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Homologs of ssaS gene of NC_006905_P3

121

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) fliQ
( YP_008265619.1 )

flagellar biosynthesis protein FliQ

NC_021820
(Salmonella enterica 08-1736)

6e-27

100

2) ssaS
( YP_005237290.1 )

type III secretion system apparatus protein

NC_016856
(Salmonella enterica 14028S)

6e-27

100

3) SBOV14166
( YP_008505287.1 )

type III secretion system apparatus protein

NC_022241
(Salmonella enterica 3114)

6e-27

100

4) SEEH1578_16335
( YP_008247326.1 )

type III secretion system protein SsaS

NC_021810
(Salmonella enterica 41578)

6e-27

100

5) SSPA1331
( YP_002142170.1 )

type III secretion protein

NC_011147
(Salmonella enterica AKU12601)

6e-27

100

6) ssaS
( YP_150684.1 )

type III secretion protein

NC_006511
(Salmonella enterica ATCC 9150)

6e-27

100

7) SU5_02036
( YP_006087670.1 )

Type III secretion inner membrane protein

NC_017623
(Salmonella enterica B182)

6e-27

100

8) fliQ
( YP_008308802.1 )

flagellar biosynthesis protein FliQ

NC_021844
(Salmonella enterica CFSAN000189)

6e-27

100

9) fliQ
( YP_008255383.1 )

flagellar biosynthesis protein FliQ

NC_021814
(Salmonella enterica CFSAN001921)

6e-27

100

10) CFSAN001992_04490
( YP_007470656.1 )

type III secretion system protein SsaS

NC_020307
(Salmonella enterica CFSAN001992)

6e-27

100

11) fliQ
( YP_008260610.1 )

flagellar biosynthesis protein FliQ

NC_021818
(Salmonella enterica CFSAN002050)

6e-27

100

12) fliQ
( YP_008249240.1 )

flagellar biosynthesis protein FliQ

NC_021812
(Salmonella enterica CFSAN002069)

6e-27

100

13) SeSA_A1516
( YP_002114433.2 )

secretion system apparatus protein SsaS

NC_011094
(Salmonella enterica CVM19633)

6e-27

100

14) STMMW_14251
( YP_005232479.1 )

putative type III secretion protein

NC_016854
(Salmonella enterica D23580)

6e-27

100

15) ssaS
( NP_460385.1 )

type III secretion system apparatus protein

NC_003197
(Salmonella enterica LT2)

6e-27

100

16) ssaS
( YP_002243725.1 )

type III secretion protein

NC_011294
(Salmonella enterica P125109)

6e-27

100

17) ssaS
( YP_002637867.1 )

type III secretion protein

NC_012125
(Salmonella enterica RKS4594)

6e-27

100

18) fliQ
( YP_008380651.1 )

flagellar biosynthesis protein FliQ

NC_021984
(Salmonella enterica S06004)

6e-27

100

19) ssaS
( YP_216428.1 )

secretion system apparatus protein SsaS

NC_006905
(Salmonella enterica SC-B67)

6e-27

100

20) SPAB_01905
( YP_001588128.1 )

hypothetical protein

NC_010102
(Salmonella enterica SGSC4150; SPB7)

6e-27

100

21) ssaS
( YP_005181264.1 )

putative type III secretion protein

NC_016810
(Salmonella enterica SL1344)

6e-27

100

22) SeHA_C1553
( YP_002045423.2 )

secretion system apparatus protein SsaS

NC_011083
(Salmonella enterica SL476)

6e-27

100

23) ssaS
( YP_005242321.1 )

type III secretion system apparatus protein

NC_016857
(Salmonella enterica ST4/74)

6e-27

100

24) STMDT12_C14360
( YP_005247132.1 )

putative type III secretion protein

NC_016860
(Salmonella enterica T000240)

6e-27

100

25) STU288_03420
( YP_007901789.1 )

type III secretion system protein SsaS

NC_021151
(Salmonella enterica U288)

6e-27

100

26) ssaS
( YP_005251924.1 )

type III secretion system apparatus protein

NC_016863
(Salmonella enterica UK-1)

6e-27

100

27) ssaS
( YP_002226665.1 )

type III secretion protein

NC_011274
(Salmonella enterica 287/91)

7e-27

28) ssaS
( NP_456108.1 )

putative type III secretion protein

NC_003198
(Salmonella enterica CT18)

7e-27

29) ssaS
( NP_805091.1 )

type III secretion protein

NC_004631
(Salmonella enterica Ty2)

7e-27

30) TY21A_06545
( YP_007925613.1 )

putative type III secretion protein

NC_021176
(Salmonella enterica Ty21a)

7e-27

31) SARI_01562
( YP_001570598.1 )

hypothetical protein

NC_010067
(Salmonella enterica RSK2980)

1e-26

32) SG1306
( YP_454986.1 )

type III secretion apparatus

NC_007712
(Sodalis glossinidius morsitans)

2e-23

33) sctS
( NP_930978.1 )

Type III secretion component protein SctS

NC_005126
(Photorhabdus luminescens TTO1)

3e-12

34) ascS
( YP_001144303.1 )

AscS protein

NC_009350
(Aeromonas salmonicida A449)

4e-12

35) YE105_C0339
( YP_004296540.1 )

type III secretion system protein

NC_015224
(Yersinia enterocolitica 105.5R(r))

6e-12

36) Y11_35461
( YP_006007045.1 )

type III secretion inner membrane protein

NC_017564
(Yersinia enterocolitica Y11)

6e-12

37) sctS
( YP_003039884.1 )

type iii secretion component protein scts

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

4e-11

38) escS
( NP_902278.1 )

type III secretion apparatus protein EscS

NC_005085
(Chromobacterium violaceum ATCC 12472)

2e-09

39) ssaS
( YP_002924939.1 )

type III secretion system apparatus protein

NC_012751
(Candidatus Hamiltonella defensa T5A)

1e-08

40) YE105_P0027
( YP_004424929.1 )

putative type III secretion protein

NC_015475
(Yersinia enterocolitica 105.5R(r))

4e-08

41) yscS
( YP_001004083.1 )

putative type III secretion protein

NC_008791
(Yersinia enterocolitica 8081)

4e-08

42) Y11_p0731
( YP_006007921.1 )

type III secretion inner membrane protein

NC_017565
(Yersinia enterocolitica Y11)

4e-08

43) yscS
( NP_995366.1 )

type III secretion protein yscS YscS

NC_005813
(Yersinia pestis 91001)

4e-08

44) yscS
( YP_001604477.1 )

type III secretion apparatus protein YscS

NC_010157
(Yersinia pestis Angola)

4e-08

45) YPA_CD0017
( YP_636809.1 )

type III secretion protein

NC_008122
(Yersinia pestis Antiqua)

4e-08

46) yscS
( NP_395179.1 )

needle complex export protein

NC_003131
(Yersinia pestis CO92)

4e-08

47) YPDSF_3972
( YP_001154601.1 )

type III secretion protein

NC_009377
(Yersinia pestis Pestoides F)

4e-08

48) pYV0072
( YP_068481.1 )

yscS; type III secretion protein

NC_006153
(Yersinia pseudotuberculosis IP 32953)

4e-08

49) YPTS_4290
( YP_001874690.1 )

HrpO family type III secretion protein

NC_010635
(Yersinia pseudotuberculosis PB1/+)

4e-08

50) HCH_03262
( YP_434446.1 )

type III secretory pathway subunit EscS

NC_007645
(Hahella chejuensis KCTC 2396)

6e-08

51) yscS
( YP_436218.1 )

type III secretory pathway subunit EscS

NC_007645
(Hahella chejuensis KCTC 2396)

1e-07

52) yscS
( YP_594924.1 )

translocation protein in type III secretion

NC_008011
(Lawsonia intracellularis PHE/MN1-00)

2e-07

53) bscS
( YP_006967887.1 )

type III secretion protein

NC_019382
(Bordetella bronchiseptica 253)

2e-07

54) bscS
( YP_006899834.1 )

type III secretion protein

NC_018829
(Bordetella bronchiseptica MO149)

2e-07

55) bscS
( NP_888178.1 )

type III secretion protein

NC_002927
(Bordetella bronchiseptica RB50)

2e-07

56) bscS
( NP_884487.1 )

type III secretion protein

NC_002928
(Bordetella parapertussis 12822)

2e-07

57) bscS
( YP_006895377.1 )

type III secretion protein

NC_018828
(Bordetella parapertussis Bpp5)

2e-07

58) escS
( YP_003236102.1 )

T3SS structure protein EscS

NC_013364
(Escherichia coli 11128)

3e-07

59) escS
( YP_002331424.1 )

T3SS structure protein EscS

NC_011601
(Escherichia coli E2348/69)

3e-07

60) escS
( NP_290282.1 )

hypothetical protein

NC_002655
(Escherichia coli EDL933)

3e-07

61) ECO55CA74_21285
( YP_006161362.1 )

protein EscS

NC_017656
(Escherichia coli RM12579)

3e-07

62) ECs4582
( NP_312609.1 )

EscS

NC_002695
(Escherichia coli Sakai)

3e-07

63) escS
( YP_003080494.1 )

LEE-encoded type III secretion system factor

NC_013008
(Escherichia coli TW14359)

3e-07

64) CDCO157_4317
( YP_006315182.1 )

protein EscS

NC_017906
(Escherichia coli Xuzhou21)

3e-07

65) bscS
( YP_006625538.1 )

type III secretion protein

NC_018518
(Bordetella pertussis 18323)

3e-07

66) bscS
( YP_005590273.1 )

putative type III secretion protein

NC_017223
(Bordetella pertussis CS)

3e-07

67) bscS
( NP_880883.1 )

type III secretion protein

NC_002929
(Bordetella pertussis Tohama I)

3e-07

68) escS
( YP_003501888.1 )

EscS

NC_013941
(Escherichia coli CB9615)

3e-07

69) NH44784_014531
( YP_008028548.1 )

Type III secretion inner membrane protein (YscS,homologous to flagellar export components

NC_021285
(Achromobacter xylosoxidans NH44784-1996)

4e-07

70) sctS
( YP_007365650.1 )

type III secretion system protein

NC_020127
(Lawsonia intracellularis N343)

4e-07

71) Dvul_3009
( YP_961208.1 )

HrpO family type III secretion protein

NC_008741
(Desulfovibrio vulgaris DP4)

6e-07

72) invX
( YP_009143.1 )

HrpO family type III secretion protein

NC_005863
(Desulfovibrio vulgaris Hildenborough)

6e-07

73) Deval_3199
( YP_005703978.1 )

type III secretion protein, HrpO family

NC_017311
(Desulfovibrio vulgaris RCH1)

6e-07

74) DvMF_2414
( YP_002436823.1 )

type III secretion protein, HrpO family

NC_011769
(Desulfovibrio vulgaris Miyazaki F)

7e-07

75) escS
( YP_003232139.1 )

T3SS structure protein EscS

NC_013361
(Escherichia coli 11368)

1e-06

76) escS
( YP_003223489.1 )

T3SS structure protein EscS

NC_013353
(Escherichia coli 12009)

1e-06

77) PSE_4077
( YP_005082603.1 )

flagellar biosynthesis protein FliQ

NC_016642
(Pseudovibrio sp. FO-BEG1)

3e-06

78) fliQ
( YP_002955998.1 )

flagellar biosynthetic protein FliQ

NC_012796
(Desulfovibrio magneticus RS-1)

8e-06

79) fliQ
( YP_004832776.1 )

flagellar biosynthesis protein FliQ

NC_015975
(Lactobacillus ruminis ATCC 27782)

2e-05

80) fliQ
( YP_005718868.1 )

flagellar biosynthesis protein

NC_017325
(Sinorhizobium meliloti SM11)

2e-05

81) CPE3_0899
( YP_008584030.1 )

type III secretion system protein

NC_022441
(Chlamydia pecorum P787)

