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Homologs of api42 gene of AJ627388

161

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) STM14_5565
( YP_005235571.1 )

putative integrase protein

NC_016855
(Salmonella enterica 14028S)

3e-106

2) UMN798_p0050
( YP_005412537.1 )

integrase protein

NC_017054
(Salmonella enterica 798)

3e-106

3) PSLT042
( NP_490532.1 )

putative integrase protein

NC_003277
(Salmonella enterica LT2)

3e-106

4) SPC_p065
( YP_002635637.1 )

transposase of IS630

NC_012124
(Salmonella enterica RKS4594)

3e-106

5) join
( YP_209255.1 )

transposase

NC_006855
(Salmonella enterica SC-B67)

3e-106

6) STM474_p1070
( YP_005245640.1 )

putative integrase protein

NC_016858
(Salmonella enterica ST4/74)

3e-106

7) STMDT12_L00470
( YP_005250466.1 )

putative integrase

NC_016861
(Salmonella enterica T000240)

3e-106

8) STMUK_p017
( YP_005255041.1 )

putative integrase protein

NC_016864
(Salmonella enterica UK-1)

3e-106

9) SL1344_P1_0065
( YP_006203697.1 )

putative integrase protein

NC_017720
(Salmonella enterica SL1344)

6e-106

10) SeD_B0015
( YP_002213862.1 )

ransposase of

NC_011204
(Salmonella enterica CT_02021853)

2e-105

11) SBOV48691
( YP_008519239.1 )

hypothetical protein

NC_022248
(Salmonella enterica 3114)

4e-105

12) W5S_0384
( YP_006281383.1 )

IS630 transposase

NC_017845
(Pectobacterium sp. SCC3193)

4e-105

13) W5S_4080
( YP_006285015.1 )

IS630 transposase

NC_017845
(Pectobacterium sp. SCC3193)

4e-105

14) Dd703_3545
( YP_002989125.1 )

integrase protein

NC_012880
(Dickeya dadantii Ech703)

1e-104

15) Dd703_3780
( YP_002989356.1 )

integrase protein

NC_012880
(Dickeya dadantii Ech703)

1e-104

16) Dd1591_0667
( YP_003003027.1 )

putative integrase protein

NC_012912
(Dickeya zeae Ech1591)

2e-104

17) SARI_03060
( YP_001572042.1 )

hypothetical protein

NC_010067
(Salmonella enterica RSK2980)

2e-94

18) SARI_03095
( YP_001572077.1 )

hypothetical protein

NC_010067
(Salmonella enterica RSK2980)

2e-94

19) SARI_03595
( YP_001572549.1 )

hypothetical protein

NC_010067
(Salmonella enterica RSK2980)

2e-94

20) EpC_12130
( YP_002648238.1 )

transposase

NC_012214
(Erwinia pyrifoliae Ep1/96)

2e-94

21) SbBS512_A0125
( YP_001883161.1 )

IS630 transposase

NC_010660
(Shigella boydii CDC 3083-94)

3e-94

22) SBO_P069
( YP_406293.1 )

IS630 orf

NC_007608
(Shigella boydii Sb227)

3e-94

23) SFxv_4912
( YP_005711961.1 )

IS630 ORF

NC_017319
(Shigella flexneri 2002017)

3e-94

24) EPYR_00071
( YP_005800822.1 )

insertion element IS630 39 kDa protein; ISO-IS200 39 kDa protein

NC_017390
(Erwinia pyrifoliae DSM 12163)

3e-94

25) EPYR_00476
( YP_005801227.1 )

insertion element IS630 39 kDa protein; ISO-IS200 39 kDa protein

NC_017390
(Erwinia pyrifoliae DSM 12163)

3e-94

26) EPYR_00680
( YP_005801431.1 )

insertion element IS630 39 kDa protein; ISO-IS200 39 kDa protein

NC_017390
(Erwinia pyrifoliae DSM 12163)

3e-94

27) EPYR_01290
( YP_005802041.1 )

insertion element IS630 39 kDa protein; ISO-IS200 39 kDa protein

NC_017390
(Erwinia pyrifoliae DSM 12163)

3e-94

28) EPYR_01777
( YP_005802528.1 )

insertion element IS630 39 kDa protein; ISO-IS200 39 kDa protein

NC_017390
(Erwinia pyrifoliae DSM 12163)

3e-94

29) EPYR_02290
( YP_005803041.1 )

insertion element IS630 39 kDa protein; ISO-IS200 39 kDa protein

NC_017390
(Erwinia pyrifoliae DSM 12163)

3e-94

30) EPYR_02532
( YP_005803283.1 )

insertion element IS630 39 kDa protein; ISO-IS200 39 kDa protein

NC_017390
(Erwinia pyrifoliae DSM 12163)

3e-94

31) EPYR_03195
( YP_005803946.1 )

insertion element IS630 39 kDa protein; ISO-IS200 39 kDa protein

NC_017390
(Erwinia pyrifoliae DSM 12163)

3e-94

32) EPYR_03444
( YP_005804195.1 )

insertion element IS630 39 kDa protein; ISO-IS200 39 kDa protein

NC_017390
(Erwinia pyrifoliae DSM 12163)

3e-94

33) EPYR_03798
( YP_005804549.1 )

insertion element IS630 39 kDa protein; ISO-IS200 39 kDa protein

NC_017390
(Erwinia pyrifoliae DSM 12163)

3e-94

34) EpC_00690
( YP_002647106.1 )

integrase

NC_012214
(Erwinia pyrifoliae Ep1/96)

3e-94

35) EpC_04540
( YP_002647491.1 )

transposase

NC_012214
(Erwinia pyrifoliae Ep1/96)

3e-94

36) EpC_06500
( YP_002647682.1 )

transposase

NC_012214
(Erwinia pyrifoliae Ep1/96)

3e-94

37) EpC_16520
( YP_002648661.1 )

transposase

NC_012214
(Erwinia pyrifoliae Ep1/96)

3e-94

38) EpC_21300
( YP_002649134.1 )

transposase

NC_012214
(Erwinia pyrifoliae Ep1/96)

3e-94

39) EpC_23420
( YP_002649342.1 )

transposase

NC_012214
(Erwinia pyrifoliae Ep1/96)

3e-94

40) EpC_29550
( YP_002649936.1 )

IS630 transposase

NC_012214
(Erwinia pyrifoliae Ep1/96)

3e-94

41) EpC_31900
( YP_002650171.1 )

IS630 transposase

NC_012214
(Erwinia pyrifoliae Ep1/96)

3e-94

42) EpC_35310
( YP_002650512.1 )

IS630 transposase

NC_012214
(Erwinia pyrifoliae Ep1/96)

3e-94

43) CP0075
( NP_858208.1 )

IS630 orf

NC_004851
(Shigella flexneri 301)

5e-94

44) SSON_3040
( YP_311865.1 )

IS630 orf

NC_007384
(Shigella sonnei Ss046)

7e-94

45) SSON_P012
( YP_313267.1 )

IS630 orf

NC_007385
(Shigella sonnei Ss046)

1e-93

46) SSON_P006
( YP_313262.1 )

IS630 orf

NC_007385
(Shigella sonnei Ss046)

1e-93

47) SSON_P228
( YP_313481.1 )

IS630 orf

NC_007385
(Shigella sonnei Ss046)

1e-93

48) A225_R1p0105
( YP_006501552.1 )

transposase

NC_018107
(Klebsiella oxytoca E718)

1e-93

49) A225_R1p0870
( YP_006501654.1 )

transposase

NC_018107
(Klebsiella oxytoca E718)

1e-93

50) A225_NDM1p0425
( YP_008110691.1 )

Transposase

NC_021501
(Klebsiella oxytoca E718)

1e-93

51) SSON53_01530
( YP_005454887.1 )

IS630 orf

NC_016822
(Shigella sonnei 53G)

2e-93

52) SSON53_06420
( YP_005455840.1 )

IS630 orf

NC_016822
(Shigella sonnei 53G)

2e-93

53) SSON53_08405
( YP_005456231.1 )

IS630 orf

NC_016822
(Shigella sonnei 53G)

2e-93

54) SSON53_09080
( YP_005456362.1 )

IS630 orf

NC_016822
(Shigella sonnei 53G)

2e-93

55) SSON53_09675
( YP_005456481.1 )

IS630 orf

NC_016822
(Shigella sonnei 53G)

2e-93

56) SSON53_10450
( YP_005456630.1 )

IS630 orf

NC_016822
(Shigella sonnei 53G)

2e-93

57) SSON53_16540
( YP_005457816.1 )

IS630 orf

NC_016822
(Shigella sonnei 53G)

2e-93

58) SSON53_16930
( YP_005457892.1 )

IS630 orf

NC_016822
(Shigella sonnei 53G)

2e-93

59) SSON53_17605
( YP_005458025.1 )

IS630 orf

NC_016822
(Shigella sonnei 53G)

2e-93

60) SSON53_18120
( YP_005458128.1 )

IS630 orf

NC_016822
(Shigella sonnei 53G)

2e-93

61) SSON53_18795
( YP_005458263.1 )

IS630 orf

NC_016822
(Shigella sonnei 53G)

2e-93

62) SSON_0289
( YP_309306.1 )

IS630 orf

NC_007384
(Shigella sonnei Ss046)

2e-93

63) SSON_1009
( YP_309975.1 )

IS630 orf

NC_007384
(Shigella sonnei Ss046)

2e-93

64) SSON_1198
( YP_310153.1 )

IS630 orf

NC_007384
(Shigella sonnei Ss046)

2e-93

65) SSON_1451
( YP_310392.1 )

IS630 orf

NC_007384
(Shigella sonnei Ss046)

2e-93

66) SSON_1612
( YP_310543.1 )

IS630 orf

NC_007384
(Shigella sonnei Ss046)

2e-93

67) SSON_1654
( YP_310583.1 )

IS630 orf

NC_007384
(Shigella sonnei Ss046)

2e-93

68) SSON_1920
( YP_310823.1 )

IS630 orf

NC_007384
(Shigella sonnei Ss046)

2e-93

69) SSON_2039
( YP_310934.1 )

IS630 orf

NC_007384
(Shigella sonnei Ss046)

2e-93

70) SSON_3114
( YP_311935.1 )

IS630 orf

NC_007384
(Shigella sonnei Ss046)

2e-93

71) SSON_3131
( YP_311949.1 )

IS630 orf

NC_007384
(Shigella sonnei Ss046)

2e-93

72) SSON_3218
( YP_312034.1 )

IS630 orf

NC_007384
(Shigella sonnei Ss046)

2e-93

73) SSON_3249
( YP_312061.1 )

IS630 orf

NC_007384
(Shigella sonnei Ss046)

2e-93

74) SSON_4474
( YP_313186.1 )

IS630 orf

NC_007384
(Shigella sonnei Ss046)

2e-93

75) SSON_P056
( YP_313311.1 )

IS630 orf

NC_007385
(Shigella sonnei Ss046)

2e-93

76) SSON_0149
( YP_309178.1 )

IS630 orf

NC_007384
(Shigella sonnei Ss046)

4e-93

77) SSON_P183
( YP_313438.1 )

IS630 orf

NC_007385
(Shigella sonnei Ss046)

5e-93

78) SSON53_18625
( YP_005458229.1 )

IS630 orf

NC_016822
(Shigella sonnei 53G)

2e-92

79) SSON_3185
( YP_312003.1 )

IS630 orf

NC_007384
(Shigella sonnei Ss046)

2e-92

80) SFxv_5093
( YP_005712142.1 )

IS630 ORF

NC_017319
(Shigella flexneri 2002017)

3e-92

81) CP0239
( NP_858372.1 )

IS630 orf

NC_004851
(Shigella flexneri 301)

3e-92

82) Sputcn32_0218
( YP_001181753.1 )

IS630 orf

NC_009438
(Shewanella putrefaciens CN-32)

5e-92

83) Sputw3181_0436
( YP_961841.1 )

IS630 orf

NC_008750
(Shewanella sp. W3-18-1)

5e-92

84) XNC1_4405
( YP_003714491.1 )

transposase (TnpA-like protein)

NC_014228
(Xenorhabdus nematophila ATCC 19061)

9e-92

85) EcSMS35_3131
( YP_001745145.1 )

IS630 transposase

NC_010498
(Escherichia coli SMS-3-5)

4e-89

86) XBJ1_1116
( YP_003467044.1 )

transposase

NC_013892
(Xenorhabdus bovienii SS-2004)

1e-88

87) XNC1_0600
( YP_003710906.1 )

transposase

NC_014228
(Xenorhabdus nematophila ATCC 19061)

1e-88

88) XNC1_3007
( YP_003713184.1 )

transposase TnpA-like protein

NC_014228
(Xenorhabdus nematophila ATCC 19061)

2e-88

89) XNC1_4234
( YP_003714333.1 )

transposase

NC_014228
(Xenorhabdus nematophila ATCC 19061)

6e-88

90) Ser39006_1451
( YP_008521833.1 )

hypothetical protein

NC_022268
(Serratia sp. ATCC 39006)

2e-87

91) XNC1_2002
( YP_003712244.1 )

TnpA-like protein

NC_014228
(Xenorhabdus nematophila ATCC 19061)

3e-87

92) NT01EI_2537
( YP_002933941.2 )

hypothetical protein

NC_012779
(Edwardsiella ictaluri 93-146)

4e-87

93) NT01EI_2975
( YP_002934364.2 )

hypothetical protein

NC_012779
(Edwardsiella ictaluri 93-146)

4e-86

94) ASA_1023
( YP_001140898.1 )

IS630 family transposase

NC_009348
(Aeromonas salmonicida A449)

1e-84

95) ASA_1182
( YP_001141040.1 )

IS630 family transposase

NC_009348
(Aeromonas salmonicida A449)

1e-84

96) ASA_1304
( YP_001141157.1 )

IS630 family transposase

NC_009348
(Aeromonas salmonicida A449)

1e-84

97) ASA_1386
( YP_001141235.1 )

IS630 family transposase

NC_009348
(Aeromonas salmonicida A449)

1e-84

98) ASA_1400
( YP_001141249.1 )

IS630 family transposase

NC_009348
(Aeromonas salmonicida A449)

1e-84

99) ASA_1616
( YP_001141448.1 )

IS630 family transposase

NC_009348
(Aeromonas salmonicida A449)

1e-84

100) ASA_1758
( YP_001141585.1 )

IS630 family transposase

NC_009348
(Aeromonas salmonicida A449)

1e-84

101) ASA_2141
( YP_001141954.1 )

IS630 family transposase

NC_009348
(Aeromonas salmonicida A449)

1e-84

102) ASA_2512
( YP_001142291.1 )

IS630 family transposase

NC_009348
(Aeromonas salmonicida A449)

1e-84

103) ASA_2852
( YP_001142613.1 )

IS630 family transposase

NC_009348
(Aeromonas salmonicida A449)

1e-84

104) ASA_3458
( YP_001143175.1 )

IS630 family transposase

NC_009348
(Aeromonas salmonicida A449)

1e-84

105) ASA_3518
( YP_001143234.1 )

IS630 family transposase

NC_009348
(Aeromonas salmonicida A449)

1e-84

106) ASA_0160
( YP_001140105.1 )

IS630 family transposase

NC_009348
(Aeromonas salmonicida A449)

2e-84

107) ASA_0524
( YP_001140438.1 )

IS630 family transposase

NC_009348
(Aeromonas salmonicida A449)

2e-84

108) ASA_1109
( YP_001140979.1 )

IS630 family transposase

NC_009348
(Aeromonas salmonicida A449)

2e-84

109) ASA_1421
( YP_001141268.1 )

