPAPYRLAVRQEKSRPRVTAFHAW  411
            ALEQIG+LY IE ++ G PA  RLA RQ K++P + ++++W
Sbjct  353  ALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESW  393


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  466  RKNYLFAGSDAGGDNIADAMTLIESAKLSGINPHDYLADVLARINEHKINRLHELLPW  523
            + + LF GS+ GG+  A   +LI + KL++++P+ YL +VL+ I +  +NR+ ELLPW
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

337) APA42C_08390 in NC_017150


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 263/401 (66%), Gaps = 21/401 (5%)

Query  14   ILREMIVSLQTEVARLSASARAYEALVQSLKIRIARLQKQKFGASSEKIDREIEQLELLL  73
            +L++ +   ++ +  L       E  ++ L+ ++ +L++ +FG+ SEK+ R I Q+E  L
Sbjct  11   LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADL  70

Query  74   EDVKiaiaaaDPSPDIREHDDSDGVVSSPRRRGKPK--VSDTTPR-ERIVLDPGEACPAC  130
            + +       +  +D       D  V  P R+ + +   +++ PR E+ +L ++  CP C
Sbjct  71   NRL-------QKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  131  GGPLRLVGEDVTEILDFIAAKLKVVETARLKKSCRHCETMVQPEAPSRPVPRGMAGPGLL  190
            GG+L  +GED +E L+++ + ++V+ T R K +C +C+T+VQ+ APSRP+ RG+AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  191  AHILVSKFDDHIPLYRQNEIFSRQGVDIPRSTLIDWCGQAVAVLRPLTDLIRQDVVKADL  250
            A++L SK+ +H PLY Q+EI++RQGV+++RS L +W +    +L PL + ++  V+  + 
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  251  LHADDTPIQVLDPRLRQAGKPRGVKEGRIWTYLRDPRPWGGSDPPAVAYWFSPDRKGINP  310
            LHADDTP+QVL P        +  K GR+W+Y+R+ R  G++ +PAV + +SPDRK+I+P
Sbjct  244  LHADDTPVQVLLP------GNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHP  297

Query  311  QTHLAQFRGILQADAYAGFRDLYKPDATGTVHVREAACWAHLRRAFHDVWKGSDSTIARE  370
            QTHLA F G+LQADAYAGF +LY+ ++     + EAACWAH RR +HDV     S+++ E
Sbjct  298  QTHLACFSGVLQADAYAGFNELYRNGG-----ITEAACWAHARRKIHDVHVRIPSALTEE  352

Query  371  ALEQIGELYDIERQLTGSPAPYRLAVRQEKSRPRVTAFHAW  411
            ALEQIG+LY IE ++ G PA  RLA RQ K++P + ++++W
Sbjct  353  ALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESW  393


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  466  RKNYLFAGSDAGGDNIADAMTLIESAKLSGINPHDYLADVLARINEHKINRLHELLPW  523
            + + LF GS+ GG+  A   +LI + KL++++P+ YL +VL+ I +  +NR+ ELLPW
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

338) APA42C_17910 in NC_017150


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 263/401 (66%), Gaps = 21/401 (5%)

Query  14   ILREMIVSLQTEVARLSASARAYEALVQSLKIRIARLQKQKFGASSEKIDREIEQLELLL  73
            +L++ +   ++ +  L       E  ++ L+ ++ +L++ +FG+ SEK+ R I Q+E  L
Sbjct  11   LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADL  70

Query  74   EDVKiaiaaaDPSPDIREHDDSDGVVSSPRRRGKPK--VSDTTPR-ERIVLDPGEACPAC  130
            + +       +  +D       D  V  P R+ + +   +++ PR E+ +L ++  CP C
Sbjct  71   NRL-------QKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  131  GGPLRLVGEDVTEILDFIAAKLKVVETARLKKSCRHCETMVQPEAPSRPVPRGMAGPGLL  190
            GG+L  +GED +E L+++ + ++V+ T R K +C +C+T+VQ+ APSRP+ RG+AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  191  AHILVSKFDDHIPLYRQNEIFSRQGVDIPRSTLIDWCGQAVAVLRPLTDLIRQDVVKADL  250
            A++L SK+ +H PLY Q+EI++RQGV+++RS L +W +    +L PL + ++  V+  + 
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  251  LHADDTPIQVLDPRLRQAGKPRGVKEGRIWTYLRDPRPWGGSDPPAVAYWFSPDRKGINP  310
            LHADDTP+QVL P        +  K GR+W+Y+R+ R  G++ +PAV + +SPDRK+I+P
Sbjct  244  LHADDTPVQVLLP------GNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHP  297

Query  311  QTHLAQFRGILQADAYAGFRDLYKPDATGTVHVREAACWAHLRRAFHDVWKGSDSTIARE  370
            QTHLA F G+LQADAYAGF +LY+ ++     + EAACWAH RR +HDV     S+++ E
Sbjct  298  QTHLACFSGVLQADAYAGFNELYRNGG-----ITEAACWAHARRKIHDVHVRIPSALTEE  352

Query  371  ALEQIGELYDIERQLTGSPAPYRLAVRQEKSRPRVTAFHAW  411
            ALEQIG+LY IE ++ G PA  RLA RQ K++P + ++++W
Sbjct  353  ALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESW  393


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  466  RKNYLFAGSDAGGDNIADAMTLIESAKLSGINPHDYLADVLARINEHKINRLHELLPW  523
            + + LF GS+ GG+  A   +LI + KL++++P+ YL +VL+ I +  +NR+ ELLPW
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

339) APA42C_18220 in NC_017150


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 263/401 (66%), Gaps = 21/401 (5%)

Query  14   ILREMIVSLQTEVARLSASARAYEALVQSLKIRIARLQKQKFGASSEKIDREIEQLELLL  73
            +L++ +   ++ +  L       E  ++ L+ ++ +L++ +FG+ SEK+ R I Q+E  L
Sbjct  11   LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADL  70

Query  74   EDVKiaiaaaDPSPDIREHDDSDGVVSSPRRRGKPK--VSDTTPR-ERIVLDPGEACPAC  130
            + +       +  +D       D  V  P R+ + +   +++ PR E+ +L ++  CP C
Sbjct  71   NRL-------QKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  131  GGPLRLVGEDVTEILDFIAAKLKVVETARLKKSCRHCETMVQPEAPSRPVPRGMAGPGLL  190
            GG+L  +GED +E L+++ + ++V+ T R K +C +C+T+VQ+ APSRP+ RG+AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  191  AHILVSKFDDHIPLYRQNEIFSRQGVDIPRSTLIDWCGQAVAVLRPLTDLIRQDVVKADL  250
            A++L SK+ +H PLY Q+EI++RQGV+++RS L +W +    +L PL + ++  V+  + 
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  251  LHADDTPIQVLDPRLRQAGKPRGVKEGRIWTYLRDPRPWGGSDPPAVAYWFSPDRKGINP  310
            LHADDTP+QVL P        +  K GR+W+Y+R+ R  G++ +PAV + +SPDRK+I+P
Sbjct  244  LHADDTPVQVLLP------GNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHP  297

Query  311  QTHLAQFRGILQADAYAGFRDLYKPDATGTVHVREAACWAHLRRAFHDVWKGSDSTIARE  370
            QTHLA F G+LQADAYAGF +LY+ ++     + EAACWAH RR +HDV     S+++ E
Sbjct  298  QTHLACFSGVLQADAYAGFNELYRNGG-----ITEAACWAHARRKIHDVHVRIPSALTEE  352

Query  371  ALEQIGELYDIERQLTGSPAPYRLAVRQEKSRPRVTAFHAW  411
            ALEQIG+LY IE ++ G PA  RLA RQ K++P + ++++W
Sbjct  353  ALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESW  393


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  466  RKNYLFAGSDAGGDNIADAMTLIESAKLSGINPHDYLADVLARINEHKINRLHELLPW  523
            + + LF GS+ GG+  A   +LI + KL++++P+ YL +VL+ I +  +NR+ ELLPW
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

340) APA42C_21630 in NC_017150


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 263/401 (66%), Gaps = 21/401 (5%)

Query  14   ILREMIVSLQTEVARLSASARAYEALVQSLKIRIARLQKQKFGASSEKIDREIEQLELLL  73
            +L++ +   ++ +  L       E  ++ L+ ++ +L++ +FG+ SEK+ R I Q+E  L
Sbjct  11   LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADL  70

Query  74   EDVKiaiaaaDPSPDIREHDDSDGVVSSPRRRGKPK--VSDTTPR-ERIVLDPGEACPAC  130
            + +       +  +D       D  V  P R+ + +   +++ PR E+ +L ++  CP C
Sbjct  71   NRL-------QKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  131  GGPLRLVGEDVTEILDFIAAKLKVVETARLKKSCRHCETMVQPEAPSRPVPRGMAGPGLL  190
            GG+L  +GED +E L+++ + ++V+ T R K +C +C+T+VQ+ APSRP+ RG+AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  191  AHILVSKFDDHIPLYRQNEIFSRQGVDIPRSTLIDWCGQAVAVLRPLTDLIRQDVVKADL  250
            A++L SK+ +H PLY Q+EI++RQGV+++RS L +W +    +L PL + ++  V+  + 
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  251  LHADDTPIQVLDPRLRQAGKPRGVKEGRIWTYLRDPRPWGGSDPPAVAYWFSPDRKGINP  310
            LHADDTP+QVL P        +  K GR+W+Y+R+ R  G++ +PAV + +SPDRK+I+P
Sbjct  244  LHADDTPVQVLLP------GNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHP  297

Query  311  QTHLAQFRGILQADAYAGFRDLYKPDATGTVHVREAACWAHLRRAFHDVWKGSDSTIARE  370
            QTHLA F G+LQADAYAGF +LY+ ++     + EAACWAH RR +HDV     S+++ E
Sbjct  298  QTHLACFSGVLQADAYAGFNELYRNGG-----ITEAACWAHARRKIHDVHVRIPSALTEE  352

Query  371  ALEQIGELYDIERQLTGSPAPYRLAVRQEKSRPRVTAFHAW  411
            ALEQIG+LY IE ++ G PA  RLA RQ K++P + ++++W
Sbjct  353  ALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESW  393


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  466  RKNYLFAGSDAGGDNIADAMTLIESAKLSGINPHDYLADVLARINEHKINRLHELLPW  523
            + + LF GS+ GG+  A   +LI + KL++++P+ YL +VL+ I +  +NR+ ELLPW
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

341) APA01_01780 in NC_013209


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 263/401 (66%), Gaps = 21/401 (5%)

Query  14   ILREMIVSLQTEVARLSASARAYEALVQSLKIRIARLQKQKFGASSEKIDREIEQLELLL  73
            +L++ +   ++ +  L       E  ++ L+ ++ +L++ +FG+ SEK+ R I Q+E  L
Sbjct  11   LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADL  70

Query  74   EDVKiaiaaaDPSPDIREHDDSDGVVSSPRRRGKPK--VSDTTPR-ERIVLDPGEACPAC  130
            + +       +  +D       D  V  P R+ + +   +++ PR E+ +L ++  CP C
Sbjct  71   NRL-------QKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  131  GGPLRLVGEDVTEILDFIAAKLKVVETARLKKSCRHCETMVQPEAPSRPVPRGMAGPGLL  190
            GG+L  +GED +E L+++ + ++V+ T R K +C +C+T+VQ+ APSRP+ RG+AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  191  AHILVSKFDDHIPLYRQNEIFSRQGVDIPRSTLIDWCGQAVAVLRPLTDLIRQDVVKADL  250
            A++L SK+ +H PLY Q+EI++RQGV+++RS L +W +    +L PL + ++  V+  + 
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  251  LHADDTPIQVLDPRLRQAGKPRGVKEGRIWTYLRDPRPWGGSDPPAVAYWFSPDRKGINP  310
            LHADDTP+QVL P        +  K GR+W+Y+R+ R  G++ +PAV + +SPDRK+I+P
Sbjct  244  LHADDTPVQVLLP------GNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHP  297

Query  311  QTHLAQFRGILQADAYAGFRDLYKPDATGTVHVREAACWAHLRRAFHDVWKGSDSTIARE  370
            QTHLA F G+LQADAYAGF +LY+ ++     + EAACWAH RR +HDV     S+++ E
Sbjct  298  QTHLACFSGVLQADAYAGFNELYRNGG-----ITEAACWAHARRKIHDVHVRIPSALTEE  352

Query  371  ALEQIGELYDIERQLTGSPAPYRLAVRQEKSRPRVTAFHAW  411
            ALEQIG+LY IE ++ G PA  RLA RQ K++P + ++++W
Sbjct  353  ALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESW  393


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  466  RKNYLFAGSDAGGDNIADAMTLIESAKLSGINPHDYLADVLARINEHKINRLHELLPW  523
            + + LF GS+ GG+  A   +LI + KL++++P+ YL +VL+ I +  +NR+ ELLPW
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

342) APA01_08390 in NC_013209


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 263/401 (66%), Gaps = 21/401 (5%)

Query  14   ILREMIVSLQTEVARLSASARAYEALVQSLKIRIARLQKQKFGASSEKIDREIEQLELLL  73
            +L++ +   ++ +  L       E  ++ L+ ++ +L++ +FG+ SEK+ R I Q+E  L
Sbjct  11   LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADL  70

Query  74   EDVKiaiaaaDPSPDIREHDDSDGVVSSPRRRGKPK--VSDTTPR-ERIVLDPGEACPAC  130
            + +       +  +D       D  V  P R+ + +   +++ PR E+ +L ++  CP C
Sbjct  71   NRL-------QKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  131  GGPLRLVGEDVTEILDFIAAKLKVVETARLKKSCRHCETMVQPEAPSRPVPRGMAGPGLL  190
            GG+L  +GED +E L+++ + ++V+ T R K +C +C+T+VQ+ APSRP+ RG+AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  191  AHILVSKFDDHIPLYRQNEIFSRQGVDIPRSTLIDWCGQAVAVLRPLTDLIRQDVVKADL  250
            A++L SK+ +H PLY Q+EI++RQGV+++RS L +W +    +L PL + ++  V+  + 
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  251  LHADDTPIQVLDPRLRQAGKPRGVKEGRIWTYLRDPRPWGGSDPPAVAYWFSPDRKGINP  310
            LHADDTP+QVL P        +  K GR+W+Y+R+ R  G++ +PAV + +SPDRK+I+P
Sbjct  244  LHADDTPVQVLLP------GNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHP  297

Query  311  QTHLAQFRGILQADAYAGFRDLYKPDATGTVHVREAACWAHLRRAFHDVWKGSDSTIARE  370
            QTHLA F G+LQADAYAGF +LY+ ++     + EAACWAH RR +HDV     S+++ E
Sbjct  298  QTHLACFSGVLQADAYAGFNELYRNGG-----ITEAACWAHARRKIHDVHVRIPSALTEE  352

Query  371  ALEQIGELYDIERQLTGSPAPYRLAVRQEKSRPRVTAFHAW  411
            ALEQIG+LY IE ++ G PA  RLA RQ K++P + ++++W
Sbjct  353  ALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESW  393


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  466  RKNYLFAGSDAGGDNIADAMTLIESAKLSGINPHDYLADVLARINEHKINRLHELLPW  523
            + + LF GS+ GG+  A   +LI + KL++++P+ YL +VL+ I +  +NR+ ELLPW
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

343) APA01_17910 in NC_013209


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 263/401 (66%), Gaps = 21/401 (5%)

Query  14   ILREMIVSLQTEVARLSASARAYEALVQSLKIRIARLQKQKFGASSEKIDREIEQLELLL  73
            +L++ +   ++ +  L       E  ++ L+ ++ +L++ +FG+ SEK+ R I Q+E  L
Sbjct  11   LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADL  70

Query  74   EDVKiaiaaaDPSPDIREHDDSDGVVSSPRRRGKPK--VSDTTPR-ERIVLDPGEACPAC  130
            + +       +  +D       D  V  P R+ + +   +++ PR E+ +L ++  CP C
Sbjct  71   NRL-------QKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  131  GGPLRLVGEDVTEILDFIAAKLKVVETARLKKSCRHCETMVQPEAPSRPVPRGMAGPGLL  190
            GG+L  +GED +E L+++ + ++V+ T R K +C +C+T+VQ+ APSRP+ RG+AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  191  AHILVSKFDDHIPLYRQNEIFSRQGVDIPRSTLIDWCGQAVAVLRPLTDLIRQDVVKADL  250
            A++L SK+ +H PLY Q+EI++RQGV+++RS L +W +    +L PL + ++  V+  + 
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  251  LHADDTPIQVLDPRLRQAGKPRGVKEGRIWTYLRDPRPWGGSDPPAVAYWFSPDRKGINP  310
            LHADDTP+QVL P        +  K GR+W+Y+R+ R  G++ +PAV + +SPDRK+I+P
Sbjct  244  LHADDTPVQVLLP------GNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHP  297

Query  311  QTHLAQFRGILQADAYAGFRDLYKPDATGTVHVREAACWAHLRRAFHDVWKGSDSTIARE  370
            QTHLA F G+LQADAYAGF +LY+ ++     + EAACWAH RR +HDV     S+++ E
Sbjct  298  QTHLACFSGVLQADAYAGFNELYRNGG-----ITEAACWAHARRKIHDVHVRIPSALTEE  352

Query  371  ALEQIGELYDIERQLTGSPAPYRLAVRQEKSRPRVTAFHAW  411
            ALEQIG+LY IE ++ G PA  RLA RQ K++P + ++++W
Sbjct  353  ALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESW  393


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  466  RKNYLFAGSDAGGDNIADAMTLIESAKLSGINPHDYLADVLARINEHKINRLHELLPW  523
            + + LF GS+ GG+  A   +LI + KL++++P+ YL +VL+ I +  +NR+ ELLPW
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

344) APA01_18220 in NC_013209


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 263/401 (66%), Gaps = 21/401 (5%)

Query  14   ILREMIVSLQTEVARLSASARAYEALVQSLKIRIARLQKQKFGASSEKIDREIEQLELLL  73
            +L++ +   ++ +  L       E  ++ L+ ++ +L++ +FG+ SEK+ R I Q+E  L
Sbjct  11   LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADL  70

Query  74   EDVKiaiaaaDPSPDIREHDDSDGVVSSPRRRGKPK--VSDTTPR-ERIVLDPGEACPAC  130
            + +       +  +D       D  V  P R+ + +   +++ PR E+ +L ++  CP C
Sbjct  71   NRL-------QKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  131  GGPLRLVGEDVTEILDFIAAKLKVVETARLKKSCRHCETMVQPEAPSRPVPRGMAGPGLL  190
            GG+L  +GED +E L+++ + ++V+ T R K +C +C+T+VQ+ APSRP+ RG+AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  191  AHILVSKFDDHIPLYRQNEIFSRQGVDIPRSTLIDWCGQAVAVLRPLTDLIRQDVVKADL  250
            A++L SK+ +H PLY Q+EI++RQGV+++RS L +W +    +L PL + ++  V+  + 
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  251  LHADDTPIQVLDPRLRQAGKPRGVKEGRIWTYLRDPRPWGGSDPPAVAYWFSPDRKGINP  310
            LHADDTP+QVL P        +  K GR+W+Y+R+ R  G++ +PAV + +SPDRK+I+P
Sbjct  244  LHADDTPVQVLLP------GNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHP  297

Query  311  QTHLAQFRGILQADAYAGFRDLYKPDATGTVHVREAACWAHLRRAFHDVWKGSDSTIARE  370
            QTHLA F G+LQADAYAGF +LY+ ++     + EAACWAH RR +HDV     S+++ E
Sbjct  298  QTHLACFSGVLQADAYAGFNELYRNGG-----ITEAACWAHARRKIHDVHVRIPSALTEE  352

Query  371  ALEQIGELYDIERQLTGSPAPYRLAVRQEKSRPRVTAFHAW  411
            ALEQIG+LY IE ++ G PA  RLA RQ K++P + ++++W
Sbjct  353  ALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESW  393


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  466  RKNYLFAGSDAGGDNIADAMTLIESAKLSGINPHDYLADVLARINEHKINRLHELLPW  523
            + + LF GS+ GG+  A   +LI + KL++++P+ YL +VL+ I +  +NR+ ELLPW
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

345) APA01_21630 in NC_013209


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 263/401 (66%), Gaps = 21/401 (5%)

Query  14   ILREMIVSLQTEVARLSASARAYEALVQSLKIRIARLQKQKFGASSEKIDREIEQLELLL  73
            +L++ +   ++ +  L       E  ++ L+ ++ +L++ +FG+ SEK+ R I Q+E  L
Sbjct  11   LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADL  70

Query  74   EDVKiaiaaaDPSPDIREHDDSDGVVSSPRRRGKPK--VSDTTPR-ERIVLDPGEACPAC  130
            + +       +  +D       D  V  P R+ + +   +++ PR E+ +L ++  CP C
Sbjct  71   NRL-------QKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  131  GGPLRLVGEDVTEILDFIAAKLKVVETARLKKSCRHCETMVQPEAPSRPVPRGMAGPGLL  190
            GG+L  +GED +E L+++ + ++V+ T R K +C +C+T+VQ+ APSRP+ RG+AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  191  AHILVSKFDDHIPLYRQNEIFSRQGVDIPRSTLIDWCGQAVAVLRPLTDLIRQDVVKADL  250
            A++L SK+ +H PLY Q+EI++RQGV+++RS L +W +    +L PL + ++  V+  + 
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  251  LHADDTPIQVLDPRLRQAGKPRGVKEGRIWTYLRDPRPWGGSDPPAVAYWFSPDRKGINP  310
            LHADDTP+QVL P        +  K GR+W+Y+R+ R  G++ +PAV + +SPDRK+I+P
Sbjct  244  LHADDTPVQVLLP------GNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHP  297

Query  311  QTHLAQFRGILQADAYAGFRDLYKPDATGTVHVREAACWAHLRRAFHDVWKGSDSTIARE  370
            QTHLA F G+LQADAYAGF +LY+ ++     + EAACWAH RR +HDV     S+++ E
Sbjct  298  QTHLACFSGVLQADAYAGFNELYRNGG-----ITEAACWAHARRKIHDVHVRIPSALTEE  352

Query  371  ALEQIGELYDIERQLTGSPAPYRLAVRQEKSRPRVTAFHAW  411
            ALEQIG+LY IE ++ G PA  RLA RQ K++P + ++++W
Sbjct  353  ALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESW  393


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  466  RKNYLFAGSDAGGDNIADAMTLIESAKLSGINPHDYLADVLARINEHKINRLHELLPW  523
            + + LF GS+ GG+  A   +LI + KL++++P+ YL +VL+ I +  +NR+ ELLPW
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

346) APA03_01780 in NC_017100


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 263/401 (66%), Gaps = 21/401 (5%)

Query  14   ILREMIVSLQTEVARLSASARAYEALVQSLKIRIARLQKQKFGASSEKIDREIEQLELLL  73
            +L++ +   ++ +  L       E  ++ L+ ++ +L++ +FG+ SEK+ R I Q+E  L
Sbjct  11   LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADL  70