3e-05

82) CPE1_0898
( YP_008582180.1 )

type III secretion system protein

NC_022439
(Chlamydia pecorum PV3056/3)

3e-05

83) CPE2_0899
( YP_008583105.1 )

type III secretion system protein

NC_022440
(Chlamydia pecorum W73)

3e-05

84) fliQ
( NP_104165.1 )

flagellar biosynthesis protein FliQ

NC_002678
(Mesorhizobium loti MAFF303099)

4e-05

85) CP1047
( NP_445584.1 )

type III secretion inner membrane protein SctS

NC_002179
(Chlamydophila pneumoniae AR39)

4e-05

86) yscS
( NP_225019.1 )

Yop proteins translocation protein S

NC_000922
(Chlamydophila pneumoniae CWL029)

4e-05

87) yscS
( NP_300881.1 )

YopS translocation protein

NC_002491
(Chlamydophila pneumoniae J138)

4e-05

88) CPK_ORF00232
( YP_005662607.1 )

putative Yop translocation protein S

NC_017285
(Chlamydophila pneumoniae LPCoLN)

4e-05

89) CpB0853
( NP_877125.1 )

translocation protein S

NC_005043
(Chlamydophila pneumoniae TW-183)

4e-05

90) Anamo_0280
( YP_006443265.1 )

flagellar biosynthetic protein FliQ

NC_018024
(Anaerobaculum mobile DSM 13181)

5e-05

91) Veis_1125
( YP_995915.1 )

flagellar biosynthetic protein FliQ

NC_008786
(Verminephrobacter eiseniae EF01-2)

5e-05

92) H650_09080
( YP_008107642.1 )

flagellar biosynthesis protein FliQ

NC_021500
(Enterobacter sp. R4-368)

6e-05

93) Mesau_01994
( YP_007303814.1 )

flagellar biosynthetic protein FliQ

NC_019973
(Mesorhizobium australicum WSM2073)

6e-05

94) Mesop_1988
( YP_004610563.1 )

flagellar biosynthetic protein FliQ

NC_015675
(Mesorhizobium opportunistum WSM2075)

6e-05

95) Despr_2237
( YP_004195672.1 )

flagellar biosynthetic protein FliQ

NC_014972
(Desulfobulbus propionicus DSM 2032)

1e-04

96) D781_3937
( YP_007346312.1 )

type III secretion protein, HrpO family

NC_020064
(Serratia marcescens FGI94)

2e-04

97) hrcS
( NP_791221.1 )

type III secretion protein HrcS

NC_004578
(Pseudomonas syringae DC3000)

2e-04

98) STAUR_3047
( YP_003952666.1 )

bacterial export protein fliq, family 3

NC_014623
(Stigmatella aurantiaca DW4/3-1)

2e-04

99) HBZC1_02740
( YP_004606972.1 )

flagellar biosynthesis protein FliQ

NC_015674
(Helicobacter bizzozeronii CIII-1)

3e-04

100) fliQ
( YP_663959.1 )

flagellar biosynthesis protein FliQ

NC_008229
(Helicobacter acinonychis Sheeba)

3e-04

101) fliQ
( YP_005771906.1 )

flagellar biosynthesis protein FliQ

NC_017361
(Helicobacter pylori SouthAfrica7)

4e-04

102) S58_72180
( YP_007516769.1 )

hypothetical protein

NC_020453
(Bradyrhizobium oligotrophicum S58)

5e-04

103) LILAB_19930
( YP_004666966.1 )

FliQ/MopD/SpaQ family protein

NC_015711
(Myxococcus fulvus HW-1)

0.001

104) escS
( YP_003366516.1 )

T3SS structural protein EscS

NC_013716
(Citrobacter rodentium ICC168)

0.001

105) GYMC10_4174
( YP_003244208.1 )

flagellar biosynthetic protein FliQ

NC_013406
(Paenibacillus sp. Y412MC10)

0.001

106) fliQ
( YP_005371583.1 )

FliQ/MopD/SpaQ family protein

NC_017030
(Corallococcus coralloides DSM 2259)

0.002

107) fliQ
( YP_672842.1 )

flagellar biosynthesis protein FliQ

NC_008254
(Chelativorans sp. BNC1)

0.002

108) MYSTI_02839
( YP_007359839.1 )

FliQ/MopD/SpaQ family protein

NC_020126
(Myxococcus stipitatus DSM 14675)

0.002

109) PSEBR_a5381
( YP_004356891.1 )

type III secretion protein

NC_015379
(Pseudomonas brassicacearum NFM421)

0.007

110) hrcS
( YP_005210968.1 )

protein HrcS

NC_016830
(Pseudomonas fluorescens F113)

0.007

111) fliQ
( YP_780484.1 )

flagellar biosynthesis protein FliQ

NC_008435
(Rhodopseudomonas palustris BisA53)

0.007

112) fliQ
( YP_001697295.1 )

flagellar biosynthetic protein

NC_010382
(Lysinibacillus sphaericus C3-41)

0.008

113) MXAN_2448
( YP_630668.1 )

FliQ/MopD/SpaQ family protein

NC_008095
(Myxococcus xanthus DK 1622)

0.010

114) fliQ
( YP_680668.1 )

flagellar biosynthetic protein FliQ

NC_008209
(Roseobacter denitrificans OCh 114)

0.026

115) fliQ
( YP_004693200.1 )

flagellar biosynthetic protein FliQ

NC_015730
(Roseobacter litoralis Och 149)

0.026

116) Rpdx1_1463
( YP_004107818.1 )

export protein FliQ family 3

NC_014834
(Rhodopseudomonas palustris DX-1)

0.031

117) fliQ
( YP_487379.1 )

flagellar biosynthesis protein FliQ

NC_007778
(Rhodopseudomonas palustris HaA2)

0.031

118) Meso_0111
( YP_672681.1 )

export protein FliQ

NC_008254
(Chelativorans sp. BNC1)

0.042

119) fliQ
( YP_568833.1 )

flagellar biosynthesis protein FliQ

NC_007958
(Rhodopseudomonas palustris BisB5)

0.047

120) fliQ
( NP_949222.1 )

flagellar biosynthesis protein FliQ

NC_005296
(Rhodopseudomonas palustris CGA009)

0.057

121) fliQ
( YP_001993379.1 )

flagellar biosynthesis protein FliQ

NC_011004
(Rhodopseudomonas palustris TIE-1)

0.057

• Sequence Alignments

1) fliQ in NC_021820


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score =  114 bits (414),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 88/88 (100%), Positives = 88/88 (100%), Gaps = 0/88 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88
           TLMVSYPWLSGILLNYTRQIMLRIGEHG
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88

2) fliQ in NC_021844


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score =  114 bits (414),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 88/88 (100%), Positives = 88/88 (100%), Gaps = 0/88 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88
           TLMVSYPWLSGILLNYTRQIMLRIGEHG
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88

3) SBOV14166 in NC_022241


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score =  114 bits (414),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 88/88 (100%), Positives = 88/88 (100%), Gaps = 0/88 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88
           TLMVSYPWLSGILLNYTRQIMLRIGEHG
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88

4) ssaS in NC_006905


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score =  114 bits (414),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 88/88 (100%), Positives = 88/88 (100%), Gaps = 0/88 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88
           TLMVSYPWLSGILLNYTRQIMLRIGEHG
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88

5) fliQ in NC_021818


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score =  114 bits (414),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 88/88 (100%), Positives = 88/88 (100%), Gaps = 0/88 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88
           TLMVSYPWLSGILLNYTRQIMLRIGEHG
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88

6) ssaS in NC_011294


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score =  114 bits (414),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 88/88 (100%), Positives = 88/88 (100%), Gaps = 0/88 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88
           TLMVSYPWLSGILLNYTRQIMLRIGEHG
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88

7) SEEH1578_16335 in NC_021810


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score =  114 bits (414),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 88/88 (100%), Positives = 88/88 (100%), Gaps = 0/88 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88
           TLMVSYPWLSGILLNYTRQIMLRIGEHG
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88

8) SU5_02036 in NC_017623


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score =  114 bits (414),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 88/88 (100%), Positives = 88/88 (100%), Gaps = 0/88 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88
           TLMVSYPWLSGILLNYTRQIMLRIGEHG
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88

9) fliQ in NC_021812


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score =  114 bits (414),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 88/88 (100%), Positives = 88/88 (100%), Gaps = 0/88 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88
           TLMVSYPWLSGILLNYTRQIMLRIGEHG
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88

10) SeHA_C1553 in NC_011083


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score =  114 bits (414),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 88/88 (100%), Positives = 88/88 (100%), Gaps = 0/88 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88
           TLMVSYPWLSGILLNYTRQIMLRIGEHG
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88

11) CFSAN001992_04490 in NC_020307


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score =  114 bits (414),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 88/88 (100%), Positives = 88/88 (100%), Gaps = 0/88 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88
           TLMVSYPWLSGILLNYTRQIMLRIGEHG
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88

12) SSPA1331 in NC_011147


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score =  114 bits (414),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 88/88 (100%), Positives = 88/88 (100%), Gaps = 0/88 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88
           TLMVSYPWLSGILLNYTRQIMLRIGEHG
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88

13) ssaS in NC_006511


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score =  114 bits (414),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 88/88 (100%), Positives = 88/88 (100%), Gaps = 0/88 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88
           TLMVSYPWLSGILLNYTRQIMLRIGEHG
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88

14) SPAB_01905 in NC_010102


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score =  114 bits (414),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 88/88 (100%), Positives = 88/88 (100%), Gaps = 0/88 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88
           TLMVSYPWLSGILLNYTRQIMLRIGEHG
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88

15) ssaS in NC_012125


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score =  114 bits (414),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 88/88 (100%), Positives = 88/88 (100%), Gaps = 0/88 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88
           TLMVSYPWLSGILLNYTRQIMLRIGEHG
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88

16) fliQ in NC_021984


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score =  114 bits (414),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 88/88 (100%), Positives = 88/88 (100%), Gaps = 0/88 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88
           TLMVSYPWLSGILLNYTRQIMLRIGEHG
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88

17) SeSA_A1516 in NC_011094


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score =  114 bits (414),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 88/88 (100%), Positives = 88/88 (100%), Gaps = 0/88 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88
           TLMVSYPWLSGILLNYTRQIMLRIGEHG
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88

18) ssaS in NC_016856


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score =  114 bits (414),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 88/88 (100%), Positives = 88/88 (100%), Gaps = 0/88 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88
           TLMVSYPWLSGILLNYTRQIMLRIGEHG
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88

19) STMMW_14251 in NC_016854


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score =  114 bits (414),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 88/88 (100%), Positives = 88/88 (100%), Gaps = 0/88 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88
           TLMVSYPWLSGILLNYTRQIMLRIGEHG
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88

20) ssaS in NC_003197


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score =  114 bits (414),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 88/88 (100%), Positives = 88/88 (100%), Gaps = 0/88 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88
           TLMVSYPWLSGILLNYTRQIMLRIGEHG
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88

21) ssaS in NC_016810


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score =  114 bits (414),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 88/88 (100%), Positives = 88/88 (100%), Gaps = 0/88 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88
           TLMVSYPWLSGILLNYTRQIMLRIGEHG
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88

22) ssaS in NC_016857


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score =  114 bits (414),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 88/88 (100%), Positives = 88/88 (100%), Gaps = 0/88 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88
           TLMVSYPWLSGILLNYTRQIMLRIGEHG
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88

23) STMDT12_C14360 in NC_016860


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score =  114 bits (414),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 88/88 (100%), Positives = 88/88 (100%), Gaps = 0/88 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88
           TLMVSYPWLSGILLNYTRQIMLRIGEHG
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88

24) STU288_03420 in NC_021151


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score =  114 bits (414),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 88/88 (100%), Positives = 88/88 (100%), Gaps = 0/88 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88
           TLMVSYPWLSGILLNYTRQIMLRIGEHG
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88