IS630 family transposase

NC_009348
(Aeromonas salmonicida A449)

2e-84

110) ASA_1470
( YP_001141312.1 )

IS630 family transposase

NC_009348
(Aeromonas salmonicida A449)

2e-84

111) ASA_1653
( YP_001141483.1 )

IS630 family transposase

NC_009348
(Aeromonas salmonicida A449)

2e-84

112) ASA_1925
( YP_001141746.1 )

IS630 family transposase

NC_009348
(Aeromonas salmonicida A449)

2e-84

113) ASA_2252
( YP_001142051.1 )

IS630 family transposase

NC_009348
(Aeromonas salmonicida A449)

2e-84

114) ASA_2478
( YP_001142259.1 )

IS630 family transposase

NC_009348
(Aeromonas salmonicida A449)

2e-84

115) ASA_3034
( YP_001142783.1 )

IS630 family transposase

NC_009348
(Aeromonas salmonicida A449)

2e-84

116) ASA_3037
( YP_001142786.1 )

IS630 family transposase

NC_009348
(Aeromonas salmonicida A449)

2e-84

117) ASA_3543
( YP_001143259.1 )

IS630 family transposase

NC_009348
(Aeromonas salmonicida A449)

2e-84

118) ASA_3677
( YP_001143386.1 )

IS630 family transposase

NC_009348
(Aeromonas salmonicida A449)

2e-84

119) ASA_3873
( YP_001143575.1 )

IS630 family transposase

NC_009348
(Aeromonas salmonicida A449)

2e-84

120) ASA_4327
( YP_001143992.1 )

IS630 family transposase

NC_009348
(Aeromonas salmonicida A449)

2e-84

121) ASA_P5G093
( YP_001144313.1 )

IS630 family transposase

NC_009350
(Aeromonas salmonicida A449)

2e-84

122) ASA_P5G010
( YP_001144234.1 )

IS630 family transposase

NC_009350
(Aeromonas salmonicida A449)

3e-84

123) ASA_1780
( YP_001141607.1 )

IS630 family transposase

NC_009348
(Aeromonas salmonicida A449)

1e-83

124) ASA_1872
( YP_001141695.1 )

IS630 family transposase

NC_009348
(Aeromonas salmonicida A449)

1e-83

125) ASA_3080
( YP_001142825.1 )

IS630 family transposase

NC_009348
(Aeromonas salmonicida A449)

5e-84

126) ASA_2237
( YP_001142044.1 )

IS630 family transposase

NC_009348
(Aeromonas salmonicida A449)

2e-83

127) tnpA
( NP_717743.1 )

ISSod16 transposase TnpA_ISSod16

NC_004347
(Shewanella oneidensis MR-1)

6e-82

128) tnpA
( NP_718606.1 )

ISSod16 transposase TnpA_ISSod16

NC_004347
(Shewanella oneidensis MR-1)

2e-81

129) tnpA
( NP_720094.1 )

ISSod16 transposase TnpA_ISSod16

NC_004347
(Shewanella oneidensis MR-1)

2e-81

130) XNC1_0599
( YP_003710905.1 )

transposase

NC_014228
(Xenorhabdus nematophila ATCC 19061)

2e-80

131) ISPlu16B
( NP_929710.1 )

IS630 family transposase

NC_005126
(Photorhabdus luminescens TTO1)

7e-80

132) ISPlu16A
( NP_930390.1 )

IS630 family transposase

NC_005126
(Photorhabdus luminescens TTO1)

7e-80

133) XNC1_1739
( YP_003711985.1 )

transposase

NC_014228
(Xenorhabdus nematophila ATCC 19061)

6e-79

134) ISPlu10K
( NP_927740.1 )

IS630 family transposase

NC_005126
(Photorhabdus luminescens TTO1)

2e-78

135) ISPlu10J
( NP_927821.1 )

IS630 family transposase

NC_005126
(Photorhabdus luminescens TTO1)

2e-78

136) ISPlu10I
( NP_928083.1 )

IS630 family transposase

NC_005126
(Photorhabdus luminescens TTO1)

2e-78

137) ISPlu10H
( NP_928792.1 )

IS630 family transposase

NC_005126
(Photorhabdus luminescens TTO1)

2e-78

138) ISPlu10G
( NP_929165.1 )

IS630 family transposase

NC_005126
(Photorhabdus luminescens TTO1)

2e-78

139) ISPlu10F
( NP_929657.1 )

IS630 family transposase

NC_005126
(Photorhabdus luminescens TTO1)

2e-78

140) ISPlu10E
( NP_930331.1 )

IS630 family transposase

NC_005126
(Photorhabdus luminescens TTO1)

2e-78

141) ISPlu10D
( NP_930493.1 )

IS630 family transposase

NC_005126
(Photorhabdus luminescens TTO1)

2e-78

142) ISPlu10C
( NP_930575.1 )

IS630 family transposase

NC_005126
(Photorhabdus luminescens TTO1)

2e-78

143) ISPlu10A
( NP_931611.1 )

IS630 family transposase

NC_005126
(Photorhabdus luminescens TTO1)

2e-78

144) ISPlu10B
( NP_931529.1 )

IS630 family transposase

NC_005126
(Photorhabdus luminescens TTO1)

1e-77

145) XNC1_0841
( YP_003711132.1 )

transposase

NC_014228
(Xenorhabdus nematophila ATCC 19061)

1e-75

146) XNC1_1608
( YP_003711869.1 )

transposase

NC_014228
(Xenorhabdus nematophila ATCC 19061)

7e-75

147) GU3_07955
( YP_005092097.1 )

IS630 family transposase

NC_016745
(Oceanimonas sp. GK1)

2e-74

148) GU3_10535
( YP_005092613.1 )

IS630 family transposase

NC_016745
(Oceanimonas sp. GK1)

2e-74

149) GU3_07330
( YP_005091972.1 )

IS630 family transposase

NC_016745
(Oceanimonas sp. GK1)

4e-74

150) XNC1_0714
( YP_003711013.1 )

transposase

NC_014228
(Xenorhabdus nematophila ATCC 19061)

1e-73

151) P12B_c1376
( YP_006168411.1 )

hypothetical protein

NC_017663
(Escherichia coli P12b)

9e-73

152) Tola_3072
( YP_002894247.1 )

transposase

NC_012691
(Tolumonas auensis DSM 9187)

1e-71

153) Tola_1058
( YP_002892271.1 )

transposase

NC_012691
(Tolumonas auensis DSM 9187)

2e-71

154) Tola_1550
( YP_002892747.1 )

transposase

NC_012691
(Tolumonas auensis DSM 9187)

2e-71

155) Tola_1884
( YP_002893073.1 )

transposase

NC_012691
(Tolumonas auensis DSM 9187)

2e-71

156) Z4330
( NP_289555.1 )

transposase

NC_002655
(Escherichia coli EDL933)

2e-68

157) ECO55CA74_17360
( YP_006160590.1 )

transposase

NC_017656
(Escherichia coli RM12579)

2e-68

158) ECSP_3955
( YP_003079772.1 )

transposase

NC_013008
(Escherichia coli TW14359)

2e-68

159) ECs3859
( NP_311886.1 )

hypothetical protein

NC_002695
(Escherichia coli Sakai)

3e-68

160) CDCO157_3606
( YP_006314472.1 )

hypothetical protein

NC_017906
(Escherichia coli Xuzhou21)

3e-68

161) XNC1_4407
( YP_003714493.1 )

transposase

NC_014228
(Xenorhabdus nematophila ATCC 19061)

7e-60

• Sequence Alignments

1) join in NC_006855


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  377 bits (1419),  Expect = 3e-106, Method: Compositional matrix adjust.
 Identities = 213/304 (71%), Positives = 260/304 (86%), Gaps = 0/304 (0%)

Query  34   MLMLHQGMTVTDVARLLCAARSSVGRWINWFTLHGVEGLKSLRPGRAPRWPVADILQLLP  93
            MLMLH+G TV++ AR LCAARSSVGRWINWFTL G EGL+SL P R+ +WPV +I+  L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLVQRSPKDFGWLRSRWSTELLALVINRLFDVTLHRSTLHRYLRQADMVWRRAAPTLKIK  153
            LL+Q++P++FGWLRSRWST LL++ I+ LF +++  ST+ R L QA++VWRRAAPTLK+K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHYEEKRLVIDQALAQEQTAHPVFYQDEVDIDLNPKIGADWMPKGQQKRIATPGQNQKH  213
            DPHY EK   I+ AL +++ A+PVFY+DEVDIDLNPKIGADW  KGQQKRIATPGQNQKH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGRVHYVSGSSKSSDLFISLLETLRRTYRRAKTITLVADNYIIHKSRKVER  273
            YL+G++++ TGRV+YVSG+SK+S LFI++LE LR+TYRRA TITL+ DNY+IHKSRKVE 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLEENPKFRLLFLPMYSPWLNPIERLWLSLHETITRNHQCRYMWQLLKQVAQFMNAASLF  333
            WL+ENPKF+LLFLP YSPWLN IE LWLSLHET+TRNHQCRYMWQLL +V QFM  AS F
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGNQ  337
            PG+Q
Sbjct  301  PGSQ  304

2) SPC_p065 in NC_012124


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  377 bits (1419),  Expect = 3e-106, Method: Compositional matrix adjust.
 Identities = 213/304 (71%), Positives = 260/304 (86%), Gaps = 0/304 (0%)

Query  34   MLMLHQGMTVTDVARLLCAARSSVGRWINWFTLHGVEGLKSLRPGRAPRWPVADILQLLP  93
            MLMLH+G TV++ AR LCAARSSVGRWINWFTL G EGL+SL P R+ +WPV +I+  L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLVQRSPKDFGWLRSRWSTELLALVINRLFDVTLHRSTLHRYLRQADMVWRRAAPTLKIK  153
            LL+Q++P++FGWLRSRWST LL++ I+ LF +++  ST+ R L QA++VWRRAAPTLK+K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHYEEKRLVIDQALAQEQTAHPVFYQDEVDIDLNPKIGADWMPKGQQKRIATPGQNQKH  213
            DPHY EK   I+ AL +++ A+PVFY+DEVDIDLNPKIGADW  KGQQKRIATPGQNQKH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGRVHYVSGSSKSSDLFISLLETLRRTYRRAKTITLVADNYIIHKSRKVER  273
            YL+G++++ TGRV+YVSG+SK+S LFI++LE LR+TYRRA TITL+ DNY+IHKSRKVE 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLEENPKFRLLFLPMYSPWLNPIERLWLSLHETITRNHQCRYMWQLLKQVAQFMNAASLF  333
            WL+ENPKF+LLFLP YSPWLN IE LWLSLHET+TRNHQCRYMWQLL +V QFM  AS F
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGNQ  337
            PG+Q
Sbjct  301  PGSQ  304

3) STM14_5565 in NC_016855


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  377 bits (1419),  Expect = 3e-106, Method: Compositional matrix adjust.
 Identities = 213/304 (71%), Positives = 260/304 (86%), Gaps = 0/304 (0%)

Query  34   MLMLHQGMTVTDVARLLCAARSSVGRWINWFTLHGVEGLKSLRPGRAPRWPVADILQLLP  93
            MLMLH+G TV++ AR LCAARSSVGRWINWFTL G EGL+SL P R+ +WPV +I+  L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLVQRSPKDFGWLRSRWSTELLALVINRLFDVTLHRSTLHRYLRQADMVWRRAAPTLKIK  153
            LL+Q++P++FGWLRSRWST LL++ I+ LF +++  ST+ R L QA++VWRRAAPTLK+K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHYEEKRLVIDQALAQEQTAHPVFYQDEVDIDLNPKIGADWMPKGQQKRIATPGQNQKH  213
            DPHY EK   I+ AL +++ A+PVFY+DEVDIDLNPKIGADW  KGQQKRIATPGQNQKH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGRVHYVSGSSKSSDLFISLLETLRRTYRRAKTITLVADNYIIHKSRKVER  273
            YL+G++++ TGRV+YVSG+SK+S LFI++LE LR+TYRRA TITL+ DNY+IHKSRKVE 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLEENPKFRLLFLPMYSPWLNPIERLWLSLHETITRNHQCRYMWQLLKQVAQFMNAASLF  333
            WL+ENPKF+LLFLP YSPWLN IE LWLSLHET+TRNHQCRYMWQLL +V QFM  AS F
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGNQ  337
            PG+Q
Sbjct  301  PGSQ  304

4) UMN798_p0050 in NC_017054


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  377 bits (1419),  Expect = 3e-106, Method: Compositional matrix adjust.
 Identities = 213/304 (71%), Positives = 260/304 (86%), Gaps = 0/304 (0%)

Query  34   MLMLHQGMTVTDVARLLCAARSSVGRWINWFTLHGVEGLKSLRPGRAPRWPVADILQLLP  93
            MLMLH+G TV++ AR LCAARSSVGRWINWFTL G EGL+SL P R+ +WPV +I+  L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLVQRSPKDFGWLRSRWSTELLALVINRLFDVTLHRSTLHRYLRQADMVWRRAAPTLKIK  153
            LL+Q++P++FGWLRSRWST LL++ I+ LF +++  ST+ R L QA++VWRRAAPTLK+K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHYEEKRLVIDQALAQEQTAHPVFYQDEVDIDLNPKIGADWMPKGQQKRIATPGQNQKH  213
            DPHY EK   I+ AL +++ A+PVFY+DEVDIDLNPKIGADW  KGQQKRIATPGQNQKH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGRVHYVSGSSKSSDLFISLLETLRRTYRRAKTITLVADNYIIHKSRKVER  273
            YL+G++++ TGRV+YVSG+SK+S LFI++LE LR+TYRRA TITL+ DNY+IHKSRKVE 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLEENPKFRLLFLPMYSPWLNPIERLWLSLHETITRNHQCRYMWQLLKQVAQFMNAASLF  333
            WL+ENPKF+LLFLP YSPWLN IE LWLSLHET+TRNHQCRYMWQLL +V QFM  AS F
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGNQ  337
            PG+Q
Sbjct  301  PGSQ  304

5) PSLT042 in NC_003277


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  377 bits (1419),  Expect = 3e-106, Method: Compositional matrix adjust.
 Identities = 213/304 (71%), Positives = 260/304 (86%), Gaps = 0/304 (0%)

Query  34   MLMLHQGMTVTDVARLLCAARSSVGRWINWFTLHGVEGLKSLRPGRAPRWPVADILQLLP  93
            MLMLH+G TV++ AR LCAARSSVGRWINWFTL G EGL+SL P R+ +WPV +I+  L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLVQRSPKDFGWLRSRWSTELLALVINRLFDVTLHRSTLHRYLRQADMVWRRAAPTLKIK  153
            LL+Q++P++FGWLRSRWST LL++ I+ LF +++  ST+ R L QA++VWRRAAPTLK+K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHYEEKRLVIDQALAQEQTAHPVFYQDEVDIDLNPKIGADWMPKGQQKRIATPGQNQKH  213
            DPHY EK   I+ AL +++ A+PVFY+DEVDIDLNPKIGADW  KGQQKRIATPGQNQKH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGRVHYVSGSSKSSDLFISLLETLRRTYRRAKTITLVADNYIIHKSRKVER  273
            YL+G++++ TGRV+YVSG+SK+S LFI++LE LR+TYRRA TITL+ DNY+IHKSRKVE 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLEENPKFRLLFLPMYSPWLNPIERLWLSLHETITRNHQCRYMWQLLKQVAQFMNAASLF  333
            WL+ENPKF+LLFLP YSPWLN IE LWLSLHET+TRNHQCRYMWQLL +V QFM  AS F
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGNQ  337
            PG+Q
Sbjct  301  PGSQ  304