Query  74   EDVKiaiaaaDPSPDIREHDDSDGVVSSPRRRGKPK--VSDTTPR-ERIVLDPGEACPAC  130
            + +       +  +D       D  V  P R+ + +   +++ PR E+ +L ++  CP C
Sbjct  71   NRL-------QKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  131  GGPLRLVGEDVTEILDFIAAKLKVVETARLKKSCRHCETMVQPEAPSRPVPRGMAGPGLL  190
            GG+L  +GED +E L+++ + ++V+ T R K +C +C+T+VQ+ APSRP+ RG+AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  191  AHILVSKFDDHIPLYRQNEIFSRQGVDIPRSTLIDWCGQAVAVLRPLTDLIRQDVVKADL  250
            A++L SK+ +H PLY Q+EI++RQGV+++RS L +W +    +L PL + ++  V+  + 
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  251  LHADDTPIQVLDPRLRQAGKPRGVKEGRIWTYLRDPRPWGGSDPPAVAYWFSPDRKGINP  310
            LHADDTP+QVL P        +  K GR+W+Y+R+ R  G++ +PAV + +SPDRK+I+P
Sbjct  244  LHADDTPVQVLLP------GNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHP  297

Query  311  QTHLAQFRGILQADAYAGFRDLYKPDATGTVHVREAACWAHLRRAFHDVWKGSDSTIARE  370
            QTHLA F G+LQADAYAGF +LY+ ++     + EAACWAH RR +HDV     S+++ E
Sbjct  298  QTHLACFSGVLQADAYAGFNELYRNGG-----ITEAACWAHARRKIHDVHVRIPSALTEE  352

Query  371  ALEQIGELYDIERQLTGSPAPYRLAVRQEKSRPRVTAFHAW  411
            ALEQIG+LY IE ++ G PA  RLA RQ K++P + ++++W
Sbjct  353  ALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESW  393


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  466  RKNYLFAGSDAGGDNIADAMTLIESAKLSGINPHDYLADVLARINEHKINRLHELLPW  523
            + + LF GS+ GG+  A   +LI + KL++++P+ YL +VL+ I +  +NR+ ELLPW
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

347) APA03_08390 in NC_017100


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 263/401 (66%), Gaps = 21/401 (5%)

Query  14   ILREMIVSLQTEVARLSASARAYEALVQSLKIRIARLQKQKFGASSEKIDREIEQLELLL  73
            +L++ +   ++ +  L       E  ++ L+ ++ +L++ +FG+ SEK+ R I Q+E  L
Sbjct  11   LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADL  70

Query  74   EDVKiaiaaaDPSPDIREHDDSDGVVSSPRRRGKPK--VSDTTPR-ERIVLDPGEACPAC  130
            + +       +  +D       D  V  P R+ + +   +++ PR E+ +L ++  CP C
Sbjct  71   NRL-------QKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  131  GGPLRLVGEDVTEILDFIAAKLKVVETARLKKSCRHCETMVQPEAPSRPVPRGMAGPGLL  190
            GG+L  +GED +E L+++ + ++V+ T R K +C +C+T+VQ+ APSRP+ RG+AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  191  AHILVSKFDDHIPLYRQNEIFSRQGVDIPRSTLIDWCGQAVAVLRPLTDLIRQDVVKADL  250
            A++L SK+ +H PLY Q+EI++RQGV+++RS L +W +    +L PL + ++  V+  + 
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  251  LHADDTPIQVLDPRLRQAGKPRGVKEGRIWTYLRDPRPWGGSDPPAVAYWFSPDRKGINP  310
            LHADDTP+QVL P        +  K GR+W+Y+R+ R  G++ +PAV + +SPDRK+I+P
Sbjct  244  LHADDTPVQVLLP------GNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHP  297

Query  311  QTHLAQFRGILQADAYAGFRDLYKPDATGTVHVREAACWAHLRRAFHDVWKGSDSTIARE  370
            QTHLA F G+LQADAYAGF +LY+ ++     + EAACWAH RR +HDV     S+++ E
Sbjct  298  QTHLACFSGVLQADAYAGFNELYRNGG-----ITEAACWAHARRKIHDVHVRIPSALTEE  352

Query  371  ALEQIGELYDIERQLTGSPAPYRLAVRQEKSRPRVTAFHAW  411
            ALEQIG+LY IE ++ G PA  RLA RQ K++P + ++++W
Sbjct  353  ALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESW  393


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  466  RKNYLFAGSDAGGDNIADAMTLIESAKLSGINPHDYLADVLARINEHKINRLHELLPW  523
            + + LF GS+ GG+  A   +LI + KL++++P+ YL +VL+ I +  +NR+ ELLPW
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

348) APA03_17910 in NC_017100


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 263/401 (66%), Gaps = 21/401 (5%)

Query  14   ILREMIVSLQTEVARLSASARAYEALVQSLKIRIARLQKQKFGASSEKIDREIEQLELLL  73
            +L++ +   ++ +  L       E  ++ L+ ++ +L++ +FG+ SEK+ R I Q+E  L
Sbjct  11   LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADL  70

Query  74   EDVKiaiaaaDPSPDIREHDDSDGVVSSPRRRGKPK--VSDTTPR-ERIVLDPGEACPAC  130
            + +       +  +D       D  V  P R+ + +   +++ PR E+ +L ++  CP C
Sbjct  71   NRL-------QKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  131  GGPLRLVGEDVTEILDFIAAKLKVVETARLKKSCRHCETMVQPEAPSRPVPRGMAGPGLL  190
            GG+L  +GED +E L+++ + ++V+ T R K +C +C+T+VQ+ APSRP+ RG+AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  191  AHILVSKFDDHIPLYRQNEIFSRQGVDIPRSTLIDWCGQAVAVLRPLTDLIRQDVVKADL  250
            A++L SK+ +H PLY Q+EI++RQGV+++RS L +W +    +L PL + ++  V+  + 
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  251  LHADDTPIQVLDPRLRQAGKPRGVKEGRIWTYLRDPRPWGGSDPPAVAYWFSPDRKGINP  310
            LHADDTP+QVL P        +  K GR+W+Y+R+ R  G++ +PAV + +SPDRK+I+P
Sbjct  244  LHADDTPVQVLLP------GNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHP  297

Query  311  QTHLAQFRGILQADAYAGFRDLYKPDATGTVHVREAACWAHLRRAFHDVWKGSDSTIARE  370
            QTHLA F G+LQADAYAGF +LY+ ++     + EAACWAH RR +HDV     S+++ E
Sbjct  298  QTHLACFSGVLQADAYAGFNELYRNGG-----ITEAACWAHARRKIHDVHVRIPSALTEE  352

Query  371  ALEQIGELYDIERQLTGSPAPYRLAVRQEKSRPRVTAFHAW  411
            ALEQIG+LY IE ++ G PA  RLA RQ K++P + ++++W
Sbjct  353  ALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESW  393


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  466  RKNYLFAGSDAGGDNIADAMTLIESAKLSGINPHDYLADVLARINEHKINRLHELLPW  523
            + + LF GS+ GG+  A   +LI + KL++++P+ YL +VL+ I +  +NR+ ELLPW
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

349) APA03_18220 in NC_017100


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 263/401 (66%), Gaps = 21/401 (5%)

Query  14   ILREMIVSLQTEVARLSASARAYEALVQSLKIRIARLQKQKFGASSEKIDREIEQLELLL  73
            +L++ +   ++ +  L       E  ++ L+ ++ +L++ +FG+ SEK+ R I Q+E  L
Sbjct  11   LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADL  70

Query  74   EDVKiaiaaaDPSPDIREHDDSDGVVSSPRRRGKPK--VSDTTPR-ERIVLDPGEACPAC  130
            + +       +  +D       D  V  P R+ + +   +++ PR E+ +L ++  CP C
Sbjct  71   NRL-------QKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  131  GGPLRLVGEDVTEILDFIAAKLKVVETARLKKSCRHCETMVQPEAPSRPVPRGMAGPGLL  190
            GG+L  +GED +E L+++ + ++V+ T R K +C +C+T+VQ+ APSRP+ RG+AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  191  AHILVSKFDDHIPLYRQNEIFSRQGVDIPRSTLIDWCGQAVAVLRPLTDLIRQDVVKADL  250
            A++L SK+ +H PLY Q+EI++RQGV+++RS L +W +    +L PL + ++  V+  + 
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  251  LHADDTPIQVLDPRLRQAGKPRGVKEGRIWTYLRDPRPWGGSDPPAVAYWFSPDRKGINP  310
            LHADDTP+QVL P        +  K GR+W+Y+R+ R  G++ +PAV + +SPDRK+I+P
Sbjct  244  LHADDTPVQVLLP------GNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHP  297

Query  311  QTHLAQFRGILQADAYAGFRDLYKPDATGTVHVREAACWAHLRRAFHDVWKGSDSTIARE  370
            QTHLA F G+LQADAYAGF +LY+ ++     + EAACWAH RR +HDV     S+++ E
Sbjct  298  QTHLACFSGVLQADAYAGFNELYRNGG-----ITEAACWAHARRKIHDVHVRIPSALTEE  352

Query  371  ALEQIGELYDIERQLTGSPAPYRLAVRQEKSRPRVTAFHAW  411
            ALEQIG+LY IE ++ G PA  RLA RQ K++P + ++++W
Sbjct  353  ALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESW  393


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  466  RKNYLFAGSDAGGDNIADAMTLIESAKLSGINPHDYLADVLARINEHKINRLHELLPW  523
            + + LF GS+ GG+  A   +LI + KL++++P+ YL +VL+ I +  +NR+ ELLPW
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

350) APA03_21630 in NC_017100


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 263/401 (66%), Gaps = 21/401 (5%)

Query  14   ILREMIVSLQTEVARLSASARAYEALVQSLKIRIARLQKQKFGASSEKIDREIEQLELLL  73
            +L++ +   ++ +  L       E  ++ L+ ++ +L++ +FG+ SEK+ R I Q+E  L
Sbjct  11   LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADL  70

Query  74   EDVKiaiaaaDPSPDIREHDDSDGVVSSPRRRGKPK--VSDTTPR-ERIVLDPGEACPAC  130
            + +       +  +D       D  V  P R+ + +   +++ PR E+ +L ++  CP C
Sbjct  71   NRL-------QKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  131  GGPLRLVGEDVTEILDFIAAKLKVVETARLKKSCRHCETMVQPEAPSRPVPRGMAGPGLL  190
            GG+L  +GED +E L+++ + ++V+ T R K +C +C+T+VQ+ APSRP+ RG+AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  191  AHILVSKFDDHIPLYRQNEIFSRQGVDIPRSTLIDWCGQAVAVLRPLTDLIRQDVVKADL  250
            A++L SK+ +H PLY Q+EI++RQGV+++RS L +W +    +L PL + ++  V+  + 
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  251  LHADDTPIQVLDPRLRQAGKPRGVKEGRIWTYLRDPRPWGGSDPPAVAYWFSPDRKGINP  310
            LHADDTP+QVL P        +  K GR+W+Y+R+ R  G++ +PAV + +SPDRK+I+P
Sbjct  244  LHADDTPVQVLLP------GNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHP  297

Query  311  QTHLAQFRGILQADAYAGFRDLYKPDATGTVHVREAACWAHLRRAFHDVWKGSDSTIARE  370
            QTHLA F G+LQADAYAGF +LY+ ++     + EAACWAH RR +HDV     S+++ E
Sbjct  298  QTHLACFSGVLQADAYAGFNELYRNGG-----ITEAACWAHARRKIHDVHVRIPSALTEE  352

Query  371  ALEQIGELYDIERQLTGSPAPYRLAVRQEKSRPRVTAFHAW  411
            ALEQIG+LY IE ++ G PA  RLA RQ K++P + ++++W
Sbjct  353  ALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESW  393


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  466  RKNYLFAGSDAGGDNIADAMTLIESAKLSGINPHDYLADVLARINEHKINRLHELLPW  523
            + + LF GS+ GG+  A   +LI + KL++++P+ YL +VL+ I +  +NR+ ELLPW
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

351) APA07_01780 in NC_017121


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 263/401 (66%), Gaps = 21/401 (5%)

Query  14   ILREMIVSLQTEVARLSASARAYEALVQSLKIRIARLQKQKFGASSEKIDREIEQLELLL  73
            +L++ +   ++ +  L       E  ++ L+ ++ +L++ +FG+ SEK+ R I Q+E  L
Sbjct  11   LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADL  70

Query  74   EDVKiaiaaaDPSPDIREHDDSDGVVSSPRRRGKPK--VSDTTPR-ERIVLDPGEACPAC  130
            + +       +  +D       D  V  P R+ + +   +++ PR E+ +L ++  CP C
Sbjct  71   NRL-------QKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  131  GGPLRLVGEDVTEILDFIAAKLKVVETARLKKSCRHCETMVQPEAPSRPVPRGMAGPGLL  190
            GG+L  +GED +E L+++ + ++V+ T R K +C +C+T+VQ+ APSRP+ RG+AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  191  AHILVSKFDDHIPLYRQNEIFSRQGVDIPRSTLIDWCGQAVAVLRPLTDLIRQDVVKADL  250
            A++L SK+ +H PLY Q+EI++RQGV+++RS L +W +    +L PL + ++  V+  + 
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  251  LHADDTPIQVLDPRLRQAGKPRGVKEGRIWTYLRDPRPWGGSDPPAVAYWFSPDRKGINP  310
            LHADDTP+QVL P        +  K GR+W+Y+R+ R  G++ +PAV + +SPDRK+I+P
Sbjct  244  LHADDTPVQVLLP------GNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHP  297

Query  311  QTHLAQFRGILQADAYAGFRDLYKPDATGTVHVREAACWAHLRRAFHDVWKGSDSTIARE  370
            QTHLA F G+LQADAYAGF +LY+ ++     + EAACWAH RR +HDV     S+++ E
Sbjct  298  QTHLACFSGVLQADAYAGFNELYRNGG-----ITEAACWAHARRKIHDVHVRIPSALTEE  352

Query  371  ALEQIGELYDIERQLTGSPAPYRLAVRQEKSRPRVTAFHAW  411
            ALEQIG+LY IE ++ G PA  RLA RQ K++P + ++++W
Sbjct  353  ALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESW  393


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  466  RKNYLFAGSDAGGDNIADAMTLIESAKLSGINPHDYLADVLARINEHKINRLHELLPW  523
            + + LF GS+ GG+  A   +LI + KL++++P+ YL +VL+ I +  +NR+ ELLPW
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

352) APA07_08390 in NC_017121


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 263/401 (66%), Gaps = 21/401 (5%)

Query  14   ILREMIVSLQTEVARLSASARAYEALVQSLKIRIARLQKQKFGASSEKIDREIEQLELLL  73
            +L++ +   ++ +  L       E  ++ L+ ++ +L++ +FG+ SEK+ R I Q+E  L
Sbjct  11   LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADL  70

Query  74   EDVKiaiaaaDPSPDIREHDDSDGVVSSPRRRGKPK--VSDTTPR-ERIVLDPGEACPAC  130
            + +       +  +D       D  V  P R+ + +   +++ PR E+ +L ++  CP C
Sbjct  71   NRL-------QKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  131  GGPLRLVGEDVTEILDFIAAKLKVVETARLKKSCRHCETMVQPEAPSRPVPRGMAGPGLL  190
            GG+L  +GED +E L+++ + ++V+ T R K +C +C+T+VQ+ APSRP+ RG+AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  191  AHILVSKFDDHIPLYRQNEIFSRQGVDIPRSTLIDWCGQAVAVLRPLTDLIRQDVVKADL  250
            A++L SK+ +H PLY Q+EI++RQGV+++RS L +W +    +L PL + ++  V+  + 
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  251  LHADDTPIQVLDPRLRQAGKPRGVKEGRIWTYLRDPRPWGGSDPPAVAYWFSPDRKGINP  310
            LHADDTP+QVL P        +  K GR+W+Y+R+ R  G++ +PAV + +SPDRK+I+P
Sbjct  244  LHADDTPVQVLLP------GNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHP  297

Query  311  QTHLAQFRGILQADAYAGFRDLYKPDATGTVHVREAACWAHLRRAFHDVWKGSDSTIARE  370
            QTHLA F G+LQADAYAGF +LY+ ++     + EAACWAH RR +HDV     S+++ E
Sbjct  298  QTHLACFSGVLQADAYAGFNELYRNGG-----ITEAACWAHARRKIHDVHVRIPSALTEE  352

Query  371  ALEQIGELYDIERQLTGSPAPYRLAVRQEKSRPRVTAFHAW  411
            ALEQIG+LY IE ++ G PA  RLA RQ K++P + ++++W
Sbjct  353  ALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESW  393


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  466  RKNYLFAGSDAGGDNIADAMTLIESAKLSGINPHDYLADVLARINEHKINRLHELLPW  523
            + + LF GS+ GG+  A   +LI + KL++++P+ YL +VL+ I +  +NR+ ELLPW
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

353) APA07_17910 in NC_017121


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 263/401 (66%), Gaps = 21/401 (5%)

Query  14   ILREMIVSLQTEVARLSASARAYEALVQSLKIRIARLQKQKFGASSEKIDREIEQLELLL  73
            +L++ +   ++ +  L       E  ++ L+ ++ +L++ +FG+ SEK+ R I Q+E  L
Sbjct  11   LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADL  70

Query  74   EDVKiaiaaaDPSPDIREHDDSDGVVSSPRRRGKPK--VSDTTPR-ERIVLDPGEACPAC  130
            + +       +  +D       D  V  P R+ + +   +++ PR E+ +L ++  CP C
Sbjct  71   NRL-------QKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  131  GGPLRLVGEDVTEILDFIAAKLKVVETARLKKSCRHCETMVQPEAPSRPVPRGMAGPGLL  190
            GG+L  +GED +E L+++ + ++V+ T R K +C +C+T+VQ+ APSRP+ RG+AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  191  AHILVSKFDDHIPLYRQNEIFSRQGVDIPRSTLIDWCGQAVAVLRPLTDLIRQDVVKADL  250
            A++L SK+ +H PLY Q+EI++RQGV+++RS L +W +    +L PL + ++  V+  + 
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  251  LHADDTPIQVLDPRLRQAGKPRGVKEGRIWTYLRDPRPWGGSDPPAVAYWFSPDRKGINP  310
            LHADDTP+QVL P        +  K GR+W+Y+R+ R  G++ +PAV + +SPDRK+I+P
Sbjct  244  LHADDTPVQVLLP------GNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHP  297

Query  311  QTHLAQFRGILQADAYAGFRDLYKPDATGTVHVREAACWAHLRRAFHDVWKGSDSTIARE  370
            QTHLA F G+LQADAYAGF +LY+ ++     + EAACWAH RR +HDV     S+++ E
Sbjct  298  QTHLACFSGVLQADAYAGFNELYRNGG-----ITEAACWAHARRKIHDVHVRIPSALTEE  352

Query  371  ALEQIGELYDIERQLTGSPAPYRLAVRQEKSRPRVTAFHAW  411
            ALEQIG+LY IE ++ G PA  RLA RQ K++P + ++++W
Sbjct  353  ALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESW  393


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  466  RKNYLFAGSDAGGDNIADAMTLIESAKLSGINPHDYLADVLARINEHKINRLHELLPW  523
            + + LF GS+ GG+  A   +LI + KL++++P+ YL +VL+ I +  +NR+ ELLPW
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

354) APA07_18220 in NC_017121


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 263/401 (66%), Gaps = 21/401 (5%)

Query  14   ILREMIVSLQTEVARLSASARAYEALVQSLKIRIARLQKQKFGASSEKIDREIEQLELLL  73
            +L++ +   ++ +  L       E  ++ L+ ++ +L++ +FG+ SEK+ R I Q+E  L
Sbjct  11   LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADL  70

Query  74   EDVKiaiaaaDPSPDIREHDDSDGVVSSPRRRGKPK--VSDTTPR-ERIVLDPGEACPAC  130
            + +       +  +D       D  V  P R+ + +   +++ PR E+ +L ++  CP C
Sbjct  71   NRL-------QKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  131  GGPLRLVGEDVTEILDFIAAKLKVVETARLKKSCRHCETMVQPEAPSRPVPRGMAGPGLL  190
            GG+L  +GED +E L+++ + ++V+ T R K +C +C+T+VQ+ APSRP+ RG+AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  191  AHILVSKFDDHIPLYRQNEIFSRQGVDIPRSTLIDWCGQAVAVLRPLTDLIRQDVVKADL  250
            A++L SK+ +H PLY Q+EI++RQGV+++RS L +W +    +L PL + ++  V+  + 
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  251  LHADDTPIQVLDPRLRQAGKPRGVKEGRIWTYLRDPRPWGGSDPPAVAYWFSPDRKGINP  310
            LHADDTP+QVL P        +  K GR+W+Y+R+ R  G++ +PAV + +SPDRK+I+P
Sbjct  244  LHADDTPVQVLLP------GNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHP  297

Query  311  QTHLAQFRGILQADAYAGFRDLYKPDATGTVHVREAACWAHLRRAFHDVWKGSDSTIARE  370
            QTHLA F G+LQADAYAGF +LY+ ++     + EAACWAH RR +HDV     S+++ E
Sbjct  298  QTHLACFSGVLQADAYAGFNELYRNGG-----ITEAACWAHARRKIHDVHVRIPSALTEE  352

Query  371  ALEQIGELYDIERQLTGSPAPYRLAVRQEKSRPRVTAFHAW  411
            ALEQIG+LY IE ++ G PA  RLA RQ K++P + ++++W
Sbjct  353  ALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESW  393


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  466  RKNYLFAGSDAGGDNIADAMTLIESAKLSGINPHDYLADVLARINEHKINRLHELLPW  523
            + + LF GS+ GG+  A   +LI + KL++++P+ YL +VL+ I +  +NR+ ELLPW
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

355) APA07_21630 in NC_017121


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 263/401 (66%), Gaps = 21/401 (5%)

Query  14   ILREMIVSLQTEVARLSASARAYEALVQSLKIRIARLQKQKFGASSEKIDREIEQLELLL  73
            +L++ +   ++ +  L       E  ++ L+ ++ +L++ +FG+ SEK+ R I Q+E  L
Sbjct  11   LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADL  70

Query  74   EDVKiaiaaaDPSPDIREHDDSDGVVSSPRRRGKPK--VSDTTPR-ERIVLDPGEACPAC  130
            + +       +  +D       D  V  P R+ + +   +++ PR E+ +L ++  CP C
Sbjct  71   NRL-------QKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  131  GGPLRLVGEDVTEILDFIAAKLKVVETARLKKSCRHCETMVQPEAPSRPVPRGMAGPGLL  190
            GG+L  +GED +E L+++ + ++V+ T R K +C +C+T+VQ+ APSRP+ RG+AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  191  AHILVSKFDDHIPLYRQNEIFSRQGVDIPRSTLIDWCGQAVAVLRPLTDLIRQDVVKADL  250
            A++L SK+ +H PLY Q+EI++RQGV+++RS L +W +    +L PL + ++  V+  + 
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  251  LHADDTPIQVLDPRLRQAGKPRGVKEGRIWTYLRDPRPWGGSDPPAVAYWFSPDRKGINP  310
            LHADDTP+QVL P        +  K GR+W+Y+R+ R  G++ +PAV + +SPDRK+I+P
Sbjct  244  LHADDTPVQVLLP------GNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHP  297

