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Homologs of safC gene of NC_003198_P1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) safC
( NP_454907.1 )

outer-membrane fimbrial usher protein

NC_003198
(Salmonella enterica CT18)

0.0

100

2) STBHUCCB_27130
( YP_005218227.1 )

Outer-membrane fimbrial usher protein

NC_016832
(Salmonella enterica P-stx-12)

0.0

100

3) safC
( NP_806279.1 )

outer-membrane fimbrial usher protein

NC_004631
(Salmonella enterica Ty2)

0.0

100

4) TY21A_12985
( YP_007926852.1 )

outer-membrane fimbrial usher protein

NC_021176
(Salmonella enterica Ty21a)

0.0

100

5) SBOV02431
( YP_008504137.1 )

outer-membrane fimbrial usher protein

NC_022241
(Salmonella enterica 3114)

0.0

6) SeSA_A0338
( YP_002113317.1 )

outer-membrane fimbrial usher protein

NC_011094
(Salmonella enterica CVM19633)

0.0

7) SNSL254_A0338
( YP_002039542.1 )

outer-membrane fimbrial usher protein

NC_011080
(Salmonella enterica SL254)

0.0

8) SN31241_12980
( YP_008359215.1 )

Outer-membrane fimbrial usher protein

NC_021902
(Salmonella enterica USMARC-S3124.1)

0.0

9) I137_12500
( YP_008381919.1 )

pilin outer membrane usher protein SafC

NC_021984
(Salmonella enterica S06004)

0.0

10) safC
( YP_008482256.1 )

salmonella atypical fimbria outer membrane usher

NC_022221
(Salmonella enterica CDC1983-67)

0.0

11) safC
( YP_005213799.1 )

atypical fimbria outer membrane usher

NC_016831
(Salmonella enterica RKS5078)

0.0

12) safC
( YP_215281.1 )

fimbriae usher

NC_006905
(Salmonella enterica SC-B67)

0.0

13) CFSAN002050_08105
( YP_008259556.1 )

pilin outer membrane usher protein SafC

NC_021818
(Salmonella enterica CFSAN002050)

0.0

14) SPAB_03304
( YP_001589497.1 )

hypothetical protein

NC_010102
(Salmonella enterica SGSC4150; SPB7)

0.0

15) SeAg_B0331
( YP_002145281.1 )

outer-membrane fimbrial usher protein

NC_011149
(Salmonella enterica SL483)

0.0

16) SSPA2300
( YP_002143146.1 )

outer-membrane fimbrial usher protein

NC_011147
(Salmonella enterica AKU12601)

0.0

17) safC
( YP_151652.1 )

outer-membrane fimbrial usher protein

NC_006511
(Salmonella enterica ATCC 9150)

0.0

18) SE451236_07535
( YP_008264556.1 )

pilin outer membrane usher protein SafC

NC_021820
(Salmonella enterica 08-1736)

0.0

19) safC
( YP_005235973.1 )

putative fimbrial usher

NC_016856
(Salmonella enterica 14028S)

0.0

20) CFSAN001921_15885
( YP_008256523.1 )

pilin outer membrane usher protein SafC

NC_021814
(Salmonella enterica CFSAN001921)

0.0

21) STMMW_03111
( YP_005231378.1 )

atypical fimbria outer membrane usher

NC_016854
(Salmonella enterica D23580)

0.0

22) safC
( NP_459299.1 )

fimbrial usher

NC_003197
(Salmonella enterica LT2)

0.0

23) safC
( YP_005180226.1 )

atypical fimbria outer membrane usher

NC_016810
(Salmonella enterica SL1344)

0.0

24) safC
( YP_005241247.1 )

putative fimbrial usher

NC_016857
(Salmonella enterica ST4/74)

0.0

25) STMDT12_C03000
( YP_005245996.1 )

putative fimbrial usher protein

NC_016860
(Salmonella enterica T000240)

0.0

26) STU288_13220
( YP_007903737.1 )

pilin outer membrane usher protein SafC

NC_021151
(Salmonella enterica U288)

0.0

27) safC
( YP_005250867.1 )

putative fimbrial usher

NC_016863
(Salmonella enterica UK-1)

0.0

28) SeD_A0330
( YP_002214256.1 )

outer-membrane fimbrial usher protein

NC_011205
(Salmonella enterica CT_02021853)

0.0

29) SEEB0189_17835
( YP_008309858.1 )

pilin outer membrane usher protein SafC

NC_021844
(Salmonella enterica CFSAN000189)

0.0

30) safC
( YP_002242437.1 )

atypical fimbria outer membrane usher

NC_011294
(Salmonella enterica P125109)

0.0

31) safC
( YP_005395804.1 )

atypical fimbria outer membrane usher

NC_017046
(Salmonella enterica 798)

0.0

32) PSPPH_A0064
( YP_272180.1 )

outer-membrane fimbrial usher protein

NC_007274
(Pseudomonas syringae 1448A)

0.0

33) aafC
( YP_006099162.1 )

aggregative adherence fimbria II usher protein

NC_017627
(Escherichia coli 042)

0.0

34) YPK_2757
( YP_001721487.1 )

fimbrial biogenesis outer membrane usher protein

NC_010465
(Yersinia pseudotuberculosis YPIII)

0.0

35) YE105_C2661
( YP_004298860.1 )

outer membrane usher protein

NC_015224
(Yersinia enterocolitica 105.5R(r))

2e-177

36) Y11_03331
( YP_006003832.1 )

outer membrane usher protein psaC

NC_017564
(Yersinia enterocolitica Y11)

2e-177

37) psaC
( NP_992653.1 )

outer membrane usher protein PsaC

NC_005810
(Yersinia pestis 91001)

2e-176

38) psaC
( YP_002346330.1 )

outer membrane usher protein PsaC

NC_003143
(Yersinia pestis CO92)

2e-176

39) psaC
( YP_005624703.1 )

outer membrane usher protein PsaC

NC_017265
(Yersinia pestis Harbin 35)

2e-176

40) psaC
( NP_670180.1 )

outer membrane usher protein PsaC precursor

NC_004088
(Yersinia pestis KIM)

2e-176

41) A1122_20415
( YP_005523714.1 )

outer membrane usher protein PsaC

NC_017168
(Yersinia pestis A1122)

6e-176

42) YpAngola_A1531
( YP_001606040.1 )

outer membrane usher protein PsaC

NC_010159
(Yersinia pestis Angola)

6e-176

43) YPA_1022
( YP_650934.1 )

outer membrane usher protein PsaC

NC_008150
(Yersinia pestis Antiqua)

6e-176

44) YPD4_1154
( YP_005504365.1 )

outer membrane usher protein PsaC

NC_017154
(Yersinia pestis D106004)

6e-176

45) YPN_2674
( YP_648602.1 )

outer membrane usher protein PsaC

NC_008149
(Yersinia pestis Nepal516)

6e-176

46) YPDSF_2392
( YP_001163740.1 )

outer membrane usher protein PsaC

NC_009381
(Yersinia pestis Pestoides F)

6e-176

47) YPZ3_1193
( YP_003567365.1 )

outer membrane usher protein PsaC

NC_014029
(Yersinia pestis Z176003)

6e-176

48) YpsIP31758_2676
( YP_001401641.1 )

fimbrial usher protein

NC_009708
(Yersinia pseudotuberculosis IP 31758)

6e-176

49) psaC
( YP_069868.1 )

outer membrane usher protein PsaC

NC_006155
(Yersinia pseudotuberculosis IP 32953)

6e-176

50) YPTS_1431
( YP_001871860.1 )

fimbrial biogenesis outer membrane usher protein

NC_010634
(Yersinia pseudotuberculosis PB1/+)

6e-176

51) caf1A
( NP_995524.1 )

putative F1 capsule anchoring protein

NC_005815
(Yersinia pestis 91001)

1e-174

52) A1122_21617
( YP_005523918.1 )

putative F1 capsule anchoring protein

NC_017169
(Yersinia pestis A1122)

1e-174

53) YPA_MT0069
( YP_636756.1 )

F1 capsule anchoring protein

NC_008120
(Yersinia pestis Antiqua)

1e-174

54) caf1A
( NP_395429.1 )

putative F1 capsule anchoring protein

NC_003134
(Yersinia pestis CO92)

1e-174

55) caf1A
( YP_005507054.1 )

putative F1 capsule anchoring protein

NC_017158
(Yersinia pestis D182038)

1e-174

56) caf1A
( YP_005626400.1 )

putative F1 capsule anchoring protein

NC_017266
(Yersinia pestis Harbin 35)

1e-174

57) Y1099
( NP_857880.1 )

F1 capsule

NC_004838
(Yersinia pestis KIM)

1e-174

58) YPN_MT0065
( YP_636640.1 )

F1 capsule anchoring protein

NC_008118
(Yersinia pestis Nepal516)

1e-174

59) YPDSF_4097
( YP_001154729.1 )

F1 capsule anchoring protein

NC_009378
(Yersinia pestis Pestoides F)

1e-174

60) ECSE_P2-0002
( YP_002291151.1 )

putative fimbrial usher protein

NC_011413
(Escherichia coli SE11)

7e-173

61) caf1A
( YP_005506899.1 )

putative F1 capsule anchoring protein

NC_017155
(Yersinia pestis D106004)

6e-172

62) caf1A
( YP_003565787.1 )

putative F1 capsule anchoring protein

NC_014022
(Yersinia pestis Z176003)

6e-172

63) D781_3832
( YP_007346211.1 )

P pilus assembly protein, porin PapC

NC_020064
(Serratia marcescens FGI94)

2e-171

64) SN31241_6420
( YP_008358560.1 )

Fimbrial usher protein

NC_021902
(Salmonella enterica USMARC-S3124.1)

1e-169

65) O3M_26187
( YP_006772795.1 )

Outer membrane usher protein Agg3C

NC_018654
(Escherichia coli 2009EL-2050)

3e-167

66) O3O_26297
( YP_006786921.1 )

Outer membrane usher protein Agg3C

NC_018662
(Escherichia coli 2009EL-2071)

3e-167

67) O3K_26207
( YP_006792567.1 )

Outer membrane usher protein Agg3C

NC_018666
(Escherichia coli 2011C-3493)

3e-167

68) myfC
( YP_001005762.1 )

outer membrane usher protein

NC_008800
(Yersinia enterocolitica 8081)

1e-163

69) Spro_1053
( YP_001477285.1 )

fimbrial biogenesis outer membrane usher protein

NC_009832
(Serratia proteamaculans 568)

1e-155

70) Spro_2874
( YP_001479103.1 )

fimbrial biogenesis outer membrane usher protein

NC_009832
(Serratia proteamaculans 568)

1e-151

71) Y11_30771
( YP_006006576.1 )

type 1 fimbriae anchoring protein FimD

NC_017564
(Yersinia enterocolitica Y11)

3e-143

72) ECENHK_06965
( YP_006577900.1 )

outer membrane usher protein lpfC

NC_018405
(Enterobacter cloacae ENHKU01)

7e-143

73) ECENHK_08570
( YP_006578215.1 )

outer membrane usher protein SfmD

NC_018405
(Enterobacter cloacae ENHKU01)

2e-142

74) lpfC
( YP_003209764.1 )

outer membrane usher protein lpfC

NC_013282
(Cronobacter turicensis z3032)

2e-142

75) CFSAN001992_05635
( YP_007470885.1 )

outer membrane usher protein SfmD

NC_020307
(Salmonella enterica CFSAN001992)

2e-142

76) SeSA_A1271
( YP_002114200.1 )

outer membrane usher protein SfmD

NC_011094
(Salmonella enterica CVM19633)

2e-142

77) psaC
( YP_005508071.1 )

outer membrane usher protein PsaC

NC_017160
(Yersinia pestis D182038)

5e-140

78) ES15_2634
( YP_006343718.1 )

outer membrane usher protein LpfC

NC_017933
(Cronobacter sakazakii ES15)

8e-137

79) ESA_02540
( YP_001438621.1 )

hypothetical protein

NC_009778
(Cronobacter sakazakii ATCC BAA-894)

2e-136

80) Entcl_2157
( YP_003941695.1 )

fimbrial biogenesis outer membrane usher protein

NC_014618
(Enterobacter cloacae SCF1)

2e-136

81) CSSP291_12035
( YP_007441279.1 )

hypothetical protein

NC_020260
(Cronobacter sakazakii Sp291)

5e-136

82) SARI_01797
( YP_001570825.1 )

hypothetical protein

NC_010067
(Salmonella enterica RSK2980)

1e-135

83) A225_4163
( YP_006499855.1 )

type 1 fimbriae anchoring protein FimD

NC_018106
(Klebsiella oxytoca E718)

4e-131

84) KOX_26315
( YP_005021211.1 )

outer membrane usher protein SfmD

NC_016612
(Klebsiella oxytoca KCTC 1686)

4e-131

85) KOX_22315
( YP_005020422.1 )

Fimbrial biogenesis outer membrane usher protein

NC_016612
(Klebsiella oxytoca KCTC 1686)

3e-118

• Sequence Alignments

1) safC in NC_003198


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score = 1303 bits (4944),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 836/836 (100%), Positives = 836/836 (100%), Gaps = 0/836 (0%)

Query  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60
            MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN
Sbjct  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60

Query  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA  120
            GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA
Sbjct  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA  120

Query  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180
            IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD
Sbjct  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180

Query  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240
            MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG
Sbjct  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240

Query  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300
            QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT
Sbjct  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300

Query  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360
            VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR
Sbjct  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360

Query  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAAslglggslgrwgslsVDGSDT  420
            SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDT
Sbjct  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDT  420

Query  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480
            HSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW
Sbjct  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480

Query  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540
            SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS
Sbjct  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540

Query  541  LNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600
            LNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE
Sbjct  541  LNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600

Query  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI  660
            AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI
Sbjct  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI  660

Query  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD  720
            VIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD
Sbjct  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD  720

Query  721  PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ  780
            PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ
Sbjct  721  PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ  780

Query  781  DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR  836
            DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR
Sbjct  781  DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR  836

2) STBHUCCB_27130 in NC_016832


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score = 1303 bits (4944),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 836/836 (100%), Positives = 836/836 (100%), Gaps = 0/836 (0%)

Query  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60
            MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN
Sbjct  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60

Query  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA  120
            GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA
Sbjct  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA  120

Query  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180
            IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD
Sbjct  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180

Query  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240
            MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG
Sbjct  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240

Query  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300
            QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT
Sbjct  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300

Query  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360
            VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR
Sbjct  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360

Query  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAAslglggslgrwgslsVDGSDT  420
            SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDT
Sbjct  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDT  420

Query  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480
            HSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW
Sbjct  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480

Query  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540
            SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS
Sbjct  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540

Query  541  LNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600
            LNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE
Sbjct  541  LNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600

Query  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI  660
            AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI
Sbjct  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI  660

Query  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD  720
            VIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD
Sbjct  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD  720

Query  721  PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ  780
            PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ
Sbjct  721  PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ  780

Query  781  DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR  836
            DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR
Sbjct  781  DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR  836

3) TY21A_12985 in NC_021176


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score = 1303 bits (4944),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 836/836 (100%), Positives = 836/836 (100%), Gaps = 0/836 (0%)

Query  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60
            MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN
Sbjct  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60

Query  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA  120
            GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA
Sbjct  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA  120

Query  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180
            IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD
Sbjct  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180

Query  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240
            MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG
Sbjct  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240

Query  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300
            QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT
Sbjct  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300

Query  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360
            VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR
Sbjct  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360

Query  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAAslglggslgrwgslsVDGSDT  420
            SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDT
Sbjct  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDT  420

Query  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480
            HSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW
Sbjct  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480

Query  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540
            SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS
Sbjct  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540

Query  541  LNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600
            LNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE
Sbjct  541  LNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600

Query  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI  660
            AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI
Sbjct  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI  660

Query  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD  720
            VIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD
Sbjct  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD  720

Query  721  PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ  780
            PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ
Sbjct  721  PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ  780

Query  781  DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR  836
            DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR
Sbjct  781  DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR  836

4) safC in NC_004631


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score = 1303 bits (4944),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 836/836 (100%), Positives = 836/836 (100%), Gaps = 0/836 (0%)

Query  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60
            MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN
Sbjct  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60

Query  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA  120
            GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA
Sbjct  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA  120

Query  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180
            IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD
Sbjct  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180

Query  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240
            MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG
Sbjct  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240

Query  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300
            QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT
Sbjct  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300

Query  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360
            VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR
Sbjct  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360

Query  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAAslglggslgrwgslsVDGSDT  420
            SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDT
Sbjct  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDT  420

Query  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480
            HSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW
Sbjct  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480

Query  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540
            SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS
Sbjct  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540

Query  541  LNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600
            LNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE
Sbjct  541  LNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600

Query  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI  660
            AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI
Sbjct  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI  660

Query  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD  720
            VIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD
Sbjct  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD  720

Query  721  PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ  780
            PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ
Sbjct  721  PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ  780

Query  781  DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR  836
            DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR
Sbjct  781  DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR  836

5) SBOV02431 in NC_022241


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score = 1283 bits (4867),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 822/836 (99%), Positives = 829/836 (99%), Gaps = 0/836 (0%)

Query  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60
            MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN
Sbjct  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60

Query  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA  120
            GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA
Sbjct  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA  120

Query  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGISPEDLWDDGIPAFLMNYSARTTQTDYKMD  180
            IPQAKAVLDINNQQLQLSIPQLALRPEFKGI+PEDLWDDGIPAFLMNYSARTTQTDYKMD
Sbjct  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180

Query  181  MERRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240
            M  RDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG
Sbjct  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240

Query  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300
            QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT
Sbjct  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300

Query  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360
            VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR
Sbjct  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360

Query  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGVSLGRWGSLSVDGSDT  420
            SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLG SLGRWGSLSVDGSDT
Sbjct  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDT  420

Query  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNFSLTRWQYASQGYNTLSDVLDSYRHDGNRLW  480
            HSQRQGEAVQQGASWRLRYSNQLTATGTN+ LTRWQYASQGYNTLSDVLDSYRH+GNRLW
Sbjct  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480

Query  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLTGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540
            SWRENLQPSSRTTLMLSQSWGRHLGNLSL GSRTDWRNRPGHDDSYGLSWGTSIGGGSLS
Sbjct  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540

Query  541  LNWNQNRTLWRNGAHSKENITSLWFSMSLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600
            LNWNQNRTLWRNG+H KENITSLWFSM+LSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE
Sbjct  541  LNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600

Query  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNggygllggdysysRAMRQMGVNIAGGI  660
            AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNG+YGLLGGDYSYSRAMRQMGVNIAGGI
Sbjct  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI  660

Query  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGGWPGVKTDFRGDTTVGNLSVYQENTVSLD  720
            VIHHHGVTLGQPLQGSVALVEAPGASGVPVG WPGVKTDFRGDTTVGNLSVYQENTVSLD
Sbjct  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD  720

Query  721  PSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ  780
            PS+LPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ
Sbjct  721  PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ  780

Query  781  DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR  836
            DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR
Sbjct  781  DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR  836

6) SNSL254_A0338 in NC_011080


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score = 1277 bits (4846),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 816/836 (98%), Positives = 827/836 (99%), Gaps = 0/836 (0%)

Query  1    MKFKHPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVD  60
            MKFK+PALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMV+
Sbjct  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60

Query  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLSA  120
            GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADL+A
Sbjct  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA  120

Query  121  IPQAKAVLDVNNQQLQLSIPQVALRTKFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180
            IPQAKAVLD+NNQQLQLSIPQ+ALR  FKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD
Sbjct  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180

Query  181  MVGRDNSSWVQLQPGINIGVWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240
            MVGRDNSSWVQLQPGINIG WRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG
Sbjct  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240

Query  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300
            QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT
Sbjct  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300

Query  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360
            VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR
Sbjct  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360

Query  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAAslglggslgrwgslsVDGSDT  420
            SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDT
Sbjct  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDT  420

Query  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNFFLTRWQYASQGYNTLSDVLDSYRHDGNRLW  480
            HSQRQGEAVQQGASWRLRYSNQLTATGTN+FLTRWQYASQGYNTLSDVLDSYRH+GNRLW
Sbjct  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480

Query  481  SWRDNLQPSSRTTLMLSQSWGRHLGNLSLTGSRTDWRNRLGHDDSYGLSWGTSIGGGSLS  540
            SWR+NLQPSSRTTLMLSQSWGRHLGNLSL GSRTDWRNR GHDDSYGLSWGTSIGGGSLS
Sbjct  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540

Query  541  LNWNQNRTLWRNGAHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600
            LNWNQNRTLWRNG+HRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE
Sbjct  541  LNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600

Query  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI  660
            AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI
Sbjct  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI  660

Query  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGGWLGVKTDFRGDTTVGNLSVYQENTVSLD  720
            VIHHHGVTLGQPLQGSVALVEAPGASGVPVG W GVKTDFRGDTTVGNLSVYQENTVSLD
Sbjct  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD  720

Query  721  PSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVTVNGQ  780
            PS+LPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQV VNGQ
Sbjct  721  PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ  780

Query  781  DGSAALVDTDSQVYLTGLADKGELTVKWGAQQCRVNYQLPAHKGIAGLYQMSGLCR  836
            DGSA LVDTDSQVYLTGLADKGELTVKWGAQQCRVNY+LPAHKGIAGLYQMSGLCR
Sbjct  781  DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR  836

7) SN31241_12980 in NC_021902


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score = 1277 bits (4846),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 816/836 (98%), Positives = 827/836 (99%), Gaps = 0/836 (0%)

Query  1    MKFKHPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVD  60
            MKFK+PALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMV+
Sbjct  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60

Query  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLSA  120
            GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADL+A
Sbjct  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA  120

Query  121  IPQAKAVLDVNNQQLQLSIPQVALRTKFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180
            IPQAKAVLD+NNQQLQLSIPQ+ALR  FKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD
Sbjct  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180

Query  181  MVGRDNSSWVQLQPGINIGVWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240
            MVGRDNSSWVQLQPGINIG WRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG
Sbjct  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240

Query  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300
            QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT
Sbjct  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300

Query  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360
            VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR
Sbjct  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360

Query  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAAslglggslgrwgslsVDGSDT  420
            SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDT
Sbjct  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDT  420

Query  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNFFLTRWQYASQGYNTLSDVLDSYRHDGNRLW  480
            HSQRQGEAVQQGASWRLRYSNQLTATGTN+FLTRWQYASQGYNTLSDVLDSYRH+GNRLW
Sbjct  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480

Query  481  SWRDNLQPSSRTTLMLSQSWGRHLGNLSLTGSRTDWRNRLGHDDSYGLSWGTSIGGGSLS  540
            SWR+NLQPSSRTTLMLSQSWGRHLGNLSL GSRTDWRNR GHDDSYGLSWGTSIGGGSLS
Sbjct  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540

Query  541  LNWNQNRTLWRNGAHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600
            LNWNQNRTLWRNG+HRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE
Sbjct  541  LNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600

Query  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI  660
            AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI
Sbjct  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI  660

Query  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGGWLGVKTDFRGDTTVGNLSVYQENTVSLD  720
            VIHHHGVTLGQPLQGSVALVEAPGASGVPVG W GVKTDFRGDTTVGNLSVYQENTVSLD
Sbjct  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD  720

Query  721  PSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVTVNGQ  780
            PS+LPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQV VNGQ
Sbjct  721  PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ  780

Query  781  DGSAALVDTDSQVYLTGLADKGELTVKWGAQQCRVNYQLPAHKGIAGLYQMSGLCR  836
            DGSA LVDTDSQVYLTGLADKGELTVKWGAQQCRVNY+LPAHKGIAGLYQMSGLCR
Sbjct  781  DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR  836

8) SeSA_A0338 in NC_011094


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score = 1277 bits (4843),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 817/836 (98%), Positives = 827/836 (99%), Gaps = 0/836 (0%)

Query  1    MKFKQPALLLFIAGVVHCANAHAYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60
            MKFKQPALLLFIAGVVHCANAH+YTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN
Sbjct  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60

Query  61   GKRVDTRDVVFKLEKDGQGTPFLAPCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA  120
            GKRVDTRDVVFKLEKDGQGTPFLA+CLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA
Sbjct  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA  120

Query  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180
            IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD
Sbjct  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180

Query  181  MERRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYPLKSRLTLG  240
            M  RDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLY+LKSRLTLG
Sbjct  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240

Query  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300
            QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT
Sbjct  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300

Query  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360
            VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR
Sbjct  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360

Query  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAAllglggslgrwgslsVDGSDT  420
            SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAA LGLGGSLGRWGSLSVDGSDT
Sbjct  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDT  420

Query  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNFFLTRWQYASQGYNTLSDVLDSYRHDGNRLW  480
            HSQRQGEAVQQGASWRLRYSNQLTATGTN+FLTRWQYASQGYNTLSDVLDSYRH+GNRLW
Sbjct  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480

Query  481  SWRDNLQPSSRTTLMLSQSWGRHLGNLSLTGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540
            SWR+NLQPSSRTTLMLSQSWGRHLGNLSL GSRTDWRNRPGHDDSYGLSWGTSIGGGSLS
Sbjct  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540

Query  541  LNWNQNRTLWRNGAHRKENITSLGFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600
            LNWNQNRTLWRNG+HRKENITSL FSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE
Sbjct  541  LNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600

Query  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMSQMGVNIAGGI  660
            AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAM QMGVNIAGGI
Sbjct  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI  660

Query  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGGWPGVKTDFRGDTTVGNLNVYQENTVSLD  720
            VIHHHGVTLGQPLQGSVALVEAPGASGVPVG WPGVKTDFRGDTTVGNL+VYQENTVSLD
Sbjct  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD  720

Query  721  PSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVTVNGQ  780
            PS+LPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQV VNGQ
Sbjct  721  PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ  780

Query  781  DGSAALVDTDSQVYLTGLADKGELTVKWGAQQCRVNYQLPAHKGIAGLYQMSGLCR  836
            DGSA LVDTDSQVYLTGLADKGELTVKWGAQQCRVNY+LPAHKGIAGLYQMSGLCR
Sbjct  781  DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR  836

9) I137_12500 in NC_021984


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score = 1276 bits (4842),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 820/836 (99%), Positives = 827/836 (99%), Gaps = 0/836 (0%)

Query  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60
            MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN
Sbjct  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60

Query  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA  120
            GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA
Sbjct  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA  120

Query  121  IPQAKAVVDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180
            IPQAKAV+DINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD
Sbjct  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180

Query  181  MERRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240
            M  RDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG
Sbjct  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240

Query  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300
            QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT
Sbjct  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300

Query  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPDQTPAIALHQGYLKYSLLAGRYR  360
            VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVP QTPAIALHQGYLKYSLLAGRYR
Sbjct  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360

Query  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGVSLGRWGSLSVDGSDT  420
            SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLG SLGRWGSLSVDGSDT
Sbjct  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDT  420

Query  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNFSLTRWQYASQGYNTLSDVLDSYRHDGNRLW  480
            HSQRQGEAVQQGASWRLRYSNQLTATGTN+ LTRWQYASQGYNTLSDVLDSYRH+GNRLW
Sbjct  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480

Query  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLTGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540
            SWRENLQPSSRTTLMLSQSWGRHLGNLSL GSRTDWRNRPGHDDSYGLSWGTSIGGGSLS
Sbjct  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540

Query  541  LNWNQNRTLWRNGAHSKENITSLWFSMSLSRWTGNNVSASWQMTSPSHGGQTQQVGGNGE  600
            LNWNQNRTLWRNG+H KENITSLWFSM+LSRWTGNNVSASWQMTSPSHGGQTQQVG NGE
Sbjct  541  LNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600

Query  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNggygllggdysysRAMRQMGVNIAGGI  660
            AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNG+YGLLGGDYSYSRAMRQMGVNIAGGI
Sbjct  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI  660

Query  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGGWPGVKTDFRGDTTVGNLSVYQENTVSLD  720
            VIHHHGVTLGQPLQGSVALVEAPGASGVPVG WPGVKTDFRGDTTVGNLSVYQENTVSLD
Sbjct  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD  720

Query  721  PSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ  780
            PS+LPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ
Sbjct  721  PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ  780

Query  781  DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR  836
            DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR
Sbjct  781  DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR  836

10) safC in NC_006905


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score = 1276 bits (4840),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 816/836 (98%), Positives = 826/836 (99%), Gaps = 0/836 (0%)

Query  1    MKLKQPALLLFIAGVVHCANAHAYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60
            MK+KQPALLLFIAGVVHCANAH+YTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN
Sbjct  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60

Query  61   GKRIDTRDVVFKLEKDGQGTPFLAPCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA  120
            GKR+DTRDVVFKLEKDGQGTPFLA+CLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA
Sbjct  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA  120

Query  121  IPQAKAVLDINNQQLQLSIPQLALRTKFKGIAPEDLWDDGIPAFLMNYSARTMQTDYKMD  180
            IPQAKAVLDINNQQLQLSIPQLALR  FKGIAPEDLWDDGIPAFLMNYSART QTDYKMD
Sbjct  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180

Query  181  MGRRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240
            M  RDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG
Sbjct  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240

Query  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300
            QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT
Sbjct  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300

Query  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360
            VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR
Sbjct  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360

Query  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGVSLGRWGSLSVDGSDT  420
            SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLG SLGRWGSLSVDGSDT
Sbjct  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDT  420

Query  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNFSLTRWQYASQGYNTLSDVLDSYRHDGNRLW  480
            HSQRQGEAVQQGASWRLRYSNQLTATGTN+ LTRWQYASQGYNTLSDVLDSYRH+GNRLW
Sbjct  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480

Query  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLTGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540
            SWRENLQPSSRTTLMLSQSWGRHLGNLSL GSRTDWRNRPGHDDSYGLSWGTSIGGGSLS
Sbjct  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540

Query  541  LNWNQNRTLWRNGAHRKENITSLWFSMSLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600
            LNWNQNRTLWRNG+HRKENITSLWFSM+LSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE
Sbjct  541  LNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600

Query  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNggygllggdysysRAMRQMGVNIAGGI  660
            AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNG+YGLLGGDYSYSRAMRQMGVNIAGGI
Sbjct  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI  660

Query  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGGWPGVKTDFRGDTTVGNLSVYQENTVSLD  720
            VIHHHGVTLGQPLQGSVALVEAPGASGVPVG WPGVKTDFRGDTTVGNLSVYQENTVSLD
Sbjct  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD  720

Query  721  PSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVTVNGQ  780
            PS+LPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQV VNGQ
Sbjct  721  PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ  780

Query  781  DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR  836
            DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR
Sbjct  781  DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR  836

11) safC in NC_022221


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score = 1276 bits (4840),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 819/836 (98%), Positives = 827/836 (99%), Gaps = 0/836 (0%)

Query  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60
            MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN
Sbjct  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60

Query  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA  120
            GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA
Sbjct  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA  120

Query  121  IPQAKAVVDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180
            IPQAKAV+DINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD
Sbjct  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180

Query  181  MERRDNSSWVQLQPGIDIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240
            M  RDNSSWVQLQPGI+IGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG
Sbjct  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240

Query  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300
            QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT
Sbjct  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300

Query  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPDQTPAIALHQGYLKYSLLAGRYR  360
            VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVP QTPAIALHQGYLKYSLLAGRYR
Sbjct  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360

Query  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGVSLGRWGSLSVDGSDT  420
            SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLG SLGRWGSLSVDGSDT
Sbjct  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDT  420

Query  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNFSLTRWQYASQGYNTLSDVLDSYRHDGNRLW  480
            HSQRQGEAVQQGASWRLRYSNQLTATGTN+ LTRWQYASQGYNTLSDVLDSYRH+GNRLW
Sbjct  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480

Query  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLTGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540
            SWRENLQPSSRTTLMLSQSWGRHLGNLSL GSRTDWRNRPGHDDSYGLSWGTSIGGGSLS
Sbjct  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540

Query  541  LNWNQNRTLWRNGAHSKENITSLWFSMSLSRWTGNNVSASWQMTSPSHGGQTQQVGGNGE  600
            LNWNQNRTLWRNG+H KENITSLWFSM+LSRWTGNNVSASWQMTSPSHGGQTQQVG NGE
Sbjct  541  LNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600

Query  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNggygllggdysysRAMRQMGVNIAGGI  660
            AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNG+YGLLGGDYSYSRAMRQMGVNIAGGI
Sbjct  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI  660

Query  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGGWPGVKTDFRGDTTVGNLSVYQENTVSLD  720
            VIHHHGVTLGQPLQGSVALVEAPGASGVPVG WPGVKTDFRGDTTVGNLSVYQENTVSLD
Sbjct  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD  720

Query  721  PSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ  780
            PS+LPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ
Sbjct  721  PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ  780

Query  781  DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR  836
            DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR
Sbjct  781  DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR  836

12) safC in NC_016831


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score = 1276 bits (4840),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 819/836 (98%), Positives = 827/836 (99%), Gaps = 0/836 (0%)

Query  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60
            MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN
Sbjct  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60

Query  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA  120
            GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA
Sbjct  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA  120

Query  121  IPQAKAVVDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180
            IPQAKAV+DINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD
Sbjct  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180

Query  181  MERRDNSSWVQLQPGIDIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240
            M  RDNSSWVQLQPGI+IGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG
Sbjct  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240

Query  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300
            QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT
Sbjct  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300

Query  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPDQTPAIALHQGYLKYSLLAGRYR  360
            VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVP QTPAIALHQGYLKYSLLAGRYR
Sbjct  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360

Query  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGVSLGRWGSLSVDGSDT  420
            SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLG SLGRWGSLSVDGSDT
Sbjct  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDT  420

Query  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNFSLTRWQYASQGYNTLSDVLDSYRHDGNRLW  480
            HSQRQGEAVQQGASWRLRYSNQLTATGTN+ LTRWQYASQGYNTLSDVLDSYRH+GNRLW
Sbjct  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480

Query  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLTGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540
            SWRENLQPSSRTTLMLSQSWGRHLGNLSL GSRTDWRNRPGHDDSYGLSWGTSIGGGSLS
Sbjct  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540

Query  541  LNWNQNRTLWRNGAHSKENITSLWFSMSLSRWTGNNVSASWQMTSPSHGGQTQQVGGNGE  600
            LNWNQNRTLWRNG+H KENITSLWFSM+LSRWTGNNVSASWQMTSPSHGGQTQQVG NGE
Sbjct  541  LNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600

Query  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNggygllggdysysRAMRQMGVNIAGGI  660
            AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNG+YGLLGGDYSYSRAMRQMGVNIAGGI
Sbjct  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI  660

Query  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGGWPGVKTDFRGDTTVGNLSVYQENTVSLD  720
            VIHHHGVTLGQPLQGSVALVEAPGASGVPVG WPGVKTDFRGDTTVGNLSVYQENTVSLD
Sbjct  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD  720

Query  721  PSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ  780
            PS+LPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ
Sbjct  721  PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ  780

Query  781  DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR  836
            DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR
Sbjct  781  DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR  836

13) SeAg_B0331 in NC_011149


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score = 1275 bits (4838),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 815/836 (98%), Positives = 827/836 (99%), Gaps = 0/836 (0%)

Query  1    MKFKQPALLLFIAGVVHCANAHAYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60
            MKFKQPALLLFIAGVVHCANAH+YTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN
Sbjct  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60

Query  61   GKRVDTRDVVFKLEKDGQGTPFLAPCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLSA  120
            GKRVDTRDVVFKLEKDGQGTPFLA+CLTVSQLSRYGVKTEDYPQLWKAAKTPDECADL+A
Sbjct  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA  120

Query  121  IPQAKAVLDINNQQLQLSIPQVALRTKFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180
            IPQAKAVLDINNQQLQLSIPQ+ALR  FKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD
Sbjct  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180

Query  181  MERRDNSSWVQLQPGINIGAWRVRNATSWQRSGQQSGKWQAAYTYAERGLYSLKSRLTLG  240
            M  RDNSSWVQLQPGINIGAWRVRNATSWQRS+Q SGKWQAAYTYAERGLYSLKSRLTLG
Sbjct  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240

Query  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300
            QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT
Sbjct  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300

Query  301  VAPGPFALRDLSVADSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360
            VAPGPFALRDLSV+DSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR
Sbjct  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360

Query  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAAslglggslgrwgslsVDGSDT  420
            SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDT
Sbjct  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDT  420

Query  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNFFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480
            HSQRQGEAVQQGASWRLRYSNQLTATGTN+FLTRWQYASQGYNTLSDVLDSYRHNGNRLW
Sbjct  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480

Query  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLTGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540
            SWRENLQPSSRTTLMLSQSWGRHLGNLSL GSRTDWRNRPGHDDSYGLSWGTSIGGGSLS
Sbjct  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540

Query  541  LNWNQNRTLWRNGAHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600
            LNWNQNRTLWRNG+HRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE
Sbjct  541  LNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600

Query  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI  660
            AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI
Sbjct  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI  660

Query  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGGWPGVKTDFRGDTTVGNLNVYQENTVSLD  720
            VIHHHGVTLGQPLQGSVALVEAPGASGVPVG WPGVKTDFRGDTTVGNL+VYQENTVSLD
Sbjct  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD  720

Query  721  PSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTHIGARALMTLKREDGSAIPFGAQVTVNGQ  780
            PS+LPDDAEVTQTDVRVVPTEGAVVEAKFHT+IGARALMTLKREDGSAIPFGAQV VNGQ
Sbjct  721  PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ  780

Query  781  DGSAALVDTDSQVYLTGLADKGELTVKWGAQQCRVNYQLPAHKGIAGLYQMSGLCR  836
            DGSA LVDTDSQVYLTGLADKGELTVKWGAQQCRVNY+LPAHKGIAGLYQMSGLCR
Sbjct  781  DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR  836

14) CFSAN002050_08105 in NC_021818


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score = 1275 bits (4839),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 815/836 (98%), Positives = 826/836 (99%), Gaps = 0/836 (0%)

Query  1    MKFKQPALLLFIAGVVHCANAHAYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60
            MKFKQPALLLFIAGVVHCANAH+YTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN
Sbjct  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60

Query  61   GKRVDTRDVVFKLEKDGQGTPFLAPCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLSA  120
            GKRVDTRDVVFKLEKDGQGTPFLA+CLTVSQLSRYGVKTEDYPQLWKAAKTPDECADL+A
Sbjct  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA  120

Query  121  IPQAKAVLDINNQQLQLSIPQVALRTKFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180
            IPQAKAVLDINNQQLQLSIPQ+ALR  FKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD
Sbjct  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180

Query  181  MERRDNSSWVQLQPGINIGAWRVRNATSWQRSGQQSGKWQAAYTYAERGLYSLKSRLTLG  240
            M  RDNSSWVQLQPGINIGAWRVRNATSWQRS+Q SGKWQAAYTYAERGLYSLKSRLTLG
Sbjct  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240

Query  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300
            QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT
Sbjct  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300

Query  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360
            VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR
Sbjct  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360

Query  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAAllglggslgrwgslsVDGSDT  420
            SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAA LGLGGSLGRWGSLSVDGSDT
Sbjct  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDT  420

Query  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNFFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480
            HSQRQGEAVQQGASWRLRYSNQLTATGTN+FLTRWQYASQGYNTLSDVLDSYRHNGNRLW
Sbjct  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480

Query  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLTGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540
            SWRENLQPSSRTTLMLSQSWGRHLGNLSL GSRTDWRNRPGHDDSYGLSWGTSIGGGSLS
Sbjct  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540

Query  541  LNWNQNRTLWRNGAHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600
            LNWNQNRTLWRNG+HRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE
Sbjct  541  LNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600

Query  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI  660
            AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI
Sbjct  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI  660

Query  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGGWPGVKTDFRGDTTVGNLNVYQENTVSLD  720
            VIHHHGVTLGQPLQGSVALVEAPGASGVPVG WPGVKTDFRGDTTVGNL+VYQENTVSLD
Sbjct  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD  720

Query  721  PSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTHIGARALMTLKREDGSAIPFGAQVTVNGQ  780
            PS+LPDDAEVTQTDVRVVPTEGAVVEAKFHT+IGARALMTLKREDGSAIPFGAQV VNGQ
Sbjct  721  PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ  780

Query  781  DGSAALVDTDSQVYLTGLADKGELTVKWGAQQCRVNYQLPAHKGIAGLYQMSGLCR  836
            DGSA LVDTDSQVYLTGLADKGELTVKWGAQQCRVNY+LPAHKGIAGLYQMSGLCR
Sbjct  781  DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR  836

15) SPAB_03304 in NC_010102


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score = 1275 bits (4839),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 815/836 (98%), Positives = 826/836 (99%), Gaps = 0/836 (0%)

Query  1    MKFKQPALLLFIAGVVHCANAHAYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60
            MKFKQPALLLFIAGVVHCANAH+YTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN
Sbjct  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60

Query  61   GKRVDTRDVVFKLEKDGQGTPFLAPCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLSA  120
            GKRVDTRDVVFKLEKDGQGTPFLA+CLTVSQLSRYGVKTEDYPQLWKAAKTPDECADL+A
Sbjct  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA  120

Query  121  IPQAKAVLDINNQQLQLSIPQVALRTKFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180
            IPQAKAVLDINNQQLQLSIPQ+ALR  FKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD
Sbjct  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180

Query  181  MERRDNSSWVQLQPGINIGAWRVRNATSWQRSGQQSGKWQAAYTYAERGLYSLKSRLTLG  240
            M  RDNSSWVQLQPGINIGAWRVRNATSWQRS+Q SGKWQAAYTYAERGLYSLKSRLTLG
Sbjct  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240

Query  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300
            QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT
Sbjct  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300

Query  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360
            VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR
Sbjct  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360

Query  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAAllglggslgrwgslsVDGSDT  420
            SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAA LGLGGSLGRWGSLSVDGSDT
Sbjct  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDT  420

Query  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNFFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480
            HSQRQGEAVQQGASWRLRYSNQLTATGTN+FLTRWQYASQGYNTLSDVLDSYRHNGNRLW
Sbjct  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480

Query  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLTGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540
            SWRENLQPSSRTTLMLSQSWGRHLGNLSL GSRTDWRNRPGHDDSYGLSWGTSIGGGSLS
Sbjct  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540

Query  541  LNWNQNRTLWRNGAHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600
            LNWNQNRTLWRNG+HRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE
Sbjct  541  LNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600

Query  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI  660
            AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI
Sbjct  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI  660

Query  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGGWPGVKTDFRGDTTVGNLNVYQENTVSLD  720
            VIHHHGVTLGQPLQGSVALVEAPGASGVPVG WPGVKTDFRGDTTVGNL+VYQENTVSLD
Sbjct  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD  720

Query  721  PSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTHIGARALMTLKREDGSAIPFGAQVTVNGQ  780
            PS+LPDDAEVTQTDVRVVPTEGAVVEAKFHT+IGARALMTLKREDGSAIPFGAQV VNGQ
Sbjct  721  PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ  780

Query  781  DGSAALVDTDSQVYLTGLADKGELTVKWGAQQCRVNYQLPAHKGIAGLYQMSGLCR  836
            DGSA LVDTDSQVYLTGLADKGELTVKWGAQQCRVNY+LPAHKGIAGLYQMSGLCR
Sbjct  781  DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR  836

16) SSPA2300 in NC_011147


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score = 1273 bits (4828),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 813/836 (98%), Positives = 824/836 (99%), Gaps = 0/836 (0%)

Query  1    MKFKQPALLLFIAGVVHCANAHAYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60
            MKFKQPALLLFIAGVVHCANAH+YTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN
Sbjct  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60

Query  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKPPDECADLTA  120
            GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAK PDECADLTA
Sbjct  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA  120

Query  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDIWDDGIPAFLMNYSARTTQTDYKMD  180
            IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPED+WDDGIPAFLMNYSARTTQTDYKMD
Sbjct  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180

Query  181  MERRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240
            M  RDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG
Sbjct  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240

Query  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300
            QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT
Sbjct  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300

Query  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360
            VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR
Sbjct  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360

Query  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGASLGRWGSLSVDGSDT  420
            SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLG+SLGRWGSLSVDGSDT
Sbjct  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDT  420

Query  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNFSLTRWQYASQGYNTLSDVLDSYRHDGNRLW  480
            HSQRQGEAVQQGASWRLRYSNQLTATGTN+ LTRWQYASQGYNTLSDVLDSYRH+GNRLW
Sbjct  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480

Query  481  SWRENLQPSSRTILMLSQSWGRHLGNLSLTGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540
            SWRENLQPSSRT LMLSQSWGRHLGNLSL GSRTDWRNRPGHDDSYGLSWGTSIGGGSLS
Sbjct  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540