25) ssaS in NC_016863


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score =  114 bits (414),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 88/88 (100%), Positives = 88/88 (100%), Gaps = 0/88 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88
           TLMVSYPWLSGILLNYTRQIMLRIGEHG
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88

26) fliQ in NC_021814


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score =  114 bits (414),  Expect = 6e-27, Method: Compositional matrix adjust.
 Identities = 88/88 (100%), Positives = 88/88 (100%), Gaps = 0/88 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88
           TLMVSYPWLSGILLNYTRQIMLRIGEHG
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88

27) ssaS in NC_011274


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score =  113 bits (413),  Expect = 7e-27, Method: Compositional matrix adjust.
 Identities = 87/88 (99%), Positives = 88/88 (100%), Gaps = 0/88 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLMVSYPWLSGILLNYTRQIMLRVGEHG  88
           TLMVSYPWLSGILLNYTRQIMLR+GEHG
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88

28) ssaS in NC_003198


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score =  113 bits (413),  Expect = 7e-27, Method: Compositional matrix adjust.
 Identities = 87/88 (99%), Positives = 88/88 (100%), Gaps = 0/88 (0%)

Query  1   MNDSELTQFITQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           MNDSELTQF+TQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88
           TLMVSYPWLSGILLNYTRQIMLRIGEHG
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88

29) TY21A_06545 in NC_021176


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score =  113 bits (413),  Expect = 7e-27, Method: Compositional matrix adjust.
 Identities = 87/88 (99%), Positives = 88/88 (100%), Gaps = 0/88 (0%)

Query  1   MNDSELTQFITQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           MNDSELTQF+TQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88
           TLMVSYPWLSGILLNYTRQIMLRIGEHG
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88

30) ssaS in NC_004631


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score =  113 bits (413),  Expect = 7e-27, Method: Compositional matrix adjust.
 Identities = 87/88 (99%), Positives = 88/88 (100%), Gaps = 0/88 (0%)

Query  1   MNDSELTQFITQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAI  60
           MNDSELTQF+TQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88
           TLMVSYPWLSGILLNYTRQIMLRIGEHG
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88

31) SARI_01562 in NC_010067


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score =  112 bits (409),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 87/88 (99%), Positives = 87/88 (99%), Gaps = 0/88 (0%)

Query  1   MNDSELTQFVTQLLWIVLFTSMPvvlvasvvgvivslvQALTQIQDQTLQFMIKLLAIAT  60
           MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIA 
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88
           TLMVSYPWLSGILLNYTRQIMLRIGEHG
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88

32) SG1306 in NC_007712


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score =  102 bits (370),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 68/88 (78%), Positives = 82/88 (94%), Gaps = 0/88 (0%)

Query  1   MNDAALTHLVTQLMWIVLITSLPVVLVASAVGILVSLFQALTQIQDQTLQFMIKLLAVAI  60
           MND+ LT++VTQL+WIVL+TS+PVVLVAS VG++VSL QALTQIQDQTLQFMIKLLA+AI
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLMASYPWLGGILLGYTRQVLLQIGMRG  88
           TLM SYPWL+GILL YTRQ++L+IG +G
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGEHG  88

33) sctS in NC_005126


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 65.0 bits (227),  Expect = 3e-12, Method: Compositional matrix adjust.
 Identities = 39/86 (46%), Positives = 65/86 (76%), Gaps = 0/86 (0%)

Query  1   MSNADILHFTSQSLWLVLILSLPPVLMAAAVGTLVSLIQALTQIQEQTLGFVIKLIAVII  60
           M+++++ +F +Q LW+VL+ S+P VL+A+ VG +VSL+QALTQIQ+QTL F+IKL+A+ I
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLFATATWLGNELYSFANMTFLKVPQ  86
           TL  +  WL+  L +++    L++ +
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGE  86

34) ascS in NC_009350


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 65.0 bits (227),  Expect = 4e-12, Method: Compositional matrix adjust.
 Identities = 39/86 (46%), Positives = 68/86 (80%), Gaps = 0/86 (0%)

Query  1   MSHADILHFTSQALWLVLILSMPPVLVAALVGTLVSLLQALTQIQEQTLGFVAKLIAVVI  60
           M+++++ +F +Q LW+VL+ SMP VLVA++VG +VSL+QALTQIQ+QTL F+ KL+A+ I
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLFATTAWLGNELYSFANMVLFKVPQ  86
           TL  + +WL+  L +++  +++++ +
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGE  86

35) YE105_C0339 in NC_015224


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 64.2 bits (224),  Expect = 6e-12, Method: Compositional matrix adjust.
 Identities = 53/86 (62%), Positives = 75/86 (88%), Gaps = 0/86 (0%)

Query  1   MSNAIVVHLATQLLWIvlllsmpvvvvasvvgivvsllQALTQIQDQTLQFLIKLLAVSA  60
           M+++ + ++ TQLLWIVL+ SMPVV+VASVVG++VSL+QALTQIQDQTLQF+IKLLA++ 
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLLITYHWMGSTLLNYTQQTFLQITS  86
           TL+++Y W+++ LLNYT+Q  L+I  
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGE  86

36) Y11_35461 in NC_017564


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 64.2 bits (224),  Expect = 6e-12, Method: Compositional matrix adjust.
 Identities = 53/86 (62%), Positives = 75/86 (88%), Gaps = 0/86 (0%)

Query  1   MSNAIVVHLATQLLWIvlllsmpvvvvasvvgivvsllQALTQIQDQTLQFLIKLLAVSA  60
           M+++ + ++ TQLLWIVL+ SMPVV+VASVVG++VSL+QALTQIQDQTLQF+IKLLA++ 
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLLITYHWMGSTLLNYTQQTFLQITS  86
           TL+++Y W+++ LLNYT+Q  L+I  
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGE  86

37) M892_04540 in NC_022269


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 62.9 bits (219),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 42/86 (49%), Positives = 66/86 (77%), Gaps = 0/86 (0%)

Query  1   MNPAEIIHFTTQALTLVLFLSLPPILVAALVGTLVSLVQALTQVQEQTLGFVVKLIAVII  60
           MN +E+ +F TQ L +VLF S+P +LVA++VG +VSLVQALTQ+Q+QTL F++KL+A+ I
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLFVTTQWLGAELHSFATLTLGKIPQ  86
           TL V+  WL++ L +++   + +I +
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGE  86

38) VIBHAR_01725 in NC_009783


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 62.9 bits (219),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 42/86 (49%), Positives = 66/86 (77%), Gaps = 0/86 (0%)

Query  1   MNPAEIIHFTTQALTLVLFLSLPPILVAALVGTLVSLVQALTQVQEQTLGFVVKLIAVII  60
           MN +E+ +F TQ L +VLF S+P +LVA++VG +VSLVQALTQ+Q+QTL F++KL+A+ I
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLFVTTQWLGAELHSFATLTLGKIPQ  86
           TL V+  WL++ L +++   + +I +
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGE  86

39) N646_0741 in NC_022349


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 62.9 bits (219),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 40/86 (47%), Positives = 65/86 (76%), Gaps = 0/86 (0%)

Query  1   MHSAEIIHFTTQALTLVLYLSLPPILVAALVGTLVSLIQALTQVQEQTLGFVVKLIAVII  60
           M+ +E+ +F TQ L +VL+ S+P +LVA++VG +VSL+QALTQ+Q+QTL F++KL+A+ I
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLFVTTQWLGAELHAFASLAMDKIPQ  86
           TL V+  WL++ L  ++   M +I +
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGE  86

40) VEA_003361 in NC_013456


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 62.9 bits (219),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 40/86 (47%), Positives = 65/86 (76%), Gaps = 0/86 (0%)

Query  1   MHSAEIIHFTTQALTLVLYLSLPPILVAALVGTLVSLIQALTQVQEQTLGFVVKLIAVII  60
           M+ +E+ +F TQ L +VL+ S+P +LVA++VG +VSL+QALTQ+Q+QTL F++KL+A+ I
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLFVTTQWLGAELHAFASLAMDKIPQ  86
           TL V+  WL++ L  ++   M +I +
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGE  86

41) VPBB_1533 in NC_019955


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 62.1 bits (216),  Expect = 3e-11, Method: Compositional matrix adjust.
 Identities = 40/86 (47%), Positives = 65/86 (76%), Gaps = 0/86 (0%)

Query  1   MNPAEIIHFTTQALTLVLFLSLPPILVAALVGTLVSLIQALTQVQEQTLGFVVKLIAVII  60
           MN +E+ +F TQ L +VLF S+P +LVA++VG +VSL+QALTQ+Q+QTL F++KL+A+ I
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLFITTQWLGAELHAFASLALDKIPQ  86
           TL ++  WL++ L  ++   + +I +
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGE  86

42) M636_13700 in NC_021848


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 62.1 bits (216),  Expect = 3e-11, Method: Compositional matrix adjust.
 Identities = 40/86 (47%), Positives = 65/86 (76%), Gaps = 0/86 (0%)

Query  1   MNPAEIIHFTTQALTLVLFLSLPPILVAALVGTLVSLIQALTQVQEQTLGFVVKLIAVII  60
           MN +E+ +F TQ L +VLF S+P +LVA++VG +VSL+QALTQ+Q+QTL F++KL+A+ I
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLFITTQWLGAELHAFASLALDKIPQ  86
           TL ++  WL++ L  ++   + +I +
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGE  86

43) M634_09100 in NC_021847


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 62.1 bits (216),  Expect = 3e-11, Method: Compositional matrix adjust.
 Identities = 40/86 (47%), Positives = 65/86 (76%), Gaps = 0/86 (0%)

Query  1   MNPAEIIHFTTQALTLVLFLSLPPILVAALVGTLVSLIQALTQVQEQTLGFVVKLIAVII  60
           MN +E+ +F TQ L +VLF S+P +LVA++VG +VSL+QALTQ+Q+QTL F++KL+A+ I
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLFITTQWLGAELHAFASLALDKIPQ  86
           TL ++  WL++ L  ++   + +I +
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGE  86

44) VP1673 in NC_004603


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 62.1 bits (216),  Expect = 3e-11, Method: Compositional matrix adjust.
 Identities = 40/86 (47%), Positives = 65/86 (76%), Gaps = 0/86 (0%)

Query  1   MNPAEIIHFTTQALTLVLFLSLPPILVAALVGTLVSLIQALTQVQEQTLGFVVKLIAVII  60
           MN +E+ +F TQ L +VLF S+P +LVA++VG +VSL+QALTQ+Q+QTL F++KL+A+ I
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLFITTQWLGAELHAFASLALDKIPQ  86
           TL ++  WL++ L  ++   + +I +
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGE  86

45) sctS in NC_012962


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 61.6 bits (214),  Expect = 4e-11, Method: Compositional matrix adjust.
 Identities = 39/78 (50%), Positives = 62/78 (80%), Gaps = 0/78 (0%)

Query  1   MSNADILHFTSQSLWLVLILSLPPVLMAAVVGTLVSLIQALTQIQEQTLGFVIKLIAVII  60
           M+++++ +F +Q LW+VL+ S+P VL+A+VVG +VSL+QALTQIQ+QTL F+IKL+A+ I
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLFATATWLGNELYSFAN  78
           TL  +  WL+  L +++ 
Sbjct  61  TLMVSYPWLSGILLNYTR  78

46) escS in NC_005085


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 56.3 bits (194),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 44/77 (58%), Positives = 71/77 (93%), Gaps = 0/77 (0%)

Query  1   MSEAMIAQLATQMMWlvlllslpvvvvasfvgvlvslvQALTQVQDQTVQFLVKLLAVSV  60
           M+++ ++Q+ TQ++W+VL+ S+PVV+VAS VGV+VSLVQALTQ+QDQT+QF++KLLA+++
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLAMTYHWMGDVLLNYA  77
           TL ++Y W++++LLNY+
Sbjct  61  TLMVSYPWLSGILLNYT  77