Query  311  QTHLAQFRGILQADAYAGFRDLYKPDATGTVHVREAACWAHLRRAFHDVWKGSDSTIARE  370
            QTHLA F G+LQADAYAGF +LY+ ++     + EAACWAH RR +HDV     S+++ E
Sbjct  298  QTHLACFSGVLQADAYAGFNELYRNGG-----ITEAACWAHARRKIHDVHVRIPSALTEE  352

Query  371  ALEQIGELYDIERQLTGSPAPYRLAVRQEKSRPRVTAFHAW  411
            ALEQIG+LY IE ++ G PA  RLA RQ K++P + ++++W
Sbjct  353  ALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESW  393


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  466  RKNYLFAGSDAGGDNIADAMTLIESAKLSGINPHDYLADVLARINEHKINRLHELLPW  523
            + + LF GS+ GG+  A   +LI + KL++++P+ YL +VL+ I +  +NR+ ELLPW
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

356) APA12_01780 in NC_017108


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 263/401 (66%), Gaps = 21/401 (5%)

Query  14   ILREMIVSLQTEVARLSASARAYEALVQSLKIRIARLQKQKFGASSEKIDREIEQLELLL  73
            +L++ +   ++ +  L       E  ++ L+ ++ +L++ +FG+ SEK+ R I Q+E  L
Sbjct  11   LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADL  70

Query  74   EDVKiaiaaaDPSPDIREHDDSDGVVSSPRRRGKPK--VSDTTPR-ERIVLDPGEACPAC  130
            + +       +  +D       D  V  P R+ + +   +++ PR E+ +L ++  CP C
Sbjct  71   NRL-------QKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  131  GGPLRLVGEDVTEILDFIAAKLKVVETARLKKSCRHCETMVQPEAPSRPVPRGMAGPGLL  190
            GG+L  +GED +E L+++ + ++V+ T R K +C +C+T+VQ+ APSRP+ RG+AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  191  AHILVSKFDDHIPLYRQNEIFSRQGVDIPRSTLIDWCGQAVAVLRPLTDLIRQDVVKADL  250
            A++L SK+ +H PLY Q+EI++RQGV+++RS L +W +    +L PL + ++  V+  + 
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  251  LHADDTPIQVLDPRLRQAGKPRGVKEGRIWTYLRDPRPWGGSDPPAVAYWFSPDRKGINP  310
            LHADDTP+QVL P        +  K GR+W+Y+R+ R  G++ +PAV + +SPDRK+I+P
Sbjct  244  LHADDTPVQVLLP------GNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHP  297

Query  311  QTHLAQFRGILQADAYAGFRDLYKPDATGTVHVREAACWAHLRRAFHDVWKGSDSTIARE  370
            QTHLA F G+LQADAYAGF +LY+ ++     + EAACWAH RR +HDV     S+++ E
Sbjct  298  QTHLACFSGVLQADAYAGFNELYRNGG-----ITEAACWAHARRKIHDVHVRIPSALTEE  352

Query  371  ALEQIGELYDIERQLTGSPAPYRLAVRQEKSRPRVTAFHAW  411
            ALEQIG+LY IE ++ G PA  RLA RQ K++P + ++++W
Sbjct  353  ALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESW  393


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  466  RKNYLFAGSDAGGDNIADAMTLIESAKLSGINPHDYLADVLARINEHKINRLHELLPW  523
            + + LF GS+ GG+  A   +LI + KL++++P+ YL +VL+ I +  +NR+ ELLPW
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

357) APA12_08390 in NC_017108


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 263/401 (66%), Gaps = 21/401 (5%)

Query  14   ILREMIVSLQTEVARLSASARAYEALVQSLKIRIARLQKQKFGASSEKIDREIEQLELLL  73
            +L++ +   ++ +  L       E  ++ L+ ++ +L++ +FG+ SEK+ R I Q+E  L
Sbjct  11   LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADL  70

Query  74   EDVKiaiaaaDPSPDIREHDDSDGVVSSPRRRGKPK--VSDTTPR-ERIVLDPGEACPAC  130
            + +       +  +D       D  V  P R+ + +   +++ PR E+ +L ++  CP C
Sbjct  71   NRL-------QKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  131  GGPLRLVGEDVTEILDFIAAKLKVVETARLKKSCRHCETMVQPEAPSRPVPRGMAGPGLL  190
            GG+L  +GED +E L+++ + ++V+ T R K +C +C+T+VQ+ APSRP+ RG+AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  191  AHILVSKFDDHIPLYRQNEIFSRQGVDIPRSTLIDWCGQAVAVLRPLTDLIRQDVVKADL  250
            A++L SK+ +H PLY Q+EI++RQGV+++RS L +W +    +L PL + ++  V+  + 
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  251  LHADDTPIQVLDPRLRQAGKPRGVKEGRIWTYLRDPRPWGGSDPPAVAYWFSPDRKGINP  310
            LHADDTP+QVL P        +  K GR+W+Y+R+ R  G++ +PAV + +SPDRK+I+P
Sbjct  244  LHADDTPVQVLLP------GNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHP  297

Query  311  QTHLAQFRGILQADAYAGFRDLYKPDATGTVHVREAACWAHLRRAFHDVWKGSDSTIARE  370
            QTHLA F G+LQADAYAGF +LY+ ++     + EAACWAH RR +HDV     S+++ E
Sbjct  298  QTHLACFSGVLQADAYAGFNELYRNGG-----ITEAACWAHARRKIHDVHVRIPSALTEE  352

Query  371  ALEQIGELYDIERQLTGSPAPYRLAVRQEKSRPRVTAFHAW  411
            ALEQIG+LY IE ++ G PA  RLA RQ K++P + ++++W
Sbjct  353  ALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESW  393


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  466  RKNYLFAGSDAGGDNIADAMTLIESAKLSGINPHDYLADVLARINEHKINRLHELLPW  523
            + + LF GS+ GG+  A   +LI + KL++++P+ YL +VL+ I +  +NR+ ELLPW
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

358) APA12_17910 in NC_017108


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 263/401 (66%), Gaps = 21/401 (5%)

Query  14   ILREMIVSLQTEVARLSASARAYEALVQSLKIRIARLQKQKFGASSEKIDREIEQLELLL  73
            +L++ +   ++ +  L       E  ++ L+ ++ +L++ +FG+ SEK+ R I Q+E  L
Sbjct  11   LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADL  70

Query  74   EDVKiaiaaaDPSPDIREHDDSDGVVSSPRRRGKPK--VSDTTPR-ERIVLDPGEACPAC  130
            + +       +  +D       D  V  P R+ + +   +++ PR E+ +L ++  CP C
Sbjct  71   NRL-------QKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  131  GGPLRLVGEDVTEILDFIAAKLKVVETARLKKSCRHCETMVQPEAPSRPVPRGMAGPGLL  190
            GG+L  +GED +E L+++ + ++V+ T R K +C +C+T+VQ+ APSRP+ RG+AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  191  AHILVSKFDDHIPLYRQNEIFSRQGVDIPRSTLIDWCGQAVAVLRPLTDLIRQDVVKADL  250
            A++L SK+ +H PLY Q+EI++RQGV+++RS L +W +    +L PL + ++  V+  + 
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  251  LHADDTPIQVLDPRLRQAGKPRGVKEGRIWTYLRDPRPWGGSDPPAVAYWFSPDRKGINP  310
            LHADDTP+QVL P        +  K GR+W+Y+R+ R  G++ +PAV + +SPDRK+I+P
Sbjct  244  LHADDTPVQVLLP------GNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHP  297

Query  311  QTHLAQFRGILQADAYAGFRDLYKPDATGTVHVREAACWAHLRRAFHDVWKGSDSTIARE  370
            QTHLA F G+LQADAYAGF +LY+ ++     + EAACWAH RR +HDV     S+++ E
Sbjct  298  QTHLACFSGVLQADAYAGFNELYRNGG-----ITEAACWAHARRKIHDVHVRIPSALTEE  352

Query  371  ALEQIGELYDIERQLTGSPAPYRLAVRQEKSRPRVTAFHAW  411
            ALEQIG+LY IE ++ G PA  RLA RQ K++P + ++++W
Sbjct  353  ALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESW  393


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  466  RKNYLFAGSDAGGDNIADAMTLIESAKLSGINPHDYLADVLARINEHKINRLHELLPW  523
            + + LF GS+ GG+  A   +LI + KL++++P+ YL +VL+ I +  +NR+ ELLPW
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

359) APA12_18220 in NC_017108


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 263/401 (66%), Gaps = 21/401 (5%)

Query  14   ILREMIVSLQTEVARLSASARAYEALVQSLKIRIARLQKQKFGASSEKIDREIEQLELLL  73
            +L++ +   ++ +  L       E  ++ L+ ++ +L++ +FG+ SEK+ R I Q+E  L
Sbjct  11   LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADL  70

Query  74   EDVKiaiaaaDPSPDIREHDDSDGVVSSPRRRGKPK--VSDTTPR-ERIVLDPGEACPAC  130
            + +       +  +D       D  V  P R+ + +   +++ PR E+ +L ++  CP C
Sbjct  71   NRL-------QKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  131  GGPLRLVGEDVTEILDFIAAKLKVVETARLKKSCRHCETMVQPEAPSRPVPRGMAGPGLL  190
            GG+L  +GED +E L+++ + ++V+ T R K +C +C+T+VQ+ APSRP+ RG+AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  191  AHILVSKFDDHIPLYRQNEIFSRQGVDIPRSTLIDWCGQAVAVLRPLTDLIRQDVVKADL  250
            A++L SK+ +H PLY Q+EI++RQGV+++RS L +W +    +L PL + ++  V+  + 
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  251  LHADDTPIQVLDPRLRQAGKPRGVKEGRIWTYLRDPRPWGGSDPPAVAYWFSPDRKGINP  310
            LHADDTP+QVL P        +  K GR+W+Y+R+ R  G++ +PAV + +SPDRK+I+P
Sbjct  244  LHADDTPVQVLLP------GNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHP  297

Query  311  QTHLAQFRGILQADAYAGFRDLYKPDATGTVHVREAACWAHLRRAFHDVWKGSDSTIARE  370
            QTHLA F G+LQADAYAGF +LY+ ++     + EAACWAH RR +HDV     S+++ E
Sbjct  298  QTHLACFSGVLQADAYAGFNELYRNGG-----ITEAACWAHARRKIHDVHVRIPSALTEE  352

Query  371  ALEQIGELYDIERQLTGSPAPYRLAVRQEKSRPRVTAFHAW  411
            ALEQIG+LY IE ++ G PA  RLA RQ K++P + ++++W
Sbjct  353  ALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESW  393


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  466  RKNYLFAGSDAGGDNIADAMTLIESAKLSGINPHDYLADVLARINEHKINRLHELLPW  523
            + + LF GS+ GG+  A   +LI + KL++++P+ YL +VL+ I +  +NR+ ELLPW
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

360) APA12_21630 in NC_017108


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 263/401 (66%), Gaps = 21/401 (5%)

Query  14   ILREMIVSLQTEVARLSASARAYEALVQSLKIRIARLQKQKFGASSEKIDREIEQLELLL  73
            +L++ +   ++ +  L       E  ++ L+ ++ +L++ +FG+ SEK+ R I Q+E  L
Sbjct  11   LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADL  70

Query  74   EDVKiaiaaaDPSPDIREHDDSDGVVSSPRRRGKPK--VSDTTPR-ERIVLDPGEACPAC  130
            + +       +  +D       D  V  P R+ + +   +++ PR E+ +L ++  CP C
Sbjct  71   NRL-------QKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  131  GGPLRLVGEDVTEILDFIAAKLKVVETARLKKSCRHCETMVQPEAPSRPVPRGMAGPGLL  190
            GG+L  +GED +E L+++ + ++V+ T R K +C +C+T+VQ+ APSRP+ RG+AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  191  AHILVSKFDDHIPLYRQNEIFSRQGVDIPRSTLIDWCGQAVAVLRPLTDLIRQDVVKADL  250
            A++L SK+ +H PLY Q+EI++RQGV+++RS L +W +    +L PL + ++  V+  + 
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  251  LHADDTPIQVLDPRLRQAGKPRGVKEGRIWTYLRDPRPWGGSDPPAVAYWFSPDRKGINP  310
            LHADDTP+QVL P        +  K GR+W+Y+R+ R  G++ +PAV + +SPDRK+I+P
Sbjct  244  LHADDTPVQVLLP------GNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHP  297

Query  311  QTHLAQFRGILQADAYAGFRDLYKPDATGTVHVREAACWAHLRRAFHDVWKGSDSTIARE  370
            QTHLA F G+LQADAYAGF +LY+ ++     + EAACWAH RR +HDV     S+++ E
Sbjct  298  QTHLACFSGVLQADAYAGFNELYRNGG-----ITEAACWAHARRKIHDVHVRIPSALTEE  352

Query  371  ALEQIGELYDIERQLTGSPAPYRLAVRQEKSRPRVTAFHAW  411
            ALEQIG+LY IE ++ G PA  RLA RQ K++P + ++++W
Sbjct  353  ALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESW  393


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  466  RKNYLFAGSDAGGDNIADAMTLIESAKLSGINPHDYLADVLARINEHKINRLHELLPW  523
            + + LF GS+ GG+  A   +LI + KL++++P+ YL +VL+ I +  +NR+ ELLPW
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

361) APA22_01780 in NC_017125


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 263/401 (66%), Gaps = 21/401 (5%)

Query  14   ILREMIVSLQTEVARLSASARAYEALVQSLKIRIARLQKQKFGASSEKIDREIEQLELLL  73
            +L++ +   ++ +  L       E  ++ L+ ++ +L++ +FG+ SEK+ R I Q+E  L
Sbjct  11   LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADL  70

Query  74   EDVKiaiaaaDPSPDIREHDDSDGVVSSPRRRGKPK--VSDTTPR-ERIVLDPGEACPAC  130
            + +       +  +D       D  V  P R+ + +   +++ PR E+ +L ++  CP C
Sbjct  71   NRL-------QKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  131  GGPLRLVGEDVTEILDFIAAKLKVVETARLKKSCRHCETMVQPEAPSRPVPRGMAGPGLL  190
            GG+L  +GED +E L+++ + ++V+ T R K +C +C+T+VQ+ APSRP+ RG+AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  191  AHILVSKFDDHIPLYRQNEIFSRQGVDIPRSTLIDWCGQAVAVLRPLTDLIRQDVVKADL  250
            A++L SK+ +H PLY Q+EI++RQGV+++RS L +W +    +L PL + ++  V+  + 
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  251  LHADDTPIQVLDPRLRQAGKPRGVKEGRIWTYLRDPRPWGGSDPPAVAYWFSPDRKGINP  310
            LHADDTP+QVL P        +  K GR+W+Y+R+ R  G++ +PAV + +SPDRK+I+P
Sbjct  244  LHADDTPVQVLLP------GNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHP  297

Query  311  QTHLAQFRGILQADAYAGFRDLYKPDATGTVHVREAACWAHLRRAFHDVWKGSDSTIARE  370
            QTHLA F G+LQADAYAGF +LY+ ++     + EAACWAH RR +HDV     S+++ E
Sbjct  298  QTHLACFSGVLQADAYAGFNELYRNGG-----ITEAACWAHARRKIHDVHVRIPSALTEE  352

Query  371  ALEQIGELYDIERQLTGSPAPYRLAVRQEKSRPRVTAFHAW  411
            ALEQIG+LY IE ++ G PA  RLA RQ K++P + ++++W
Sbjct  353  ALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESW  393


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  466  RKNYLFAGSDAGGDNIADAMTLIESAKLSGINPHDYLADVLARINEHKINRLHELLPW  523
            + + LF GS+ GG+  A   +LI + KL++++P+ YL +VL+ I +  +NR+ ELLPW
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

362) APA22_08390 in NC_017125


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 263/401 (66%), Gaps = 21/401 (5%)

Query  14   ILREMIVSLQTEVARLSASARAYEALVQSLKIRIARLQKQKFGASSEKIDREIEQLELLL  73
            +L++ +   ++ +  L       E  ++ L+ ++ +L++ +FG+ SEK+ R I Q+E  L
Sbjct  11   LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADL  70

Query  74   EDVKiaiaaaDPSPDIREHDDSDGVVSSPRRRGKPK--VSDTTPR-ERIVLDPGEACPAC  130
            + +       +  +D       D  V  P R+ + +   +++ PR E+ +L ++  CP C
Sbjct  71   NRL-------QKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  131  GGPLRLVGEDVTEILDFIAAKLKVVETARLKKSCRHCETMVQPEAPSRPVPRGMAGPGLL  190
            GG+L  +GED +E L+++ + ++V+ T R K +C +C+T+VQ+ APSRP+ RG+AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  191  AHILVSKFDDHIPLYRQNEIFSRQGVDIPRSTLIDWCGQAVAVLRPLTDLIRQDVVKADL  250
            A++L SK+ +H PLY Q+EI++RQGV+++RS L +W +    +L PL + ++  V+  + 
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  251  LHADDTPIQVLDPRLRQAGKPRGVKEGRIWTYLRDPRPWGGSDPPAVAYWFSPDRKGINP  310
            LHADDTP+QVL P        +  K GR+W+Y+R+ R  G++ +PAV + +SPDRK+I+P
Sbjct  244  LHADDTPVQVLLP------GNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHP  297

Query  311  QTHLAQFRGILQADAYAGFRDLYKPDATGTVHVREAACWAHLRRAFHDVWKGSDSTIARE  370
            QTHLA F G+LQADAYAGF +LY+ ++     + EAACWAH RR +HDV     S+++ E
Sbjct  298  QTHLACFSGVLQADAYAGFNELYRNGG-----ITEAACWAHARRKIHDVHVRIPSALTEE  352

Query  371  ALEQIGELYDIERQLTGSPAPYRLAVRQEKSRPRVTAFHAW  411
            ALEQIG+LY IE ++ G PA  RLA RQ K++P + ++++W
Sbjct  353  ALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESW  393


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  466  RKNYLFAGSDAGGDNIADAMTLIESAKLSGINPHDYLADVLARINEHKINRLHELLPW  523
            + + LF GS+ GG+  A   +LI + KL++++P+ YL +VL+ I +  +NR+ ELLPW
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

363) APA22_17910 in NC_017125


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 263/401 (66%), Gaps = 21/401 (5%)

Query  14   ILREMIVSLQTEVARLSASARAYEALVQSLKIRIARLQKQKFGASSEKIDREIEQLELLL  73
            +L++ +   ++ +  L       E  ++ L+ ++ +L++ +FG+ SEK+ R I Q+E  L
Sbjct  11   LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADL  70

Query  74   EDVKiaiaaaDPSPDIREHDDSDGVVSSPRRRGKPK--VSDTTPR-ERIVLDPGEACPAC  130
            + +       +  +D       D  V  P R+ + +   +++ PR E+ +L ++  CP C
Sbjct  71   NRL-------QKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  131  GGPLRLVGEDVTEILDFIAAKLKVVETARLKKSCRHCETMVQPEAPSRPVPRGMAGPGLL  190
            GG+L  +GED +E L+++ + ++V+ T R K +C +C+T+VQ+ APSRP+ RG+AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  191  AHILVSKFDDHIPLYRQNEIFSRQGVDIPRSTLIDWCGQAVAVLRPLTDLIRQDVVKADL  250
            A++L SK+ +H PLY Q+EI++RQGV+++RS L +W +    +L PL + ++  V+  + 
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  251  LHADDTPIQVLDPRLRQAGKPRGVKEGRIWTYLRDPRPWGGSDPPAVAYWFSPDRKGINP  310
            LHADDTP+QVL P        +  K GR+W+Y+R+ R  G++ +PAV + +SPDRK+I+P
Sbjct  244  LHADDTPVQVLLP------GNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHP  297

Query  311  QTHLAQFRGILQADAYAGFRDLYKPDATGTVHVREAACWAHLRRAFHDVWKGSDSTIARE  370
            QTHLA F G+LQADAYAGF +LY+ ++     + EAACWAH RR +HDV     S+++ E
Sbjct  298  QTHLACFSGVLQADAYAGFNELYRNGG-----ITEAACWAHARRKIHDVHVRIPSALTEE  352

Query  371  ALEQIGELYDIERQLTGSPAPYRLAVRQEKSRPRVTAFHAW  411
            ALEQIG+LY IE ++ G PA  RLA RQ K++P + ++++W
Sbjct  353  ALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESW  393


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  466  RKNYLFAGSDAGGDNIADAMTLIESAKLSGINPHDYLADVLARINEHKINRLHELLPW  523
            + + LF GS+ GG+  A   +LI + KL++++P+ YL +VL+ I +  +NR+ ELLPW
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

364) APA22_18220 in NC_017125


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 263/401 (66%), Gaps = 21/401 (5%)

Query  14   ILREMIVSLQTEVARLSASARAYEALVQSLKIRIARLQKQKFGASSEKIDREIEQLELLL  73
            +L++ +   ++ +  L       E  ++ L+ ++ +L++ +FG+ SEK+ R I Q+E  L
Sbjct  11   LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADL  70

Query  74   EDVKiaiaaaDPSPDIREHDDSDGVVSSPRRRGKPK--VSDTTPR-ERIVLDPGEACPAC  130
            + +       +  +D       D  V  P R+ + +   +++ PR E+ +L ++  CP C
Sbjct  71   NRL-------QKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  131  GGPLRLVGEDVTEILDFIAAKLKVVETARLKKSCRHCETMVQPEAPSRPVPRGMAGPGLL  190
            GG+L  +GED +E L+++ + ++V+ T R K +C +C+T+VQ+ APSRP+ RG+AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  191  AHILVSKFDDHIPLYRQNEIFSRQGVDIPRSTLIDWCGQAVAVLRPLTDLIRQDVVKADL  250
            A++L SK+ +H PLY Q+EI++RQGV+++RS L +W +    +L PL + ++  V+  + 
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  251  LHADDTPIQVLDPRLRQAGKPRGVKEGRIWTYLRDPRPWGGSDPPAVAYWFSPDRKGINP  310
            LHADDTP+QVL P        +  K GR+W+Y+R+ R  G++ +PAV + +SPDRK+I+P
Sbjct  244  LHADDTPVQVLLP------GNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHP  297

Query  311  QTHLAQFRGILQADAYAGFRDLYKPDATGTVHVREAACWAHLRRAFHDVWKGSDSTIARE  370
            QTHLA F G+LQADAYAGF +LY+ ++     + EAACWAH RR +HDV     S+++ E
Sbjct  298  QTHLACFSGVLQADAYAGFNELYRNGG-----ITEAACWAHARRKIHDVHVRIPSALTEE  352

Query  371  ALEQIGELYDIERQLTGSPAPYRLAVRQEKSRPRVTAFHAW  411
            ALEQIG+LY IE ++ G PA  RLA RQ K++P + ++++W
Sbjct  353  ALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESW  393