Query  541  LNWNQNRTLWRNGAHSKENITSLWFSMSLSRWTGNNVSASWQMTSPSHGGQMQQVGGNGE  600
            LNWNQNRTLWRNG+H KENITSLWFSM+LSRWTGNNVSASWQMTSPSHGGQ QQVG NGE
Sbjct  541  LNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600

Query  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNggygllggdysysRAMRQMGVNIAGGI  660
            AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNG+YGLLGGDYSYSRAMRQMGVNIAGGI
Sbjct  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI  660

Query  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGGWPGVKTDFRGDTTVGNLNVYQENTVSLD  720
            VIHHHGVTLGQPLQGSVALVEAPGASGVPVG WPGVKTDFRGDTTVGNL+VYQENTVSLD
Sbjct  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD  720

Query  721  PSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVTVNGQ  780
            PS+LPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQV VNGQ
Sbjct  721  PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ  780

Query  781  DGSAALVDTDSQVYLTGLADKGELTVKWGAQQCRVNYQLPAHKGIAGLYQMSGLCR  836
            DGSA LVDTDSQVYLTGLADKGELTVKWGAQQCRVNY+LPAHKGIAGLYQMSGLCR
Sbjct  781  DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR  836

17) safC in NC_006511


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score = 1273 bits (4828),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 813/836 (98%), Positives = 824/836 (99%), Gaps = 0/836 (0%)

Query  1    MKFKQPALLLFIAGVVHCANAHAYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60
            MKFKQPALLLFIAGVVHCANAH+YTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN
Sbjct  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60

Query  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKPPDECADLTA  120
            GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAK PDECADLTA
Sbjct  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA  120

Query  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDIWDDGIPAFLMNYSARTTQTDYKMD  180
            IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPED+WDDGIPAFLMNYSARTTQTDYKMD
Sbjct  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180

Query  181  MERRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240
            M  RDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG
Sbjct  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240

Query  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300
            QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT
Sbjct  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300

Query  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360
            VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR
Sbjct  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360

Query  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGASLGRWGSLSVDGSDT  420
            SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLG+SLGRWGSLSVDGSDT
Sbjct  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDT  420

Query  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNFSLTRWQYASQGYNTLSDVLDSYRHDGNRLW  480
            HSQRQGEAVQQGASWRLRYSNQLTATGTN+ LTRWQYASQGYNTLSDVLDSYRH+GNRLW
Sbjct  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480

Query  481  SWRENLQPSSRTILMLSQSWGRHLGNLSLTGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540
            SWRENLQPSSRT LMLSQSWGRHLGNLSL GSRTDWRNRPGHDDSYGLSWGTSIGGGSLS
Sbjct  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540

Query  541  LNWNQNRTLWRNGAHSKENITSLWFSMSLSRWTGNNVSASWQMTSPSHGGQMQQVGGNGE  600
            LNWNQNRTLWRNG+H KENITSLWFSM+LSRWTGNNVSASWQMTSPSHGGQ QQVG NGE
Sbjct  541  LNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600

Query  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNggygllggdysysRAMRQMGVNIAGGI  660
            AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNG+YGLLGGDYSYSRAMRQMGVNIAGGI
Sbjct  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI  660

Query  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGGWPGVKTDFRGDTTVGNLNVYQENTVSLD  720
            VIHHHGVTLGQPLQGSVALVEAPGASGVPVG WPGVKTDFRGDTTVGNL+VYQENTVSLD
Sbjct  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD  720

Query  721  PSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVTVNGQ  780
            PS+LPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQV VNGQ
Sbjct  721  PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ  780

Query  781  DGSAALVDTDSQVYLTGLADKGELTVKWGAQQCRVNYQLPAHKGIAGLYQMSGLCR  836
            DGSA LVDTDSQVYLTGLADKGELTVKWGAQQCRVNY+LPAHKGIAGLYQMSGLCR
Sbjct  781  DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR  836

18) SE451236_07535 in NC_021820


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score = 1257 bits (4769),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 822/836 (99%), Positives = 828/836 (99%), Gaps = 0/836 (0%)

Query  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60
            MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN
Sbjct  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60

Query  61   GKRVDTRDVVFKLEKDGQGTPVLAPCLTVSQLSRYGVKTEDYPQLWKAAKPPDECADLTA  120
            GKRVDTRDVVFKLEKDGQGTP LA+CLTVSQLSRYGVKTEDYPQLWKAAK PDECADLTA
Sbjct  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA  120

Query  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180
            IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD
Sbjct  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180

Query  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240
            MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG
Sbjct  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240

Query  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300
            QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT
Sbjct  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300

Query  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360
            VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR
Sbjct  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360

Query  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAAllglggslgrwgslsVDGSDT  420
            SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAA LGLGGSLGRWGSLSVDGSDT
Sbjct  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDT  420

Query  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNFFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480
            HSQRQGEAVQQGASWRLRYSNQLTATGTN+FLTRWQYASQGYNTLSDVLDSYRHNGNRLW
Sbjct  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480

Query  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLTGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540
            SWRENLQPSSRTTLMLSQSWGRHLGNLSL GSRTDWRNRPGHDDSYGLSWGTSIGGGSLS
Sbjct  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540

Query  541  LNWNQNRTLWRNGAHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600
            LNWNQNRTLWRNG+HRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE
Sbjct  541  LNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600

Query  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNgdygllggdysysRAMRQMGVNIAGGI  660
            AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNG YGLLGGDYSYSRAMRQMGVNIAGGI
Sbjct  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI  660

Query  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGGWPGVKTDFRGDTTVGNLNVYQENTVSLD  720
            VIHHHGVTLGQPLQGSVALVEAPGASGVPVG WPGVKTDFRGDTTVGNL+VYQENTVSLD
Sbjct  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD  720

Query  721  PSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVTVNGQ  780
            PS+LPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQV VNGQ
Sbjct  721  PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ  780

Query  781  DGSAALVDTDSQVYLTGLADKGELTVKWGAQQCRVNYRLPAHKGIAGLYQMSGLCR  836
            DGSA LVDTDSQVYLTGLADKGELTVKWGAQQCRVNY+LPAHKGIAGLYQMSGLCR
Sbjct  781  DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR  836

19) safC in NC_016856


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score = 1257 bits (4769),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 822/836 (99%), Positives = 828/836 (99%), Gaps = 0/836 (0%)

Query  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60
            MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN
Sbjct  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60

Query  61   GKRVDTRDVVFKLEKDGQGTPVLAPCLTVSQLSRYGVKTEDYPQLWKAAKPPDECADLTA  120
            GKRVDTRDVVFKLEKDGQGTP LA+CLTVSQLSRYGVKTEDYPQLWKAAK PDECADLTA
Sbjct  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA  120

Query  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180
            IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD
Sbjct  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180

Query  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240
            MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG
Sbjct  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240

Query  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300
            QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT
Sbjct  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300

Query  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360
            VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR
Sbjct  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360

Query  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAAllglggslgrwgslsVDGSDT  420
            SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAA LGLGGSLGRWGSLSVDGSDT
Sbjct  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDT  420

Query  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNFFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480
            HSQRQGEAVQQGASWRLRYSNQLTATGTN+FLTRWQYASQGYNTLSDVLDSYRHNGNRLW
Sbjct  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480

Query  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLTGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540
            SWRENLQPSSRTTLMLSQSWGRHLGNLSL GSRTDWRNRPGHDDSYGLSWGTSIGGGSLS
Sbjct  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540

Query  541  LNWNQNRTLWRNGAHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600
            LNWNQNRTLWRNG+HRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE
Sbjct  541  LNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600

Query  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNgdygllggdysysRAMRQMGVNIAGGI  660
            AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNG YGLLGGDYSYSRAMRQMGVNIAGGI
Sbjct  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI  660

Query  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGGWPGVKTDFRGDTTVGNLNVYQENTVSLD  720
            VIHHHGVTLGQPLQGSVALVEAPGASGVPVG WPGVKTDFRGDTTVGNL+VYQENTVSLD
Sbjct  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD  720

Query  721  PSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVTVNGQ  780
            PS+LPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQV VNGQ
Sbjct  721  PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ  780

Query  781  DGSAALVDTDSQVYLTGLADKGELTVKWGAQQCRVNYRLPAHKGIAGLYQMSGLCR  836
            DGSA LVDTDSQVYLTGLADKGELTVKWGAQQCRVNY+LPAHKGIAGLYQMSGLCR
Sbjct  781  DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR  836

20) STMMW_03111 in NC_016854


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score = 1257 bits (4769),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 822/836 (99%), Positives = 828/836 (99%), Gaps = 0/836 (0%)

Query  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60
            MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN
Sbjct  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60

Query  61   GKRVDTRDVVFKLEKDGQGTPVLAPCLTVSQLSRYGVKTEDYPQLWKAAKPPDECADLTA  120
            GKRVDTRDVVFKLEKDGQGTP LA+CLTVSQLSRYGVKTEDYPQLWKAAK PDECADLTA
Sbjct  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA  120

Query  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180
            IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD
Sbjct  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180

Query  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240
            MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG
Sbjct  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240

Query  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300
            QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT
Sbjct  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300

Query  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360
            VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR
Sbjct  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360

Query  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAAllglggslgrwgslsVDGSDT  420
            SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAA LGLGGSLGRWGSLSVDGSDT
Sbjct  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDT  420

Query  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNFFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480
            HSQRQGEAVQQGASWRLRYSNQLTATGTN+FLTRWQYASQGYNTLSDVLDSYRHNGNRLW
Sbjct  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480

Query  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLTGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540
            SWRENLQPSSRTTLMLSQSWGRHLGNLSL GSRTDWRNRPGHDDSYGLSWGTSIGGGSLS
Sbjct  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540

Query  541  LNWNQNRTLWRNGAHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600
            LNWNQNRTLWRNG+HRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE
Sbjct  541  LNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600

Query  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNgdygllggdysysRAMRQMGVNIAGGI  660
            AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNG YGLLGGDYSYSRAMRQMGVNIAGGI
Sbjct  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI  660

Query  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGGWPGVKTDFRGDTTVGNLNVYQENTVSLD  720
            VIHHHGVTLGQPLQGSVALVEAPGASGVPVG WPGVKTDFRGDTTVGNL+VYQENTVSLD
Sbjct  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD  720

Query  721  PSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVTVNGQ  780
            PS+LPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQV VNGQ
Sbjct  721  PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ  780

Query  781  DGSAALVDTDSQVYLTGLADKGELTVKWGAQQCRVNYRLPAHKGIAGLYQMSGLCR  836
            DGSA LVDTDSQVYLTGLADKGELTVKWGAQQCRVNY+LPAHKGIAGLYQMSGLCR
Sbjct  781  DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR  836

21) safC in NC_003197


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score = 1257 bits (4769),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 822/836 (99%), Positives = 828/836 (99%), Gaps = 0/836 (0%)

Query  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60
            MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN
Sbjct  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60

Query  61   GKRVDTRDVVFKLEKDGQGTPVLAPCLTVSQLSRYGVKTEDYPQLWKAAKPPDECADLTA  120
            GKRVDTRDVVFKLEKDGQGTP LA+CLTVSQLSRYGVKTEDYPQLWKAAK PDECADLTA
Sbjct  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA  120

Query  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180
            IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD
Sbjct  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180

Query  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240
            MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG
Sbjct  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240

Query  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300
            QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT
Sbjct  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300

Query  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360
            VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR
Sbjct  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360

Query  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAAllglggslgrwgslsVDGSDT  420
            SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAA LGLGGSLGRWGSLSVDGSDT
Sbjct  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDT  420

Query  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNFFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480
            HSQRQGEAVQQGASWRLRYSNQLTATGTN+FLTRWQYASQGYNTLSDVLDSYRHNGNRLW
Sbjct  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480

Query  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLTGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540
            SWRENLQPSSRTTLMLSQSWGRHLGNLSL GSRTDWRNRPGHDDSYGLSWGTSIGGGSLS
Sbjct  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540

Query  541  LNWNQNRTLWRNGAHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600
            LNWNQNRTLWRNG+HRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE
Sbjct  541  LNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600

Query  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNgdygllggdysysRAMRQMGVNIAGGI  660
            AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNG YGLLGGDYSYSRAMRQMGVNIAGGI
Sbjct  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI  660

Query  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGGWPGVKTDFRGDTTVGNLNVYQENTVSLD  720
            VIHHHGVTLGQPLQGSVALVEAPGASGVPVG WPGVKTDFRGDTTVGNL+VYQENTVSLD
Sbjct  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD  720

Query  721  PSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVTVNGQ  780
            PS+LPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQV VNGQ
Sbjct  721  PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ  780

Query  781  DGSAALVDTDSQVYLTGLADKGELTVKWGAQQCRVNYRLPAHKGIAGLYQMSGLCR  836
            DGSA LVDTDSQVYLTGLADKGELTVKWGAQQCRVNY+LPAHKGIAGLYQMSGLCR
Sbjct  781  DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR  836

22) safC in NC_016810


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score = 1257 bits (4769),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 822/836 (99%), Positives = 828/836 (99%), Gaps = 0/836 (0%)

Query  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60
            MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN
Sbjct  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60

Query  61   GKRVDTRDVVFKLEKDGQGTPVLAPCLTVSQLSRYGVKTEDYPQLWKAAKPPDECADLTA  120
            GKRVDTRDVVFKLEKDGQGTP LA+CLTVSQLSRYGVKTEDYPQLWKAAK PDECADLTA
Sbjct  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA  120

Query  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180
            IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD
Sbjct  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180

Query  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240
            MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG
Sbjct  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240

Query  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300
            QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT
Sbjct  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300

Query  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360
            VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR
Sbjct  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360

Query  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAAllglggslgrwgslsVDGSDT  420
            SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAA LGLGGSLGRWGSLSVDGSDT
Sbjct  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDT  420

Query  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNFFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480
            HSQRQGEAVQQGASWRLRYSNQLTATGTN+FLTRWQYASQGYNTLSDVLDSYRHNGNRLW
Sbjct  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480

Query  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLTGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540
            SWRENLQPSSRTTLMLSQSWGRHLGNLSL GSRTDWRNRPGHDDSYGLSWGTSIGGGSLS
Sbjct  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540

Query  541  LNWNQNRTLWRNGAHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600
            LNWNQNRTLWRNG+HRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE
Sbjct  541  LNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600

Query  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNgdygllggdysysRAMRQMGVNIAGGI  660
            AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNG YGLLGGDYSYSRAMRQMGVNIAGGI
Sbjct  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI  660

Query  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGGWPGVKTDFRGDTTVGNLNVYQENTVSLD  720
            VIHHHGVTLGQPLQGSVALVEAPGASGVPVG WPGVKTDFRGDTTVGNL+VYQENTVSLD
Sbjct  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD  720

Query  721  PSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVTVNGQ  780
            PS+LPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQV VNGQ
Sbjct  721  PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ  780

Query  781  DGSAALVDTDSQVYLTGLADKGELTVKWGAQQCRVNYRLPAHKGIAGLYQMSGLCR  836
            DGSA LVDTDSQVYLTGLADKGELTVKWGAQQCRVNY+LPAHKGIAGLYQMSGLCR
Sbjct  781  DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR  836

23) safC in NC_016857


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score = 1257 bits (4769),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 822/836 (99%), Positives = 828/836 (99%), Gaps = 0/836 (0%)

Query  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60
            MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN
Sbjct  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60

Query  61   GKRVDTRDVVFKLEKDGQGTPVLAPCLTVSQLSRYGVKTEDYPQLWKAAKPPDECADLTA  120
            GKRVDTRDVVFKLEKDGQGTP LA+CLTVSQLSRYGVKTEDYPQLWKAAK PDECADLTA
Sbjct  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA  120

Query  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180
            IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD
Sbjct  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180

Query  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240
            MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG
Sbjct  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240

Query  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300
            QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT
Sbjct  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300

Query  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360
            VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR
Sbjct  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360

Query  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAAllglggslgrwgslsVDGSDT  420
            SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAA LGLGGSLGRWGSLSVDGSDT
Sbjct  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDT  420

Query  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNFFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480
            HSQRQGEAVQQGASWRLRYSNQLTATGTN+FLTRWQYASQGYNTLSDVLDSYRHNGNRLW
Sbjct  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480

Query  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLTGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540
            SWRENLQPSSRTTLMLSQSWGRHLGNLSL GSRTDWRNRPGHDDSYGLSWGTSIGGGSLS
Sbjct  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540

Query  541  LNWNQNRTLWRNGAHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600
            LNWNQNRTLWRNG+HRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE
Sbjct  541  LNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600

Query  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNgdygllggdysysRAMRQMGVNIAGGI  660
            AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNG YGLLGGDYSYSRAMRQMGVNIAGGI
Sbjct  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI  660

Query  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGGWPGVKTDFRGDTTVGNLNVYQENTVSLD  720
            VIHHHGVTLGQPLQGSVALVEAPGASGVPVG WPGVKTDFRGDTTVGNL+VYQENTVSLD
Sbjct  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD  720

Query  721  PSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVTVNGQ  780
            PS+LPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQV VNGQ
Sbjct  721  PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ  780

Query  781  DGSAALVDTDSQVYLTGLADKGELTVKWGAQQCRVNYRLPAHKGIAGLYQMSGLCR  836
            DGSA LVDTDSQVYLTGLADKGELTVKWGAQQCRVNY+LPAHKGIAGLYQMSGLCR
Sbjct  781  DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR  836

24) STMDT12_C03000 in NC_016860


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score = 1257 bits (4769),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 822/836 (99%), Positives = 828/836 (99%), Gaps = 0/836 (0%)

Query  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60
            MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN
Sbjct  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60

Query  61   GKRVDTRDVVFKLEKDGQGTPVLAPCLTVSQLSRYGVKTEDYPQLWKAAKPPDECADLTA  120
            GKRVDTRDVVFKLEKDGQGTP LA+CLTVSQLSRYGVKTEDYPQLWKAAK PDECADLTA
Sbjct  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA  120

Query  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180
            IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD
Sbjct  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180

Query  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240
            MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG
Sbjct  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240

Query  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300
            QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT
Sbjct  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300

Query  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360
            VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR
Sbjct  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360

Query  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAAllglggslgrwgslsVDGSDT  420
            SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAA LGLGGSLGRWGSLSVDGSDT
Sbjct  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDT  420

Query  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNFFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480
            HSQRQGEAVQQGASWRLRYSNQLTATGTN+FLTRWQYASQGYNTLSDVLDSYRHNGNRLW
Sbjct  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480

Query  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLTGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540
            SWRENLQPSSRTTLMLSQSWGRHLGNLSL GSRTDWRNRPGHDDSYGLSWGTSIGGGSLS
Sbjct  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540

Query  541  LNWNQNRTLWRNGAHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600
            LNWNQNRTLWRNG+HRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE
Sbjct  541  LNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600

Query  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNgdygllggdysysRAMRQMGVNIAGGI  660
            AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNG YGLLGGDYSYSRAMRQMGVNIAGGI
Sbjct  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI  660

Query  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGGWPGVKTDFRGDTTVGNLNVYQENTVSLD  720
            VIHHHGVTLGQPLQGSVALVEAPGASGVPVG WPGVKTDFRGDTTVGNL+VYQENTVSLD
Sbjct  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD  720

Query  721  PSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVTVNGQ  780
            PS+LPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQV VNGQ
Sbjct  721  PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ  780

Query  781  DGSAALVDTDSQVYLTGLADKGELTVKWGAQQCRVNYRLPAHKGIAGLYQMSGLCR  836
            DGSA LVDTDSQVYLTGLADKGELTVKWGAQQCRVNY+LPAHKGIAGLYQMSGLCR
Sbjct  781  DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR  836

25) STU288_13220 in NC_021151


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score = 1257 bits (4769),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 822/836 (99%), Positives = 828/836 (99%), Gaps = 0/836 (0%)

Query  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60
            MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN
Sbjct  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60

Query  61   GKRVDTRDVVFKLEKDGQGTPVLAPCLTVSQLSRYGVKTEDYPQLWKAAKPPDECADLTA  120
            GKRVDTRDVVFKLEKDGQGTP LA+CLTVSQLSRYGVKTEDYPQLWKAAK PDECADLTA
Sbjct  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA  120

Query  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180
            IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD
Sbjct  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180

Query  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240
            MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG
Sbjct  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240

Query  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300
            QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT
Sbjct  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300

Query  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360
            VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR
Sbjct  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360

Query  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAAllglggslgrwgslsVDGSDT  420
            SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAA LGLGGSLGRWGSLSVDGSDT
Sbjct  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDT  420

Query  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNFFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480
            HSQRQGEAVQQGASWRLRYSNQLTATGTN+FLTRWQYASQGYNTLSDVLDSYRHNGNRLW
Sbjct  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480

Query  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLTGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540
            SWRENLQPSSRTTLMLSQSWGRHLGNLSL GSRTDWRNRPGHDDSYGLSWGTSIGGGSLS
Sbjct  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540

Query  541  LNWNQNRTLWRNGAHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600
            LNWNQNRTLWRNG+HRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE
Sbjct  541  LNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600

Query  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNgdygllggdysysRAMRQMGVNIAGGI  660
            AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNG YGLLGGDYSYSRAMRQMGVNIAGGI
Sbjct  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI  660

Query  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGGWPGVKTDFRGDTTVGNLNVYQENTVSLD  720
            VIHHHGVTLGQPLQGSVALVEAPGASGVPVG WPGVKTDFRGDTTVGNL+VYQENTVSLD
Sbjct  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD  720

Query  721  PSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVTVNGQ  780
            PS+LPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQV VNGQ
Sbjct  721  PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ  780

Query  781  DGSAALVDTDSQVYLTGLADKGELTVKWGAQQCRVNYRLPAHKGIAGLYQMSGLCR  836
            DGSA LVDTDSQVYLTGLADKGELTVKWGAQQCRVNY+LPAHKGIAGLYQMSGLCR
Sbjct  781  DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR  836

26) safC in NC_016863


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score = 1257 bits (4769),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 822/836 (99%), Positives = 828/836 (99%), Gaps = 0/836 (0%)

Query  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60
            MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN
Sbjct  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60

Query  61   GKRVDTRDVVFKLEKDGQGTPVLAPCLTVSQLSRYGVKTEDYPQLWKAAKPPDECADLTA  120
            GKRVDTRDVVFKLEKDGQGTP LA+CLTVSQLSRYGVKTEDYPQLWKAAK PDECADLTA
Sbjct  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA  120

Query  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180
            IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD
Sbjct  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180

Query  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240
            MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG
Sbjct  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240

Query  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300
            QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT
Sbjct  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300

Query  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360
            VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR
Sbjct  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360

Query  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAAllglggslgrwgslsVDGSDT  420
            SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAA LGLGGSLGRWGSLSVDGSDT
Sbjct  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDT  420

Query  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNFFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480
            HSQRQGEAVQQGASWRLRYSNQLTATGTN+FLTRWQYASQGYNTLSDVLDSYRHNGNRLW
Sbjct  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480

Query  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLTGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540
            SWRENLQPSSRTTLMLSQSWGRHLGNLSL GSRTDWRNRPGHDDSYGLSWGTSIGGGSLS
Sbjct  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540

Query  541  LNWNQNRTLWRNGAHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600
            LNWNQNRTLWRNG+HRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE
Sbjct  541  LNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600

Query  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNgdygllggdysysRAMRQMGVNIAGGI  660
            AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNG YGLLGGDYSYSRAMRQMGVNIAGGI
Sbjct  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI  660

Query  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGGWPGVKTDFRGDTTVGNLNVYQENTVSLD  720
            VIHHHGVTLGQPLQGSVALVEAPGASGVPVG WPGVKTDFRGDTTVGNL+VYQENTVSLD
Sbjct  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD  720

Query  721  PSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVTVNGQ  780
            PS+LPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQV VNGQ
Sbjct  721  PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ  780

Query  781  DGSAALVDTDSQVYLTGLADKGELTVKWGAQQCRVNYRLPAHKGIAGLYQMSGLCR  836
            DGSA LVDTDSQVYLTGLADKGELTVKWGAQQCRVNY+LPAHKGIAGLYQMSGLCR
Sbjct  781  DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR  836

27) CFSAN001921_15885 in NC_021814


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score = 1257 bits (4769),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 822/836 (99%), Positives = 828/836 (99%), Gaps = 0/836 (0%)

Query  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60
            MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN
Sbjct  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60

Query  61   GKRVDTRDVVFKLEKDGQGTPVLAPCLTVSQLSRYGVKTEDYPQLWKAAKPPDECADLTA  120
            GKRVDTRDVVFKLEKDGQGTP LA+CLTVSQLSRYGVKTEDYPQLWKAAK PDECADLTA
Sbjct  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA  120

Query  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180
            IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD
Sbjct  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180

Query  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240
            MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG
Sbjct  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240

Query  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300
            QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT
Sbjct  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300

Query  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360
            VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR
Sbjct  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360

Query  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAAllglggslgrwgslsVDGSDT  420
            SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAA LGLGGSLGRWGSLSVDGSDT
Sbjct  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDT  420

Query  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNFFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480
            HSQRQGEAVQQGASWRLRYSNQLTATGTN+FLTRWQYASQGYNTLSDVLDSYRHNGNRLW
Sbjct  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480

Query  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLTGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540
            SWRENLQPSSRTTLMLSQSWGRHLGNLSL GSRTDWRNRPGHDDSYGLSWGTSIGGGSLS
Sbjct  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540

Query  541  LNWNQNRTLWRNGAHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600
            LNWNQNRTLWRNG+HRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE
Sbjct  541  LNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600

Query  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNgdygllggdysysRAMRQMGVNIAGGI  660
            AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNG YGLLGGDYSYSRAMRQMGVNIAGGI
Sbjct  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI  660

Query  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGGWPGVKTDFRGDTTVGNLNVYQENTVSLD  720
            VIHHHGVTLGQPLQGSVALVEAPGASGVPVG WPGVKTDFRGDTTVGNL+VYQENTVSLD
Sbjct  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD  720

Query  721  PSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVTVNGQ  780
            PS+LPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQV VNGQ
Sbjct  721  PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ  780

Query  781  DGSAALVDTDSQVYLTGLADKGELTVKWGAQQCRVNYRLPAHKGIAGLYQMSGLCR  836
            DGSA LVDTDSQVYLTGLADKGELTVKWGAQQCRVNY+LPAHKGIAGLYQMSGLCR
Sbjct  781  DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR  836

28) SeD_A0330 in NC_011205


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score = 1256 bits (4765),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 819/836 (98%), Positives = 828/836 (99%), Gaps = 0/836 (0%)

Query  1    MKFKQPALLLFIAGVVHCANAHAYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60
            MKFKQPALLLFIAGVVHCANAH+YTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN
Sbjct  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60

Query  61   GKRVDTRDVVFKLEKDGQGTPFLAPCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA  120
            GKRVDTRDVVFKLEKDGQGTPFLA+CLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA
Sbjct  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA  120

Query  121  IPQAKAVLDINNQQLQLSIPQVALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180
            IPQAKAVLDINNQQLQLSIPQ+ALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD
Sbjct  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180

Query  181  MERRDNSSWVQLQPGINIGAWRVRNATSWQRSGQLSGKWQAAYTYAERGLYSLKSRLTLG  240
            M  RDNSSWVQLQPGINIGAWRVRNATSWQRS+QLSGKWQAAYTYAERGLYSLKSRLTLG
Sbjct  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240

Query  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300
            QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT
Sbjct  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300

Query  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360
            VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR
Sbjct  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360

Query  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAAllglggslgrwgslsVDGSDT  420
            SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAA LGLGGSLGRWGSLSVDGSDT
Sbjct  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDT  420

Query  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNFFLTRWQYASQGYNTLSDVLDSYRHDGNRLW  480
            HSQRQGEAVQQGASWRLRYSNQLTATGTN+FLTRWQYASQGYNTLSDVLDSYRH+GNRLW
Sbjct  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480

Query  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLTGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540
            SWRENLQPSSRTTLMLSQSWGRHLGNLSL GSRTDWRNRPGHDDSYGLSWGTSIGGGSLS
Sbjct  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540

Query  541  LNWNQNRTLWRNGAHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600
            LNWNQNRTLWRNG+HRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE
Sbjct  541  LNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600

Query  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNgdygllggdysysRAMRQMGVNIAGGI  660
            AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNG YGLLGGDYSYSRAMRQMGVNIAGGI
Sbjct  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI  660

Query  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGGWPGVKTDFRGDTTVGNLNVYQENTVSLD  720
            VIHHHGVTLGQPLQGSVALVEAPGASGVPVG WPGVKTDFRGDTTVGNL+VYQENTVSLD
Sbjct  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD  720

Query  721  PSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVTVNGQ  780
            PS+LPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQV VNGQ
Sbjct  721  PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ  780

Query  781  DGSAALVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR  836
            DGSA LVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR
Sbjct  781  DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR  836

29) SEEB0189_17835 in NC_021844


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score = 1248 bits (4735),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 814/836 (98%), Positives = 825/836 (99%), Gaps = 0/836 (0%)

Query  1    MKFKQPALLLFIAGVVHCANAHAYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60
            MKFKQPALLLFIAGVVHCANAH+YTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN
Sbjct  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60

Query  61   GKRVDTRDVVFKLEKDGQGTPFLAPCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLSA  120
            GKRVDTRDVVFKLEKDGQGTPFLA+CLTVSQLSRYGVKTEDYPQLWKAAKTPDECADL+A
Sbjct  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA  120

Query  121  IPQAKAVLDINNQQLQLSIPQVALRTKFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180
            IPQAKAVLDINNQQLQLSIPQ+ALR  FKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD
Sbjct  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180

Query  181  MERRDNSSWVQLQPGINIGAWRVRNATSWQRSGQQSGKWQAAYTYAERGLYSLKSRLTLG  240
            M  RDNSSWVQLQPGINIGAWRVRNATSWQRS+Q SGKWQAAYTYAERGLYSLKSRLTLG
Sbjct  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240

Query  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300
            QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT
Sbjct  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300

Query  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360
            VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR
Sbjct  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360

Query  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAAllglggslgrwgslsVDGSDT  420
            SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAA LGLGGSLGRWGSLSVDGSDT
Sbjct  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDT  420

Query  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNFFLTRWQYASQGYNTLSDVLDSYRHDGNRLW  480
            HSQRQGEAVQQGASWRLRYSNQLTATGTN+FLTRWQYASQGYNTLSDVLDSYRH+GNRLW
Sbjct  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480

Query  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLTGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540
            SWRENLQPSSRTTLMLSQSWGRHLGNLSL GSRTDWRNRPGHDDSYGLSWGTSIGGGSLS
Sbjct  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540

Query  541  LNWNQNRTLWRNGAHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600
            LNWNQNRTLWRNG+HRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE
Sbjct  541  LNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600

Query  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNgdygllggdysysRAMRQMGVNIAGGI  660
            AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNG YGLLGGDYSYSRAMRQMGVNIAGGI
Sbjct  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI  660

Query  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGGWPGVKTDFRGDTTVGNLNVYQENTVSLD  720
            VIHHHGVTLGQPLQGSVALVEAPGASGVPVG WPGVKTDFRGDTTVGNL+VYQENTVSLD
Sbjct  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD  720

Query  721  PSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVTVNGQ  780
            PS+LPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQV VNGQ
Sbjct  721  PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ  780

Query  781  DGSAALVDTDSQVYLTGLADKGELTVKWGAQQCRVNYQLPAHKGIAGLYQMSGLCR  836
            DGSA LVDTDSQVYLTGLADKGELTVKWGAQQCRVNY+LPAHKGIAGLYQMSGLCR
Sbjct  781  DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR  836

30) safC in NC_011294


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score = 1223 bits (4638),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 816/836 (98%), Positives = 827/836 (99%), Gaps = 0/836 (0%)

Query  1    MKFKQPALLLFIAGVVHCANAHAYTFDASMLGDAAKGVDMSLFNLGVQQPGTYRVDVMVN  60
            MKFKQPALLLFIAGVVHCANAH+YTFDASMLGDAAKGVDMSLFN GVQQPGTYRVDVMVN
Sbjct  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60

Query  61   GKRVDTRDVVFKLEKDGQGTPFLAPCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA  120
            GKRVDTRDVVFKLEKDGQGTPFLA+CLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA
Sbjct  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA  120

Query  121  IPQAQAVLDinnqqlqlsisqlalRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180
            IPQA+AVLDINNQQLQLSI+QLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD
Sbjct  121  IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD  180

Query  181  MERRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240
            M  RDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG
Sbjct  181  MVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLG  240

Query  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300
            QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT
Sbjct  241  QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT  300

Query  301  VAPGPFALRDLSVADSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360
            VAPGPFALRDLSV+DSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR
Sbjct  301  VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR  360

Query  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAAslglggslgrwgslsVDGSDT  420
            SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDT
Sbjct  361  SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDT  420

Query  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNFFLTRWQYASQGYNTLSDVLDSYRHDGNRLW  480
            HSQRQGEAVQQGASWRLRYSNQLTATGTN+FLTRWQYASQGYNTLSDVLDSYRH+GNRLW
Sbjct  421  HSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLW  480

Query  481  SWRDNLQPSSRTTLMLSQSWGRHLGNLSLTGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540
            SWR+NLQPSSRTTLMLSQSWGRHLGNLSL GSRTDWRNRPGHDDSYGLSWGTSIGGGSLS
Sbjct  481  SWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS  540

Query  541  LNWNQNRTLWRNGAHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600
            LNWNQNRTLWRNG+HRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE
Sbjct  541  LNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE  600

Query  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNgdygllggdysysRAMRQMGANIAGGI  660
            AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNG YGLLGGDYSYSRAMRQMG NIAGGI
Sbjct  601  AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGI  660

Query  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGGWPGVKTDFRGDTTVGNLSVYQENTVSLD  720
            VIHHHGVTLGQPLQGSVALVEAPGASGVPVG WPGVKTDFRGDTTVGNLSVYQENTVSLD
Sbjct  661  VIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLD  720

Query  721  PSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVTVNGQ  780
            PS+LPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQV VNGQ
Sbjct  721  PSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQ  780

Query  781  DGSAALVDTDSQVYLTGLADKGELTVKWGAQQCRVNYQLPAHKGIAGLYQMSGLCR  836
            DGSA LVDTDSQVYLTGLADKGELTVKWGAQQCRVNY+LPAHKGIAGLYQMSGLCR
Sbjct  781  DGSADLVDTDSQVYLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLCR  836

31) safC in NC_017046


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score = 1206 bits (4576),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 793/807 (99%), Positives = 799/807 (99%), Gaps = 0/807 (0%)

Query  1    MLGDAAKGVDMSLFNQGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQGTPVLAPCLTV  60
            MLGDAAKGVDMSLFNQGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQGTP LA+CLTV
Sbjct  30   MLGDAAKGVDMSLFNQGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQGTPFLASCLTV  89

Query  61   SQLSRYGVKTEDYPQLWKAAKPPDECADLTAIPQAKAVLDINNQQLQLSIPQLALRPEFK  120
            SQLSRYGVKTEDYPQLWKAAK PDECADLTAIPQAKAVLDINNQQLQLSIPQLALRPEFK
Sbjct  90   SQLSRYGVKTEDYPQLWKAAKTPDECADLTAIPQAKAVLDINNQQLQLSIPQLALRPEFK  149

Query  121  GIAPEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRDNSSWVQLQPGINIGAWRVRNATSW  180
            GIAPEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRDNSSWVQLQPGINIGAWRVRNATSW
Sbjct  150  GIAPEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRDNSSWVQLQPGINIGAWRVRNATSW  209

Query  181  QRSSQLSGKWQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTGVMLASDDNMVPYS  240
            QRSSQLSGKWQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTGVMLASDDNMVPYS
Sbjct  210  QRSSQLSGKWQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTGVMLASDDNMVPYS  269

Query  241  ERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSGDLHVTVWEADG  300
            ERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSGDLHVTVWEADG
Sbjct  270  ERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSGDLHVTVWEADG  329

Query  301  STQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATLMYGLPWNLTAYGG  360
            STQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATLMYGLPWNLTAYGG
Sbjct  330  STQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATLMYGLPWNLTAYGG  389

Query  361  IQSATHYQAAllglggslgrwgslsVDGSDTHSQRQGEAVQQGASWRLRYSNQLTATGTN  420
            IQSATHYQAA LGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLRYSNQLTATGTN
Sbjct  390  IQSATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLRYSNQLTATGTN  449

Query  421  FFLTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQPSSRTTLMLSQSWGRHLGNLSL  480
            +FLTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQPSSRTTLMLSQSWGRHLGNLSL
Sbjct  450  LFLTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQPSSRTTLMLSQSWGRHLGNLSL  509

Query  481  TGSRTDWRNRPGHDDSYGLSWGTSIGGGSLSLNWNQNRTLWRNGAHRKENITSLWFSMPL  540
             GSRTDWRNRPGHDDSYGLSWGTSIGGGSLSLNWNQNRTLWRNG+HRKENITSLWFSMPL
Sbjct  510  IGSRTDWRNRPGHDDSYGLSWGTSIGGGSLSLNWNQNRTLWRNGGHRKENITSLWFSMPL  569

Query  541  SRWTGNNVSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQSYRADAPPGGGNNSALH  600
            SRWTGNNVSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQSYRADAPPGGGNNSALH
Sbjct  570  SRWTGNNVSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQSYRADAPPGGGNNSALH  629

Query  601  LAWNgdygllggdysysRAMRQMGVNIAGGIVIHHHGVTLGQPLQGSVALVEAPGASGVP  660
            LAWNG YGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQPLQGSVALVEAPGASGVP
Sbjct  630  LAWNGAYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQPLQGSVALVEAPGASGVP  689

Query  661  VGGWPGVKTDFRGDTTVGNLNVYQENTVSLDPSRLPDDAEVTQTDVRVVPTEGAVVEAKF  720
            VG WPGVKTDFRGDTTVGNL+VYQENTVSLDPS+LPDDAEVTQTDVRVVPTEGAVVEAKF
Sbjct  690  VGPWPGVKTDFRGDTTVGNLSVYQENTVSLDPSQLPDDAEVTQTDVRVVPTEGAVVEAKF  749

Query  721  HTRIGARALMTLKREDGSAIPFGAQVTVNGQDGSAALVDTDSQVYLTGLADKGELTVKWG  780
            HTRIGARALMTLKREDGSAIPFGAQV VNGQDGSA LVDTDSQVYLTGLADKGELTVKWG
Sbjct  750  HTRIGARALMTLKREDGSAIPFGAQVIVNGQDGSADLVDTDSQVYLTGLADKGELTVKWG  809

Query  781  AQQCRVNYRLPAHKGIAGLYQMSGLCR  807
            AQQCRVNY+LPAHKGIAGLYQMSGLCR
Sbjct  810  AQQCRVNYHLPAHKGIAGLYQMSGLCR  836

32) PSPPH_A0064 in NC_007274


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  670 bits (2533),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 414/822 (51%), Positives = 619/822 (76%), Gaps = 23/822 (2%)

Query  18   SVQAQTYHFDPALLGSSAKHTDLSLFNRGLQQPGRYHLDVMLNDEQVDSQDITLSLKKNA  77
              +A+TY FD+++LG +AK  D+SLFN+G+QQPG Y++DVM+N+ +VD++D+ + L K++
Sbjct  18   CANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDG  77

Query  78   AGISVLDPCLSLEQLSRWGIKTEAIPGLNRTSNA-GACVILESIPESTVNADIANQQLQL  136
             G + L +CL++ QLSR G+KTE  P L +++++ + C  L +IP++    DI NQQLQL
Sbjct  78   QGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTAIPQAKAVLDINNQQLQL  137

Query  137  QVPQSFMRPNYRGLAPQGLWDDGITAFLMNYSAGASRVDSR-DIGANDTSSWAQLQPGFN  195
             +PQ  +RP+++G+AP++LWDDGI AFLMNYSA +++ D + D+ + D SSW QLQPG+N
Sbjct  138  SIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRDNSSWVQLQPGIN  197

Query  196  LGPWRARSSFSWKDGGDL----QRSYAYVERGVRGFKSRLSLGERTSPGDVFDGVPFTGV  251
            +G+WR R++ SW+ +++L    Q +Y+Y ERG+ ++KSRL+LG++TS G++FD+VPFTGV
Sbjct  198  IGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTGV  257

Query  252  MLATDDTMFPASERSFAPTVSGVALTRARIEVRQNGYIIKTLSVPPGPFEIQDLAASSGN  311
            MLA+DD M P SER FAP V G+A T+AR+EV+QNGY I   +V+PGPF ++DL+ + ++
Sbjct  258  MLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSS  317

Query  312  GDLHVAVYEADGRNQFFIVPWNTPAIALHKDHLKYSVTAGRYRSAESRTPEALLIQATAI  371
            GDLHV+V EADG  Q F+VP +TPAIALH++ LKYS+ AGRYRS++S T  A + QAT +
Sbjct  318  GDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATLM  377

Query  372  YGLPWNLTGYGGLQGATHYGAASLGVGAMLGGWGAVSVDATGSRSQTPGGNTQGGLKWRL  431
            YGLPWNLT+YGG+Q+ATHY AASLG+G+ LG WG++SVD+++++SQ  G   Q G  WRL
Sbjct  378  YGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWRL  437

Query  432  RYSTQLPLTHTAVSLASMQYASAGYRSLTETLGSRQREEFAIDKDYSGRRQR----ARST  487
            RYS QL  T T + L+  QYAS GY +L++ L+S +++    ++   ++R+     +R+T
Sbjct  438  RYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHN----GNRLWSWRENLQPSSRTT  493

Query  488  LSLSQKLG-PLGSLGISASRTDWRYGQGHDDGMGFSWSKSIHSLSVSIEWQQNRSF--DG  544
            L LSQ  G  LG+L++ +SRTDWR   GHDD+ G+SW+ SI + S+S++W+QNR++  +G
Sbjct  494  LMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLSLNWNQNRTLWRNG  553

Query  545  CQ--DRTLSVWVSIPI----GGSTNASWTLTAPTRGQQEQEGGLNGRAFEDRLAWDVRQR  598
             +  +   S+W S+P+    G + +ASW +T+P++G Q Q+ G+NG AF ++L W+VRQ 
Sbjct  554  GHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQS  613

Query  599  YRTDVSSDQRSGSDLHASWNGASGQVGVGYGYSATSRQANMDVSGGVIVHHDGVTLSQQL  658
            YR+D +++  + S LH +WNGA G +G +Y+YS + RQ  ++++GG+++HH+GVTL+Q L
Sbjct  614  YRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQPL  673

Query  659  SDTVALVSAPGAAGVQVEGWPGVETDRRGYTVTSNLVGYQENTVSLNPITVPDNAEIPQT  718
             ++VALV APGA+GV V  WPGV TD RG T  +NL  YQENTVSL+P  +PD+AE+ QT
Sbjct  674  QGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLDPSQLPDDAEVTQT  733

Query  719  DVKIVPTAGAVVEAAFRTRTGAKALVTLHYSDGSPVAFGSQVTAEGREGNAGITDAKgla  778
            DV++VPT GAVVEA F+TR GA+AL+TL   DGS+++FG+QV  +G++G+A++ D+ +  
Sbjct  734  DVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQDGSADLVDTDSQV  793

Query  779  yltglsssgtlsvrsgNKMCHANYDLPGNKETAGLYQLDAVC  820
            YLTGL+  G L+V+ G + C+ NY+LP++K  AGLYQ+ ++C
Sbjct  794  YLTGLADKGELTVKWGAQQCRVNYHLPAHKGIAGLYQMSGLC  835

33) aafC in NC_017627


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  659 bits (2490),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 421/847 (50%), Positives = 625/847 (74%), Gaps = 32/847 (3%)

Query  5    LLHVEDVI----ARTYSFNSSLLSGGGKGVDLTLFEEGGQLPGIYQTDIILNGSRVDSLE  60
            LL + +V+    A+TY+F++S+L++++KGVD++LF++G Q PG Y+ D+++NG RVD+ +
Sbjct  9    LLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVNGKRVDTRD  68

Query  61   MPFHTEKDENGRPYLKTCLTQEMLARYGVKTEEYPALFRSLGGGSDTSGERGVCADLSAI  120
            + F  EKD +G P+L +CLT   L+RYGVKTE+YP L ++    + T++E   CADL+AI
Sbjct  69   VVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKA----AKTPDE---CADLTAI  121

Query  121  PQATENYQFAAQQLVLGIPQVALRPLLRGIAPEVLWDDGIPAFLLNWQANAGRSEYRGYI  180
            PQA    ++  QQL L+IPQ+ALRP ++GIAPE LWDDGIPAFL+N  A + +++Y+  +
Sbjct  122  PQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMDM  181