6) STM474_p1070 in NC_016858


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  377 bits (1419),  Expect = 3e-106, Method: Compositional matrix adjust.
 Identities = 213/304 (71%), Positives = 260/304 (86%), Gaps = 0/304 (0%)

Query  34   MLMLHQGMTVTDVARLLCAARSSVGRWINWFTLHGVEGLKSLRPGRAPRWPVADILQLLP  93
            MLMLH+G TV++ AR LCAARSSVGRWINWFTL G EGL+SL P R+ +WPV +I+  L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLVQRSPKDFGWLRSRWSTELLALVINRLFDVTLHRSTLHRYLRQADMVWRRAAPTLKIK  153
            LL+Q++P++FGWLRSRWST LL++ I+ LF +++  ST+ R L QA++VWRRAAPTLK+K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHYEEKRLVIDQALAQEQTAHPVFYQDEVDIDLNPKIGADWMPKGQQKRIATPGQNQKH  213
            DPHY EK   I+ AL +++ A+PVFY+DEVDIDLNPKIGADW  KGQQKRIATPGQNQKH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGRVHYVSGSSKSSDLFISLLETLRRTYRRAKTITLVADNYIIHKSRKVER  273
            YL+G++++ TGRV+YVSG+SK+S LFI++LE LR+TYRRA TITL+ DNY+IHKSRKVE 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLEENPKFRLLFLPMYSPWLNPIERLWLSLHETITRNHQCRYMWQLLKQVAQFMNAASLF  333
            WL+ENPKF+LLFLP YSPWLN IE LWLSLHET+TRNHQCRYMWQLL +V QFM  AS F
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGNQ  337
            PG+Q
Sbjct  301  PGSQ  304

7) STMDT12_L00470 in NC_016861


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  377 bits (1419),  Expect = 3e-106, Method: Compositional matrix adjust.
 Identities = 213/304 (71%), Positives = 260/304 (86%), Gaps = 0/304 (0%)

Query  34   MLMLHQGMTVTDVARLLCAARSSVGRWINWFTLHGVEGLKSLRPGRAPRWPVADILQLLP  93
            MLMLH+G TV++ AR LCAARSSVGRWINWFTL G EGL+SL P R+ +WPV +I+  L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLVQRSPKDFGWLRSRWSTELLALVINRLFDVTLHRSTLHRYLRQADMVWRRAAPTLKIK  153
            LL+Q++P++FGWLRSRWST LL++ I+ LF +++  ST+ R L QA++VWRRAAPTLK+K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHYEEKRLVIDQALAQEQTAHPVFYQDEVDIDLNPKIGADWMPKGQQKRIATPGQNQKH  213
            DPHY EK   I+ AL +++ A+PVFY+DEVDIDLNPKIGADW  KGQQKRIATPGQNQKH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGRVHYVSGSSKSSDLFISLLETLRRTYRRAKTITLVADNYIIHKSRKVER  273
            YL+G++++ TGRV+YVSG+SK+S LFI++LE LR+TYRRA TITL+ DNY+IHKSRKVE 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLEENPKFRLLFLPMYSPWLNPIERLWLSLHETITRNHQCRYMWQLLKQVAQFMNAASLF  333
            WL+ENPKF+LLFLP YSPWLN IE LWLSLHET+TRNHQCRYMWQLL +V QFM  AS F
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGNQ  337
            PG+Q
Sbjct  301  PGSQ  304

8) STMUK_p017 in NC_016864


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  377 bits (1419),  Expect = 3e-106, Method: Compositional matrix adjust.
 Identities = 213/304 (71%), Positives = 260/304 (86%), Gaps = 0/304 (0%)

Query  34   MLMLHQGMTVTDVARLLCAARSSVGRWINWFTLHGVEGLKSLRPGRAPRWPVADILQLLP  93
            MLMLH+G TV++ AR LCAARSSVGRWINWFTL G EGL+SL P R+ +WPV +I+  L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLVQRSPKDFGWLRSRWSTELLALVINRLFDVTLHRSTLHRYLRQADMVWRRAAPTLKIK  153
            LL+Q++P++FGWLRSRWST LL++ I+ LF +++  ST+ R L QA++VWRRAAPTLK+K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHYEEKRLVIDQALAQEQTAHPVFYQDEVDIDLNPKIGADWMPKGQQKRIATPGQNQKH  213
            DPHY EK   I+ AL +++ A+PVFY+DEVDIDLNPKIGADW  KGQQKRIATPGQNQKH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGRVHYVSGSSKSSDLFISLLETLRRTYRRAKTITLVADNYIIHKSRKVER  273
            YL+G++++ TGRV+YVSG+SK+S LFI++LE LR+TYRRA TITL+ DNY+IHKSRKVE 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLEENPKFRLLFLPMYSPWLNPIERLWLSLHETITRNHQCRYMWQLLKQVAQFMNAASLF  333
            WL+ENPKF+LLFLP YSPWLN IE LWLSLHET+TRNHQCRYMWQLL +V QFM  AS F
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGNQ  337
            PG+Q
Sbjct  301  PGSQ  304

9) SL1344_P1_0065 in NC_017720


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  376 bits (1415),  Expect = 6e-106, Method: Compositional matrix adjust.
 Identities = 213/304 (71%), Positives = 260/304 (86%), Gaps = 0/304 (0%)

Query  20   MLMLHQGMTVTDVARLLCAARSSVGRWINWFTLHGVEGLKSLRPGRAPRWPVADILQLLP  79
            MLMLH+G TV++ AR LCAARSSVGRWINWFTL G EGL+SL P R+ +WPV +I+  L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  80   LLVQRSPKDFGWLRSRWSTELLALVINRLFDVTLHRSTLHRYLRQADMVWRRAAPTLKIK  139
            LL+Q++P++FGWLRSRWST LL++ I+ LF +++  ST+ R L QA++VWRRAAPTLK+K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  140  DPHYEEKRLVIDQALAQEQTAHPVFYQDEVDIDLNPKIGADWMPKGQQKRIATPGQNQKH  199
            DPHY EK   I+ AL +++ A+PVFY+DEVDIDLNPKIGADW  KGQQKRIATPGQNQKH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  200  YLAGALHSGTGRVHYVSGSSKSSDLFISLLETLRRTYRRAKTITLVADNYIIHKSRKVER  259
            YL+G++++ TGRV+YVSG+SK+S LFI++LE LR+TYRRA TITL+ DNY+IHKSRKVE 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  260  WLEENPKFRLLFLPMYSPWLNPIERLWLSLHETITRNHQCRYMWQLLKQVAQFMNAASLF  319
            WL+ENPKF+LLFLP YSPWLN IE LWLSLHET+TRNHQCRYMWQLL +V QFM  AS F
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  320  PGNQ  323
            PG+Q
Sbjct  301  PGSQ  304

10) SeD_B0015 in NC_011204


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  375 bits (1408),  Expect = 2e-105, Method: Compositional matrix adjust.
 Identities = 212/304 (70%), Positives = 259/304 (86%), Gaps = 0/304 (0%)

Query  34   MLMLHQGMTVTDVARLLCAARSSVGRWINWFTLHGVEGLKSLRPGRAPRWPVADILQLLP  93
            MLMLH+G TV++ AR LCAARSSVGRWINWFTL G EGL+SL P R+ +WPV +I+  L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLVQRSPKDFGWLRSRWSTELLALVINRLFDVTLHRSTLHRYLRQADMVWRGAAPTLKIK  153
            LL+Q++P++FGWLRSRWST LL++ I+ LF +++  ST+ R L QA++VWR AAPTLK+K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHYEEKRLVIDQALAQEQTAHPVFYQDEVDIDLNPKIGADWMPKGQQKRIATPGQNQKH  213
            DPHY EK   I+ AL +++ A+PVFY+DEVDIDLNPKIGADW  KGQQKRIATPGQNQKH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGRVHYVSGSSKSSDLFISLLETLRRTYRRAKTITLVADNYIIHKSRKVER  273
            YL+G++++ TGRV+YVSG+SK+S LFI++LE LR+TYRRA TITL+ DNY+IHKSRKVE 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLEENPKFRLLFLPMYSPWLNPIERLWLSLHETITRNHQCRYMWQLLKQVAQFMNAASLF  333
            WL+ENPKF+LLFLP YSPWLN IE LWLSLHET+TRNHQCRYMWQLL +V QFM  AS F
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGNQ  337
            PG+Q
Sbjct  301  PGSQ  304

11) SBOV48691 in NC_022248


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  374 bits (1405),  Expect = 4e-105, Method: Compositional matrix adjust.
 Identities = 212/304 (70%), Positives = 258/304 (85%), Gaps = 0/304 (0%)

Query  34   MLMLHQGMTVTDVARLLCAARSSVGRWINWFTLHGVEGLKSLRPGRAPRWPVADILQLLP  93
            MLMLH+G TV++ AR LCAARSSVGRWINWFTL G EGL+SL P R+ +WPV +I+  L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLVQRSPKDFGWLRSRWSTELLVLVINRLFDVTLHRSTLHRYLRQADMVWRRAAPTLKIK  153
            LL+Q++P++FGWLRSRWST LL + I+ LF +++  ST+ R L QA++VWRRAAPTLK+K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHYEEKRLVIDQALAQEQTAHPVFYQDEVDIDLNPKIGADWMPKGQQKRIATPGQNQKH  213
            DPHY EK   I+ AL +++ A+PVFY+DEVDIDLNPKIGADW  KGQQKRIATPGQNQKH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGRVHYVSGSSKSSDLFISLLETLRRTYRRAKTITLVADNYIIHKSRKVER  273
            YL+G++++ TGRV+YVSG+SK+S LFI++LE LR+TYRRA TITL+ DNY+IHKSRKVE 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLEENPKFRLLFLPMYSPWLNPIERQWLSLHETITRNHQCRYMWQLLKQVAQFMNAASLF  333
            WL+ENPKF+LLFLP YSPWLN IE  WLSLHET+TRNHQCRYMWQLL +V QFM  AS F
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGNQ  337
            PG+Q
Sbjct  301  PGSQ  304

12) W5S_0384 in NC_017845


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  374 bits (1405),  Expect = 4e-105, Method: Compositional matrix adjust.
 Identities = 208/304 (69%), Positives = 261/304 (86%), Gaps = 0/304 (0%)

Query  34   ILMLHKGMTVTDVARLLCAARSSVGRWINWFTLQGVEGLKSLKSGRAPRWPVADILHTLP  93
            +LMLH+G TV++ AR LCAARSSVGRWINWFTL G EGL+SL + R+ +WPV +I+ TL 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLVQRSPQDFGWLRSRWSTELLALIVNRLFNAELHPATLHRYLRRAGIVWRRAAPTLKIK  153
            LL+Q++PQ+FGWLRSRWST LL++ ++ LF+  +  +T+ R L +AGIVWRRAAPTLK+K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHYEEKRLAIEQAVVRKQPAHPVFYQDEVDIDLNPKIGADWMLKGQQKRITTPGHNQKY  213
            DPHY EK  AI+ A+ +++ A+PVFY+DEVDIDLNPKIGADW +KGQQKRI+TPG+NQK 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSDTGRVHYVGDSKKCSDLFINLLETLRRTYRRAKTITLVVDNYIIHKSRKVER  273
            YL+G++++ TGRV+YV+++ K S LFIN+LE LR+TYRRA TITL++DNY+IHKSRKVE 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLEKNTKFRLLFLPTYSPWLNPIELLWLSLHETITRNHQCRYMWQLLAQVKLFMNAASPF  333
            WL+ N KF+LLFLPTYSPWLN IELLWLSLHET+TRNHQCRYMWQLL +VK FM  ASPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGNQ  337
            PG+Q
Sbjct  301  PGSQ  304

13) W5S_4080 in NC_017845


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  374 bits (1405),  Expect = 4e-105, Method: Compositional matrix adjust.
 Identities = 208/304 (69%), Positives = 261/304 (86%), Gaps = 0/304 (0%)

Query  34   ILMLHKGMTVTDVARLLCAARSSVGRWINWFTLQGVEGLKSLKSGRAPRWPVADILHTLP  93
            +LMLH+G TV++ AR LCAARSSVGRWINWFTL G EGL+SL + R+ +WPV +I+ TL 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLVQRSPQDFGWLRSRWSTELLALIVNRLFNAELHPATLHRYLRRAGIVWRRAAPTLKIK  153
            LL+Q++PQ+FGWLRSRWST LL++ ++ LF+  +  +T+ R L +AGIVWRRAAPTLK+K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHYEEKRLAIEQAVVRKQPAHPVFYQDEVDIDLNPKIGADWMLKGQQKRITTPGHNQKY  213
            DPHY EK  AI+ A+ +++ A+PVFY+DEVDIDLNPKIGADW +KGQQKRI+TPG+NQK 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSDTGRVHYVGDSKKCSDLFINLLETLRRTYRRAKTITLVVDNYIIHKSRKVER  273
            YL+G++++ TGRV+YV+++ K S LFIN+LE LR+TYRRA TITL++DNY+IHKSRKVE 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLEKNTKFRLLFLPTYSPWLNPIELLWLSLHETITRNHQCRYMWQLLAQVKLFMNAASPF  333
            WL+ N KF+LLFLPTYSPWLN IELLWLSLHET+TRNHQCRYMWQLL +VK FM  ASPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGNQ  337
            PG+Q
Sbjct  301  PGSQ  304

14) Dd703_3545 in NC_012880


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  372 bits (1399),  Expect = 1e-104, Method: Compositional matrix adjust.
 Identities = 213/305 (70%), Positives = 257/305 (85%), Gaps = 0/305 (0%)

Query  34   ILMLHRGMTVTDVARLLCAARSSVGRWINWFTLQGVEGLKSLRAGRAPCWPVADIQRVLP  93
            +LMLHRG TV++ AR LCAARSSVGRWINWFTL G EGL+SL + R+  WPV +I   L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLVQRSPKDFGWLRSRWSTELLTRIVNRLFDVTLHRSTLHRYLKQAGMVWRRAAPTLKIR  153
            LL+Q++P++FGWLRSRWST LL+  ++ LF +++  ST+ R L QAG+VWRRAAPTLK++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHYDEKRLAIEQALAQDSAAHPVFYQDEVDIDLNPKIGADWMPKGQQKRIATPGQNQKH  213
            DPHY EK  AI+ AL ++  A+PVFY+DEVDIDLNPKIGADW  KGQQKRIATPGQNQKH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGRVSYASGNSKNSDLFINLLEALRRTYRRAKTITLVVDNYIIHKSRKVER  273
            YL+G++++ TGRV Y SG SKNS LFIN+LE LR+TYRRA TITL++DNY+IHKSRKVE 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLEENRKFRLLFLPTYSPWLNPIERLWLSLHETITRNHQCRYLWQLLKQVTQFMNAASPF  333
            WL+EN KF+LLFLPTYSPWLN IE LWLSLHET+TRNHQCRY+WQLL +V QFM  ASPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGNQP  338
            PG+Q+
Sbjct  301  PGSQA  305

15) Dd703_3780 in NC_012880


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  372 bits (1399),  Expect = 1e-104, Method: Compositional matrix adjust.
 Identities = 213/305 (70%), Positives = 257/305 (85%), Gaps = 0/305 (0%)