47) ssaS in NC_012751


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 53.2 bits (182),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 52/86 (61%), Positives = 76/86 (89%), Gaps = 0/86 (0%)

Query  1   MSNAIIIQLTTQVLWIVLIlsmpvvvvaslvglmvslFQALTQIQDQTLQFlikllavcl  60
           M+++ + Q+ TQ+LWIVL+ SMPVV+VAS+VG++VSL QALTQIQDQTLQF+IKLLA+ +
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  cllMSYHWMGSTMLNYTHQVFLQIGN  86
            L++SY W+++ +LNYT+Q+ L+IG+
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGE  86

48) yscS in NC_008791


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 51.6 bits (176),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 43/84 (52%), Positives = 66/84 (79%), Gaps = 0/84 (0%)

Query  1   MSQGDIIHFTSQAlwlvlvlsmppvlvaavvGTLVSLVQALTQIQEQTLGFVIKLIAVVV  60
           M+++++ +F +Q LW+VL  SMP VLVA+VVG +VSLVQALTQIQ+QTL F+IKL+A+ +
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLFATASWLGNELHSFAEMTMMKI  84
           TL  + +WL+  L +++   M++I
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRI  84

49) YE105_P0027 in NC_015475


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 51.6 bits (176),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 43/84 (52%), Positives = 66/84 (79%), Gaps = 0/84 (0%)

Query  1   MSQGDIIHFTSQAlwlvlvlsmppvlvaavvGTLVSLVQALTQIQEQTLGFVIKLIAVVV  60
           M+++++ +F +Q LW+VL  SMP VLVA+VVG +VSLVQALTQIQ+QTL F+IKL+A+ +
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLFATASWLGNELHSFAEMTMMKI  84
           TL  + +WL+  L +++   M++I
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRI  84

50) Y11_p0731 in NC_017565


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 51.6 bits (176),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 43/84 (52%), Positives = 66/84 (79%), Gaps = 0/84 (0%)

Query  1   MSQGDIIHFTSQAlwlvlvlsmppvlvaavvGTLVSLVQALTQIQEQTLGFVIKLIAVVV  60
           M+++++ +F +Q LW+VL  SMP VLVA+VVG +VSLVQALTQIQ+QTL F+IKL+A+ +
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLFATASWLGNELHSFAEMTMMKI  84
           TL  + +WL+  L +++   M++I
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRI  84

51) yscS in NC_010157


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 51.6 bits (176),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 43/84 (52%), Positives = 66/84 (79%), Gaps = 0/84 (0%)

Query  1   MSQGDIIHFTSQAlwlvlvlsmppvlvaavvGTLVSLVQALTQIQEQTLGFVIKLIAVVV  60
           M+++++ +F +Q LW+VL  SMP VLVA+VVG +VSLVQALTQIQ+QTL F+IKL+A+ +
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLFATASWLGNELHSFAEMTMMKI  84
           TL  + +WL+  L +++   M++I
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRI  84

52) YPA_CD0017 in NC_008122


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 51.6 bits (176),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 43/84 (52%), Positives = 66/84 (79%), Gaps = 0/84 (0%)

Query  1   MSQGDIIHFTSQAlwlvlvlsmppvlvaavvGTLVSLVQALTQIQEQTLGFVIKLIAVVV  60
           M+++++ +F +Q LW+VL  SMP VLVA+VVG +VSLVQALTQIQ+QTL F+IKL+A+ +
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLFATASWLGNELHSFAEMTMMKI  84
           TL  + +WL+  L +++   M++I
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRI  84

53) yscS in NC_005813


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 51.6 bits (176),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 43/84 (52%), Positives = 66/84 (79%), Gaps = 0/84 (0%)

Query  1   MSQGDIIHFTSQAlwlvlvlsmppvlvaavvGTLVSLVQALTQIQEQTLGFVIKLIAVVV  60
           M+++++ +F +Q LW+VL  SMP VLVA+VVG +VSLVQALTQIQ+QTL F+IKL+A+ +
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLFATASWLGNELHSFAEMTMMKI  84
           TL  + +WL+  L +++   M++I
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRI  84

54) yscS in NC_003131


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 51.6 bits (176),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 43/84 (52%), Positives = 66/84 (79%), Gaps = 0/84 (0%)

Query  1   MSQGDIIHFTSQAlwlvlvlsmppvlvaavvGTLVSLVQALTQIQEQTLGFVIKLIAVVV  60
           M+++++ +F +Q LW+VL  SMP VLVA+VVG +VSLVQALTQIQ+QTL F+IKL+A+ +
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLFATASWLGNELHSFAEMTMMKI  84
           TL  + +WL+  L +++   M++I
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRI  84

55) YPDSF_3972 in NC_009377


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 51.6 bits (176),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 43/84 (52%), Positives = 66/84 (79%), Gaps = 0/84 (0%)

Query  1   MSQGDIIHFTSQAlwlvlvlsmppvlvaavvGTLVSLVQALTQIQEQTLGFVIKLIAVVV  60
           M+++++ +F +Q LW+VL  SMP VLVA+VVG +VSLVQALTQIQ+QTL F+IKL+A+ +
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLFATASWLGNELHSFAEMTMMKI  84
           TL  + +WL+  L +++   M++I
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRI  84

56) pYV0072 in NC_006153


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 51.6 bits (176),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 43/84 (52%), Positives = 66/84 (79%), Gaps = 0/84 (0%)

Query  1   MSQGDIIHFTSQAlwlvlvlsmppvlvaavvGTLVSLVQALTQIQEQTLGFVIKLIAVVV  60
           M+++++ +F +Q LW+VL  SMP VLVA+VVG +VSLVQALTQIQ+QTL F+IKL+A+ +
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLFATASWLGNELHSFAEMTMMKI  84
           TL  + +WL+  L +++   M++I
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRI  84

57) YPTS_4290 in NC_010635


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 51.6 bits (176),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 43/84 (52%), Positives = 66/84 (79%), Gaps = 0/84 (0%)

Query  1   MSQGDIIHFTSQAlwlvlvlsmppvlvaavvGTLVSLVQALTQIQEQTLGFVIKLIAVVV  60
           M+++++ +F +Q LW+VL  SMP VLVA+VVG +VSLVQALTQIQ+QTL F+IKL+A+ +
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLFATASWLGNELHSFAEMTMMKI  84
           TL  + +WL+  L +++   M++I
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRI  84

58) HCH_03262 in NC_007645


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 50.8 bits (173),  Expect = 6e-08, Method: Compositional matrix adjust.
 Identities = 37/77 (49%), Positives = 58/77 (76%), Gaps = 0/77 (0%)

Query  1   MTEADVIQYTTEALLLVLILSMPPILVATFTGVLVSLLQAVTQIQEQTLGFAVKLVAIVA  60
           M ++++ Q+ T+ L +VL+ SMP +LVA+  GV+VSL+QA+TQIQ+QTL F +KL+AI  
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLYLTARWLGMEMYQYT  77
           TL ++  WL+  + +YT
Sbjct  61  TLMVSYPWLSGILLNYT  77

59) yscS in NC_007645


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 49.8 bits (169),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 42/85 (50%), Positives = 68/85 (80%), Gaps = 0/85 (0%)

Query  1   MSEAEVIHYAsqllmlvlvlsmPTVIVAAVVGTLVSLVQSLTQIQDQTLSFAIKLIAVSI  60
           M+++E+ ++ +QLL +VL  SMP V+VA+VVG +VSLVQ+LTQIQDQTL F IKL+A++I
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TIMLTARWLGIEIYHFSMNILDHIE  85
           T+M++  WL+  + +++ +I+ +I 
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIG  85

60) yscS in NC_008011


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 49.0 bits (166),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 40/84 (48%), Positives = 61/84 (73%), Gaps = 1/84 (1%)

Query  1   METTTMT-YTAKALYLVLVLSMPPILVASLVGLFVSLIQAITQLQEQTLAFGIKLLAVVL  59
           M+ + +T + ++ L +VL  SMP +LVAS+VG++VSL+QA+TQ+Q+QTL F IKLLA+ +
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  60  TLFFMGGWLTGELYRYAEEIFNRF  83
           TL     WL+G L  Y+ +I  R+
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRI  84

61) bscS in NC_019382


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 49.0 bits (166),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 36/77 (47%), Positives = 57/77 (75%), Gaps = 0/77 (0%)

Query  4   MQTQDLVSFMTQALYLVLWLSLPPIAVAAIVGTLFSLLQALTQVQEQTLSFAVKLIAVFA  63
           M+  +L  F+TQ L +VL  S+P + VA++VG + SL+QALTQ+Q+QTL F +KL+A+  
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  64  TLMLAARWISAEIYNFT  80
           TLM++  W+S+ + N+T
Sbjct  61  TLMVSYPWLSGILLNYT  77

62) bscS in NC_018829


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 49.0 bits (166),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 36/77 (47%), Positives = 57/77 (75%), Gaps = 0/77 (0%)

Query  4   MQTQDLVSFMTQALYLVLWLSLPPIAVAAIVGTLFSLLQALTQVQEQTLSFAVKLIAVFA  63
           M+  +L  F+TQ L +VL  S+P + VA++VG + SL+QALTQ+Q+QTL F +KL+A+  
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  64  TLMLAARWISAEIYNFT  80
           TLM++  W+S+ + N+T
Sbjct  61  TLMVSYPWLSGILLNYT  77

63) bscS in NC_002927


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 49.0 bits (166),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 36/77 (47%), Positives = 57/77 (75%), Gaps = 0/77 (0%)

Query  4   MQTQDLVSFMTQALYLVLWLSLPPIAVAAIVGTLFSLLQALTQVQEQTLSFAVKLIAVFA  63
           M+  +L  F+TQ L +VL  S+P + VA++VG + SL+QALTQ+Q+QTL F +KL+A+  
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  64  TLMLAARWISAEIYNFT  80
           TLM++  W+S+ + N+T
Sbjct  61  TLMVSYPWLSGILLNYT  77

64) bscS in NC_002928


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 49.0 bits (166),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 36/77 (47%), Positives = 57/77 (75%), Gaps = 0/77 (0%)

Query  4   MQTQDLVSFMTQALYLVLWLSLPPIAVAAIVGTLFSLLQALTQVQEQTLSFAVKLIAVFA  63
           M+  +L  F+TQ L +VL  S+P + VA++VG + SL+QALTQ+Q+QTL F +KL+A+  
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  64  TLMLAARWISAEIYNFT  80
           TLM++  W+S+ + N+T
Sbjct  61  TLMVSYPWLSGILLNYT  77

65) bscS in NC_018828


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 49.0 bits (166),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 36/77 (47%), Positives = 57/77 (75%), Gaps = 0/77 (0%)

Query  4   MQTQDLVSFMTQALYLVLWLSLPPIAVAAIVGTLFSLLQALTQVQEQTLSFAVKLIAVFA  63
           M+  +L  F+TQ L +VL  S+P + VA++VG + SL+QALTQ+Q+QTL F +KL+A+  
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  64  TLMLAARWISAEIYNFT  80
           TLM++  W+S+ + N+T
Sbjct  61  TLMVSYPWLSGILLNYT  77

66) escS in NC_013364


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 49.0 bits (166),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 34/80 (43%), Positives = 62/80 (78%), Gaps = 0/80 (0%)

Query  1   MDTGYFVQLCVQTFWIIFILSLPTviaasvigiiisLVQAITQLQDQTLPFLLKIIAVFA  60
           M+ + + Q+  Q +WI+++ S+P V+ ASV+G+I+SLVQA+TQ+QDQTL F++K++A+  
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLALTYHWMGTTIINFSSII  80
           TL ++Y W++  ++N++  I
Sbjct  61  TLMVSYPWLSGILLNYTRQI  80

67) escS in NC_011601


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 49.0 bits (166),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 34/80 (43%), Positives = 62/80 (78%), Gaps = 0/80 (0%)