Query  181  KDVEDYFWSSLEPGINIGSWRIRNLTTWNKSSGQSGKWESLYIRAERGLNSLKSRLTLGE  240
             + ++  W  L+PGINIG+WR+RN T+W++SS  SGKW++ Y  AERGL SLKSRLTLG+
Sbjct  182  VGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLGQ  241

Query  241  NYTPSDIFDSVPFRGGMLSSDESMVPYNQREFAPVVRGIARTQARIEVRQNGYLIQSQTV  300
            + + ++IFDSVPF G ML+SD++MVPY++R+FAPVVRGIARTQAR+EV+QNGY I + TV
Sbjct  242  KTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTV  301

Query  301  APGAFALTDLPVTGSGSDLQVTVRESDGtvqvftvpfttpAIALREGYLKYNVMAGQYRS  360
            APG+FAL DL+VT+S++DL+VTV+E+DG+ Q+F VP+ TPAIAL++GYLKY+++AG+YRS
Sbjct  302  APGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRS  361

Query  361  SDDAVEDSTLGQVMGMYGLPWGLTVFGGLQGAEHYQSAALGLGWSLGKLGAVSLDTIHSR  420
            SD A + + ++Q   MYGLPW LT +GG+Q+A HYQ+A+LGLG SLG+ G++S+D  +++
Sbjct  362  SDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDTH  421

Query  421  GQQKGYNYETGNTWRIRYNKSFELTGTSFTAASYQYSSSGYHTLSDVLETYRDDGR--FA  478
            +Q++G   + G +WR+RY++ +  TGT++  +  QY+S GY+TLSDVL++YR++G    +
Sbjct  422  SQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLWS  481

Query  479  YrstdsrtsrttVNLSQSLGR-WGYLGLNGSRDEYRDRPHQDYIGASYGASWNRM----S  533
             R     +SRTT+ LSQS GR  G L+L GSR + R+RP +D    SYG SW       S
Sbjct  482  WRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHD---DSYGLSWGTSIGGGS  538

Query  534  LSVNWSRNHSTRGYYGSKSRTEDSISIWMSIPLESWLGRSDNNISATAQMQRSTEQNTRY  593
            LS+NW++N++ +    +  R E+  S+W S+PL  W G   NN+SA+ QM  +++     
Sbjct  539  LSLNWNQNRTLWR--NGGHRKENITSLWFSMPLSRWTG---NNVSASWQMTSPSHGGQTQ  593

Query  594  ELGLNGRAFDRRLFWEVHEQ-MVSGSEYNTGTSRLNLRWSGTYGELAGMYSYSSNMRQIN  652
            ++G+NG AF ++L WEV++     ++      S L+L W+G+YG L+G YSYS  MRQ+ 
Sbjct  594  QVGVNGEAFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMG  653

Query  653  AGMSGSMVAHGEGVTFGQRAGDTVTLIAAPGVSGASVGDWPGVRTDFRGYALAGYASPYQ  712
              ++G++V H +GVT+GQ   ++V+L+ APG SG +VG WPGV+TDFRG +  G  S YQ
Sbjct  654  VNIAGGIVIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQ  713

Query  713  ENVITLDPTTFPEDAEVPQTDSRVVPTKGAVVRAGFRTRVGGRALVSLTRQDGSSLPFGA  772
            EN ++LDP+ +P+DAEV QTD RVVPT GAVV A F+TR+G+RAL++L R+DGS++PFGA
Sbjct  714  ENTVSLDPSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGA  773

Query  773  IVTLEGKPGETSGSAGVVDDKGRVYLSGLSETGKLKAQWGENSLCHADYRLPEEKGPAGI  832
             V ++G+     GSA++VD  ++VYL+GL++ G L  +WG +  C+ +Y+LP +KG AG+
Sbjct  774  QVIVNGQ----DGSADLVDTDSQVYLTGLADKGELTVKWGAQQ-CRVNYHLPAHKGIAGL  828

Query  833  FLTRTVC  839
            +    +C
Sbjct  829  YQMSGLC  835

34) YPK_2757 in NC_010465


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  629 bits (2378),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 381/828 (47%), Positives = 594/828 (72%), Gaps = 25/828 (3%)

Query  9    AQRYSFDPNLLVDGNNNTDTSLFEQGNELPGTYLVDIILNGNKVDSTNVTFHSEKSPSGE  68
            A+ Y+FD+++L D+ +  D SLF+QG + PGTY VD+++NG++VD+ +V F  EK   G 
Sbjct  21   AHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQGT  80

Query  69   PFLQSCLTKEQLSRYGVDVDAYPELSPALKNSQTNPCVNLAAIPQASEEFQFYNMQLVLS  128
            PFL SCLT  QLSRYGV  + YP+L  A K +  + C +L+AIPQA   +++ N QL LS
Sbjct  81   PFLASCLTVSQLSRYGVKTEDYPQLWKAAKTP--DECADLTAIPQAKAVLDINNQQLQLS  138

Query  129  IPQAALRPE--GEVPIERWDDGITAFLLNYMANISETQFRQN-GGYRRSQYIQLYPGLNL  185
            IPQ ALRPE  G  P + WDDGI AFL+NY A  ++T+++ +  G   S  +QL PG+N+
Sbjct  139  IPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRDNSSWVQLQPGINI  198

Query  186  GAWRVRNATNWSQSGDRGGKWQSAYTYATRGIYRLKSRVTLGESYTPGDFFDSIPFRGVM  245
            GAWRVRNAT+W +S++ +GKWQ+AYTYA RG+Y LKSR+TLG+  + G++FDS+PF GVM
Sbjct  199  GAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTGVM  258

Query  246  LGDDPNMQPSNQRDFIPVVRGIARSQAQVEIRQNGYLIYSTVVPPGPFELSDVIPSKSGS  305
            L+ D NM P ++R+F PVVRGIAR+QA+VE++QNGY IY+T V+PGPF L D+  + S++
Sbjct  259  LASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSG  318

Query  306  DLHVRVLESNGASQAFIVPYEVPAIALRKGHLRYNLVAGQYRPANADVETPPVAQATVAY  365
            DLHV V E++G++Q F+VPY+ PAIAL++G L+Y+L+AG+YR++++  + + +AQAT+ Y
Sbjct  319  DLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATLMY  378

Query  366  GLPWNLTAFIGEQWSRHYQATSAGLGVLLGEYGALSSSITQATSQYHHQQPVKGQAWEVR  425
            GLPWNLTA+ G Q + HYQA+S GLG  LG  G+LS   +++ SQ + +   +G +W +R
Sbjct  379  GLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLR  438

Query  426  YNKTLQASDTSFSLVNSQYSTNGFSTLSDVLQSYRQSGSG--DNRDKIDENSRSRDLRNQ  483
            Y++ L A++T++ L   QY+++G++TLSDVL+SYR++G+     R++++ +SR+  + +Q
Sbjct  439  YSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQPSSRTTLMLSQ  498

Query  484  ISAVIGQSLGKFGYLNLNWSRQVYRGPIPAKNSLGIHYNLNVGNSFWALSWVQN-----A  538
                 G+ LG+++ +    SR   R      +S G+    ++G +  +L+W QN      
Sbjct  499  SW---GRHLGNLSLIG---SRTDWRNRPGHDDSYGLSWGTSIGGGSLSLNWNQNRTLWRN  552

Query  539  NENKNDRILSLSVSIPLG--GHHDTYASYRMTS-SNGSNDHEIEMYGQAFDSRLSWSVRQ  595
              ++++ I SL  S+PL+    ++  AS +MTS S+G++ +++ + G+AF  +L W VRQ
Sbjct  553  GGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQ  612

Query  596  AEHYGQPNSGHNSGSLRLGWQGSYGNIAGNYYYTPSIRQLSADVSGGAIIHRHGLTLGPQ  655
            + + + P +G N+++L+L+W+G+YG ++G+Y Y+ ++RQ++ +++GG +IH+HG+TLG  
Sbjct  613  SYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQP  672

Query  656  INGTSvlvevpgvggvtttEDRRLKTDFRGYSIVSGLSPYQEHDIVLETADLPPDAEVAK  715
            ++G+  LVE PG +GV       +KTDFRG + V+ LS YQE+ + L+ ++LP DAEV++
Sbjct  673  LQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLDPSQLPDDAEVTQ  732

Query  716  TDTKVLPTEGAIVRASFSPQIGAKALMTITRANGQTIPFGAMASLVNQSANAAIVDEGGK  775
            TD +V+PTEGA+V A F  +IGA+ALMT+ R +G +IPFGA   +  Q ++A +VD +++
Sbjct  733  TDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQDGSADLVDTDSQ  792

Query  776  AYLTGLPETGQLLVQWGKDAGQQCRVDYQLSPAEKGDAGLYMLSGVCH  823
             YLTGL++ G+L V+WG   +QQCRV+Y+L PA+KG AGLY +SG+C+
Sbjct  793  VYLTGLADKGELTVKWG---AQQCRVNYHL-PAHKGIAGLYQMSGLCR  836

35) YE105_C2661 in NC_015224


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  616 bits (2328),  Expect = 2e-177, Method: Compositional matrix adjust.
 Identities = 379/813 (47%), Positives = 580/813 (72%), Gaps = 32/813 (3%)

Query  24   TDLSLFEQGGQLPGTYQVDIFLGDEKMDSTNVTFHAVKSPTGEYSLQSCLTKEQLSRYGV  83
             D+SLF+QG Q PGTY+VD+ + + ++D+ +V F   K   G   L SCLT  QLSRYGV
Sbjct  38   VDMSLFNQGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGV  97

Query  84   DVDNYPELLPPEKNIQQDKQASQCVNLAAIPQASEEFEFYAMRLVLNIPQVALRP--KDE  141
              ++YP+L  + K       + +C +L+AIPQA   +++   +L L+IPQ+ALRP  K+ 
Sbjct  98   KTEDYPQLWKAAKT------PDECADLTAIPQAKAVLDINNQQLQLSIPQLALRPEFKGI  151

Query  142  IPVERWDDGITAFLLNYMANSSTTTYR-QTGEQQSSHYVQLYPGFNIGAWRIRNATSWNQ  200
             P + WDDGI AFL+NY A ++ T Y+ +   +++S  VQL PG+NIGAWR+RNATSW++
Sbjct  152  APEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRDNSSWVQLQPGINIGAWRVRNATSWQR  211

Query  201  SGNSAGKWQSSYIYATRGLYRLKSRVTLGQSYTPGDFFDSVPFSGVMLGDDDNMLPSSQR  260
            S++ +GKWQ++Y YA RGLY LKSR+TLGQ  + G++FDSVPF+GVML+ DDNM+P S+R
Sbjct  212  SSQLSGKWQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTGVMLASDDNMVPYSER  271

Query  261  DFIPVVRGIARSQARVEVRQNGYLLYSTVVSPGPFELTDILPSHSNGDLHVTVLESNGTT  320
            +F PVVRGIAR+QARVEV+QNGY +Y+T V+PGPF L D+  ++S+GDLHVTV E++G+T
Sbjct  272  QFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSGDLHVTVWEADGST  331

Query  321  QQFTVPYSVPAIALRKGRLRYNLMAGRYRPANVDVETTPIAQATVAYGLPWNLTAFVGGQ  380
            Q F VPY  PAIAL++G L+Y+L+AGRYR+++   + + IAQAT+ YGLPWNLTA+ G Q
Sbjct  332  QMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATLMYGLPWNLTAYGGIQ  391

Query  381  WSPHYQATTAGMGVMLGDYGALSSSITQATSEYRQQQPVKGQVWEVRYNKTLQASDTSFS  440
             + HYQA++ G+G  LG  G+LS   +++ S+ + +   +G  W +RY++ L A++T++ 
Sbjct  392  SATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLRYSNQLTATGTNLF  451

Query  441  VVNSQYSTADFSNLSDVLQSYRRHDYSRRDWHSN-SLRNQTHVVVGQPLG-QFGYLNLNW  498
            +   QY++ +++ LSDVL+SYR+++   + W+ N    ++T ++++Q+ G ++G L+L  
Sbjct  452  LTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQPSSRTTLMLSQSWGRHLGNLSLIG  511

Query  499  SRQNYRDAPASS-----SWGVQYSFNIGNLYCSLDWTQNQ--YRGNQDR---LLSLSVSM  548
            SR + R+ P+       SWG   S+  G+L  SL+W QN+   R   +R   + SL  SM
Sbjct  512  SRTDWRNRPGHDDSYGLSWGT--SIGGGSL--SLNWNQNRTLWRNGGHRKENITSLWFSM  567

Query  549  PLGR--ERDTYAAYRMTSSDN-SKDHEMSLYGHAFDNRLSWNVRQTERYAQFHSGENSGS  605
            PL+R    +  A+ +MTS+ + ++ +++++ G+AF ++L W+VRQ+ R     +G N+++
Sbjct  568  PLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQSYRADAPPGGGNNSA  627

Query  606  LGLDWQGSYGDIGGNYYYTPTIRQFSANVSGGAVIHRHGLTLGPQINGTAALVEVPGVSG  665
            L L W+G+YG +GG+Y Y+ ++RQ + N++GG VIH+HG+TLG  ++G+ ALVE PG SG
Sbjct  628  LHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQPLQGSVALVEAPGASG  687

Query  666  VSTSEDHRLKTDFRGYSIVPNIFPYEEHDILLETTDLPPDAEVTKTDAKVLPTEGAIVRA  725
            V+ +    +KTDFRG + V N+  Y+E+ + L+ ++LP DAEVT+TD +V+PTEGA+V A
Sbjct  688  VPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLDPSQLPDDAEVTQTDVRVVPTEGAVVEA  747

Query  726  SFSPQIGARALMTITRNNGETIPFGAMASLVNQPANAAIVDEGGKAYLTGLPETGQLLVQ  785
             F  +IGARALMT+ R++G +IPFGA   +  Q ++A +VD +++ YLTGL++ G+L V+
Sbjct  748  KFHTRIGARALMTLKREDGSAIPFGAQVIVNGQDGSADLVDTDSQVYLTGLADKGELTVK  807

Query  786  WGRGASQQCRVDYQLANAKKGDAGLYMLSGVCH  818
            WG   +QQCRV+Y+L+ A KG AGLY +SG+C+
Sbjct  808  WG---AQQCRVNYHLP-AHKGIAGLYQMSGLCR  836

36) Y11_03331 in NC_017564


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  616 bits (2326),  Expect = 2e-177, Method: Compositional matrix adjust.
 Identities = 377/813 (47%), Positives = 582/813 (72%), Gaps = 32/813 (3%)

Query  47   TDLSLFEQGGQLPGTYQVDIFLGDEKMDSTNVTFHAVKSPTGEYSLQSCLTKEQLSRYGV  106
             D+SLF+QG Q PGTY+VD+ + + ++D+ +V F   K   G   L SCLT  QLSRYGV
Sbjct  38   VDMSLFNQGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGV  97

Query  107  DVDNYPELLPPEKNIQQDKQASQCVNLAAIPQASEEFEFYAMRLVLNIPQVALRP--KDE  164
              ++YP+L  + K       + +C +L+AIPQA   +++   +L L+IPQ+ALRP  K+ 
Sbjct  98   KTEDYPQLWKAAKT------PDECADLTAIPQAKAVLDINNQQLQLSIPQLALRPEFKGI  151

Query  165  IPVERWDDGITAFLLNYMANSSTTTYR-QTGEQQSSHYVQLYPGFNIGAWRIRNATSWNQ  223
             P + WDDGI AFL+NY A ++ T Y+ +   +++S  VQL PG+NIGAWR+RNATSW++
Sbjct  152  APEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRDNSSWVQLQPGINIGAWRVRNATSWQR  211

Query  224  SGNSAGKWQSSYIYATRGLYRLKSRVTLGQSYTPGDFFDSVPFSGVMLGDDDNMLPSSQR  283
            S++ +GKWQ++Y YA RGLY LKSR+TLGQ  + G++FDSVPF+GVML+ DDNM+P S+R
Sbjct  212  SSQLSGKWQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTGVMLASDDNMVPYSER  271

Query  284  DFIPVVRGIARSQARVEVRQNGYLLYSTVVSPGPFELTDILPSHSNGDLHVTVLESNGTT  343
            +F PVVRGIAR+QARVEV+QNGY +Y+T V+PGPF L D+  ++S+GDLHVTV E++G+T
Sbjct  272  QFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSGDLHVTVWEADGST  331

Query  344  QQFTVPYSVPAIALRKGRLRYNLMAGRYRPANVDVETTPIAQATVAYGLPWNLTAFVGGQ  403
            Q F VPY  PAIAL++G L+Y+L+AGRYR+++   + + IAQAT+ YGLPWNLTA+ G Q
Sbjct  332  QMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATLMYGLPWNLTAYGGIQ  391

Query  404  WSPHYQATTAGMGVMLGDYGALSSSITQATSEYRQQQPVKGQVWEVRYNKTLQASDTSFS  463
             + HYQA++ G+G  LG  G+LS   +++ S+ + +   +G  W +RY++ L A++T++ 
Sbjct  392  SATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLRYSNQLTATGTNLF  451

Query  464  VVNSQYSTADFSNLSDVLQSYRRHDYSRRDWHSN-SLRNQTHVVVGQPLG-QFGYLNL--  519
            +   QY++ +++ LSDVL+SYR+++   + W+ N    ++T ++++Q+ G ++G L+L  
Sbjct  452  LTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQPSSRTTLMLSQSWGRHLGNLSLIG  511

Query  520  ---NWSRQSYRDAPASSSWGAQYSFNIGNLYCSLDWTQNQ--YRGNQDR---LLSLSVSM  571
               +W  ++ +D + + SWG+  S+  G+L  SL+W QN+   R   +R   + SL  SM
Sbjct  512  SRTDWRNRPGHDDSYGLSWGT--SIGGGSL--SLNWNQNRTLWRNGGHRKENITSLWFSM  567

Query  572  PLGR--ERDTYAAYRMTSSDN-SKDHEMSLYGHAFDNRLSWNVRQTERYAQFHSGENSGS  628
            PL+R    +  A+ +MTS+ + ++ +++++ G+AF ++L W+VRQ+ R     +G N+++
Sbjct  568  PLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQSYRADAPPGGGNNSA  627

Query  629  LGLDWQGSYGDIGGNYYYTPTIRQFSANVSGGAVIHRHGLTLGPQINGTAALVEVPGVSG  688
            L L W+G+YG +GG+Y Y+ ++RQ + N++GG VIH+HG+TLG  ++G+ ALVE PG SG
Sbjct  628  LHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQPLQGSVALVEAPGASG  687

Query  689  VSTSEDHRLKTDFRGYSIVPNIFPYEEHDILLETTDLPPDAEVTKTDAKVLPTEGAIVRA  748
            V+ +    +KTDFRG + V N+  Y+E+ + L+ ++LP DAEVT+TD +V+PTEGA+V A
Sbjct  688  VPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLDPSQLPDDAEVTQTDVRVVPTEGAVVEA  747

Query  749  SFSPQIGARALMTITRNNGETIPFGAMASLVNQPANAAIVDEGGKAYLTGLPETGQLLVQ  808
             F  +IGARALMT+ R++G +IPFGA   +  Q ++A +VD +++ YLTGL++ G+L V+
Sbjct  748  KFHTRIGARALMTLKREDGSAIPFGAQVIVNGQDGSADLVDTDSQVYLTGLADKGELTVK  807

Query  809  WGRGASQQCRVDYQLANAKKGDAGLYMLSGVCH  841
            WG   +QQCRV+Y+L+ A KG AGLY +SG+C+
Sbjct  808  WG---AQQCRVNYHLP-AHKGIAGLYQMSGLCR  836

37) psaC in NC_017265


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  613 bits (2315),  Expect = 2e-176, Method: Compositional matrix adjust.
 Identities = 386/848 (46%), Positives = 606/848 (72%), Gaps = 28/848 (3%)

Query  6    VQFTTITLLMSTSFLV---GAQRYSFDPNLLVDGNNNTDTSLFEQGNELPGTYLVDIILN  62
            ++F   +LL+  + +V    A+ Y+FD+++L D+ +  D SLF+QG + PGTY VD+++N
Sbjct  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60

Query  63   GNKVDSTNVTFHSEKSPSGEPFLQSCLTKEQLSRYGVDVDAYPELSPALKNSQTNPCVNL  122
            G++VD+ +V F  EK   G PFL SCLT  QLSRYGV  + YP+L  A K +  + C +L
Sbjct  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTP--DECADL  118

Query  123  AAIPQASEEFQFYNMQLVLSIPQAALRPE--GEVPIERWDDGITAFLLNYMANISETQFR  180
            +AIPQA   +++ N QL LSIPQ ALRPE  G  P + WDDGI AFL+NY A  ++T+++
Sbjct  119  TAIPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYK  178

Query  181  QN-GGYRRSQYIQLYPGLNLGAWRVRNATNWSQSGDRGGKWQSAYTYATRGIYRLKSRVT  239
             +  G   S  +QL PG+N+GAWRVRNAT+W +S++ +GKWQ+AYTYA RG+Y LKSR+T
Sbjct  179  MDMVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLT  238

Query  240  LGESYTPGDFFDSIPFRGVMLGDDPNMQPSNQRDFIPVVRGIARSQAQVEIRQNGYLIYS  299
            LG+  + G++FDS+PF GVML+ D NM P ++R+F PVVRGIAR+QA+VE++QNGY IY+
Sbjct  239  LGQKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYN  298

Query  300  TVVPPGPFELSDVIPSKSGSDLHVRVLESNGASQAFIVPYEVPAIALRKGHLRYNLVAGQ  359
            T V+PGPF L D+  + S++DLHV V E++G++Q F+VPY+ PAIAL++G L+Y+L+AG+
Sbjct  299  TTVAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGR  358

Query  360  YRPANADVETPPVAQATVAYGLPWNLTAFIGEQWSRHYQATsaglggllgeygalsssIT  419
            YR++++  + + +AQAT+ YGLPWNLTA+ G Q + HYQA+S GLGG LG  G+LS   +
Sbjct  359  YRSSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGS  418

Query  420  QATSQYHHQQPVKGQAWEVRYNKTLQASDTSFSLVNSQYSTNGFSTLSDVLQSYRQSGSG  479
            ++ SQ + +   +G +W +RY++ L A++T++ L   QY+++G++TLSDVL+SYR++G+ 
Sbjct  419  DTHSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNR  478

Query  480  --DNRDKIDENSRSRDLRNQISAVIGQSLGKFGYLNLNWSRQVYRGPIPAKNSLGIHYNL  537
                R++++ +SR+  +   +S   G+ LG+++ +    SR   R      +S G+    
Sbjct  479  LWSWRENLQPSSRTTLM---LSQSWGRHLGNLSLIG---SRTDWRNRPGHDDSYGLSWGT  532

Query  538  NVGNSFWALSWVQN-----ANENKNDRILSLSVSIPLG--GHHDTYASYRMTS-SNGSND  589
            ++G +  +L+W QN        ++++ I SL  S+PL+    ++  AS +MTS S+G++ 
Sbjct  533  SIGGGSLSLNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQT  592

Query  590  HEIGMYGQAFDSRLSWSVRQAEHYGQPNSGHNSGSLRLGWQGSYGNIAGNYYYTPSIRQL  649
            +++G+ G+AF  +L W VRQ+ + + P +G N+++L+L+W+G+YG ++G+Y Y+ ++RQ+
Sbjct  593  QQVGVNGEAFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQM  652

Query  650  SADVSGGAIIHRHGLTLGPQINGTSvlvevpgvggvtttEDRRLKTDFRGYSIVSGLSPY  709
            + +++GG +IH+HG+TLG  ++G+  LVE PG +GV       +KTDFRG + V+ LS Y
Sbjct  653  GVNIAGGIVIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVY  712

Query  710  QEHDIVLETADLPPDAEVAKTDTKVLPTEGAIVRASFSPQIGAKALMTITRANGQTIPFG  769
            QE+ + L+ ++LP DAEV++TD +V+PTEGA+V A F  +IGA+ALMT+ R +G +IPFG
Sbjct  713  QENTVSLDPSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFG  772

Query  770  AMASLVNQSANAAIVDEGGKAYLTGLPETGQLLVQWGKDAGQQCRVDYQLSPAEKGDTGL  829
            A   +  Q ++A +VD +++ YLTGL++ G+L V+WG   +QQCRV+Y+L PA+KG +GL
Sbjct  773  AQVIVNGQDGSADLVDTDSQVYLTGLADKGELTVKWG---AQQCRVNYHL-PAHKGIAGL  828

Query  830  YMLSGVCH  837
            Y +SG+C+
Sbjct  829  YQMSGLCR  836

38) psaC in NC_005810


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  613 bits (2315),  Expect = 2e-176, Method: Compositional matrix adjust.
 Identities = 386/848 (46%), Positives = 606/848 (72%), Gaps = 28/848 (3%)

Query  6    VQFTTITLLMSTSFLV---GAQRYSFDPNLLVDGNNNTDTSLFEQGNELPGTYLVDIILN  62
            ++F   +LL+  + +V    A+ Y+FD+++L D+ +  D SLF+QG + PGTY VD+++N
Sbjct  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60

Query  63   GNKVDSTNVTFHSEKSPSGEPFLQSCLTKEQLSRYGVDVDAYPELSPALKNSQTNPCVNL  122
            G++VD+ +V F  EK   G PFL SCLT  QLSRYGV  + YP+L  A K +  + C +L
Sbjct  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTP--DECADL  118

Query  123  AAIPQASEEFQFYNMQLVLSIPQAALRPE--GEVPIERWDDGITAFLLNYMANISETQFR  180
            +AIPQA   +++ N QL LSIPQ ALRPE  G  P + WDDGI AFL+NY A  ++T+++
Sbjct  119  TAIPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYK  178

Query  181  QN-GGYRRSQYIQLYPGLNLGAWRVRNATNWSQSGDRGGKWQSAYTYATRGIYRLKSRVT  239
             +  G   S  +QL PG+N+GAWRVRNAT+W +S++ +GKWQ+AYTYA RG+Y LKSR+T
Sbjct  179  MDMVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLT  238

Query  240  LGESYTPGDFFDSIPFRGVMLGDDPNMQPSNQRDFIPVVRGIARSQAQVEIRQNGYLIYS  299
            LG+  + G++FDS+PF GVML+ D NM P ++R+F PVVRGIAR+QA+VE++QNGY IY+
Sbjct  239  LGQKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYN  298

Query  300  TVVPPGPFELSDVIPSKSGSDLHVRVLESNGASQAFIVPYEVPAIALRKGHLRYNLVAGQ  359
            T V+PGPF L D+  + S++DLHV V E++G++Q F+VPY+ PAIAL++G L+Y+L+AG+
Sbjct  299  TTVAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGR  358

Query  360  YRPANADVETPPVAQATVAYGLPWNLTAFIGEQWSRHYQATsaglggllgeygalsssIT  419
            YR++++  + + +AQAT+ YGLPWNLTA+ G Q + HYQA+S GLGG LG  G+LS   +
Sbjct  359  YRSSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGS  418

Query  420  QATSQYHHQQPVKGQAWEVRYNKTLQASDTSFSLVNSQYSTNGFSTLSDVLQSYRQSGSG  479
            ++ SQ + +   +G +W +RY++ L A++T++ L   QY+++G++TLSDVL+SYR++G+ 
Sbjct  419  DTHSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNR  478

Query  480  --DNRDKIDENSRSRDLRNQISAVIGQSLGKFGYLNLNWSRQVYRGPIPAKNSLGIHYNL  537
                R++++ +SR+  +   +S   G+ LG+++ +    SR   R      +S G+    
Sbjct  479  LWSWRENLQPSSRTTLM---LSQSWGRHLGNLSLIG---SRTDWRNRPGHDDSYGLSWGT  532

Query  538  NVGNSFWALSWVQN-----ANENKNDRILSLSVSIPLG--GHHDTYASYRMTS-SNGSND  589
            ++G +  +L+W QN        ++++ I SL  S+PL+    ++  AS +MTS S+G++ 
Sbjct  533  SIGGGSLSLNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQT  592

Query  590  HEIGMYGQAFDSRLSWSVRQAEHYGQPNSGHNSGSLRLGWQGSYGNIAGNYYYTPSIRQL  649
            +++G+ G+AF  +L W VRQ+ + + P +G N+++L+L+W+G+YG ++G+Y Y+ ++RQ+
Sbjct  593  QQVGVNGEAFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQM  652

Query  650  SADVSGGAIIHRHGLTLGPQINGTSvlvevpgvggvtttEDRRLKTDFRGYSIVSGLSPY  709
            + +++GG +IH+HG+TLG  ++G+  LVE PG +GV       +KTDFRG + V+ LS Y
Sbjct  653  GVNIAGGIVIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVY  712

Query  710  QEHDIVLETADLPPDAEVAKTDTKVLPTEGAIVRASFSPQIGAKALMTITRANGQTIPFG  769
            QE+ + L+ ++LP DAEV++TD +V+PTEGA+V A F  +IGA+ALMT+ R +G +IPFG
Sbjct  713  QENTVSLDPSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFG  772

Query  770  AMASLVNQSANAAIVDEGGKAYLTGLPETGQLLVQWGKDAGQQCRVDYQLSPAEKGDTGL  829
            A   +  Q ++A +VD +++ YLTGL++ G+L V+WG   +QQCRV+Y+L PA+KG +GL
Sbjct  773  AQVIVNGQDGSADLVDTDSQVYLTGLADKGELTVKWG---AQQCRVNYHL-PAHKGIAGL  828

Query  830  YMLSGVCH  837
            Y +SG+C+
Sbjct  829  YQMSGLCR  836

39) psaC in NC_003143


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  613 bits (2315),  Expect = 2e-176, Method: Compositional matrix adjust.
 Identities = 386/848 (46%), Positives = 606/848 (72%), Gaps = 28/848 (3%)

Query  6    VQFTTITLLMSTSFLV---GAQRYSFDPNLLVDGNNNTDTSLFEQGNELPGTYLVDIILN  62
            ++F   +LL+  + +V    A+ Y+FD+++L D+ +  D SLF+QG + PGTY VD+++N
Sbjct  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60

Query  63   GNKVDSTNVTFHSEKSPSGEPFLQSCLTKEQLSRYGVDVDAYPELSPALKNSQTNPCVNL  122
            G++VD+ +V F  EK   G PFL SCLT  QLSRYGV  + YP+L  A K +  + C +L
Sbjct  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTP--DECADL  118

Query  123  AAIPQASEEFQFYNMQLVLSIPQAALRPE--GEVPIERWDDGITAFLLNYMANISETQFR  180
            +AIPQA   +++ N QL LSIPQ ALRPE  G  P + WDDGI AFL+NY A  ++T+++
Sbjct  119  TAIPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYK  178

Query  181  QN-GGYRRSQYIQLYPGLNLGAWRVRNATNWSQSGDRGGKWQSAYTYATRGIYRLKSRVT  239
             +  G   S  +QL PG+N+GAWRVRNAT+W +S++ +GKWQ+AYTYA RG+Y LKSR+T
Sbjct  179  MDMVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLT  238

Query  240  LGESYTPGDFFDSIPFRGVMLGDDPNMQPSNQRDFIPVVRGIARSQAQVEIRQNGYLIYS  299
            LG+  + G++FDS+PF GVML+ D NM P ++R+F PVVRGIAR+QA+VE++QNGY IY+
Sbjct  239  LGQKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYN  298

Query  300  TVVPPGPFELSDVIPSKSGSDLHVRVLESNGASQAFIVPYEVPAIALRKGHLRYNLVAGQ  359
            T V+PGPF L D+  + S++DLHV V E++G++Q F+VPY+ PAIAL++G L+Y+L+AG+
Sbjct  299  TTVAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGR  358

Query  360  YRPANADVETPPVAQATVAYGLPWNLTAFIGEQWSRHYQATsaglggllgeygalsssIT  419
            YR++++  + + +AQAT+ YGLPWNLTA+ G Q + HYQA+S GLGG LG  G+LS   +
Sbjct  359  YRSSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGS  418

Query  420  QATSQYHHQQPVKGQAWEVRYNKTLQASDTSFSLVNSQYSTNGFSTLSDVLQSYRQSGSG  479
            ++ SQ + +   +G +W +RY++ L A++T++ L   QY+++G++TLSDVL+SYR++G+ 
Sbjct  419  DTHSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNR  478

Query  480  --DNRDKIDENSRSRDLRNQISAVIGQSLGKFGYLNLNWSRQVYRGPIPAKNSLGIHYNL  537
                R++++ +SR+  +   +S   G+ LG+++ +    SR   R      +S G+    
Sbjct  479  LWSWRENLQPSSRTTLM---LSQSWGRHLGNLSLIG---SRTDWRNRPGHDDSYGLSWGT  532

Query  538  NVGNSFWALSWVQN-----ANENKNDRILSLSVSIPLG--GHHDTYASYRMTS-SNGSND  589
            ++G +  +L+W QN        ++++ I SL  S+PL+    ++  AS +MTS S+G++ 
Sbjct  533  SIGGGSLSLNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQT  592

Query  590  HEIGMYGQAFDSRLSWSVRQAEHYGQPNSGHNSGSLRLGWQGSYGNIAGNYYYTPSIRQL  649
            +++G+ G+AF  +L W VRQ+ + + P +G N+++L+L+W+G+YG ++G+Y Y+ ++RQ+
Sbjct  593  QQVGVNGEAFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQM  652

Query  650  SADVSGGAIIHRHGLTLGPQINGTSvlvevpgvggvtttEDRRLKTDFRGYSIVSGLSPY  709
            + +++GG +IH+HG+TLG  ++G+  LVE PG +GV       +KTDFRG + V+ LS Y
Sbjct  653  GVNIAGGIVIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVY  712

Query  710  QEHDIVLETADLPPDAEVAKTDTKVLPTEGAIVRASFSPQIGAKALMTITRANGQTIPFG  769
            QE+ + L+ ++LP DAEV++TD +V+PTEGA+V A F  +IGA+ALMT+ R +G +IPFG
Sbjct  713  QENTVSLDPSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFG  772

Query  770  AMASLVNQSANAAIVDEGGKAYLTGLPETGQLLVQWGKDAGQQCRVDYQLSPAEKGDTGL  829
            A   +  Q ++A +VD +++ YLTGL++ G+L V+WG   +QQCRV+Y+L PA+KG +GL
Sbjct  773  AQVIVNGQDGSADLVDTDSQVYLTGLADKGELTVKWG---AQQCRVNYHL-PAHKGIAGL  828

Query  830  YMLSGVCH  837
            Y +SG+C+
Sbjct  829  YQMSGLCR  836

40) psaC in NC_004088


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  613 bits (2315),  Expect = 2e-176, Method: Compositional matrix adjust.
 Identities = 386/848 (46%), Positives = 606/848 (72%), Gaps = 28/848 (3%)

Query  6    VQFTTITLLMSTSFLV---GAQRYSFDPNLLVDGNNNTDTSLFEQGNELPGTYLVDIILN  62
            ++F   +LL+  + +V    A+ Y+FD+++L D+ +  D SLF+QG + PGTY VD+++N
Sbjct  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60

Query  63   GNKVDSTNVTFHSEKSPSGEPFLQSCLTKEQLSRYGVDVDAYPELSPALKNSQTNPCVNL  122
            G++VD+ +V F  EK   G PFL SCLT  QLSRYGV  + YP+L  A K +  + C +L
Sbjct  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTP--DECADL  118

Query  123  AAIPQASEEFQFYNMQLVLSIPQAALRPE--GEVPIERWDDGITAFLLNYMANISETQFR  180
            +AIPQA   +++ N QL LSIPQ ALRPE  G  P + WDDGI AFL+NY A  ++T+++
Sbjct  119  TAIPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYK  178

Query  181  QN-GGYRRSQYIQLYPGLNLGAWRVRNATNWSQSGDRGGKWQSAYTYATRGIYRLKSRVT  239
             +  G   S  +QL PG+N+GAWRVRNAT+W +S++ +GKWQ+AYTYA RG+Y LKSR+T
Sbjct  179  MDMVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLT  238

Query  240  LGESYTPGDFFDSIPFRGVMLGDDPNMQPSNQRDFIPVVRGIARSQAQVEIRQNGYLIYS  299
            LG+  + G++FDS+PF GVML+ D NM P ++R+F PVVRGIAR+QA+VE++QNGY IY+
Sbjct  239  LGQKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYN  298

Query  300  TVVPPGPFELSDVIPSKSGSDLHVRVLESNGASQAFIVPYEVPAIALRKGHLRYNLVAGQ  359
            T V+PGPF L D+  + S++DLHV V E++G++Q F+VPY+ PAIAL++G L+Y+L+AG+
Sbjct  299  TTVAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGR  358

Query  360  YRPANADVETPPVAQATVAYGLPWNLTAFIGEQWSRHYQATsaglggllgeygalsssIT  419
            YR++++  + + +AQAT+ YGLPWNLTA+ G Q + HYQA+S GLGG LG  G+LS   +
Sbjct  359  YRSSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGS  418

Query  420  QATSQYHHQQPVKGQAWEVRYNKTLQASDTSFSLVNSQYSTNGFSTLSDVLQSYRQSGSG  479
            ++ SQ + +   +G +W +RY++ L A++T++ L   QY+++G++TLSDVL+SYR++G+ 
Sbjct  419  DTHSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNR  478

Query  480  --DNRDKIDENSRSRDLRNQISAVIGQSLGKFGYLNLNWSRQVYRGPIPAKNSLGIHYNL  537
                R++++ +SR+  +   +S   G+ LG+++ +    SR   R      +S G+    
Sbjct  479  LWSWRENLQPSSRTTLM---LSQSWGRHLGNLSLIG---SRTDWRNRPGHDDSYGLSWGT  532

Query  538  NVGNSFWALSWVQN-----ANENKNDRILSLSVSIPLG--GHHDTYASYRMTS-SNGSND  589
            ++G +  +L+W QN        ++++ I SL  S+PL+    ++  AS +MTS S+G++ 
Sbjct  533  SIGGGSLSLNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQT  592

Query  590  HEIGMYGQAFDSRLSWSVRQAEHYGQPNSGHNSGSLRLGWQGSYGNIAGNYYYTPSIRQL  649
            +++G+ G+AF  +L W VRQ+ + + P +G N+++L+L+W+G+YG ++G+Y Y+ ++RQ+
Sbjct  593  QQVGVNGEAFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQM  652

Query  650  SADVSGGAIIHRHGLTLGPQINGTSvlvevpgvggvtttEDRRLKTDFRGYSIVSGLSPY  709
            + +++GG +IH+HG+TLG  ++G+  LVE PG +GV       +KTDFRG + V+ LS Y
Sbjct  653  GVNIAGGIVIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVY  712

Query  710  QEHDIVLETADLPPDAEVAKTDTKVLPTEGAIVRASFSPQIGAKALMTITRANGQTIPFG  769
            QE+ + L+ ++LP DAEV++TD +V+PTEGA+V A F  +IGA+ALMT+ R +G +IPFG
Sbjct  713  QENTVSLDPSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFG  772

Query  770  AMASLVNQSANAAIVDEGGKAYLTGLPETGQLLVQWGKDAGQQCRVDYQLSPAEKGDTGL  829
            A   +  Q ++A +VD +++ YLTGL++ G+L V+WG   +QQCRV+Y+L PA+KG +GL
Sbjct  773  AQVIVNGQDGSADLVDTDSQVYLTGLADKGELTVKWG---AQQCRVNYHL-PAHKGIAGL  828

Query  830  YMLSGVCH  837
            Y +SG+C+
Sbjct  829  YQMSGLCR  836

41) A1122_20415 in NC_017168


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  611 bits (2309),  Expect = 6e-176, Method: Compositional matrix adjust.
 Identities = 382/828 (47%), Positives = 596/828 (72%), Gaps = 25/828 (3%)

Query  9    AQRYSFDPNLLVDGNNNTDTSLFEQGNELPGTYLVDIILNGNKVDSTNVTFHSEKSPSGE  68
            A+ Y+FD+++L D+ +  D SLF+QG + PGTY VD+++NG++VD+ +V F  EK   G 
Sbjct  21   AHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQGT  80

Query  69   PFLQSCLTKEQLSRYGVDVDAYPELSPALKNSQTNPCVNLAAIPQASEEFQFYNMQLVLS  128
            PFL SCLT  QLSRYGV  + YP+L  A K +  + C +L+AIPQA   +++ N QL LS
Sbjct  81   PFLASCLTVSQLSRYGVKTEDYPQLWKAAKTP--DECADLTAIPQAKAVLDINNQQLQLS  138

Query  129  IPQAALRPE--GEVPIERWDDGITAFLLNYMANISETQFRQN-GGYRRSQYIQLYPGLNL  185
            IPQ ALRPE  G  P + WDDGI AFL+NY A  ++T+++ +  G   S  +QL PG+N+
Sbjct  139  IPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRDNSSWVQLQPGINI  198

Query  186  GAWRVRNATNWSQSGDRGGKWQSAYTYATRGIYRLKSRVTLGESYTPGDFFDSIPFRGVM  245
            GAWRVRNAT+W +S++ +GKWQ+AYTYA RG+Y LKSR+TLG+  + G++FDS+PF GVM
Sbjct  199  GAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTGVM  258

Query  246  LGDDPNMQPSNQRDFIPVVRGIARSQAQVEIRQNGYLIYSTVVPPGPFELSDVIPSKSGS  305
            L+ D NM P ++R+F PVVRGIAR+QA+VE++QNGY IY+T V+PGPF L D+  + S++
Sbjct  259  LASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSG  318

Query  306  DLHVRVLESNGASQAFIVPYEVPAIALRKGHLRYNLVAGQYRPANADVETPPVAQATVAY  365
            DLHV V E++G++Q F+VPY+ PAIAL++G L+Y+L+AG+YR++++  + + +AQAT+ Y
Sbjct  319  DLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATLMY  378

Query  366  GLPWNLTAFIGEQWSRHYQATsaglggllgeygalsssITQATSQYHHQQPVKGQAWEVR  425
            GLPWNLTA+ G Q + HYQA+S GLGG LG  G+LS   +++ SQ + +   +G +W +R
Sbjct  379  GLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLR  438

Query  426  YNKTLQASDTSFSLVNSQYSTNGFSTLSDVLQSYRQSGSG--DNRDKIDENSRSRDLRNQ  483
            Y++ L A++T++ L   QY+++G++TLSDVL+SYR++G+     R++++ +SR+  + +Q
Sbjct  439  YSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQPSSRTTLMLSQ  498

Query  484  ISAVIGQSLGKFGYLNLNWSRQVYRGPIPAKNSLGIHYNLNVGNSFWALSWVQN-----A  538
                 G+ LG+++ +    SR   R      +S G+    ++G +  +L+W QN      
Sbjct  499  SW---GRHLGNLSLIG---SRTDWRNRPGHDDSYGLSWGTSIGGGSLSLNWNQNRTLWRN  552

Query  539  NENKNDRILSLSVSIPLG--GHHDTYASYRMTS-SNGSNDHEIGMYGQAFDSRLSWSVRQ  595
              ++++ I SL  S+PL+    ++  AS +MTS S+G++ +++G+ G+AF  +L W VRQ
Sbjct  553  GGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQ  612

Query  596  AEHYGQPNSGHNSGSLRLGWQGSYGNIAGNYYYTPSIRQLSADVSGGAIIHRHGLTLGPQ  655
            + + + P +G N+++L+L+W+G+YG ++G+Y Y+ ++RQ++ +++GG +IH+HG+TLG  
Sbjct  613  SYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQP  672

Query  656  INGTSvlvevpgvggvtttEDRRLKTDFRGYSIVSGLSPYQEHDIVLETADLPPDAEVAK  715
            ++G+  LVE PG +GV       +KTDFRG + V+ LS YQE+ + L+ ++LP DAEV++
Sbjct  673  LQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLDPSQLPDDAEVTQ  732

Query  716  TDTKVLPTEGAIVRASFSPQIGAKALMTITRANGQTIPFGAMASLVNQSANAAIVDEGGK  775
            TD +V+PTEGA+V A F  +IGA+ALMT+ R +G +IPFGA   +  Q ++A +VD +++
Sbjct  733  TDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQDGSADLVDTDSQ  792

