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Homologs of hrpO gene of NC_004578_P1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) Psyr_1212
( YP_234304.1 )

type III secretion protein HrpO

NC_007005
(Pseudomonas syringae B728a)

2e-54

2) hrpO
( NP_791226.1 )

type III secretion protein HrpO

NC_004578
(Pseudomonas syringae DC3000)

1e-53

100

3) hrpO
( YP_273548.1 )

type III secretion component protein HrpO

NC_005773
(Pseudomonas syringae 1448A)

3e-46

4) Pmen_0042
( YP_001185548.1 )

hypothetical protein

NC_009439
(Pseudomonas mendocina ymp)

2e-24

• Sequence Alignments

1) Psyr_1212 in NC_007005


> NC_004578_P1|45|G36|28868607|NP_791226.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|34186..34632|hrpO|PSPTO_1399|type 
III secretion protein HrpO
Length=148

 Score =  205 bits (762),  Expect = 2e-54, Method: Compositional matrix adjust.
 Identities = 127/148 (86%), Positives = 141/148 (96%), Gaps = 0/148 (0%)

Query  1    MDEPLEDDPQQVALQQVIGLLTPLRQHRQASAERAHRQAQLELKSMLDHLAETRASLNQE  60
            MDE LE+DPQ+ AL+QVI+LLTPLRQHRQASAERAHRQAQ+ELKSMLDHL+ETRASL+QE
Sbjct  1    MDETLEEDPQREALEQVISLLTPLRQHRQASAERAHRQAQVELKSMLDHLSETRASLDQE  60

Query  61   RDNHKRRRESLSHAHLQKTLSLTDVDGWHEKERTMLDRLACIRQDVEQQQMRVAEQQALL  120
            RDNHKRRRESLS+ HLQKT+SL DVD WHEKE+ MLDRLA IRQDV+QQQ+RVAEQQ+LL
Sbjct  61   RDNHKRRRESLSQDHLQKTISLNDVDRWHEKEKNMLDRLAFIRQDVQQQQLRVAEQQTLL  120

Query  121  EQKRLQAKASQRAVEKLACMEETLNEEG  148
            E+KRLQAKASQRAVEKLACMEETLNEEG
Sbjct  121  EHKRLQAKASQRAVEKLACMEETLNEEG  148

2) hrpO in NC_004578


> NC_004578_P1|45|G36|28868607|NP_791226.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|34186..34632|hrpO|PSPTO_1399|type 
III secretion protein HrpO
Length=148

 Score =  203 bits (753),  Expect = 1e-53, Method: Compositional matrix adjust.
 Identities = 148/148 (100%), Positives = 148/148 (100%), Gaps = 0/148 (0%)

Query  1    MDETLEEDPQREALEQVISLLTPLRQHRQASAERAHRQAQVELKSMLDHLSETRASLDQE  60
            MDETLEEDPQREALEQVISLLTPLRQHRQASAERAHRQAQVELKSMLDHLSETRASLDQE
Sbjct  1    MDETLEEDPQREALEQVISLLTPLRQHRQASAERAHRQAQVELKSMLDHLSETRASLDQE  60

Query  61   RDNHKRRRESLSQDHLQKTISLNDVDRWHEKEKNMLDRLAFIrqdvqqqqlrvaeqqTLL  120
            RDNHKRRRESLSQDHLQKTISLNDVDRWHEKEKNMLDRLAFIRQDVQQQQLRVAEQQTLL
Sbjct  61   RDNHKRRRESLSQDHLQKTISLNDVDRWHEKEKNMLDRLAFIRQDVQQQQLRVAEQQTLL  120

Query  121  EHKRLQAKASQRAVEKLACMEETLNEEG  148
            EHKRLQAKASQRAVEKLACMEETLNEEG
Sbjct  121  EHKRLQAKASQRAVEKLACMEETLNEEG  148

3) hrpO in NC_005773


> NC_004578_P1|45|G36|28868607|NP_791226.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|34186..34632|hrpO|PSPTO_1399|type 
III secretion protein HrpO
Length=148

 Score =  177 bits (657),  Expect = 3e-46, Method: Compositional matrix adjust.
 Identities = 132/148 (90%), Positives = 143/148 (97%), Gaps = 0/148 (0%)

Query  1    MEDTLEDDPQRAALEQVISLLTPLRQHRQASAERAHRHAQVELKSMLDHLSKIRASLDQE  60
            M++TLE+DPQR ALEQVISLLTPLRQHRQASAERAHR+AQVELKSMLDHLS  RASLDQE
Sbjct  1    MDETLEEDPQREALEQVISLLTPLRQHRQASAERAHRQAQVELKSMLDHLSETRASLDQE  60

Query  61   RDNHKRRREGLSQEHLEKTISPNDIDRWHEKEKHMLDRLACIrqdvqqqqlrvaeqqall  120
            RDNHKRRRE+LSQ+HL+KTIS ND+DRWHEKEK+MLDRLA IRQDVQQQQLRVAEQQ+LL
Sbjct  61   RDNHKRRRESLSQDHLQKTISLNDVDRWHEKEKNMLDRLAFIRQDVQQQQLRVAEQQTLL  120

Query  121  eqKRLQAKASQRAVEKLACMEETLNEEG  148
            E+KRLQAKASQRAVEKLACMEETLNEEG
Sbjct  121  EHKRLQAKASQRAVEKLACMEETLNEEG  148

4) Pmen_0042 in NC_009439


> NC_004578_P1|45|G36|28868607|NP_791226.1|Pseudomonas_syringae_pv._tomato_str._DC3000|-|34186..34632|hrpO|PSPTO_1399|type 
III secretion protein HrpO
Length=148

 Score =  105 bits (381),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 78/148 (53%), Positives = 115/148 (78%), Gaps = 0/148 (0%)

Query  1    MEDELEADPQRLALEQAIQVLRPLRQHRQASAERQQRQMQQTLASSRERLAETRERLGSe  60
            M++ LE DPQR ALEQ I +L PLRQHRQASAER +RQ Q  L S  ++L+ETR  L+ E
Sbjct  1    MDETLEEDPQREALEQVISLLTPLRQHRQASAERAHRQAQVELKSMLDHLSETRASLDQE  60

Query  61   rqaqlarrealaqqHVDRCLSLDEVELWHNQERAMLDRLAHMRQDIHRQGLAIEqqqhql  120
            R+ +  RRE+L+Q+H+++ +SL++V+ WH++E+ MLDRLA +RQD+++Q L + +QQ  L
Sbjct  61   RDNHKRRRESLSQDHLQKTISLNDVDRWHEKEKNMLDRLAFIRQDVQQQQLRVAEQQTLL  120

Query  121  qvmqaqAKAAQRAVEKLSCLAEAINDEN  148
            +  + QAKA+QRAVEKL+C+ E++N+E 
Sbjct  121  EHKRLQAKASQRAVEKLACMEETLNEEG  148