Query  1   MDTGYFVQLCVQTFWIIFILSLPTviaasvigiiisLVQAITQLQDQTLPFLLKIIAVFA  60
           M+ + + Q+  Q +WI+++ S+P V+ ASV+G+I+SLVQA+TQ+QDQTL F++K++A+  
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLALTYHWMGTTIINFSSII  80
           TL ++Y W++  ++N++  I
Sbjct  61  TLMVSYPWLSGILLNYTRQI  80

68) escS in NC_002655


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 49.0 bits (166),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 34/80 (43%), Positives = 62/80 (78%), Gaps = 0/80 (0%)

Query  1   MDTGYFVQLCVQTFWIIFILSLPTviaasvigiiisLVQAITQLQDQTLPFLLKIIAVFA  60
           M+ + + Q+  Q +WI+++ S+P V+ ASV+G+I+SLVQA+TQ+QDQTL F++K++A+  
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLALTYHWMGTTIINFSSII  80
           TL ++Y W++  ++N++  I
Sbjct  61  TLMVSYPWLSGILLNYTRQI  80

69) ECs4582 in NC_002695


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 49.0 bits (166),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 34/80 (43%), Positives = 62/80 (78%), Gaps = 0/80 (0%)

Query  1   MDTGYFVQLCVQTFWIIFILSLPTviaasvigiiisLVQAITQLQDQTLPFLLKIIAVFA  60
           M+ + + Q+  Q +WI+++ S+P V+ ASV+G+I+SLVQA+TQ+QDQTL F++K++A+  
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLALTYHWMGTTIINFSSII  80
           TL ++Y W++  ++N++  I
Sbjct  61  TLMVSYPWLSGILLNYTRQI  80

70) escS in NC_013008


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 49.0 bits (166),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 34/80 (43%), Positives = 62/80 (78%), Gaps = 0/80 (0%)

Query  1   MDTGYFVQLCVQTFWIIFILSLPTviaasvigiiisLVQAITQLQDQTLPFLLKIIAVFA  60
           M+ + + Q+  Q +WI+++ S+P V+ ASV+G+I+SLVQA+TQ+QDQTL F++K++A+  
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLALTYHWMGTTIINFSSII  80
           TL ++Y W++  ++N++  I
Sbjct  61  TLMVSYPWLSGILLNYTRQI  80

71) ECO55CA74_21285 in NC_017656


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 49.0 bits (166),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 34/80 (43%), Positives = 62/80 (78%), Gaps = 0/80 (0%)

Query  1   MDTGYFVQLCVQTFWIIFILSLPTviaasvigiiisLVQAITQLQDQTLPFLLKIIAVFA  60
           M+ + + Q+  Q +WI+++ S+P V+ ASV+G+I+SLVQA+TQ+QDQTL F++K++A+  
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLALTYHWMGTTIINFSSII  80
           TL ++Y W++  ++N++  I
Sbjct  61  TLMVSYPWLSGILLNYTRQI  80

72) CDCO157_4317 in NC_017906


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 49.0 bits (166),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 34/80 (43%), Positives = 62/80 (78%), Gaps = 0/80 (0%)

Query  1   MDTGYFVQLCVQTFWIIFILSLPTviaasvigiiisLVQAITQLQDQTLPFLLKIIAVFA  60
           M+ + + Q+  Q +WI+++ S+P V+ ASV+G+I+SLVQA+TQ+QDQTL F++K++A+  
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLALTYHWMGTTIINFSSII  80
           TL ++Y W++  ++N++  I
Sbjct  61  TLMVSYPWLSGILLNYTRQI  80

73) bscS in NC_018518


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 48.7 bits (165),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 35/77 (46%), Positives = 56/77 (73%), Gaps = 0/77 (0%)

Query  1   MQTQDLVSFMTQALYLVLWLSLPPIAVVAIVGTLFSLLQALTQVQEQTLSFAVKLIAVFA  60
           M+  +L  F+TQ L +VL  S+P + V ++VG + SL+QALTQ+Q+QTL F +KL+A+  
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLMLAARWISAEIYNFT  77
           TLM++  W+S+ + N+T
Sbjct  61  TLMVSYPWLSGILLNYT  77

74) bscS in NC_017223


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 48.7 bits (165),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 35/77 (46%), Positives = 56/77 (73%), Gaps = 0/77 (0%)

Query  1   MQTQDLVSFMTQALYLVLWLSLPPIAVVAIVGTLFSLLQALTQVQEQTLSFAVKLIAVFA  60
           M+  +L  F+TQ L +VL  S+P + V ++VG + SL+QALTQ+Q+QTL F +KL+A+  
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLMLAARWISAEIYNFT  77
           TLM++  W+S+ + N+T
Sbjct  61  TLMVSYPWLSGILLNYT  77

75) bscS in NC_002929


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 48.7 bits (165),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 35/77 (46%), Positives = 56/77 (73%), Gaps = 0/77 (0%)

Query  1   MQTQDLVSFMTQALYLVLWLSLPPIAVVAIVGTLFSLLQALTQVQEQTLSFAVKLIAVFA  60
           M+  +L  F+TQ L +VL  S+P + V ++VG + SL+QALTQ+Q+QTL F +KL+A+  
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLMLAARWISAEIYNFT  77
           TLM++  W+S+ + N+T
Sbjct  61  TLMVSYPWLSGILLNYT  77

76) escS in NC_013941


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 48.7 bits (165),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 34/80 (43%), Positives = 62/80 (78%), Gaps = 0/80 (0%)

Query  2   MDTGYFVQLCVQTFWIIFILSLPTviaasvigiiisLVQAITQLQDQTLPFLLKIIAVFA  61
           M+ + + Q+  Q +WI+++ S+P V+ ASV+G+I+SLVQA+TQ+QDQTL F++K++A+  
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  62  TLALTYHWMGTTIINFSSII  81
           TL ++Y W++  ++N++  I
Sbjct  61  TLMVSYPWLSGILLNYTRQI  80

77) NH44784_014531 in NC_021285


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 48.4 bits (164),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 37/80 (47%), Positives = 56/80 (70%), Gaps = 0/80 (0%)

Query  1   MGTVDLVSYMTQALYLVLWLSLPPIAVAAIVGTLFSLFQALTQIQEQTLSFAVKLIAVFA  60
           M   +L  ++TQ L +VL  S+P + VA++VG + SL QALTQIQ+QTL F +KL+A+  
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TIMLTARWLSAELYNFTISV  80
           T+M++  WLS+ L N+T  +
Sbjct  61  TLMVSYPWLSGILLNYTRQI  80

78) sctS in NC_020127


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 48.2 bits (163),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 56/76 (74%), Gaps = 0/76 (0%)

Query  3   YTAKALYLVLVLSMPPILVASLVGLFVSLIQAITQLQEQTLAFGIKLLAVVLTLFFMGGW  62
           + ++ L +VL  SMP +LVAS+VG++VSL+QA+TQ+Q+QTL F IKLLA+ +TL     W
Sbjct  9   FVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITLMVSYPW  68

Query  63  LTGELYRYAEEIFNRF  78
           L+G L  Y+ +I  R+
Sbjct  69  LSGILLNYTRQIMLRI  84

79) Dvul_3009 in NC_008741


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 47.7 bits (161),  Expect = 6e-07, Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 57/75 (76%), Gaps = 0/75 (0%)

Query  8   YAVKALYLVLMLSMPPIIVASVVGIVLSLIQAITQLQEQTLTFGVKLIAVVLTLFLMGGW  67
           +  + L +VL  SMP ++VASVVG+++SL+QA+TQ+Q+QTL F +KL+A+ +TL +   W
Sbjct  9   FVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITLMVSYPW  68

Query  68  FGGELLRFADEIFVK  82
           ++G LL ++ +I ++
Sbjct  69  LSGILLNYTRQIMLR  83

80) invX in NC_005863


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 47.7 bits (161),  Expect = 6e-07, Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 57/75 (76%), Gaps = 0/75 (0%)

Query  8   YAVKALYLVLMLSMPPIIVASVVGIVLSLIQAITQLQEQTLTFGVKLIAVVLTLFLMGGW  67
           +  + L +VL  SMP ++VASVVG+++SL+QA+TQ+Q+QTL F +KL+A+ +TL +   W
Sbjct  9   FVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITLMVSYPW  68

Query  68  FGGELLRFADEIFVK  82
           ++G LL ++ +I ++
Sbjct  69  LSGILLNYTRQIMLR  83

81) Deval_3199 in NC_017311


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 47.7 bits (161),  Expect = 6e-07, Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 57/75 (76%), Gaps = 0/75 (0%)

Query  8   YAVKALYLVLMLSMPPIIVASVVGIVLSLIQAITQLQEQTLTFGVKLIAVVLTLFLMGGW  67
           +  + L +VL  SMP ++VASVVG+++SL+QA+TQ+Q+QTL F +KL+A+ +TL +   W
Sbjct  9   FVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITLMVSYPW  68

Query  68  FGGELLRFADEIFVK  82
           ++G LL ++ +I ++
Sbjct  69  LSGILLNYTRQIMLR  83

82) BURPS1106A_A1909 in NC_009078


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 47.4 bits (160),  Expect = 7e-07, Method: Compositional matrix adjust.
 Identities = 35/81 (44%), Positives = 60/81 (75%), Gaps = 0/81 (0%)

Query  1   MEIDSLIRFCTQAMLLCLSVSLPPVIVAALVGLGVSFVQAITSLQDQTLPQVLKLIAVTI  60
           M+   L +F TQ + + L  S+P V+VA++VG+ VS+VQA+T +QDQTL  ++KL+A++I
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TIMVAAPTGCAAILHFANQMM  81
           T+MV+ P   + +L+++ Q+M
Sbjct  61  TLMVSYPWLSGILLNYTRQIM  81

83) sctS in NC_007435


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 47.4 bits (160),  Expect = 7e-07, Method: Compositional matrix adjust.
 Identities = 35/81 (44%), Positives = 60/81 (75%), Gaps = 0/81 (0%)

Query  1   MEIDSLIRFCTQAMLLCLSVSLPPVIVAALVGLGVSFVQAITSLQDQTLPQVLKLIAVTI  60
           M+   L +F TQ + + L  S+P V+VA++VG+ VS+VQA+T +QDQTL  ++KL+A++I
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TIMVAAPTGCAAILHFANQMM  81
           T+MV+ P   + +L+++ Q+M
Sbjct  61  TLMVSYPWLSGILLNYTRQIM  81

84) BURPS668_A2001 in NC_009075


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 47.4 bits (160),  Expect = 7e-07, Method: Compositional matrix adjust.
 Identities = 35/81 (44%), Positives = 60/81 (75%), Gaps = 0/81 (0%)

Query  1   MEIDSLIRFCTQAMLLCLSVSLPPVIVAALVGLGVSFVQAITSLQDQTLPQVLKLIAVTI  60
           M+   L +F TQ + + L  S+P V+VA++VG+ VS+VQA+T +QDQTL  ++KL+A++I
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TIMVAAPTGCAAILHFANQMM  81
           T+MV+ P   + +L+++ Q+M
Sbjct  61  TLMVSYPWLSGILLNYTRQIM  81

85) BPC006_II1890 in NC_018529


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 47.4 bits (160),  Expect = 7e-07, Method: Compositional matrix adjust.
 Identities = 35/81 (44%), Positives = 60/81 (75%), Gaps = 0/81 (0%)

Query  1   MEIDSLIRFCTQAMLLCLSVSLPPVIVAALVGLGVSFVQAITSLQDQTLPQVLKLIAVTI  60
           M+   L +F TQ + + L  S+P V+VA++VG+ VS+VQA+T +QDQTL  ++KL+A++I
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TIMVAAPTGCAAILHFANQMM  81
           T+MV+ P   + +L+++ Q+M
Sbjct  61  TLMVSYPWLSGILLNYTRQIM  81