Query  776  AYLTGLPETGQLLVQWGKDAGQQCRVDYQLSPAEKGDTGLYMLSGVCH  823
             YLTGL++ G+L V+WG   +QQCRV+Y+L PA+KG +GLY +SG+C+
Sbjct  793  VYLTGLADKGELTVKWG---AQQCRVNYHL-PAHKGIAGLYQMSGLCR  836

42) YpAngola_A1531 in NC_010159


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  611 bits (2309),  Expect = 6e-176, Method: Compositional matrix adjust.
 Identities = 382/828 (47%), Positives = 596/828 (72%), Gaps = 25/828 (3%)

Query  9    AQRYSFDPNLLVDGNNNTDTSLFEQGNELPGTYLVDIILNGNKVDSTNVTFHSEKSPSGE  68
            A+ Y+FD+++L D+ +  D SLF+QG + PGTY VD+++NG++VD+ +V F  EK   G 
Sbjct  21   AHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQGT  80

Query  69   PFLQSCLTKEQLSRYGVDVDAYPELSPALKNSQTNPCVNLAAIPQASEEFQFYNMQLVLS  128
            PFL SCLT  QLSRYGV  + YP+L  A K +  + C +L+AIPQA   +++ N QL LS
Sbjct  81   PFLASCLTVSQLSRYGVKTEDYPQLWKAAKTP--DECADLTAIPQAKAVLDINNQQLQLS  138

Query  129  IPQAALRPE--GEVPIERWDDGITAFLLNYMANISETQFRQN-GGYRRSQYIQLYPGLNL  185
            IPQ ALRPE  G  P + WDDGI AFL+NY A  ++T+++ +  G   S  +QL PG+N+
Sbjct  139  IPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRDNSSWVQLQPGINI  198

Query  186  GAWRVRNATNWSQSGDRGGKWQSAYTYATRGIYRLKSRVTLGESYTPGDFFDSIPFRGVM  245
            GAWRVRNAT+W +S++ +GKWQ+AYTYA RG+Y LKSR+TLG+  + G++FDS+PF GVM
Sbjct  199  GAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTGVM  258

Query  246  LGDDPNMQPSNQRDFIPVVRGIARSQAQVEIRQNGYLIYSTVVPPGPFELSDVIPSKSGS  305
            L+ D NM P ++R+F PVVRGIAR+QA+VE++QNGY IY+T V+PGPF L D+  + S++
Sbjct  259  LASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSG  318

Query  306  DLHVRVLESNGASQAFIVPYEVPAIALRKGHLRYNLVAGQYRPANADVETPPVAQATVAY  365
            DLHV V E++G++Q F+VPY+ PAIAL++G L+Y+L+AG+YR++++  + + +AQAT+ Y
Sbjct  319  DLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATLMY  378

Query  366  GLPWNLTAFIGEQWSRHYQATsaglggllgeygalsssITQATSQYHHQQPVKGQAWEVR  425
            GLPWNLTA+ G Q + HYQA+S GLGG LG  G+LS   +++ SQ + +   +G +W +R
Sbjct  379  GLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLR  438

Query  426  YNKTLQASDTSFSLVNSQYSTNGFSTLSDVLQSYRQSGSG--DNRDKIDENSRSRDLRNQ  483
            Y++ L A++T++ L   QY+++G++TLSDVL+SYR++G+     R++++ +SR+  + +Q
Sbjct  439  YSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQPSSRTTLMLSQ  498

Query  484  ISAVIGQSLGKFGYLNLNWSRQVYRGPIPAKNSLGIHYNLNVGNSFWALSWVQN-----A  538
                 G+ LG+++ +    SR   R      +S G+    ++G +  +L+W QN      
Sbjct  499  SW---GRHLGNLSLIG---SRTDWRNRPGHDDSYGLSWGTSIGGGSLSLNWNQNRTLWRN  552

Query  539  NENKNDRILSLSVSIPLG--GHHDTYASYRMTS-SNGSNDHEIGMYGQAFDSRLSWSVRQ  595
              ++++ I SL  S+PL+    ++  AS +MTS S+G++ +++G+ G+AF  +L W VRQ
Sbjct  553  GGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQ  612

Query  596  AEHYGQPNSGHNSGSLRLGWQGSYGNIAGNYYYTPSIRQLSADVSGGAIIHRHGLTLGPQ  655
            + + + P +G N+++L+L+W+G+YG ++G+Y Y+ ++RQ++ +++GG +IH+HG+TLG  
Sbjct  613  SYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQP  672

Query  656  INGTSvlvevpgvggvtttEDRRLKTDFRGYSIVSGLSPYQEHDIVLETADLPPDAEVAK  715
            ++G+  LVE PG +GV       +KTDFRG + V+ LS YQE+ + L+ ++LP DAEV++
Sbjct  673  LQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLDPSQLPDDAEVTQ  732

Query  716  TDTKVLPTEGAIVRASFSPQIGAKALMTITRANGQTIPFGAMASLVNQSANAAIVDEGGK  775
            TD +V+PTEGA+V A F  +IGA+ALMT+ R +G +IPFGA   +  Q ++A +VD +++
Sbjct  733  TDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQDGSADLVDTDSQ  792

Query  776  AYLTGLPETGQLLVQWGKDAGQQCRVDYQLSPAEKGDTGLYMLSGVCH  823
             YLTGL++ G+L V+WG   +QQCRV+Y+L PA+KG +GLY +SG+C+
Sbjct  793  VYLTGLADKGELTVKWG---AQQCRVNYHL-PAHKGIAGLYQMSGLCR  836

43) YPA_1022 in NC_008150


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  611 bits (2309),  Expect = 6e-176, Method: Compositional matrix adjust.
 Identities = 382/828 (47%), Positives = 596/828 (72%), Gaps = 25/828 (3%)

Query  9    AQRYSFDPNLLVDGNNNTDTSLFEQGNELPGTYLVDIILNGNKVDSTNVTFHSEKSPSGE  68
            A+ Y+FD+++L D+ +  D SLF+QG + PGTY VD+++NG++VD+ +V F  EK   G 
Sbjct  21   AHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQGT  80

Query  69   PFLQSCLTKEQLSRYGVDVDAYPELSPALKNSQTNPCVNLAAIPQASEEFQFYNMQLVLS  128
            PFL SCLT  QLSRYGV  + YP+L  A K +  + C +L+AIPQA   +++ N QL LS
Sbjct  81   PFLASCLTVSQLSRYGVKTEDYPQLWKAAKTP--DECADLTAIPQAKAVLDINNQQLQLS  138

Query  129  IPQAALRPE--GEVPIERWDDGITAFLLNYMANISETQFRQN-GGYRRSQYIQLYPGLNL  185
            IPQ ALRPE  G  P + WDDGI AFL+NY A  ++T+++ +  G   S  +QL PG+N+
Sbjct  139  IPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRDNSSWVQLQPGINI  198

Query  186  GAWRVRNATNWSQSGDRGGKWQSAYTYATRGIYRLKSRVTLGESYTPGDFFDSIPFRGVM  245
            GAWRVRNAT+W +S++ +GKWQ+AYTYA RG+Y LKSR+TLG+  + G++FDS+PF GVM
Sbjct  199  GAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTGVM  258

Query  246  LGDDPNMQPSNQRDFIPVVRGIARSQAQVEIRQNGYLIYSTVVPPGPFELSDVIPSKSGS  305
            L+ D NM P ++R+F PVVRGIAR+QA+VE++QNGY IY+T V+PGPF L D+  + S++
Sbjct  259  LASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSG  318

Query  306  DLHVRVLESNGASQAFIVPYEVPAIALRKGHLRYNLVAGQYRPANADVETPPVAQATVAY  365
            DLHV V E++G++Q F+VPY+ PAIAL++G L+Y+L+AG+YR++++  + + +AQAT+ Y
Sbjct  319  DLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATLMY  378

Query  366  GLPWNLTAFIGEQWSRHYQATsaglggllgeygalsssITQATSQYHHQQPVKGQAWEVR  425
            GLPWNLTA+ G Q + HYQA+S GLGG LG  G+LS   +++ SQ + +   +G +W +R
Sbjct  379  GLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLR  438

Query  426  YNKTLQASDTSFSLVNSQYSTNGFSTLSDVLQSYRQSGSG--DNRDKIDENSRSRDLRNQ  483
            Y++ L A++T++ L   QY+++G++TLSDVL+SYR++G+     R++++ +SR+  + +Q
Sbjct  439  YSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQPSSRTTLMLSQ  498

Query  484  ISAVIGQSLGKFGYLNLNWSRQVYRGPIPAKNSLGIHYNLNVGNSFWALSWVQN-----A  538
                 G+ LG+++ +    SR   R      +S G+    ++G +  +L+W QN      
Sbjct  499  SW---GRHLGNLSLIG---SRTDWRNRPGHDDSYGLSWGTSIGGGSLSLNWNQNRTLWRN  552

Query  539  NENKNDRILSLSVSIPLG--GHHDTYASYRMTS-SNGSNDHEIGMYGQAFDSRLSWSVRQ  595
              ++++ I SL  S+PL+    ++  AS +MTS S+G++ +++G+ G+AF  +L W VRQ
Sbjct  553  GGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQ  612

Query  596  AEHYGQPNSGHNSGSLRLGWQGSYGNIAGNYYYTPSIRQLSADVSGGAIIHRHGLTLGPQ  655
            + + + P +G N+++L+L+W+G+YG ++G+Y Y+ ++RQ++ +++GG +IH+HG+TLG  
Sbjct  613  SYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQP  672

Query  656  INGTSvlvevpgvggvtttEDRRLKTDFRGYSIVSGLSPYQEHDIVLETADLPPDAEVAK  715
            ++G+  LVE PG +GV       +KTDFRG + V+ LS YQE+ + L+ ++LP DAEV++
Sbjct  673  LQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLDPSQLPDDAEVTQ  732

Query  716  TDTKVLPTEGAIVRASFSPQIGAKALMTITRANGQTIPFGAMASLVNQSANAAIVDEGGK  775
            TD +V+PTEGA+V A F  +IGA+ALMT+ R +G +IPFGA   +  Q ++A +VD +++
Sbjct  733  TDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQDGSADLVDTDSQ  792

Query  776  AYLTGLPETGQLLVQWGKDAGQQCRVDYQLSPAEKGDTGLYMLSGVCH  823
             YLTGL++ G+L V+WG   +QQCRV+Y+L PA+KG +GLY +SG+C+
Sbjct  793  VYLTGLADKGELTVKWG---AQQCRVNYHL-PAHKGIAGLYQMSGLCR  836

44) YPD4_1154 in NC_017154


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  611 bits (2309),  Expect = 6e-176, Method: Compositional matrix adjust.
 Identities = 382/828 (47%), Positives = 596/828 (72%), Gaps = 25/828 (3%)

Query  9    AQRYSFDPNLLVDGNNNTDTSLFEQGNELPGTYLVDIILNGNKVDSTNVTFHSEKSPSGE  68
            A+ Y+FD+++L D+ +  D SLF+QG + PGTY VD+++NG++VD+ +V F  EK   G 
Sbjct  21   AHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQGT  80

Query  69   PFLQSCLTKEQLSRYGVDVDAYPELSPALKNSQTNPCVNLAAIPQASEEFQFYNMQLVLS  128
            PFL SCLT  QLSRYGV  + YP+L  A K +  + C +L+AIPQA   +++ N QL LS
Sbjct  81   PFLASCLTVSQLSRYGVKTEDYPQLWKAAKTP--DECADLTAIPQAKAVLDINNQQLQLS  138

Query  129  IPQAALRPE--GEVPIERWDDGITAFLLNYMANISETQFRQN-GGYRRSQYIQLYPGLNL  185
            IPQ ALRPE  G  P + WDDGI AFL+NY A  ++T+++ +  G   S  +QL PG+N+
Sbjct  139  IPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRDNSSWVQLQPGINI  198

Query  186  GAWRVRNATNWSQSGDRGGKWQSAYTYATRGIYRLKSRVTLGESYTPGDFFDSIPFRGVM  245
            GAWRVRNAT+W +S++ +GKWQ+AYTYA RG+Y LKSR+TLG+  + G++FDS+PF GVM
Sbjct  199  GAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTGVM  258

Query  246  LGDDPNMQPSNQRDFIPVVRGIARSQAQVEIRQNGYLIYSTVVPPGPFELSDVIPSKSGS  305
            L+ D NM P ++R+F PVVRGIAR+QA+VE++QNGY IY+T V+PGPF L D+  + S++
Sbjct  259  LASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSG  318

Query  306  DLHVRVLESNGASQAFIVPYEVPAIALRKGHLRYNLVAGQYRPANADVETPPVAQATVAY  365
            DLHV V E++G++Q F+VPY+ PAIAL++G L+Y+L+AG+YR++++  + + +AQAT+ Y
Sbjct  319  DLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATLMY  378

Query  366  GLPWNLTAFIGEQWSRHYQATsaglggllgeygalsssITQATSQYHHQQPVKGQAWEVR  425
            GLPWNLTA+ G Q + HYQA+S GLGG LG  G+LS   +++ SQ + +   +G +W +R
Sbjct  379  GLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLR  438

Query  426  YNKTLQASDTSFSLVNSQYSTNGFSTLSDVLQSYRQSGSG--DNRDKIDENSRSRDLRNQ  483
            Y++ L A++T++ L   QY+++G++TLSDVL+SYR++G+     R++++ +SR+  + +Q
Sbjct  439  YSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQPSSRTTLMLSQ  498

Query  484  ISAVIGQSLGKFGYLNLNWSRQVYRGPIPAKNSLGIHYNLNVGNSFWALSWVQN-----A  538
                 G+ LG+++ +    SR   R      +S G+    ++G +  +L+W QN      
Sbjct  499  SW---GRHLGNLSLIG---SRTDWRNRPGHDDSYGLSWGTSIGGGSLSLNWNQNRTLWRN  552

Query  539  NENKNDRILSLSVSIPLG--GHHDTYASYRMTS-SNGSNDHEIGMYGQAFDSRLSWSVRQ  595
              ++++ I SL  S+PL+    ++  AS +MTS S+G++ +++G+ G+AF  +L W VRQ
Sbjct  553  GGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQ  612

Query  596  AEHYGQPNSGHNSGSLRLGWQGSYGNIAGNYYYTPSIRQLSADVSGGAIIHRHGLTLGPQ  655
            + + + P +G N+++L+L+W+G+YG ++G+Y Y+ ++RQ++ +++GG +IH+HG+TLG  
Sbjct  613  SYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQP  672

Query  656  INGTSvlvevpgvggvtttEDRRLKTDFRGYSIVSGLSPYQEHDIVLETADLPPDAEVAK  715
            ++G+  LVE PG +GV       +KTDFRG + V+ LS YQE+ + L+ ++LP DAEV++
Sbjct  673  LQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLDPSQLPDDAEVTQ  732

Query  716  TDTKVLPTEGAIVRASFSPQIGAKALMTITRANGQTIPFGAMASLVNQSANAAIVDEGGK  775
            TD +V+PTEGA+V A F  +IGA+ALMT+ R +G +IPFGA   +  Q ++A +VD +++
Sbjct  733  TDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQDGSADLVDTDSQ  792

Query  776  AYLTGLPETGQLLVQWGKDAGQQCRVDYQLSPAEKGDTGLYMLSGVCH  823
             YLTGL++ G+L V+WG   +QQCRV+Y+L PA+KG +GLY +SG+C+
Sbjct  793  VYLTGLADKGELTVKWG---AQQCRVNYHL-PAHKGIAGLYQMSGLCR  836

45) YPN_2674 in NC_008149


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  611 bits (2309),  Expect = 6e-176, Method: Compositional matrix adjust.
 Identities = 382/828 (47%), Positives = 596/828 (72%), Gaps = 25/828 (3%)

Query  9    AQRYSFDPNLLVDGNNNTDTSLFEQGNELPGTYLVDIILNGNKVDSTNVTFHSEKSPSGE  68
            A+ Y+FD+++L D+ +  D SLF+QG + PGTY VD+++NG++VD+ +V F  EK   G 
Sbjct  21   AHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQGT  80

Query  69   PFLQSCLTKEQLSRYGVDVDAYPELSPALKNSQTNPCVNLAAIPQASEEFQFYNMQLVLS  128
            PFL SCLT  QLSRYGV  + YP+L  A K +  + C +L+AIPQA   +++ N QL LS
Sbjct  81   PFLASCLTVSQLSRYGVKTEDYPQLWKAAKTP--DECADLTAIPQAKAVLDINNQQLQLS  138

Query  129  IPQAALRPE--GEVPIERWDDGITAFLLNYMANISETQFRQN-GGYRRSQYIQLYPGLNL  185
            IPQ ALRPE  G  P + WDDGI AFL+NY A  ++T+++ +  G   S  +QL PG+N+
Sbjct  139  IPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRDNSSWVQLQPGINI  198

Query  186  GAWRVRNATNWSQSGDRGGKWQSAYTYATRGIYRLKSRVTLGESYTPGDFFDSIPFRGVM  245
            GAWRVRNAT+W +S++ +GKWQ+AYTYA RG+Y LKSR+TLG+  + G++FDS+PF GVM
Sbjct  199  GAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTGVM  258

Query  246  LGDDPNMQPSNQRDFIPVVRGIARSQAQVEIRQNGYLIYSTVVPPGPFELSDVIPSKSGS  305
            L+ D NM P ++R+F PVVRGIAR+QA+VE++QNGY IY+T V+PGPF L D+  + S++
Sbjct  259  LASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSG  318

Query  306  DLHVRVLESNGASQAFIVPYEVPAIALRKGHLRYNLVAGQYRPANADVETPPVAQATVAY  365
            DLHV V E++G++Q F+VPY+ PAIAL++G L+Y+L+AG+YR++++  + + +AQAT+ Y
Sbjct  319  DLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATLMY  378

Query  366  GLPWNLTAFIGEQWSRHYQATsaglggllgeygalsssITQATSQYHHQQPVKGQAWEVR  425
            GLPWNLTA+ G Q + HYQA+S GLGG LG  G+LS   +++ SQ + +   +G +W +R
Sbjct  379  GLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLR  438

Query  426  YNKTLQASDTSFSLVNSQYSTNGFSTLSDVLQSYRQSGSG--DNRDKIDENSRSRDLRNQ  483
            Y++ L A++T++ L   QY+++G++TLSDVL+SYR++G+     R++++ +SR+  + +Q
Sbjct  439  YSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQPSSRTTLMLSQ  498

Query  484  ISAVIGQSLGKFGYLNLNWSRQVYRGPIPAKNSLGIHYNLNVGNSFWALSWVQN-----A  538
                 G+ LG+++ +    SR   R      +S G+    ++G +  +L+W QN      
Sbjct  499  SW---GRHLGNLSLIG---SRTDWRNRPGHDDSYGLSWGTSIGGGSLSLNWNQNRTLWRN  552

Query  539  NENKNDRILSLSVSIPLG--GHHDTYASYRMTS-SNGSNDHEIGMYGQAFDSRLSWSVRQ  595
              ++++ I SL  S+PL+    ++  AS +MTS S+G++ +++G+ G+AF  +L W VRQ
Sbjct  553  GGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQ  612

Query  596  AEHYGQPNSGHNSGSLRLGWQGSYGNIAGNYYYTPSIRQLSADVSGGAIIHRHGLTLGPQ  655
            + + + P +G N+++L+L+W+G+YG ++G+Y Y+ ++RQ++ +++GG +IH+HG+TLG  
Sbjct  613  SYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQP  672

Query  656  INGTSvlvevpgvggvtttEDRRLKTDFRGYSIVSGLSPYQEHDIVLETADLPPDAEVAK  715
            ++G+  LVE PG +GV       +KTDFRG + V+ LS YQE+ + L+ ++LP DAEV++
Sbjct  673  LQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLDPSQLPDDAEVTQ  732

Query  716  TDTKVLPTEGAIVRASFSPQIGAKALMTITRANGQTIPFGAMASLVNQSANAAIVDEGGK  775
            TD +V+PTEGA+V A F  +IGA+ALMT+ R +G +IPFGA   +  Q ++A +VD +++
Sbjct  733  TDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQDGSADLVDTDSQ  792

Query  776  AYLTGLPETGQLLVQWGKDAGQQCRVDYQLSPAEKGDTGLYMLSGVCH  823
             YLTGL++ G+L V+WG   +QQCRV+Y+L PA+KG +GLY +SG+C+
Sbjct  793  VYLTGLADKGELTVKWG---AQQCRVNYHL-PAHKGIAGLYQMSGLCR  836

46) YPDSF_2392 in NC_009381


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  611 bits (2309),  Expect = 6e-176, Method: Compositional matrix adjust.
 Identities = 382/828 (47%), Positives = 596/828 (72%), Gaps = 25/828 (3%)

Query  9    AQRYSFDPNLLVDGNNNTDTSLFEQGNELPGTYLVDIILNGNKVDSTNVTFHSEKSPSGE  68
            A+ Y+FD+++L D+ +  D SLF+QG + PGTY VD+++NG++VD+ +V F  EK   G 
Sbjct  21   AHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQGT  80

Query  69   PFLQSCLTKEQLSRYGVDVDAYPELSPALKNSQTNPCVNLAAIPQASEEFQFYNMQLVLS  128
            PFL SCLT  QLSRYGV  + YP+L  A K +  + C +L+AIPQA   +++ N QL LS
Sbjct  81   PFLASCLTVSQLSRYGVKTEDYPQLWKAAKTP--DECADLTAIPQAKAVLDINNQQLQLS  138

Query  129  IPQAALRPE--GEVPIERWDDGITAFLLNYMANISETQFRQN-GGYRRSQYIQLYPGLNL  185
            IPQ ALRPE  G  P + WDDGI AFL+NY A  ++T+++ +  G   S  +QL PG+N+
Sbjct  139  IPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRDNSSWVQLQPGINI  198

Query  186  GAWRVRNATNWSQSGDRGGKWQSAYTYATRGIYRLKSRVTLGESYTPGDFFDSIPFRGVM  245
            GAWRVRNAT+W +S++ +GKWQ+AYTYA RG+Y LKSR+TLG+  + G++FDS+PF GVM
Sbjct  199  GAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTGVM  258

Query  246  LGDDPNMQPSNQRDFIPVVRGIARSQAQVEIRQNGYLIYSTVVPPGPFELSDVIPSKSGS  305
            L+ D NM P ++R+F PVVRGIAR+QA+VE++QNGY IY+T V+PGPF L D+  + S++
Sbjct  259  LASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSG  318

Query  306  DLHVRVLESNGASQAFIVPYEVPAIALRKGHLRYNLVAGQYRPANADVETPPVAQATVAY  365
            DLHV V E++G++Q F+VPY+ PAIAL++G L+Y+L+AG+YR++++  + + +AQAT+ Y
Sbjct  319  DLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATLMY  378

Query  366  GLPWNLTAFIGEQWSRHYQATsaglggllgeygalsssITQATSQYHHQQPVKGQAWEVR  425
            GLPWNLTA+ G Q + HYQA+S GLGG LG  G+LS   +++ SQ + +   +G +W +R
Sbjct  379  GLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLR  438

Query  426  YNKTLQASDTSFSLVNSQYSTNGFSTLSDVLQSYRQSGSG--DNRDKIDENSRSRDLRNQ  483
            Y++ L A++T++ L   QY+++G++TLSDVL+SYR++G+     R++++ +SR+  + +Q
Sbjct  439  YSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQPSSRTTLMLSQ  498

Query  484  ISAVIGQSLGKFGYLNLNWSRQVYRGPIPAKNSLGIHYNLNVGNSFWALSWVQN-----A  538
                 G+ LG+++ +    SR   R      +S G+    ++G +  +L+W QN      
Sbjct  499  SW---GRHLGNLSLIG---SRTDWRNRPGHDDSYGLSWGTSIGGGSLSLNWNQNRTLWRN  552

Query  539  NENKNDRILSLSVSIPLG--GHHDTYASYRMTS-SNGSNDHEIGMYGQAFDSRLSWSVRQ  595
              ++++ I SL  S+PL+    ++  AS +MTS S+G++ +++G+ G+AF  +L W VRQ
Sbjct  553  GGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQ  612

Query  596  AEHYGQPNSGHNSGSLRLGWQGSYGNIAGNYYYTPSIRQLSADVSGGAIIHRHGLTLGPQ  655
            + + + P +G N+++L+L+W+G+YG ++G+Y Y+ ++RQ++ +++GG +IH+HG+TLG  
Sbjct  613  SYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQP  672

Query  656  INGTSvlvevpgvggvtttEDRRLKTDFRGYSIVSGLSPYQEHDIVLETADLPPDAEVAK  715
            ++G+  LVE PG +GV       +KTDFRG + V+ LS YQE+ + L+ ++LP DAEV++
Sbjct  673  LQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLDPSQLPDDAEVTQ  732

Query  716  TDTKVLPTEGAIVRASFSPQIGAKALMTITRANGQTIPFGAMASLVNQSANAAIVDEGGK  775
            TD +V+PTEGA+V A F  +IGA+ALMT+ R +G +IPFGA   +  Q ++A +VD +++
Sbjct  733  TDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQDGSADLVDTDSQ  792

Query  776  AYLTGLPETGQLLVQWGKDAGQQCRVDYQLSPAEKGDTGLYMLSGVCH  823
             YLTGL++ G+L V+WG   +QQCRV+Y+L PA+KG +GLY +SG+C+
Sbjct  793  VYLTGLADKGELTVKWG---AQQCRVNYHL-PAHKGIAGLYQMSGLCR  836

47) YPZ3_1193 in NC_014029


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  611 bits (2309),  Expect = 6e-176, Method: Compositional matrix adjust.
 Identities = 382/828 (47%), Positives = 596/828 (72%), Gaps = 25/828 (3%)

Query  9    AQRYSFDPNLLVDGNNNTDTSLFEQGNELPGTYLVDIILNGNKVDSTNVTFHSEKSPSGE  68
            A+ Y+FD+++L D+ +  D SLF+QG + PGTY VD+++NG++VD+ +V F  EK   G 
Sbjct  21   AHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQGT  80

Query  69   PFLQSCLTKEQLSRYGVDVDAYPELSPALKNSQTNPCVNLAAIPQASEEFQFYNMQLVLS  128
            PFL SCLT  QLSRYGV  + YP+L  A K +  + C +L+AIPQA   +++ N QL LS
Sbjct  81   PFLASCLTVSQLSRYGVKTEDYPQLWKAAKTP--DECADLTAIPQAKAVLDINNQQLQLS  138

Query  129  IPQAALRPE--GEVPIERWDDGITAFLLNYMANISETQFRQN-GGYRRSQYIQLYPGLNL  185
            IPQ ALRPE  G  P + WDDGI AFL+NY A  ++T+++ +  G   S  +QL PG+N+
Sbjct  139  IPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRDNSSWVQLQPGINI  198

Query  186  GAWRVRNATNWSQSGDRGGKWQSAYTYATRGIYRLKSRVTLGESYTPGDFFDSIPFRGVM  245
            GAWRVRNAT+W +S++ +GKWQ+AYTYA RG+Y LKSR+TLG+  + G++FDS+PF GVM
Sbjct  199  GAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTGVM  258

Query  246  LGDDPNMQPSNQRDFIPVVRGIARSQAQVEIRQNGYLIYSTVVPPGPFELSDVIPSKSGS  305
            L+ D NM P ++R+F PVVRGIAR+QA+VE++QNGY IY+T V+PGPF L D+  + S++
Sbjct  259  LASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSG  318

Query  306  DLHVRVLESNGASQAFIVPYEVPAIALRKGHLRYNLVAGQYRPANADVETPPVAQATVAY  365
            DLHV V E++G++Q F+VPY+ PAIAL++G L+Y+L+AG+YR++++  + + +AQAT+ Y
Sbjct  319  DLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATLMY  378

Query  366  GLPWNLTAFIGEQWSRHYQATsaglggllgeygalsssITQATSQYHHQQPVKGQAWEVR  425
            GLPWNLTA+ G Q + HYQA+S GLGG LG  G+LS   +++ SQ + +   +G +W +R
Sbjct  379  GLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLR  438

Query  426  YNKTLQASDTSFSLVNSQYSTNGFSTLSDVLQSYRQSGSG--DNRDKIDENSRSRDLRNQ  483
            Y++ L A++T++ L   QY+++G++TLSDVL+SYR++G+     R++++ +SR+  + +Q
Sbjct  439  YSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQPSSRTTLMLSQ  498

Query  484  ISAVIGQSLGKFGYLNLNWSRQVYRGPIPAKNSLGIHYNLNVGNSFWALSWVQN-----A  538
                 G+ LG+++ +    SR   R      +S G+    ++G +  +L+W QN      
Sbjct  499  SW---GRHLGNLSLIG---SRTDWRNRPGHDDSYGLSWGTSIGGGSLSLNWNQNRTLWRN  552

Query  539  NENKNDRILSLSVSIPLG--GHHDTYASYRMTS-SNGSNDHEIGMYGQAFDSRLSWSVRQ  595
              ++++ I SL  S+PL+    ++  AS +MTS S+G++ +++G+ G+AF  +L W VRQ
Sbjct  553  GGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQ  612

Query  596  AEHYGQPNSGHNSGSLRLGWQGSYGNIAGNYYYTPSIRQLSADVSGGAIIHRHGLTLGPQ  655
            + + + P +G N+++L+L+W+G+YG ++G+Y Y+ ++RQ++ +++GG +IH+HG+TLG  
Sbjct  613  SYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQP  672

Query  656  INGTSvlvevpgvggvtttEDRRLKTDFRGYSIVSGLSPYQEHDIVLETADLPPDAEVAK  715
            ++G+  LVE PG +GV       +KTDFRG + V+ LS YQE+ + L+ ++LP DAEV++
Sbjct  673  LQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLDPSQLPDDAEVTQ  732

Query  716  TDTKVLPTEGAIVRASFSPQIGAKALMTITRANGQTIPFGAMASLVNQSANAAIVDEGGK  775
            TD +V+PTEGA+V A F  +IGA+ALMT+ R +G +IPFGA   +  Q ++A +VD +++
Sbjct  733  TDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQDGSADLVDTDSQ  792

Query  776  AYLTGLPETGQLLVQWGKDAGQQCRVDYQLSPAEKGDTGLYMLSGVCH  823
             YLTGL++ G+L V+WG   +QQCRV+Y+L PA+KG +GLY +SG+C+
Sbjct  793  VYLTGLADKGELTVKWG---AQQCRVNYHL-PAHKGIAGLYQMSGLCR  836

48) YpsIP31758_2676 in NC_009708


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  611 bits (2309),  Expect = 6e-176, Method: Compositional matrix adjust.
 Identities = 382/828 (47%), Positives = 596/828 (72%), Gaps = 25/828 (3%)

Query  9    AQRYSFDPNLLVDGNNNTDTSLFEQGNELPGTYLVDIILNGNKVDSTNVTFHSEKSPSGE  68
            A+ Y+FD+++L D+ +  D SLF+QG + PGTY VD+++NG++VD+ +V F  EK   G 
Sbjct  21   AHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQGT  80

Query  69   PFLQSCLTKEQLSRYGVDVDAYPELSPALKNSQTNPCVNLAAIPQASEEFQFYNMQLVLS  128
            PFL SCLT  QLSRYGV  + YP+L  A K +  + C +L+AIPQA   +++ N QL LS
Sbjct  81   PFLASCLTVSQLSRYGVKTEDYPQLWKAAKTP--DECADLTAIPQAKAVLDINNQQLQLS  138

Query  129  IPQAALRPE--GEVPIERWDDGITAFLLNYMANISETQFRQN-GGYRRSQYIQLYPGLNL  185
            IPQ ALRPE  G  P + WDDGI AFL+NY A  ++T+++ +  G   S  +QL PG+N+
Sbjct  139  IPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRDNSSWVQLQPGINI  198

Query  186  GAWRVRNATNWSQSGDRGGKWQSAYTYATRGIYRLKSRVTLGESYTPGDFFDSIPFRGVM  245
            GAWRVRNAT+W +S++ +GKWQ+AYTYA RG+Y LKSR+TLG+  + G++FDS+PF GVM
Sbjct  199  GAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTGVM  258

Query  246  LGDDPNMQPSNQRDFIPVVRGIARSQAQVEIRQNGYLIYSTVVPPGPFELSDVIPSKSGS  305
            L+ D NM P ++R+F PVVRGIAR+QA+VE++QNGY IY+T V+PGPF L D+  + S++
Sbjct  259  LASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSG  318

Query  306  DLHVRVLESNGASQAFIVPYEVPAIALRKGHLRYNLVAGQYRPANADVETPPVAQATVAY  365
            DLHV V E++G++Q F+VPY+ PAIAL++G L+Y+L+AG+YR++++  + + +AQAT+ Y
Sbjct  319  DLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATLMY  378

Query  366  GLPWNLTAFIGEQWSRHYQATsaglggllgeygalsssITQATSQYHHQQPVKGQAWEVR  425
            GLPWNLTA+ G Q + HYQA+S GLGG LG  G+LS   +++ SQ + +   +G +W +R
Sbjct  379  GLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLR  438

Query  426  YNKTLQASDTSFSLVNSQYSTNGFSTLSDVLQSYRQSGSG--DNRDKIDENSRSRDLRNQ  483
            Y++ L A++T++ L   QY+++G++TLSDVL+SYR++G+     R++++ +SR+  + +Q
Sbjct  439  YSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQPSSRTTLMLSQ  498

Query  484  ISAVIGQSLGKFGYLNLNWSRQVYRGPIPAKNSLGIHYNLNVGNSFWALSWVQN-----A  538
                 G+ LG+++ +    SR   R      +S G+    ++G +  +L+W QN      
Sbjct  499  SW---GRHLGNLSLIG---SRTDWRNRPGHDDSYGLSWGTSIGGGSLSLNWNQNRTLWRN  552

Query  539  NENKNDRILSLSVSIPLG--GHHDTYASYRMTS-SNGSNDHEIGMYGQAFDSRLSWSVRQ  595
              ++++ I SL  S+PL+    ++  AS +MTS S+G++ +++G+ G+AF  +L W VRQ
Sbjct  553  GGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQ  612

Query  596  AEHYGQPNSGHNSGSLRLGWQGSYGNIAGNYYYTPSIRQLSADVSGGAIIHRHGLTLGPQ  655
            + + + P +G N+++L+L+W+G+YG ++G+Y Y+ ++RQ++ +++GG +IH+HG+TLG  
Sbjct  613  SYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQP  672

Query  656  INGTSvlvevpgvggvtttEDRRLKTDFRGYSIVSGLSPYQEHDIVLETADLPPDAEVAK  715
            ++G+  LVE PG +GV       +KTDFRG + V+ LS YQE+ + L+ ++LP DAEV++
Sbjct  673  LQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLDPSQLPDDAEVTQ  732

Query  716  TDTKVLPTEGAIVRASFSPQIGAKALMTITRANGQTIPFGAMASLVNQSANAAIVDEGGK  775
            TD +V+PTEGA+V A F  +IGA+ALMT+ R +G +IPFGA   +  Q ++A +VD +++
Sbjct  733  TDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQDGSADLVDTDSQ  792

Query  776  AYLTGLPETGQLLVQWGKDAGQQCRVDYQLSPAEKGDTGLYMLSGVCH  823
             YLTGL++ G+L V+WG   +QQCRV+Y+L PA+KG +GLY +SG+C+
Sbjct  793  VYLTGLADKGELTVKWG---AQQCRVNYHL-PAHKGIAGLYQMSGLCR  836

49) psaC in NC_006155


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  611 bits (2309),  Expect = 6e-176, Method: Compositional matrix adjust.
 Identities = 382/828 (47%), Positives = 596/828 (72%), Gaps = 25/828 (3%)

Query  9    AQRYSFDPNLLVDGNNNTDTSLFEQGNELPGTYLVDIILNGNKVDSTNVTFHSEKSPSGE  68
            A+ Y+FD+++L D+ +  D SLF+QG + PGTY VD+++NG++VD+ +V F  EK   G 
Sbjct  21   AHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQGT  80

Query  69   PFLQSCLTKEQLSRYGVDVDAYPELSPALKNSQTNPCVNLAAIPQASEEFQFYNMQLVLS  128
            PFL SCLT  QLSRYGV  + YP+L  A K +  + C +L+AIPQA   +++ N QL LS
Sbjct  81   PFLASCLTVSQLSRYGVKTEDYPQLWKAAKTP--DECADLTAIPQAKAVLDINNQQLQLS  138

Query  129  IPQAALRPE--GEVPIERWDDGITAFLLNYMANISETQFRQN-GGYRRSQYIQLYPGLNL  185
            IPQ ALRPE  G  P + WDDGI AFL+NY A  ++T+++ +  G   S  +QL PG+N+
Sbjct  139  IPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRDNSSWVQLQPGINI  198

Query  186  GAWRVRNATNWSQSGDRGGKWQSAYTYATRGIYRLKSRVTLGESYTPGDFFDSIPFRGVM  245
            GAWRVRNAT+W +S++ +GKWQ+AYTYA RG+Y LKSR+TLG+  + G++FDS+PF GVM
Sbjct  199  GAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTGVM  258

Query  246  LGDDPNMQPSNQRDFIPVVRGIARSQAQVEIRQNGYLIYSTVVPPGPFELSDVIPSKSGS  305
            L+ D NM P ++R+F PVVRGIAR+QA+VE++QNGY IY+T V+PGPF L D+  + S++
Sbjct  259  LASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSG  318

Query  306  DLHVRVLESNGASQAFIVPYEVPAIALRKGHLRYNLVAGQYRPANADVETPPVAQATVAY  365
            DLHV V E++G++Q F+VPY+ PAIAL++G L+Y+L+AG+YR++++  + + +AQAT+ Y
Sbjct  319  DLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATLMY  378

Query  366  GLPWNLTAFIGEQWSRHYQATsaglggllgeygalsssITQATSQYHHQQPVKGQAWEVR  425
            GLPWNLTA+ G Q + HYQA+S GLGG LG  G+LS   +++ SQ + +   +G +W +R
Sbjct  379  GLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLR  438

Query  426  YNKTLQASDTSFSLVNSQYSTNGFSTLSDVLQSYRQSGSG--DNRDKIDENSRSRDLRNQ  483
            Y++ L A++T++ L   QY+++G++TLSDVL+SYR++G+     R++++ +SR+  + +Q
Sbjct  439  YSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQPSSRTTLMLSQ  498

Query  484  ISAVIGQSLGKFGYLNLNWSRQVYRGPIPAKNSLGIHYNLNVGNSFWALSWVQN-----A  538
                 G+ LG+++ +    SR   R      +S G+    ++G +  +L+W QN      
Sbjct  499  SW---GRHLGNLSLIG---SRTDWRNRPGHDDSYGLSWGTSIGGGSLSLNWNQNRTLWRN  552

Query  539  NENKNDRILSLSVSIPLG--GHHDTYASYRMTS-SNGSNDHEIGMYGQAFDSRLSWSVRQ  595
              ++++ I SL  S+PL+    ++  AS +MTS S+G++ +++G+ G+AF  +L W VRQ
Sbjct  553  GGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQ  612

Query  596  AEHYGQPNSGHNSGSLRLGWQGSYGNIAGNYYYTPSIRQLSADVSGGAIIHRHGLTLGPQ  655
            + + + P +G N+++L+L+W+G+YG ++G+Y Y+ ++RQ++ +++GG +IH+HG+TLG  
Sbjct  613  SYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQP  672

Query  656  INGTSvlvevpgvggvtttEDRRLKTDFRGYSIVSGLSPYQEHDIVLETADLPPDAEVAK  715
            ++G+  LVE PG +GV       +KTDFRG + V+ LS YQE+ + L+ ++LP DAEV++
Sbjct  673  LQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLDPSQLPDDAEVTQ  732

Query  716  TDTKVLPTEGAIVRASFSPQIGAKALMTITRANGQTIPFGAMASLVNQSANAAIVDEGGK  775
            TD +V+PTEGA+V A F  +IGA+ALMT+ R +G +IPFGA   +  Q ++A +VD +++
Sbjct  733  TDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQDGSADLVDTDSQ  792

Query  776  AYLTGLPETGQLLVQWGKDAGQQCRVDYQLSPAEKGDTGLYMLSGVCH  823
             YLTGL++ G+L V+WG   +QQCRV+Y+L PA+KG +GLY +SG+C+
Sbjct  793  VYLTGLADKGELTVKWG---AQQCRVNYHL-PAHKGIAGLYQMSGLCR  836

50) YPTS_1431 in NC_010634


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  611 bits (2309),  Expect = 6e-176, Method: Compositional matrix adjust.
 Identities = 382/828 (47%), Positives = 596/828 (72%), Gaps = 25/828 (3%)

Query  9    AQRYSFDPNLLVDGNNNTDTSLFEQGNELPGTYLVDIILNGNKVDSTNVTFHSEKSPSGE  68
            A+ Y+FD+++L D+ +  D SLF+QG + PGTY VD+++NG++VD+ +V F  EK   G 
Sbjct  21   AHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQGT  80

Query  69   PFLQSCLTKEQLSRYGVDVDAYPELSPALKNSQTNPCVNLAAIPQASEEFQFYNMQLVLS  128
            PFL SCLT  QLSRYGV  + YP+L  A K +  + C +L+AIPQA   +++ N QL LS
Sbjct  81   PFLASCLTVSQLSRYGVKTEDYPQLWKAAKTP--DECADLTAIPQAKAVLDINNQQLQLS  138

Query  129  IPQAALRPE--GEVPIERWDDGITAFLLNYMANISETQFRQN-GGYRRSQYIQLYPGLNL  185
            IPQ ALRPE  G  P + WDDGI AFL+NY A  ++T+++ +  G   S  +QL PG+N+
Sbjct  139  IPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRDNSSWVQLQPGINI  198

Query  186  GAWRVRNATNWSQSGDRGGKWQSAYTYATRGIYRLKSRVTLGESYTPGDFFDSIPFRGVM  245
            GAWRVRNAT+W +S++ +GKWQ+AYTYA RG+Y LKSR+TLG+  + G++FDS+PF GVM
Sbjct  199  GAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTGVM  258

Query  246  LGDDPNMQPSNQRDFIPVVRGIARSQAQVEIRQNGYLIYSTVVPPGPFELSDVIPSKSGS  305
            L+ D NM P ++R+F PVVRGIAR+QA+VE++QNGY IY+T V+PGPF L D+  + S++
Sbjct  259  LASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSG  318

Query  306  DLHVRVLESNGASQAFIVPYEVPAIALRKGHLRYNLVAGQYRPANADVETPPVAQATVAY  365
            DLHV V E++G++Q F+VPY+ PAIAL++G L+Y+L+AG+YR++++  + + +AQAT+ Y
Sbjct  319  DLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATLMY  378

Query  366  GLPWNLTAFIGEQWSRHYQATsaglggllgeygalsssITQATSQYHHQQPVKGQAWEVR  425
            GLPWNLTA+ G Q + HYQA+S GLGG LG  G+LS   +++ SQ + +   +G +W +R
Sbjct  379  GLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLR  438

Query  426  YNKTLQASDTSFSLVNSQYSTNGFSTLSDVLQSYRQSGSG--DNRDKIDENSRSRDLRNQ  483
            Y++ L A++T++ L   QY+++G++TLSDVL+SYR++G+     R++++ +SR+  + +Q
Sbjct  439  YSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQPSSRTTLMLSQ  498

Query  484  ISAVIGQSLGKFGYLNLNWSRQVYRGPIPAKNSLGIHYNLNVGNSFWALSWVQN-----A  538
                 G+ LG+++ +    SR   R      +S G+    ++G +  +L+W QN      
Sbjct  499  SW---GRHLGNLSLIG---SRTDWRNRPGHDDSYGLSWGTSIGGGSLSLNWNQNRTLWRN  552

Query  539  NENKNDRILSLSVSIPLG--GHHDTYASYRMTS-SNGSNDHEIGMYGQAFDSRLSWSVRQ  595
              ++++ I SL  S+PL+    ++  AS +MTS S+G++ +++G+ G+AF  +L W VRQ
Sbjct  553  GGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQ  612

Query  596  AEHYGQPNSGHNSGSLRLGWQGSYGNIAGNYYYTPSIRQLSADVSGGAIIHRHGLTLGPQ  655
            + + + P +G N+++L+L+W+G+YG ++G+Y Y+ ++RQ++ +++GG +IH+HG+TLG  
Sbjct  613  SYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQP  672

Query  656  INGTSvlvevpgvggvtttEDRRLKTDFRGYSIVSGLSPYQEHDIVLETADLPPDAEVAK  715
            ++G+  LVE PG +GV       +KTDFRG + V+ LS YQE+ + L+ ++LP DAEV++
Sbjct  673  LQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLDPSQLPDDAEVTQ  732