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  466  RKNYLFAGSDAGGDNIADAMTLIESAKLSGINPHDYLADVLARINEHKINRLHELLPW  523
            + + LF GS+ GG+  A   +LI + KL++++P+ YL +VL+ I +  +NR+ ELLPW
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

365) APA22_21630 in NC_017125


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 263/401 (66%), Gaps = 21/401 (5%)

Query  14   ILREMIVSLQTEVARLSASARAYEALVQSLKIRIARLQKQKFGASSEKIDREIEQLELLL  73
            +L++ +   ++ +  L       E  ++ L+ ++ +L++ +FG+ SEK+ R I Q+E  L
Sbjct  11   LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADL  70

Query  74   EDVKiaiaaaDPSPDIREHDDSDGVVSSPRRRGKPK--VSDTTPR-ERIVLDPGEACPAC  130
            + +       +  +D       D  V  P R+ + +   +++ PR E+ +L ++  CP C
Sbjct  71   NRL-------QKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  131  GGPLRLVGEDVTEILDFIAAKLKVVETARLKKSCRHCETMVQPEAPSRPVPRGMAGPGLL  190
            GG+L  +GED +E L+++ + ++V+ T R K +C +C+T+VQ+ APSRP+ RG+AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  191  AHILVSKFDDHIPLYRQNEIFSRQGVDIPRSTLIDWCGQAVAVLRPLTDLIRQDVVKADL  250
            A++L SK+ +H PLY Q+EI++RQGV+++RS L +W +    +L PL + ++  V+  + 
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  251  LHADDTPIQVLDPRLRQAGKPRGVKEGRIWTYLRDPRPWGGSDPPAVAYWFSPDRKGINP  310
            LHADDTP+QVL P        +  K GR+W+Y+R+ R  G++ +PAV + +SPDRK+I+P
Sbjct  244  LHADDTPVQVLLP------GNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHP  297

Query  311  QTHLAQFRGILQADAYAGFRDLYKPDATGTVHVREAACWAHLRRAFHDVWKGSDSTIARE  370
            QTHLA F G+LQADAYAGF +LY+ ++     + EAACWAH RR +HDV     S+++ E
Sbjct  298  QTHLACFSGVLQADAYAGFNELYRNGG-----ITEAACWAHARRKIHDVHVRIPSALTEE  352

Query  371  ALEQIGELYDIERQLTGSPAPYRLAVRQEKSRPRVTAFHAW  411
            ALEQIG+LY IE ++ G PA  RLA RQ K++P + ++++W
Sbjct  353  ALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESW  393


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  466  RKNYLFAGSDAGGDNIADAMTLIESAKLSGINPHDYLADVLARINEHKINRLHELLPW  523
            + + LF GS+ GG+  A   +LI + KL++++P+ YL +VL+ I +  +NR+ ELLPW
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

366) APA26_01780 in NC_017146


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 263/401 (66%), Gaps = 21/401 (5%)

Query  14   ILREMIVSLQTEVARLSASARAYEALVQSLKIRIARLQKQKFGASSEKIDREIEQLELLL  73
            +L++ +   ++ +  L       E  ++ L+ ++ +L++ +FG+ SEK+ R I Q+E  L
Sbjct  11   LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADL  70

Query  74   EDVKiaiaaaDPSPDIREHDDSDGVVSSPRRRGKPK--VSDTTPR-ERIVLDPGEACPAC  130
            + +       +  +D       D  V  P R+ + +   +++ PR E+ +L ++  CP C
Sbjct  71   NRL-------QKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  131  GGPLRLVGEDVTEILDFIAAKLKVVETARLKKSCRHCETMVQPEAPSRPVPRGMAGPGLL  190
            GG+L  +GED +E L+++ + ++V+ T R K +C +C+T+VQ+ APSRP+ RG+AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  191  AHILVSKFDDHIPLYRQNEIFSRQGVDIPRSTLIDWCGQAVAVLRPLTDLIRQDVVKADL  250
            A++L SK+ +H PLY Q+EI++RQGV+++RS L +W +    +L PL + ++  V+  + 
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  251  LHADDTPIQVLDPRLRQAGKPRGVKEGRIWTYLRDPRPWGGSDPPAVAYWFSPDRKGINP  310
            LHADDTP+QVL P        +  K GR+W+Y+R+ R  G++ +PAV + +SPDRK+I+P
Sbjct  244  LHADDTPVQVLLP------GNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHP  297

Query  311  QTHLAQFRGILQADAYAGFRDLYKPDATGTVHVREAACWAHLRRAFHDVWKGSDSTIARE  370
            QTHLA F G+LQADAYAGF +LY+ ++     + EAACWAH RR +HDV     S+++ E
Sbjct  298  QTHLACFSGVLQADAYAGFNELYRNGG-----ITEAACWAHARRKIHDVHVRIPSALTEE  352

Query  371  ALEQIGELYDIERQLTGSPAPYRLAVRQEKSRPRVTAFHAW  411
            ALEQIG+LY IE ++ G PA  RLA RQ K++P + ++++W
Sbjct  353  ALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESW  393


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  466  RKNYLFAGSDAGGDNIADAMTLIESAKLSGINPHDYLADVLARINEHKINRLHELLPW  523
            + + LF GS+ GG+  A   +LI + KL++++P+ YL +VL+ I +  +NR+ ELLPW
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

367) APA26_08390 in NC_017146


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 263/401 (66%), Gaps = 21/401 (5%)

Query  14   ILREMIVSLQTEVARLSASARAYEALVQSLKIRIARLQKQKFGASSEKIDREIEQLELLL  73
            +L++ +   ++ +  L       E  ++ L+ ++ +L++ +FG+ SEK+ R I Q+E  L
Sbjct  11   LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADL  70

Query  74   EDVKiaiaaaDPSPDIREHDDSDGVVSSPRRRGKPK--VSDTTPR-ERIVLDPGEACPAC  130
            + +       +  +D       D  V  P R+ + +   +++ PR E+ +L ++  CP C
Sbjct  71   NRL-------QKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  131  GGPLRLVGEDVTEILDFIAAKLKVVETARLKKSCRHCETMVQPEAPSRPVPRGMAGPGLL  190
            GG+L  +GED +E L+++ + ++V+ T R K +C +C+T+VQ+ APSRP+ RG+AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  191  AHILVSKFDDHIPLYRQNEIFSRQGVDIPRSTLIDWCGQAVAVLRPLTDLIRQDVVKADL  250
            A++L SK+ +H PLY Q+EI++RQGV+++RS L +W +    +L PL + ++  V+  + 
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  251  LHADDTPIQVLDPRLRQAGKPRGVKEGRIWTYLRDPRPWGGSDPPAVAYWFSPDRKGINP  310
            LHADDTP+QVL P        +  K GR+W+Y+R+ R  G++ +PAV + +SPDRK+I+P
Sbjct  244  LHADDTPVQVLLP------GNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHP  297

Query  311  QTHLAQFRGILQADAYAGFRDLYKPDATGTVHVREAACWAHLRRAFHDVWKGSDSTIARE  370
            QTHLA F G+LQADAYAGF +LY+ ++     + EAACWAH RR +HDV     S+++ E
Sbjct  298  QTHLACFSGVLQADAYAGFNELYRNGG-----ITEAACWAHARRKIHDVHVRIPSALTEE  352

Query  371  ALEQIGELYDIERQLTGSPAPYRLAVRQEKSRPRVTAFHAW  411
            ALEQIG+LY IE ++ G PA  RLA RQ K++P + ++++W
Sbjct  353  ALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESW  393


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  466  RKNYLFAGSDAGGDNIADAMTLIESAKLSGINPHDYLADVLARINEHKINRLHELLPW  523
            + + LF GS+ GG+  A   +LI + KL++++P+ YL +VL+ I +  +NR+ ELLPW
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

368) APA26_17910 in NC_017146


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 263/401 (66%), Gaps = 21/401 (5%)

Query  14   ILREMIVSLQTEVARLSASARAYEALVQSLKIRIARLQKQKFGASSEKIDREIEQLELLL  73
            +L++ +   ++ +  L       E  ++ L+ ++ +L++ +FG+ SEK+ R I Q+E  L
Sbjct  11   LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADL  70

Query  74   EDVKiaiaaaDPSPDIREHDDSDGVVSSPRRRGKPK--VSDTTPR-ERIVLDPGEACPAC  130
            + +       +  +D       D  V  P R+ + +   +++ PR E+ +L ++  CP C
Sbjct  71   NRL-------QKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  131  GGPLRLVGEDVTEILDFIAAKLKVVETARLKKSCRHCETMVQPEAPSRPVPRGMAGPGLL  190
            GG+L  +GED +E L+++ + ++V+ T R K +C +C+T+VQ+ APSRP+ RG+AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  191  AHILVSKFDDHIPLYRQNEIFSRQGVDIPRSTLIDWCGQAVAVLRPLTDLIRQDVVKADL  250
            A++L SK+ +H PLY Q+EI++RQGV+++RS L +W +    +L PL + ++  V+  + 
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  251  LHADDTPIQVLDPRLRQAGKPRGVKEGRIWTYLRDPRPWGGSDPPAVAYWFSPDRKGINP  310
            LHADDTP+QVL P        +  K GR+W+Y+R+ R  G++ +PAV + +SPDRK+I+P
Sbjct  244  LHADDTPVQVLLP------GNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHP  297

Query  311  QTHLAQFRGILQADAYAGFRDLYKPDATGTVHVREAACWAHLRRAFHDVWKGSDSTIARE  370
            QTHLA F G+LQADAYAGF +LY+ ++     + EAACWAH RR +HDV     S+++ E
Sbjct  298  QTHLACFSGVLQADAYAGFNELYRNGG-----ITEAACWAHARRKIHDVHVRIPSALTEE  352

Query  371  ALEQIGELYDIERQLTGSPAPYRLAVRQEKSRPRVTAFHAW  411
            ALEQIG+LY IE ++ G PA  RLA RQ K++P + ++++W
Sbjct  353  ALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESW  393


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  466  RKNYLFAGSDAGGDNIADAMTLIESAKLSGINPHDYLADVLARINEHKINRLHELLPW  523
            + + LF GS+ GG+  A   +LI + KL++++P+ YL +VL+ I +  +NR+ ELLPW
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

369) APA26_18220 in NC_017146


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 263/401 (66%), Gaps = 21/401 (5%)

Query  14   ILREMIVSLQTEVARLSASARAYEALVQSLKIRIARLQKQKFGASSEKIDREIEQLELLL  73
            +L++ +   ++ +  L       E  ++ L+ ++ +L++ +FG+ SEK+ R I Q+E  L
Sbjct  11   LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADL  70

Query  74   EDVKiaiaaaDPSPDIREHDDSDGVVSSPRRRGKPK--VSDTTPR-ERIVLDPGEACPAC  130
            + +       +  +D       D  V  P R+ + +   +++ PR E+ +L ++  CP C
Sbjct  71   NRL-------QKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  131  GGPLRLVGEDVTEILDFIAAKLKVVETARLKKSCRHCETMVQPEAPSRPVPRGMAGPGLL  190
            GG+L  +GED +E L+++ + ++V+ T R K +C +C+T+VQ+ APSRP+ RG+AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  191  AHILVSKFDDHIPLYRQNEIFSRQGVDIPRSTLIDWCGQAVAVLRPLTDLIRQDVVKADL  250
            A++L SK+ +H PLY Q+EI++RQGV+++RS L +W +    +L PL + ++  V+  + 
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  251  LHADDTPIQVLDPRLRQAGKPRGVKEGRIWTYLRDPRPWGGSDPPAVAYWFSPDRKGINP  310
            LHADDTP+QVL P        +  K GR+W+Y+R+ R  G++ +PAV + +SPDRK+I+P
Sbjct  244  LHADDTPVQVLLP------GNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHP  297

Query  311  QTHLAQFRGILQADAYAGFRDLYKPDATGTVHVREAACWAHLRRAFHDVWKGSDSTIARE  370
            QTHLA F G+LQADAYAGF +LY+ ++     + EAACWAH RR +HDV     S+++ E
Sbjct  298  QTHLACFSGVLQADAYAGFNELYRNGG-----ITEAACWAHARRKIHDVHVRIPSALTEE  352

Query  371  ALEQIGELYDIERQLTGSPAPYRLAVRQEKSRPRVTAFHAW  411
            ALEQIG+LY IE ++ G PA  RLA RQ K++P + ++++W
Sbjct  353  ALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESW  393


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  466  RKNYLFAGSDAGGDNIADAMTLIESAKLSGINPHDYLADVLARINEHKINRLHELLPW  523
            + + LF GS+ GG+  A   +LI + KL++++P+ YL +VL+ I +  +NR+ ELLPW
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

370) APA26_21630 in NC_017146


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 263/401 (66%), Gaps = 21/401 (5%)

Query  14   ILREMIVSLQTEVARLSASARAYEALVQSLKIRIARLQKQKFGASSEKIDREIEQLELLL  73
            +L++ +   ++ +  L       E  ++ L+ ++ +L++ +FG+ SEK+ R I Q+E  L
Sbjct  11   LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADL  70

Query  74   EDVKiaiaaaDPSPDIREHDDSDGVVSSPRRRGKPK--VSDTTPR-ERIVLDPGEACPAC  130
            + +       +  +D       D  V  P R+ + +   +++ PR E+ +L ++  CP C
Sbjct  71   NRL-------QKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  131  GGPLRLVGEDVTEILDFIAAKLKVVETARLKKSCRHCETMVQPEAPSRPVPRGMAGPGLL  190
            GG+L  +GED +E L+++ + ++V+ T R K +C +C+T+VQ+ APSRP+ RG+AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  191  AHILVSKFDDHIPLYRQNEIFSRQGVDIPRSTLIDWCGQAVAVLRPLTDLIRQDVVKADL  250
            A++L SK+ +H PLY Q+EI++RQGV+++RS L +W +    +L PL + ++  V+  + 
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  251  LHADDTPIQVLDPRLRQAGKPRGVKEGRIWTYLRDPRPWGGSDPPAVAYWFSPDRKGINP  310
            LHADDTP+QVL P        +  K GR+W+Y+R+ R  G++ +PAV + +SPDRK+I+P
Sbjct  244  LHADDTPVQVLLP------GNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHP  297

Query  311  QTHLAQFRGILQADAYAGFRDLYKPDATGTVHVREAACWAHLRRAFHDVWKGSDSTIARE  370
            QTHLA F G+LQADAYAGF +LY+ ++     + EAACWAH RR +HDV     S+++ E
Sbjct  298  QTHLACFSGVLQADAYAGFNELYRNGG-----ITEAACWAHARRKIHDVHVRIPSALTEE  352

Query  371  ALEQIGELYDIERQLTGSPAPYRLAVRQEKSRPRVTAFHAW  411
            ALEQIG+LY IE ++ G PA  RLA RQ K++P + ++++W
Sbjct  353  ALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESW  393


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  466  RKNYLFAGSDAGGDNIADAMTLIESAKLSGINPHDYLADVLARINEHKINRLHELLPW  523
            + + LF GS+ GG+  A   +LI + KL++++P+ YL +VL+ I +  +NR+ ELLPW
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

371) APA32_01780 in NC_017111


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 263/401 (66%), Gaps = 21/401 (5%)

Query  14   ILREMIVSLQTEVARLSASARAYEALVQSLKIRIARLQKQKFGASSEKIDREIEQLELLL  73
            +L++ +   ++ +  L       E  ++ L+ ++ +L++ +FG+ SEK+ R I Q+E  L
Sbjct  11   LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADL  70

Query  74   EDVKiaiaaaDPSPDIREHDDSDGVVSSPRRRGKPK--VSDTTPR-ERIVLDPGEACPAC  130
            + +       +  +D       D  V  P R+ + +   +++ PR E+ +L ++  CP C
Sbjct  71   NRL-------QKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  131  GGPLRLVGEDVTEILDFIAAKLKVVETARLKKSCRHCETMVQPEAPSRPVPRGMAGPGLL  190
            GG+L  +GED +E L+++ + ++V+ T R K +C +C+T+VQ+ APSRP+ RG+AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  191  AHILVSKFDDHIPLYRQNEIFSRQGVDIPRSTLIDWCGQAVAVLRPLTDLIRQDVVKADL  250
            A++L SK+ +H PLY Q+EI++RQGV+++RS L +W +    +L PL + ++  V+  + 
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  251  LHADDTPIQVLDPRLRQAGKPRGVKEGRIWTYLRDPRPWGGSDPPAVAYWFSPDRKGINP  310
            LHADDTP+QVL P        +  K GR+W+Y+R+ R  G++ +PAV + +SPDRK+I+P
Sbjct  244  LHADDTPVQVLLP------GNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHP  297

Query  311  QTHLAQFRGILQADAYAGFRDLYKPDATGTVHVREAACWAHLRRAFHDVWKGSDSTIARE  370
            QTHLA F G+LQADAYAGF +LY+ ++     + EAACWAH RR +HDV     S+++ E
Sbjct  298  QTHLACFSGVLQADAYAGFNELYRNGG-----ITEAACWAHARRKIHDVHVRIPSALTEE  352

Query  371  ALEQIGELYDIERQLTGSPAPYRLAVRQEKSRPRVTAFHAW  411
            ALEQIG+LY IE ++ G PA  RLA RQ K++P + ++++W
Sbjct  353  ALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESW  393


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  466  RKNYLFAGSDAGGDNIADAMTLIESAKLSGINPHDYLADVLARINEHKINRLHELLPW  523
            + + LF GS+ GG+  A   +LI + KL++++P+ YL +VL+ I +  +NR+ ELLPW
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

372) APA32_08390 in NC_017111


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 263/401 (66%), Gaps = 21/401 (5%)

Query  14   ILREMIVSLQTEVARLSASARAYEALVQSLKIRIARLQKQKFGASSEKIDREIEQLELLL  73
            +L++ +   ++ +  L       E  ++ L+ ++ +L++ +FG+ SEK+ R I Q+E  L
Sbjct  11   LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADL  70

Query  74   EDVKiaiaaaDPSPDIREHDDSDGVVSSPRRRGKPK--VSDTTPR-ERIVLDPGEACPAC  130
            + +       +  +D       D  V  P R+ + +   +++ PR E+ +L ++  CP C
Sbjct  71   NRL-------QKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  131  GGPLRLVGEDVTEILDFIAAKLKVVETARLKKSCRHCETMVQPEAPSRPVPRGMAGPGLL  190
            GG+L  +GED +E L+++ + ++V+ T R K +C +C+T+VQ+ APSRP+ RG+AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  191  AHILVSKFDDHIPLYRQNEIFSRQGVDIPRSTLIDWCGQAVAVLRPLTDLIRQDVVKADL  250
            A++L SK+ +H PLY Q+EI++RQGV+++RS L +W +    +L PL + ++  V+  + 
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  251  LHADDTPIQVLDPRLRQAGKPRGVKEGRIWTYLRDPRPWGGSDPPAVAYWFSPDRKGINP  310
            LHADDTP+QVL P        +  K GR+W+Y+R+ R  G++ +PAV + +SPDRK+I+P
Sbjct  244  LHADDTPVQVLLP------GNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHP  297

Query  311  QTHLAQFRGILQADAYAGFRDLYKPDATGTVHVREAACWAHLRRAFHDVWKGSDSTIARE  370
            QTHLA F G+LQADAYAGF +LY+ ++     + EAACWAH RR +HDV     S+++ E
Sbjct  298  QTHLACFSGVLQADAYAGFNELYRNGG-----ITEAACWAHARRKIHDVHVRIPSALTEE  352

Query  371  ALEQIGELYDIERQLTGSPAPYRLAVRQEKSRPRVTAFHAW  411
            ALEQIG+LY IE ++ G PA  RLA RQ K++P + ++++W
Sbjct  353  ALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESW  393


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  466  RKNYLFAGSDAGGDNIADAMTLIESAKLSGINPHDYLADVLARINEHKINRLHELLPW  523
            + + LF GS+ GG+  A   +LI + KL++++P+ YL +VL+ I +  +NR+ ELLPW
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

373) APA32_17910 in NC_017111


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 263/401 (66%), Gaps = 21/401 (5%)

Query  14   ILREMIVSLQTEVARLSASARAYEALVQSLKIRIARLQKQKFGASSEKIDREIEQLELLL  73
            +L++ +   ++ +  L       E  ++ L+ ++ +L++ +FG+ SEK+ R I Q+E  L
Sbjct  11   LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADL  70

Query  74   EDVKiaiaaaDPSPDIREHDDSDGVVSSPRRRGKPK--VSDTTPR-ERIVLDPGEACPAC  130
            + +       +  +D       D  V  P R+ + +   +++ PR E+ +L ++  CP C
Sbjct  71   NRL-------QKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  131  GGPLRLVGEDVTEILDFIAAKLKVVETARLKKSCRHCETMVQPEAPSRPVPRGMAGPGLL  190
            GG+L  +GED +E L+++ + ++V+ T R K +C +C+T+VQ+ APSRP+ RG+AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  191  AHILVSKFDDHIPLYRQNEIFSRQGVDIPRSTLIDWCGQAVAVLRPLTDLIRQDVVKADL  250
            A++L SK+ +H PLY Q+EI++RQGV+++RS L +W +    +L PL + ++  V+  + 
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  251  LHADDTPIQVLDPRLRQAGKPRGVKEGRIWTYLRDPRPWGGSDPPAVAYWFSPDRKGINP  310
            LHADDTP+QVL P        +  K GR+W+Y+R+ R  G++ +PAV + +SPDRK+I+P
Sbjct  244  LHADDTPVQVLLP------GNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHP  297

Query  311  QTHLAQFRGILQADAYAGFRDLYKPDATGTVHVREAACWAHLRRAFHDVWKGSDSTIARE  370
            QTHLA F G+LQADAYAGF +LY+ ++     + EAACWAH RR +HDV     S+++ E
Sbjct  298  QTHLACFSGVLQADAYAGFNELYRNGG-----ITEAACWAHARRKIHDVHVRIPSALTEE  352

Query  371  ALEQIGELYDIERQLTGSPAPYRLAVRQEKSRPRVTAFHAW  411
            ALEQIG+LY IE ++ G PA  RLA RQ K++P + ++++W
Sbjct  353  ALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESW  393


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  466  RKNYLFAGSDAGGDNIADAMTLIESAKLSGINPHDYLADVLARINEHKINRLHELLPW  523
            + + LF GS+ GG+  A   +LI + KL++++P+ YL +VL+ I +  +NR+ ELLPW
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

374) APA32_18220 in NC_017111


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 263/401 (66%), Gaps = 21/401 (5%)

Query  14   ILREMIVSLQTEVARLSASARAYEALVQSLKIRIARLQKQKFGASSEKIDREIEQLELLL  73
            +L++ +   ++ +  L       E  ++ L+ ++ +L++ +FG+ SEK+ R I Q+E  L
Sbjct  11   LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADL  70