Query  34   ILMLHRGMTVTDVARLLCAARSSVGRWINWFTLQGVEGLKSLRAGRAPCWPVADIQRVLP  93
            +LMLHRG TV++ AR LCAARSSVGRWINWFTL G EGL+SL + R+  WPV +I   L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLVQRSPKDFGWLRSRWSTELLTRIVNRLFDVTLHRSTLHRYLKQAGMVWRRAAPTLKIR  153
            LL+Q++P++FGWLRSRWST LL+  ++ LF +++  ST+ R L QAG+VWRRAAPTLK++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHYDEKRLAIEQALAQDSAAHPVFYQDEVDIDLNPKIGADWMPKGQQKRIATPGQNQKH  213
            DPHY EK  AI+ AL ++  A+PVFY+DEVDIDLNPKIGADW  KGQQKRIATPGQNQKH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGRVSYASGNSKNSDLFINLLEALRRTYRRAKTITLVVDNYIIHKSRKVER  273
            YL+G++++ TGRV Y SG SKNS LFIN+LE LR+TYRRA TITL++DNY+IHKSRKVE 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLEENRKFRLLFLPTYSPWLNPIERLWLSLHETITRNHQCRYLWQLLKQVTQFMNAASPF  333
            WL+EN KF+LLFLPTYSPWLN IE LWLSLHET+TRNHQCRY+WQLL +V QFM  ASPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGNQP  338
            PG+Q+
Sbjct  301  PGSQA  305

16) Dd1591_0667 in NC_012912


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  371 bits (1396),  Expect = 2e-104, Method: Compositional matrix adjust.
 Identities = 214/305 (71%), Positives = 256/305 (84%), Gaps = 0/305 (0%)

Query  34   MLMLHRGMTVTDVARLLCAARSSVGRWINWFTLQGVEGLKSLRPGRAPCWPVADIQRVLP  93
            MLMLHRG TV++ AR LCAARSSVGRWINWFTL G EGL+SL P R+  WPV +I   L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLVQRSPKDFGWLRSRWSTELLTRIVNRLFDVALHRSTLHRYLKQAGMVWRRAAPTLKIR  153
            LL+Q++P++FGWLRSRWST LL+  ++ LF +++  ST+ R L QAG+VWRRAAPTLK++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPYYDEKRLAIEQALTQGSAANPVFYQDEVDIDLNPKIGADWMPKGQQKRIATPGQNQKH  213
            DP Y EK  AI+ AL +   ANPVFY+DEVDIDLNPKIGADW  KGQQKRIATPGQNQKH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGRVSYVSGNSKSSDLFIKLLESLRRTYRRAKTITLVVDNYIIHKSHKVER  273
            YL+G++++ TGRV YVSG SK+S LFI++LE LR+TYRRA TITL++DNY+IHKS+KVE 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLSENSKFRLLFLPTYSPWLNPIERLWLSLHETITRNHQCRYMWQLLKQVTQFMNAASPF  333
            WL EN+KF+LLFLPTYSPWLN IE LWLSLHET+TRNHQCRYMWQLL +V QFM  ASPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGNQP  338
            PG+Q+
Sbjct  301  PGSQA  305

17) SARI_03060 in NC_010067


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  338 bits (1268),  Expect = 2e-94, Method: Compositional matrix adjust.
 Identities = 187/304 (62%), Positives = 247/304 (82%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDRVSDVARTLCCARSSVGRWINWFTLSGVAGLKSLPAGRTRRWPFEHICTLLR  93
            MLMLHRGD VS+ ARTLC ARSSVGRWINWFTL G  GL+SLP+ R R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHAPGDFGYQRSRWSTELLAIKINEITGCQLHAGTVRRWLPSAGLVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  +  +TV R L  AG+VWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+AAI+ AL+     +PVFYEDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSYVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQR  273
            YL+G++++ TG+V YV+G SK+S LFI++L +L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKENPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCRSMWQLLKKVRHFMETVSPF  333
            WL+ENPKF++++ P YSPW+N +E LW +LH+T+TRNHQCR MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

18) SARI_03095 in NC_010067


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  338 bits (1268),  Expect = 2e-94, Method: Compositional matrix adjust.
 Identities = 187/304 (62%), Positives = 247/304 (82%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDRVSDVARTLCCARSSVGRWINWFTLSGVAGLKSLPAGRTRRWPFEHICTLLR  93
            MLMLHRGD VS+ ARTLC ARSSVGRWINWFTL G  GL+SLP+ R R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHAPGDFGYQRSRWSTELLAIKINEITGCQLHAGTVRRWLPSAGLVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  +  +TV R L  AG+VWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+AAI+ AL+     +PVFYEDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSYVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQR  273
            YL+G++++ TG+V YV+G SK+S LFI++L +L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKENPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCRSMWQLLKKVRHFMETVSPF  333
            WL+ENPKF++++ P YSPW+N +E LW +LH+T+TRNHQCR MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

19) SARI_03595 in NC_010067


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  338 bits (1268),  Expect = 2e-94, Method: Compositional matrix adjust.
 Identities = 187/304 (62%), Positives = 247/304 (82%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDRVSDVARTLCCARSSVGRWINWFTLSGVAGLKSLPAGRTRRWPFEHICTLLR  93
            MLMLHRGD VS+ ARTLC ARSSVGRWINWFTL G  GL+SLP+ R R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHAPGDFGYQRSRWSTELLAIKINEITGCQLHAGTVRRWLPSAGLVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  +  +TV R L  AG+VWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+AAI+ AL+     +PVFYEDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSYVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQR  273
            YL+G++++ TG+V YV+G SK+S LFI++L +L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKENPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCRSMWQLLKKVRHFMETVSPF  333
            WL+ENPKF++++ P YSPW+N +E LW +LH+T+TRNHQCR MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

20) EpC_12130 in NC_012214


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  338 bits (1269),  Expect = 2e-94, Method: Compositional matrix adjust.
 Identities = 185/304 (61%), Positives = 248/304 (82%), Gaps = 0/304 (0%)

Query  34   ILMLHRGNRVSHVARTLCCARSSVGRWINWFTLSGVEGLKSLPAGRSRRWPFEHICTLLR  93
            +LMLHRG+ VSH ARTLC ARSSVGRWINWFTL G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELIKHSPGDFGYQRSRWSTELLAIKIKDITGCRLHAGTVRRWLPAAGLVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKIK++ +  +  +TV R L  AG+VWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAVIRQALDKCSAEHPVFYEDEVDIHLNPKIGADWQLRGQQRRVVTPGQNEKY  213
            DPH  EK+A I+ AL+K    +PVFYEDEVDI+LNPKIGADW ++GQQ+R+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSYVGGNSKSSVLFISLLKHLKASYRRAKTITLIVDNYIIHKSRETLS  273
            YL+G++++ TG+V YV+G SK+S+LFI++L  L+ +YRRA TITLI+DNY+IHKSR    
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKQNPKFRMIYQPVYSPWVNHVERLWQALHDTITRNHQCRSMWQLLKKVRHFMKTVSPF  333
            WL++NPKF++++ P YSPW+N +E LW +LH+T+TRNHQCR MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

21) SbBS512_A0125 in NC_010660


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  338 bits (1268),  Expect = 3e-94, Method: Compositional matrix adjust.
 Identities = 187/304 (62%), Positives = 248/304 (82%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDRVSDVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLR  93
            MLMLHRGD VS+ ARTLC ARSSVGRWINWFT  G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHSPGDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  ++ +TV R L  AGIVWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLHPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+AAI+ AL+     +PVFYEDEVDI+L+PKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSYVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQS  273
            YL+G++++ TG+V YV+G SK+S LFI++L +L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKENPKFRGIYQPVYSPWVNHVERLWQALHDTITRNHQCRSMWQLLKKVRHFMETVSPF  333
            WL+ENPKF+ ++ P YSPW+N +E LW +LH+T+TRNHQCR MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

22) SBO_P069 in NC_007608


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  338 bits (1268),  Expect = 3e-94, Method: Compositional matrix adjust.
 Identities = 187/304 (62%), Positives = 248/304 (82%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDRVSDVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLR  93
            MLMLHRGD VS+ ARTLC ARSSVGRWINWFT  G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHSPGDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  ++ +TV R L  AGIVWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLHPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+AAI+ AL+     +PVFYEDEVDI+L+PKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSYVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQS  273
            YL+G++++ TG+V YV+G SK+S LFI++L +L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKENPKFRGIYQPVYSPWVNHVERLWQALHDTITRNHQCRSMWQLLKKVRHFMETVSPF  333
            WL+ENPKF+ ++ P YSPW+N +E LW +LH+T+TRNHQCR MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

23) SFxv_4912 in NC_017319


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  338 bits (1268),  Expect = 3e-94, Method: Compositional matrix adjust.
 Identities = 187/304 (62%), Positives = 248/304 (82%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDRVSDVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLR  93
            MLMLHRGD VS+ ARTLC ARSSVGRWINWFT  G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHSPGDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  ++ +TV R L  AGIVWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLHPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+AAI+ AL+     +PVFYEDEVDI+L+PKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSYVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQS  273
            YL+G++++ TG+V YV+G SK+S LFI++L +L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKENPKFRGIYQPVYSPWVNHVERLWQALHDTITRNHQCRSMWQLLKKVRHFMETVSPF  333
            WL+ENPKF+ ++ P YSPW+N +E LW +LH+T+TRNHQCR MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

24) EPYR_00071 in NC_017390


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  338 bits (1267),  Expect = 3e-94, Method: Compositional matrix adjust.
 Identities = 185/304 (61%), Positives = 248/304 (82%), Gaps = 0/304 (0%)

Query  34   ILMLHRGNRVSHVARTLCCARSSVGRWINWFTLSGVEGLKSLPAGRSRRWPFEHICTLLR  93
            +LMLHRG+ VSH ARTLC ARSSVGRWINWFTL G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELIKHSPGDFGYQRSRWSTELLAIKIKDITGCRLHAGTVRRWLPAAGLVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKIK++ +  +  +TV R L  AG+VWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAVIRQALDKCSAEHPVFYEDEVDIHLNPKIGADWQLRGQQRRVVTPGQNEKY  213
            DPH  EK+A I+ AL+K    +PVFYEDEVDI+LNPKIGADW ++GQQ+R+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSYVGGNSKSSVLFISLLKHLKASYRRAKTITLIVDNYIIHKSRETLS  273
            YL+G++++ TG+V YV+G SK+S+LFI++L  L+ +YRRA TITLI+DNY+IHKSR    
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKQNPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCRSMWQLLKKVRHFMKTVSPF  333
            WL++NPKF++++ P YSPW+N +E LW +LH+T+TRNHQCR MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

25) EPYR_00476 in NC_017390


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  338 bits (1267),  Expect = 3e-94, Method: Compositional matrix adjust.
 Identities = 185/304 (61%), Positives = 248/304 (82%), Gaps = 0/304 (0%)

Query  34   ILMLHRGNRVSHVARTLCCARSSVGRWINWFTLSGVEGLKSLPAGRSRRWPFEHICTLLR  93
            +LMLHRG+ VSH ARTLC ARSSVGRWINWFTL G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELIKHSPGDFGYQRSRWSTELLAIKIKDITGCRLHAGTVRRWLPAAGLVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKIK++ +  +  +TV R L  AG+VWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAVIRQALDKCSAEHPVFYEDEVDIHLNPKIGADWQLRGQQRRVVTPGQNEKY  213
            DPH  EK+A I+ AL+K    +PVFYEDEVDI+LNPKIGADW ++GQQ+R+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSYVGGNSKSSVLFISLLKHLKASYRRAKTITLIVDNYIIHKSRETLS  273
            YL+G++++ TG+V YV+G SK+S+LFI++L  L+ +YRRA TITLI+DNY+IHKSR    
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKQNPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCRSMWQLLKKVRHFMKTVSPF  333
            WL++NPKF++++ P YSPW+N +E LW +LH+T+TRNHQCR MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

26) EPYR_00680 in NC_017390


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  338 bits (1267),  Expect = 3e-94, Method: Compositional matrix adjust.
 Identities = 185/304 (61%), Positives = 248/304 (82%), Gaps = 0/304 (0%)

Query  34   ILMLHRGNRVSHVARTLCCARSSVGRWINWFTLSGVEGLKSLPAGRSRRWPFEHICTLLR  93
            +LMLHRG+ VSH ARTLC ARSSVGRWINWFTL G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELIKHSPGDFGYQRSRWSTELLAIKIKDITGCRLHAGTVRRWLPAAGLVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKIK++ +  +  +TV R L  AG+VWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAVIRQALDKCSAEHPVFYEDEVDIHLNPKIGADWQLRGQQRRVVTPGQNEKY  213
            DPH  EK+A I+ AL+K    +PVFYEDEVDI+LNPKIGADW ++GQQ+R+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSYVGGNSKSSVLFISLLKHLKASYRRAKTITLIVDNYIIHKSRETLS  273
            YL+G++++ TG+V YV+G SK+S+LFI++L  L+ +YRRA TITLI+DNY+IHKSR    
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKQNPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCRSMWQLLKKVRHFMKTVSPF  333
            WL++NPKF++++ P YSPW+N +E LW +LH+T+TRNHQCR MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

27) EPYR_01290 in NC_017390


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  338 bits (1267),  Expect = 3e-94, Method: Compositional matrix adjust.
 Identities = 185/304 (61%), Positives = 248/304 (82%), Gaps = 0/304 (0%)

Query  34   ILMLHRGNRVSHVARTLCCARSSVGRWINWFTLSGVEGLKSLPAGRSRRWPFEHICTLLR  93
            +LMLHRG+ VSH ARTLC ARSSVGRWINWFTL G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELIKHSPGDFGYQRSRWSTELLAIKIKDITGCRLHAGTVRRWLPAAGLVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKIK++ +  +  +TV R L  AG+VWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAVIRQALDKCSAEHPVFYEDEVDIHLNPKIGADWQLRGQQRRVVTPGQNEKY  213
            DPH  EK+A I+ AL+K    +PVFYEDEVDI+LNPKIGADW ++GQQ+R+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSYVGGNSKSSVLFISLLKHLKASYRRAKTITLIVDNYIIHKSRETLS  273
            YL+G++++ TG+V YV+G SK+S+LFI++L  L+ +YRRA TITLI+DNY+IHKSR    
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKQNPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCRSMWQLLKKVRHFMKTVSPF  333
            WL++NPKF++++ P YSPW+N +E LW +LH+T+TRNHQCR MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

28) EPYR_01777 in NC_017390


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  338 bits (1267),  Expect = 3e-94, Method: Compositional matrix adjust.
 Identities = 185/304 (61%), Positives = 248/304 (82%), Gaps = 0/304 (0%)

Query  34   ILMLHRGNRVSHVARTLCCARSSVGRWINWFTLSGVEGLKSLPAGRSRRWPFEHICTLLR  93
            +LMLHRG+ VSH ARTLC ARSSVGRWINWFTL G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELIKHSPGDFGYQRSRWSTELLAIKIKDITGCRLHAGTVRRWLPAAGLVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKIK++ +  +  +TV R L  AG+VWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAVIRQALDKCSAEHPVFYEDEVDIHLNPKIGADWQLRGQQRRVVTPGQNEKY  213
            DPH  EK+A I+ AL+K    +PVFYEDEVDI+LNPKIGADW ++GQQ+R+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSYVGGNSKSSVLFISLLKHLKASYRRAKTITLIVDNYIIHKSRETLS  273
            YL+G++++ TG+V YV+G SK+S+LFI++L  L+ +YRRA TITLI+DNY+IHKSR    
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKQNPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCRSMWQLLKKVRHFMKTVSPF  333
            WL++NPKF++++ P YSPW+N +E LW +LH+T+TRNHQCR MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