Query  716  TDTKVLPTEGAIVRASFSPQIGAKALMTITRANGQTIPFGAMASLVNQSANAAIVDEGGK  775
            TD +V+PTEGA+V A F  +IGA+ALMT+ R +G +IPFGA   +  Q ++A +VD +++
Sbjct  733  TDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQDGSADLVDTDSQ  792

Query  776  AYLTGLPETGQLLVQWGKDAGQQCRVDYQLSPAEKGDTGLYMLSGVCH  823
             YLTGL++ G+L V+WG   +QQCRV+Y+L PA+KG +GLY +SG+C+
Sbjct  793  VYLTGLADKGELTVKWG---AQQCRVNYHL-PAHKGIAGLYQMSGLCR  836

51) A1122_21617 in NC_017169


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  607 bits (2293),  Expect = 1e-174, Method: Compositional matrix adjust.
 Identities = 361/825 (44%), Positives = 586/825 (72%), Gaps = 26/825 (3%)

Query  21   GRAYTFDSTMLDTNSGESIDVSLFNQGLQLPGNYFVNVFVNGRKVDSGNIDFRLEKH-NG  79
            +++YTFD++ML+ +++ ++D+SLFNQG+Q PG Y V+V VNG++VD+ ++ F+LEK+ +G
Sbjct  21   AHTYTFDASMLG-DAAKGVDMSLFNQGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQG  79

Query  80   KELLWPCLSSLQLTKYGIDIDKYPDLIKSG--TEQCVDLLAIPHSDVQFYFNQQKLSLIV  137
              +L +CL+  QL++YG+  + YP+L K++   ++C DL AIP++   + +N+Q+L L +
Sbjct  80   TPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTAIPQAKAVLDINNQQLQLSI  139

Query  138  PPQALLPRFDGIMPMQLWDDGIPALFMNYNTNMQTRKFREG--GKSLDSYYAQLQPGLNI  195
            P  AL P F GI P +LWDDGIPA++MNY++      ++ +  G+  +S   QLQPG+NI
Sbjct  140  PQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRD-NSSWVQLQPGINI  198

Query  196  GAWRFRSSTSWWKQQG------WQRSYIYAERGLNTIKSRLTLGETYSDSSIFDSIPIKG  249
            GAWR R++TSW  Q++      WQ +Y YAERGL ++KSRLTLG+  S++ IFDS+P+ G
Sbjct  199  GAWRVRNATSW--QRSSQLSGKWQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTG  256

Query  250  IKIASDESMVPYYQWNFAPVVRGIARTQARVEVLRDGYTVSNELVPSGPFELANLPLGGG  309
            + +ASD++MVPY +++FAPVVRGIARTQARVEV ++GYT+ N  V++GPF L +L++ ++
Sbjct  257  VMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDS  316

Query  310  SGELKVIIHESDGTKQVFTVPYDTPAVALRKGYFEYSMMGGEYRPANDLTQTSYVGALGM  369
            SG+L V + E+DG+ Q+F VPY+TPA+AL++GY+ YS+++G YR+++  T+ + ++   +
Sbjct  317  SGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATL  376

Query  370  KYGLPRNLTLYGGLQGSQNYHAAALGIGAMLGDFGAISTDVTQADSQKNKQKKESGQRWR  429
             YGLP+NLT YGG+Q++ +Y+AA+LG+G+ LG  G++S D ++++SQ++ +  + G  WR
Sbjct  377  MYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWR  436

Query  430  VRYNKYL-QSGTSLNIASEEYATEGFNKLADTLNTYCKPNTRNDCRFDYAKPKNKVQFNL  488
            +RY++ L  +GT+L ++  +YA++G+N L+D L++Y     R   + +  +P ++  + L
Sbjct  437  LRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQPSSRTTLML  496

Query  489  SQS-IPGSGTLNFSGYRKNYWRDSRS-TTSFSVGYNHFFRNGMSLTLNLSKTQNINKYGE  546
            SQS     G L++ G R + WR+  +   S++++    +  G SL+LN ++ + + + G 
Sbjct  497  SQSWGRHLGNLSLIGSRTD-WRNRPGHDDSYGLSWGTSI-GGGSLSLNWNQNRTLWRNGG  554

Query  547  KTSELLSNIWLSFPLSRWLGNNSINSNYQMTSDSHGNTTHEVGVYGEAFDRQLYWDVRER  606
               E ++++W+S PLSRW GNN ++++ QMTS SHG  T++VGV GEAF +QL W+VR+ 
Sbjct  555  HRKENITSLWFSMPLSRWTGNN-VSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQS  613

Query  607  FNEKGRKYTSN--ALNLNYRGTYGEISGNYSYDQTQSQLGIGVNGNMVITQYGITAGQKT  664
            +   +    +N  AL+L   G+YG ++G+YSY ++  Q+G+ + G +VI + G+T GQ  
Sbjct  614  YRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQPL  673

Query  665  GDTIALVQAPDISGASVGYWPGMKTDFRGYTNYGYLTPYRENKVEINPVTLPNDAEITNN  724
             +++ALV+AP+ SG +VG WPG+KTDFRG T  G L+ Y+EN V ++P  LP+DAE+T+ 
Sbjct  674  QGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLDPSQLPDDAEVTQT  733

Query  725  IVSVIPTKGAVVLAKFNARIGGRLFLHLKRSDNKPVPFGSIVTIEGQSSSSGIVGDNSGV  784
             V V+PT GAVV AKF++RIG+R ++ LKR D  ++PFG+ V ++GQ +S+++V+ +S V
Sbjct  734  DVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQDGSADLVDTDSQV  793

Query  785  YLTGLPKKSKILVKWGRDKNQSCSSNVVLPEKTDISGAYRLSTTC  829
            YLTGL+ K+ + VKWG    Q C  N  LP   +I+G Y++S  C
Sbjct  794  YLTGLADKGELTVKWG---AQQCRVNYHLPAHKGIAGLYQMSGLC  835

52) YPA_MT0069 in NC_008120


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  607 bits (2293),  Expect = 1e-174, Method: Compositional matrix adjust.
 Identities = 361/825 (44%), Positives = 586/825 (72%), Gaps = 26/825 (3%)

Query  21   GRAYTFDSTMLDTNSGESIDVSLFNQGLQLPGNYFVNVFVNGRKVDSGNIDFRLEKH-NG  79
            +++YTFD++ML+ +++ ++D+SLFNQG+Q PG Y V+V VNG++VD+ ++ F+LEK+ +G
Sbjct  21   AHTYTFDASMLG-DAAKGVDMSLFNQGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQG  79

Query  80   KELLWPCLSSLQLTKYGIDIDKYPDLIKSG--TEQCVDLLAIPHSDVQFYFNQQKLSLIV  137
              +L +CL+  QL++YG+  + YP+L K++   ++C DL AIP++   + +N+Q+L L +
Sbjct  80   TPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTAIPQAKAVLDINNQQLQLSI  139

Query  138  PPQALLPRFDGIMPMQLWDDGIPALFMNYNTNMQTRKFREG--GKSLDSYYAQLQPGLNI  195
            P  AL P F GI P +LWDDGIPA++MNY++      ++ +  G+  +S   QLQPG+NI
Sbjct  140  PQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRD-NSSWVQLQPGINI  198

Query  196  GAWRFRSSTSWWKQQG------WQRSYIYAERGLNTIKSRLTLGETYSDSSIFDSIPIKG  249
            GAWR R++TSW  Q++      WQ +Y YAERGL ++KSRLTLG+  S++ IFDS+P+ G
Sbjct  199  GAWRVRNATSW--QRSSQLSGKWQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTG  256

Query  250  IKIASDESMVPYYQWNFAPVVRGIARTQARVEVLRDGYTVSNELVPSGPFELANLPLGGG  309
            + +ASD++MVPY +++FAPVVRGIARTQARVEV ++GYT+ N  V++GPF L +L++ ++
Sbjct  257  VMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDS  316

Query  310  SGELKVIIHESDGTKQVFTVPYDTPAVALRKGYFEYSMMGGEYRPANDLTQTSYVGALGM  369
            SG+L V + E+DG+ Q+F VPY+TPA+AL++GY+ YS+++G YR+++  T+ + ++   +
Sbjct  317  SGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATL  376

Query  370  KYGLPRNLTLYGGLQGSQNYHAAALGIGAMLGDFGAISTDVTQADSQKNKQKKESGQRWR  429
             YGLP+NLT YGG+Q++ +Y+AA+LG+G+ LG  G++S D ++++SQ++ +  + G  WR
Sbjct  377  MYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWR  436

Query  430  VRYNKYL-QSGTSLNIASEEYATEGFNKLADTLNTYCKPNTRNDCRFDYAKPKNKVQFNL  488
            +RY++ L  +GT+L ++  +YA++G+N L+D L++Y     R   + +  +P ++  + L
Sbjct  437  LRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQPSSRTTLML  496

Query  489  SQS-IPGSGTLNFSGYRKNYWRDSRS-TTSFSVGYNHFFRNGMSLTLNLSKTQNINKYGE  546
            SQS     G L++ G R + WR+  +   S++++    +  G SL+LN ++ + + + G 
Sbjct  497  SQSWGRHLGNLSLIGSRTD-WRNRPGHDDSYGLSWGTSI-GGGSLSLNWNQNRTLWRNGG  554

Query  547  KTSELLSNIWLSFPLSRWLGNNSINSNYQMTSDSHGNTTHEVGVYGEAFDRQLYWDVRER  606
               E ++++W+S PLSRW GNN ++++ QMTS SHG  T++VGV GEAF +QL W+VR+ 
Sbjct  555  HRKENITSLWFSMPLSRWTGNN-VSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQS  613

Query  607  FNEKGRKYTSN--ALNLNYRGTYGEISGNYSYDQTQSQLGIGVNGNMVITQYGITAGQKT  664
            +   +    +N  AL+L   G+YG ++G+YSY ++  Q+G+ + G +VI + G+T GQ  
Sbjct  614  YRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQPL  673

Query  665  GDTIALVQAPDISGASVGYWPGMKTDFRGYTNYGYLTPYRENKVEINPVTLPNDAEITNN  724
             +++ALV+AP+ SG +VG WPG+KTDFRG T  G L+ Y+EN V ++P  LP+DAE+T+ 
Sbjct  674  QGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLDPSQLPDDAEVTQT  733

Query  725  IVSVIPTKGAVVLAKFNARIGGRLFLHLKRSDNKPVPFGSIVTIEGQSSSSGIVGDNSGV  784
             V V+PT GAVV AKF++RIG+R ++ LKR D  ++PFG+ V ++GQ +S+++V+ +S V
Sbjct  734  DVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQDGSADLVDTDSQV  793

Query  785  YLTGLPKKSKILVKWGRDKNQSCSSNVVLPEKTDISGAYRLSTTC  829
            YLTGL+ K+ + VKWG    Q C  N  LP   +I+G Y++S  C
Sbjct  794  YLTGLADKGELTVKWG---AQQCRVNYHLPAHKGIAGLYQMSGLC  835

53) caf1A in NC_017266


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  607 bits (2293),  Expect = 1e-174, Method: Compositional matrix adjust.
 Identities = 361/825 (44%), Positives = 586/825 (72%), Gaps = 26/825 (3%)

Query  21   GRAYTFDSTMLDTNSGESIDVSLFNQGLQLPGNYFVNVFVNGRKVDSGNIDFRLEKH-NG  79
            +++YTFD++ML+ +++ ++D+SLFNQG+Q PG Y V+V VNG++VD+ ++ F+LEK+ +G
Sbjct  21   AHTYTFDASMLG-DAAKGVDMSLFNQGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQG  79

Query  80   KELLWPCLSSLQLTKYGIDIDKYPDLIKSG--TEQCVDLLAIPHSDVQFYFNQQKLSLIV  137
              +L +CL+  QL++YG+  + YP+L K++   ++C DL AIP++   + +N+Q+L L +
Sbjct  80   TPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTAIPQAKAVLDINNQQLQLSI  139

Query  138  PPQALLPRFDGIMPMQLWDDGIPALFMNYNTNMQTRKFREG--GKSLDSYYAQLQPGLNI  195
            P  AL P F GI P +LWDDGIPA++MNY++      ++ +  G+  +S   QLQPG+NI
Sbjct  140  PQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRD-NSSWVQLQPGINI  198

Query  196  GAWRFRSSTSWWKQQG------WQRSYIYAERGLNTIKSRLTLGETYSDSSIFDSIPIKG  249
            GAWR R++TSW  Q++      WQ +Y YAERGL ++KSRLTLG+  S++ IFDS+P+ G
Sbjct  199  GAWRVRNATSW--QRSSQLSGKWQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTG  256

Query  250  IKIASDESMVPYYQWNFAPVVRGIARTQARVEVLRDGYTVSNELVPSGPFELANLPLGGG  309
            + +ASD++MVPY +++FAPVVRGIARTQARVEV ++GYT+ N  V++GPF L +L++ ++
Sbjct  257  VMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDS  316

Query  310  SGELKVIIHESDGTKQVFTVPYDTPAVALRKGYFEYSMMGGEYRPANDLTQTSYVGALGM  369
            SG+L V + E+DG+ Q+F VPY+TPA+AL++GY+ YS+++G YR+++  T+ + ++   +
Sbjct  317  SGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATL  376

Query  370  KYGLPRNLTLYGGLQGSQNYHAAALGIGAMLGDFGAISTDVTQADSQKNKQKKESGQRWR  429
             YGLP+NLT YGG+Q++ +Y+AA+LG+G+ LG  G++S D ++++SQ++ +  + G  WR
Sbjct  377  MYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWR  436

Query  430  VRYNKYL-QSGTSLNIASEEYATEGFNKLADTLNTYCKPNTRNDCRFDYAKPKNKVQFNL  488
            +RY++ L  +GT+L ++  +YA++G+N L+D L++Y     R   + +  +P ++  + L
Sbjct  437  LRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQPSSRTTLML  496

Query  489  SQS-IPGSGTLNFSGYRKNYWRDSRS-TTSFSVGYNHFFRNGMSLTLNLSKTQNINKYGE  546
            SQS     G L++ G R + WR+  +   S++++    +  G SL+LN ++ + + + G 
Sbjct  497  SQSWGRHLGNLSLIGSRTD-WRNRPGHDDSYGLSWGTSI-GGGSLSLNWNQNRTLWRNGG  554

Query  547  KTSELLSNIWLSFPLSRWLGNNSINSNYQMTSDSHGNTTHEVGVYGEAFDRQLYWDVRER  606
               E ++++W+S PLSRW GNN ++++ QMTS SHG  T++VGV GEAF +QL W+VR+ 
Sbjct  555  HRKENITSLWFSMPLSRWTGNN-VSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQS  613

Query  607  FNEKGRKYTSN--ALNLNYRGTYGEISGNYSYDQTQSQLGIGVNGNMVITQYGITAGQKT  664
            +   +    +N  AL+L   G+YG ++G+YSY ++  Q+G+ + G +VI + G+T GQ  
Sbjct  614  YRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQPL  673

Query  665  GDTIALVQAPDISGASVGYWPGMKTDFRGYTNYGYLTPYRENKVEINPVTLPNDAEITNN  724
             +++ALV+AP+ SG +VG WPG+KTDFRG T  G L+ Y+EN V ++P  LP+DAE+T+ 
Sbjct  674  QGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLDPSQLPDDAEVTQT  733

Query  725  IVSVIPTKGAVVLAKFNARIGGRLFLHLKRSDNKPVPFGSIVTIEGQSSSSGIVGDNSGV  784
             V V+PT GAVV AKF++RIG+R ++ LKR D  ++PFG+ V ++GQ +S+++V+ +S V
Sbjct  734  DVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQDGSADLVDTDSQV  793

Query  785  YLTGLPKKSKILVKWGRDKNQSCSSNVVLPEKTDISGAYRLSTTC  829
            YLTGL+ K+ + VKWG    Q C  N  LP   +I+G Y++S  C
Sbjct  794  YLTGLADKGELTVKWG---AQQCRVNYHLPAHKGIAGLYQMSGLC  835

54) caf1A in NC_005815


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  607 bits (2293),  Expect = 1e-174, Method: Compositional matrix adjust.
 Identities = 361/825 (44%), Positives = 586/825 (72%), Gaps = 26/825 (3%)

Query  21   GRAYTFDSTMLDTNSGESIDVSLFNQGLQLPGNYFVNVFVNGRKVDSGNIDFRLEKH-NG  79
            +++YTFD++ML+ +++ ++D+SLFNQG+Q PG Y V+V VNG++VD+ ++ F+LEK+ +G
Sbjct  21   AHTYTFDASMLG-DAAKGVDMSLFNQGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQG  79

Query  80   KELLWPCLSSLQLTKYGIDIDKYPDLIKSG--TEQCVDLLAIPHSDVQFYFNQQKLSLIV  137
              +L +CL+  QL++YG+  + YP+L K++   ++C DL AIP++   + +N+Q+L L +
Sbjct  80   TPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTAIPQAKAVLDINNQQLQLSI  139

Query  138  PPQALLPRFDGIMPMQLWDDGIPALFMNYNTNMQTRKFREG--GKSLDSYYAQLQPGLNI  195
            P  AL P F GI P +LWDDGIPA++MNY++      ++ +  G+  +S   QLQPG+NI
Sbjct  140  PQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRD-NSSWVQLQPGINI  198

Query  196  GAWRFRSSTSWWKQQG------WQRSYIYAERGLNTIKSRLTLGETYSDSSIFDSIPIKG  249
            GAWR R++TSW  Q++      WQ +Y YAERGL ++KSRLTLG+  S++ IFDS+P+ G
Sbjct  199  GAWRVRNATSW--QRSSQLSGKWQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTG  256

Query  250  IKIASDESMVPYYQWNFAPVVRGIARTQARVEVLRDGYTVSNELVPSGPFELANLPLGGG  309
            + +ASD++MVPY +++FAPVVRGIARTQARVEV ++GYT+ N  V++GPF L +L++ ++
Sbjct  257  VMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDS  316

Query  310  SGELKVIIHESDGTKQVFTVPYDTPAVALRKGYFEYSMMGGEYRPANDLTQTSYVGALGM  369
            SG+L V + E+DG+ Q+F VPY+TPA+AL++GY+ YS+++G YR+++  T+ + ++   +
Sbjct  317  SGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATL  376

Query  370  KYGLPRNLTLYGGLQGSQNYHAAALGIGAMLGDFGAISTDVTQADSQKNKQKKESGQRWR  429
             YGLP+NLT YGG+Q++ +Y+AA+LG+G+ LG  G++S D ++++SQ++ +  + G  WR
Sbjct  377  MYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWR  436

Query  430  VRYNKYL-QSGTSLNIASEEYATEGFNKLADTLNTYCKPNTRNDCRFDYAKPKNKVQFNL  488
            +RY++ L  +GT+L ++  +YA++G+N L+D L++Y     R   + +  +P ++  + L
Sbjct  437  LRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQPSSRTTLML  496

Query  489  SQS-IPGSGTLNFSGYRKNYWRDSRS-TTSFSVGYNHFFRNGMSLTLNLSKTQNINKYGE  546
            SQS     G L++ G R + WR+  +   S++++    +  G SL+LN ++ + + + G 
Sbjct  497  SQSWGRHLGNLSLIGSRTD-WRNRPGHDDSYGLSWGTSI-GGGSLSLNWNQNRTLWRNGG  554

Query  547  KTSELLSNIWLSFPLSRWLGNNSINSNYQMTSDSHGNTTHEVGVYGEAFDRQLYWDVRER  606
               E ++++W+S PLSRW GNN ++++ QMTS SHG  T++VGV GEAF +QL W+VR+ 
Sbjct  555  HRKENITSLWFSMPLSRWTGNN-VSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQS  613

Query  607  FNEKGRKYTSN--ALNLNYRGTYGEISGNYSYDQTQSQLGIGVNGNMVITQYGITAGQKT  664
            +   +    +N  AL+L   G+YG ++G+YSY ++  Q+G+ + G +VI + G+T GQ  
Sbjct  614  YRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQPL  673

Query  665  GDTIALVQAPDISGASVGYWPGMKTDFRGYTNYGYLTPYRENKVEINPVTLPNDAEITNN  724
             +++ALV+AP+ SG +VG WPG+KTDFRG T  G L+ Y+EN V ++P  LP+DAE+T+ 
Sbjct  674  QGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLDPSQLPDDAEVTQT  733

Query  725  IVSVIPTKGAVVLAKFNARIGGRLFLHLKRSDNKPVPFGSIVTIEGQSSSSGIVGDNSGV  784
             V V+PT GAVV AKF++RIG+R ++ LKR D  ++PFG+ V ++GQ +S+++V+ +S V
Sbjct  734  DVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQDGSADLVDTDSQV  793

Query  785  YLTGLPKKSKILVKWGRDKNQSCSSNVVLPEKTDISGAYRLSTTC  829
            YLTGL+ K+ + VKWG    Q C  N  LP   +I+G Y++S  C
Sbjct  794  YLTGLADKGELTVKWG---AQQCRVNYHLPAHKGIAGLYQMSGLC  835

55) caf1A in NC_003134


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  607 bits (2293),  Expect = 1e-174, Method: Compositional matrix adjust.
 Identities = 361/825 (44%), Positives = 586/825 (72%), Gaps = 26/825 (3%)

Query  21   GRAYTFDSTMLDTNSGESIDVSLFNQGLQLPGNYFVNVFVNGRKVDSGNIDFRLEKH-NG  79
            +++YTFD++ML+ +++ ++D+SLFNQG+Q PG Y V+V VNG++VD+ ++ F+LEK+ +G
Sbjct  21   AHTYTFDASMLG-DAAKGVDMSLFNQGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQG  79

Query  80   KELLWPCLSSLQLTKYGIDIDKYPDLIKSG--TEQCVDLLAIPHSDVQFYFNQQKLSLIV  137
              +L +CL+  QL++YG+  + YP+L K++   ++C DL AIP++   + +N+Q+L L +
Sbjct  80   TPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTAIPQAKAVLDINNQQLQLSI  139

Query  138  PPQALLPRFDGIMPMQLWDDGIPALFMNYNTNMQTRKFREG--GKSLDSYYAQLQPGLNI  195
            P  AL P F GI P +LWDDGIPA++MNY++      ++ +  G+  +S   QLQPG+NI
Sbjct  140  PQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRD-NSSWVQLQPGINI  198

Query  196  GAWRFRSSTSWWKQQG------WQRSYIYAERGLNTIKSRLTLGETYSDSSIFDSIPIKG  249
            GAWR R++TSW  Q++      WQ +Y YAERGL ++KSRLTLG+  S++ IFDS+P+ G
Sbjct  199  GAWRVRNATSW--QRSSQLSGKWQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTG  256

Query  250  IKIASDESMVPYYQWNFAPVVRGIARTQARVEVLRDGYTVSNELVPSGPFELANLPLGGG  309
            + +ASD++MVPY +++FAPVVRGIARTQARVEV ++GYT+ N  V++GPF L +L++ ++
Sbjct  257  VMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDS  316

Query  310  SGELKVIIHESDGTKQVFTVPYDTPAVALRKGYFEYSMMGGEYRPANDLTQTSYVGALGM  369
            SG+L V + E+DG+ Q+F VPY+TPA+AL++GY+ YS+++G YR+++  T+ + ++   +
Sbjct  317  SGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATL  376

Query  370  KYGLPRNLTLYGGLQGSQNYHAAALGIGAMLGDFGAISTDVTQADSQKNKQKKESGQRWR  429
             YGLP+NLT YGG+Q++ +Y+AA+LG+G+ LG  G++S D ++++SQ++ +  + G  WR
Sbjct  377  MYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWR  436

Query  430  VRYNKYL-QSGTSLNIASEEYATEGFNKLADTLNTYCKPNTRNDCRFDYAKPKNKVQFNL  488
            +RY++ L  +GT+L ++  +YA++G+N L+D L++Y     R   + +  +P ++  + L
Sbjct  437  LRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQPSSRTTLML  496

Query  489  SQS-IPGSGTLNFSGYRKNYWRDSRS-TTSFSVGYNHFFRNGMSLTLNLSKTQNINKYGE  546
            SQS     G L++ G R + WR+  +   S++++    +  G SL+LN ++ + + + G 
Sbjct  497  SQSWGRHLGNLSLIGSRTD-WRNRPGHDDSYGLSWGTSI-GGGSLSLNWNQNRTLWRNGG  554

Query  547  KTSELLSNIWLSFPLSRWLGNNSINSNYQMTSDSHGNTTHEVGVYGEAFDRQLYWDVRER  606
               E ++++W+S PLSRW GNN ++++ QMTS SHG  T++VGV GEAF +QL W+VR+ 
Sbjct  555  HRKENITSLWFSMPLSRWTGNN-VSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQS  613

Query  607  FNEKGRKYTSN--ALNLNYRGTYGEISGNYSYDQTQSQLGIGVNGNMVITQYGITAGQKT  664
            +   +    +N  AL+L   G+YG ++G+YSY ++  Q+G+ + G +VI + G+T GQ  
Sbjct  614  YRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQPL  673

Query  665  GDTIALVQAPDISGASVGYWPGMKTDFRGYTNYGYLTPYRENKVEINPVTLPNDAEITNN  724
             +++ALV+AP+ SG +VG WPG+KTDFRG T  G L+ Y+EN V ++P  LP+DAE+T+ 
Sbjct  674  QGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLDPSQLPDDAEVTQT  733

Query  725  IVSVIPTKGAVVLAKFNARIGGRLFLHLKRSDNKPVPFGSIVTIEGQSSSSGIVGDNSGV  784
             V V+PT GAVV AKF++RIG+R ++ LKR D  ++PFG+ V ++GQ +S+++V+ +S V
Sbjct  734  DVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQDGSADLVDTDSQV  793

Query  785  YLTGLPKKSKILVKWGRDKNQSCSSNVVLPEKTDISGAYRLSTTC  829
            YLTGL+ K+ + VKWG    Q C  N  LP   +I+G Y++S  C
Sbjct  794  YLTGLADKGELTVKWG---AQQCRVNYHLPAHKGIAGLYQMSGLC  835

56) caf1A in NC_017158


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  607 bits (2293),  Expect = 1e-174, Method: Compositional matrix adjust.
 Identities = 361/825 (44%), Positives = 586/825 (72%), Gaps = 26/825 (3%)

Query  21   GRAYTFDSTMLDTNSGESIDVSLFNQGLQLPGNYFVNVFVNGRKVDSGNIDFRLEKH-NG  79
            +++YTFD++ML+ +++ ++D+SLFNQG+Q PG Y V+V VNG++VD+ ++ F+LEK+ +G
Sbjct  21   AHTYTFDASMLG-DAAKGVDMSLFNQGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQG  79

Query  80   KELLWPCLSSLQLTKYGIDIDKYPDLIKSG--TEQCVDLLAIPHSDVQFYFNQQKLSLIV  137
              +L +CL+  QL++YG+  + YP+L K++   ++C DL AIP++   + +N+Q+L L +
Sbjct  80   TPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTAIPQAKAVLDINNQQLQLSI  139

Query  138  PPQALLPRFDGIMPMQLWDDGIPALFMNYNTNMQTRKFREG--GKSLDSYYAQLQPGLNI  195
            P  AL P F GI P +LWDDGIPA++MNY++      ++ +  G+  +S   QLQPG+NI
Sbjct  140  PQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRD-NSSWVQLQPGINI  198

Query  196  GAWRFRSSTSWWKQQG------WQRSYIYAERGLNTIKSRLTLGETYSDSSIFDSIPIKG  249
            GAWR R++TSW  Q++      WQ +Y YAERGL ++KSRLTLG+  S++ IFDS+P+ G
Sbjct  199  GAWRVRNATSW--QRSSQLSGKWQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTG  256

Query  250  IKIASDESMVPYYQWNFAPVVRGIARTQARVEVLRDGYTVSNELVPSGPFELANLPLGGG  309
            + +ASD++MVPY +++FAPVVRGIARTQARVEV ++GYT+ N  V++GPF L +L++ ++
Sbjct  257  VMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDS  316

Query  310  SGELKVIIHESDGTKQVFTVPYDTPAVALRKGYFEYSMMGGEYRPANDLTQTSYVGALGM  369
            SG+L V + E+DG+ Q+F VPY+TPA+AL++GY+ YS+++G YR+++  T+ + ++   +
Sbjct  317  SGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATL  376

Query  370  KYGLPRNLTLYGGLQGSQNYHAAALGIGAMLGDFGAISTDVTQADSQKNKQKKESGQRWR  429
             YGLP+NLT YGG+Q++ +Y+AA+LG+G+ LG  G++S D ++++SQ++ +  + G  WR
Sbjct  377  MYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWR  436

Query  430  VRYNKYL-QSGTSLNIASEEYATEGFNKLADTLNTYCKPNTRNDCRFDYAKPKNKVQFNL  488
            +RY++ L  +GT+L ++  +YA++G+N L+D L++Y     R   + +  +P ++  + L
Sbjct  437  LRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQPSSRTTLML  496

Query  489  SQS-IPGSGTLNFSGYRKNYWRDSRS-TTSFSVGYNHFFRNGMSLTLNLSKTQNINKYGE  546
            SQS     G L++ G R + WR+  +   S++++    +  G SL+LN ++ + + + G 
Sbjct  497  SQSWGRHLGNLSLIGSRTD-WRNRPGHDDSYGLSWGTSI-GGGSLSLNWNQNRTLWRNGG  554

Query  547  KTSELLSNIWLSFPLSRWLGNNSINSNYQMTSDSHGNTTHEVGVYGEAFDRQLYWDVRER  606
               E ++++W+S PLSRW GNN ++++ QMTS SHG  T++VGV GEAF +QL W+VR+ 
Sbjct  555  HRKENITSLWFSMPLSRWTGNN-VSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQS  613

Query  607  FNEKGRKYTSN--ALNLNYRGTYGEISGNYSYDQTQSQLGIGVNGNMVITQYGITAGQKT  664
            +   +    +N  AL+L   G+YG ++G+YSY ++  Q+G+ + G +VI + G+T GQ  
Sbjct  614  YRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQPL  673

Query  665  GDTIALVQAPDISGASVGYWPGMKTDFRGYTNYGYLTPYRENKVEINPVTLPNDAEITNN  724
             +++ALV+AP+ SG +VG WPG+KTDFRG T  G L+ Y+EN V ++P  LP+DAE+T+ 
Sbjct  674  QGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLDPSQLPDDAEVTQT  733

Query  725  IVSVIPTKGAVVLAKFNARIGGRLFLHLKRSDNKPVPFGSIVTIEGQSSSSGIVGDNSGV  784
             V V+PT GAVV AKF++RIG+R ++ LKR D  ++PFG+ V ++GQ +S+++V+ +S V
Sbjct  734  DVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQDGSADLVDTDSQV  793

Query  785  YLTGLPKKSKILVKWGRDKNQSCSSNVVLPEKTDISGAYRLSTTC  829
            YLTGL+ K+ + VKWG    Q C  N  LP   +I+G Y++S  C
Sbjct  794  YLTGLADKGELTVKWG---AQQCRVNYHLPAHKGIAGLYQMSGLC  835

57) Y1099 in NC_004838


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  607 bits (2293),  Expect = 1e-174, Method: Compositional matrix adjust.
 Identities = 361/825 (44%), Positives = 586/825 (72%), Gaps = 26/825 (3%)

Query  21   GRAYTFDSTMLDTNSGESIDVSLFNQGLQLPGNYFVNVFVNGRKVDSGNIDFRLEKH-NG  79
            +++YTFD++ML+ +++ ++D+SLFNQG+Q PG Y V+V VNG++VD+ ++ F+LEK+ +G
Sbjct  21   AHTYTFDASMLG-DAAKGVDMSLFNQGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQG  79

Query  80   KELLWPCLSSLQLTKYGIDIDKYPDLIKSG--TEQCVDLLAIPHSDVQFYFNQQKLSLIV  137
              +L +CL+  QL++YG+  + YP+L K++   ++C DL AIP++   + +N+Q+L L +
Sbjct  80   TPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTAIPQAKAVLDINNQQLQLSI  139

Query  138  PPQALLPRFDGIMPMQLWDDGIPALFMNYNTNMQTRKFREG--GKSLDSYYAQLQPGLNI  195
            P  AL P F GI P +LWDDGIPA++MNY++      ++ +  G+  +S   QLQPG+NI
Sbjct  140  PQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRD-NSSWVQLQPGINI  198

Query  196  GAWRFRSSTSWWKQQG------WQRSYIYAERGLNTIKSRLTLGETYSDSSIFDSIPIKG  249
            GAWR R++TSW  Q++      WQ +Y YAERGL ++KSRLTLG+  S++ IFDS+P+ G
Sbjct  199  GAWRVRNATSW--QRSSQLSGKWQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTG  256

Query  250  IKIASDESMVPYYQWNFAPVVRGIARTQARVEVLRDGYTVSNELVPSGPFELANLPLGGG  309
            + +ASD++MVPY +++FAPVVRGIARTQARVEV ++GYT+ N  V++GPF L +L++ ++
Sbjct  257  VMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDS  316

Query  310  SGELKVIIHESDGTKQVFTVPYDTPAVALRKGYFEYSMMGGEYRPANDLTQTSYVGALGM  369
            SG+L V + E+DG+ Q+F VPY+TPA+AL++GY+ YS+++G YR+++  T+ + ++   +
Sbjct  317  SGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATL  376

Query  370  KYGLPRNLTLYGGLQGSQNYHAAALGIGAMLGDFGAISTDVTQADSQKNKQKKESGQRWR  429
             YGLP+NLT YGG+Q++ +Y+AA+LG+G+ LG  G++S D ++++SQ++ +  + G  WR
Sbjct  377  MYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWR  436

Query  430  VRYNKYL-QSGTSLNIASEEYATEGFNKLADTLNTYCKPNTRNDCRFDYAKPKNKVQFNL  488
            +RY++ L  +GT+L ++  +YA++G+N L+D L++Y     R   + +  +P ++  + L
Sbjct  437  LRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQPSSRTTLML  496

Query  489  SQS-IPGSGTLNFSGYRKNYWRDSRS-TTSFSVGYNHFFRNGMSLTLNLSKTQNINKYGE  546
            SQS     G L++ G R + WR+  +   S++++    +  G SL+LN ++ + + + G 
Sbjct  497  SQSWGRHLGNLSLIGSRTD-WRNRPGHDDSYGLSWGTSI-GGGSLSLNWNQNRTLWRNGG  554

Query  547  KTSELLSNIWLSFPLSRWLGNNSINSNYQMTSDSHGNTTHEVGVYGEAFDRQLYWDVRER  606
               E ++++W+S PLSRW GNN ++++ QMTS SHG  T++VGV GEAF +QL W+VR+ 
Sbjct  555  HRKENITSLWFSMPLSRWTGNN-VSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQS  613

Query  607  FNEKGRKYTSN--ALNLNYRGTYGEISGNYSYDQTQSQLGIGVNGNMVITQYGITAGQKT  664
            +   +    +N  AL+L   G+YG ++G+YSY ++  Q+G+ + G +VI + G+T GQ  
Sbjct  614  YRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQPL  673

Query  665  GDTIALVQAPDISGASVGYWPGMKTDFRGYTNYGYLTPYRENKVEINPVTLPNDAEITNN  724
             +++ALV+AP+ SG +VG WPG+KTDFRG T  G L+ Y+EN V ++P  LP+DAE+T+ 
Sbjct  674  QGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLDPSQLPDDAEVTQT  733

Query  725  IVSVIPTKGAVVLAKFNARIGGRLFLHLKRSDNKPVPFGSIVTIEGQSSSSGIVGDNSGV  784
             V V+PT GAVV AKF++RIG+R ++ LKR D  ++PFG+ V ++GQ +S+++V+ +S V
Sbjct  734  DVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQDGSADLVDTDSQV  793

Query  785  YLTGLPKKSKILVKWGRDKNQSCSSNVVLPEKTDISGAYRLSTTC  829
            YLTGL+ K+ + VKWG    Q C  N  LP   +I+G Y++S  C
Sbjct  794  YLTGLADKGELTVKWG---AQQCRVNYHLPAHKGIAGLYQMSGLC  835

58) YPN_MT0065 in NC_008118


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  607 bits (2293),  Expect = 1e-174, Method: Compositional matrix adjust.
 Identities = 361/825 (44%), Positives = 586/825 (72%), Gaps = 26/825 (3%)

Query  21   GRAYTFDSTMLDTNSGESIDVSLFNQGLQLPGNYFVNVFVNGRKVDSGNIDFRLEKH-NG  79
            +++YTFD++ML+ +++ ++D+SLFNQG+Q PG Y V+V VNG++VD+ ++ F+LEK+ +G
Sbjct  21   AHTYTFDASMLG-DAAKGVDMSLFNQGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQG  79

Query  80   KELLWPCLSSLQLTKYGIDIDKYPDLIKSG--TEQCVDLLAIPHSDVQFYFNQQKLSLIV  137
              +L +CL+  QL++YG+  + YP+L K++   ++C DL AIP++   + +N+Q+L L +
Sbjct  80   TPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTAIPQAKAVLDINNQQLQLSI  139

Query  138  PPQALLPRFDGIMPMQLWDDGIPALFMNYNTNMQTRKFREG--GKSLDSYYAQLQPGLNI  195
            P  AL P F GI P +LWDDGIPA++MNY++      ++ +  G+  +S   QLQPG+NI
Sbjct  140  PQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRD-NSSWVQLQPGINI  198

Query  196  GAWRFRSSTSWWKQQG------WQRSYIYAERGLNTIKSRLTLGETYSDSSIFDSIPIKG  249
            GAWR R++TSW  Q++      WQ +Y YAERGL ++KSRLTLG+  S++ IFDS+P+ G
Sbjct  199  GAWRVRNATSW--QRSSQLSGKWQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTG  256

Query  250  IKIASDESMVPYYQWNFAPVVRGIARTQARVEVLRDGYTVSNELVPSGPFELANLPLGGG  309
            + +ASD++MVPY +++FAPVVRGIARTQARVEV ++GYT+ N  V++GPF L +L++ ++
Sbjct  257  VMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDS  316

Query  310  SGELKVIIHESDGTKQVFTVPYDTPAVALRKGYFEYSMMGGEYRPANDLTQTSYVGALGM  369
            SG+L V + E+DG+ Q+F VPY+TPA+AL++GY+ YS+++G YR+++  T+ + ++   +
Sbjct  317  SGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATL  376

Query  370  KYGLPRNLTLYGGLQGSQNYHAAALGIGAMLGDFGAISTDVTQADSQKNKQKKESGQRWR  429
             YGLP+NLT YGG+Q++ +Y+AA+LG+G+ LG  G++S D ++++SQ++ +  + G  WR
Sbjct  377  MYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWR  436

Query  430  VRYNKYL-QSGTSLNIASEEYATEGFNKLADTLNTYCKPNTRNDCRFDYAKPKNKVQFNL  488
            +RY++ L  +GT+L ++  +YA++G+N L+D L++Y     R   + +  +P ++  + L
Sbjct  437  LRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQPSSRTTLML  496

Query  489  SQS-IPGSGTLNFSGYRKNYWRDSRS-TTSFSVGYNHFFRNGMSLTLNLSKTQNINKYGE  546
            SQS     G L++ G R + WR+  +   S++++    +  G SL+LN ++ + + + G 
Sbjct  497  SQSWGRHLGNLSLIGSRTD-WRNRPGHDDSYGLSWGTSI-GGGSLSLNWNQNRTLWRNGG  554

Query  547  KTSELLSNIWLSFPLSRWLGNNSINSNYQMTSDSHGNTTHEVGVYGEAFDRQLYWDVRER  606
               E ++++W+S PLSRW GNN ++++ QMTS SHG  T++VGV GEAF +QL W+VR+ 
Sbjct  555  HRKENITSLWFSMPLSRWTGNN-VSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQS  613

Query  607  FNEKGRKYTSN--ALNLNYRGTYGEISGNYSYDQTQSQLGIGVNGNMVITQYGITAGQKT  664
            +   +    +N  AL+L   G+YG ++G+YSY ++  Q+G+ + G +VI + G+T GQ  
Sbjct  614  YRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQPL  673

Query  665  GDTIALVQAPDISGASVGYWPGMKTDFRGYTNYGYLTPYRENKVEINPVTLPNDAEITNN  724
             +++ALV+AP+ SG +VG WPG+KTDFRG T  G L+ Y+EN V ++P  LP+DAE+T+ 
Sbjct  674  QGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLDPSQLPDDAEVTQT  733

Query  725  IVSVIPTKGAVVLAKFNARIGGRLFLHLKRSDNKPVPFGSIVTIEGQSSSSGIVGDNSGV  784
             V V+PT GAVV AKF++RIG+R ++ LKR D  ++PFG+ V ++GQ +S+++V+ +S V
Sbjct  734  DVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQDGSADLVDTDSQV  793

Query  785  YLTGLPKKSKILVKWGRDKNQSCSSNVVLPEKTDISGAYRLSTTC  829
            YLTGL+ K+ + VKWG    Q C  N  LP   +I+G Y++S  C
Sbjct  794  YLTGLADKGELTVKWG---AQQCRVNYHLPAHKGIAGLYQMSGLC  835

59) YPDSF_4097 in NC_009378


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  607 bits (2293),  Expect = 1e-174, Method: Compositional matrix adjust.
 Identities = 361/825 (44%), Positives = 586/825 (72%), Gaps = 26/825 (3%)

Query  21   GRAYTFDSTMLDTNSGESIDVSLFNQGLQLPGNYFVNVFVNGRKVDSGNIDFRLEKH-NG  79
            +++YTFD++ML+ +++ ++D+SLFNQG+Q PG Y V+V VNG++VD+ ++ F+LEK+ +G
Sbjct  21   AHTYTFDASMLG-DAAKGVDMSLFNQGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQG  79

Query  80   KELLWPCLSSLQLTKYGIDIDKYPDLIKSG--TEQCVDLLAIPHSDVQFYFNQQKLSLIV  137
              +L +CL+  QL++YG+  + YP+L K++   ++C DL AIP++   + +N+Q+L L +
Sbjct  80   TPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTAIPQAKAVLDINNQQLQLSI  139

Query  138  PPQALLPRFDGIMPMQLWDDGIPALFMNYNTNMQTRKFREG--GKSLDSYYAQLQPGLNI  195
            P  AL P F GI P +LWDDGIPA++MNY++      ++ +  G+  +S   QLQPG+NI
Sbjct  140  PQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRD-NSSWVQLQPGINI  198

Query  196  GAWRFRSSTSWWKQQG------WQRSYIYAERGLNTIKSRLTLGETYSDSSIFDSIPIKG  249
            GAWR R++TSW  Q++      WQ +Y YAERGL ++KSRLTLG+  S++ IFDS+P+ G
Sbjct  199  GAWRVRNATSW--QRSSQLSGKWQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTG  256

Query  250  IKIASDESMVPYYQWNFAPVVRGIARTQARVEVLRDGYTVSNELVPSGPFELANLPLGGG  309
            + +ASD++MVPY +++FAPVVRGIARTQARVEV ++GYT+ N  V++GPF L +L++ ++
Sbjct  257  VMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDS  316

Query  310  SGELKVIIHESDGTKQVFTVPYDTPAVALRKGYFEYSMMGGEYRPANDLTQTSYVGALGM  369
            SG+L V + E+DG+ Q+F VPY+TPA+AL++GY+ YS+++G YR+++  T+ + ++   +
Sbjct  317  SGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATL  376

Query  370  KYGLPRNLTLYGGLQGSQNYHAAALGIGAMLGDFGAISTDVTQADSQKNKQKKESGQRWR  429
             YGLP+NLT YGG+Q++ +Y+AA+LG+G+ LG  G++S D ++++SQ++ +  + G  WR
Sbjct  377  MYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWR  436

Query  430  VRYNKYL-QSGTSLNIASEEYATEGFNKLADTLNTYCKPNTRNDCRFDYAKPKNKVQFNL  488
            +RY++ L  +GT+L ++  +YA++G+N L+D L++Y     R   + +  +P ++  + L
Sbjct  437  LRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQPSSRTTLML  496