86) BDL_4712 in NC_021877


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 47.4 bits (160),  Expect = 7e-07, Method: Compositional matrix adjust.
 Identities = 35/81 (44%), Positives = 60/81 (75%), Gaps = 0/81 (0%)

Query  1   MEIDSLIRFCTQAMLLCLSVSLPPVIVAALVGLGVSFVQAITSLQDQTLPQVLKLIAVTI  60
           M+   L +F TQ + + L  S+P V+VA++VG+ VS+VQA+T +QDQTL  ++KL+A++I
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TIMVAAPTGCAAILHFANQMM  81
           T+MV+ P   + +L+++ Q+M
Sbjct  61  TLMVSYPWLSGILLNYTRQIM  81

87) DvMF_2414 in NC_011769


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 47.4 bits (160),  Expect = 7e-07, Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 57/75 (76%), Gaps = 0/75 (0%)

Query  8   YAVKALYLVLMLSMPPIVVASVIGILISLVQAITQLQEQTLTFGVKLIAVVLTLFLMGGW  67
           +  + L +VL  SMP ++VASV+G+++SLVQA+TQ+Q+QTL F +KL+A+ +TL +   W
Sbjct  9   FVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITLMVSYPW  68

Query  68  FGAELLRFADEIFVR  82
           +++ LL ++ +I +R
Sbjct  69  LSGILLNYTRQIMLR  83

88) sctS in NC_017832


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 47.1 bits (159),  Expect = 8e-07, Method: Compositional matrix adjust.
 Identities = 35/81 (44%), Positives = 60/81 (75%), Gaps = 0/81 (0%)

Query  1   MEIDSLIRFCTQAMLLCLTVSLPPVIVAALVGLGVSFVQAITSLQDQTLPQVLKLIAVTI  60
           M+   L +F TQ + + L  S+P V+VA++VG+ VS+VQA+T +QDQTL  ++KL+A++I
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TIMVAAPTGCAAILHFANQMM  81
           T+MV+ P   + +L+++ Q+M
Sbjct  61  TLMVSYPWLSGILLNYTRQIM  81

89) sctS in NC_006351


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 47.1 bits (159),  Expect = 8e-07, Method: Compositional matrix adjust.
 Identities = 35/81 (44%), Positives = 60/81 (75%), Gaps = 0/81 (0%)

Query  1   MEIDSLIRFCTQAMLLCLTVSLPPVIVAALVGLGVSFVQAITSLQDQTLPQVLKLIAVTI  60
           M+   L +F TQ + + L  S+P V+VA++VG+ VS+VQA+T +QDQTL  ++KL+A++I
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TIMVAAPTGCAAILHFANQMM  81
           T+MV+ P   + +L+++ Q+M
Sbjct  61  TLMVSYPWLSGILLNYTRQIM  81

90) BTI_1910 in NC_021173


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 46.6 bits (157),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 48/86 (56%), Positives = 75/86 (88%), Gaps = 0/86 (0%)

Query  1   MSEAVITQLAAQMMWlvlllslpvvvvasvvgilvslvQALTQVQDQTIQFLIKllavav  60
           M+++ +TQ+ +Q++W+VL+ S+PVV+VASVVG++VSLVQALTQ+QDQT+QF+IKLLA+A+
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  tlaatYHWMGDVLINYATQSFNQIGG  86
           TL  +Y W++++L+NY+ Q   +IG 
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGE  86

91) escS in NC_013353


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 46.3 bits (156),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 62/80 (78%), Gaps = 0/80 (0%)

Query  1   METGYFVQLCVQTLWIIFILSLPTviaasvvgiiislvQAITQLQDQTLPFLLKIIAVFA  60
           M+ + + Q+  Q LWI+++ S+P V+ ASVVG+I+SLVQA+TQ+QDQTL F++K++A+  
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLALTYHWMGTTIINFSSII  80
           TL ++Y W++  ++N++  I
Sbjct  61  TLMVSYPWLSGILLNYTRQI  80

92) escS in NC_013361


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 46.3 bits (156),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 62/80 (78%), Gaps = 0/80 (0%)

Query  1   METGYFVQLCVQTLWIIFILSLPTviaasvvgiiislvQAITQLQDQTLPFLLKIIAVFA  60
           M+ + + Q+  Q LWI+++ S+P V+ ASVVG+I+SLVQA+TQ+QDQTL F++K++A+  
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLALTYHWMGTTIINFSSII  80
           TL ++Y W++  ++N++  I
Sbjct  61  TLMVSYPWLSGILLNYTRQI  80

93) PSE_4077 in NC_016642


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 45.3 bits (152),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 33/80 (42%), Positives = 63/80 (79%), Gaps = 0/80 (0%)

Query  1   MTGAEVLDIASEGIWTLILVSAPVMligllvgvivALFQALTQIQEQTLVFVPKILSIFI  60
           M ++E+ ++ ++ +W +++ S PV+L++ +VGVIV+L QALTQIQ+QTL F+ K+L+I I
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  ALLVTLPFMGELMNSFTNRI  80
           +L+V+ P ++ ++ ++T +I
Sbjct  61  TLMVSYPWLSGILLNYTRQI  80

94) Bphy_2942 in NC_010622


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 44.0 bits (147),  Expect = 7e-06, Method: Compositional matrix adjust.
 Identities = 33/80 (42%), Positives = 56/80 (70%), Gaps = 0/80 (0%)

Query  1   MTPETVTTLAHEAMYIALLLAAPPLFVGLVVGLIVSLFQAATQINEATLSFIPKLFAIAV  60
           M    +T +  + + I L+ + P ++V+ VVG+IVSL QA TQI++ TL F+ KL+AIA+
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLVLIGPWMLAKMLDYMRHM  80
           TL++  PW+ + +L+Y R++
Sbjct  61  TLMVSYPWLSGILLNYTRQI  80

95) fliQ in NC_012796


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 43.7 bits (146),  Expect = 8e-06, Method: Compositional matrix adjust.
 Identities = 30/70 (43%), Positives = 56/70 (80%), Gaps = 0/70 (0%)

Query  16  LALFLALPMlgvslvvgvfvsvlQAATQIQEMTLTFVPKILSMFIALLLAFPWMMDKMLN  75
           + LF ++P++ V+ VVGV+VS++QA TQIQ+ TL F+ K+L++ I+L++++PW+ + +LN
Sbjct  16  IVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITLMVSYPWLSGILLN  75

Query  76  FTRELFMNIP  85
           +TR++ + I 
Sbjct  76  YTRQIMLRIG  85

96) fliQ in NC_015975


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 42.7 bits (142),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 34/64 (54%), Positives = 50/64 (79%), Gaps = 0/64 (0%)

Query  17  VLIVSAPVILVAMIVGLIISIFQATTQIQEQTLSFVPKLAAIFVTLIIAGNFMINILLEF  76
           VL+ S PV+LVA +VG+I+S+ QA TQIQ+QTL F+ KL AI +TL+++   +  ILL++
Sbjct  17  VLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITLMVSYPWLSGILLNY  76

Query  77  TRHI  80
           TR+I
Sbjct  77  TRQI  80

97) fliQ in NC_017325


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 42.4 bits (141),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 34/84 (41%), Positives = 57/84 (68%), Gaps = 0/84 (0%)

Query  1   MNEADALDIVQAAIWTVIVASGPAVLAAMVVGVGIAFIQALTQVQEMTLTFVPKILAVMI  60
           MN+++  ++V   +W V+ +S P VL A VVGV ++++QALTQ+Q+ TL F+ K+LA+ I
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TAAVSAPFVGAQISIFTDIVFSRI  84
           T  VS P +++ +  +T  +  RI
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRI  84

98) CPE3_0899 in NC_022441


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 42.1 bits (140),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 35/78 (45%), Positives = 56/78 (72%), Gaps = 0/78 (0%)

Query  9   KSILFEYSYQSLLLILIVSAPPIILASIVGIMVAIFQAATQIQEQTFAFAIKLVVIFGTL  68
            S L ++  Q L ++L+ S P +++AS+VG++V++ QA TQIQ+QT+ F IKL+ I  TL
Sbjct  3   DSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITL  62

Query  69  MISGGWLSTMILRFASQI  86
           M+S  WLS ++L ++ QI
Sbjct  63  MVSYPWLSGILLNYTRQI  80

99) CPE1_0898 in NC_022439


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 42.1 bits (140),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 35/78 (45%), Positives = 56/78 (72%), Gaps = 0/78 (0%)

Query  9   KSILFEYSYQSLLLILIVSAPPIILASIVGIMVAIFQAATQIQEQTFAFAIKLVVIFGTL  68
            S L ++  Q L ++L+ S P +++AS+VG++V++ QA TQIQ+QT+ F IKL+ I  TL
Sbjct  3   DSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITL  62

Query  69  MISGGWLSTMILRFASQI  86
           M+S  WLS ++L ++ QI
Sbjct  63  MVSYPWLSGILLNYTRQI  80

100) CPE2_0899 in NC_022440


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 42.1 bits (140),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 35/78 (45%), Positives = 56/78 (72%), Gaps = 0/78 (0%)

Query  9   KSILFEYSYQSLLLILIVSAPPIILASIVGIMVAIFQAATQIQEQTFAFAIKLVVIFGTL  68
            S L ++  Q L ++L+ S P +++AS+VG++V++ QA TQIQ+QT+ F IKL+ I  TL
Sbjct  3   DSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITL  62

Query  69  MISGGWLSTMILRFASQI  86
           M+S  WLS ++L ++ QI
Sbjct  63  MVSYPWLSGILLNYTRQI  80

101) fliQ in NC_002678


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 41.6 bits (138),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 35/84 (42%), Positives = 58/84 (70%), Gaps = 0/84 (0%)

Query  1   MNEADALDIVQYAVWTVLTASAPVVLVAMAVGIGIALIQALTQIQEITLTFVPKIVAIML  60
           MN+++  ++V   +W VL +S PVVLVA  VG+ ++L+QALTQIQ+ TL F+ K++AI +
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  VVALTGPFIGGQISAFTNVIFQRI  84
            + ++ P ++G +  +T  I  RI
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRI  84

102) CP1047 in NC_002179


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 41.4 bits (137),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 34/78 (44%), Positives = 56/78 (72%), Gaps = 0/78 (0%)

Query  10  KSVLFEYSYQSLLLILIVSAPPIILASIVGIMVAIFQAATQIQEQTFAFAVKLVVIFGTL  69
            S L ++  Q L ++L+ S P +++AS+VG++V++ QA TQIQ+QT+ F +KL+ I  TL
Sbjct  3   DSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITL  62

Query  70  MISGGWLSNMILRFAGQI  87
           M+S  WLS ++L ++ QI
Sbjct  63  MVSYPWLSGILLNYTRQI  80

103) yscS in NC_000922


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 41.4 bits (137),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 34/78 (44%), Positives = 56/78 (72%), Gaps = 0/78 (0%)

Query  10  KSVLFEYSYQSLLLILIVSAPPIILASIVGIMVAIFQAATQIQEQTFAFAVKLVVIFGTL  69
            S L ++  Q L ++L+ S P +++AS+VG++V++ QA TQIQ+QT+ F +KL+ I  TL
Sbjct  3   DSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITL  62

Query  70  MISGGWLSNMILRFAGQI  87
           M+S  WLS ++L ++ QI
Sbjct  63  MVSYPWLSGILLNYTRQI  80

104) yscS in NC_002491


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 41.4 bits (137),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 34/78 (44%), Positives = 56/78 (72%), Gaps = 0/78 (0%)

Query  10  KSVLFEYSYQSLLLILIVSAPPIILASIVGIMVAIFQAATQIQEQTFAFAVKLVVIFGTL  69
            S L ++  Q L ++L+ S P +++AS+VG++V++ QA TQIQ+QT+ F +KL+ I  TL
Sbjct  3   DSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITL  62