29) EPYR_02290 in NC_017390


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  338 bits (1267),  Expect = 3e-94, Method: Compositional matrix adjust.
 Identities = 185/304 (61%), Positives = 248/304 (82%), Gaps = 0/304 (0%)

Query  34   ILMLHRGNRVSHVARTLCCARSSVGRWINWFTLSGVEGLKSLPAGRSRRWPFEHICTLLR  93
            +LMLHRG+ VSH ARTLC ARSSVGRWINWFTL G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELIKHSPGDFGYQRSRWSTELLAIKIKDITGCRLHAGTVRRWLPAAGLVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKIK++ +  +  +TV R L  AG+VWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAVIRQALDKCSAEHPVFYEDEVDIHLNPKIGADWQLRGQQRRVVTPGQNEKY  213
            DPH  EK+A I+ AL+K    +PVFYEDEVDI+LNPKIGADW ++GQQ+R+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSYVGGNSKSSVLFISLLKHLKASYRRAKTITLIVDNYIIHKSRETLS  273
            YL+G++++ TG+V YV+G SK+S+LFI++L  L+ +YRRA TITLI+DNY+IHKSR    
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKQNPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCRSMWQLLKKVRHFMKTVSPF  333
            WL++NPKF++++ P YSPW+N +E LW +LH+T+TRNHQCR MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

30) EPYR_02532 in NC_017390


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  338 bits (1267),  Expect = 3e-94, Method: Compositional matrix adjust.
 Identities = 185/304 (61%), Positives = 248/304 (82%), Gaps = 0/304 (0%)

Query  34   ILMLHRGNRVSHVARTLCCARSSVGRWINWFTLSGVEGLKSLPAGRSRRWPFEHICTLLR  93
            +LMLHRG+ VSH ARTLC ARSSVGRWINWFTL G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELIKHSPGDFGYQRSRWSTELLAIKIKDITGCRLHAGTVRRWLPAAGLVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKIK++ +  +  +TV R L  AG+VWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAVIRQALDKCSAEHPVFYEDEVDIHLNPKIGADWQLRGQQRRVVTPGQNEKY  213
            DPH  EK+A I+ AL+K    +PVFYEDEVDI+LNPKIGADW ++GQQ+R+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSYVGGNSKSSVLFISLLKHLKASYRRAKTITLIVDNYIIHKSRETLS  273
            YL+G++++ TG+V YV+G SK+S+LFI++L  L+ +YRRA TITLI+DNY+IHKSR    
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKQNPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCRSMWQLLKKVRHFMKTVSPF  333
            WL++NPKF++++ P YSPW+N +E LW +LH+T+TRNHQCR MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

31) EPYR_03195 in NC_017390


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  338 bits (1267),  Expect = 3e-94, Method: Compositional matrix adjust.
 Identities = 185/304 (61%), Positives = 248/304 (82%), Gaps = 0/304 (0%)

Query  34   ILMLHRGNRVSHVARTLCCARSSVGRWINWFTLSGVEGLKSLPAGRSRRWPFEHICTLLR  93
            +LMLHRG+ VSH ARTLC ARSSVGRWINWFTL G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELIKHSPGDFGYQRSRWSTELLAIKIKDITGCRLHAGTVRRWLPAAGLVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKIK++ +  +  +TV R L  AG+VWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAVIRQALDKCSAEHPVFYEDEVDIHLNPKIGADWQLRGQQRRVVTPGQNEKY  213
            DPH  EK+A I+ AL+K    +PVFYEDEVDI+LNPKIGADW ++GQQ+R+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSYVGGNSKSSVLFISLLKHLKASYRRAKTITLIVDNYIIHKSRETLS  273
            YL+G++++ TG+V YV+G SK+S+LFI++L  L+ +YRRA TITLI+DNY+IHKSR    
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKQNPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCRSMWQLLKKVRHFMKTVSPF  333
            WL++NPKF++++ P YSPW+N +E LW +LH+T+TRNHQCR MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

32) EPYR_03444 in NC_017390


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  338 bits (1267),  Expect = 3e-94, Method: Compositional matrix adjust.
 Identities = 185/304 (61%), Positives = 248/304 (82%), Gaps = 0/304 (0%)

Query  34   ILMLHRGNRVSHVARTLCCARSSVGRWINWFTLSGVEGLKSLPAGRSRRWPFEHICTLLR  93
            +LMLHRG+ VSH ARTLC ARSSVGRWINWFTL G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELIKHSPGDFGYQRSRWSTELLAIKIKDITGCRLHAGTVRRWLPAAGLVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKIK++ +  +  +TV R L  AG+VWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAVIRQALDKCSAEHPVFYEDEVDIHLNPKIGADWQLRGQQRRVVTPGQNEKY  213
            DPH  EK+A I+ AL+K    +PVFYEDEVDI+LNPKIGADW ++GQQ+R+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSYVGGNSKSSVLFISLLKHLKASYRRAKTITLIVDNYIIHKSRETLS  273
            YL+G++++ TG+V YV+G SK+S+LFI++L  L+ +YRRA TITLI+DNY+IHKSR    
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKQNPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCRSMWQLLKKVRHFMKTVSPF  333
            WL++NPKF++++ P YSPW+N +E LW +LH+T+TRNHQCR MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

33) EPYR_03798 in NC_017390


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  338 bits (1267),  Expect = 3e-94, Method: Compositional matrix adjust.
 Identities = 185/304 (61%), Positives = 248/304 (82%), Gaps = 0/304 (0%)

Query  34   ILMLHRGNRVSHVARTLCCARSSVGRWINWFTLSGVEGLKSLPAGRSRRWPFEHICTLLR  93
            +LMLHRG+ VSH ARTLC ARSSVGRWINWFTL G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELIKHSPGDFGYQRSRWSTELLAIKIKDITGCRLHAGTVRRWLPAAGLVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKIK++ +  +  +TV R L  AG+VWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAVIRQALDKCSAEHPVFYEDEVDIHLNPKIGADWQLRGQQRRVVTPGQNEKY  213
            DPH  EK+A I+ AL+K    +PVFYEDEVDI+LNPKIGADW ++GQQ+R+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSYVGGNSKSSVLFISLLKHLKASYRRAKTITLIVDNYIIHKSRETLS  273
            YL+G++++ TG+V YV+G SK+S+LFI++L  L+ +YRRA TITLI+DNY+IHKSR    
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKQNPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCRSMWQLLKKVRHFMKTVSPF  333
            WL++NPKF++++ P YSPW+N +E LW +LH+T+TRNHQCR MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

34) EpC_00690 in NC_012214


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  338 bits (1267),  Expect = 3e-94, Method: Compositional matrix adjust.
 Identities = 185/304 (61%), Positives = 248/304 (82%), Gaps = 0/304 (0%)

Query  34   ILMLHRGNRVSHVARTLCCARSSVGRWINWFTLSGVEGLKSLPAGRSRRWPFEHICTLLR  93
            +LMLHRG+ VSH ARTLC ARSSVGRWINWFTL G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELIKHSPGDFGYQRSRWSTELLAIKIKDITGCRLHAGTVRRWLPAAGLVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKIK++ +  +  +TV R L  AG+VWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAVIRQALDKCSAEHPVFYEDEVDIHLNPKIGADWQLRGQQRRVVTPGQNEKY  213
            DPH  EK+A I+ AL+K    +PVFYEDEVDI+LNPKIGADW ++GQQ+R+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSYVGGNSKSSVLFISLLKHLKASYRRAKTITLIVDNYIIHKSRETLS  273
            YL+G++++ TG+V YV+G SK+S+LFI++L  L+ +YRRA TITLI+DNY+IHKSR    
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKQNPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCRSMWQLLKKVRHFMKTVSPF  333
            WL++NPKF++++ P YSPW+N +E LW +LH+T+TRNHQCR MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

35) EpC_04540 in NC_012214


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  338 bits (1267),  Expect = 3e-94, Method: Compositional matrix adjust.
 Identities = 185/304 (61%), Positives = 248/304 (82%), Gaps = 0/304 (0%)

Query  34   ILMLHRGNRVSHVARTLCCARSSVGRWINWFTLSGVEGLKSLPAGRSRRWPFEHICTLLR  93
            +LMLHRG+ VSH ARTLC ARSSVGRWINWFTL G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELIKHSPGDFGYQRSRWSTELLAIKIKDITGCRLHAGTVRRWLPAAGLVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKIK++ +  +  +TV R L  AG+VWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAVIRQALDKCSAEHPVFYEDEVDIHLNPKIGADWQLRGQQRRVVTPGQNEKY  213
            DPH  EK+A I+ AL+K    +PVFYEDEVDI+LNPKIGADW ++GQQ+R+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSYVGGNSKSSVLFISLLKHLKASYRRAKTITLIVDNYIIHKSRETLS  273
            YL+G++++ TG+V YV+G SK+S+LFI++L  L+ +YRRA TITLI+DNY+IHKSR    
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKQNPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCRSMWQLLKKVRHFMKTVSPF  333
            WL++NPKF++++ P YSPW+N +E LW +LH+T+TRNHQCR MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

36) EpC_06500 in NC_012214


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  338 bits (1267),  Expect = 3e-94, Method: Compositional matrix adjust.
 Identities = 185/304 (61%), Positives = 248/304 (82%), Gaps = 0/304 (0%)

Query  34   ILMLHRGNRVSHVARTLCCARSSVGRWINWFTLSGVEGLKSLPAGRSRRWPFEHICTLLR  93
            +LMLHRG+ VSH ARTLC ARSSVGRWINWFTL G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELIKHSPGDFGYQRSRWSTELLAIKIKDITGCRLHAGTVRRWLPAAGLVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKIK++ +  +  +TV R L  AG+VWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAVIRQALDKCSAEHPVFYEDEVDIHLNPKIGADWQLRGQQRRVVTPGQNEKY  213
            DPH  EK+A I+ AL+K    +PVFYEDEVDI+LNPKIGADW ++GQQ+R+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSYVGGNSKSSVLFISLLKHLKASYRRAKTITLIVDNYIIHKSRETLS  273
            YL+G++++ TG+V YV+G SK+S+LFI++L  L+ +YRRA TITLI+DNY+IHKSR    
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKQNPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCRSMWQLLKKVRHFMKTVSPF  333
            WL++NPKF++++ P YSPW+N +E LW +LH+T+TRNHQCR MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

37) EpC_16520 in NC_012214


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  338 bits (1267),  Expect = 3e-94, Method: Compositional matrix adjust.
 Identities = 185/304 (61%), Positives = 248/304 (82%), Gaps = 0/304 (0%)

Query  34   ILMLHRGNRVSHVARTLCCARSSVGRWINWFTLSGVEGLKSLPAGRSRRWPFEHICTLLR  93
            +LMLHRG+ VSH ARTLC ARSSVGRWINWFTL G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELIKHSPGDFGYQRSRWSTELLAIKIKDITGCRLHAGTVRRWLPAAGLVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKIK++ +  +  +TV R L  AG+VWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAVIRQALDKCSAEHPVFYEDEVDIHLNPKIGADWQLRGQQRRVVTPGQNEKY  213
            DPH  EK+A I+ AL+K    +PVFYEDEVDI+LNPKIGADW ++GQQ+R+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSYVGGNSKSSVLFISLLKHLKASYRRAKTITLIVDNYIIHKSRETLS  273
            YL+G++++ TG+V YV+G SK+S+LFI++L  L+ +YRRA TITLI+DNY+IHKSR    
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKQNPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCRSMWQLLKKVRHFMKTVSPF  333
            WL++NPKF++++ P YSPW+N +E LW +LH+T+TRNHQCR MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

38) EpC_21300 in NC_012214


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  338 bits (1267),  Expect = 3e-94, Method: Compositional matrix adjust.
 Identities = 185/304 (61%), Positives = 248/304 (82%), Gaps = 0/304 (0%)

Query  34   ILMLHRGNRVSHVARTLCCARSSVGRWINWFTLSGVEGLKSLPAGRSRRWPFEHICTLLR  93
            +LMLHRG+ VSH ARTLC ARSSVGRWINWFTL G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELIKHSPGDFGYQRSRWSTELLAIKIKDITGCRLHAGTVRRWLPAAGLVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKIK++ +  +  +TV R L  AG+VWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAVIRQALDKCSAEHPVFYEDEVDIHLNPKIGADWQLRGQQRRVVTPGQNEKY  213
            DPH  EK+A I+ AL+K    +PVFYEDEVDI+LNPKIGADW ++GQQ+R+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSYVGGNSKSSVLFISLLKHLKASYRRAKTITLIVDNYIIHKSRETLS  273
            YL+G++++ TG+V YV+G SK+S+LFI++L  L+ +YRRA TITLI+DNY+IHKSR    
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKQNPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCRSMWQLLKKVRHFMKTVSPF  333
            WL++NPKF++++ P YSPW+N +E LW +LH+T+TRNHQCR MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

39) EpC_23420 in NC_012214


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  338 bits (1267),  Expect = 3e-94, Method: Compositional matrix adjust.
 Identities = 185/304 (61%), Positives = 248/304 (82%), Gaps = 0/304 (0%)

Query  34   ILMLHRGNRVSHVARTLCCARSSVGRWINWFTLSGVEGLKSLPAGRSRRWPFEHICTLLR  93
            +LMLHRG+ VSH ARTLC ARSSVGRWINWFTL G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELIKHSPGDFGYQRSRWSTELLAIKIKDITGCRLHAGTVRRWLPAAGLVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKIK++ +  +  +TV R L  AG+VWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAVIRQALDKCSAEHPVFYEDEVDIHLNPKIGADWQLRGQQRRVVTPGQNEKY  213
            DPH  EK+A I+ AL+K    +PVFYEDEVDI+LNPKIGADW ++GQQ+R+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSYVGGNSKSSVLFISLLKHLKASYRRAKTITLIVDNYIIHKSRETLS  273
            YL+G++++ TG+V YV+G SK+S+LFI++L  L+ +YRRA TITLI+DNY+IHKSR    
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKQNPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCRSMWQLLKKVRHFMKTVSPF  333
            WL++NPKF++++ P YSPW+N +E LW +LH+T+TRNHQCR MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

40) EpC_29550 in NC_012214


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  338 bits (1267),  Expect = 3e-94, Method: Compositional matrix adjust.
 Identities = 185/304 (61%), Positives = 248/304 (82%), Gaps = 0/304 (0%)

Query  34   ILMLHRGNRVSHVARTLCCARSSVGRWINWFTLSGVEGLKSLPAGRSRRWPFEHICTLLR  93
            +LMLHRG+ VSH ARTLC ARSSVGRWINWFTL G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELIKHSPGDFGYQRSRWSTELLAIKIKDITGCRLHAGTVRRWLPAAGLVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKIK++ +  +  +TV R L  AG+VWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAVIRQALDKCSAEHPVFYEDEVDIHLNPKIGADWQLRGQQRRVVTPGQNEKY  213
            DPH  EK+A I+ AL+K    +PVFYEDEVDI+LNPKIGADW ++GQQ+R+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSYVGGNSKSSVLFISLLKHLKASYRRAKTITLIVDNYIIHKSRETLS  273
            YL+G++++ TG+V YV+G SK+S+LFI++L  L+ +YRRA TITLI+DNY+IHKSR    
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKQNPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCRSMWQLLKKVRHFMKTVSPF  333
            WL++NPKF++++ P YSPW+N +E LW +LH+T+TRNHQCR MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

41) EpC_31900 in NC_012214


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  338 bits (1267),  Expect = 3e-94, Method: Compositional matrix adjust.
 Identities = 185/304 (61%), Positives = 248/304 (82%), Gaps = 0/304 (0%)