Query  489  SQS-IPGSGTLNFSGYRKNYWRDSRS-TTSFSVGYNHFFRNGMSLTLNLSKTQNINKYGE  546
            SQS     G L++ G R + WR+  +   S++++    +  G SL+LN ++ + + + G 
Sbjct  497  SQSWGRHLGNLSLIGSRTD-WRNRPGHDDSYGLSWGTSI-GGGSLSLNWNQNRTLWRNGG  554

Query  547  KTSELLSNIWLSFPLSRWLGNNSINSNYQMTSDSHGNTTHEVGVYGEAFDRQLYWDVRER  606
               E ++++W+S PLSRW GNN ++++ QMTS SHG  T++VGV GEAF +QL W+VR+ 
Sbjct  555  HRKENITSLWFSMPLSRWTGNN-VSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQS  613

Query  607  FNEKGRKYTSN--ALNLNYRGTYGEISGNYSYDQTQSQLGIGVNGNMVITQYGITAGQKT  664
            +   +    +N  AL+L   G+YG ++G+YSY ++  Q+G+ + G +VI + G+T GQ  
Sbjct  614  YRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQPL  673

Query  665  GDTIALVQAPDISGASVGYWPGMKTDFRGYTNYGYLTPYRENKVEINPVTLPNDAEITNN  724
             +++ALV+AP+ SG +VG WPG+KTDFRG T  G L+ Y+EN V ++P  LP+DAE+T+ 
Sbjct  674  QGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLDPSQLPDDAEVTQT  733

Query  725  IVSVIPTKGAVVLAKFNARIGGRLFLHLKRSDNKPVPFGSIVTIEGQSSSSGIVGDNSGV  784
             V V+PT GAVV AKF++RIG+R ++ LKR D  ++PFG+ V ++GQ +S+++V+ +S V
Sbjct  734  DVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQDGSADLVDTDSQV  793

Query  785  YLTGLPKKSKILVKWGRDKNQSCSSNVVLPEKTDISGAYRLSTTC  829
            YLTGL+ K+ + VKWG    Q C  N  LP   +I+G Y++S  C
Sbjct  794  YLTGLADKGELTVKWG---AQQCRVNYHLPAHKGIAGLYQMSGLC  835

60) ECSE_P2-0002 in NC_011413


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  601 bits (2270),  Expect = 7e-173, Method: Compositional matrix adjust.
 Identities = 360/825 (44%), Positives = 591/825 (72%), Gaps = 24/825 (2%)

Query  21   GRTYTFDPslvessggdsvdvslFNQGLQLPGEYFVSIFVNGEKVGSDNINFRIENH-NG  79
            ++TYTFD+S++  ++ +      FNQG+Q PG Y V + VNG +V++ ++ F++E++ +G
Sbjct  21   AHTYTFDASMLGDAAKGVDMSL-FNQGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQG  79

Query  80   EDTLSPCLNADQLTKYGIDIHKYSDLFNAG--PEQCANLWAIPQADIQFDFNQqklslll  137
               L++CL   QL++YG+  + Y++L +A+  P++CA+L AIPQA   +D+N+Q+L L +
Sbjct  80   TPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTAIPQAKAVLDINNQQLQLSI  139

Query  138  ptqallpklNGIAPEQLWDDGIPALFMNYQTNMQQREYQGAYKSHDESYYAQLQPGLNIG  197
            P  AL P ++GIAPE+LWDDGIPA++MNY +   Q +Y+    ++D+S   QLQPG+NIG
Sbjct  140  PQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRDNSSWVQLQPGINIG  199

Query  198  PWRFRSAASWQKEQG----WQRSYIYAERGLNTIKGRLTLGESYSDGSIFDSIPFTGGKL  253
            +WR R+A+SWQ+       WQ +Y YAERGL ++K+RLTLG+  S+G IFDS+PFTG  L
Sbjct  200  AWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTGVML  259

Query  254  ASDETMLPYDQWSFSPVIRGVARTQARVEVQQNGYTVSNDLIPSGPFELTNLPLGGGSGD  313
            ASD+ M+PY ++ F+PV+RG+ARTQARVEV+QNGYT+ N  +++GPF L +L++ ++SGD
Sbjct  260  ASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSGD  319

Query  314  LKVIVHESDGTQQVFTVPYDTPAVALRQGYFEYSVMGGEYRPANDAVQTTPVGALEMKYG  373
            L V V E+DG+ Q+F VPY+TPA+AL+QGY+ YS+++G YR+++ A + + ++   + YG
Sbjct  320  LHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATLMYG  379

Query  374  LPWNLTLYGGLQGAGNYQAAALGIGSLLGDFGALSADVVQSNSKKDNQQKESGQRWRVRY  433
            LPWNLT YGG+Q+A +YQAA+LG+G+ LG  G+LS D  +++S+++ +  + G  WR+RY
Sbjct  380  LPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLRY  439

Query  434  NKSL-DSGTSVNIASEEYATEGFNTLSDTLNTYCKPDAGNI-CYSDYKKPKNKVNLSISQ  491
            ++ L  +GT++ ++  +YA++G+NTLSD L++Y + ++  +    +  +P ++  L +SQ
Sbjct  440  SNQLTATGTNLFLTRWQYASQGYNTLSDVLDSY-RHNGNRLWSWRENLQPSSRTTLMLSQ  498

Query  492  TTDGW----GTFNFNGYRQNYWNDKSTTTSFTAGYSRMFDSGISLNVNLSKTQNIDKNGK  547
            +   W    G +++ G R + +N  +   S+  + +  +++G SL++N ++ + + +NG 
Sbjct  499  S---WGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGG-SLSLNWNQNRTLWRNGG  554

Query  548  KTNDRLTSLWLSFPLSRWLSNSSVNANYQMTSDTRGDSMHEFGVYGDAFNRQLHWDLRER  607
              ++ +TSLW+S PLSRW + ++V+A+ QMTS ++G+  ++ GV G+AF++QL+W++R+ 
Sbjct  555  HRKENITSLWFSMPLSRW-TGNNVSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQS  613

Query  608  YR-DNASDNKASSALSLNYRGTYGELRGNYSYDKKQRQLGIGINGNIVATQYGITAGQSS  666
            YR D +++   +SAL L   G+YG L G+YSY +  RQ+G+ I G IV  + G+T GQ+ 
Sbjct  614  YRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQPL  673

Query  667  GDTMALVQAPGVDGASVGYWPGMKTDFRGYTSYGYLTPYRENNIDINPVTLPKNAEISQT  726
             +++ALV+APG  G +VG WPG+KTDFRG T+ G L+ Y+EN + ++P  LP +AE++QT
Sbjct  674  QGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLDPSQLPDDAEVTQT  733

Query  727  STRVVPTKGAVVLAKFDTRIGGRLLLQLKRSDNKPVPFGSVATVEGQASSSGIVGDNSQV  786
              RVVPT GAVV AKF+TRIG+R L+ LKR D  ++PFG+   V+GQ +S+++V+ +SQV
Sbjct  734  DVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQDGSADLVDTDSQV  793

Query  787  YLTGVPKEATVKIQWGKDKTQSCHARVLLPEDVNTTGIYNLTAVC  831
            YLTG++  + + ++WG   +Q C+    LP +   +G+Y+++++C
Sbjct  794  YLTGLADKGELTVKWG---AQQCRVNYHLPAHKGIAGLYQMSGLC  835

61) caf1A in NC_017155


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  598 bits (2258),  Expect = 6e-172, Method: Compositional matrix adjust.
 Identities = 357/816 (44%), Positives = 577/816 (71%), Gaps = 26/816 (3%)

Query  1    MLDTNSGESIDVSLFNQGLQLPGNYFVNVFVNGRKVDSGNIDFRLEKH-NGKELLWPCLS  59
            ML+ +++ ++D+SLFNQG+Q PG Y V+V VNG++VD+ ++ F+LEK+ +G  +L +CL+
Sbjct  30   MLG-DAAKGVDMSLFNQGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQGTPFLASCLT  88

Query  60   SLQLTKYGIDIDKYPDLIKSG--TEQCVDLLAIPHSDVQFYFNQQKLSLIVPPQALLPRF  117
              QL++YG+  + YP+L K++   ++C DL AIP++   + +N+Q+L L +P  AL P F
Sbjct  89   VSQLSRYGVKTEDYPQLWKAAKTPDECADLTAIPQAKAVLDINNQQLQLSIPQLALRPEF  148

Query  118  DGIMPMQLWDDGIPALFMNYNTNMQTRKFREG--GKSLDSYYAQLQPGLNIGAWRFRSST  175
             GI P +LWDDGIPA++MNY++      ++ +  G+  +S   QLQPG+NIGAWR R++T
Sbjct  149  KGIAPEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRD-NSSWVQLQPGINIGAWRVRNAT  207

Query  176  SWWKQQG------WQRSYIYAERGLNTIKSRLTLGETYSDSSIFDSIPIKGIKIASDESM  229
            SW  Q++      WQ +Y YAERGL ++KSRLTLG+  S++ IFDS+P+ G+ +ASD++M
Sbjct  208  SW--QRSSQLSGKWQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTGVMLASDDNM  265

Query  230  VPYYQWNFAPVVRGIARTQARVEVLRDGYTVSNELVPSGPFELANLPLGGGSGELKVIIH  289
            VPY +++FAPVVRGIARTQARVEV ++GYT+ N  V++GPF L +L++ ++SG+L V + 
Sbjct  266  VPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSGDLHVTVW  325

Query  290  ESDGTKQVFTVPYDTPAVALRKGYFEYSMMGGEYRPANDLTQTSYVGALGMKYGLPRNLT  349
            E+DG+ Q+F VPY+TPA+AL++GY+ YS+++G YR+++  T+ + ++   + YGLP+NLT
Sbjct  326  EADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATLMYGLPWNLT  385

Query  350  LYGGLQGSQNYHAAALGIGAMLGDFGAISTDVTQADSQKNKQKKESGQRWRVRYNKYL-Q  408
             YGG+Q++ +Y+AA+LG+G+ LG  G++S D ++++SQ++ +  + G  WR+RY++ L  
Sbjct  386  AYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLRYSNQLTA  445

Query  409  SGTSLNIASEEYATEGFNKLADTLNTYCKPNTRNDCRFDYAKPKNKVQFNLSQS-IPGSG  467
            +GT+L ++  +YA++G+N L+D L++Y     R   + +  +P ++  + LSQS     G
Sbjct  446  TGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQPSSRTTLMLSQSWGRHLG  505

Query  468  TLNFSGYRKNYWRDSRS-TTSFSVGYNHFFRNGMSLTLNLSKTQNINKYGEKTSELLSNI  526
             L++ G R + WR+  +   S++++    +  G SL+LN ++ + + + G    E ++++
Sbjct  506  NLSLIGSRTD-WRNRPGHDDSYGLSWGTSI-GGGSLSLNWNQNRTLWRNGGHRKENITSL  563

Query  527  WLSFPLSRWLGNNSINSNYQMTSDSHGNTTHEVGVYGEAFDRQLYWDVRERFNEKGRKYT  586
            W+S PLSRW GNN ++++ QMTS SHG  T++VGV GEAF +QL W+VR+ +   +    
Sbjct  564  WFSMPLSRWTGNN-VSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQSYRADAPPGG  622

Query  587  SN--ALNLNYRGTYGEISGNYSYDQTQSQLGIGVNGNMVITQYGITAGQKTGDTIALVQA  644
            +N  AL+L   G+YG ++G+YSY ++  Q+G+ + G +VI + G+T GQ   +++ALV+A
Sbjct  623  GNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQPLQGSVALVEA  682

Query  645  PDISGASVGYWPGMKTDFRGYTNYGYLTPYRENKVEINPVTLPNDAEITNNIVSVIPTKG  704
            P+ SG +VG WPG+KTDFRG T  G L+ Y+EN V ++P  LP+DAE+T+  V V+PT G
Sbjct  683  PGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLDPSQLPDDAEVTQTDVRVVPTEG  742

Query  705  AVVLAKFNARIGGRLFLHLKRSDNKPVPFGSIVTIEGQSSSSGIVGDNSGVYLTGLPKKS  764
            AVV AKF++RIG+R ++ LKR D  ++PFG+ V ++GQ +S+++V+ +S VYLTGL+ K+
Sbjct  743  AVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQDGSADLVDTDSQVYLTGLADKG  802

Query  765  KILVKWGRDKNQSCSSNVVLPEKTDISGAYRLSTTC  800
             + VKWG    Q C  N  LP   +I+G Y++S  C
Sbjct  803  ELTVKWG---AQQCRVNYHLPAHKGIAGLYQMSGLC  835

62) caf1A in NC_014022


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  598 bits (2258),  Expect = 6e-172, Method: Compositional matrix adjust.
 Identities = 357/816 (44%), Positives = 577/816 (71%), Gaps = 26/816 (3%)

Query  1    MLDTNSGESIDVSLFNQGLQLPGNYFVNVFVNGRKVDSGNIDFRLEKH-NGKELLWPCLS  59
            ML+ +++ ++D+SLFNQG+Q PG Y V+V VNG++VD+ ++ F+LEK+ +G  +L +CL+
Sbjct  30   MLG-DAAKGVDMSLFNQGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQGTPFLASCLT  88

Query  60   SLQLTKYGIDIDKYPDLIKSG--TEQCVDLLAIPHSDVQFYFNQQKLSLIVPPQALLPRF  117
              QL++YG+  + YP+L K++   ++C DL AIP++   + +N+Q+L L +P  AL P F
Sbjct  89   VSQLSRYGVKTEDYPQLWKAAKTPDECADLTAIPQAKAVLDINNQQLQLSIPQLALRPEF  148

Query  118  DGIMPMQLWDDGIPALFMNYNTNMQTRKFREG--GKSLDSYYAQLQPGLNIGAWRFRSST  175
             GI P +LWDDGIPA++MNY++      ++ +  G+  +S   QLQPG+NIGAWR R++T
Sbjct  149  KGIAPEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRD-NSSWVQLQPGINIGAWRVRNAT  207

Query  176  SWWKQQG------WQRSYIYAERGLNTIKSRLTLGETYSDSSIFDSIPIKGIKIASDESM  229
            SW  Q++      WQ +Y YAERGL ++KSRLTLG+  S++ IFDS+P+ G+ +ASD++M
Sbjct  208  SW--QRSSQLSGKWQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTGVMLASDDNM  265

Query  230  VPYYQWNFAPVVRGIARTQARVEVLRDGYTVSNELVPSGPFELANLPLGGGSGELKVIIH  289
            VPY +++FAPVVRGIARTQARVEV ++GYT+ N  V++GPF L +L++ ++SG+L V + 
Sbjct  266  VPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSGDLHVTVW  325

Query  290  ESDGTKQVFTVPYDTPAVALRKGYFEYSMMGGEYRPANDLTQTSYVGALGMKYGLPRNLT  349
            E+DG+ Q+F VPY+TPA+AL++GY+ YS+++G YR+++  T+ + ++   + YGLP+NLT
Sbjct  326  EADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATLMYGLPWNLT  385

Query  350  LYGGLQGSQNYHAAALGIGAMLGDFGAISTDVTQADSQKNKQKKESGQRWRVRYNKYL-Q  408
             YGG+Q++ +Y+AA+LG+G+ LG  G++S D ++++SQ++ +  + G  WR+RY++ L  
Sbjct  386  AYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLRYSNQLTA  445

Query  409  SGTSLNIASEEYATEGFNKLADTLNTYCKPNTRNDCRFDYAKPKNKVQFNLSQS-IPGSG  467
            +GT+L ++  +YA++G+N L+D L++Y     R   + +  +P ++  + LSQS     G
Sbjct  446  TGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQPSSRTTLMLSQSWGRHLG  505

Query  468  TLNFSGYRKNYWRDSRS-TTSFSVGYNHFFRNGMSLTLNLSKTQNINKYGEKTSELLSNI  526
             L++ G R + WR+  +   S++++    +  G SL+LN ++ + + + G    E ++++
Sbjct  506  NLSLIGSRTD-WRNRPGHDDSYGLSWGTSI-GGGSLSLNWNQNRTLWRNGGHRKENITSL  563

Query  527  WLSFPLSRWLGNNSINSNYQMTSDSHGNTTHEVGVYGEAFDRQLYWDVRERFNEKGRKYT  586
            W+S PLSRW GNN ++++ QMTS SHG  T++VGV GEAF +QL W+VR+ +   +    
Sbjct  564  WFSMPLSRWTGNN-VSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQSYRADAPPGG  622

Query  587  SN--ALNLNYRGTYGEISGNYSYDQTQSQLGIGVNGNMVITQYGITAGQKTGDTIALVQA  644
            +N  AL+L   G+YG ++G+YSY ++  Q+G+ + G +VI + G+T GQ   +++ALV+A
Sbjct  623  GNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQPLQGSVALVEA  682

Query  645  PDISGASVGYWPGMKTDFRGYTNYGYLTPYRENKVEINPVTLPNDAEITNNIVSVIPTKG  704
            P+ SG +VG WPG+KTDFRG T  G L+ Y+EN V ++P  LP+DAE+T+  V V+PT G
Sbjct  683  PGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLDPSQLPDDAEVTQTDVRVVPTEG  742

Query  705  AVVLAKFNARIGGRLFLHLKRSDNKPVPFGSIVTIEGQSSSSGIVGDNSGVYLTGLPKKS  764
            AVV AKF++RIG+R ++ LKR D  ++PFG+ V ++GQ +S+++V+ +S VYLTGL+ K+
Sbjct  743  AVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQDGSADLVDTDSQVYLTGLADKG  802

Query  765  KILVKWGRDKNQSCSSNVVLPEKTDISGAYRLSTTC  800
             + VKWG    Q C  N  LP   +I+G Y++S  C
Sbjct  803  ELTVKWG---AQQCRVNYHLPAHKGIAGLYQMSGLC  835

63) D781_3832 in NC_020064


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  596 bits (2253),  Expect = 2e-171, Method: Compositional matrix adjust.
 Identities = 395/847 (47%), Positives = 615/847 (73%), Gaps = 19/847 (2%)

Query  11   YVAGVFLAFLP--FSSTHARVWSFDTTQLAGDEQNVDIAIFEQGGQLPGKYFIDIVLNGV  68
            +    +L F++     ++A+  +FD++ L++  + VD+++F+QG Q PG Y +D+++NG 
Sbjct  3    FKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVNGK  62

Query  69   HVDSREMIFHMEKDAEGAPVLKTCLTRAQLISYGVNVDAYAALFAPSDNMSDQCARLSVI  128
            +VD+R+++F +EKD++G+P L +CLT +QL  YGV+ + Y+ L  ++   +D+CA L+ I
Sbjct  63   RVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKT-PDECADLTAI  121

Query  129  PQATEVFQFNSQQLQLSIPQVAMLPKLRGIAPPVLWDDGAPAFLMNYQTNVTRSDYRGDG  188
            PQA  V+++N+QQLQLSIPQ+A+ P ++GIAP  LWDDG PAFLMNY +  T++DY+ D 
Sbjct  122  PQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMDM  181

Query  189  QKHSDALFARVDPGINLGAWRLRNMTTFQKSGNRPGKWQTVESWAERGLYGLQSRLTLGE  248
              + ++   +++PGIN+GAWR+RN T+ Q+S++ +GKWQ+  + AERGLY+L+SRLTLG+
Sbjct  182  VGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLGQ  241

Query  249  RYTPSDIFNSVPFRGGMLGSDDLMVPYNQRDFAPVVRGIARTQARIEVRQGGYVIYSSTV  308
            + + ++IF+SVPF G ML+SDD MVPY++R+FAPVVRGIARTQAR+EV+Q GY IY++TV
Sbjct  242  KTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTV  301

Query  309  APGAFALSDLP-AGSNGDLQVTVYETDGRPQVFTVPWSTPAIALRQGYLRYNLMTGQYHP  367
            APG+FAL DL+ ++S+GDL+VTV E+DG  Q+F VP  TPAIAL+QGYL+Y+L++G+Y++
Sbjct  302  APGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRS  361

Query  368  ENRAVKQAPVVQATVMYGLPWNLTGYGGMQWSEHYQgaalglgvllgdlgalsldgMQGY  427
             + A  +A + QAT+MYGLPWNLT+YGG+Q + HYQ+A+LGLG  LG  G+LS+DG +  
Sbjct  362  SDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDTH  421

Query  428  GAEPEGRRTQGQTWRFRYNKTLAATNTGISLASSQYSASGGHSMNEVLDRWQDNEYAAGG  487
            +        QG +WR+RY++ L+AT T + L+  QY++ G +++++VLD      Y   G
Sbjct  422  SQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLD-----SYRHNG  476

Query  488  rf--rrwddrrrkarsdVTIGQSFD-NLGYLNVSASRESYWDSPQTRDEVMASWSTSAWG  544
                 ++++ +  +R+ + ++QS + +LG L++ +SR   ++ P   D    SW+TS  G
Sbjct  477  NRLWSWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGG  536

Query  545  VNWSVNWTQRKQPARGNAAYGRHYQREQEGSLWVSVPLERWTGGNAYATYQAQSNSDGRV  604
             + S+NW Q +   R  +      ++E+  SLW S+PL RWTG N  A+ Q  S S+G  
Sbjct  537  GSLSLNWNQNRTLWRNGG-----HRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQ  591

Query  605  RHEVGLTGNAFERQLNWNVRQQLEQGGGYDRQNGGLVNLSWNGAYGVLNGGYSYNKNSRQ  664
             ++VG+ G+AF +QL+W+VRQ    ++  +  N + ++L+WNGAYG+L G+YSY++  RQ
Sbjct  592  TQQVGVNGEAFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQ  651

Query  665  SNAGLAGGLVVHQHGITLGQPLGRTTalvaapgvagasvgswagvRTDSRGYAMQTGLTP  724
                +AGG+V+H+HG+TLGQPL  + ALV APG +G +VG+W+GV+TD RG +    L+ 
Sbjct  652  MGVNIAGGIVIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSV  711

Query  725  YQENTVELDPLTLPQDAEVPQTVMRLVPTEGAVIPVRFTARIGARAVVALQQSDGKSVPF  784
            YQENTV LDP  LP+DAEV QT +R+VPTEGAV+  +F +RIGARA+++L++ DG ++PF
Sbjct  712  YQENTVSLDPSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPF  771

Query  785  GALVTLDGERSTGSGIVGEAGQVYLSGLPDSGELDVRWGEGKRCHAAFQLPEKKGPAGIY  844
            GA V ++G+   ++++V+  +QVYL+GL+D GEL V+WG +++C+  ++LP  KG AG+Y
Sbjct  772  GAQVIVNGQ-DGSADLVDTDSQVYLTGLADKGELTVKWG-AQQCRVNYHLPAHKGIAGLY  829

Query  845  NLQSPCR  851
            ++ + CR
Sbjct  830  QMSGLCR  836

64) SN31241_6420 in NC_021902


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  590 bits (2228),  Expect = 1e-169, Method: Compositional matrix adjust.
 Identities = 359/729 (50%), Positives = 536/729 (74%), Gaps = 28/729 (3%)

Query  1    MLLSIPQIALRPHYTGIAPQALWNDGIPAFLMDYQASSFRSSYRSNGATLNTNGMDVQLL  60
            + LSIPQ+ALRP++ GIAP+ LW+DGIPAFLM+Y A + ++ Y+ +    + ++  VQL 
Sbjct  135  LQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRDNSSW-VQLQ  193

Query  61   PGLNFGAWRLRNLTTWQKQNSQKGKWQTSYTYAERGLYSLKSRLTLGDRFTPSDVFDSVP  120
            PG+N+GAWR+RN T+WQ+ +   GKWQ++YTYAERGLYSLKSRLTLG++ + +++FDSVP
Sbjct  194  PGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVP  253

Query  121  FRGGMIGSDDSMVPYSQRAFAPVVQGVALTQARIEVKQNGYVIYNTTVAPGPFALSDLPG  180
            F G M++SDD+MVPYS+R FAPVV+G+A TQAR+EVKQNGY IYNTTVAPGPFAL DL+ 
Sbjct  254  FTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSV  313

Query  181  VNGGGDLQVTVFEADGTRQIFTVPYTTPAIALRQGYLKYNVMMGQYRSADTSVDKEPVGQ  240
             +++GDL+VTV EADG+ Q+F VPY TPAIAL+QGYLKY+++ G+YRS+D++ DK  ++Q
Sbjct  314  TDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQ  373

Query  241  ATIMYGLPWNLTAYSGGQWASHYQAGTLGLGVSLGAFGAVSVDSTLSRGQKRNQDVERGQ  300
            AT+MYGLPWNLTAY+G Q A+HYQA++LGLG SLG  G++SVD++ +++Q++ + V++G 
Sbjct  374  ATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGA  433

Query  301  SWRVRYSKSFESTNTGFTLASYQYASPGYNTLSGVLDSYRSGEAWPSKEYWYPGAGYQSS  360
            SWR+RYS+ + +T T + L+  QYAS GYNTLS+VLDSYR      ++  W        S
Sbjct  434  SWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHN----GNRLW--------S  481

Query  361  WNNNNFADKRKSRTSVTLNQPLG-EWGALYFSGSREDYWNRSQSQNEVSARYSGPMIQGI  419
            W +N    +  SRT++ L+Q+ G + G L + GSR D W    ++++  +   G  I G 
Sbjct  482  WRENL---QPSSRTTLMLSQSWGRHLGNLSLIGSRTD-WRNRPGHDDSYGLSWGTSIGGG  537

Query  420  SWSVDWTQRKWNYSIYRGNNDNKTEQSINLWINVPLNRWLGGNTSVSYQMQNRTNQGTLH  479
            S S++W Q +   ++ R N +++ E+  +LW+++PL+RW G N S S QM + ++ G  +
Sbjct  538  SLSLNWNQNR---TLWR-NGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQ  593

Query  480  NMGLNGYAFDQRLYWNVSEQIAQGGTGSNQNSSDLNLRWNGTYGEISGGYGYRKNGNQVN  539
            ++G+NG AF Q+L W+V +    ++  +  N+S L+L WNG+YG ++G+Y+Y +   Q+ 
Sbjct  594  QVGVNGEAFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMG  653

Query  540  AGVQGSMVVHRDGVTFGQRLGKTAALIKAPDASGVSVINAAGVKTDFRGYTTLGNLAPYQ  599
              + G++V+H++GVT+GQ L  + AL+ AP+ASGV+V   +GVKTDFRG TT+GNL+ YQ
Sbjct  654  VNIAGGIVIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQ  713

Query  600  ENIISLNPVTLPANVAIPQTDTRVVPTEGAIIPASFATRVGGRALITLTQVNGKPVPFGA  659
            EN +SL+P  LP +  + QTD RVVPTEGA++ A F TR+G+RAL+TL + +G ++PFGA
Sbjct  714  ENTVSLDPSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGA  773

Query  660  VASLVGQEDTRWDTGIVGDSGDVYMSGLPEKGQLQVMWGNGQQQHCRADYQLLKSDEIAG  719
               + GQ+++   +++V+  ++VY++GL++KG+L V WG    Q+CR +Y+L     IAG
Sbjct  774  QVIVNGQDGS---ADLVDTDSQVYLTGLADKGELTVKWGA---QQCRVNYHLPAHKGIAG  827

Query  720  VSNLKALCR  728
            + ++ +LCR
Sbjct  828  LYQMSGLCR  836

65) O3M_26187 in NC_018654


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  582 bits (2198),  Expect = 3e-167, Method: Compositional matrix adjust.
 Identities = 367/806 (46%), Positives = 568/806 (71%), Gaps = 34/806 (4%)

Query  2    PGIYPVDIILNGSRIDSRDIFFYTKKNRHGEYYLKPCLTRDILINYGVKIEEYPNLFRQN  61
            PG Y VD+++NG R+D+RD+ F   K+ +G  +L +CLT   L  YGVK E+YP+L +  
Sbjct  50   PGTYRVDVMVNGKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAA  109

Query  62   SEKNRDSSDCADLSVIPQATEDYHFIKQQLILGIPQVAIHPPLTGIAHETMWDDGISAFL  121
                + + +CADL+ IPQA    ++ +QQL L+IPQ+A++P + GIA E +WDDGI+AFL
Sbjct  110  ----KTPDECADLTAIPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFL  165

Query  122  LNWQVEGGHWEYRSNTRNSSDNFWASLEPGINLGSWRIRNLTTWNKSSGQSGKWESSYIR  181
            +N      + +Y+ +     ++ W  L+PGIN+G+WR+RN T+W++SS  SGKW+++Y  
Sbjct  166  MNYSARTTQTDYKMDMVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTY  225

Query  182  VERGLNNIKSRLTFGDDYTPSDIFDSVPFRGGMLGSDENMVPYNQREFAPVVRGIARTQA  241
             ERGL ++KSRLT+G+  + ++IFDSVPF G ML+SD+NMVPY++R+FAPVVRGIARTQA
Sbjct  226  AERGLYSLKSRLTLGQKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQA  285

Query  242  RIEVRQNGYLIQSRIVSPGAFALTDLPVTGNGGDLQVWVLESDGTIQTFNVPFTTPAIAL  301
            R+EV+QNGY I +  V+PG+FAL DL+VT+++GDL+V V E+DG+ Q F VP+ TPAIAL
Sbjct  286  RVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIAL  345

Query  302  REGYLKYNVTVGEYRPSDDSIEGAYLGQLTAMYGLPWSLTAFGGIQVSEHYQGNAlglgl  361
            ++GYLKY++  G YR+SD + + A ++Q T MYGLPW+LTA+GGIQ + HYQ+ +LGLG 
Sbjct  346  HQGYLKYSLLAGRYRSSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGG  405

Query  362  slggfgsislDTIYSRGQQKGYSNEIGKTWRVRYDKSFELTGTS-FAAGYQDSSAGYHSL  420
            SLG  GS+S+D   +++Q++G + + G +WR+RY + +  TGT+ F +  Q +S GY++L
Sbjct  406  SLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTL  465

Query  421  ADVLDTYRNGT----AYRSYDNRIRRTTINISQALG-EWGSVALNGGRDEYRDKVKQDYI  475
            +DVLD+YR+      + R   +   RTT+ +SQ+ G + G+++L G+R + R++  +D  
Sbjct  466  SDVLDSYRHNGNRLWSWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHD--  523

Query  476  GASYSNSW----KGITFAVNWSRNNNIGDYYSNSLRTENNLNLWMSIPMKRWLGGDDKGV  531
              SY+ SW     G ++++NW++N  +    + + R EN  +LW S+P+ RW G +   V
Sbjct  524  -DSYGLSWGTSIGGGSLSLNWNQNRTL--WRNGGHRKENITSLWFSMPLSRWTGNN---V  577

Query  532  TATAQIQRITGQNTLYETGLNGRAFGQKLYWDIRE----QIVPGSKYDADTSLLNLRWSG  587
            +A+ Q+   +      + G+NG AF+Q+L W++R+    +  PG+   ++ S L+L W+G
Sbjct  578  SASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQSYRADAPPGG---GNNSALHLAWNG  634

Query  588  GYGELTGMYSYNRNTRQMNVGTSGSMAIHSGGIAFGQKTDDTMALIAAPGIAGASVGGWP  647
            +YG L G YSY+R  RQM V  +G++ IH  G+++GQ  ++++AL+ APG +G +VG WP
Sbjct  635  AYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWP  694

Query  648  GVSTDFRGYTLVGHVSPYQENIITLDPTTFPDNTEVSQTDRRVIPTKGALVQAEFKTRVG  707
            GV TDFRG T VG++S YQEN ++LDP+ +PD++EV+QTD RV+PT GA+V+A F TR+G
Sbjct  695  GVKTDFRGDTTVGNLSVYQENTVSLDPSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIG  754

Query  708  NRALVTLTRKDGTLLPFGTVVTLERKTGEAFESAGVVDDKGKVYLSGLSEAGKLKAQWGT  767
             RAL+TL R DG+ +PFG+ V ++ + G    SA++VD  ++VYL+GL++ G L  +WG+
Sbjct  755  ARALMTLKREDGSAIPFGAQVIVNGQDG----SADLVDTDSQVYLTGLADKGELTVKWGA  810

Query  768  NSQCYADYKLPLKKGMSGIFLTRAVC  793
            + QC  +Y LP  KG++G++   ++C
Sbjct  811  Q-QCRVNYHLPAHKGIAGLYQMSGLC  835

66) O3O_26297 in NC_018662


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  582 bits (2198),  Expect = 3e-167, Method: Compositional matrix adjust.
 Identities = 367/806 (46%), Positives = 568/806 (71%), Gaps = 34/806 (4%)

Query  2    PGIYPVDIILNGSRIDSRDIFFYTKKNRHGEYYLKPCLTRDILINYGVKIEEYPNLFRQN  61
            PG Y VD+++NG R+D+RD+ F   K+ +G  +L +CLT   L  YGVK E+YP+L +  
Sbjct  50   PGTYRVDVMVNGKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAA  109

Query  62   SEKNRDSSDCADLSVIPQATEDYHFIKQQLILGIPQVAIHPPLTGIAHETMWDDGISAFL  121
                + + +CADL+ IPQA    ++ +QQL L+IPQ+A++P + GIA E +WDDGI+AFL
Sbjct  110  ----KTPDECADLTAIPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFL  165

Query  122  LNWQVEGGHWEYRSNTRNSSDNFWASLEPGINLGSWRIRNLTTWNKSSGQSGKWESSYIR  181
            +N      + +Y+ +     ++ W  L+PGIN+G+WR+RN T+W++SS  SGKW+++Y  
Sbjct  166  MNYSARTTQTDYKMDMVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTY  225

Query  182  VERGLNNIKSRLTFGDDYTPSDIFDSVPFRGGMLGSDENMVPYNQREFAPVVRGIARTQA  241
             ERGL ++KSRLT+G+  + ++IFDSVPF G ML+SD+NMVPY++R+FAPVVRGIARTQA
Sbjct  226  AERGLYSLKSRLTLGQKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQA  285

Query  242  RIEVRQNGYLIQSRIVSPGAFALTDLPVTGNGGDLQVWVLESDGTIQTFNVPFTTPAIAL  301
            R+EV+QNGY I +  V+PG+FAL DL+VT+++GDL+V V E+DG+ Q F VP+ TPAIAL
Sbjct  286  RVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIAL  345

Query  302  REGYLKYNVTVGEYRPSDDSIEGAYLGQLTAMYGLPWSLTAFGGIQVSEHYQGNAlglgl  361
            ++GYLKY++  G YR+SD + + A ++Q T MYGLPW+LTA+GGIQ + HYQ+ +LGLG 
Sbjct  346  HQGYLKYSLLAGRYRSSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGG  405

Query  362  slggfgsislDTIYSRGQQKGYSNEIGKTWRVRYDKSFELTGTS-FAAGYQDSSAGYHSL  420
            SLG  GS+S+D   +++Q++G + + G +WR+RY + +  TGT+ F +  Q +S GY++L
Sbjct  406  SLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTL  465

Query  421  ADVLDTYRNGT----AYRSYDNRIRRTTINISQALG-EWGSVALNGGRDEYRDKVKQDYI  475
            +DVLD+YR+      + R   +   RTT+ +SQ+ G + G+++L G+R + R++  +D  
Sbjct  466  SDVLDSYRHNGNRLWSWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHD--  523

Query  476  GASYSNSW----KGITFAVNWSRNNNIGDYYSNSLRTENNLNLWMSIPMKRWLGGDDKGV  531
              SY+ SW     G ++++NW++N  +    + + R EN  +LW S+P+ RW G +   V
Sbjct  524  -DSYGLSWGTSIGGGSLSLNWNQNRTL--WRNGGHRKENITSLWFSMPLSRWTGNN---V  577

Query  532  TATAQIQRITGQNTLYETGLNGRAFGQKLYWDIRE----QIVPGSKYDADTSLLNLRWSG  587
            +A+ Q+   +      + G+NG AF+Q+L W++R+    +  PG+   ++ S L+L W+G
Sbjct  578  SASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQSYRADAPPGG---GNNSALHLAWNG  634

Query  588  GYGELTGMYSYNRNTRQMNVGTSGSMAIHSGGIAFGQKTDDTMALIAAPGIAGASVGGWP  647
            +YG L G YSY+R  RQM V  +G++ IH  G+++GQ  ++++AL+ APG +G +VG WP
Sbjct  635  AYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWP  694

Query  648  GVSTDFRGYTLVGHVSPYQENIITLDPTTFPDNTEVSQTDRRVIPTKGALVQAEFKTRVG  707
            GV TDFRG T VG++S YQEN ++LDP+ +PD++EV+QTD RV+PT GA+V+A F TR+G
Sbjct  695  GVKTDFRGDTTVGNLSVYQENTVSLDPSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIG  754

Query  708  NRALVTLTRKDGTLLPFGTVVTLERKTGEAFESAGVVDDKGKVYLSGLSEAGKLKAQWGT  767
             RAL+TL R DG+ +PFG+ V ++ + G    SA++VD  ++VYL+GL++ G L  +WG+
Sbjct  755  ARALMTLKREDGSAIPFGAQVIVNGQDG----SADLVDTDSQVYLTGLADKGELTVKWGA  810

Query  768  NSQCYADYKLPLKKGMSGIFLTRAVC  793
            + QC  +Y LP  KG++G++   ++C
Sbjct  811  Q-QCRVNYHLPAHKGIAGLYQMSGLC  835

67) O3K_26207 in NC_018666


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  582 bits (2198),  Expect = 3e-167, Method: Compositional matrix adjust.
 Identities = 367/806 (46%), Positives = 568/806 (71%), Gaps = 34/806 (4%)

Query  2    PGIYPVDIILNGSRIDSRDIFFYTKKNRHGEYYLKPCLTRDILINYGVKIEEYPNLFRQN  61
            PG Y VD+++NG R+D+RD+ F   K+ +G  +L +CLT   L  YGVK E+YP+L +  
Sbjct  50   PGTYRVDVMVNGKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAA  109

Query  62   SEKNRDSSDCADLSVIPQATEDYHFIKQQLILGIPQVAIHPPLTGIAHETMWDDGISAFL  121
                + + +CADL+ IPQA    ++ +QQL L+IPQ+A++P + GIA E +WDDGI+AFL
Sbjct  110  ----KTPDECADLTAIPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFL  165

Query  122  LNWQVEGGHWEYRSNTRNSSDNFWASLEPGINLGSWRIRNLTTWNKSSGQSGKWESSYIR  181
            +N      + +Y+ +     ++ W  L+PGIN+G+WR+RN T+W++SS  SGKW+++Y  
Sbjct  166  MNYSARTTQTDYKMDMVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTY  225

Query  182  VERGLNNIKSRLTFGDDYTPSDIFDSVPFRGGMLGSDENMVPYNQREFAPVVRGIARTQA  241
             ERGL ++KSRLT+G+  + ++IFDSVPF G ML+SD+NMVPY++R+FAPVVRGIARTQA
Sbjct  226  AERGLYSLKSRLTLGQKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQA  285

Query  242  RIEVRQNGYLIQSRIVSPGAFALTDLPVTGNGGDLQVWVLESDGTIQTFNVPFTTPAIAL  301
            R+EV+QNGY I +  V+PG+FAL DL+VT+++GDL+V V E+DG+ Q F VP+ TPAIAL
Sbjct  286  RVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIAL  345

Query  302  REGYLKYNVTVGEYRPSDDSIEGAYLGQLTAMYGLPWSLTAFGGIQVSEHYQGNAlglgl  361
            ++GYLKY++  G YR+SD + + A ++Q T MYGLPW+LTA+GGIQ + HYQ+ +LGLG 
Sbjct  346  HQGYLKYSLLAGRYRSSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGG  405

Query  362  slggfgsislDTIYSRGQQKGYSNEIGKTWRVRYDKSFELTGTS-FAAGYQDSSAGYHSL  420
            SLG  GS+S+D   +++Q++G + + G +WR+RY + +  TGT+ F +  Q +S GY++L
Sbjct  406  SLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTL  465

Query  421  ADVLDTYRNGT----AYRSYDNRIRRTTINISQALG-EWGSVALNGGRDEYRDKVKQDYI  475
            +DVLD+YR+      + R   +   RTT+ +SQ+ G + G+++L G+R + R++  +D  
Sbjct  466  SDVLDSYRHNGNRLWSWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHD--  523

Query  476  GASYSNSW----KGITFAVNWSRNNNIGDYYSNSLRTENNLNLWMSIPMKRWLGGDDKGV  531
              SY+ SW     G ++++NW++N  +    + + R EN  +LW S+P+ RW G +   V
Sbjct  524  -DSYGLSWGTSIGGGSLSLNWNQNRTL--WRNGGHRKENITSLWFSMPLSRWTGNN---V  577

Query  532  TATAQIQRITGQNTLYETGLNGRAFGQKLYWDIRE----QIVPGSKYDADTSLLNLRWSG  587
            +A+ Q+   +      + G+NG AF+Q+L W++R+    +  PG+   ++ S L+L W+G
Sbjct  578  SASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQSYRADAPPGG---GNNSALHLAWNG  634

Query  588  GYGELTGMYSYNRNTRQMNVGTSGSMAIHSGGIAFGQKTDDTMALIAAPGIAGASVGGWP  647
            +YG L G YSY+R  RQM V  +G++ IH  G+++GQ  ++++AL+ APG +G +VG WP
Sbjct  635  AYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWP  694

Query  648  GVSTDFRGYTLVGHVSPYQENIITLDPTTFPDNTEVSQTDRRVIPTKGALVQAEFKTRVG  707
            GV TDFRG T VG++S YQEN ++LDP+ +PD++EV+QTD RV+PT GA+V+A F TR+G
Sbjct  695  GVKTDFRGDTTVGNLSVYQENTVSLDPSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIG  754

Query  708  NRALVTLTRKDGTLLPFGTVVTLERKTGEAFESAGVVDDKGKVYLSGLSEAGKLKAQWGT  767
             RAL+TL R DG+ +PFG+ V ++ + G    SA++VD  ++VYL+GL++ G L  +WG+
Sbjct  755  ARALMTLKREDGSAIPFGAQVIVNGQDG----SADLVDTDSQVYLTGLADKGELTVKWGA  810

Query  768  NSQCYADYKLPLKKGMSGIFLTRAVC  793
            + QC  +Y LP  KG++G++   ++C
Sbjct  811  Q-QCRVNYHLPAHKGIAGLYQMSGLC  835

68) myfC in NC_008800


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  570 bits (2153),  Expect = 1e-163, Method: Compositional matrix adjust.
 Identities = 367/797 (47%), Positives = 570/797 (72%), Gaps = 34/797 (4%)

Query  1    MDIFLGDEKVDSTNVTFHAVKSPTGEYSLQSCLTKEQLSRYGVDVDNYPELLPPEKNIQQ  60
            +D+ + + +VD+ +V F   K   G   L SCLT  QLSRYGV  ++YP+L  + K    
Sbjct  55   VDVMVNGKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKT---  111

Query  61   DKQASQCVNLAAIPQASEEFEFYAMRLVLNIPQVALRP--KDEIPVERWDDGITAFLLNY  118
               + +C +L+AIPQA   +++   +L L+IPQ+ALRP  K+  P + WDDGI AFL+NY
Sbjct  112  ---PDECADLTAIPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNY  168

Query  119  MANSSTTTYR-QTGEQRSSHYVQLYPGFNIGAWRIRNATSWNQSGNSAGKWQSSYIYATR  177
             A ++ T Y+ +   + +S  VQL PG+NIGAWR+RNATSW++S++ +GKWQ++Y YA R
Sbjct  169  SARTTQTDYKMDMVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAER  228

Query  178  GLYRLKSRVTLGQSYTPGDFFDSMPFSGVMLGDDDNMLPSRQRDFIPVVRGIARSQARVE  237
            GLY LKSR+TLGQ  + G++FDS+PF+GVML+ DDNM+P  +R+F PVVRGIAR+QARVE
Sbjct  229  GLYSLKSRLTLGQKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVE  288

Query  238  VRQNGYLLYSTVVSPGPFKLTDMLPSHSNGDLHVTVLESNGTTQQFTVPYSVPAIALRKG  297
            V+QNGY +Y+T V+PGPF L D+  ++S+GDLHVTV E++G+TQ F VPY  PAIAL++G
Sbjct  289  VKQNGYTIYNTTVAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQG  348

Query  298  RLRYNLMAGRYRPANVDVETTPIAQATVAYGLPWNLTAFVGGQWSPHYQATTAGMGVMLG  357
             L+Y+L+AGRYR+++   + + IAQAT+ YGLPWNLTA+ G Q + HYQA++ G+G  LG
Sbjct  349  YLKYSLLAGRYRSSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLG  408