Query  74   EDVKiaiaaaDPSPDIREHDDSDGVVSSPRRRGKPK--VSDTTPR-ERIVLDPGEACPAC  130
            + +       +  +D       D  V  P R+ + +   +++ PR E+ +L ++  CP C
Sbjct  71   NRL-------QKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  131  GGPLRLVGEDVTEILDFIAAKLKVVETARLKKSCRHCETMVQPEAPSRPVPRGMAGPGLL  190
            GG+L  +GED +E L+++ + ++V+ T R K +C +C+T+VQ+ APSRP+ RG+AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  191  AHILVSKFDDHIPLYRQNEIFSRQGVDIPRSTLIDWCGQAVAVLRPLTDLIRQDVVKADL  250
            A++L SK+ +H PLY Q+EI++RQGV+++RS L +W +    +L PL + ++  V+  + 
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  251  LHADDTPIQVLDPRLRQAGKPRGVKEGRIWTYLRDPRPWGGSDPPAVAYWFSPDRKGINP  310
            LHADDTP+QVL P        +  K GR+W+Y+R+ R  G++ +PAV + +SPDRK+I+P
Sbjct  244  LHADDTPVQVLLP------GNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHP  297

Query  311  QTHLAQFRGILQADAYAGFRDLYKPDATGTVHVREAACWAHLRRAFHDVWKGSDSTIARE  370
            QTHLA F G+LQADAYAGF +LY+ ++     + EAACWAH RR +HDV     S+++ E
Sbjct  298  QTHLACFSGVLQADAYAGFNELYRNGG-----ITEAACWAHARRKIHDVHVRIPSALTEE  352

Query  371  ALEQIGELYDIERQLTGSPAPYRLAVRQEKSRPRVTAFHAW  411
            ALEQIG+LY IE ++ G PA  RLA RQ K++P + ++++W
Sbjct  353  ALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESW  393


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  466  RKNYLFAGSDAGGDNIADAMTLIESAKLSGINPHDYLADVLARINEHKINRLHELLPW  523
            + + LF GS+ GG+  A   +LI + KL++++P+ YL +VL+ I +  +NR+ ELLPW
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

375) APA32_21630 in NC_017111


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  259 bits (967),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 162/401 (41%), Positives = 263/401 (66%), Gaps = 21/401 (5%)

Query  14   ILREMIVSLQTEVARLSASARAYEALVQSLKIRIARLQKQKFGASSEKIDREIEQLELLL  73
            +L++ +   ++ +  L       E  ++ L+ ++ +L++ +FG+ SEK+ R I Q+E  L
Sbjct  11   LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADL  70

Query  74   EDVKiaiaaaDPSPDIREHDDSDGVVSSPRRRGKPK--VSDTTPR-ERIVLDPGEACPAC  130
            + +       +  +D       D  V  P R+ + +   +++ PR E+ +L ++  CP C
Sbjct  71   NRL-------QKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  131  GGPLRLVGEDVTEILDFIAAKLKVVETARLKKSCRHCETMVQPEAPSRPVPRGMAGPGLL  190
            GG+L  +GED +E L+++ + ++V+ T R K +C +C+T+VQ+ APSRP+ RG+AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  191  AHILVSKFDDHIPLYRQNEIFSRQGVDIPRSTLIDWCGQAVAVLRPLTDLIRQDVVKADL  250
            A++L SK+ +H PLY Q+EI++RQGV+++RS L +W +    +L PL + ++  V+  + 
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  251  LHADDTPIQVLDPRLRQAGKPRGVKEGRIWTYLRDPRPWGGSDPPAVAYWFSPDRKGINP  310
            LHADDTP+QVL P        +  K GR+W+Y+R+ R  G++ +PAV + +SPDRK+I+P
Sbjct  244  LHADDTPVQVLLP------GNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHP  297

Query  311  QTHLAQFRGILQADAYAGFRDLYKPDATGTVHVREAACWAHLRRAFHDVWKGSDSTIARE  370
            QTHLA F G+LQADAYAGF +LY+ ++     + EAACWAH RR +HDV     S+++ E
Sbjct  298  QTHLACFSGVLQADAYAGFNELYRNGG-----ITEAACWAHARRKIHDVHVRIPSALTEE  352

Query  371  ALEQIGELYDIERQLTGSPAPYRLAVRQEKSRPRVTAFHAW  411
            ALEQIG+LY IE ++ G PA  RLA RQ K++P + ++++W
Sbjct  353  ALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESW  393


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 40/58 (69%), Gaps = 0/58 (0%)

Query  466  RKNYLFAGSDAGGDNIADAMTLIESAKLSGINPHDYLADVLARINEHKINRLHELLPW  523
            + + LF GS+ GG+  A   +LI + KL++++P+ YL +VL+ I +  +NR+ ELLPW
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

376) APA386B_487 in NC_021991


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  255 bits (954),  Expect = 3e-69, Method: Compositional matrix adjust.
 Identities = 161/401 (41%), Positives = 261/401 (66%), Gaps = 21/401 (5%)

Query  14   ILREMIVSLQTEVARLSASARAYEALVQSLKIRIARLQKQKFGASSEKIDREIEQLELLL  73
            +L++ +   ++ +  L       E  ++ L+ ++ +L++ +FG+ SEK+ R I Q+E  L
Sbjct  11   LLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADL  70

Query  74   EDVKiaiaaaDPSPDIREHDDSDGVVSSPRRRGKPK--VSDTTPR-ERIVLDPGEACPTC  130
            + +       +  +D       D  V  P R+ + +   +++ PR E+ +L ++  CP C
Sbjct  71   NRL-------QKESDTLTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNC  123

Query  131  GGRLRLVGEDVTEILDFIAAKLKVVETARLKKSCRHCETMVQPEAPSRPVPRGMAGPGLL  190
            GG L  +GED +E L+++ + ++V+ T R K +C +C+T+VQ+ APSRP+ RG+AGPGLL
Sbjct  124  GGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLL  183

Query  191  AHILVSKFDDHIPLYRQNEIFSRQGVDIPRSTLIDWCGQAVAVLRPLTDLIRQDVVGADL  250
            A++L SK+ +H PLY Q+EI++RQGV+++RS L +W +    +L PL + ++  V+  + 
Sbjct  184  ARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGK  243

Query  251  LHADDTPIQVLDSRLRQAGKPRGVKEGRIWTYLRDPRPWGGSDPPAVAYWFSPDRKGINP  310
            LHADDTP+QVL          +  K GR+W+Y+R+ R  G++ +PAV + +SPDRK+I+P
Sbjct  244  LHADDTPVQVL------LPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHP  297

Query  311  QTHLAQFWGILQADAYAGFRDLYKPDATGTVHVREAACWAHLRRAFHDVWKGSDSTIARE  370
            QTHLA F G+LQADAYAGF +LY+ ++     + EAACWAH RR +HDV     S+++ E
Sbjct  298  QTHLACFSGVLQADAYAGFNELYRNGG-----ITEAACWAHARRKIHDVHVRIPSALTEE  352

Query  371  ALEQIGELYDIERQITGHPAPYRLAVRQEQSRPRVTAFHAW  411
            ALEQIG+LY IE +I G PA  RLA RQ +++P + ++++W
Sbjct  353  ALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESW  393


 Score = 44.5 bits (149),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 24/58 (42%), Positives = 39/58 (68%), Gaps = 0/58 (0%)

Query  466  RKNYLFAGSDTGGDNIADAMTLIESAKLSRLNPHDYLADVLARINEHKINRLHELLPW  523
            + + LF GS+ GG+  A   +LI + KL+ ++P+ YL +VL+ I +  +NR+ ELLPW
Sbjct  397  KMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

377) Bpro_5535 in NC_007950


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  255 bits (951),  Expect = 6e-69, Method: Compositional matrix adjust.
 Identities = 170/410 (42%), Positives = 271/410 (67%), Gaps = 27/410 (6%)

Query  13   LTQDVTQRDVTIKALRQM-------IEKLKIEVSHLKRMRYGRSSEKMDAAQTQFELLSA  65
            L Q +++++  I AL++        I+ L+ ++  L+RM +G  SEK+    +Q E   A
Sbjct  12   LKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQME---A  68

Query  66   ALAPLVTAGAPTDDVKDGATGSNVADLEDERKKRRTKSAKPVQPGLPAHLPREEVIHSac  125
             L  L   +        ++  + V D   +R  R+T++ KP    +P  LPR+E      
Sbjct  69   DLNRLQKES--------DTLTGRVYDPAVQRPLRQTRTRKP----FPESLPRDE--KRLL  114

Query  126  aadckcgacgtgLQQIGQDVSEVLDYEPGSFKVIRHIRPKFACTQCHTVTQAAAPSRPID  185
            +A   C  CG +L  +G+D +E L+   ++F+VIR +R K ACTQC+T+ QA+APSRPI+
Sbjct  115  PAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIE  174

Query  186  RCMAGAGLIAHVMVSKYADHCPLYRQSQISAREDVILAPSTLCGWVGSGGALLTPLAQAV  245
            R +AG+GL+A+V+ SKYA+H PLY QS+I +R++V L+ S L GWV++   LL+PL +A+
Sbjct  175  RGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEAL  234

Query  246  GRYALQAYKVHSDDTPTralgggkgkahlgrLWTYVRDDRSWGDTAHPAVWFQYSEDRRG  305
              Y +   K+H+DDTP + L  G+ K+  GRLW+YVR+DR+ G +  PAVWF YS DR++
Sbjct  235  HGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKS  294

Query  306  EHPRQHLKGFRGVLQVDAFAGYNALFNDGSVVEAACWAHARRKHFEIHKQQELLPGTLAH  365
             HP+ HL  F GVLQ DA+AG+N L+ +G++ EAACWAHARRK  ++H +   +P++L++
Sbjct  295  IHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVR---IPSALTE  351

Query  366  QALQRIAKIYAVESDIRGQSAELRRSQRQLRTRPVLEEMHEWLHAALSQI  415
            +AL++I+++YA+E+DIRG +AE R ++RQ +T+P+L  ++ WL+  +  +
Sbjct  352  EALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score = 64.2 bits (224),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 32/62 (52%), Positives = 48/62 (78%), Gaps = 0/62 (0%)

Query  461  GRKNYLHFGSDGGGHTAAVIYTLIGTAKLCGINPQTYLRYVLERIADHPINRIDELLPWA  520
             + + L FGS+ GG+ +A++Y+LIGT KL +++P++YLR VL  IAD P+NR+ ELLPW 
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

Query  521  VA  522
            +A
Sbjct  456  IA  457

378) B932_3616 in NC_019397


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  252 bits (940),  Expect = 4e-68, Method: Compositional matrix adjust.
 Identities = 155/382 (41%), Positives = 246/382 (65%), Gaps = 2/382 (0%)

Query  28   QTLVRDLAGAVDEGQIEIDRLRQIIREFQRARFGRRAETLEPDQLLLTLEADQpspitpi  87
            ++L++ L   + + + EID+L+  +  ++R  FG R+E +      +  + ++    +  
Sbjct  20   EALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDT  79

Query  88   sttlpdisNTT-PIVKPPHRTALPEHLPRTDVTIVPDVTSCPSCGGALHDAGTTTSEMLD  146
             T     +    P+ +   R ++PE LPR +  ++P    CP+CGG+L   G  T+E L+
Sbjct  80   LTGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLE  139

Query  147  WVPASVRVVRINRPKCACRACGTLHQAPAPERIAEGCLATPGLIAHVLTSRYCDHLPLYR  206
             + ++ RV+R  R K AC  C+T+ QAPAP R  E  +A PGL+A+VLTS+Y +H PLY 
Sbjct  140  LMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYC  199

Query  207  QSQMLARHGVALARSTLADWVKAAAWWLAPLRDQLMNHVCAAERVFADDTPLPILDPGRG  266
            QS++ +R+GV L+RS L++WV A  + L+PL + L   V +  ++ ADDTP+ +L PG  
Sbjct  200  QSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNK  259

Query  267  RTRTGRLWAYTRDDRPFGGAAPPAVVFYATPDRTSAWPAGHLKTYRGVLQVDGYAGFEQL  326
            +T+TGRLWAY R+DR  G+A +PAV F  +PDR S  P  HL  + GVLQ D+YAGF++L
Sbjct  260  KTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNEL  319

Query  327  TQDGTVHLAACWAHTRRKFYELH-QTGSPIATEALVQIRALYDIETTLRGLPPDQRRTLR  385
             ++G +  AACWAH+RRK+ ++H +  S+++ EAL QI  LY IE+ +RG+P++QR + R
Sbjct  320  YRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAER  379

Query  386  QEQSRPRVEALELWLRQKLILL  407
            Q +++P + +LE WLR+K+  L
Sbjct  380  QRKTKPLLKSLESWLREKMKTL  401


 Score = 41.4 bits (137),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 27/59 (46%), Positives = 42/59 (72%), Gaps = 1/59 (1%)

Query  453  GRKNALFAGSEGGANRWAIVASLIETAKLNGIEPFAWLRDVLTRMIDGHPAARISELLP  511
             + ++LF GS  G++R A++ SLI T KLN+++P + LR+VL  +I + P  R+SELLP
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLG-VIADWPVNRVSELLP  453

379) Smed_6513 in NC_009622


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  251 bits (939),  Expect = 5e-68, Method: Compositional matrix adjust.
 Identities = 165/402 (42%), Positives = 266/402 (67%), Gaps = 9/402 (2%)

Query  8    TQDELSALRALVAEQAAKLSAQEAEVSKRDSIIGLLRAQLELLRHRQHGPSSEKIDRKIE  67
            + D++  L+  +AEQ A + A +  +S+R+  I+ L+AQL+ LR+ + G+ SEK+ R+I 
Sbjct  5    SSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIA  64

Query  68   QFELMLeeieasraeadarsaNSplpelddepdkpkRRPLPDGLPTEE--LVYAAPCNCP  125
            Q E  L+ ++       +R  ++++     +     R+P+P++LP +E  L+ AAPC CP
Sbjct  65   QMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRT--RKPFPESLPRDEKRLLPAAPC-CP  121

Query  126  TCGGT-SFLKAADKVVQVMEHVPASVKIVRHIEKRMVCKDCDTTVSGEMPTLPIGRGKPG  184
             CGG+ S+L  ++   + +E + ++ +++R +  +  C +CDT V +  P+ PI RG +G
Sbjct  122  NCGGSLSYL--GEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAG  179

Query  185  PGLLAHIMVAKFDDHIPLYRLSEMYDRLGIDISRSVMADWVGrvsvllsplillirAHIA  244
            PGLLA+++ +K+ +H PLY  SE+Y+R G+++SRS++++WV+    LLSPL   +++ + 
Sbjct  180  PGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVM  239

Query  245  AVDRIHTDDTPVDVLDPGRGKTKTGRVWVYVFDGSGYQDPTPRAVAYYYSPDRKGAHPAD  304
            + +++H+DDTPV+VL PG  KTKTGR+W YV ++     + + AV + YSPDRK+ HP  
Sbjct  240  TDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQT  299

Query  305  HLADFSGVMHADGYGGYKKLY-GNQIVEAACMAHVRRKFHDVIKLKPSPIAEEALSRIGA  363
            HLA FSGV++AD+Y+G++ LY    I EAAC AH RRK+HDV    PS+++EEAL +IG 
Sbjct  300  HLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQ  359

Query  364  LYDIEDRIRGMPAAERQMLRQEHAGPILRDLKFWIEETLPTL  405
            LY IE  IRGMPA +R   RQ  + P+L+ L  W+ E + TL
Sbjct  360  LYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score = 50.0 bits (170),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 31/76 (41%), Positives = 47/76 (62%), Gaps = 7/76 (9%)

Query  442  ERAMRPLGIGRKNWL-------FAGSDKGGERIADILTIIETAKQHGLNPEVYLTDVLTR  494
            +R  +PL  +  +WL       F GS+ GGER A + ++I T K ++++PE YL +VL  
Sbjct  380  QRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGV  439

Query  495  IQDHPTDRLEELLPWQ  510
            I D P +R+ ELLPW+
Sbjct  440  IADWPVNRVSELLPWR  455

380) SinmeB_4091 in NC_017323


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  251 bits (939),  Expect = 5e-68, Method: Compositional matrix adjust.
 Identities = 165/402 (42%), Positives = 266/402 (67%), Gaps = 9/402 (2%)

Query  8    TQDELSALRALVAEQAAKLSAQEAEVSKRDSIIGLLRAQLELLRHRQHGPSSEKIDRKIE  67
            + D++  L+  +AEQ A + A +  +S+R+  I+ L+AQL+ LR+ + G+ SEK+ R+I 
Sbjct  5    SSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIA  64

Query  68   QFELMLeeieasraeadarsaNSplpelddepdkpkRRPLPDGLPTEE--LVYAAPCNCP  125
            Q E  L+ ++       +R  ++++     +     R+P+P++LP +E  L+ AAPC CP
Sbjct  65   QMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRT--RKPFPESLPRDEKRLLPAAPC-CP  121

Query  126  TCGGT-SFLKAADKVVQVMEHVPASVKIVRHIEKRMVCKDCDTTVSGEMPTLPIGRGKPG  184
             CGG+ S+L  ++   + +E + ++ +++R +  +  C +CDT V +  P+ PI RG +G
Sbjct  122  NCGGSLSYL--GEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAG  179

Query  185  PGLLAHIMVAKFDDHIPLYRLSEMYDRLGIDISRSVMADWVGrvsvllsplillirAHIA  244
            PGLLA+++ +K+ +H PLY  SE+Y+R G+++SRS++++WV+    LLSPL   +++ + 
Sbjct  180  PGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVM  239

Query  245  AVDRIHTDDTPVDVLDPGRGKTKTGRVWVYVFDGSGYQDPTPRAVAYYYSPDRKGAHPAD  304
            + +++H+DDTPV+VL PG  KTKTGR+W YV ++     + + AV + YSPDRK+ HP  
Sbjct  240  TDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQT  299

Query  305  HLADFSGVMHADGYGGYKKLY-GNQIVEAACMAHVRRKFHDVIKLKPSPIAEEALSRIGA  363
            HLA FSGV++AD+Y+G++ LY    I EAAC AH RRK+HDV    PS+++EEAL +IG 
Sbjct  300  HLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQ  359

Query  364  LYDIEDRIRGMPAAERQMLRQEHAGPILRDLKFWIEETLPTL  405
            LY IE  IRGMPA +R   RQ  + P+L+ L  W+ E + TL
Sbjct  360  LYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score = 50.0 bits (170),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 31/76 (41%), Positives = 47/76 (62%), Gaps = 7/76 (9%)

Query  442  ERAMRPLGIGRKNWL-------FAGSDKGGERIADILTIIETAKQHGLNPEVYLTDVLTR  494
            +R  +PL  +  +WL       F GS+ GGER A + ++I T K ++++PE YL +VL  
Sbjct  380  QRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGV  439

Query  495  IQDHPTDRLEELLPWQ  510
            I D P +R+ ELLPW+
Sbjct  440  IADWPVNRVSELLPWR  455

381) SinmeB_5860 in NC_017324


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  251 bits (939),  Expect = 5e-68, Method: Compositional matrix adjust.
 Identities = 165/402 (42%), Positives = 266/402 (67%), Gaps = 9/402 (2%)

Query  8    TQDELSALRALVAEQAAKLSAQEAEVSKRDSIIGLLRAQLELLRHRQHGPSSEKIDRKIE  67
            + D++  L+  +AEQ A + A +  +S+R+  I+ L+AQL+ LR+ + G+ SEK+ R+I 
Sbjct  5    SSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIA  64

Query  68   QFELMLeeieasraeadarsaNSplpelddepdkpkRRPLPDGLPTEE--LVYAAPCNCP  125
            Q E  L+ ++       +R  ++++     +     R+P+P++LP +E  L+ AAPC CP
Sbjct  65   QMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRT--RKPFPESLPRDEKRLLPAAPC-CP  121

Query  126  TCGGT-SFLKAADKVVQVMEHVPASVKIVRHIEKRMVCKDCDTTVSGEMPTLPIGRGKPG  184
             CGG+ S+L  ++   + +E + ++ +++R +  +  C +CDT V +  P+ PI RG +G
Sbjct  122  NCGGSLSYL--GEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAG  179

Query  185  PGLLAHIMVAKFDDHIPLYRLSEMYDRLGIDISRSVMADWVGrvsvllsplillirAHIA  244
            PGLLA+++ +K+ +H PLY  SE+Y+R G+++SRS++++WV+    LLSPL   +++ + 
Sbjct  180  PGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVM  239

Query  245  AVDRIHTDDTPVDVLDPGRGKTKTGRVWVYVFDGSGYQDPTPRAVAYYYSPDRKGAHPAD  304
            + +++H+DDTPV+VL PG  KTKTGR+W YV ++     + + AV + YSPDRK+ HP  
Sbjct  240  TDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQT  299

Query  305  HLADFSGVMHADGYGGYKKLY-GNQIVEAACMAHVRRKFHDVIKLKPSPIAEEALSRIGA  363
            HLA FSGV++AD+Y+G++ LY    I EAAC AH RRK+HDV    PS+++EEAL +IG 
Sbjct  300  HLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQ  359

Query  364  LYDIEDRIRGMPAAERQMLRQEHAGPILRDLKFWIEETLPTL  405
            LY IE  IRGMPA +R   RQ  + P+L+ L  W+ E + TL
Sbjct  360  LYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score = 50.0 bits (170),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 31/76 (41%), Positives = 47/76 (62%), Gaps = 7/76 (9%)

Query  442  ERAMRPLGIGRKNWL-------FAGSDKGGERIADILTIIETAKQHGLNPEVYLTDVLTR  494
            +R  +PL  +  +WL       F GS+ GGER A + ++I T K ++++PE YL +VL  
Sbjct  380  QRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGV  439

Query  495  IQDHPTDRLEELLPWQ  510
            I D P +R+ ELLPW+
Sbjct  440  IADWPVNRVSELLPWR  455

382) B932_3380 in NC_019396


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  251 bits (939),  Expect = 5e-68, Method: Compositional matrix adjust.
 Identities = 156/383 (41%), Positives = 249/383 (66%), Gaps = 2/383 (0%)

Query  28   QTMVRDLAGAVDERQIEIDRLRQMIREFQRARFGRRAETLEpdqllltldadaaqlppit  87
            +++++ L   + +R+ EID+L+  +  ++R  FG R+E +      +  D +  Q  + T
Sbjct  20   EALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDT  79

Query  88   pisttlpDLNGTAPIVKPPHRQSLPEHLPRTDVTIVPDVTCCPSCGGALRDAGTTTSEML  147
              +    D     P+ +   R+++PE LPR +  ++P   CCP+CGG+L   G  T+E L
Sbjct  80   LTGRVY-DPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQL  138

Query  148  DWVPASVRVVRINRPKCACRACGTLHQAPAPERIAEGCLATPGLIAHVLTSRYCDHLPLY  207
            + + ++ RV+R  R K AC  C+T+ QAPAP R  E  +A PGL+A+VLTS+Y +H PLY
Sbjct  139  ELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLY  198

Query  208  RQSQMLARHGVALARSTLADWVKAAAWWLAPLRDQLMNHVCAAERVFADDTSLPILDPGR  267
             QS++ +R+GV L+RS L++WV A  + L+PL + L   V +  ++ ADDT++ +L PG 
Sbjct  199  CQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGN  258