Query  70  MISGGWLSNMILRFAGQI  87
           M+S  WLS ++L ++ QI
Sbjct  63  MVSYPWLSGILLNYTRQI  80

105) CPK_ORF00232 in NC_017285


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 41.4 bits (137),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 34/78 (44%), Positives = 56/78 (72%), Gaps = 0/78 (0%)

Query  10  KSVLFEYSYQSLLLILIVSAPPIILASIVGIMVAIFQAATQIQEQTFAFAVKLVVIFGTL  69
            S L ++  Q L ++L+ S P +++AS+VG++V++ QA TQIQ+QT+ F +KL+ I  TL
Sbjct  3   DSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITL  62

Query  70  MISGGWLSNMILRFAGQI  87
           M+S  WLS ++L ++ QI
Sbjct  63  MVSYPWLSGILLNYTRQI  80

106) CpB0853 in NC_005043


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 41.4 bits (137),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 34/78 (44%), Positives = 56/78 (72%), Gaps = 0/78 (0%)

Query  10  KSVLFEYSYQSLLLILIVSAPPIILASIVGIMVAIFQAATQIQEQTFAFAVKLVVIFGTL  69
            S L ++  Q L ++L+ S P +++AS+VG++V++ QA TQIQ+QT+ F +KL+ I  TL
Sbjct  3   DSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITL  62

Query  70  MISGGWLSNMILRFAGQI  87
           M+S  WLS ++L ++ QI
Sbjct  63  MVSYPWLSGILLNYTRQI  80

107) Anamo_0280 in NC_018024


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 41.1 bits (136),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 29/67 (44%), Positives = 53/67 (80%), Gaps = 0/67 (0%)

Query  14  QAIWIILLSSMPVLLVAMVIGLLIGILQTATSIQEQTLVFIPKILAVflllfllGPWMFG  73
           Q +WI+L++SMPV+LVA V+G++++++Q+ T IQ+QTL F+ K+LA+ + L +  PW+ G
Sbjct  12  QLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITLMVSYPWLSG  71

Query  74  HVSEFAR  80
            + +++R
Sbjct  72  ILLNYTR  78

108) Veis_1125 in NC_008786


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 41.1 bits (136),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 28/66 (43%), Positives = 46/66 (70%), Gaps = 0/66 (0%)

Query  14  LSLLLMISMPvlaavlavglIVSIFQAVTQIHEATLAFVPKLIAAMAVLALAGPWMLGLL  73
           L ++L  SMPV+     VG+IVS+ QA+TQI++ TL F+ KL+A    L ++ PW+ G+L
Sbjct  14  LWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITLMVSYPWLSGIL  73

Query  74  VDFIRR  79
           +++ R+
Sbjct  74  LNYTRQ  79

109) H650_09080 in NC_021500


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 41.1 bits (136),  Expect = 6e-05, Method: Compositional matrix adjust.
 Identities = 26/63 (42%), Positives = 44/63 (70%), Gaps = 0/63 (0%)

Query  10  VGLFIATPlllaalaaGLIVSILQASTQINEMTLSFIPKILTIVVVLIACGPWMLSTLVD  69
           + LF + P++L A   G+IVS++QA TQI++ TL F+ K+L+I + L+   PW+ + L++
Sbjct  16  IVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITLMVSYPWLSGILLN  75

Query  70  YMR  72
           Y R
Sbjct  76  YTR  78

110) Mesau_01994 in NC_019973


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 41.1 bits (136),  Expect = 6e-05, Method: Compositional matrix adjust.
 Identities = 34/84 (41%), Positives = 58/84 (70%), Gaps = 0/84 (0%)

Query  1   MNEADALDIVQYAVWTVLTASAPVVLVAMAVGIGIALIQALTQVQEITLTFVPKIVAIML  60
           MN+++  ++V   +W VL +S PVVLVA  VG+ ++L+QALTQ+Q+ TL F+ K++AI +
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  VVALTGPFIGGQISAFTNVIFERI  84
            + ++ P ++G +  +T  I  RI
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRI  84

111) Mesop_1988 in NC_015675


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 41.1 bits (136),  Expect = 6e-05, Method: Compositional matrix adjust.
 Identities = 34/84 (41%), Positives = 58/84 (70%), Gaps = 0/84 (0%)

Query  1   MNEADALDIVQYAVWTVLTASAPVVLVAMAVGIGIALIQALTQVQEITLTFVPKIVAIML  60
           MN+++  ++V   +W VL +S PVVLVA  VG+ ++L+QALTQ+Q+ TL F+ K++AI +
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  VVALTGPFIGGQISAFTNVIFERI  84
            + ++ P ++G +  +T  I  RI
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRI  84

112) Despr_2237 in NC_014972


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 40.3 bits (133),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 29/72 (41%), Positives = 54/72 (75%), Gaps = 0/72 (0%)

Query  17  ILLTSAPMLIAAMVIGLIISIFQAATQINEQTMTFIPKIVAVFITLLIFGPWIMELLITF  76
           +L+TS P+++ A V+G+I+S+ QA TQI++QT+ F+ K++A+ ITL++  PW+  +L+ +
Sbjct  17  VLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITLMVSYPWLSGILLNY  76

Query  77  TTGIINQIATVG  88
           T  I+ +I+  G
Sbjct  77  TRQIMLRIGEHG  88

113) D781_3937 in NC_020064


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 39.3 bits (129),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 35/81 (44%), Positives = 58/81 (72%), Gaps = 4/81 (4%)

Query  7   FRQAMLLVVLLSA-PPLIVAVLVGVITSLLQAAMQLQDQTLPFCLKLVAVGVTLALTGRW  65
           F   +L +VL+++ P ++VA +VGVI SL+QA  Q+QDQTL F +KL+A+++TL ++  W
Sbjct  9   FVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITLMVSYPW  68

Query  66  LGVELLQLTQNAFAMMSRVGG  86
           L+  LL+ T++   +M R+G 
Sbjct  69  LSGILLNYTRQ---IMLRIGE  86

114) hrcS in NC_004578


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 39.0 bits (128),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 32/75 (43%), Positives = 52/75 (70%), Gaps = 1/75 (1%)

Query  2   EALALFKQGMFLVVILTA-PPLGVAVLVGVITSLLQALMQIQDQTLPFGIKLAAVGMTLA  60
             L+ F   ++ +V++T+ P + VA +VGVI SL+QAL QIQDQTL F IKL A+++TL 
Sbjct  4   SELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITLM  63

Query  61  MTGRWIGVELIQFIN  75
           ++  W++  L+++  
Sbjct  64  VSYPWLSGILLNYTR  78

115) STAUR_3047 in NC_014623


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 39.0 bits (128),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 33/82 (41%), Positives = 54/82 (66%), Gaps = 0/82 (0%)

Query  3   QLSVITQQALFLVLIVSAPPVLISLVVGFIIALFQATTQIQEQTLTFAPKVVIVFIVLAM  62
           +L+ +  Q L +VL+ S P VL++ VVG I++L QA TQIQ+QTL F  K++ + I L +
Sbjct  5   ELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITLMV  64

Query  63  AGPWIGHQLLRFTFHVFDRFPA  84
           + PW++  LL +T ++  R+  
Sbjct  65  SYPWLSGILLNYTRQIMLRIGE  86

116) HBZC1_02740 in NC_015674


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 38.7 bits (127),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 31/76 (41%), Positives = 55/76 (73%), Gaps = 0/76 (0%)

Query  2   EAQLMKLAIETYKITLMISLPvllvglvvgllvSIFQATTQINEMTLSFVPKILAVIAVI  61
           +++L ++  +   I L  S+PV+LV+ VVG++VS+ QA TQI++ TL F+ K+LA+   +
Sbjct  3   DSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITL  62

Query  62  ILTMPWMLNMLLDYTR  77
           +++ PW+  +LL+YTR
Sbjct  63  MVSYPWLSGILLNYTR  78

117) fliQ in NC_008229


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 38.5 bits (126),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 31/74 (42%), Positives = 55/74 (75%), Gaps = 0/74 (0%)

Query  2   ESQLMKLAIETYKITLIISLPvllvglvvgllvSIFQATTQINEMTLSFVPKILAVIGVL  61
           +S+L ++  +   I L+ S+PV+LV+ VVG++VS+ QA TQI++ TL F+ K+LA+   L
Sbjct  3   DSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITL  62

Query  62  ILTMPWMTNMLLDY  75
           +++ PW++ +LL+Y
Sbjct  63  MVSYPWLSGILLNY  76

118) fliQ in NC_017361


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 38.2 bits (125),  Expect = 4e-04, Method: Compositional matrix adjust.
 Identities = 31/74 (42%), Positives = 54/74 (73%), Gaps = 0/74 (0%)

Query  2   ESQLMKLAIETYKITLMISLPvllvglvvgllvSIFQATTQINEMTLSFVPKILAVIGVL  61
           +S+L ++  +   I L  S+PV+LV+ VVG++VS+ QA TQI++ TL F+ K+LA+   L
Sbjct  3   DSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITL  62

Query  62  ILTMPWMTNMLLDY  75
           +++ PW++ +LL+Y
Sbjct  63  MVSYPWLSGILLNY  76

119) S58_72180 in NC_020453


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 37.9 bits (124),  Expect = 5e-04, Method: Compositional matrix adjust.
 Identities = 35/81 (44%), Positives = 57/81 (71%), Gaps = 0/81 (0%)

Query  5   MGQATIVDHLVRGLTVVLIFAMPPLGVAMVVGLLVSILQAATQIQDQVLPQTIKLIAVVA  64
           M ++ + + + + L +VL+ +MP + VA VVG++VS++QA TQIQDQ L   IKL+A+  
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  65  TLAVFGAVLAAPLIQYTDQIL  85
           TL V  + L++ L++YT QI+
Sbjct  61  TLMVSYPWLSGILLNYTRQIM  81

120) LILAB_19930 in NC_015711


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 37.2 bits (121),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 33/79 (42%), Positives = 54/79 (69%), Gaps = 1/79 (1%)

Query  6   FITQEALFLVLVASAPPVLMSLLVGFIISLFQATTQIQEQTLTFAPKVVAVFGILALAGP  65
           F+TQ  L +VL +S P VL++ +VG I+SL QA TQIQ+QTL F  K++A+   L ++ P
Sbjct  9   FVTQ-LLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITLMVSYP  67

Query  66  WIGSQLVRFTFHVFDRFPA  84
           W+++ L+ +T ++  R+  
Sbjct  68  WLSGILLNYTRQIMLRIGE  86

121) escS in NC_013716


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 36.9 bits (120),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 34/80 (43%), Positives = 61/80 (77%), Gaps = 0/80 (0%)

Query  1   MGTGYFVQLCVQTLWIIFILSLPtviaasvigiiisliqaitqlqDQTLPFLLKIIAVFA  60
           M  + + Q+  Q LWI+++ S+P V+ ASV+G+I+SL+QA+TQ+QDQTL F++K++A+  
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLALTYHWMGTTIINFSSII  80
           TL ++Y W++  ++N++  I
Sbjct  61  TLMVSYPWLSGILLNYTRQI  80

122) bglu_2g02330 in NC_012721


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 36.9 bits (120),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 34/81 (42%), Positives = 60/81 (75%), Gaps = 0/81 (0%)

Query  1   MDVDSLIRFTTEGMLLCLTVSLPPVIVAAVVGLGVSFVQAITSLQDQTLPQVIKLVAVTI  60
           M+   L +F T+ + + L  S+P V+VA+VVG+ VS+VQA+T +QDQTL  +IKL+A++I
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TiviaapvccaavLHFANQLM  81
           T++++ P   + +L+++ Q+M
Sbjct  61  TLMVSYPWLSGILLNYTRQIM  81

123) GYMC10_4174 in NC_013406


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 36.9 bits (120),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 29/71 (41%), Positives = 52/71 (74%), Gaps = 0/71 (0%)