Query  34   ILMLHRGNRVSHVARTLCCARSSVGRWINWFTLSGVEGLKSLPAGRSRRWPFEHICTLLR  93
            +LMLHRG+ VSH ARTLC ARSSVGRWINWFTL G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELIKHSPGDFGYQRSRWSTELLAIKIKDITGCRLHAGTVRRWLPAAGLVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKIK++ +  +  +TV R L  AG+VWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAVIRQALDKCSAEHPVFYEDEVDIHLNPKIGADWQLRGQQRRVVTPGQNEKY  213
            DPH  EK+A I+ AL+K    +PVFYEDEVDI+LNPKIGADW ++GQQ+R+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSYVGGNSKSSVLFISLLKHLKASYRRAKTITLIVDNYIIHKSRETLS  273
            YL+G++++ TG+V YV+G SK+S+LFI++L  L+ +YRRA TITLI+DNY+IHKSR    
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKQNPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCRSMWQLLKKVRHFMKTVSPF  333
            WL++NPKF++++ P YSPW+N +E LW +LH+T+TRNHQCR MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

42) EpC_35310 in NC_012214


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  338 bits (1267),  Expect = 3e-94, Method: Compositional matrix adjust.
 Identities = 185/304 (61%), Positives = 248/304 (82%), Gaps = 0/304 (0%)

Query  34   ILMLHRGNRVSHVARTLCCARSSVGRWINWFTLSGVEGLKSLPAGRSRRWPFEHICTLLR  93
            +LMLHRG+ VSH ARTLC ARSSVGRWINWFTL G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELIKHSPGDFGYQRSRWSTELLAIKIKDITGCRLHAGTVRRWLPAAGLVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKIK++ +  +  +TV R L  AG+VWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAVIRQALDKCSAEHPVFYEDEVDIHLNPKIGADWQLRGQQRRVVTPGQNEKY  213
            DPH  EK+A I+ AL+K    +PVFYEDEVDI+LNPKIGADW ++GQQ+R+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSYVGGNSKSSVLFISLLKHLKASYRRAKTITLIVDNYIIHKSRETLS  273
            YL+G++++ TG+V YV+G SK+S+LFI++L  L+ +YRRA TITLI+DNY+IHKSR    
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKQNPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCRSMWQLLKKVRHFMKTVSPF  333
            WL++NPKF++++ P YSPW+N +E LW +LH+T+TRNHQCR MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

43) CP0075 in NC_004851


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  337 bits (1264),  Expect = 5e-94, Method: Compositional matrix adjust.
 Identities = 186/304 (62%), Positives = 247/304 (82%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDRVSDVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLR  93
            MLMLHRGD VS+ ARTLC ARSSVGRWINWFT  G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHSPGDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSVGIVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  ++ +TV R L   GIVWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLHPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+AAI+ AL+     +PVFYEDEVDI+L+PKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSYVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQS  273
            YL+G++++ TG+V YV+G SK+S LFI++L +L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKENPKFRGIYQPVYSPWVNHVERLWQALHDTITRNHQCRSMWQLLKKVRHFMETVSPF  333
            WL+ENPKF+ ++ P YSPW+N +E LW +LH+T+TRNHQCR MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

44) SSON_3040 in NC_007384


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  337 bits (1263),  Expect = 7e-94, Method: Compositional matrix adjust.
 Identities = 186/304 (62%), Positives = 248/304 (82%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDRVSDVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLR  93
            MLMLHRGD VS+ ARTLC ARSSVGRWINWFT  G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHSPGDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  ++ +TV R L  AGIVWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+AAI+ AL+     +PVFYEDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSVTGKVSCVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQS  273
            YL+G+++++TG+V  V+G SK+S LFI++L +L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKENPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCSSMWQLLKKVRHFMETVSPF  333
            WL+ENPKF++++ P YSPW+N +E LW +LH+T+TRNHQC  MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

45) SSON_P012 in NC_007385


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  336 bits (1260),  Expect = 1e-93, Method: Compositional matrix adjust.
 Identities = 186/304 (62%), Positives = 248/304 (82%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDRVSDAARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLR  93
            MLMLHRGD VS++ARTLC ARSSVGRWINWFT  G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHSPGDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  ++ +TV R L  AGIVWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+AAI+ AL+     +PVFYEDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSCVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQS  273
            YL+G++++ TG+V  V+G SK+S LFI++L +L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKENPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCSSMWQLLKKVRHFMETVSPF  333
            WL+ENPKF++++ P YSPW+N +E LW +LH+T+TRNHQC  MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

46) SSON_P006 in NC_007385


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  335 bits (1259),  Expect = 1e-93, Method: Compositional matrix adjust.
 Identities = 186/304 (62%), Positives = 247/304 (82%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDRVSDVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLR  93
            MLMLHRGD VS+ ARTLC ARSSVGRWINWFT  G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHSPGDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  ++ +TV R L  AGIVWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+AAI+ AL+     +PVFYEDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSCVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQS  273
            YL+G++++ TG+V  V+G SK+S LFI++L +L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKENPKFRVIYQPVYSPWMNHVERLWQALHDTITRNHQCSSMWQLLKKVRHFMETVSPF  333
            WL+ENPKF++++ P YSPW+N +E LW +LH+T+TRNHQC  MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

47) SSON_P228 in NC_007385


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  335 bits (1259),  Expect = 1e-93, Method: Compositional matrix adjust.
 Identities = 186/304 (62%), Positives = 247/304 (82%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDRVSDVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLR  93
            MLMLHRGD VS+ ARTLC ARSSVGRWINWFT  G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHSPGDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  ++ +TV R L  AGIVWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+AAI+ AL+     +PVFYEDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSCVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQS  273
            YL+G++++ TG+V  V+G SK+S LFI++L +L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKENPKFRVIYQPVYSPWMNHVERLWQALHDTITRNHQCSSMWQLLKKVRHFMETVSPF  333
            WL+ENPKF++++ P YSPW+N +E LW +LH+T+TRNHQC  MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

48) A225_R1p0105 in NC_018107


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  335 bits (1259),  Expect = 1e-93, Method: Compositional matrix adjust.
 Identities = 185/304 (61%), Positives = 245/304 (81%), Gaps = 0/304 (0%)

Query  34   MLMLHRGERVSDVARTLCCARSSVGRWINWFTHSGIEGLKSLPAGRSRRWPFEHICTLLR  93
            MLMLHRG+ VS+ ARTLC ARSSVGRWINWFT  G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELIKHSPGDFGYQRSRWSTELLAIKINEITGCQLHAGTVRRWLPSAGLVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  +  +TV R L  AG+VWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAVIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+A I+ AL+     +PVFYEDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSYVGGNSKSSALFIALLKHLKATYRRAKTITLIVDNYIIHKSRETQR  273
            YL+G++++ TG+V YV+G SK+S LFI +L  L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKANPKFRVIYQPVYSPWVNHVEQLWQALHDTITRNHQCRSMWQLLKKVRHFMETASPF  333
            WL+ NPKF++++ P YSPW+N +E LW +LH+T+TRNHQCR MWQLL KV++FM  ASPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

49) A225_R1p0870 in NC_018107


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  335 bits (1259),  Expect = 1e-93, Method: Compositional matrix adjust.
 Identities = 185/304 (61%), Positives = 245/304 (81%), Gaps = 0/304 (0%)

Query  34   MLMLHRGERVSDVARTLCCARSSVGRWINWFTHSGIEGLKSLPAGRSRRWPFEHICTLLR  93
            MLMLHRG+ VS+ ARTLC ARSSVGRWINWFT  G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELIKHSPGDFGYQRSRWSTELLAIKINEITGCQLHAGTVRRWLPSAGLVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  +  +TV R L  AG+VWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAVIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+A I+ AL+     +PVFYEDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSYVGGNSKSSALFIALLKHLKATYRRAKTITLIVDNYIIHKSRETQR  273
            YL+G++++ TG+V YV+G SK+S LFI +L  L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKANPKFRVIYQPVYSPWVNHVEQLWQALHDTITRNHQCRSMWQLLKKVRHFMETASPF  333
            WL+ NPKF++++ P YSPW+N +E LW +LH+T+TRNHQCR MWQLL KV++FM  ASPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

50) A225_NDM1p0425 in NC_021501


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  335 bits (1258),  Expect = 1e-93, Method: Compositional matrix adjust.
 Identities = 185/304 (61%), Positives = 245/304 (81%), Gaps = 0/304 (0%)

Query  20   MLMLHRGERVSDVARTLCCARSSVGRWINWFTHSGIEGLKSLPAGRSRRWPFEHICTLLR  79
            MLMLHRG+ VS+ ARTLC ARSSVGRWINWFT  G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  80   ELIKHSPGDFGYQRSRWSTELLAIKINEITGCQLHAGTVRRWLPSAGLVWRRAAPTLRIR  139
             L++++P +FG  RSRWST LL+IKI+++ +  +  +TV R L  AG+VWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  140  DPHKDEKMAVIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKY  199
            DPH  EK+A I+ AL+     +PVFYEDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  200  YLAGALHSGTGKVSYVGGNSKSSALFIALLKHLKATYRRAKTITLIVDNYIIHKSRETQR  259
            YL+G++++ TG+V YV+G SK+S LFI +L  L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  260  WLKANPKFRVIYQPVYSPWVNHVEQLWQALHDTITRNHQCRSMWQLLKKVRHFMETASPF  319
            WL+ NPKF++++ P YSPW+N +E LW +LH+T+TRNHQCR MWQLL KV++FM  ASPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  320  PGGK  323
            PG++
Sbjct  301  PGSQ  304

51) SSON53_01530 in NC_016822


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  335 bits (1258),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 186/304 (62%), Positives = 247/304 (82%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDRVSDVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLR  93
            MLMLHRGD VS+ ARTLC ARSSVGRWINWFT  G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHSPGDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  ++ +TV R L  AGIVWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+AAI+ AL+     +PVFYEDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSCVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQS  273
            YL+G++++ TG+V  V+G SK+S LFI++L +L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKENPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCSSMWQLLKKVRHFMETVSPF  333
            WL+ENPKF++++ P YSPW+N +E LW +LH+T+TRNHQC  MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

52) SSON53_06420 in NC_016822


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  335 bits (1258),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 186/304 (62%), Positives = 247/304 (82%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDRVSDVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLR  93
            MLMLHRGD VS+ ARTLC ARSSVGRWINWFT  G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHSPGDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  ++ +TV R L  AGIVWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+AAI+ AL+     +PVFYEDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSCVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQS  273
            YL+G++++ TG+V  V+G SK+S LFI++L +L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKENPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCSSMWQLLKKVRHFMETVSPF  333
            WL+ENPKF++++ P YSPW+N +E LW +LH+T+TRNHQC  MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

53) SSON53_08405 in NC_016822


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  335 bits (1258),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 186/304 (62%), Positives = 247/304 (82%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDRVSDVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLR  93
            MLMLHRGD VS+ ARTLC ARSSVGRWINWFT  G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHSPGDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  ++ +TV R L  AGIVWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+AAI+ AL+     +PVFYEDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSCVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQS  273
            YL+G++++ TG+V  V+G SK+S LFI++L +L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKENPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCSSMWQLLKKVRHFMETVSPF  333
            WL+ENPKF++++ P YSPW+N +E LW +LH+T+TRNHQC  MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

54) SSON53_09080 in NC_016822


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  335 bits (1258),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 186/304 (62%), Positives = 247/304 (82%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDRVSDVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLR  93
            MLMLHRGD VS+ ARTLC ARSSVGRWINWFT  G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHSPGDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  ++ +TV R L  AGIVWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+AAI+ AL+     +PVFYEDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSCVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQS  273
            YL+G++++ TG+V  V+G SK+S LFI++L +L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKENPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCSSMWQLLKKVRHFMETVSPF  333
            WL+ENPKF++++ P YSPW+N +E LW +LH+T+TRNHQC  MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

55) SSON53_09675 in NC_016822


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  335 bits (1258),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 186/304 (62%), Positives = 247/304 (82%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDRVSDVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLR  93
            MLMLHRGD VS+ ARTLC ARSSVGRWINWFT  G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHSPGDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  ++ +TV R L  AGIVWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+AAI+ AL+     +PVFYEDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSCVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQS  273
            YL+G++++ TG+V  V+G SK+S LFI++L +L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKENPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCSSMWQLLKKVRHFMETVSPF  333
            WL+ENPKF++++ P YSPW+N +E LW +LH+T+TRNHQC  MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

56) SSON53_10450 in NC_016822


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  335 bits (1258),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 186/304 (62%), Positives = 247/304 (82%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDRVSDVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLR  93
            MLMLHRGD VS+ ARTLC ARSSVGRWINWFT  G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHSPGDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  ++ +TV R L  AGIVWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+AAI+ AL+     +PVFYEDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSCVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQS  273
            YL+G++++ TG+V  V+G SK+S LFI++L +L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKENPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCSSMWQLLKKVRHFMETVSPF  333
            WL+ENPKF++++ P YSPW+N +E LW +LH+T+TRNHQC  MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

57) SSON53_16540 in NC_016822


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  335 bits (1258),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 186/304 (62%), Positives = 247/304 (82%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDRVSDVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLR  93
            MLMLHRGD VS+ ARTLC ARSSVGRWINWFT  G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHSPGDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  ++ +TV R L  AGIVWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+AAI+ AL+     +PVFYEDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSCVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQS  273
            YL+G++++ TG+V  V+G SK+S LFI++L +L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKENPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCSSMWQLLKKVRHFMETVSPF  333
            WL+ENPKF++++ P YSPW+N +E LW +LH+T+TRNHQC  MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

58) SSON53_16930 in NC_016822


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  335 bits (1258),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 186/304 (62%), Positives = 247/304 (82%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDRVSDVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLR  93
            MLMLHRGD VS+ ARTLC ARSSVGRWINWFT  G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHSPGDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  ++ +TV R L  AGIVWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+AAI+ AL+     +PVFYEDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSCVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQS  273
            YL+G++++ TG+V  V+G SK+S LFI++L +L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKENPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCSSMWQLLKKVRHFMETVSPF  333
            WL+ENPKF++++ P YSPW+N +E LW +LH+T+TRNHQC  MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

59) SSON53_17605 in NC_016822


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  335 bits (1258),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 186/304 (62%), Positives = 247/304 (82%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDRVSDVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLR  93
            MLMLHRGD VS+ ARTLC ARSSVGRWINWFT  G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHSPGDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  ++ +TV R L  AGIVWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+AAI+ AL+     +PVFYEDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSCVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQS  273
            YL+G++++ TG+V  V+G SK+S LFI++L +L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKENPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCSSMWQLLKKVRHFMETVSPF  333
            WL+ENPKF++++ P YSPW+N +E LW +LH+T+TRNHQC  MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

60) SSON53_18120 in NC_016822


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  335 bits (1258),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 186/304 (62%), Positives = 247/304 (82%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDRVSDVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLR  93
            MLMLHRGD VS+ ARTLC ARSSVGRWINWFT  G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHSPGDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  ++ +TV R L  AGIVWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+AAI+ AL+     +PVFYEDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSCVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQS  273
            YL+G++++ TG+V  V+G SK+S LFI++L +L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKENPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCSSMWQLLKKVRHFMETVSPF  333
            WL+ENPKF++++ P YSPW+N +E LW +LH+T+TRNHQC  MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