Query  268  GRTRTGRLWAYTRDDRSFGGTAPPAVVFYATPDRTASWPAHHLKTYRGVLQVDGYAGFEQ  327
             +T+TGRLWAY R+DR+ G++ +PAV F  +PDR +  P  HL  + GVLQ D+YAGF++
Sbjct  259  KKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNE  318

Query  328  LTQDGKIHLAACWAHTRRKFYELH-QTGSPIATKALVQIRALYDIEASLRGLPPDQRKTL  386
            L ++G I  AACWAH+RRK+ ++H +  S+++  AL QI  LY IEA +RG+P++QR + 
Sbjct  319  LYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAE  378

Query  387  REEHSRPRVEALELWLRQKLALL  409
            R+  ++P + +LE WLR+K+  L
Sbjct  379  RQRKTKPLLKSLESWLREKMKTL  401


 Score = 41.9 bits (139),  Expect = 8e-05, Method: Compositional matrix adjust.
 Identities = 26/59 (45%), Positives = 42/59 (72%), Gaps = 1/59 (1%)

Query  455  GRKNALFAGSEGGANRWAIVASLIETAKLNGIEPFAWLRDVLTRMIEGYPAARIAELLP  513
             + ++LF GS  G++R A++ SLI T KLN+++P + LR+VL  +I + P  R++ELLP
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLG-VIADWPVNRVSELLP  453

383) SinmeB_1295 in NC_017322


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  250 bits (934),  Expect = 1e-67, Method: Compositional matrix adjust.
 Identities = 165/402 (42%), Positives = 266/402 (67%), Gaps = 9/402 (2%)

Query  47   TQDELSALRALVAEQAAKLSAQEAEVSKRDSIIGLLRAQLELLRHRQHGPSSEKIDRKIE  106
            + D++  L+  +AEQ A + A +  +S+R+  I+ L+AQL+ LR+ + G+ SEK+ R+I 
Sbjct  5    SSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIA  64

Query  107  QFELMLeeieasraeadarsaNSplpelddepdkpkRRPLPDGLPTEE--LVYAAPCNCP  164
            Q E  L+ ++       +R  ++++     +     R+P+P++LP +E  L+ AAPC CP
Sbjct  65   QMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRT--RKPFPESLPRDEKRLLPAAPC-CP  121

Query  165  TCGGT-SFLKAADKVVQVMEHVPASVKIVRHIEKRMVCKDCDTTVSGEMPTLPIGRGKPG  223
             CGG+ S+L  ++   + +E + ++ +++R +  +  C +CDT V +  P+ PI RG +G
Sbjct  122  NCGGSLSYL--GEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAG  179

Query  224  PGLLAHIMVAKFDDHIPLYRLSEMYDRLGIDISRSVMADWVGrvsvllsplillirAHIA  283
            PGLLA+++ +K+ +H PLY  SE+Y+R G+++SRS++++WV+    LLSPL   +++ + 
Sbjct  180  PGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVM  239

Query  284  AVDRIHTDDTPVDVLDPGRGKTKTGRVWVYVFDGSGYQDPTPRAVAYYYSPDRKGAHPAD  343
            + +++H+DDTPV+VL PG  KTKTGR+W YV ++     + + AV + YSPDRK+ HP  
Sbjct  240  TDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQT  299

Query  344  HLADFSGVMHADGYGGYKKLY-GNQIVEAACMAHVRRKFHDVIKLKPSPIAEEALSRIGA  402
            HLA FSGV++AD+Y+G++ LY    I EAAC AH RRK+HDV    PS+++EEAL +IG 
Sbjct  300  HLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQ  359

Query  403  LYDIEDRIRGMPAAERQMLRQEHAGPILRDLKFWIEETLPTL  444
            LY IE  IRGMPA +R   RQ  + P+L+ L  W+ E + TL
Sbjct  360  LYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score = 49.2 bits (167),  Expect = 6e-07, Method: Compositional matrix adjust.
 Identities = 31/76 (41%), Positives = 47/76 (62%), Gaps = 7/76 (9%)

Query  481  ERAMRPLGIGRKNWL-------FAGSDKGGERIADILTIIETAKQHGLNPEVYLTDVLTR  533
            +R  +PL  +  +WL       F GS+ GGER A + ++I T K ++++PE YL +VL  
Sbjct  380  QRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGV  439

Query  534  IQDHPTDRLEELLPWQ  549
            I D P +R+ ELLPW+
Sbjct  440  IADWPVNRVSELLPWR  455

384) SinmeB_5967 in NC_017324


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  250 bits (932),  Expect = 2e-67, Method: Compositional matrix adjust.
 Identities = 165/402 (42%), Positives = 266/402 (67%), Gaps = 9/402 (2%)

Query  42   TQDELSALRALVAEQAAKLSAQEAEVSKRDSIIGLLRAQLELLRHRQHGPSSEKIDRKIE  101
            + D++  L+  +AEQ A + A +  +S+R+  I+ L+AQL+ LR+ + G+ SEK+ R+I 
Sbjct  5    SSDDIFLLKQRLAEQEALIHALQEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIA  64

Query  102  QFELMLeeieasraeadarsaNSplpelddepdkpkRRPLPDGLPTEE--LVYAAPCNCP  159
            Q E  L+ ++       +R  ++++     +     R+P+P++LP +E  L+ AAPC CP
Sbjct  65   QMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRT--RKPFPESLPRDEKRLLPAAPC-CP  121

Query  160  TCGGT-SFLKAADKVVQVMEHVPASVKIVRHIEKRMVCKDCDTTVSGEMPTLPIGRGKPG  218
             CGG+ S+L  ++   + +E + ++ +++R +  +  C +CDT V +  P+ PI RG +G
Sbjct  122  NCGGSLSYL--GEDTAEQLELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAG  179

Query  219  PGLLAHIMVAKFDDHIPLYRLSEMYDRLGIDISRSVMADWVGrvsvllsplillirAHIA  278
            PGLLA+++ +K+ +H PLY  SE+Y+R G+++SRS++++WV+    LLSPL   +++ + 
Sbjct  180  PGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVM  239

Query  279  AVDRIHTDDTPVDVLDPGRGKTKTGRVWVYVFDGSGYQDPTPRAVAYYYSPDRKGAHPAD  338
            + +++H+DDTPV+VL PG  KTKTGR+W YV ++     + + AV + YSPDRK+ HP  
Sbjct  240  TDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQT  299

Query  339  HLADFSGVMHADGYGGYKKLY-GNQIVEAACMAHVRRKFHDVIKLKPSPIAEEALSRIGA  397
            HLA FSGV++AD+Y+G++ LY    I EAAC AH RRK+HDV    PS+++EEAL +IG 
Sbjct  300  HLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQ  359

Query  398  LYDIEDRIRGMPAAERQMLRQEHAGPILRDLKFWIEETLPTL  439
            LY IE  IRGMPA +R   RQ  + P+L+ L  W+ E + TL
Sbjct  360  LYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score = 49.0 bits (166),  Expect = 6e-07, Method: Compositional matrix adjust.
 Identities = 31/76 (41%), Positives = 47/76 (62%), Gaps = 7/76 (9%)

Query  476  ERAMRPLGIGRKNWL-------FAGSDKGGERIADILTIIETAKQHGLNPEVYLTDVLTR  528
            +R  +PL  +  +WL       F GS+ GGER A + ++I T K ++++PE YL +VL  
Sbjct  380  QRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGV  439

Query  529  IQDHPTDRLEELLPWQ  544
            I D P +R+ ELLPW+
Sbjct  440  IADWPVNRVSELLPWR  455

385) Smed_6486 in NC_009622


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  244 bits (910),  Expect = 9e-66, Method: Compositional matrix adjust.
 Identities = 158/380 (42%), Positives = 253/380 (67%), Gaps = 9/380 (2%)

Query  31   EAEVSKRDSIIGLLRAQLELLRHRQHGPSSEKIDRKIEQFELMLeeieasraeadarsaN  90
            +  +S+R+  I+ L+AQL+ LR+ + G+ SEK+ R+I Q E  L+ ++       +R  +
Sbjct  27   QEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYD  86

Query  91   SplpelddepdkpkRRPLPDGLPTEE--LVYAAPCNCPTCGGT-SFLKAADKVVQVMEHV  147
            +++     +     R+P+P++LP +E  L+ AAPC CP CGG+ S+L  ++   + +E +
Sbjct  87   PAVQRPLRQTRT--RKPFPESLPRDEKRLLPAAPC-CPNCGGSLSYL--GEDTAEQLELM  141

Query  148  PASVKIVRHIEKRMVCKDCDTTVSGEMPTLPIGRGKPGPGLLAHIMVAKFDDHIPLYRLS  207
             ++ +++R +  +  C +CDT V +  P+ PI RG +GPGLLA+++ +K+ +H PLY  S
Sbjct  142  RSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQS  201

Query  208  EMYDRLGIDISRSVMADWVGrvsvllsplillirAHIAAVDRIHTDDTPVDVLDPGRGKT  267
            E+Y+R G+++SRS++++WV+    LLSPL   +++ + + +++H+DDTPV+VL PG  KT
Sbjct  202  EIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKT  261

Query  268  KTGRVWVYVFDGSGYQDPTPRAVAYYYSPDRKGAHPADHLADFSGVMHADGYGGYKKLY-  326
            KTGR+W YV ++     + + AV + YSPDRK+ HP  HLA FSGV++AD+Y+G++ LY 
Sbjct  262  KTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR  321

Query  327  GNQIVEAACMAHVRRKFHDVIKLKPSPIAEEALSRIGALYDIEDRIRGMPAAERQMLRQE  386
               I EAAC AH RRK+HDV    PS+++EEAL +IG LY IE  IRGMPA +R   RQ 
Sbjct  322  NGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQR  381

Query  387  HAGPILRDLKFWIEETLPTL  406
             + P+L+ L  W+ E + TL
Sbjct  382  KTKPLLKSLESWLREKMKTL  401


 Score = 49.2 bits (167),  Expect = 5e-07, Method: Compositional matrix adjust.
 Identities = 31/76 (41%), Positives = 47/76 (62%), Gaps = 7/76 (9%)

Query  443  ERAMRPLGIGRKNWL-------FAGSDKGGERIADILTIIETAKQHGLNPEVYLTDVLTR  495
            +R  +PL  +  +WL       F GS+ GGER A + ++I T K ++++PE YL +VL  
Sbjct  380  QRKTKPLLKSLESWLREKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGV  439

Query  496  IQDHPTDRLEELLPWQ  511
            I D P +R+ ELLPW+
Sbjct  440  IADWPVNRVSELLPWR  455

386) Pden_3593 in NC_008687


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  243 bits (906),  Expect = 1e-65, Method: Compositional matrix adjust.
 Identities = 145/332 (44%), Positives = 226/332 (69%), Gaps = 16/332 (4%)

Query  1    MPVPIAAAACAGSARMVRHEPATGPRAVPNEELEYVPGRFIVNRIVRPRQTCTCCERFVQ  60
            +P +   + C+GS   + ++ A        E+LE + + F V R VR +++CT C+ +VQ
Sbjct  114  LPAAPCCPNCGGSLSYLGEDTA--------EQLELMRSAFRVIRTVREKHACTQCDTIVQ  165

Query  61   APLPSRPIERGRPGPGLLTHVLVSKYADHLPLYRQSQIFDREGLDLDRSTLADWVGKSTA  120
            AP PSRPIERG +GPGLL++VL SKYA+H PLY QS+I++R+G++L RS L++WV+    
Sbjct  166  APAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDACCR  225

Query  121  LLEPLAEAIGRHVLSAEAIFADDTPVSMLAPGTGKTQTARLWTYARDERPWGGDTPPAAW  180
            LL PL EA+   V++   + ADDTPV +L PG  KT+T+RLW+Y R++R  G+  +PA W
Sbjct  226  LLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSALAPAVW  285

Query  181  YRFSGDRKGQHPKDHLARYRGWMHADGYAGFEDLYRSGSIREVACMAHVRRKFVDIHRSQ  240
            + +S DRK+ HP+ HLA + G ++AD+YAGF++LYR+G+I E AC AH RRK+ D+H   
Sbjct  286  FAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAACWAHARRKIHDVHVRI  345

Query  241  GSPIAEEAIGRIAQLYAVEKEARGSPPDRRAELRQAHSAPIFDNLERWLALQLTTV---S  297
             S+++EEA+ +I+QLYA+E + RG P+++R   RQ  + P++ +LE WL  ++ T+   S
Sbjct  346  PSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTLFFGS  405

Query  298  GKSPLASAIRYALA---RMERMRP--YLDHGI  324
            G +   +A+ Y+L    +++ + P  YL H +
Sbjct  406  GHGGERGALLYSLIGTCKLNDVDPESYLRHVL  437


 Score = 51.9 bits (177),  Expect = 6e-08, Method: Compositional matrix adjust.
 Identities = 25/60 (42%), Positives = 40/60 (67%), Gaps = 0/60 (0%)

Query  342  GRKNYLFVGSEAGGKAAAITYTLIETAKLNAIDPHAWLADTLARIPDYKITKVDDLLPWK  401
             + + LF GS  GG  +A+ Y+LI T KLN +DP++ L + L+ I+D  + +V +LLPW+
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455

387) AZL_027520 in NC_013854


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  235 bits (877),  Expect = 4e-63, Method: Compositional matrix adjust.
 Identities = 174/428 (41%), Positives = 253/428 (60%), Gaps = 70/428 (16%)

Query  111  RKRPSRQPFPDHLPR-ERVVVPAPASCPCCGSDKLCKLGETITETLEVIPRHWKVIQTVR  169
            R+  +R+PFP+ LPR E+ ++PA++ CP CG+  L  LGE  +E LE++    +VI+TVR
Sbjct  94   RQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGS-LSYLGEDTAEQLELMRSAFRVIRTVR  152

Query  170  ERFSCRACETITQPPAPFHTTPRGWAGPNLLATLLFEKFGQHQPLNRQAERFAREGVPLS  229
            E+ +C  C+TI Q+PAP +   RG AGP LLA +L  K+++H PL  Q+E ++R+GV LS
Sbjct  153  EKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELS  212

Query  230  LSTLADQVGAAAAVLKPLHDLIAAHVMAAGRLHGDDTPVPVLAKG--KTDTGRLWVYVRD  287
             S L++ V+A   +L PL++ + + VM+ G+LH+DDTPV VL  G  KT TGRLW YVR+
Sbjct  213  RSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRN  272

Query  288  DRPFAGQTPPAALFHYSRDRRGEHPERHLAGFTGWLQADAFAGYNRLYEPDRRPGPIHDV  347
            DR  ++  +PA  F YS DR++ HP+ HLA F+G LQADA+AG+N LY    R G I + 
Sbjct  273  DRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELY----RNGGITEA  328

Query  348  LCWAHARRGFFKLADIAANTRRGKDAPPISPLALEAVRRIDAIFDLERTLNGKPAAERLA  407
             CWAHARR   K+ D+             S+L+ EA+ +I+ ++ +E  + G PA +RLA
Sbjct  329  ACWAHARR---KIHDVHVRIP--------SALTEEALEQIGQLYAIEADIRGMPAEQRLA  377

Query  408  ARQEHGVALVAALEGWMRTERARLSRHAPVAKAMDYMLTRWDSFTRFLGDGRLCLTNNAA  467
             RQ    +L+ +LE+W+R     L                      F+G G+        
Sbjct  378  ERQRKTKPLLKSLESWLREKMKTL----------------------FFGSGH--------  407

Query  468  KRGLRGIALGRKAWLFCGSDRGGQRAAIMYGLITTAKLNDVDPQAWLADVLARINDMPQT  527
                             G++RG    A++Y+LI T KLNDVDP++ L +VL+ I D P  
Sbjct  408  -----------------GGERG----ALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVN  446

Query  528  RLRELLPW  535
            R+ ELLPW
Sbjct  447  RVSELLPW  454

388) Rleg_4905 in NC_012848


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  235 bits (875),  Expect = 6e-63, Method: Compositional matrix adjust.
 Identities = 161/392 (42%), Positives = 260/392 (67%), Gaps = 23/392 (5%)

Query  47   VSHSEALIARLKLEIEKVRRELYGSRSERKARlleqmelqleeleadagedelaaevaaK  106
            +S+ E  I +L+ +++K+RR  +GSRSE+ +R + QME +L+ L+ +++           
Sbjct  30   LSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVY---D  86

Query  107  ASTVRAFERKRPSRKPFPEHLPR-ERVVIAAPASCPCCGSGKLSKLGEDITETLEVIPRQ  165
            ++  R++ + R +RKPFPE LPR E+ +++A++ CP CG G LS LGED +E LE++   
Sbjct  87   PAVQRPLRQTR-TRKPFPESLPRDEKRLLPAAPCCPNCG-GSLSYLGEDTAEQLELMRSA  144

Query  166  WKVIQTVREKFTCRECEKITQPPAPFHVTPRGFAGPSLLAMILFEKFAQHQPLNRQSERY  225
             +VI+TVREK +C +C+ I Q+PAP +   RG+AGP+LLA +L  K+A+H PL  QSE Y
Sbjct  145  FRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIY  204

Query  226  GREGIDLSLSTLADQVGACAAALKPLHALIEAHVLAAERLHGDDTTVPILAKG--KTDTG  283
            GR+G++LS S L++ V+AC   L PL+  +++ V++  +LH+DDT V +L  G  KT TG
Sbjct  205  GRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTG  264

Query  284  RIWTYVRDDRPFGGQSPPAALYYASRDRRQEHPERHLKTFTGILQADAYGGYNPLFKVDR  343
            R+W+YVR+DR  G+  +PA  +  S DR+  HP+ HL  F+G+LQADAY+G+N L++   
Sbjct  265  RLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYR---  321

Query  344  DPGPLTQALCWSHARRKFFVLADIATNAKRGSRAAPISPMALEAVKRIDALFDIEREING  403
              G +T+A CW+HARRK+           ++ +    S+++ EA+ +I+ L+ IE +I G
Sbjct  322  -NGGITEAACWAHARRKI-----------HDVHVRIPSALTEEALEQIGQLYAIEADIRG  369

Query  404  LAADQRLEHRRKGSLPLVGELHRWLQTERAKL  435
            ++A+QRL +R++ + PL+  L+ WL+     L
Sbjct  370  MPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score = 52.4 bits (179),  Expect = 6e-08, Method: Compositional matrix adjust.
 Identities = 26/54 (49%), Positives = 45/54 (84%), Gaps = 0/54 (0%)

Query  486  LFAGSDRGADRAAFMVTLIMSAKLNDIDPQAWLADVLARIADTPISKLEQLLPW  539
            LF GS++G++R+A++ +LI + KLND+DP++ L +VL+ IAD P++++ +LLPW
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

389) Xaut_2254 in NC_009720


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  233 bits (870),  Expect = 1e-62, Method: Compositional matrix adjust.
 Identities = 161/382 (43%), Positives = 244/382 (64%), Gaps = 24/382 (6%)

Query  42   IAHLKLTIEKLRRELYGQRSERTVRLIDQMELQLEELEARASEDEIAAQEsarlaslpap  101
            I HL+  ++KLRR  +G RSE+  R I QME +L+ L+      E  +  +    +    
Sbjct  37   IDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQ-----KESDTLTGRVYDPAVQR  91

Query  102  aprrrpVRKPFPEHLPR-ERVVVPAPTSCPCCGSMKLSKLGEDVTETLEIVPRSWKVIQT  160
            + R+   RKPFPE LPR E+ ++PA+  CP CG+  LS LGED +E LE++  + +VI+T
Sbjct  92   PLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGG-SLSYLGEDTAEQLELMRSAFRVIRT  150

Query  161  VREKFTCRQCEAITQPPAPFHVTPRAFMGPHLLATILFEKFGQHQPLNRQSERYGREGID  220
            VREK +C QC++I Q+PAP +   R++ GP LLA +L  K+++H PL  QSE YGR+G++
Sbjct  151  VREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVE  210

Query  221  LSVSTLADQVGTATAALRPLHDLIARHVMAAERLHADDTTVPILAKG--KTDTGRIWTYV  278
            LS S L++ V++    L PL++ +   VM+  +LHADDT V +L  G  KT TGR+W+YV
Sbjct  211  LSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYV  270

Query  279  RDDRPFGGADPPAALYFASRDRRQAHPDAHLAGWRGILQADAYGGYNGLYDPARPGGPVT  338
            R+DR  G+A +PA  +  S DR+  HP++HLA   G+LQADAY+G+N LY   R GG +T
Sbjct  271  RNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELY---RNGG-IT  326

Query  339  SALCWSHARRGFFELADIaasarrgpgaapVSPIAMEAVKRIDALFEIERGINGLSAKER  398
             A CW+HARR + ++                S+++ EA+ +I+ L+ IE +I G++A +R
Sbjct  327  EAACWAHARRKIHDV-----------HVRIPSALTEEALEQIGQLYAIEADIRGMPAEQR  375

Query  399  RDARQAQSRPLVDDLHAWLGEQ  420
               RQ +++PL+  L++WL E+
Sbjct  376  LAERQRKTKPLLKSLESWLREK  397


 Score = 50.3 bits (171),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 29/54 (54%), Positives = 43/54 (80%), Gaps = 0/54 (0%)

Query  475  LFAGSDRGAERAAAMATLITTAKLNTVDPQAWLADVLARIAGTPQSRLAELLPW  528
            LF GS++G+ER+A + +LI T KLN VDP++ L +VL+ IA+ P +R++ELLPW
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

390) amb0403 in NC_007626


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  231 bits (861),  Expect = 5e-62, Method: Compositional matrix adjust.
 Identities = 154/368 (42%), Positives = 240/368 (66%), Gaps = 15/368 (4%)

Query  2    EIARLRRERFGQSAERSTR-IeqlelsledleetaaaveaaaetaevQAHPRSKPARRLL  60
            ++ +LRR  FG  +E+ +R I Q+E  L+ L+  + ++ +    + VQ   R   +R+ +
Sbjct  43   QLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRTRKPF  102

Query  61   PEHLPR-VRVVEPSPSACPCCGGKLHKLGEDITETLERIPAKWRVIQHVREKFTCRSCEA  119
            PE LPR  + + P+++ CP CGG L  LGED +E LE + +  RVI+ VREK +C  C++
Sbjct  103  PESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCDT  162

Query  120  ITQPPAPFHPIARGRAGANLLAEVVFAKFGLHLPLHRQSASFAREGVEIDVSTLADWVGA  179
            I Q+PAP +PI RG AG+ LLA V+ +K++ H PL  QS  ++R+GVE+  S L++WV+A
Sbjct  163  IVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWVDA  222

Query  180  VSVALKPLVEAIADHAQAGPRVHVDDTPVPVLAPRAQARSDQTMAAKPDGKTKTGRLWTM  239
                L PL EA+ +   ++ ++H DDTPV VL P              + KTKTGRLW+ 
Sbjct  223  CCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLP-------------GNKKTKTGRLWAY  269

Query  240  VRDDRPFGGNDPPAAAYFYSPDRSGEHAEGFLTGFSGIMQADAFSGFGRLYQQGAIVEAA  299
            VR+DR  G+  +PA  + YSPDR + H++  L+ FSG++QADA++GF  LY++G+I EAA
Sbjct  270  VRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAA  329