Query  358  DYGALSSSITQATSEYRQQQPV-KGQVWEVRYNKTLQASDTSFSVVNSQYSTADFSNLSD  416
              G+LS   +++ S+ RQ ++V +G  W +RY++ L A++T++ +   QY++ +++ LSD
Sbjct  409  RWGSLSVDGSDTHSQ-RQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSD  467

Query  417  VLQSYRRHDYSRRDWHSN-SLRHQIHVVVGQPLG-QFGYLNL-----NWSRQSYRDAPAS  469
            VL+SYR+++   + W+ N     +  ++++Q+ G ++G L+L     +W  ++ +D + +
Sbjct  468  VLDSYRHNGNRLWSWRENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYG  527

Query  470  SSWGVRYSFNIGNLYWSLDWTQNQ--YRGNQDR---LLSLSVSMPLGR--DHDTYAAYRM  522
             SWG   S+  G+L  SL+W QN+   R   +R   + SL  SMPL+R  +++  A+ +M
Sbjct  528  LSWGT--SIGGGSL--SLNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQM  583

Query  523  TSSAN-SKDHELSLYGHAFDNRLSWNVRQTEHYAQFHSGENSGSLGLDWHgsygdiggdy  581
            TS+++ ++ +++++ G+AF ++L W+VRQ+ +     +G N+++L L W+G+YG +GGDY
Sbjct  584  TSPSHGGQTQQVGVNGEAFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDY  643

Query  582  yyTPTMRQCSANVSGGAVIHRHGLTLGPQINGTAALIEVPGVSGVSTSEDHRLKTDFRGY  641
             Y+ +MRQ + N++GG VIH+HG+TLG  ++G+ AL+E PG SGV+ +    +KTDFRG 
Sbjct  644  SYSRAMRQMGVNIAGGIVIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGD  703

Query  642  SIVPSIFPYQEHDISLETTDLPPDAEVTNTDAKVLPTEGAIVRASFSPQIGARALMTITR  701
            + V ++  YQE+ +SL+ ++LP DAEVT+TD +V+PTEGA+V A F  +IGARALMT+ R
Sbjct  704  TTVGNLSVYQENTVSLDPSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKR  763

Query  702  NNGETIPFGAMASLVNQPANAAIVDEGGKAYLTGLPETGQLLVQWGRDASQQCRVDYQLA  761
            ++G +IPFGA   +  Q ++A +VD +++ YLTGL++ G+L V+WG   +QQCRV+Y+L+
Sbjct  764  EDGSAIPFGAQVIVNGQDGSADLVDTDSQVYLTGLADKGELTVKWG---AQQCRVNYHLP  820

Query  762  SAKKGDAGLYMLSGVCH  778
             A KG AGLY +SG+C+
Sbjct  821  -AHKGIAGLYQMSGLCR  836

69) Spro_1053 in NC_009832


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  544 bits (2052),  Expect = 1e-155, Method: Compositional matrix adjust.
 Identities = 356/843 (43%), Positives = 580/843 (69%), Gaps = 34/843 (4%)

Query  15   MILTALALSPAVQARDY-FNPALLEQGDARQSQTDLSVFEDAGGQPPGTYRVDILLNERL  73
            ++L   ++    +A+ Y F++++L ++       D+S+F++ G Q PGTYRVD+++N + 
Sbjct  8    LLLFIAGVVHCANAHTYTFDASMLGDAA---KGVDMSLFNQ-GVQQPGTYRVDVMVNGKR  63

Query  74   TETRMVTFSAAPDG-----LQPCLSVADLADWGVRTALFPAL---GSADSRCANLAAIPQ  125
             +TR V F    DG     L +CL+V++L+  GV+T  +P L   + +   CA+L+AIPQ
Sbjct  64   VDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTAIPQ  123

Query  126  ASAQLRFSQQQLVLSIPQAAMTPQPRGYVPSSQWDEGIPALILNYSLTGADTTARGSGRG  185
            A A L +++QQL LSIPQ A+ P+ +G  P   WD+GIPA+++NYS   ++T  +    G
Sbjct  124  AKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMDMVG  183

Query  186  SDSNSQFANLRPGLNAGPWRLRNYTTWRRSSDGKDKWDTVYTYAQRNLIGLQSQLTLGDS  245
             D++S   +L+PG+N G+WR+RN T+W+RSS+  +KW++ YTYA+R L +L+S+LTLG+ 
Sbjct  184  RDNSS-WVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLGQK  242

Query  246  NAPAEVFDAVPFRGVQLASDDEMLPDSLRGYAPVVRGIARTNAQVVVRQNGYEIYRTFVA  305
             + +E+FD+VPF GV LASDD+M+P S R +APVVRGIART+A+V V+QNGY IY T VA
Sbjct  243  TSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVA  302

Query  306  PGAFVINDMYPTGGSGDLQVTIKEADGSEQQLVVPFASLPVLQREGRLKYSLTGGQYRSY  365
            PG+F + D+  T++SGDL+VT+ EADGS Q +VVP+ + ++  ++G LKYSL +G+YRS 
Sbjct  303  PGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSS  362

Query  366  DRSVDKSALVQGTAIYGLPWNTTLYGGVQAAQHYQSAALGLGNNLGEWGAFSVDMTQSRS  425
            D + DK+ + Q+T +YGLPWN T YGG+Q+A HYQ+A+LGLG +LG WG++SVD ++++S
Sbjct  363  DSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDTHS  422

Query  426  QPKDQDSATGQSWRVRYSKNLVQTGTNFAIAGYRYSTAGFYSLAEVLDGWRSSSTPFW--  483
            Q +++    G SWR+RYS++L  TGTN+ ++  +Y++ G+ +L++VLD+ R ++  +W  
Sbjct  423  QRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLWSW  482

Query  484  -QNERRRNRAELSMNQQLGPQAGSLSLSAVREDYWNSERSLASLGLGYSNSW----RGIS  538
             +N +  +R+ L ++Q  G + G+LSL + R D W   R+ ++ + +Y+ SW     G S
Sbjct  483  RENLQPSSRTTLMLSQSWGRHLGNLSLIGSRTD-W---RNRPGHDDSYGLSWGTSIGGGS  538

Query  539  YGVNWSYNRNT-QGATRSNDQQIALNLNVPLNLWDNNNAWVNYGLNSTKGGATSHNLGLS  597
             ++NW+ NR   + + + +++  +L +++PL+ W  NN   +  + S   G+ ++++G++
Sbjct  539  LSLNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVN  598

Query  598  GVALRDNSLSWGVQQTY---GSRGQGYGGNSNLDYRGTYGEVTAGYGYDKDSRRLNYGLQ  654
            G A+ ++ L W V+Q+Y   ++ G G  +  +L   G+YG + ++Y+Y +  R++   + 
Sbjct  599  GEAFSQQ-LDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIA  657

Query  655  GSVVAHQNGITLGQPLGETaalvaapgapgvsvsNQTGVRTDYRGYALVPYLTPYRNGNV  714
            G++V H++G+TLGQPL  + ALV APGA+GV+V+   GV+TD+RG + V  L+ Y++  V
Sbjct  658  GGIVIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTV  717

Query  715  ALNPETLPTDAEIEQNSQRVTPTRGALVRATFTAKVGARVLMTLTQADGRPVPFGATVSE  774
            +L+P  LP DAE+ Q   RV PT GA+V A F +++GAR LMTL + DG ++PFGA V  
Sbjct  718  SLDPSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIV  777

Query  775  TDQNAAQGSIVGDSGQVYLSGLADSGSLRVKWGNGSGGECRVNYRLPTGAPVGGIMQIEG  834
             +Q+++ + +V+  +QVYL+GLAD G L VKWG   + +CRVNY+LP+   ++G+ Q+ G
Sbjct  778  NGQDGS-ADLVDTDSQVYLTGLADKGELTVKWG---AQQCRVNYHLPAHKGIAGLYQMSG  833

Query  835  ICR  837
            +CR
Sbjct  834  LCR  836

70) Spro_2874 in NC_009832


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  531 bits (2002),  Expect = 1e-151, Method: Compositional matrix adjust.
 Identities = 351/853 (42%), Positives = 578/853 (68%), Gaps = 38/853 (4%)

Query  8    RYRQVPLAGLIVLQLVLQPTAQSRDY-FNPALLTIGTPQQDGVDLSAFENAGGQIPGVYR  66
            +++Q +L  L+ +  V++  A+++ Y F++++L  ++    GVD+S F++ G Q PG YR
Sbjct  2    KFKQPAL--LLFIAGVVH-CANAHTYTFDASMLGDAA---KGVDMSLFNQ-GVQQPGTYR  54

Query  67   VDIFLNQQMVATRSVTFHADPKGDG---LQPCLSMAELGDYGVQVSRFPTL---GAADST  120
            VD+ +N + V TR V F  +  G+G   L +CL++++L+ YGV+   +P L   + +   
Sbjct  55   VDVMVNGKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDE  114

Query  121  CVDLTAIPQASSRLQFNQQRLLLSIPQAAIKQQPRGYVSPAQWDEGVPALLLNYSLSGAN  180
            C DLTAIPQA + L++N+Q+L LSIPQ A++ + +G  +   WD+G+PA+L+NYS   ++
Sbjct  115  CADLTAIPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQ  174

Query  181  TYARNESGSNGNNQYANLRPGANLGPWRLRNYTTWGRDSDGQDKWNTVYTYAQRNLIGLQ  240
            T  + +  + +N+   +L+PG N+G+WR+RN T+W R S+  +KW++ YTYA+R L +L+
Sbjct  175  TDYKMDMVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLK  234

Query  241  SQMTLGDSNAPSEVFDAVPFRGGQLASDDDMLPDSLRGYAPIVRGIARTNAQVVVRQNGY  300
            S++TLG+  + +E+FD+VPF G  LASDD+M+P S R +AP+VRGIART+A+V V+QNGY
Sbjct  235  SRLTLGQKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGY  294

Query  301  EIYRTYVAPGAFVIDDMYPTGGSGDLHVTIKEADGSEQQLVVPFASLPVLQREGRLKYSL  360
             IY T VAPG+F + D+  T++SGDLHVT+ EADGS Q +VVP+ + ++  ++G LKYSL
Sbjct  295  TIYNTTVAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSL  354

Query  361  TAGQYRSYDHSVDKSALMQGTAIYGLPWNSTLYGGVQMAQRYQSAALGVGNNLGDWGAFS  420
             AG+YRS D + DK+ + Q+T +YGLPWN T YGG+Q A +YQ+A+LG+G +LG WG++S
Sbjct  355  LAGRYRSSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLS  414

Query  421  VDVTQSRGQQKGLDRQTGQSWRMRYSKNMVQTGTNFAIAGYRYSTAGFYALSEVLDTWRS  480
            VD +++++Q++G   Q G SWR+RYS+++  TGTN+ ++  +Y++ G+ +LS+VLD+ R 
Sbjct  415  VDGSDTHSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRH  474

Query  481  GEMAYWAYE---RRRNRAELSMSQQLW-QDGGSLSLSAIREDYWNSDRSMASLGLGYSNS  536
                 W+     +  +R+ L +SQ  W ++ G+LSL + R D W   R+ ++ + +Y+ S
Sbjct  475  NGNRLWSWRENLQPSSRTTLMLSQS-WGRHLGNLSLIGSRTD-W---RNRPGHDDSYGLS  529

Query  537  W----QGISYGVNWSYNRNSF--GPQRSNDQQIVFNLNMPLNLWDnnsswvnynlnnTKG  590
            W     G S ++NW+ NR     G +R ++   +  ++MPL+ W  N+   + ++ +   
Sbjct  530  WGTSIGGGSLSLNWNQNRTLWRNGGHRKENITSLW-FSMPLSRWTGNNVSASWQMTSPSH  588

Query  591  GATSQSLGLSGMALRDNSLSWAAQQNY---GSRGQGYGGNLNLDYKGTYGELSSGYGYDR  647
            G+ +Q +G++G A+ ++ L W  +Q+Y   ++ G G  + L+L  +G+YG L+++Y+Y R
Sbjct  589  GGQTQQVGVNGEAFSQQ-LDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSR  647

Query  648  NSQRLNYGLQGSVVAHASGVTLGQPLGETAALVAMPGAAGVSVNNQTGVRTDWRGYALVP  707
              +++   + G++V H  GVTLGQPL  + ALV  PGA+GV+V    GV+TD RG + V 
Sbjct  648  AMRQMGVNIAGGIVIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVG  707

Query  708  YLTPYRSTDVTLATETLSADTDVAQTSHRVVPTRGALVRATFSAKVGARALMTLTQGNGK  767
             L+ Y+   V+L    L+ D++V+QT  RVVPT GA+V A F +++GARALMTL + +G 
Sbjct  708  NLSVYQENTVSLDPSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGS  767

Query  768  PVPFGATVSEADQNAAQGSIVGDAGQVYLSGLAEQGKLRVLWGNGNTGQCWVNYQLPTTP  827
            ++PFGA V   +Q+++ + +V+  +QVYL+GLA++G L V WG   + QC+VNY+LP+  
Sbjct  768  AIPFGAQVIVNGQDGS-ADLVDTDSQVYLTGLADKGELTVKWG---AQQCRVNYHLPAHK  823

Query  828  QPGGVVQINEVCR  840
              +G+ Q++ +CR
Sbjct  824  GIAGLYQMSGLCR  836

71) Y11_30771 in NC_017564


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  503 bits (1896),  Expect = 3e-143, Method: Compositional matrix adjust.
 Identities = 330/824 (41%), Positives = 544/824 (67%), Gaps = 28/824 (3%)

Query  7    FNSALLEIDNQQQSHTDLSVFEQEPNQASGTYRVDIYINNELLDTRDVVFSMQKNAVGKE  66
            F++++L    +     D+S+F+Q  +Q+ GTYRVD+ +N   +DTRDVVF ++K++ G  
Sbjct  26   FDASML---GDAAKGVDMSLFNQGVQQP-GTYRVDVMVNGKRVDTRDVVFKLEKDGQGTP  81

Query  67   SLQPCLSAKALAEIGVKIEAFPQL-----GDGECADLSAIPQASAEFRLSAQQLLIRIPQ  121
             L +CL+   L+  GVK E +PQL       +ECADL+AIPQA A + ++ QQL + IPQ
Sbjct  82   FLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTAIPQAKAVLDINNQQLQLSIPQ  141

Query  122  AAITDKARGYVEPSQWDDGITALLLNYSVSGAQnnprnsknndsnsQYANLRPGFNIGPW  181
             A+    +G      WDDGI A+L+NYS   +Q + +       NS   +L+PG+NIG+W
Sbjct  142  LALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRDNSSWVQLQPGINIGAW  201

Query  182  RLSSYITWNRSSGRQDQWDTVYTYVQRNIIALKSQLIFGDSNSLTDVFDGVPFRGVQLAS  241
            R+ +  +W+RSS   ++W++ YTY +R + +LKS+L +G+  S  ++FD+VPF GV LAS
Sbjct  202  RVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTGVMLAS  261

Query  242  DDDMVPDSLKGYAPVVRGIAHSNAEVTIRQNGYVVYQHFVAPGAFEITDMFLTGTSGDLY  301
            DD+MVP S + +APVVRGIA+++A V ++QNGY +Y+  VAPG+F + D+ +T++SGDL 
Sbjct  262  DDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSGDLH  321

Query  302  VTVKEADGSEQLIVVPFASLPVLQREGRLKYALTGGQYRSYNSRIERTPFVQGTGIYGLP  361
            VTV EADGS Q++VVP+ + ++  ++G LKY+L +G+YRS +S  +++ + Q+T +YGLP
Sbjct  322  VTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATLMYGLP  381

Query  362  YGITIYGGIQGASRYQSLACGLGDNLGTLGAVSVDVTHAQATMQNQPQRSGQSLRTRYSK  421
              +T YGGIQ+A++YQ+ + GLG++LG  G++SVD +++++  Q ++ + G S R RYS+
Sbjct  382  WNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLRYSN  441

Query  422  NIAQTGTNIAIAGYRYATAGYYNLQETLDSYRKGQNTALAERHR----NRAEATMTQSLW  477
            +++ TGTN+ ++  +YA+ GY  L + LDSYR   N   + R+     +R+   ++QS W
Sbjct  442  QLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQPSSRTTLMLSQS-W  500

Query  478  -QEIGSVSLSLVNEGYWNSNRRLQSYGVGYNNSWHKVSYGVNYSYNLNFMASSAGSGKKY  536
             +++G++SL     + +N   + +SYG++   S    + +++ + N N      G+ +  
Sbjct  501  GRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTS--IGGGSLSLNWNQNRTLWRNGGHR--  556

Query  537  GKDQVIAFNISVPLAILLGNT-YASYTMNTSKKGSTTHIAGLKGTALASNNLSWSAQQGY  595
             K+++ ++ +S+PL+   GN   AS  M ++  G+ T+  G++G A+ S++L W  +Q+Y
Sbjct  557  -KENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGEAF-SQQLDWEVRQSY  614

Query  596  GSQRQ---GNSGNLAADYRGTYGEINAGYAYDNDMQRVNYGVQGGIVAHRDGVTFGQPLG  652
             ++     GN++ L     G+YG + ++Y+Y   M+++   + GGIV H++GVT+GQPL 
Sbjct  615  RADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQPLQ  674

Query  653  ETIALVKAPGAKAVELSSQNGVKTDYRGYAIVPYISPYRKNKIALNSATLSDDVELNQNT  712
             ++ALV APGA +V +++  GVKTD+RG + V  +S Y+ N ++L+++ L+DD E+ Q  
Sbjct  675  GSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLDPSQLPDDAEVTQTD  734

Query  713  QNVVPTRGAIVRASFVTQIGGRAMMTLLRPDGAPVPFGATVSDMATKGQGFIVGDTGQVY  772
              VVPT GA+V A F T+IG+RA+MTL R DG+++PFGA V   +  G + +V+  +QVY
Sbjct  735  VRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQDGSADLVDTDSQVY  794

Query  773  LTGLADSGQLIVKWGHDTSQQCHVDYSLSGKIETNSVQMLHGQC  816
            LTGLAD G+L VKWG   +QQC+V+Y L++     ++  + G C
Sbjct  795  LTGLADKGELTVKWG---AQQCRVNYHLPAHKGIAGLYQMSGLC  835

72) ECENHK_06965 in NC_018405


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  501 bits (1890),  Expect = 7e-143, Method: Compositional matrix adjust.
 Identities = 332/816 (41%), Positives = 554/816 (68%), Gaps = 36/816 (4%)

Query  26   FNPALLDVDNPQQGKTDLSIYEKGPGQAPGKYQVTIFINNNKIDTRDVTFILQKQDNGEN  85
            F++++L+  ++ +G  D+S++++G  Q PG Y+V + +N +++DTRDV F L+K+++G  
Sbjct  26   FDASMLG--DAAKG-VDMSLFNQGV-QQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQGTP  81

Query  86   SLQPCFTLSDLKSLGIKTDDYPQL--AVKGS--CADLHAIPAATATFRVSNQQLLLSIPQ  141
             L +C+T+S+L   G+KT+DYPQL  A K +  CADL AIP A A + ++NQQL LSIPQ
Sbjct  82   FLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTAIPQAKAVLDINNQQLQLSIPQ  141

Query  142  SALGQVPRGYIDPTEFDEGITAGILNYsasasqsharqqGMQDNSSQYVNLRPGLNVGAW  201
             AL    +G       D+GI A ++NYSA ++Q++ + + +  ++S  V+L+PG+N+GAW
Sbjct  142  LALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRDNSSWVQLQPGINIGAW  201

Query  202  RLRNYSTWSRSTSGHEEEQSFNSVYTYAQRDIVALKSDLTVGQSSSPADVFDSVPYTGAQ  261
            R+RN ++W RS+   +     ++ YTYA+R++ +LKS LT+GQ +S +++FDSVP+TG  
Sbjct  202  RVRNATSWQRSS---QLSGKWQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTGVM  258

Query  262  LNSDNDMLPDSEKGYAPIIRGTAHSNALVVVRQNGYVIYQNTVAPGAFEINDLYPTGSSG  321
            L SD++M+P SE+ +AP++RG A+++A V V+QNGY IY+ TVAPG+F + DL  T+SSG
Sbjct  259  LASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSG  318

Query  322  DLQVTVKETDGSERHFVVPYASVPVLQREKHLKYSVTAGRYRSYDKDVEKTPFAQGSAIY  381
            DL+VTV E+DGS + FVVPY + ++  ++  LKYS+ AGRYRS D   +K+ +AQ++ +Y
Sbjct  319  DLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATLMY  378

Query  382  GLPYGFTAYGGVQQSSHYQSQALGTGKNFGDLGAFSVDVTRakallkkqqaSKGQSWRLR  441
            GLP  +TAYGG+Q ++HYQ+ +LG G ++G  G++SVD + + +  + +   +G SWRLR
Sbjct  379  GLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLR  438

Query  442  YSKDFAGTGTNFALAGYRYNSKGFYTLEDTMESYTRADD--WSAPQQRRARTEATIDQTL  499
            YS+++++TGTN+ L+  +Y S+G+ TL D ++SY + ++  WS  ++ ++ + +T+   L
Sbjct  439  YSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQPSSRTTL--ML  496

Query  500  GEGWGSF--TLSLV-KETYWNQGQDMTSMSVSYNNSWKGITYSMSYSLNKNTNSRDDEGD  556
            +++WG     LSL+   T W   ++  +   SY  SW     + S SLN N N      +
Sbjct  497  SQSWGRHLGNLSLIGSRTDW---RNRPGHDDSYGLSWGTSIGGGSLSLNWNQNRTLWRNG  553

Query  557  SVSNDNLFALSVSVPLDRW----MSNTWASYNMNNNKDGTTHTLGLNGTALEENNLNWNV  612
            +  ++N+ +L  S+PL RW    +S +W     + + +G T+ +G+NG A+ + +L+W+V
Sbjct  554  GHRKENITSLWFSMPLSRWTGNNVSASWQM--TSPSHGGQTQQVGVNGEAFSQ-QLDWEV  610

Query  613  QEGY---DSSENGTSTSLNADYKATYGEVSGGFSQDKYQRTTNVGLQGGMIAHANGLTLS  669
            +++Y    ++  G +++L+   +++YG ++G++S  +  R   V + GG++ H +G+TL+
Sbjct  611  RQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVTLG  670

Query  670  QPLGETIALVKAPGASGTHIANQTGVETDFRGYTVVPFVTAYRHNTISLDTETLPDEADV  729
            QPL  ++ALV APGASG  ++   GV TDFRG T V  ++ Y++NT+SLD   LPD+A+V
Sbjct  671  QPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLDPSQLPDDAEV  730

Query  730  THASQIVTPTRGAVVRASFNTRVGHRVLMTLTH-NGKPLPFGATVTTEDKDSEF-IVGTD  787
            T++   V PT GAVV A F+TR+G R LMTL + +G ++PFGA V  +++D+   +V+TD
Sbjct  731  TQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQDGSADLVDTD  790

Query  788  GQTYLSGMPDRGKLSVSWGQEASDHCVAEYTLTDEK  823
            +Q YL+G++D+G L+V WG   +++C  +Y L  +K
Sbjct  791  SQVYLTGLADKGELTVKWG---AQQCRVNYHLPAHK  823

73) ECENHK_08570 in NC_018405


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  500 bits (1884),  Expect = 2e-142, Method: Compositional matrix adjust.
 Identities = 347/846 (42%), Positives = 580/846 (69%), Gaps = 46/846 (5%)

Query  25   SLSHPACAREY-FNPALLGIDGPGKDISDLSAFEEGVGQMPGTYRVDVLVNQTLTGTHDI  83
            ++ H A A+ Y F++++LG  +++K++ D+S F++GV Q PGTYRVDV+VN    +T+D+
Sbjct  14   GVVHCANAHTYTFDASMLG--DAAKGV-DMSLFNQGV-QQPGTYRVDVMVNGKRVDTRDV  69

Query  84   EFSMQKDSHGQTSLQPCISVEMLRDFGVRTEQFPQL----TGENHCANLAAIPNAATQFV  139
             F ++KD++G   L +C++V  L  +GV+TE++PQL       ++CA+L+AIP+A + + 
Sbjct  70   VFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTAIPQAKAVLD  129

Query  140  FNKQQLLLSIPQAAMNNQARGYVAPERLDEGINALLLNYSFTGGNTQARHSDMTDSDSYY  199
            +N+QQL LSIPQ A+  + +G  + +  D+GI A+L+NYS    +T+ +   +   +S  
Sbjct  130  INNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRDNSSW  189

Query  200  LNLRPGLNIGPWRVRNYSTWSRNTSGNSTQNNWDSAYTYAQRNIIALKSQLTLGESNSPS  259
            ++L+PG+NIG+WRVRN ++W R++       +W++AYTYA+R + +LKS+LTLG+  S +
Sbjct  190  VQLQPGINIGAWRVRNATSWQRSSQ---LSGKWQAAYTYAERGLYSLKSRLTLGQKTSQG  246

Query  260  DLFDSVPFRGAQLASDDDMLPDSLRGYAPVVRGIARTNAQVIIKQNGYTIYQSYVSPGAF  319
            ++FDSVPF G  LASDD+M+P S R +APVVRGIART+A+V +KQNGYTIY++ V+PG+F
Sbjct  247  EIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPF  306

Query  320  EITDMYPTGSSGDLDVTIKEADGSEQHQLVPFASLPVLQREGRLKYSLTSGQYRPYDSAV  379
             + D+  T+SSGDL+VT+ EADGS Q  +VP+ + ++  ++G LKYSL +G+YR+ DSA 
Sbjct  307  ALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSAT  366

Query  380  DKTFFTQGSAIYGLPAGFTAYGGGQLSQHYQSLLVGIGKNFGGLGAVSVDGTQAWSTQQD  439
            DK+ ++Q++ +YGLP  +TAYGG Q + HYQ+  +G+G ++G  G++SVDG+++ S +Q+
Sbjct  367  DKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQG  426

Query  440  QEKAIGQSMRVRYSKNILETGTNIAIsgyrystsgyytLQEVLDTWRDS-----NWQDNT  494
            +    G S R+RYS+++  TGTN+ ++  +Y++ GY TL +VLD+ R++     +W++N 
Sbjct  427  EAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENL  486

Query  495  ERRRNRAEILLNQNLWEGA-GSISLNAISEDYWNSDRTMRSIGAGYSNSWN--------G  545
            +   +R+ ++L+Q+ W    G++SL +   D W   R   + + +Y+ SW         +
Sbjct  487  Q-PSSRTTLMLSQS-WGRHLGNLSLIGSRTD-W---RNRPGHDDSYGLSWGTSIGGGSLS  540

Query  546  ITWSLNYSFNRNTTDARDSDTVYSEDQVFSMSISVPLDRWLSSS-RATYNLNTSKHGSTS  604
            + W+ N ++ RN  + +++        + S+ +S+PL RW +++  A+ ++ ++ HG+ +
Sbjct  541  LNWNQNRTLWRNGGHRKEN--------ITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQT  592

Query  605  HTVGLNGTALQDQNLNWSVQES---ETNHDGGNGGSASLDYQGTYARMNSAYSYDHDQRR  661
            + VG+NG A+  Q+L+W V++S   ++  +GGN ++  L  +G+Y+ + + YSY +  R+
Sbjct  593  QQVGVNGEAF-SQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQ  651

Query  662  VNYGISGGVVAHANGITLSQELGETVALVEAPGASGVDITNQTGVSTDFRGYTVVPFISP  721
            +   I+GG+V H +G+TL+Q L  +VALVEAPGASGV +    GV TDFRG T V  +S 
Sbjct  652  MGVNIAGGIVIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSV  711

Query  722  YRENTLSLNTEQLPDDADVELSAKTVTPTRGAIVRAHFDTRVGKRVLMTLTRRDGRPVPF  781
            Y+ENT+SL+  QLPDDA+V  +   V PT GA+V A F+TR+G R LMTL R DG ++PF
Sbjct  712  YQENTVSLDPSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPF  771

Query  782  GAIVTDDKNAKTTSIVGDGGQVYLAGMSLQGSATVKWGANKQCHTRWQLPESTSSSAIVE  841
            GA V  + +  ++ +V+ ++QVYL+G++ +G  TVKWGA +QC+   +LP   + +++ +
Sbjct  772  GAQVIVNGQDGSADLVDTDSQVYLTGLADKGELTVKWGA-QQCRVNYHLPAHKGIAGLYQ  830

Query  842  VNASCR  847
            +++ CR
Sbjct  831  MSGLCR  836

74) lpfC in NC_013282


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  500 bits (1884),  Expect = 2e-142, Method: Compositional matrix adjust.
 Identities = 333/830 (41%), Positives = 546/830 (66%), Gaps = 39/830 (4%)

Query  39   FNPALLDIDNPGQEKTDLTLYEKGPGLAPGKYRVDIYVNNNRIDTREVTFTLATAADGSS  98
            F++++L+    G    D++L+++G    PG YRVD+ VN +R+DTR+V F L   ++G++
Sbjct  26   FDASMLGDAAKG---VDMSLFNQGVQ-QPGTYRVDVMVNGKRVDTRDVVFKLEKDGQGTP  81

Query  99   ALQPCLTVDDLKSFGVQTDRFDAL----RTPAQCADLSVIPSASARFNVSRQQLQLSIPQ  154
             L +CLTV +L  +GV+T+ +  L    +TP +CADL+ IP A A ++++ QQLQLSIPQ
Sbjct  82   FLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTAIPQAKAVLDINNQQLQLSIPQ  141

Query  155  SALGEVPRGYIPPDEFNEGINALLLNYSVNGTR---QKALTPDTQDSRDLYANLRPGINI  211
             AL    +G  P D  ++GI A+L+NYS   T+   +  +    + S+    +L+PGINI
Sbjct  142  LALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRDNSSW---VQLQPGINI  198

Query  212  GPWRLRNYSTWRRAENSTGTEQDFSSVYTYAQRDVVSLKSALTLGQSSSPADVFDSIPFT  271
            G+WR+RN ++W+R+ + +G      + YTYA+R++ SLKS LTLGQ +S +++FDS+PFT
Sbjct  199  GAWRVRNATSWQRSSQLSGK---WQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFT  255

Query  272  GAQLASDDDMLPDGLRGYAPIVRGIARSNAQVIIRQNGYVISQNNVAPGAFEINDLYPSG  331
            G  LASDD+M+P + R +AP+VRGIAR++A+V ++QNGY I +  VAPG+F + DL  ++
Sbjct  256  GVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTD  315

Query  332  SSGDLNVTVKESDGSEQHFAVPYASVPVLQREGRLKYSLTGGRYRSYDDEVLPTPFIQGA  391
            SSGDL+VTV E+DGS Q F VPY + ++  ++G LKYSL +GRYRS D     + + Q++
Sbjct  316  SSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQAT  375

Query  392  AIYGLPHGFTLYGGIQASEPYHALAVGVGENLGTFGALSLDMTQATSTLALGDKQTGRSW  451
             +YGLP  +T YGGIQ++  Y+A ++G+G +LG  G+LS+D +++ S       Q G SW
Sbjct  376  LMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASW  435

Query  452  RARYSKDIPLTGATLSVAGYRFSSENYYGMQEVFDALRSDNQ----WENPLRRRHRAELT  507
            R RYS+++  TG+ L ++  +++S+ Y  + +V+D+ R + +    W + L+   R+ L 
Sbjct  436  RLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQPSSRTTLM  495

Query  508  LEQPLGDTLGSLNVSLLKENYWDSRQAMASLSVGYSNSWHGINYGLNYSLNRNTTGYNDD  567
            L Q+ G  LG+L++   + + W +R +      +Y+ SW     G + SLN+N       
Sbjct  496  LSQSWGRHLGNLSLIGSRTD-WRNRPGHDD---SYGLSWGTSIGGGSLSLNWNQNRTLWR  551

Query  568  ESTRQNDSVLSLTLSVPLDRW----LPDTWASYNQNHSKQGTTQNLGLSGTALAGNNLNW  623
            ++ ++++++ SL +S+PL RW    ++ +W   + +H+  G TQ++G++G A++ ++L+W
Sbjct  552  NGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHG--GQTQQVGVNGEAFS-QQLDW  608

Query  624  NIQQS---HDSQGQADNTTLNADYKGAFGELSAGYGQDSSQRQIHYGLQGGIIAHAHGVT  680
            +++QS   + + G ++N++L+   +GA+G L+++Y+   + RQ+   + GGI+ H HGVT
Sbjct  609  EVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVT  668

Query  681  LGQPMGETVALVEAPGANGTAIANQTGLATDGRGYTIVPFVSPYRRNAIALDTETLPADA  740
            LGQP+  +VALVEAPGA+G +++   G+ TD RG T V  +S Y+ N+++LD   LP DA
Sbjct  669  LGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLDPSQLPDDA  728

Query  741  DVTQAVQSVTPTRGAIVRARFDTRTGARALMTLLRADGHPVPFGatatdadatdaF-IVG  799
            +VTQ+   V PT GA+V A+F+TR GARALMTL R DG ++PFGA     +  ++  +V+
Sbjct  729  EVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQDGSADLVD  788

Query  800  EDGQVYLTGLKPQGTLQVSWGKNASQHCVAAWQLPSVNAATPFITLSAQC  849
             D+QVYLTGL  +G L V WG   +Q+C    +LP+ ++ + +  +S+ C
Sbjct  789  TDSQVYLTGLADKGELTVKWG---AQQCRVNYHLPAHKGIAGLYQMSGLC  835

75) CFSAN001992_05635 in NC_020307


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  500 bits (1884),  Expect = 2e-142, Method: Compositional matrix adjust.
 Identities = 336/827 (41%), Positives = 548/827 (67%), Gaps = 28/827 (3%)

Query  37   FNPALLGIDGPGKELTDLSAFEEGIGQMPGTYRVDVIVNKSSAGVHDVNFVMQKDTAGNT  96
            F++++LG  + G    D+S F++G+ Q PGTYRVDV+VN    + +DV F ++KD  G  
Sbjct  26   FDASMLGDAAKG---VDMSLFNQGV-QQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQGTP  81

Query  97   TLQPCFSVDSLREFGIRTDAFPNL----AGHGDCANLAAIPQASAEFAFERQQLRLSIPQ  152
             L +C++V  L  +G++T+ +P+L       ++CA+L+AIPQA A + ++ QQL+LSIPQ
Sbjct  82   FLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTAIPQAKAVLDINNQQLQLSIPQ  141

Query  153  AAVDSHARGYVAPERLDEGINALLLNYSFSGANTEARRGDMTDSDSYYLSLRPGLNIGPW  212
             A+ ++ +G  + +  D+GI A+L+NYS   ++T+ + + +   +S  + L+PG+NIG+W
Sbjct  142  LALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRDNSSWVQLQPGINIGAW  201

Query  213  RIRNYSTWNRNVNGDSADESWDSLYTYAQRNIIALKSQLTFGDSTAPSELFDSVPFRGAQ  272
            R+RN ++W+R+ +       W++ YTYA+R + +LKS+LT+G+ T+ +E+FDSVPF G  
Sbjct  202  RVRNATSWQRSSQ---LSGKWQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTGVM  258

Query  273  LASDDDMLPDSLRGYAPVVRGIARTNAQVIIKQNGYTIYQSYVSPGAFEITDMYPTGSSG  332
            LASDD+M+P S R +APVVRGIART+A+V +KQNGYTIY++ V+PG+F + D+  T+SSG
Sbjct  259  LASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSG  318

Query  333  DLDVTIKEADGSEQHQTVAFASLPILQREGRLKYSVTSGQYRPYESDIDKKMFTQATLIY  392
            DL+VT+ EADGS Q   V++ + +I  ++G LKYS+ +G+YR+ +S  DK  ++QATL+Y
Sbjct  319  DLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATLMY  378

Query  393  GLPAGFTVYGGGQFSQHYKSLLTGLGKNLGELGAVSVDGTQAWSTQKDQDKESGQSWRIR  452
            GLP  +T YGG Q + HY++   GLG +LG  G++SVDG+++ S ++++  + G SWR+R
Sbjct  379  GLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLR  438

Query  453  YSKNILETGTNisisgyrystsgyytLPEVLDTWRDDESQ----NNNDRRRNRAELQLNQ  508
            YS+++  TGTN+ ++  +Y++ GY TL++VLD+ R++ ++     +N +  +R+ L L+Q
Sbjct  439  YSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQPSSRTTLMLSQ  498

Query  509  SIGASLGSLSLNAISEDYWNSDRKMRSLGVGYSNSWGGVTYNINYSYNRNttdsddsdKI  568
            S G  LG+LSL +   D W   R+  + + +Y+ SWG      + S N+N   +   +  
Sbjct  499  SWGRHLGNLSLIGSRTD-W---RNRPGHDDSYGLSWGTSIGGGSLSLNWNQNRTLWRNGG  554

Query  569  YDEDQVFSLSINIPLDRWLSHSY-ATYNLNTSKRGNTNHTVGLNGSALEDNNLNWSLQQS  627
               +++ SL +++PL RW +++  A+ ++ ++ +G   + VG+NG A+ + +L+W ++QS
Sbjct  555  HRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGEAFSQ-QLDWEVRQS  613

Query  628  ---ETNHGEGNGGYASLDYQGAYARMNGAYSYDNDQKRVNYGMEGGIVAHAHGVTLSQSL  684
               ++  G GN +   L  +GAY+ + G YSY    +++   + GGIV H HGVTL+Q+L
Sbjct  614  YRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQPL  673

Query  685  GETSALVEAPGANGVTISNQTGVKTDFRGYTVVPYVTPYRETAVSLDTETLPDGADVDLT  744
              + ALVEAPGA+GV ++   GVKTDFRG T V  ++ Y+E +VSLD   LPD+A+V  T
Sbjct  674  QGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLDPSQLPDDAEVTQT  733

Query  745  SQMITPTRGAIVRAHFDTRIGKRVLMNLSRTPTEIVPFGALATIEGQPADKSFIVGDHGQ  804
               + PT GA+V A F+TRIG R LM L R     +PFGA   ++GQ +    +V+ ++Q
Sbjct  734  DVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQDGSAD-LVDTDSQ  792

Query  805  VYLTGAPERGTLKVTWGRTANDTCHVTFNLTELNATDGVMETQESCR  851
            VYLTG +++G L V WG    + C+V ++L   ++  G+ +    CR
Sbjct  793  VYLTGLADKGELTVKWG---AQQCRVNYHLPAHKGIAGLYQMSGLCR  836

76) SeSA_A1271 in NC_011094


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  500 bits (1884),  Expect = 2e-142, Method: Compositional matrix adjust.
 Identities = 336/827 (41%), Positives = 548/827 (67%), Gaps = 28/827 (3%)

Query  37   FNPALLGIDGPGKELTDLSAFEEGIGQMPGTYRVDVIVNKSSAGVHDVNFVMQKDTAGNT  96
            F++++LG  + G    D+S F++G+ Q PGTYRVDV+VN    + +DV F ++KD  G  
Sbjct  26   FDASMLGDAAKG---VDMSLFNQGV-QQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQGTP  81

Query  97   TLQPCFSVDSLREFGIRTDAFPNL----AGHGDCANLAAIPQASAEFAFERQQLRLSIPQ  152
             L +C++V  L  +G++T+ +P+L       ++CA+L+AIPQA A + ++ QQL+LSIPQ
Sbjct  82   FLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTAIPQAKAVLDINNQQLQLSIPQ  141

Query  153  AAVDSHARGYVAPERLDEGINALLLNYSFSGANTEARRGDMTDSDSYYLSLRPGLNIGPW  212
             A+ ++ +G  + +  D+GI A+L+NYS   ++T+ + + +   +S  + L+PG+NIG+W
Sbjct  142  LALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRDNSSWVQLQPGINIGAW  201

Query  213  RIRNYSTWNRNVNGDSADESWDSLYTYAQRNIIALKSQLTFGDSTAPSELFDSVPFRGAQ  272
            R+RN ++W+R+ +       W++ YTYA+R + +LKS+LT+G+ T+ +E+FDSVPF G  
Sbjct  202  RVRNATSWQRSSQ---LSGKWQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTGVM  258

Query  273  LASDDDMLPDSLRGYAPVVRGIARTNAQVIIKQNGYTIYQSYVSPGAFEITDMYPTGSSG  332
            LASDD+M+P S R +APVVRGIART+A+V +KQNGYTIY++ V+PG+F + D+  T+SSG
Sbjct  259  LASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSG  318

Query  333  DLDVTIKEADGSEQHQTVAFASLPILQREGRLKYSVTSGQYRPYESDIDKKMFTQATLIY  392
            DL+VT+ EADGS Q   V++ + +I  ++G LKYS+ +G+YR+ +S  DK  ++QATL+Y
Sbjct  319  DLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATLMY  378

Query  393  GLPAGFTVYGGGQFSQHYKSLLTGLGKNLGELGAVSVDGTQAWSTQKDQDKESGQSWRIR  452
            GLP  +T YGG Q + HY++   GLG +LG  G++SVDG+++ S ++++  + G SWR+R
Sbjct  379  GLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLR  438

Query  453  YSKNILETGTNisisgyrystsgyytLPEVLDTWRDDESQ----NNNDRRRNRAELQLNQ  508
            YS+++  TGTN+ ++  +Y++ GY TL++VLD+ R++ ++     +N +  +R+ L L+Q
Sbjct  439  YSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQPSSRTTLMLSQ  498

Query  509  SIGASLGSLSLNAISEDYWNSDRKMRSLGVGYSNSWGGVTYNINYSYNRNttdsddsdKI  568
            S G  LG+LSL +   D W   R+  + + +Y+ SWG      + S N+N   +   +  
Sbjct  499  SWGRHLGNLSLIGSRTD-W---RNRPGHDDSYGLSWGTSIGGGSLSLNWNQNRTLWRNGG  554

Query  569  YDEDQVFSLSINIPLDRWLSHSY-ATYNLNTSKRGNTNHTVGLNGSALEDNNLNWSLQQS  627
               +++ SL +++PL RW +++  A+ ++ ++ +G   + VG+NG A+ + +L+W ++QS
Sbjct  555  HRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGEAFSQ-QLDWEVRQS  613

Query  628  ---ETNHGEGNGGYASLDYQGAYARMNGAYSYDNDQKRVNYGMEGGIVAHAHGVTLSQSL  684
               ++  G GN +   L  +GAY+ + G YSY    +++   + GGIV H HGVTL+Q+L
Sbjct  614  YRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQPL  673

Query  685  GETSALVEAPGANGVTISNQTGVKTDFRGYTVVPYVTPYRETAVSLDTETLPDGADVDLT  744
              + ALVEAPGA+GV ++   GVKTDFRG T V  ++ Y+E +VSLD   LPD+A+V  T
Sbjct  674  QGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLDPSQLPDDAEVTQT  733

Query  745  SQMITPTRGAIVRAHFDTRIGKRVLMNLSRTPTEIVPFGALATIEGQPADKSFIVGDHGQ  804
               + PT GA+V A F+TRIG R LM L R     +PFGA   ++GQ +    +V+ ++Q
Sbjct  734  DVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQDGSAD-LVDTDSQ  792

Query  805  VYLTGAPERGTLKVTWGRTANDTCHVTFNLTELNATDGVMETQESCR  851
            VYLTG +++G L V WG    + C+V ++L   ++  G+ +    CR
Sbjct  793  VYLTGLADKGELTVKWG---AQQCRVNYHLPAHKGIAGLYQMSGLCR  836

77) psaC in NC_017160


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  491 bits (1853),  Expect = 5e-140, Method: Compositional matrix adjust.
 Identities = 309/694 (45%), Positives = 492/694 (71%), Gaps = 24/694 (3%)

Query  6    VQFTTITLLMSTSFLV---GAQRYSFDPNLLVDGNNNTDTSLFEQGNELPGTYLVDIILN  62
            ++F   +LL+  + +V    A+ Y+FD+++L D+ +  D SLF+QG + PGTY VD+++N
Sbjct  1    MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN  60

Query  63   GNKVDSTNVTFHSEKSPSGEPFLQSCLTKEQLSRYGVDVDAYPELSPALKNSQTNPCVNL  122
            G++VD+ +V F  EK   G PFL SCLT  QLSRYGV  + YP+L  A K +  + C +L
Sbjct  61   GKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTP--DECADL  118

Query  123  AAIPQASEEFQFYNMQLVLSIPQAALRPE--GEVPIERWDDGITAFLLNYMANISETQFR  180
            +AIPQA   +++ N QL LSIPQ ALRPE  G  P + WDDGI AFL+NY A  ++T+++
Sbjct  119  TAIPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYK  178