61) SSON53_18795 in NC_016822


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  335 bits (1258),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 186/304 (62%), Positives = 247/304 (82%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDRVSDVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLR  93
            MLMLHRGD VS+ ARTLC ARSSVGRWINWFT  G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHSPGDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  ++ +TV R L  AGIVWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+AAI+ AL+     +PVFYEDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSCVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQS  273
            YL+G++++ TG+V  V+G SK+S LFI++L +L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKENPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCSSMWQLLKKVRHFMETVSPF  333
            WL+ENPKF++++ P YSPW+N +E LW +LH+T+TRNHQC  MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

62) SSON_0289 in NC_007384


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  335 bits (1258),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 186/304 (62%), Positives = 247/304 (82%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDRVSDVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLR  93
            MLMLHRGD VS+ ARTLC ARSSVGRWINWFT  G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHSPGDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  ++ +TV R L  AGIVWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+AAI+ AL+     +PVFYEDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSCVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQS  273
            YL+G++++ TG+V  V+G SK+S LFI++L +L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKENPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCSSMWQLLKKVRHFMETVSPF  333
            WL+ENPKF++++ P YSPW+N +E LW +LH+T+TRNHQC  MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

63) SSON_1009 in NC_007384


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  335 bits (1258),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 186/304 (62%), Positives = 247/304 (82%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDRVSDVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLR  93
            MLMLHRGD VS+ ARTLC ARSSVGRWINWFT  G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHSPGDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  ++ +TV R L  AGIVWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+AAI+ AL+     +PVFYEDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSCVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQS  273
            YL+G++++ TG+V  V+G SK+S LFI++L +L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKENPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCSSMWQLLKKVRHFMETVSPF  333
            WL+ENPKF++++ P YSPW+N +E LW +LH+T+TRNHQC  MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

64) SSON_1198 in NC_007384


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  335 bits (1258),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 186/304 (62%), Positives = 247/304 (82%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDRVSDVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLR  93
            MLMLHRGD VS+ ARTLC ARSSVGRWINWFT  G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHSPGDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  ++ +TV R L  AGIVWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+AAI+ AL+     +PVFYEDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSCVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQS  273
            YL+G++++ TG+V  V+G SK+S LFI++L +L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKENPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCSSMWQLLKKVRHFMETVSPF  333
            WL+ENPKF++++ P YSPW+N +E LW +LH+T+TRNHQC  MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

65) SSON_1451 in NC_007384


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  335 bits (1258),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 186/304 (62%), Positives = 247/304 (82%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDRVSDVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLR  93
            MLMLHRGD VS+ ARTLC ARSSVGRWINWFT  G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHSPGDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  ++ +TV R L  AGIVWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+AAI+ AL+     +PVFYEDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSCVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQS  273
            YL+G++++ TG+V  V+G SK+S LFI++L +L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKENPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCSSMWQLLKKVRHFMETVSPF  333
            WL+ENPKF++++ P YSPW+N +E LW +LH+T+TRNHQC  MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

66) SSON_1612 in NC_007384


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  335 bits (1258),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 186/304 (62%), Positives = 247/304 (82%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDRVSDVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLR  93
            MLMLHRGD VS+ ARTLC ARSSVGRWINWFT  G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHSPGDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  ++ +TV R L  AGIVWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+AAI+ AL+     +PVFYEDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSCVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQS  273
            YL+G++++ TG+V  V+G SK+S LFI++L +L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKENPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCSSMWQLLKKVRHFMETVSPF  333
            WL+ENPKF++++ P YSPW+N +E LW +LH+T+TRNHQC  MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

67) SSON_1654 in NC_007384


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  335 bits (1258),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 186/304 (62%), Positives = 247/304 (82%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDRVSDVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLR  93
            MLMLHRGD VS+ ARTLC ARSSVGRWINWFT  G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHSPGDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  ++ +TV R L  AGIVWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+AAI+ AL+     +PVFYEDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSCVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQS  273
            YL+G++++ TG+V  V+G SK+S LFI++L +L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKENPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCSSMWQLLKKVRHFMETVSPF  333
            WL+ENPKF++++ P YSPW+N +E LW +LH+T+TRNHQC  MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

68) SSON_1920 in NC_007384


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  335 bits (1258),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 186/304 (62%), Positives = 247/304 (82%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDRVSDVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLR  93
            MLMLHRGD VS+ ARTLC ARSSVGRWINWFT  G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHSPGDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  ++ +TV R L  AGIVWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+AAI+ AL+     +PVFYEDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSCVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQS  273
            YL+G++++ TG+V  V+G SK+S LFI++L +L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKENPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCSSMWQLLKKVRHFMETVSPF  333
            WL+ENPKF++++ P YSPW+N +E LW +LH+T+TRNHQC  MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

69) SSON_2039 in NC_007384


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  335 bits (1258),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 186/304 (62%), Positives = 247/304 (82%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDRVSDVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLR  93
            MLMLHRGD VS+ ARTLC ARSSVGRWINWFT  G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHSPGDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  ++ +TV R L  AGIVWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+AAI+ AL+     +PVFYEDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSCVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQS  273
            YL+G++++ TG+V  V+G SK+S LFI++L +L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKENPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCSSMWQLLKKVRHFMETVSPF  333
            WL+ENPKF++++ P YSPW+N +E LW +LH+T+TRNHQC  MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

70) SSON_3114 in NC_007384


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  335 bits (1258),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 186/304 (62%), Positives = 247/304 (82%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDRVSDVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLR  93
            MLMLHRGD VS+ ARTLC ARSSVGRWINWFT  G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHSPGDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  ++ +TV R L  AGIVWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+AAI+ AL+     +PVFYEDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSCVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQS  273
            YL+G++++ TG+V  V+G SK+S LFI++L +L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKENPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCSSMWQLLKKVRHFMETVSPF  333
            WL+ENPKF++++ P YSPW+N +E LW +LH+T+TRNHQC  MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

71) SSON_3131 in NC_007384


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  335 bits (1258),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 186/304 (62%), Positives = 247/304 (82%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDRVSDVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLR  93
            MLMLHRGD VS+ ARTLC ARSSVGRWINWFT  G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHSPGDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  ++ +TV R L  AGIVWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+AAI+ AL+     +PVFYEDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSCVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQS  273
            YL+G++++ TG+V  V+G SK+S LFI++L +L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKENPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCSSMWQLLKKVRHFMETVSPF  333
            WL+ENPKF++++ P YSPW+N +E LW +LH+T+TRNHQC  MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

72) SSON_3218 in NC_007384


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  335 bits (1258),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 186/304 (62%), Positives = 247/304 (82%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDRVSDVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLR  93
            MLMLHRGD VS+ ARTLC ARSSVGRWINWFT  G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHSPGDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  ++ +TV R L  AGIVWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+AAI+ AL+     +PVFYEDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSCVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQS  273
            YL+G++++ TG+V  V+G SK+S LFI++L +L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKENPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCSSMWQLLKKVRHFMETVSPF  333
            WL+ENPKF++++ P YSPW+N +E LW +LH+T+TRNHQC  MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

73) SSON_3249 in NC_007384


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  335 bits (1258),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 186/304 (62%), Positives = 247/304 (82%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDRVSDVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLR  93
            MLMLHRGD VS+ ARTLC ARSSVGRWINWFT  G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHSPGDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  ++ +TV R L  AGIVWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+AAI+ AL+     +PVFYEDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSCVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQS  273
            YL+G++++ TG+V  V+G SK+S LFI++L +L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKENPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCSSMWQLLKKVRHFMETVSPF  333
            WL+ENPKF++++ P YSPW+N +E LW +LH+T+TRNHQC  MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

74) SSON_4474 in NC_007384


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  335 bits (1258),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 186/304 (62%), Positives = 247/304 (82%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDRVSDVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLR  93
            MLMLHRGD VS+ ARTLC ARSSVGRWINWFT  G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHSPGDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  ++ +TV R L  AGIVWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+AAI+ AL+     +PVFYEDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSCVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQS  273
            YL+G++++ TG+V  V+G SK+S LFI++L +L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKENPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCSSMWQLLKKVRHFMETVSPF  333
            WL+ENPKF++++ P YSPW+N +E LW +LH+T+TRNHQC  MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

75) SSON_P056 in NC_007385


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  335 bits (1258),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 186/304 (62%), Positives = 247/304 (82%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDRVSDVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLR  93
            MLMLHRGD VS+ ARTLC ARSSVGRWINWFT  G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHSPGDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  ++ +TV R L  AGIVWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+AAI+ AL+     +PVFYEDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSCVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQS  273
            YL+G++++ TG+V  V+G SK+S LFI++L +L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKENPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCSSMWQLLKKVRHFMETVSPF  333
            WL+ENPKF++++ P YSPW+N +E LW +LH+T+TRNHQC  MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

76) SSON_0149 in NC_007384


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  334 bits (1253),  Expect = 4e-93, Method: Compositional matrix adjust.
 Identities = 185/304 (61%), Positives = 246/304 (81%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDRVSDVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLR  93
            MLMLHRGD VS+ ARTLC ARSSVGRWINWFT  G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHSPGDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  ++ +TV R L  AGIVWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+AAI+ AL+     +PVFYEDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGIGKVSCVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQS  273
            YL+G++++  G+V  V+G SK+S LFI++L +L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKENPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCSSMWQLLKKVRHFMETVSPF  333
            WL+ENPKF++++ P YSPW+N +E LW +LH+T+TRNHQC  MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

77) SSON_P183 in NC_007385


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  333 bits (1251),  Expect = 5e-93, Method: Compositional matrix adjust.
 Identities = 185/304 (61%), Positives = 246/304 (81%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDRVSDVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLR  93
            MLMLHRGD VS+ ARTLC ARSSVGRWINWFT  G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHSPGDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  ++ +TV R L  AGIVWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAAIHKALDECSAEHQVFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+AAI+ AL+     + VFYEDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSCVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQS  273
            YL+G++++ TG+V  V+G SK+S LFI++L +L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKENPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCSSMWQLLKKVRHFMETVSPF  333
            WL+ENPKF++++ P YSPW+N +E LW +LH+T+TRNHQC  MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

78) SSON53_18625 in NC_016822


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  332 bits (1245),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 185/304 (61%), Positives = 246/304 (81%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDRVSDVARTLCCACSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLR  93
            MLMLHRGD VS+ ARTLC A SSVGRWINWFT  G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHSPGDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  ++ +TV R L  AGIVWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+AAI+ AL+     +PVFYEDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSCVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQS  273
            YL+G++++ TG+V  V+G SK+S LFI++L +L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKENPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCSSMWQLLKKVRHFMETVSPF  333
            WL+ENPKF++++ P YSPW+N +E LW +LH+T+TRNHQC  MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

79) SSON_3185 in NC_007384


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  332 bits (1245),  Expect = 2e-92, Method: Compositional matrix adjust.
 Identities = 185/304 (61%), Positives = 246/304 (81%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDRVSDVARTLCCACSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLR  93
            MLMLHRGD VS+ ARTLC A SSVGRWINWFT  G EGL+SLP+ R+R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHSPGDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  ++ +TV R L  AGIVWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAAIHKALDECSAEHPVFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+AAI+ AL+     +PVFYEDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSCVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQS  273
            YL+G++++ TG+V  V+G SK+S LFI++L +L+ TYRRA TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKENPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCSSMWQLLKKVRHFMETVSPF  333
            WL+ENPKF++++ P YSPW+N +E LW +LH+T+TRNHQC  MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

80) SFxv_5093 in NC_017319


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  331 bits (1241),  Expect = 3e-92, Method: Compositional matrix adjust.
 Identities = 183/301 (61%), Positives = 244/301 (82%), Gaps = 0/301 (0%)

Query  12   LHRGDRVSDVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLRELV  71
            LHRGD VS+ ARTLC ARSSVGRWINWFT  G EGL+SLP+ R+R+WP E+I + L  L+
Sbjct  4    LHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLILLM  63

Query  72   KHSPGDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSVGIVWRRAAPTLRIRDPH  131
            +++P +FG  RSRWST LL+IKI+++ +  ++ +TV R L   GIVWRRAAPTL+++DPH
Sbjct  64   QQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFKDPH  123

Query  132  KDEKMAAIHKALDECSAEHPVFYEDEVDIHLHPKIGADWQLRGQQKRVVTPGQNEKYYLA  191
              EK+AAI+ AL+     +PVFYEDEVDI+L+PKIGADW ++GQQKR+ TPGQN+K YL+
Sbjct  124  YAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKHYLS  183

Query  192  GALHSGTGKVSYVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQSWLK  251
            G++++ TG+V YV+G SK+S LFI++L +L+ TYRRA TITLI+DNY+IHKSR  + WL+
Sbjct  184  GTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVEDWLQ  243

Query  252  ENPKFRGIYQPVYSPWVNHVERLWQALHDTITRNHQCRSMWQLLKKVRHFMETVSPFPGG  311
            ENPKF+ ++ P YSPW+N +E LW +LH+T+TRNHQCR MWQLL KV++FM   SPFPG+
Sbjct  244  ENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPFPGS  303

Query  312  K  312
            +
Sbjct  304  Q  304

81) CP0239 in NC_004851


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  331 bits (1241),  Expect = 3e-92, Method: Compositional matrix adjust.
 Identities = 183/301 (61%), Positives = 244/301 (82%), Gaps = 0/301 (0%)

Query  12   LHRGDRVSDVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLRELV  71
            LHRGD VS+ ARTLC ARSSVGRWINWFT  G EGL+SLP+ R+R+WP E+I + L  L+
Sbjct  4    LHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLILLM  63

Query  72   KHSPGDFGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSVGIVWRRAAPTLRIRDPH  131
            +++P +FG  RSRWST LL+IKI+++ +  ++ +TV R L   GIVWRRAAPTL+++DPH
Sbjct  64   QQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFKDPH  123

Query  132  KDEKMAAIHKALDECSAEHPVFYEDEVDIHLHPKIGADWQLRGQQKRVVTPGQNEKYYLA  191
              EK+AAI+ AL+     +PVFYEDEVDI+L+PKIGADW ++GQQKR+ TPGQN+K YL+
Sbjct  124  YAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKHYLS  183

Query  192  GALHSGTGKVSYVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQSWLK  251
            G++++ TG+V YV+G SK+S LFI++L +L+ TYRRA TITLI+DNY+IHKSR  + WL+
Sbjct  184  GTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVEDWLQ  243

Query  252  ENPKFRGIYQPVYSPWVNHVERLWQALHDTITRNHQCRSMWQLLKKVRHFMETVSPFPGG  311
            ENPKF+ ++ P YSPW+N +E LW +LH+T+TRNHQCR MWQLL KV++FM   SPFPG+
Sbjct  244  ENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPFPGS  303

Query  312  K  312
            +
Sbjct  304  Q  304

82) Sputcn32_0218 in NC_009438


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  330 bits (1239),  Expect = 5e-92, Method: Compositional matrix adjust.
 Identities = 186/304 (62%), Positives = 241/304 (80%), Gaps = 0/304 (0%)

Query  34   MLMLHRGERVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPSGRGRRWPFEHICALLR  93
            MLMLHRG+ VSH ARTLC ARSS+GRWINWFTL G+EGL+SLP+ R R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHSPGDFGYQRSRWSTELLAIKIRDVTGCPLHASTIRRWLPAAGLVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ + ++  ST+ R L  AG+VWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKEEKMVAIHEALAKCSAENPVFSEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+ AI+ AL K    NPVF EDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLR  273
            YL+G++++ TG+V YV+G SK S LFI +L  L+ TYRRA TITLI+DNY+IHKSR    
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKANQKFRVIYQPVYSPWVNHVERLWQALHETITRNHQCRSMWQLLKKVHHFMDTVSPF  333
            WL+ N KF++++ P YSPW+N +E LW +LHET+TRNHQCR MWQLL KV +FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