Query  300  CWAHGRRKFFDLAQLKKAPIAIEAVKRIDALFAIERDIAGLSPEARLTARAGLSRPLVDD  359
            CWAH+RRK+ D+     ++++ EA+ +I+ L+AIE DI G+++E RL+ R   ++PL+  
Sbjct  330  CWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKS  389

Query  360  LAVWLHQK  367
            L  WL++K
Sbjct  390  LESWLREK  397

391) Rvan_0391 in NC_014664


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  230 bits (858),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 157/377 (42%), Positives = 243/377 (65%), Gaps = 24/377 (6%)

Query  30   IAHLRLEIEKLRRVLYGSRSEHKarlleqmelqleeletaaaedellaetatartQGTPS  89
            I HL+ +++KLRR+ +GSRSE          +   E +    + E  + T+     +   
Sbjct  37   IDHLQAQLDKLRRMNFGSRSEK-----VSRRIAQMEADLNRLQKESDTLTGRVYDPAVQR  91

Query  90   STRKHPSRKPFPAHLPR-ERVVLPAPTCCPSCGSTKLSKLGEDVTETLEVVPRRWKVIQT  148
            + R+  +RKPFP  LPR E+ +LPA+ CCP+CG++ LS LGED +E LE++    +VI+T
Sbjct  92   PLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGS-LSYLGEDTAEQLELMRSAFRVIRT  150

Query  149  VREKFSCRCCEAIAQPPAPFHATPRGFAGPGLLAMILFEKFGQHQPLNRQSERYAREGVE  208
            VREK +C  C++I Q+PAP ++  RG+AGPGLLA +L  K+++H PL  QSE Y+R+GVE
Sbjct  151  VREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVE  210

Query  209  LSVSTLADQVGSCMAALQPLQALIEAHVLSAERLFGDDTTVPILAKG--KTVTGRIWTYV  266
            LS S L++ V++C   L PL+  +++ V++  +L +DDT V +L  G  KT TGR+W+YV
Sbjct  211  LSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYV  270

Query  267  RDDRPFGGTAPPAALYYASRDRRQEHPESHLRDFAGILQADAYSGYNGLYDPAREKGAIV  326
            R+DR  G++ +PA  +  S DR+  HP++HL  F+G+LQADAY+G+N LY     +G+I 
Sbjct  271  RNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELY----RNGGIT  326

Query  327  SALCWAHARRQFFELADIAANAKRGKQAPAISPIALEAVKRIDALFDIERSINGLPASER  386
             A CWAHARR++ ++           +    S+++ EA+ +I+ L+ IE  I G+PA +R
Sbjct  327  EAACWAHARRKIHDV-----------HVRIPSALTEEALEQIGQLYAIEADIRGMPAEQR  375

Query  387  LRVRQKQSAPLLADLKT  403
            L  RQ+++ PLL  L +
Sbjct  376  LAERQRKTKPLLKSLES  392


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 26/54 (49%), Positives = 43/54 (80%), Gaps = 0/54 (0%)

Query  463  LFAGSDRGADRAAFMMTMIMTAKLNGIDPMAWLADVLARIAGQPQSRLHELLPW  516
            LF GS++G++R+A++ ++I T KLN++DP + L +VL+ IA+ P +R+ ELLPW
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

392) Rvan_0412 in NC_014664


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  230 bits (858),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 157/377 (42%), Positives = 243/377 (65%), Gaps = 24/377 (6%)

Query  30   IAHLRLEIEKLRRVLYGSRSEHKarlleqmelqleeletaaaedellaetatartQGTPS  89
            I HL+ +++KLRR+ +GSRSE          +   E +    + E  + T+     +   
Sbjct  37   IDHLQAQLDKLRRMNFGSRSEK-----VSRRIAQMEADLNRLQKESDTLTGRVYDPAVQR  91

Query  90   STRKHPSRKPFPAHLPR-ERVVLPAPTCCPSCGSTKLSKLGEDVTETLEVVPRRWKVIQT  148
            + R+  +RKPFP  LPR E+ +LPA+ CCP+CG++ LS LGED +E LE++    +VI+T
Sbjct  92   PLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGS-LSYLGEDTAEQLELMRSAFRVIRT  150

Query  149  VREKFSCRCCEAIAQPPAPFHATPRGFAGPGLLAMILFEKFGQHQPLNRQSERYAREGVE  208
            VREK +C  C++I Q+PAP ++  RG+AGPGLLA +L  K+++H PL  QSE Y+R+GVE
Sbjct  151  VREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVE  210

Query  209  LSVSTLADQVGSCMAALQPLQALIEAHVLSAERLFGDDTTVPILAKG--KTVTGRIWTYV  266
            LS S L++ V++C   L PL+  +++ V++  +L +DDT V +L  G  KT TGR+W+YV
Sbjct  211  LSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYV  270

Query  267  RDDRPFGGTAPPAALYYASRDRRQEHPESHLRDFAGILQADAYSGYNGLYDPAREKGAIV  326
            R+DR  G++ +PA  +  S DR+  HP++HL  F+G+LQADAY+G+N LY     +G+I 
Sbjct  271  RNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELY----RNGGIT  326

Query  327  SALCWAHARRQFFELADIAANAKRGKQAPAISPIALEAVKRIDALFDIERSINGLPASER  386
             A CWAHARR++ ++           +    S+++ EA+ +I+ L+ IE  I G+PA +R
Sbjct  327  EAACWAHARRKIHDV-----------HVRIPSALTEEALEQIGQLYAIEADIRGMPAEQR  375

Query  387  LRVRQKQSAPLLADLKT  403
            L  RQ+++ PLL  L +
Sbjct  376  LAERQRKTKPLLKSLES  392


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 26/54 (49%), Positives = 43/54 (80%), Gaps = 0/54 (0%)

Query  463  LFAGSDRGADRAAFMMTMIMTAKLNGIDPMAWLADVLARIAGQPQSRLHELLPW  516
            LF GS++G++R+A++ ++I T KLN++DP + L +VL+ IA+ P +R+ ELLPW
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

393) Rvan_1442 in NC_014664


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  230 bits (858),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 157/377 (42%), Positives = 243/377 (65%), Gaps = 24/377 (6%)

Query  30   IAHLRLEIEKLRRVLYGSRSEHKarlleqmelqleeletaaaedellaetatartQGTPS  89
            I HL+ +++KLRR+ +GSRSE          +   E +    + E  + T+     +   
Sbjct  37   IDHLQAQLDKLRRMNFGSRSEK-----VSRRIAQMEADLNRLQKESDTLTGRVYDPAVQR  91

Query  90   STRKHPSRKPFPAHLPR-ERVVLPAPTCCPSCGSTKLSKLGEDVTETLEVVPRRWKVIQT  148
            + R+  +RKPFP  LPR E+ +LPA+ CCP+CG++ LS LGED +E LE++    +VI+T
Sbjct  92   PLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGS-LSYLGEDTAEQLELMRSAFRVIRT  150

Query  149  VREKFSCRCCEAIAQPPAPFHATPRGFAGPGLLAMILFEKFGQHQPLNRQSERYAREGVE  208
            VREK +C  C++I Q+PAP ++  RG+AGPGLLA +L  K+++H PL  QSE Y+R+GVE
Sbjct  151  VREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVE  210

Query  209  LSVSTLADQVGSCMAALQPLQALIEAHVLSAERLFGDDTTVPILAKG--KTVTGRIWTYV  266
            LS S L++ V++C   L PL+  +++ V++  +L +DDT V +L  G  KT TGR+W+YV
Sbjct  211  LSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYV  270

Query  267  RDDRPFGGTAPPAALYYASRDRRQEHPESHLRDFAGILQADAYSGYNGLYDPAREKGAIV  326
            R+DR  G++ +PA  +  S DR+  HP++HL  F+G+LQADAY+G+N LY     +G+I 
Sbjct  271  RNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELY----RNGGIT  326

Query  327  SALCWAHARRQFFELADIAANAKRGKQAPAISPIALEAVKRIDALFDIERSINGLPASER  386
             A CWAHARR++ ++           +    S+++ EA+ +I+ L+ IE  I G+PA +R
Sbjct  327  EAACWAHARRKIHDV-----------HVRIPSALTEEALEQIGQLYAIEADIRGMPAEQR  375

Query  387  LRVRQKQSAPLLADLKT  403
            L  RQ+++ PLL  L +
Sbjct  376  LAERQRKTKPLLKSLES  392


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 26/54 (49%), Positives = 43/54 (80%), Gaps = 0/54 (0%)

Query  463  LFAGSDRGADRAAFMMTMIMTAKLNGIDPMAWLADVLARIAGQPQSRLHELLPW  516
            LF GS++G++R+A++ ++I T KLN++DP + L +VL+ IA+ P +R+ ELLPW
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

394) Rvan_1478 in NC_014664


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  230 bits (858),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 157/377 (42%), Positives = 243/377 (65%), Gaps = 24/377 (6%)

Query  30   IAHLRLEIEKLRRVLYGSRSEHKarlleqmelqleeletaaaedellaetatartQGTPS  89
            I HL+ +++KLRR+ +GSRSE          +   E +    + E  + T+     +   
Sbjct  37   IDHLQAQLDKLRRMNFGSRSEK-----VSRRIAQMEADLNRLQKESDTLTGRVYDPAVQR  91

Query  90   STRKHPSRKPFPAHLPR-ERVVLPAPTCCPSCGSTKLSKLGEDVTETLEVVPRRWKVIQT  148
            + R+  +RKPFP  LPR E+ +LPA+ CCP+CG++ LS LGED +E LE++    +VI+T
Sbjct  92   PLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGS-LSYLGEDTAEQLELMRSAFRVIRT  150

Query  149  VREKFSCRCCEAIAQPPAPFHATPRGFAGPGLLAMILFEKFGQHQPLNRQSERYAREGVE  208
            VREK +C  C++I Q+PAP ++  RG+AGPGLLA +L  K+++H PL  QSE Y+R+GVE
Sbjct  151  VREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVE  210

Query  209  LSVSTLADQVGSCMAALQPLQALIEAHVLSAERLFGDDTTVPILAKG--KTVTGRIWTYV  266
            LS S L++ V++C   L PL+  +++ V++  +L +DDT V +L  G  KT TGR+W+YV
Sbjct  211  LSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYV  270

Query  267  RDDRPFGGTAPPAALYYASRDRRQEHPESHLRDFAGILQADAYSGYNGLYDPAREKGAIV  326
            R+DR  G++ +PA  +  S DR+  HP++HL  F+G+LQADAY+G+N LY     +G+I 
Sbjct  271  RNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELY----RNGGIT  326

Query  327  SALCWAHARRQFFELADIAANAKRGKQAPAISPIALEAVKRIDALFDIERSINGLPASER  386
             A CWAHARR++ ++           +    S+++ EA+ +I+ L+ IE  I G+PA +R
Sbjct  327  EAACWAHARRKIHDV-----------HVRIPSALTEEALEQIGQLYAIEADIRGMPAEQR  375

Query  387  LRVRQKQSAPLLADLKT  403
            L  RQ+++ PLL  L +
Sbjct  376  LAERQRKTKPLLKSLES  392


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 26/54 (49%), Positives = 43/54 (80%), Gaps = 0/54 (0%)

Query  463  LFAGSDRGADRAAFMMTMIMTAKLNGIDPMAWLADVLARIAGQPQSRLHELLPW  516
            LF GS++G++R+A++ ++I T KLN++DP + L +VL+ IA+ P +R+ ELLPW
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

395) Rvan_1502 in NC_014664


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  230 bits (858),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 157/377 (42%), Positives = 243/377 (65%), Gaps = 24/377 (6%)

Query  30   IAHLRLEIEKLRRVLYGSRSEHKarlleqmelqleeletaaaedellaetatartQGTPS  89
            I HL+ +++KLRR+ +GSRSE          +   E +    + E  + T+     +   
Sbjct  37   IDHLQAQLDKLRRMNFGSRSEK-----VSRRIAQMEADLNRLQKESDTLTGRVYDPAVQR  91

Query  90   STRKHPSRKPFPAHLPR-ERVVLPAPTCCPSCGSTKLSKLGEDVTETLEVVPRRWKVIQT  148
            + R+  +RKPFP  LPR E+ +LPA+ CCP+CG++ LS LGED +E LE++    +VI+T
Sbjct  92   PLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGS-LSYLGEDTAEQLELMRSAFRVIRT  150

Query  149  VREKFSCRCCEAIAQPPAPFHATPRGFAGPGLLAMILFEKFGQHQPLNRQSERYAREGVE  208
            VREK +C  C++I Q+PAP ++  RG+AGPGLLA +L  K+++H PL  QSE Y+R+GVE
Sbjct  151  VREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVE  210

Query  209  LSVSTLADQVGSCMAALQPLQALIEAHVLSAERLFGDDTTVPILAKG--KTVTGRIWTYV  266
            LS S L++ V++C   L PL+  +++ V++  +L +DDT V +L  G  KT TGR+W+YV
Sbjct  211  LSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYV  270

Query  267  RDDRPFGGTAPPAALYYASRDRRQEHPESHLRDFAGILQADAYSGYNGLYDPAREKGAIV  326
            R+DR  G++ +PA  +  S DR+  HP++HL  F+G+LQADAY+G+N LY     +G+I 
Sbjct  271  RNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELY----RNGGIT  326

Query  327  SALCWAHARRQFFELADIAANAKRGKQAPAISPIALEAVKRIDALFDIERSINGLPASER  386
             A CWAHARR++ ++           +    S+++ EA+ +I+ L+ IE  I G+PA +R
Sbjct  327  EAACWAHARRKIHDV-----------HVRIPSALTEEALEQIGQLYAIEADIRGMPAEQR  375

Query  387  LRVRQKQSAPLLADLKT  403
            L  RQ+++ PLL  L +
Sbjct  376  LAERQRKTKPLLKSLES  392


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 26/54 (49%), Positives = 43/54 (80%), Gaps = 0/54 (0%)

Query  463  LFAGSDRGADRAAFMMTMIMTAKLNGIDPMAWLADVLARIAGQPQSRLHELLPW  516
            LF GS++G++R+A++ ++I T KLN++DP + L +VL+ IA+ P +R+ ELLPW
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

396) Rvan_1902 in NC_014664


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  230 bits (858),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 157/377 (42%), Positives = 243/377 (65%), Gaps = 24/377 (6%)

Query  30   IAHLRLEIEKLRRVLYGSRSEHKarlleqmelqleeletaaaedellaetatartQGTPS  89
            I HL+ +++KLRR+ +GSRSE          +   E +    + E  + T+     +   
Sbjct  37   IDHLQAQLDKLRRMNFGSRSEK-----VSRRIAQMEADLNRLQKESDTLTGRVYDPAVQR  91

Query  90   STRKHPSRKPFPAHLPR-ERVVLPAPTCCPSCGSTKLSKLGEDVTETLEVVPRRWKVIQT  148
            + R+  +RKPFP  LPR E+ +LPA+ CCP+CG++ LS LGED +E LE++    +VI+T
Sbjct  92   PLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGS-LSYLGEDTAEQLELMRSAFRVIRT  150

Query  149  VREKFSCRCCEAIAQPPAPFHATPRGFAGPGLLAMILFEKFGQHQPLNRQSERYAREGVE  208
            VREK +C  C++I Q+PAP ++  RG+AGPGLLA +L  K+++H PL  QSE Y+R+GVE
Sbjct  151  VREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVE  210

Query  209  LSVSTLADQVGSCMAALQPLQALIEAHVLSAERLFGDDTTVPILAKG--KTVTGRIWTYV  266
            LS S L++ V++C   L PL+  +++ V++  +L +DDT V +L  G  KT TGR+W+YV
Sbjct  211  LSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYV  270

Query  267  RDDRPFGGTAPPAALYYASRDRRQEHPESHLRDFAGILQADAYSGYNGLYDPAREKGAIV  326
            R+DR  G++ +PA  +  S DR+  HP++HL  F+G+LQADAY+G+N LY     +G+I 
Sbjct  271  RNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELY----RNGGIT  326

Query  327  SALCWAHARRQFFELADIAANAKRGKQAPAISPIALEAVKRIDALFDIERSINGLPASER  386
             A CWAHARR++ ++           +    S+++ EA+ +I+ L+ IE  I G+PA +R
Sbjct  327  EAACWAHARRKIHDV-----------HVRIPSALTEEALEQIGQLYAIEADIRGMPAEQR  375

Query  387  LRVRQKQSAPLLADLKT  403
            L  RQ+++ PLL  L +
Sbjct  376  LAERQRKTKPLLKSLES  392


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 26/54 (49%), Positives = 43/54 (80%), Gaps = 0/54 (0%)

Query  463  LFAGSDRGADRAAFMMTMIMTAKLNGIDPMAWLADVLARIAGQPQSRLHELLPW  516
            LF GS++G++R+A++ ++I T KLN++DP + L +VL+ IA+ P +R+ ELLPW
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

397) Rvan_2050 in NC_014664


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  230 bits (858),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 157/377 (42%), Positives = 243/377 (65%), Gaps = 24/377 (6%)

Query  30   IAHLRLEIEKLRRVLYGSRSEHKarlleqmelqleeletaaaedellaetatartQGTPS  89
            I HL+ +++KLRR+ +GSRSE          +   E +    + E  + T+     +   
Sbjct  37   IDHLQAQLDKLRRMNFGSRSEK-----VSRRIAQMEADLNRLQKESDTLTGRVYDPAVQR  91

Query  90   STRKHPSRKPFPAHLPR-ERVVLPAPTCCPSCGSTKLSKLGEDVTETLEVVPRRWKVIQT  148
            + R+  +RKPFP  LPR E+ +LPA+ CCP+CG++ LS LGED +E LE++    +VI+T
Sbjct  92   PLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGS-LSYLGEDTAEQLELMRSAFRVIRT  150

Query  149  VREKFSCRCCEAIAQPPAPFHATPRGFAGPGLLAMILFEKFGQHQPLNRQSERYAREGVE  208
            VREK +C  C++I Q+PAP ++  RG+AGPGLLA +L  K+++H PL  QSE Y+R+GVE
Sbjct  151  VREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVE  210

Query  209  LSVSTLADQVGSCMAALQPLQALIEAHVLSAERLFGDDTTVPILAKG--KTVTGRIWTYV  266
            LS S L++ V++C   L PL+  +++ V++  +L +DDT V +L  G  KT TGR+W+YV
Sbjct  211  LSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYV  270

Query  267  RDDRPFGGTAPPAALYYASRDRRQEHPESHLRDFAGILQADAYSGYNGLYDPAREKGAIV  326
            R+DR  G++ +PA  +  S DR+  HP++HL  F+G+LQADAY+G+N LY     +G+I 
Sbjct  271  RNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELY----RNGGIT  326

Query  327  SALCWAHARRQFFELADIAANAKRGKQAPAISPIALEAVKRIDALFDIERSINGLPASER  386
             A CWAHARR++ ++           +    S+++ EA+ +I+ L+ IE  I G+PA +R
Sbjct  327  EAACWAHARRKIHDV-----------HVRIPSALTEEALEQIGQLYAIEADIRGMPAEQR  375

Query  387  LRVRQKQSAPLLADLKT  403
            L  RQ+++ PLL  L +
Sbjct  376  LAERQRKTKPLLKSLES  392


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 26/54 (49%), Positives = 43/54 (80%), Gaps = 0/54 (0%)

Query  463  LFAGSDRGADRAAFMMTMIMTAKLNGIDPMAWLADVLARIAGQPQSRLHELLPW  516
            LF GS++G++R+A++ ++I T KLN++DP + L +VL+ IA+ P +R+ ELLPW
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

398) Rvan_2449 in NC_014664


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  230 bits (858),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 157/377 (42%), Positives = 243/377 (65%), Gaps = 24/377 (6%)

Query  30   IAHLRLEIEKLRRVLYGSRSEHKarlleqmelqleeletaaaedellaetatartQGTPS  89
            I HL+ +++KLRR+ +GSRSE          +   E +    + E  + T+     +   
Sbjct  37   IDHLQAQLDKLRRMNFGSRSEK-----VSRRIAQMEADLNRLQKESDTLTGRVYDPAVQR  91

Query  90   STRKHPSRKPFPAHLPR-ERVVLPAPTCCPSCGSTKLSKLGEDVTETLEVVPRRWKVIQT  148
            + R+  +RKPFP  LPR E+ +LPA+ CCP+CG++ LS LGED +E LE++    +VI+T
Sbjct  92   PLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGS-LSYLGEDTAEQLELMRSAFRVIRT  150

Query  149  VREKFSCRCCEAIAQPPAPFHATPRGFAGPGLLAMILFEKFGQHQPLNRQSERYAREGVE  208
            VREK +C  C++I Q+PAP ++  RG+AGPGLLA +L  K+++H PL  QSE Y+R+GVE
Sbjct  151  VREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVE  210

Query  209  LSVSTLADQVGSCMAALQPLQALIEAHVLSAERLFGDDTTVPILAKG--KTVTGRIWTYV  266
            LS S L++ V++C   L PL+  +++ V++  +L +DDT V +L  G  KT TGR+W+YV
Sbjct  211  LSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYV  270

Query  267  RDDRPFGGTAPPAALYYASRDRRQEHPESHLRDFAGILQADAYSGYNGLYDPAREKGAIV  326
            R+DR  G++ +PA  +  S DR+  HP++HL  F+G+LQADAY+G+N LY     +G+I 
Sbjct  271  RNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELY----RNGGIT  326

Query  327  SALCWAHARRQFFELADIAANAKRGKQAPAISPIALEAVKRIDALFDIERSINGLPASER  386
             A CWAHARR++ ++           +    S+++ EA+ +I+ L+ IE  I G+PA +R
Sbjct  327  EAACWAHARRKIHDV-----------HVRIPSALTEEALEQIGQLYAIEADIRGMPAEQR  375

Query  387  LRVRQKQSAPLLADLKT  403
            L  RQ+++ PLL  L +
Sbjct  376  LAERQRKTKPLLKSLES  392


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 26/54 (49%), Positives = 43/54 (80%), Gaps = 0/54 (0%)

Query  463  LFAGSDRGADRAAFMMTMIMTAKLNGIDPMAWLADVLARIAGQPQSRLHELLPW  516
            LF GS++G++R+A++ ++I T KLN++DP + L +VL+ IA+ P +R+ ELLPW
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

399) Rvan_2671 in NC_014664


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  230 bits (858),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 157/377 (42%), Positives = 243/377 (65%), Gaps = 24/377 (6%)

Query  30   IAHLRLEIEKLRRVLYGSRSEHKarlleqmelqleeletaaaedellaetatartQGTPS  89
            I HL+ +++KLRR+ +GSRSE          +   E +    + E  + T+     +   
Sbjct  37   IDHLQAQLDKLRRMNFGSRSEK-----VSRRIAQMEADLNRLQKESDTLTGRVYDPAVQR  91