Query  11  GQAVYIVLQVSAPMLVLALVVGLIISIFQATTQIQEQTLAFVPKIIIVLVALLLFGPWIL  70
            Q + IVL  S P++++A VVG+I+S+ QA TQIQ+QTL F+ K++ + ++L++  PW+ 
Sbjct  11  TQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITLMVSYPWLS  70

Query  71  TTLVDFTHGIL  81
             L+++T+ I+
Sbjct  71  GILLNYTRQIM  81

124) fliQ in NC_017030


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 36.1 bits (117),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 33/79 (42%), Positives = 52/79 (66%), Gaps = 1/79 (1%)

Query  6   FITQEALFLVLVVSAPPVLMSLLVGFLISLFQATTQIQEQTLTFAPKVVLVFGVLAMTGP  65
           F+TQ  L +VL  S P VL++ +VG ++SL QA TQIQ+QTL F  K++ +   L ++ P
Sbjct  9   FVTQ-LLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITLMVSYP  67

Query  66  WIGGQLLRFTFHVFDRFPA  84
           W++G LL +T ++  R+  
Sbjct  68  WLSGILLNYTRQIMLRIGE  86

125) fliQ in NC_008254


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 36.1 bits (117),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 35/86 (41%), Positives = 61/86 (71%), Gaps = 0/86 (0%)

Query  1   MNEADALDIVQYAIWTVLLASGPavivamvvgvgialvQALTQVQEITLTFVPKIVAIML  60
           MN+++  ++V   +W VL++S P V+VA VVGV ++LVQALTQ+Q+ TL F+ K++AI +
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  AIALSGPFVGTQISSFTNVIFQRIEN  86
           ++ +S P ++  + ++T  I  RI +
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGE  86

126) MYSTI_02839 in NC_020126


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 35.8 bits (116),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 32/79 (41%), Positives = 52/79 (66%), Gaps = 1/79 (1%)

Query  6   FITQEALFLVLVVSAPPVLMSLLVGFIISLFQATTQIQEQTLTFAPKVIIVFGVLAMTGP  65
           F+TQ  L +VL  S P VL++ +VG I+SL QA TQIQ+QTL F  K++ +   L ++ P
Sbjct  9   FVTQ-LLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITLMVSYP  67

Query  66  WIGSQLMRFTFHVFDRFPA  84
           W+++ L+ +T ++  R+  
Sbjct  68  WLSGILLNYTRQIMLRIGE  86

127) PSEBR_a5381 in NC_015379


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 34.3 bits (110),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 37/76 (49%), Positives = 55/76 (73%), Gaps = 1/76 (1%)

Query  2   DALTLFKEGMLLVVLLSA-PPLIVAVIVGVLTSLVQALMQIQDQTLPFGIKlvavgltll  60
             LT F   +L +VL+++ P ++VA +VGV+ SLVQAL QIQDQTL F IKL+A+++TL+
Sbjct  4   SELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITLM  63

Query  61  vtgRWIGVELLGLLRR  76
           V+  W++  LL   R+
Sbjct  64  VSYPWLSGILLNYTRQ  79

128) hrcS in NC_016830


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 34.3 bits (110),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 37/76 (49%), Positives = 55/76 (73%), Gaps = 1/76 (1%)

Query  2   DALTLFKEGMLLVVLLSA-PPLIVAVIVGVLTSLVQALMQIQDQTLPFGIKlvavgltll  60
             LT F   +L +VL+++ P ++VA +VGV+ SLVQAL QIQDQTL F IKL+A+++TL+
Sbjct  4   SELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITLM  63

Query  61  vtgRWIGVELLGLLRR  76
           V+  W++  LL   R+
Sbjct  64  VSYPWLSGILLNYTRQ  79

129) fliQ in NC_008435


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 34.0 bits (109),  Expect = 0.007, Method: Compositional matrix adjust.
 Identities = 34/84 (41%), Positives = 62/84 (74%), Gaps = 0/84 (0%)

Query  1   MTGMEVLDIARDAVWTIVLVSAPlmvvglvvgvavslvqalTQIQEQTLVFVPKILSIFV  60
           M + E+ ++  + +W +++ S P+++V+ VVGV VSLVQALTQIQ+QTL F+ K+L+I +
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TFVLALPFMADAMHSYMMRISSRI  84
           T++++ P +++ + +Y  +I  RI
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRI  84

130) fliQ in NC_010382


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 34.0 bits (109),  Expect = 0.008, Method: Compositional matrix adjust.
 Identities = 27/65 (42%), Positives = 49/65 (76%), Gaps = 0/65 (0%)

Query  16  IILLTSGPLLLVALITGLAVSIFQATTSIQEQTLAFVPKIVAVLVAIVFFGPWMLSQVTS  75
           I+L+TS P++LVA + G+ VS+ QA T IQ+QTL F+ K++A+ ++++   PW+ + + +
Sbjct  16  IVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITLMVSYPWLSGILLN  75

Query  76  YARDI  80
           Y+R+I
Sbjct  76  YTRQI  80

131) MXAN_2448 in NC_008095


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 33.7 bits (108),  Expect = 0.010, Method: Compositional matrix adjust.
 Identities = 33/79 (42%), Positives = 54/79 (69%), Gaps = 1/79 (1%)

Query  6   FITQEALFLVLVASAPPVLMSLLVGFIISLFQATTQIQEQTLTFAPKvvavfgvlalagP  65
           F+TQ  L +VL +S P VL++ +VG I+SL QA TQIQ+QTL F  K++A+   L ++ P
Sbjct  9   FVTQ-LLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITLMVSYP  67

Query  66  WIGSQLVRFTFHVFDRFPA  84
           W+++ L+ +T ++  R+  
Sbjct  68  WLSGILLNYTRQIMLRIGE  86

132) fliQ in NC_008209


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 32.2 bits (102),  Expect = 0.026, Method: Compositional matrix adjust.
 Identities = 27/66 (41%), Positives = 45/66 (69%), Gaps = 0/66 (0%)

Query  15  LWIAVLISIPVLTAALVTGVSIGLVQALTSIQEMTLTFVPKLAAIVLVFWMSMGFMTQTL  74
           LWI ++ S+PV+  A V GV ++LVQALT IQ+ TL F+ KL AI + + +S   ++  L
Sbjct  14  LWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITLMVSYPWLSGIL  73

Query  75  VSFFHE  80
           +++ ++
Sbjct  74  LNYTRQ  79

133) fliQ in NC_015730


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 32.2 bits (102),  Expect = 0.026, Method: Compositional matrix adjust.
 Identities = 27/66 (41%), Positives = 45/66 (69%), Gaps = 0/66 (0%)

Query  15  LWIAVLISIPVLTAALVTGVSIGLVQALTSIQEMTLTFVPKLAAIVLVFWMSMGFMTQTL  74
           LWI ++ S+PV+  A V GV ++LVQALT IQ+ TL F+ KL AI + + +S   ++  L
Sbjct  14  LWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITLMVSYPWLSGIL  73

Query  75  VSFFHE  80
           +++ ++
Sbjct  74  LNYTRQ  79

134) Rpdx1_1463 in NC_014834


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 31.9 bits (101),  Expect = 0.031, Method: Compositional matrix adjust.
 Identities = 37/87 (43%), Positives = 61/87 (71%), Gaps = 4/87 (4%)

Query  1   MTGPETLDVARDAIWTIVVVSAPlmvvglvvgvavslvqalTQIQEQTLVFVPKILAMFI  60
           M ++E  +   + +W ++  S P+++V+ VVGV VSLVQALTQIQ+QTL F+ K+LA+ I
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLVLALPFMADAL----HAQMLRISSR  83
           TL+++ P +++ L    +  MLRI+ +
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGEH  87

135) fliQ in NC_007778


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 31.9 bits (101),  Expect = 0.031, Method: Compositional matrix adjust.
 Identities = 36/87 (42%), Positives = 63/87 (73%), Gaps = 4/87 (4%)

Query  1   MTGAETLDIAREAVWTIVIVSAPlmvvglvvgvavslvqalTQIQEQTLVFVPKILAMFL  60
           M ++E  ++  + +W +++ S P+++V+ VVGV VSLVQALTQIQ+QTL F+ K+LA+ +
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLVLTLPFMADRL----HAEMLRISSR  83
           TL+++ P +++ L    +  MLRI+ +
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGEH  87

136) Meso_0111 in NC_008254


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 31.4 bits (99),  Expect = 0.042, Method: Compositional matrix adjust.
 Identities = 27/66 (41%), Positives = 48/66 (73%), Gaps = 0/66 (0%)

Query  8   LVFYLSMPLIIAATVVGLMVAIVQTLIQLQEQTVAFAAKLTAVVLILSFSIGGMSSHLLS  67
           +V++ SMP+++ A+VVG++V++VQ+L Q+Q+QT+ F  KL A+ + L  S   +S+ LL+
Sbjct  16  IVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAITLMVSYPWLSGILLN  75

Query  68  LFEQVM  73
              Q+M
Sbjct  76  YTRQIM  81

137) fliQ in NC_007958


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 31.4 bits (99),  Expect = 0.047, Method: Compositional matrix adjust.
 Identities = 35/87 (41%), Positives = 63/87 (73%), Gaps = 4/87 (4%)

Query  1   MTGPETLDVARDAVWTIVIVSTPlmvvglvvgvavslvqalTQIQEQTLVFVPKILAMFL  60
           M ++E  +   + +W +++ S P+++V+ VVGV VSLVQALTQIQ+QTL F+ K+LA+ +
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TFVLTLPFMADVL----HAEMLRISSR  83
           T++++ P ++++L    +  MLRI+ +
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGEH  87

138) fliQ in NC_005296


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 31.1 bits (98),  Expect = 0.057, Method: Compositional matrix adjust.
 Identities = 35/87 (41%), Positives = 61/87 (71%), Gaps = 4/87 (4%)

Query  1   MTGPETLDVARDAIWTIVVVSAPlmvvglvvgvavslvqalTQIQEQTLVFVPKILAMFV  60
           M ++E  +   + +W ++  S P+++V+ VVGV VSLVQALTQIQ+QTL F+ K+LA+ +
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLVLALPFMADAL----HSQMMRISSR  83
           TL+++ P +++ L    +  M+RI+ +
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGEH  87

139) fliQ in NC_011004


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 31.1 bits (98),  Expect = 0.057, Method: Compositional matrix adjust.
 Identities = 35/87 (41%), Positives = 61/87 (71%), Gaps = 4/87 (4%)

Query  1   MTGPETLDVARDAIWTIVVVSAPlmvvglvvgvavslvqalTQIQEQTLVFVPKILAMFV  60
           M ++E  +   + +W ++  S P+++V+ VVGV VSLVQALTQIQ+QTL F+ K+LA+ +
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  TLVLALPFMADAL----HSQMMRISSR  83
           TL+++ P +++ L    +  M+RI+ +
Sbjct  61  TLMVSYPWLSGILLNYTRQIMLRIGEH  87

140) bgla_2g02720 in NC_015376


> NC_006905_P3|45|G43|62180011|YP_216428.1|Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67|+|39407..39673|ssaS|SC1441|secretion 
system apparatus protein SsaS
Length=88

 Score = 30.3 bits (95),  Expect = 0.093, Method: Compositional matrix adjust.
 Identities = 36/81 (45%), Positives = 60/81 (75%), Gaps = 0/81 (0%)

Query  1   MDVDSLIRFTTQGMLLCLTVSLPPVIVAAVVGLGVSFVQAITSLQDQTLPQVIKLiavti  60
           M+   L +F TQ + + L  S+P V+VA+VVG+ VS+VQA+T +QDQTL  +IKL+A++I
Sbjct  1   MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI  60

Query  61  tiivaapvccaavLHFANQMM  81
           T++V+ P   + +L+++ Q+M
Sbjct  61  TLMVSYPWLSGILLNYTRQIM  81