Query  181  QN-GGYRRSQYIQLYPGLNLGAWRVRNATNWSQSGDRGGKWQSAYTYATRGIYRLKSRVT  239
             +  G   S  +QL PG+N+GAWRVRNAT+W +S++ +GKWQ+AYTYA RG+Y LKSR+T
Sbjct  179  MDMVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLKSRLT  238

Query  240  LGESYTPGDFFDSIPFRGVMLGDDPNMQPSNQRDFIPVVRGIARSQAQVEIRQNGYLIYS  299
            LG+  + G++FDS+PF GVML+ D NM P ++R+F PVVRGIAR+QA+VE++QNGY IY+
Sbjct  239  LGQKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYN  298

Query  300  TVVPPGPFELSDVIPSKSGSDLHVRVLESNGASQAFIVPYEVPAIALRKGHLRYNLVAGQ  359
            T V+PGPF L D+  + S++DLHV V E++G++Q F+VPY+ PAIAL++G L+Y+L+AG+
Sbjct  299  TTVAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGR  358

Query  360  YRPANADVETPPVAQATVAYGLPWNLTAFIGEQWSRHYQATsaglggllgeygalsssIT  419
            YR++++  + + +AQAT+ YGLPWNLTA+ G Q + HYQA+S GLGG LG  G+LS   +
Sbjct  359  YRSSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGS  418

Query  420  QATSQYHHQQPVKGQAWEVRYNKTLQASDTSFSLVNSQYSTNGFSTLSDVLQSYRQSGSG  479
            ++ SQ + +   +G +W +RY++ L A++T++ L   QY+++G++TLSDVL+SYR++G+ 
Sbjct  419  DTHSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNR  478

Query  480  --DNRDKIDENSRSRDLRNQISAVIGQSLGKFGYLNLNWSRQVYRGPIPAKNSLGIHYNL  537
                R++++ +SR+  + +Q     G+ LG+++ +    SR   R      +S G+    
Sbjct  479  LWSWRENLQPSSRTTLMLSQSW---GRHLGNLSLIG---SRTDWRNRPGHDDSYGLSWGT  532

Query  538  NVGNSFWALSWVQN-----ANENKNDRILSLSVSIPLG--GHHDTYASYRMTS-SNGSND  589
            ++G +  +L+W QN        ++++ I SL  S+PL+    ++  AS +MTS S+G++ 
Sbjct  533  SIGGGSLSLNWNQNRTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQT  592

Query  590  HEIGMYGQAFDSRLSWSVRQAEHYGQPNSGHNSGSLRLGWQGSYGNIAGNYYYTPSIRQL  649
            +++G+ G+AF  +L W VRQ+ + + P +G N+++L+L+W+G+YG ++G+Y Y+ ++RQ+
Sbjct  593  QQVGVNGEAFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQM  652

Query  650  SADVSGGAIIHRHGLTLGPQINGTSVLVEVPGVG  683
            + +++GG +IH+HG+TLG  ++G+  LVE PG +
Sbjct  653  GVNIAGGIVIHHHGVTLGQPLQGSVALVEAPGAS  686

78) ES15_2634 in NC_017933


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  481 bits (1814),  Expect = 8e-137, Method: Compositional matrix adjust.
 Identities = 344/835 (42%), Positives = 550/835 (66%), Gaps = 36/835 (4%)

Query  3    ARADDY-FNPALLDIDNPSQGKTDLTLYEKGPGAAPGKYRVDVYINNERIDTREIEFTLK  61
            A A+ Y F++++L+  ++++G  D++L+++G    PG YRVDV +N  R+DTR++ F L 
Sbjct  19   ANAHTYTFDASMLG--DAAKG-VDMSLFNQGV-QQPGTYRVDVMVNGKRVDTRDVVFKLE  74

Query  62   TASDGSSTLQPCFTLEDLKSLGVKTDEFDALDADAK----CVDLSAIPSASARFDVGRqq  117
              ++G++ L +C+T+ +L   GVKT+++  L   AK    C DL+AIP A A +D+  QQ
Sbjct  75   KDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTAIPQAKAVLDINNQQ  134

Query  118  lqlsiaqsalgqVPQGYIPPEEFNEGINALLFNYSVNDSRQK-ALTPDAQDSRNLYANLR  176
            LQLSI+Q AL    +G  P +  ++GI A+L NYS   ++    +   ++D+ +   +L+
Sbjct  135  LQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRDNSS-WVQLQ  193

Query  177  PGINLGPWRLRNYSTWSRNEDHSGTQEKFSSVYTYAERDIVALKSELTLGQSSSPADVFD  236
            PGIN+G+WR+RN ++W R+ + SG   K  + YTYAER++ +LKS LTLGQ +S +++FD
Sbjct  194  PGINIGAWRVRNATSWQRSSQLSG---KWQAAYTYAERGLYSLKSRLTLGQKTSQGEIFD  250

Query  237  SIPFTGAQLASDDDMLPDSLRGYAPVVHGIARSNAQVIIRQNGYLISQTNVAPGAFEIND  296
            S+PFTG  LASDD+M+P S R +APVV+GIAR++A+V ++QNGY I +T VAPG+F + D
Sbjct  251  SVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRD  310

Query  297  LYPSGSSGDLNVTVKESDGSEQHFVVPYASVPVLQREGRLKYSLTGGRYRSYDESVLPTA  356
            L  ++SSGDL+VTV E+DGS Q FVVPY + ++  ++G LKYSL +GRYRS D +   + 
Sbjct  311  LSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQ  370

Query  357  FMQGTAVYGLPHGFTLYGGIQASQPYHSLALGVGENVGDFGAFSLDVTEAKATLSSGETQ  416
            + Q+T +YGLP  +T YGGIQ++  Y++ +LG+G ++G  G++S+D +++ +   +   Q
Sbjct  371  IAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQ  430

Query  417  KGRSWRARYSKDIALTGATLSVAGYRFSSENYYAMQDVFDTMRRDNQ----WADTLHRRS  472
            +G SWR RYS++++ TG+ L ++  +++S+ Y ++ DV+D+ R++ +    W + L+  S
Sbjct  431  QGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQPSS  490

Query  473  REELTLEQPLGDALGSLNASLIQENYWNSSKTMSSLSVGYNNSWHDISYGLNYSLNRNTS  532
            R  L L Q+ G  LG+L  SLI        +  ++   +Y  SW     G + SLN+N +
Sbjct  491  RTTLMLSQSWGRHLGNL--SLIGSR--TDWRNRPGHDDSYGLSWGTSIGGGSLSLNWNQN  546

Query  533  ENGYGEPEHEKDSVFSLTLSIPLERW----LPNTWASYNQSHSKQGTTQNIGLNGTALSD  588
                 +  H K+++ SL +S+PL RW    ++ +W   + SH+  G TQ++G+NG A+S+
Sbjct  547  RTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHG--GQTQQVGVNGEAFSQ  604

Query  589  NNLNWNIQQS---QDSQGQTRNTSLNADYKGAYGELSAGYGQDVSQRQIHYGIQGGLIAH  645
             +L+W+++QS   + + G   N++L+   +GAYG L+++Y+   + RQ+   I GG++ H
Sbjct  605  -QLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGIVIH  663

Query  646  ANGITLGQPMGETVALVEAPGANDTAIHNQTGVRTDGRGYTILPFISPYRRNTVALDTET  705
             +G+TLGQP+  +VALVEAPGA++ ++    GV+TD RG T +  +S Y+ NTV+LD   
Sbjct  664  HHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLDPSQ  723

Query  706  LPADADVTQAVQTVTPTRGAVVRARFDTRTGARVLMTLHLADGRPVPFGatataddtaEE  765
            LP DA+VTQ+   V PT GAVV A+F+TR GAR LMTL   DG ++PFGA    ++    
Sbjct  724  LPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQDGS  783

Query  766  F-IVGEDGQVYLTGLQPKGTLQVSWGANASQRCTAAWRLPTGNGDSQFINLSAQC  819
              +V+ D+QVYLTGL  KG L V WGA   Q+C    +LP+ +G + + ++S+ C
Sbjct  784  ADLVDTDSQVYLTGLADKGELTVKWGA---QQCRVNYHLPAHKGIAGLYQMSGLC  835

79) ESA_02540 in NC_009778


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  480 bits (1809),  Expect = 2e-136, Method: Compositional matrix adjust.
 Identities = 343/835 (42%), Positives = 550/835 (66%), Gaps = 36/835 (4%)

Query  3    ARADDY-FNPALLDIDNPSQGKTDLTLYEKGPGAAPGKYRVDVYINNERIDTREIEFTLK  61
            A A+ Y F++++L+  ++++G  D++L+++G    PG YRVDV +N  R+DTR++ F L 
Sbjct  19   ANAHTYTFDASMLG--DAAKG-VDMSLFNQGV-QQPGTYRVDVMVNGKRVDTRDVVFKLE  74

Query  62   TASDGSSTLQPCFTLEDLKSLGVKTDEFDALDADAK----CVDLSAIPSASARFDVGRqq  117
              ++G++ L +C+T+ +L   GVKT+++  L   AK    C DL+AIP A A +D+  QQ
Sbjct  75   KDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTAIPQAKAVLDINNQQ  134

Query  118  lqlsiaqsalgqVPQGYIPPEEFNEGINALLFNYSVNGSRQK-ALTPDAQDSRNLYANLR  176
            LQLSI+Q AL    +G  P +  ++GI A+L NYS   ++    +   ++D+ +   +L+
Sbjct  135  LQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRDNSS-WVQLQ  193

Query  177  PGINLGPWRLRNYSTWSRNEDHSGTQEKFSSVYTYAERDIVALKSELTLGQSSSPADVFD  236
            PGIN+G+WR+RN ++W R+ + SG   K  + YTYAER++ +LKS LTLGQ +S +++FD
Sbjct  194  PGINIGAWRVRNATSWQRSSQLSG---KWQAAYTYAERGLYSLKSRLTLGQKTSQGEIFD  250

Query  237  SIPFTGAQLASDDDMLPDSLRGYAPVVHGIARSNAQVIIRQNGYLISQTNVAPGAFEIND  296
            S+PFTG  LASDD+M+P S R +APVV+GIAR++A+V ++QNGY I +T VAPG+F + D
Sbjct  251  SVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRD  310

Query  297  LYPSGSSGDLNVTVKESDGSEQHFVVPYASVPVLQREGRLKYSLTGGRYRSYDESVLSTA  356
            L  ++SSGDL+VTV E+DGS Q FVVPY + ++  ++G LKYSL +GRYRS D +   + 
Sbjct  311  LSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQ  370

Query  357  FMQGTAVYGLPHGFTLYGGIQASQPYHSLALGVGENVGDFGAFSLDVTEAKATLSSGETQ  416
            + Q+T +YGLP  +T YGGIQ++  Y++ +LG+G ++G  G++S+D +++ +   +   Q
Sbjct  371  IAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQ  430

Query  417  KGRSWRARYSKDIALTGATLSVAGYRFSSENYYAMQDVFETMRRDNQ----WADTLHRRS  472
            +G SWR RYS++++ TG+ L ++  +++S+ Y ++ DV+++ R++ +    W + L+  S
Sbjct  431  QGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQPSS  490

Query  473  REELTLEQPLGDALGSLNASLIQENYWNSSKTMSSLSVGYNNSWHDISYGLNYSLNRNTS  532
            R  L L Q+ G  LG+L  SLI        +  ++   +Y  SW     G + SLN+N +
Sbjct  491  RTTLMLSQSWGRHLGNL--SLIGSR--TDWRNRPGHDDSYGLSWGTSIGGGSLSLNWNQN  546

Query  533  ENGYGEPEHEKDSVFSLTLSIPLERW----LPNTWASYNQSHSKQGTTQNIGLNGTALSD  588
                 +  H K+++ SL +S+PL RW    ++ +W   + SH+  G TQ++G+NG A+S+
Sbjct  547  RTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHG--GQTQQVGVNGEAFSQ  604

Query  589  NNLNWNIQQS---QDSQGQTRNTSLNADYKGAYGELSAGYGQDFSQRQIHYGIQGGLIAH  645
             +L+W+++QS   + + G   N++L+   +GAYG L+++Y+   + RQ+   I GG++ H
Sbjct  605  -QLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGIVIH  663

Query  646  ANGITLGQPMGETVALVEAPGANDTAIHNQTGVRTDGRGYTILPFISPYRRNTVALDTET  705
             +G+TLGQP+  +VALVEAPGA++ ++    GV+TD RG T +  +S Y+ NTV+LD   
Sbjct  664  HHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLDPSQ  723

Query  706  LPADADVTQAVQTVTPTRGAVVRARFDTRTGARVLMTLHLADGRPVPFGatataddtaEE  765
            LP DA+VTQ+   V PT GAVV A+F+TR GAR LMTL   DG ++PFGA    ++    
Sbjct  724  LPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQDGS  783

Query  766  F-IVGEDGQVYLTGLQPKGTLQVSWGANASQRCTAAWRLPTGNGDSQFINLSAQC  819
              +V+ D+QVYLTGL  KG L V WGA   Q+C    +LP+ +G + + ++S+ C
Sbjct  784  ADLVDTDSQVYLTGLADKGELTVKWGA---QQCRVNYHLPAHKGIAGLYQMSGLC  835

80) Entcl_2157 in NC_014618


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  480 bits (1809),  Expect = 2e-136, Method: Compositional matrix adjust.
 Identities = 348/857 (41%), Positives = 563/857 (66%), Gaps = 45/857 (5%)

Query  9    RFRQSRLALGIALAISPPIPEAEGRDF-FNPALLELDNPAMKGADLSAFERGAQAPGIYH  67
            +F+Q+ L L     I+  +  A+++ + F++++L     A KG D+S F++G Q PG Y+
Sbjct  2    KFKQPALLL----FIAGVVHCANAHTYTFDASML---GDAAKGVDMSLFNQGVQQPGTYR  54

Query  68   VDIIIDEQLVDTRDIAFYVVKDDAGEPQLAPCLSVALLQSYGVKTAQFPGL----SVAGD  123
            VD++++ + VDTRD+ F + KD+ G P LA+CL+V+ L  YGVKT ++P L      +++
Sbjct  55   VDVMVNGKRVDTRDVVFKLEKDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDE  114

Query  124  CANFAAIPQASATFLFNTQKLRLSIPQAALSPAARGYVSPELWDEGINAAMLNYML-SGA  182
            CA+++AIPQA A + +N Q+L+LSIPQ AL P  +G  + +LWD+GI A ++NY   +  
Sbjct  115  CADLTAIPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQ  174

Query  183  SSWGRGDGGNSNGQYANLRPGINVGPWRLRNYTTWNRDSRGQDSWDTVYTYVQRNIIPLK  242
            +    +  G  N+   +L+PGIN+G+WR+RN T+W+R S+  + W++ YTY +R + +LK
Sbjct  175  TDYKMDMVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYSLK  234

Query  243  AQLTLGDSSAPADVFDSMPFRGGQLASDDNMLPESMKGYAPVVRGIARTHAQVVIRQNGY  302
            ++LTLG+ ++ +++FDS+PF G  LASDDNM+P S + +APVVRGIART+A+V ++QNGY
Sbjct  235  SRLTLGQKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGY  294

Query  303  TIYERYVAPGAFEINDMYSTGGSGDLDVTIKEADGSEQNFTVPYASLPVLQREGRLKYAV  362
            TIY+  VAPG+F + D+  T++SGDL+VT+ EADGS Q F VPY + ++  ++G LKY++
Sbjct  295  TIYNTTVAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSL  354

Query  363  TGGQYRSYDGRVDKTPFGQMTGIFGLPGGFTLYGGVQESAKYRAVAVGGGKNLGDVGAIS  422
             +G+YRS D+  DK+ ++Q T ++GLP  +T YGG+Q ++ Y+A ++G G +LG  G++S
Sbjct  355  LAGRYRSSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLS  414

Query  423  TDITEAWSHPEGQATQSGQSWRVRYSKNIVETGTHFAIagyryatrgyygMQEVLDS---  479
             D +++ S+ +G+A Q G SWR+RYS+++  TGT++ ++  +YA++GY  + +VLDS   
Sbjct  415  VDGSDTHSQRQGEAVQQGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRH  474

Query  480  -----WGDSSALNAQRRNRMELTLSQSLGARMGSLMMSTVREDYWQGGGPASSIGASYSN  534
                 W+    L  Q  +R  L LSQS G ++G+L +   R D W+     ++ + SY+ 
Sbjct  475  NGNRLWSWRENL--QPSSRTTLMLSQSWGRHLGNLSLIGSRTD-WRN---RPGHDDSYGL  528

Query  535  SWEGVSGG--ISWTWSKNGGGAGVNSGPTQEAEQLISVTVSIPLQRF----LSNSWASYA  588
            SW    GG  +S  W++N     +     +  E++ S+  S+PL R     +S SW    
Sbjct  529  SWGTSIGGGSLSLNWNQN---RTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQ--M  583

Query  589  LNAGRGGATQTLGLNGMALDGSALNWSVQQGYGSD---GVGYTGSANVDYRGTYAQASGG  645
             ++++GG TQ +G+NG A+ +  L+W V+Q+Y +D   G G  ++ ++   G+Y+  +G+
Sbjct  584  TSPSHGGQTQQVGVNGEAF-SQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGD  642

Query  646  YSYDRRSERLNYGLAGGILAHADGVTLSQPLGETNVLVKapgaagvgvnnqngvKTDFRG  705
            YSY R   ++   +AGGI+ H +GVTL+QPL  +  LV APGA+GV V    GVKTDFRG
Sbjct  643  YSYSRAMRQMGVNIAGGIVIHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRG  702

Query  706  YTVTSNVSPYRKNDIGLNAATLADDVELDLTNKTVVPTRGAVVRASYSASVGLRALLTLE  765
             T  +N+S Y+ N ++L+++ L+DD E+  T+  VVPT GAVV A + + +G RAL+TL 
Sbjct  703  DTTVGNLSVYQENTVSLDPSQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLK  762

Query  766  QTNRQPVPFGALVSAPGGEGRSAIVDEGGQVYLSGLAAQGQLNVVWGNAGGQRCQVRYAL  825
            + +  ++PFGA V   G +G + +VD ++QVYL+GLA +G+L V W   G+Q+C+V Y L
Sbjct  763  REDGSAIPFGAQVIVNGQDGSADLVDTDSQVYLTGLADKGELTVKW---GAQQCRVNYHL  819

Query  826  DSAAVVNGISLANYSCR  842
             +   + G+   +  CR
Sbjct  820  PAHKGIAGLYQMSGLCR  836

81) CSSP291_12035 in NC_020260


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  479 bits (1804),  Expect = 5e-136, Method: Compositional matrix adjust.
 Identities = 342/835 (41%), Positives = 551/835 (66%), Gaps = 36/835 (4%)

Query  3    ARADDY-FNPALLDIDNPSQGKTDLTLYEKGPGAAPGKYRVDIYINNERIDTREIEFTLK  61
            A A+ Y F++++L+  ++++G  D++L+++G    PG YRVD+ +N  R+DTR++ F L 
Sbjct  19   ANAHTYTFDASMLG--DAAKG-VDMSLFNQGV-QQPGTYRVDVMVNGKRVDTRDVVFKLE  74

Query  62   TASDGSSTLQPCFTLEDLKSLGVKTDEFDALDADAK----CVDLSAIPSASARFDVGRqq  117
              ++G++ L +C+T+ +L   GVKT+++  L   AK    C DL+AIP A A +D+  QQ
Sbjct  75   KDGQGTPFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTAIPQAKAVLDINNQQ  134

Query  118  lqlsiaqsalgqVPQGYIPPEEFNEGINALLFNYSVNGSRQK-ALTPDAQDSRNLYANLR  176
            LQLSI+Q AL    +G  P +  ++GI A+L NYS   ++    +   ++D+ +   +L+
Sbjct  135  LQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRDNSS-WVQLQ  193

Query  177  PGINLGPWRLRNYSTWSRNADHSGTQEKFSSVYTYAERDIVALKSELTLGQSSSPADVFD  236
            PGIN+G+WR+RN ++W R+++ SG   K  + YTYAER++ +LKS LTLGQ +S +++FD
Sbjct  194  PGINIGAWRVRNATSWQRSSQLSG---KWQAAYTYAERGLYSLKSRLTLGQKTSQGEIFD  250

Query  237  SIPFTGAQLASDDDMLPDSLRGYAPVVHGIARSNAQVIIRQNGYLISQTNVAPGAFEIND  296
            S+PFTG  LASDD+M+P S R +APVV+GIAR++A+V ++QNGY I +T VAPG+F + D
Sbjct  251  SVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRD  310

Query  297  LYPSGSSGDLNVTVKESDGSEQHFVVPYASVPVLQREGRLKYSLTGGRYRSYDESVLSTA  356
            L  ++SSGDL+VTV E+DGS Q FVVPY + ++  ++G LKYSL +GRYRS D +   + 
Sbjct  311  LSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQ  370

Query  357  FMQGTAVYGLPHGFTLYGGIQASQPYHSLALGVGENVGDFGAFSLDVTEAKATLSSGETQ  416
            + Q+T +YGLP  +T YGGIQ++  Y++ +LG+G ++G  G++S+D +++ +   +   Q
Sbjct  371  IAQATLMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQ  430

Query  417  KGRSWRARYSKDIALTGATLSVAGYRFSSENYYAMQDVFDTMRRDNQ----WADTLHRRS  472
            +G SWR RYS++++ TG+ L ++  +++S+ Y ++ DV+D+ R++ +    W + L+  S
Sbjct  431  QGASWRLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQPSS  490

Query  473  REELTLEQPLGDALGSLNASLIQENYWNSSKTMSSLSVGYNNSWHDISYGLNYSLNRNTS  532
            R  L L Q+ G  LG+L  SLI        +  ++   +Y  SW     G + SLN+N +
Sbjct  491  RTTLMLSQSWGRHLGNL--SLIGSR--TDWRNRPGHDDSYGLSWGTSIGGGSLSLNWNQN  546

Query  533  ENGYGEPEHEKDSVFSLTLSIPLERW----LPNTWASYNQSHSKQGTTQNIGLNGTALSD  588
                 +  H K+++ SL +S+PL RW    ++ +W   + SH+  G TQ++G+NG A+S+
Sbjct  547  RTLWRNGGHRKENITSLWFSMPLSRWTGNNVSASWQMTSPSHG--GQTQQVGVNGEAFSQ  604

Query  589  NNLNWNIQQS---QDSQGQMRNTSLNADYKGAYGELSAGYGQDFSQRQIHYGIQGGLIAH  645
             +L+W+++QS   + + G   N++L+   +GAYG L+++Y+   + RQ+   I GG++ H
Sbjct  605  -QLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGIVIH  663

Query  646  ANGITLGQPMGETVALVEAPGANDTAIHNQTGVRTDGRGYTILPFISPYRRNTVALDTET  705
             +G+TLGQP+  +VALVEAPGA++ ++    GV+TD RG T +  +S Y+ NTV+LD   
Sbjct  664  HHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLDPSQ  723

Query  706  LPADADVTQAVQTVTPTRGAVVRARFDTRTGARVLMTLHLADGRPVPFGatataddtaEE  765
            LP DA+VTQ+   V PT GAVV A+F+TR GAR LMTL   DG ++PFGA    ++    
Sbjct  724  LPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQDGS  783

Query  766  F-IVGENGQVYLTGLQPKGTLQVSWGANASQRCTAAWRLPTGNGDSQFINLSAQC  819
              +V+ ++QVYLTGL  KG L V WGA   Q+C    +LP+ +G + + ++S+ C
Sbjct  784  ADLVDTDSQVYLTGLADKGELTVKWGA---QQCRVNYHLPAHKGIAGLYQMSGLC  835

82) SARI_01797 in NC_010067


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  477 bits (1799),  Expect = 1e-135, Method: Compositional matrix adjust.
 Identities = 342/828 (42%), Positives = 560/828 (68%), Gaps = 38/828 (4%)

Query  1    MLGIDGPGKDITDLSAFEEGVGQMPGTYHVDVVINNAAQGTYDIPFSMQKNAQGQQSLQP  60
            MLG  + G    D+S F++GV Q PGTY+VDV++N    +T D+ F ++K++QG   L +
Sbjct  30   MLGDAAKG---VDMSLFNQGV-QQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQGTPFLAS  85

Query  61   CLSIDMLKSFRIRTELFPQL----VGDGQCAVLNAIPMASAEFDFNHQRLLLSIPQAAVS  116
            CL++  L  + ++TE +PQL       ++CA L AIP A A +D+N+Q+L LSIPQ A+ 
Sbjct  86   CLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTAIPQAKAVLDINNQQLQLSIPQLALR  145

Query  117  TMARGWVAPDRL-DEGINALLLNYTFTGGNTSARQSGNSDSDSYFLNLRPGLNLGPWRLR  175
               +G +AP+ L D+GI A+L+NY+    +T  +    +  +S  ++L+PG+N+G+WR+R
Sbjct  146  PEFKG-IAPEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRDNSSWVQLQPGINIGAWRVR  204

Query  176  NYSTWNQNKTGDTKEESWDSVYTYAQRDIIALKSQLTLGDSTAPSDMFDSVPFRGVQLAS  235
            N ++W+++     K   W++ YTYA+R++ +LKS+LTLG+ T+ +++FDSVPF GV LAS
Sbjct  205  NATSWQRSSQLSGK---WQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTGVMLAS  261

Query  236  DDDMLPESLRGYAPIIRGIARTNAQVSVKQNGYVIYQTYVSPGAFEIADMFPTGSSGDLD  295
            DD+M+P S R +AP++RGIART+A+V VKQNGY IY+T V+PG+F + D+  T+SSGDL+
Sbjct  262  DDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSGDLH  321

Query  296  VTIKETDGSEQHQVIPFASLPVLQREGRLKYSVTSGQYRPYDGDIDKEWFSQATAIYGLP  355
            VT+ E+DGS Q  V+P+ + ++  ++G LKYS+ +G+YR+ D+  DK  ++QAT +YGLP
Sbjct  322  VTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATLMYGLP  381

Query  356  AGFTLYGGGQFAQHYQSLLAGFGKNLGELGAFSVDGTQAWSTQQDTDKESGQSWRVRYSK  415
              +T YGG Q A HYQ+   G+G +LG  G++SVDG+++ S +Q+   + G SWR+RYS+
Sbjct  382  WNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLRYSN  441

Query  416  NMLATGTNisisgyrystsgyyslsETLDTWREN-----EWKTSNERRRNRAEIMLNQSL  470
            ++ ATGTN+ ++  +Y++ GY +LS+ LD+ R+N      W+ + +   +R+ +ML+QS 
Sbjct  442  QLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQ-PSSRTTLMLSQSW  500

Query  471  GDVAGSLSVNAVSEDYWNSDREMRSIGVGYSNSFSGITWNLNYSYNRNTTAGRDSDKVYS  530
            G   G+LS+ +   D +N   +  S G++ + S++G +  L+ + N+N T  R+++    
Sbjct  501  GRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGS--LSLNWNQNRTLWRNGGH--R  556

Query  531  EDQVFTLNFNIPLDCW----LSNSWASYSLNTSKRGDTSHTVGLNGTALENQNLNWSIQE  586
             +++ +L F++PL  W    +S SW    + ++ +G+ ++ VG+NG A+ +Q+L+W +++
Sbjct  557  KENITSLWFSMPLSRWTGNNVSASWQ---MTSPSHGGQTQQVGVNGEAF-SQQLDWEVRQ  612

Query  587  S---QTNHGQGNGGYANLDYQGTYARVNAGYGYDHDQRNLNYSIDGGIIAHAHGLTFSQS  643
            S   ++  G GN +  +L  +G+Y+ + ++Y+Y +  R++  +I GGI+ H HG+T++Q+
Sbjct  613  SYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQP  672

Query  644  LGETAALVEAPGVSGVEVTNQTGVKTDFRGYTVVPYLSPYRENTVGLNPETLPDDADLTL  703
            L  + ALVEAPG SGV V    GVKTDFRG T V  LS Y+ENTV+L+P  LPDDA++T 
Sbjct  673  LQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLDPSQLPDDAEVTQ  732

Query  704  TNQILTPTRGAIVRARFDTRVGKRVLMTLTRSNGKTVPFGAIVSVHGENQAQSFIVGDAG  763
            T+  + PT GA+V A+F+TR+G R LMTL R +G ++PFGA V V+G++ +  ++  D+ 
Sbjct  733  TDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQDGSADLVDTDS-  791

Query  764  QVYLTGMPLSGSLLAKWGNAASEICKVTFQLPEEDNTIGVMQTNARCN  811
            QVYLTG++  G L  KWG   ++ C+V ++LP +    G+ Q ++ C 
Sbjct  792  QVYLTGLADKGELTVKWG---AQQCRVNYHLPAHKGIAGLYQMSGLCR  836

83) A225_4163 in NC_018106


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  462 bits (1741),  Expect = 4e-131, Method: Compositional matrix adjust.
 Identities = 334/833 (41%), Positives = 561/833 (68%), Gaps = 37/833 (4%)

Query  33   VFNPALLEMDGPHTGVRDLSAYEQAGGQLPGTYRVDIYLNNVFMDTRDVVFQQSK-GPGI  91
             F++++L  +++  GV D+S ++Q G Q PGTYRVD+ +N   +DTRDVVF+  K G G 
Sbjct  25   TFDASML--GDAAKGV-DMSLFNQ-GVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQGT  80

Query  92   TELQPCLTVDDLAEWGVRVSQFPEL---GRRTPGCADISVIPQAKSDFRFSQQRLLLSFP  148
              L +CLTV +L+  GV+  ++P+L   ++    CAD++ IPQAK+ + +++Q+L LS+P
Sbjct  81   PFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTAIPQAKAVLDINNQQLQLSIP  140

Query  149  QAAVASAARGWVDPKQ-WDEGVPAILLNYSFSGANNWSRQNDAPDSDNQYVNLRPGINVG  207
            Q A+ +  +G + P + WD+G+PA+L+NYS   ++   + +     ++  V+L+PGIN+G
Sbjct  141  QLALRPEFKG-IAPEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRDNSSWVQLQPGINIG  199

Query  208  PWRLRNYTTWsrsssggessnsWDTVYTYAQRNIKSIQGVMTLGDSSTDADVFEGVPFRG  267
            +WR+RN T+W RSS  +     W++ YTYA+R + S+++ +TLG+ ++++++F++VPF G
Sbjct  200  AWRVRNATSWQRSSQLSGK---WQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTG  256

Query  268  AMLASDDDMLPESLRGYAPVVRGIARTNAQVIIRQNGYEIYQTYVAPGAFEITDMYPTGG  327
             MLASDD+M+P S R +APVVRGIART+A+V ++QNGY IY+T VAPG+F + D+  T++
Sbjct  257  VMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDS  316

Query  328  SGDLAVTIKEADGSEQNLIVPYASLPVLQREGRLKYSVTSGVYRAYDNSIDETPLTQATA  387
            SGDL VT+ EADGS Q ++VPY + ++  ++G LKYS+ +G YR+ D++ D + ++QAT 
Sbjct  317  SGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATL  376

Query  388  IYGLPWGLTLYGGGQFSSKYQSVALGMGKNLGELGAVSTDIIQAWSTRQDKDKESGQSVR  447
            +YGLPW LT YGG Q ++ YQ+ +LG+G +LG  G++S D  ++ S RQ+   + G S R
Sbjct  377  MYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWR  436

Query  448  LRYSKDLPGLGTNVSLAGYRYATSGYWDMQEVLDTYRDDNYT----PSIERRRNRGEVTI  503
            LRYS++L + GTN+ L+  +YA+ GY  + +VLD+YR++           +  +R  + +
Sbjct  437  LRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQPSSRTTLML  496

Query  504  sqslgeemgslslsYIREDYWNTSRTMESVGVGYNNSW----RGISYSMNYSYNRNTTDQ  559
            SQS G ++G+LSL   R D W   R   + + +Y  SW     G S S+N + NR T  +
Sbjct  497  SQSWGRHLGNLSLIGSRTD-W---RNRPGHDDSYGLSWGTSIGGGSLSLNWNQNR-TLWR  551

Query  560  NTGKRNDEDHLFALSISVPLGEWLPKPVYANYSLNSSKNGSTSNNLGLSGTLLERNNLSW  619
            N G R+  +++ +L +S+PL+ W  + V A+  + S+ +G+ ++++G++G  + + +L W
Sbjct  552  NGGHRK--ENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGEAFSQ-QLDW  608

Query  620  SVQEGY---TSQGRGESGSVNADWRATYAELTGGYSHDKYSHRLNYALRGGALVHENGLT  676
             V+++Y   ++ G G++++++  W ++Y+ L G+YS  +  +++   + GG ++H++G+T
Sbjct  609  EVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVT  668

Query  677  LGQPFGETVALIKAPGAAGVGVNSQTGVRTDWRGYTVVPYASPYRKNILTLDTTTMPDDV  736
            LGQP+  +VAL+ APGA+GV V +  GV+TD RG T V   S Y+ N ++LD + +PDD 
Sbjct  669  LGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLDPSQLPDDA  728

Query  737  DLELATQTVVPTRGAVVRANYATSVGNRVLMTVRQENGQPLPFGAMVSVPGAASSEQAFI  796
            ++  +   VVPT GAVV A++ T +G R LMT+++E+G ++PFGA V V G  +S +  +
Sbjct  729  EVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQDGSAD--L  786

Query  797  VGDGGQVYLTGLESNGVLNVKWGSGAQERCQIHYALPSAKELTGIIVAQAQCR  849
            V+ ++QVYLTGL  +G L VKWG+   ++C+++Y LP+ K ++G+    + CR
Sbjct  787  VDTDSQVYLTGLADKGELTVKWGA---QQCRVNYHLPAHKGIAGLYQMSGLCR  836

84) KOX_26315 in NC_016612


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  462 bits (1741),  Expect = 4e-131, Method: Compositional matrix adjust.
 Identities = 334/833 (41%), Positives = 561/833 (68%), Gaps = 37/833 (4%)

Query  33   VFNPALLEMDGPHTGVRDLSAYEQAGGQLPGTYRVDIYLNNVFMDTRDVVFQQSK-GPGI  91
             F++++L  +++  GV D+S ++Q G Q PGTYRVD+ +N   +DTRDVVF+  K G G 
Sbjct  25   TFDASML--GDAAKGV-DMSLFNQ-GVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQGT  80

Query  92   TELQPCLTVDDLAEWGVRVSQFPEL---GRRTPGCADISVIPQAKSDFRFSQQRLLLSFP  148
              L +CLTV +L+  GV+  ++P+L   ++    CAD++ IPQAK+ + +++Q+L LS+P
Sbjct  81   PFLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTAIPQAKAVLDINNQQLQLSIP  140

Query  149  QAAVASAARGWVDPKQ-WDEGVPAILLNYSFSGANNWSRQNDAPDSDNQYVNLRPGINVG  207
            Q A+ +  +G + P + WD+G+PA+L+NYS   ++   + +     ++  V+L+PGIN+G
Sbjct  141  QLALRPEFKG-IAPEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRDNSSWVQLQPGINIG  199

Query  208  PWRLRNYTTWsrsssggessnsWDTVYTYAQRNIKSIQGVMTLGDSSTDADVFEGVPFRG  267
            +WR+RN T+W RSS  +     W++ YTYA+R + S+++ +TLG+ ++++++F++VPF G
Sbjct  200  AWRVRNATSWQRSSQLSGK---WQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTG  256

Query  268  AMLASDDDMLPESLRGYAPVVRGIARTNAQVIIRQNGYEIYQTYVAPGAFEITDMYPTGG  327
             MLASDD+M+P S R +APVVRGIART+A+V ++QNGY IY+T VAPG+F + D+  T++
Sbjct  257  VMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDS  316

Query  328  SGDLAVTIKEADGSEQNLIVPYASLPVLQREGRLKYSVTSGVYRAYDNSIDETPLTQATA  387
            SGDL VT+ EADGS Q ++VPY + ++  ++G LKYS+ +G YR+ D++ D + ++QAT 
Sbjct  317  SGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATL  376

Query  388  IYGLPWGLTLYGGGQFSSKYQSVALGMGKNLGELGAVSTDIIQAWSTRQDKDKESGQSVR  447
            +YGLPW LT YGG Q ++ YQ+ +LG+G +LG  G++S D  ++ S RQ+   + G S R
Sbjct  377  MYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWR  436

Query  448  LRYSKDLPGLGTNVSLAGYRYATSGYWDMQEVLDTYRDDNYT----PSIERRRNRGEVTI  503
            LRYS++L + GTN+ L+  +YA+ GY  + +VLD+YR++           +  +R  + +
Sbjct  437  LRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQPSSRTTLML  496

Query  504  sqslgeemgslslsYIREDYWNTSRTMESVGVGYNNSW----RGISYSMNYSYNRNTTDQ  559
            SQS G ++G+LSL   R D W   R   + + +Y  SW     G S S+N + NR T  +
Sbjct  497  SQSWGRHLGNLSLIGSRTD-W---RNRPGHDDSYGLSWGTSIGGGSLSLNWNQNR-TLWR  551

Query  560  NTGKRNDEDHLFALSISVPLGEWLPKPVYANYSLNSSKNGSTSNNLGLSGTLLERNNLSW  619
            N G R+  +++ +L +S+PL+ W  + V A+  + S+ +G+ ++++G++G  + + +L W
Sbjct  552  NGGHRK--ENITSLWFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGEAFSQ-QLDW  608

Query  620  SVQEGY---TSQGRGESGSVNADWRATYAELTGGYSHDKYSHRLNYALRGGALVHENGLT  676
             V+++Y   ++ G G++++++  W ++Y+ L G+YS  +  +++   + GG ++H++G+T
Sbjct  609  EVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVT  668

Query  677  LGQPFGETVALIKAPGAAGVGVNSQTGVRTDWRGYTVVPYASPYRKNILTLDTTTMPDDV  736
            LGQP+  +VAL+ APGA+GV V +  GV+TD RG T V   S Y+ N ++LD + +PDD 
Sbjct  669  LGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLDPSQLPDDA  728

Query  737  DLELATQTVVPTRGAVVRANYATSVGNRVLMTVRQENGQPLPFGAMVSVPGAASSEQAFI  796
            ++  +   VVPT GAVV A++ T +G R LMT+++E+G ++PFGA V V G  +S +  +
Sbjct  729  EVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQDGSAD--L  786

Query  797  VGDGGQVYLTGLESNGVLNVKWGSGAQERCQIHYALPSAKELTGIIVAQAQCR  849
            V+ ++QVYLTGL  +G L VKWG+   ++C+++Y LP+ K ++G+    + CR
Sbjct  787  VDTDSQVYLTGLADKGELTVKWGA---QQCRVNYHLPAHKGIAGLYQMSGLCR  836

85) KOX_22315 in NC_016612


> NC_003198_P1|45|G40|16759290|NP_454907.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|+|41542..44052|safC|-|outer-membrane 
fimbrial usher protein
Length=836

 Score =  419 bits (1579),  Expect = 3e-118, Method: Compositional matrix adjust.
 Identities = 337/838 (41%), Positives = 548/838 (66%), Gaps = 47/838 (5%)

Query  37   FNPAHLEAGAGGLATTDLSAFEVRGGQQPGRYRVDIYVNDSKVDTRDVEFRMQQNAQGQS  96
            F+++ L  +A G+   D+S F+ +G QQPG YRVD+ VN+ +VDTRDV F++++++QG +
Sbjct  26   FDASMLGDAAKGV---DMSLFN-QGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQGTP  81

Query  97   ALQPCLSLNDLASWGVMIQRYPTL---GQPDASCARLSAIPQASADFRFshqqlllsfpq  153
             L +CL++++L+  GV  + YP L   ++    CA L+AIPQA A + +++QQL LS+PQ
Sbjct  82   FLASCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTAIPQAKAVLDINNQQLQLSIPQ  141

Query  154  sslTNAARGWVDPAR-WDDGIPAALVNYSVSgannrdkkgddgdgnaQYINLRPGLNIGP  212
             +L    +G + P   WDDGIPA L+NYS   ++   K +  G +N+  ++L+PG+NIG+
Sbjct  142  LALRPEFKG-IAPEDLWDDGIPAFLMNYSARTTQTDYKMDMVGRDNSSWVQLQPGINIGA  200

Query  213  WRLRNYTTWNRSHQGGENGTSTKWDTVYTYAQRDIRTLKSRLTLGDSTTPSDIFDSIPFR  272
            WR+RN T+W+RS Q      S KW++ YTYA+R++ +LKSRLTLG+ T+ ++IFDS+PF 
Sbjct  201  WRVRNATSWQRSSQ-----LSGKWQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFT  255

Query  273  GGQLASDDDMLPESLRGYAPVVRGIARTHAQVTIRQNEYIIYQTYVSPGSFEITDMYPTG  332
            G  LASDD+M+P S R +APVVRGIART+A+V ++QN Y IY+T V+PG+F + D+  T+
Sbjct  256  GVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTD  315

Query  333  GSGDLYVTIKESDGSEQFLVVPYASVPVLQREGRLKYAMTAGVYRAYDNGIDKAPLAAGT  392
            +SGDL VT+ E+DGS Q +VVPY + ++  ++G LKY++ AG YR+ D++ DKA +A +T
Sbjct  316  SSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQAT  375

Query  393  AIYGLPAGYTVYGGGQFSKRYQALALGIGKNLGPIGALSTDITQAWSQQKNRPREEGQSW  452
             +YGLP   T YGG Q + +YQA +LG+G +LG  G+LS D +++ SQ++  + ++G SW
Sbjct  376  LMYGLPWNLTAYGGIQSATHYQAASLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASW  435

Query  453  RIRYSKNLVQTGTNFTFAGYRYATSGYWDMQDVLN----------TWRDGRRYVMPERRR  502
            R+RYS++L  TGTN+ ++  +YA+ GY  + DVL+          +WR+    + P    
Sbjct  436  RLRYSNQLTATGTNLFLTRWQYASQGYNTLSDVLDSYRHNGNRLWSWREN---LQPS---  489

Query  503  NRAELTVSQNLFQIPGNLALSAIVEDYWGTHKRMESYSASYNGSYKGISFGLSYSYNIHS  562
            +R+ L +SQ+  +  GNL+L +   D +    + +SY+ S   S  G S++L+      +
Sbjct  490  SRTTLMLSQSWGRHLGNLSLIGSRTDWRNRPGHDDSYGLSWGTSIGGGSLSLNW-----N  544

Query  563  TERYGQRSGRTYDRDGLFALTMSIPLDKLFDGHPTYASYMMNTSKQGNTTNNVSLGGTLL  622
             +R   R+G    ++ + +L  S+PL +   G+   AS  M ++ +G  T++V++ G  +
Sbjct  545  QNRTLWRNG-GHRKENITSLWFSMPLSR-WTGNNVSASWQMTSPSHGGQTQQVGVNGEAF  602

Query  623  ADNNLSWSVMqg---ygsqgqgsnsgINADWRASYAETLVGYARDRYSERVNYGLQGGIV  679
            ++ +L W V Q+    ++ G G+NS+++  W ++Y+    +Y+  R   ++   + GGIV
Sbjct  603  SQ-QLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMRQMGVNIAGGIV  661

Query  680  AHRNGLTFSQPLGETMALIAAPGAQNVAVLGQIGVKTDRFGYTVVPYLSPYRKNDLTLNt  739
             H++G+T++QPL  ++AL+ APGA  V+V    GVKTD  G T V  LS Y+ N ++L+ 
Sbjct  662  IHHHGVTLGQPLQGSVALVEAPGASGVPVGPWPGVKTDFRGDTTVGNLSVYQENTVSLDP  721

Query  740  etladdaelalatQTVIPTRGALVKASYETSLGKRVLMTLRKRNGASVPFGATVIDPAST  799
              L+DDAE++ +   V+PT GA+V A ++T +G R LMTL++ +G+++PFGA VI  +  
Sbjct  722  SQLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVIVNGQD  781

Query  800  TPKSFIVGDGGQVYLTGLKDAGQLEVSWSHDPDGRCRVNYSLTQNAG--GIINLNAQC  855
             +  ++  D +QVYLTGL D G+L V W+ +   +CRVNY L  + G  G+ ++++ C
Sbjct  782  GSADLVDTD-SQVYLTGLADKGELTVKWGAQ---QCRVNYHLPAHKGIAGLYQMSGLC  835