Query  90   STRKHPSRKPFPAHLPR-ERVVLPAPTCCPSCGSTKLSKLGEDVTETLEVVPRRWKVIQT  148
            + R+  +RKPFP  LPR E+ +LPA+ CCP+CG++ LS LGED +E LE++    +VI+T
Sbjct  92   PLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGS-LSYLGEDTAEQLELMRSAFRVIRT  150

Query  149  VREKFSCRCCEAIAQPPAPFHATPRGFAGPGLLAMILFEKFGQHQPLNRQSERYAREGVE  208
            VREK +C  C++I Q+PAP ++  RG+AGPGLLA +L  K+++H PL  QSE Y+R+GVE
Sbjct  151  VREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVE  210

Query  209  LSVSTLADQVGSCMAALQPLQALIEAHVLSAERLFGDDTTVPILAKG--KTVTGRIWTYV  266
            LS S L++ V++C   L PL+  +++ V++  +L +DDT V +L  G  KT TGR+W+YV
Sbjct  211  LSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYV  270

Query  267  RDDRPFGGTAPPAALYYASRDRRQEHPESHLRDFAGILQADAYSGYNGLYDPAREKGAIV  326
            R+DR  G++ +PA  +  S DR+  HP++HL  F+G+LQADAY+G+N LY     +G+I 
Sbjct  271  RNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELY----RNGGIT  326

Query  327  SALCWAHARRQFFELADIAANAKRGKQAPAISPIALEAVKRIDALFDIERSINGLPASER  386
             A CWAHARR++ ++           +    S+++ EA+ +I+ L+ IE  I G+PA +R
Sbjct  327  EAACWAHARRKIHDV-----------HVRIPSALTEEALEQIGQLYAIEADIRGMPAEQR  375

Query  387  LRVRQKQSAPLLADLKT  403
            L  RQ+++ PLL  L +
Sbjct  376  LAERQRKTKPLLKSLES  392


 Score = 46.3 bits (156),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 26/54 (49%), Positives = 43/54 (80%), Gaps = 0/54 (0%)

Query  463  LFAGSDRGADRAAFMMTMIMTAKLNGIDPMAWLADVLARIAGQPQSRLHELLPW  516
            LF GS++G++R+A++ ++I T KLN++DP + L +VL+ IA+ P +R+ ELLPW
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

400) C770_GR4pD0944 in NC_019849


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  230 bits (857),  Expect = 2e-61, Method: Compositional matrix adjust.
 Identities = 158/385 (42%), Positives = 254/385 (66%), Gaps = 23/385 (5%)

Query  47   IARLRLEIEKLKRDIHGSRSDRKARlleqmelqleeleadagedelaaemaaKSATVRTF  106
            I +L+ +++KL+R   GSRS++ +R + QME +L+ L+ +++           +A  R +
Sbjct  37   IDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVY---DPAVQRPL  93

Query  107  ERKRPSRKPFPEHLPR-ERVVLAAPSNCPCCGSAKLSKLGEDITETLEVIPRQWKVIQTV  165
             + R +RKPFPE LPR E+ +L+A++ CP CG++ LS LGED +E LE++    +VI+TV
Sbjct  94   RQTR-TRKPFPESLPRDEKRLLPAAPCCPNCGGS-LSYLGEDTAEQLELMRSAFRVIRTV  151

Query  166  REKFTCRECEKITQPPAPFHVTPRGFAGPNLLAMILFEKFGQHQPLNRQSERYAREGIDL  225
            REK +C +C+ I Q+PAP +   RG+AGP LLA +L  K+++H PL  QSE Y+R+G++L
Sbjct  152  REKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVEL  211

Query  226  SLSTLADQVGACAAALKPVHALIEAHVLAAERLHGDDTTVPILAKG--KTDTGRIWTYVR  283
            S S L++ V+AC   L P++  +++ V++  +LH+DDT V +L  G  KT TGR+W+YVR
Sbjct  212  SRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVR  271

Query  284  DDRPFGGQSPPAALYYASRDRRQEHPERHLKNFAGFLQADAYGGYNPLFKVDRDPVPLTQ  343
            +DR  G+  +PA  +  S DR+  HP+ HL  F+G LQADAY+G+N L++ +     +T+
Sbjct  272  NDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYRNG----GITE  327

Query  344  ALCWAHSRRKFFVLADIASNAKRGKNAAAISPVALEAVKRIDALFEIERDINGLSASERL  403
            A CWAH+RRK+        +  + + ++A++  ALE   +I+ L+ IE DI G++A +RL
Sbjct  328  AACWAHARRKI--------HDVHVRIPSALTEEALE---QIGQLYAIEADIRGMPAEQRL  376

Query  404  QRRQKDSRPLVDELQTWLRSERTKL  428
              RQ+ ++PL+  L++WLR     L
Sbjct  377  AERQRKTKPLLKSLESWLREKMKTL  401


 Score = 54.7 bits (188),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 28/54 (52%), Positives = 44/54 (82%), Gaps = 0/54 (0%)

Query  479  LFAGSDRGADRAAFMTTLITSAKLNDVDPQAWLADVLARIADTPITRLEQLLPW  532
            LF GS++G++R+A++ +LI + KLNDVDP++ L +VL+ IAD P+ R+ +LLPW
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

401) Caul_5388 in NC_010333


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  229 bits (852),  Expect = 4e-61, Method: Compositional matrix adjust.
 Identities = 164/400 (41%), Positives = 260/400 (65%), Gaps = 29/400 (7%)

Query  61   IAHLKLQIQKLNRERFGPSSERTARlldqlelqleeleASATEDELAAEMAAARTTTVAA  120
            I HL+ Q++KL R  FG+ SE+ +R + Q+E +L+ L+  +  D L++ +  +   +V  
Sbjct  37   IDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKES--DTLTGRVYDP---AVQR  91

Query  121  FSRKRPSRQPFPEHLPR-ERVIVPGPTACACCGGLRLSKLGEDVTETLEVVPRSWKVIAH  179
              R+  +R+PFPE LPR E+ ++P++  C+ CGG  LS LGED +E LE++  + +VI  
Sbjct  92   PLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGG-SLSYLGEDTAEQLELMRSAFRVIRT  150

Query  180  VREKFSCRDCEAIGQAPAPFHVIARGWAGPSLLAMILFEKFGQHQPLNRQADRYAREGVP  239
            VREK +C +C++I QAPAP + I RG AGP+LLA +L  K+++H PL  Q++ Y+R+GV 
Sbjct  151  VREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVE  210

Query  240  LSLSTLADQVGACTAVLAPLFQRLEAHVLAAERLHGDDTTVPVLAKG--KTDTARLWVYV  297
            LS S L++ V+AC  +L+PL + L++ V++  +LH+DDT V VL  G  KT T+RLW YV
Sbjct  211  LSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYV  270

Query  298  RDDKPFAGSAPPGAVFYYSRDRGGEHPQAHLSGYAGLFQADAYGGYGKLYEPGRNPGPIL  357
            R+D+  +++ +P+  F YS DR + HPQ+HL+ ++G++QADAY+G+  LY      G I 
Sbjct  271  RNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELY----RNGGIT  326

Query  358  EAACWAHARRPFFVLADLEQNARRKARGAAPAVISPIALEMVQRIDALFEIERGISGQDA  417
            EAACWAH              ARRK ++    + S+++ E +++I+ L+ IE +I G  A
Sbjct  327  EAACWAH--------------ARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPA  372

Query  418  DRRLAVRQALSAPLVAEMEIWMREQRAKL--SRGHDLARA  455
            ++RLA RQ  + PL+  +E W+RE+   L  + GH+  R+
Sbjct  373  EQRLAERQRKTKPLLKSLESWLREKMKTLFFGSGHGGERG  412


 Score = 56.1 bits (193),  Expect = 5e-09, Method: Compositional matrix adjust.
 Identities = 30/54 (56%), Positives = 45/54 (84%), Gaps = 0/54 (0%)

Query  497  LFCGSDRGGQRAAVMYSLIVTAKLNDIDPQAWLADVLARIAEHPSQQLDELLPW  550
            LF GS++GG+R+A++YSLI T KLND+DP++ L +VL+ IA+ P +++ ELLPW
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

402) RHE_PA00101 in NC_007762


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  227 bits (845),  Expect = 1e-60, Method: Compositional matrix adjust.
 Identities = 159/389 (41%), Positives = 250/389 (65%), Gaps = 30/389 (7%)

Query  36   VTTSEAMIRHLKLEIAKIRREQYGQSSERRARLIEQMKLQLQeleadatedeiaaeRVAT  95
            ++  E  I HL+ ++ K+RR ++G  SE+ +R I QM  +L+ L+ ++         ++ 
Sbjct  30   LSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDT-------LTG  82

Query  96   RI--TNVSAFERRRPARKPFPEHLPRE--RLVIDAPSTCTCCGSPRIVKMGEDITETLEI  151
            R+    V    R+  +RKPFPE LPR+  RL+  AP  C  CG++ +  +GED +E LE+
Sbjct  83   RVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPC-CPNCGGS-LSYLGEDTAEQLEL  140

Query  152  IPRQWKVIQTVREKFTCRDCEKISQPPAPFHATPRGWAGPHLLATILFEKFGQHQPLNRQ  211
            +    +VI+TVREK +C +C+ I Q+PAP ++  RG AGP LLA +L  K+++H PL  Q
Sbjct  141  MRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQ  200

Query  212  AERYAREGVALSLSTLADQVGACTTALQPIHDLIRAHVLAAERLHGDDTTVPLLARGA--  269
            +E Y+R+GV LS S L++ V+AC   L P+++ +++ V++  +LH+DDT V +L  G   
Sbjct  201  SEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKK  260

Query  270  TKQARLWTYVRDDRPFaggappaaLFHFSPDREKTHPNTHLAGWHGTLQADAYGGYNDLY  329
            TK +RLW+YVR+DR  +++ +PA  F +SPDR   HP+THLA   G LQADAY+G+N+LY
Sbjct  261  TKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELY  320

Query  330  RVDRRPALVISALCWSHARRKFFELADIAGNVRKGKPAHEISPVALEAVARIDALFDIER  389
                R + +  A CW+HARRK+ ++     +VR        S+++ EA+ +I+ L+ IE 
Sbjct  321  ----RNGGITEAACWAHARRKIHDV-----HVRIP------SALTEEALEQIGQLYAIEA  365

Query  390  GINGMPAEDRLAARLQHARPLVEELHDWL  418
            +I GMPAE+RLA R + ++PL+  L+ WL
Sbjct  366  DIRGMPAEQRLAERQRKTKPLLKSLESWL  394


 Score = 57.9 bits (200),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 30/57 (53%), Positives = 48/57 (85%), Gaps = 0/57 (0%)

Query  479  LFAGSQRGGERAAFMYSLIVTAKMNDIDPQAWLADVLARMPGIPVSRLPELLPWNLP  535
            LF GS +GGER+A++YSLI T K+ND+DP++ L +VL+ +++ PV+R++ELLPW ++
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWRIA  457

403) AZL_a06260 in NC_013855


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  226 bits (841),  Expect = 3e-60, Method: Compositional matrix adjust.
 Identities = 174/386 (46%), Positives = 252/386 (66%), Gaps = 13/386 (3%)

Query  45   EGIKSKALEIEKLKLQLARLRRMHFGQSSEKLGRTIaqlelaledleaaegeqaaIVTQP  104
            E + ++  EI+ L+ QL +LRRM+FG  SEK++R IAQ+E  L+ L+   +  ++ V +P
Sbjct  28   EKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDP  87

Query  105  DAPPEDAETRRRPKRTLPPEHLPREEQVHEPEggtctcaqcggaLRRLGEDRARQLEYVP  164
                   +TR R  + +P E LPR+E+   P +  C     +  L  LGED A QLE + 
Sbjct  88   AVQRPLRQTRTR--KPFP-ESLPRDEKRLLPAAPCCPNCGGS--LSYLGEDTAEQLELMR  142

Query  165  AHFKVVEHVRPKFSCRRCEAITQAPA-SLPIERGLFGPGLLAHLLVSKFDDHLPLYRQAE  223
            + F+V+  VR K +C +C++I QAPA S PIERG+ GPGLLA++L SK+ +H PLY Q+E
Sbjct  143  SAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSE  202

Query  224  IFARLGLELSRSTLADQVGHAARLLRPLIQAIETSVIGSAKLHADDTPVPVLSPGAGRTK  283
            I++R G+ELSRS L++ V+   RLL PL +A++  V+  +KLHADDTPV VL PG  +TK
Sbjct  203  IYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTK  262

Query  284  TGYLWVYLRDDRPWNGPSPPAALYRYSPGRGGEHPCGHLKDFHGALQADGYAGFNGLYEP  343
            TG LW Y+R+DR   ++ +PA  + YSP+R + HP  HL  F G LQAD+YAGFN LY  
Sbjct  263  TGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYRN  322

Query  344  GPDGRARIIEIGCMAHGRRKFNDVAVSAKGKAPIAAEALRRIGELYAVEAQIAGRDADER  403
            G      I E +C AH+RRK++DV V  +  ++++ EAL +IG+LYA+EA+I G  A++R
Sbjct  323  GG-----ITEAACWAHARRKIHDVHV--RIPSALTEEALEQIGQLYAIEADIRGMPAEQR  375

Query  404  RRVRQaeaapkmaalkaWLEETLGRL  429
               RQ  + P + +L +WL E +  L
Sbjct  376  LAERQRKTKPLLKSLESWLREKMKTL  401


 Score = 62.6 bits (218),  Expect = 5e-11, Method: Compositional matrix adjust.
 Identities = 31/54 (58%), Positives = 45/54 (84%), Gaps = 0/54 (0%)

Query  480  LFAGADVGGERAAAMYTLIETAKLNGLDPEAYLRDVIARIADHKISRIDELLPW  533
            LF G++ GGER+A +Y+LI T KLN++DPE+YLR+V++ IAD  ++R+ ELLPW
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

404) amb3325 in NC_007626


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  225 bits (840),  Expect = 3e-60, Method: Compositional matrix adjust.
 Identities = 167/401 (42%), Positives = 245/401 (62%), Gaps = 31/401 (7%)

Query  3    RAKAADDQAVIAHQKLQIEKLNRALYGPRAERTARLIDQMELVFEELA-ASATEDEIAAE  61
            + K ++ +  I H + Q++KL R  +G+R+E+ +R I QME  ++ L   S T      +
Sbjct  27   QEKLSNREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYD  86

Query  62   QAVAKTTNVVAFTRQRPARKPFPDHLPRE--RLVEPAPTTCSCCGSDRLRKLGEDVTETL  119
             AV +        RQ  +RKPFP+ LPR+  RL+ PA+  C+ CG+  L  LGED +E L
Sbjct  87   PAVQRPL------RQTRTRKPFPESLPRDEKRLL-PAAPCCPNCGGS-LSYLGEDTAEQL  138

Query  120  EVIPRQWKVIQRVREKFTCRDCEKISQAPAPFHVTPRGWAGPSLLAMILFEKFGQHQPLN  179
            E++    +VI+ VREK +C +C+ I QAPAP +   RG AGP+LLA +L  K+++H PL 
Sbjct  139  ELMRSAFRVIRTVREKHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLY  198

Query  180  RQAERYAKEGVPLSLSTLADQVGAGCAVLEPLIRRIEAHVFAAGRLHGDDTTVPVLAKG-  238
             Q+E Y+++GV LS S L++ V+A C +L PL   +++ V + G+LH+DDT V VL  G 
Sbjct  199  CQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGN  258

Query  239  -KTDTGRCWVYVRDDRPFGGpappaaMFYYSRDRGGEHPQGHLASYAGLFQADAYGGYAK  297
             KT TGR W YVR+DR  G++ +PA  F YS DR + HPQ HLA ++G++QADAY+G+  
Sbjct  259  KKTKTGRLWAYVRNDRNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNE  318

Query  298  VYAPDRKPGPILEAACWVHARRPFFIMADLAENARRKARGKTTAPVSPLALEAVQRIDAL  357
            +Y    + G I EAACW H              ARRK ++      S+L+ EA+++I+ L
Sbjct  319  LY----RNGGITEAACWAH--------------ARRKIHDVHVRIPSALTEEALEQIGQL  360

Query  358  FEIERAINGQTAEQRRAIRLEQSAPLVADLEIWMREQRAKL  398
            + IE  I G  AEQR A R  ++ PL+  LE W+RE+   L
Sbjct  361  YAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKTL  401


 Score = 55.8 bits (192),  Expect = 5e-09, Method: Compositional matrix adjust.
 Identities = 29/54 (54%), Positives = 44/54 (82%), Gaps = 0/54 (0%)

Query  449  LFAGSDRGGQRAAAMYSMIVTAKMNDIDPQAWLADVLARIAGHSANRIDELLPW  502
            LF GS++GG+R+A +YS+I T K+ND+DP++ L +VL+ IA+ + NR+ ELLPW
Sbjct  401  LFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPW  454

405) Rvan_2476 in NC_014664


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  225 bits (838),  Expect = 5e-60, Method: Compositional matrix adjust.
 Identities = 154/382 (41%), Positives = 241/382 (64%), Gaps = 10/382 (2%)

Query  53   LRQLRRAQFGRKSEKLDPDQLSLAMEETEQAIAETGATDETSNATLKASRKGPRSVNRGA  112
            L +LRR +FG +SEK+      +  +           T+   +++++ + +  R+  R +
Sbjct  44   LDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVYDPAVQRPLRQTRT--RKP  101

Query  113  LPSHLPREEIVIEPESTACPCCGGAMHVMGEDRSERLDVIPAQFKVIVTRRPKYACRACE  172
            +P  LPR+E  + P +  CP CGG++  +GED +E+L+++ + F+VI T R K AC  C+
Sbjct  102  FPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQCD  161

Query  173  GAVFQARAPTRLIEAGIPTEALVAHVLTAKYADHCPLYRQAQIYRRQGVDLDRSTLADWV  232
              V QA AP+R IE GI+  +L+A+VLT+KYA+H PLY Q++IY RQGV+L RS L++WV
Sbjct  162  TIV-QAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSRSLLSGWV  220

Query  233  GKAAALLAPLQTRLFEILKTSPKLFADETRCPVLDPGRKRVKLGQLWAYARDDRPWGGSD  292
            +    LL+PL+  L   + T  KL AD+T   VL PG K+ K G+LWAY R+DR  G++ 
Sbjct  221  DACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRNDRNAGSAL  280

Query  293  PPAVVYCYAPGRGSEHVKSHLAGFSGILQVDGYSAYKDLASNRPASAPLILSFCWTHLRR  352
            +PAV + Y+P+R S H ++HLA FSG+LQ D+Y+++++L  N   + +     CW+H RR
Sbjct  281  APAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNELYRNGGITEAA----CWAHARR  336

Query  353  RFYEIAVGGNapladaalaqiaalYKIEETIRGQSAEARRKVRQAKSMPLLDRFKSWFE-  411
            ++ ++ V   ++L++ AL QI+ LY IE  IRG +AE R   RQ K+ PLL  + SW+  
Sbjct  337  KIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLRE  396

Query  412  --KTLSLVPGGSKMAKAIRYAL  431
              KTL + +G +    A+ Y+L
Sbjct  397  KMKTLFFGSGHGGERGALLYSL  418


 Score = 51.6 bits (176),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 24/64 (38%), Positives = 49/64 (77%), Gaps = 1/64 (1%)

Query  463  NRKNALFAGHDRGAEHWGIVASLIETAKLNGVDPQAWLASILSRLVNGWPMRKIDELMPW  522
            ++ ++LF G ++G+E+ +++ SLI T KLN+VDP++ L  +L+ ++ +WP+ ++ EL+PW
Sbjct  396  EKMKTLFFGSGHGGERGALLYSLIGTCKLNDVDPESYLRHVLG-VIADWPVNRVSELLPW  454

Query  523  AFAV  526
             +A+
Sbjct  455  RIAL  458

406) Xaut_4817 in NC_009717


> AF326777|46|G34|15808731|AAL08460.1|Shigella_flexneri_2a_YSH6000|-|46770..48155|-|-|unknown
Length=461

 Score =  212 bits (790),  Expect = 3e-56, Method: Compositional matrix adjust.
 Identities = 155/383 (41%), Positives = 249/383 (66%), Gaps = 23/383 (6%)

Query  39   HLRLTIEKLRRELFGRSSERKARLLEQMELRledleatatedelaaeKVGGDAAVPTTHR  98
            HL+  ++KLRR  FG  SE+ +R + QME  L+ L+  +            D+AV    R
Sbjct  39   HLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTLTGRVY----DPAVQRPLR  94

Query  99   RRPARKPFPAHLPR-ERILLPAPEACPCCGSTKLSKLGEDITETLEVIPRRWKVVQTVRE  157
            +  +RKPFP  LPR E+ LLPA+  CP CG++ LS LGED +E LE++    +V++TVRE
Sbjct  95   QTRTRKPFPESLPRDEKRLLPAAPCCPNCGGS-LSYLGEDTAEQLELMRSAFRVIRTVRE  153

Query  158  RFSCRACEAITQPPAPFHPTPRGFAGPNLLAMVLFEKFGQHQPLNRQSERYGREGIDLSV  217
            + +C  C++I Q+PAP +P  RG+AGP LLA VL  K+++H PL  QSE YGR+G++LS 
Sbjct  154  KHACTQCDTIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYCQSEIYGRQGVELSR  213

Query  218  STLADQVGICTTVLAPLHDLIAQHVLAAARIHADETTVPILAKGG--TVTGHVWAYVRDD  275
            S L++ V+ C  +L+PL++ +   V++ +++HAD+T V +L  G   T TG++WAYVR+D
Sbjct  214  SLLSGWVDACCRLLSPLEEALHGYVMTDGKLHADDTPVQVLLPGNKKTKTGRLWAYVRND  273

Query  276  RPFAGPEPPAALFFatrnrrhehaarhlaaFSGIVQSDAYGAYDALGDPTRAAGAVTSGL  335
            R  +++ +PA  F  + +R+  H+  HLA FSG++Q+DAY++++ L       G++T + 
Sbjct  274  RNAGSALAPAVWFAYSPDRKSIHPQTHLACFSGVLQADAYAGFNEL----YRNGGITEAA  329

Query  336  CWAHARHQFFELADIAARVRRGRSAPPISPIAREAVERIDRLFAIERGINGCPPDERLAV  395
            CWAHAR++   + D+  R+         S+++ EA+E+I++L+AIE +I G P+++RLA 
Sbjct  330  CWAHARRK---IHDVHVRIP--------SALTEEALEQIGQLYAIEADIRGMPAEQRLAE  378

Query  396  RSEKSVAIVADLHAWLTEERARL  418
            R  K+ +++  L++WL E    L
Sbjct  379  RQRKTKPLLKSLESWLREKMKTL  401


 Score = 45.0 bits (151),  Expect = 9e-06, Method: Compositional matrix adjust.
 Identities = 24/39 (62%), Positives = 32/39 (83%), Gaps = 0/39 (0%)

Query  485  TLIVTAKMNDVDPQAWLAHVLGTIADIPQSRLADLLPWR  523
            +LI T K+NDVDP++ L HVLG IAD P +R+++LLPWR
Sbjct  417  SLIGTCKLNDVDPESYLRHVLGVIADWPVNRVSELLPWR  455