83) Sputw3181_0436 in NC_008750


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  330 bits (1239),  Expect = 5e-92, Method: Compositional matrix adjust.
 Identities = 186/304 (62%), Positives = 241/304 (80%), Gaps = 0/304 (0%)

Query  34   MLMLHRGERVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPSGRGRRWPFEHICALLR  93
            MLMLHRG+ VSH ARTLC ARSS+GRWINWFTL G+EGL+SLP+ R R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHSPGDFGYQRSRWSTELLAIKIRDVTGCPLHASTIRRWLPAAGLVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ + ++  ST+ R L  AG+VWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKEEKMVAIHEALAKCSAENPVFSEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+ AI+ AL K    NPVF EDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLR  273
            YL+G++++ TG+V YV+G SK S LFI +L  L+ TYRRA TITLI+DNY+IHKSR    
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKANQKFRVIYQPVYSPWVNHVERLWQALHETITRNHQCRSMWQLLKKVHHFMDTVSPF  333
            WL+ N KF++++ P YSPW+N +E LW +LHET+TRNHQCR MWQLL KV +FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

84) XNC1_4405 in NC_014228


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  329 bits (1235),  Expect = 9e-92, Method: Compositional matrix adjust.
 Identities = 183/304 (61%), Positives = 246/304 (81%), Gaps = 0/304 (0%)

Query  1    MLMLHDGDSISQVAKTLACSRSSVGRWVNWYTLYGIEGLQSLPSGRPRQWPVESICLLLR  60
            MLMLH GD++S+ A+TL  +RSSVGRW+NW+TL G EGLQSLP+ RPRQWPVE I   L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  61   QLISHSPEVFGYQRSRWSSELLAIQVHEITGYPLHASTIRRWLPQANIVWRRAAPTLRIH  120
             L+ ++P+ FG  RSRWS+ LL+I++ ++ + ++  ST+ R L QA IVWRRAAPTL++ 
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  121  DPHKEEKLRAINDALEKCNPDHPVFYEDEVDIHLNPKIGADWQLRGQQKRVITPGQNEKY  180
            DPH  EK+ AI+ ALEK +  +PVFYEDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  181  YLAGALHSGTGKVSYVGSNNKDSSLFIKLLAHLKATYRRAKSITLIVDNYIIHKSQKTQQ  240
            YL+G++++ TG+V YV++ +K+S LFI++L  L+ TYRRA +ITLI+DNY+IHKS+K ++
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  241  WLAQNSKFRLIYQPIYSPWINHIEKLWLALHETITRNHCCRYMWQLLRKVRGFMETVSPF  300
            WL +N+KF+L++ P YSPW+N IE LWL+LHET+TRNH CRYMWQLL KV+ FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  301  PGNK  304
            PG++
Sbjct  301  PGSQ  304

85) EcSMS35_3131 in NC_010498


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  321 bits (1203),  Expect = 4e-89, Method: Compositional matrix adjust.
 Identities = 181/304 (60%), Positives = 242/304 (80%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDRVSDVARTLCCARSSVGCWINWFTQSGVEGLKSLPAGRARLWSFEHICTLLR  93
            MLMLHRGD VS+ ARTLC ARSSVG WINWFT  G EGL+SLP+ R+R W+ E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHSPGDFGYQRSRWSTELLAIKINEITDCQLNAGTVRRWLPSAGIVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++    ++ +TV R L  AGIVWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKDEKMAAIHKALDECSTEHPVFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKY  213
            DPH  EK+AAI+ AL+     +PVFYEDEVDI+LNPKIGADW ++GQQKR+ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  DLAGALHSGTGKVSYVGGNSKSSALFISLLKRLKATYLRVKTITLIVDNYIIHKSRETQR  273
             L+G++++ TG+V YV+G SK+S LFI++L +L+ TY R  TITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKENPKFRVIYQPVYLPWVNHVERLWQALHDTITRNHQCRSMWQLLKKIRHFMETISPF  333
            WL+ENPKF++++ P Y PW+N +E LW +LH+T+TRNHQCR MWQLL K+++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGK  337
            PG++
Sbjct  301  PGSQ  304

86) XBJ1_1116 in NC_013892


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  319 bits (1197),  Expect = 1e-88, Method: Compositional matrix adjust.
 Identities = 192/308 (63%), Positives = 240/308 (78%), Gaps = 3/308 (0%)

Query  20   LLMLHEGKTVSAISRTLHCSRSSVNRWINWFTLYGLEGLKSLPSGRPAIWNLAPlfslls  79
            +LMLH G TVS  +RTL  +RSSV RWINWFTL G EGL+SLP+ RP  W +  ++S L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  80   fllQHSPQDFGCLRSRWSIELITRIINELFGLSLSQSTFYRYFCQVGIVWRRAAPTVKKP  139
            +L+Q++PQ+FG LRSRWS  L++  I++LF++S+S ST YR +CQ GIVWRRAAPT+K  
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  140  DPEYDEKMAKITEALSSVSEQHPVFYEDEVDIDLNPKIGADWCLKGQQKRVMTPGKNQKH  199
            DP+Y EK+A I  AL      +PVFYEDEVDIDLNPKIGADWC+KGQQKR+ TPG+NQKH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  200  YFAGCLDAQTGQVTYVSGIKKNSDLFINMLKELNGQYRHAKNITLILDNYGIHKSRKVRA  259
            Y++G ++A TG+V YVSG  KNS LFINML  L   YR+A  ITLILDNY IHKSRKV  
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  260  WLQQNPKFNLLFLPVYSPWINKIERLWQSLHETVTRDHCCQYMWQLLKCVEAFI---NAF  316
            WLQ+NPKF+LLFLP YSPW+NKIE LW SLHET+TR+H C+YMWQLL  V  F+   ++F
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  317  SSGQQPGM  324
            +++Q  ++
Sbjct  301  PGSQAVAV  308

87) XNC1_0600 in NC_014228


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  319 bits (1196),  Expect = 1e-88, Method: Compositional matrix adjust.
 Identities = 193/308 (63%), Positives = 240/308 (78%), Gaps = 3/308 (0%)

Query  34   LLMLHEGKTVSALSRTLHCSRSSVNRWINWFTLYGLEGLKSLPSGRPAIWNLAPlfslls  93
            +LMLH G TVS  +RTL  +RSSV RWINWFTL G EGL+SLP+ RP  W +  ++S L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   fllQHSPQDFGCLRSRWSIELITRIINELFGLSLSQSTFYRYFCQVGIVWRRAAPTVKKP  153
            +L+Q++PQ+FG LRSRWS  L++  I++LF++S+S ST YR +CQ GIVWRRAAPT+K  
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPEYDEKMAKITEALSSVSEQHPVFYEDEVDIDLNPKIGADWCLKGQQKRVMTPGKNQKH  213
            DP+Y EK+A I  AL      +PVFYEDEVDIDLNPKIGADWC+KGQQKR+ TPG+NQKH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGCLDAQTGQVTYVSGIKKNSDLFINLLKELNGQYRHAKNITLILDNYGIHKSRKVRA  273
            YL+G ++A TG+V YVSG  KNS LFIN+L  L   YR+A  ITLILDNY IHKSRKV  
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLQQNPKFNLLFLPVYSPWINKIERLWQSLHETVTRNHCCQYMWQLLKCVEAFI---NSF  330
            WLQ+NPKF+LLFLP YSPW+NKIE LW SLHET+TRNH C+YMWQLL  V  F+   ++F
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  331  SSGQQPGM  338
            +++Q  ++
Sbjct  301  PGSQAVAV  308

88) XNC1_3007 in NC_014228


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  318 bits (1192),  Expect = 2e-88, Method: Compositional matrix adjust.
 Identities = 184/304 (61%), Positives = 243/304 (80%), Gaps = 0/304 (0%)

Query  20   MLMLYRGDTVSYVAKTLACSRSSVGRWINRYTLYGLEGLKSRPPGRPRRWPFELICSLLR  79
            MLML RGDTVS  A+TL  +RSSVGRWIN++TL G EGL+S PP RPR+WP E I S L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  80   HLISDSPDVLGYQRSRWSSELLAIQINEITGCSLHASTIRRWLPQANIVWRRAVPTLRIR  139
             L+ ++P+ +G  RSRWS+ LL+I+I+++ + S+  ST+ R L QA IVWRRA PTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  140  DPHKEEKMRAINDALERCSPDHPVFYEDEVDIHLNPKIGADWQLRGQQKRITTPGQNEKY  199
            DPH  EK+ AI+ ALE+    +PVFYEDEVDI+LNPKIGADW ++GQQKRI+TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  200  YLAGALHSGTGKGSYVGGNNKDSSLFIKLLAHLKAAYRRAKSITLIVDNYIIHKSQKTQE  259
            YL+G++++ TG+  YV+G +K+S LFI++L  L+ +YRRA +ITLI+DNY+IHKS+K ++
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  260  WLAENPKFKLIYQPIYSPWINHIEKLWLALHETITRNHCCCYMWQLLRKVRSFMNTVSPF  319
            WL ENPKFKL++ P YSPW+N IE LWL+LHET+TRNH C YMWQLL KV+ FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  320  PGNK  323
            PG++
Sbjct  301  PGSQ  304

89) XNC1_4234 in NC_014228


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  317 bits (1188),  Expect = 6e-88, Method: Compositional matrix adjust.
 Identities = 191/308 (63%), Positives = 237/308 (77%), Gaps = 3/308 (0%)

Query  34   LLMLHEGKTVSALSRTLHCSRSSVNRWINWFTLYGLEGLKSLPSGRPATWNLAPlfslls  93
            +LMLH G TVS  +RTL  +RSSV RWINWFTL G EGL+SLP+ RP  W +  ++S L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   fllQHSPQDFGCLRSRWSIELITRIIHELFGLSLSKSTFYRYFCQVGIVWRRAAPTVKKP  153
            +L+Q++PQ+FG LRSRWS  L++  I +LF++S+S ST YR +CQ GIVWRRAAPT+K  
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPEYDEKMAKITEALSSVSEQHPVFYEDEVDIDLNPKIGADWCLKGQQKRVMTPGKNQKH  213
            DP+Y EK+A I  AL      +PVFYEDEVDIDLNPKIGADWC+KGQQKR+ TPG+NQKH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGCLDAQTGRVTYVSGIKKNSDLFINLLKELNGQYRHVKNITLILDNYGIHKSRKVGA  273
            YL+G ++A TGRV YVSG  KNS LFIN+L  L   YR+   ITLILDNY IHKSRKV  
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WRKQNPKFNLLFLPVYSPWINKIERLWQSLHETVTRNHCCQYMWQLLKCVEAFI---NAF  330
            W ++NPKF+LLFLP YSPW+NKIE LW SLHET+TRNH C+YMWQLL  V  F+   ++F
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  331  SSGQQPGM  338
            +++Q  ++
Sbjct  301  PGSQAVAV  308

90) Ser39006_1451 in NC_022268


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  315 bits (1181),  Expect = 2e-87, Method: Compositional matrix adjust.
 Identities = 185/304 (61%), Positives = 240/304 (79%), Gaps = 4/304 (1%)

Query  34   MLMLHRGDTVSHVARTLCCARSSLGRWINWFTLYGLEGLKSLPSGRGRCWPFEHICTLLR  93
            MLMLHRGDTVSH ARTLC ARSS+GRWINWFTL G EGL+SLP+ R R WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   QLIKHSPSDFGYQRSRWSTELLAIKINEITGCRLHASTVRRWLPSAGIVWRRAAPTLRIR  153
             L++++P +FG  RSRWST LL+IKI+++ +  +  STV R L  AGIVWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHKEEKMAAIAEALSECSVEHPVFYEDEVDIHLNPKIGADWQLRGQQKRVATPGKNEKY  213
            DPH  EK+AAI  AL    V +PVFYEDEVDI+LNPKIGADW ++GQQKR+ATPG+N+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHSGTGKVSYVGSSNKNSGLFISLLKHLKSTYRRAKTITLVVDNYIIHKSRETLR  273
            YL+G++++ TG+V YV++++KNS LFI++L  L+ TYRRA TITL++DNY+IHKSR    
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKKNPKFIVIYQPVYSPWVNHVERLWQALHDTITRNHSC----QLLNKVRHFMKTVSPF  329
            WL+ NPKF +++ P YSPW+N +E LW +LH+T+TRNH C    QLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  330  PGRK  333
            PG +
Sbjct  301  PGSQ  304

91) XNC1_2002 in NC_014228


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  314 bits (1178),  Expect = 3e-87, Method: Compositional matrix adjust.
 Identities = 183/304 (61%), Positives = 242/304 (80%), Gaps = 0/304 (0%)

Query  20   MLMLYRGDTVSYVAKTLACSRSSVGRWINRYTLYGLEGLKSRPPGRPRRWPFELICSLLR  79
            MLML RGDTVS  A+TL  +RSSVGRWIN++TL G EGL+S PP RPR+WP E I S L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  80   HLISDSPDVLGYQRSRWSSERLAIQINEITGCSLHASTIRRWLPQANIVWRRAVPTLRIR  139
             L+ ++P+ +G  RSRWS+  L+I+I+++ + S+  ST+ R L QA IVWRRA PTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  140  DPHKEEKMRAINDALERCSPDHPVFYEDEVDIHLNPKIGADWQLRGQQKRITTPGQNEKY  199
            DPH  EK+ AI+ ALE+    +PVFYEDEVDI+LNPKIGADW ++GQQKRI+TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  200  YLAGALHSGTGKVSYVGGNNKDSSLFIKLLAHLKAAYRRAKSITLIADNYIIHKSQKTQE  259
            YL+G++++ TG+V YV+G +K+S LFI++L  L+ +YRRA +ITLI DNY+IHKS+K ++
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  260  WLAENPKFKFIYQPIYSPWINHIEKLWLALHETITRNHCCCYMWQLLRKVRGFMNTVSPF  319
            WL ENPKFK+++ P YSPW+N IE LWL+LHET+TRNH C YMWQLL KV+ FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  320  PGNK  323
            PG++
Sbjct  301  PGSQ  304

92) NT01EI_2537 in NC_012779


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  314 bits (1177),  Expect = 4e-87, Method: Compositional matrix adjust.
 Identities = 180/304 (60%), Positives = 241/304 (80%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDTVSHVARTLCCARSSIGRWINGLTLSGAEGLKSLPSGRGKRWPFEHICALLR  93
            MLMLHRGDTVSH ARTLC ARSS+GRWIN +TL G+EGL+SLP+ R ++WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHSPGDFCYQRSRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIR  153
             L++++P +F   RSRWST LL+IKI+++ + ++  ST+ R L  AG+VWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  EPNKEEKMAAINVALASCTTRHSVFYEDEVDIHLNPKIGAEWQLRGQQKRIVTPGQNEKY  213
            +P+  EK+AAI+ AL      ++VFYEDEVDI+LNPKIGA+W ++GQQKRI TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  SLAGVLHSGTGKVSYVGGNSKDSSLFIKLLKDLKATCRRAKTITLIVDNYIIHKSRETLR  273
             L+G +++ TG+V YV+G SK+S LFI++L  L+ T RRA TITLI+DNY+IHKSR    
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKANPTFKVIYQPIYSPWVNHIEQLWQALHETITRNHQCHSMWQLLKKVRHFMDTVSPF  333
            WL+ NP FK+++ P YSPW+N IE LW +LHET+TRNHQC+ MWQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGGE  337
            PG++
Sbjct  301  PGSQ  304

93) NT01EI_2975 in NC_012779


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  311 bits (1165),  Expect = 4e-86, Method: Compositional matrix adjust.
 Identities = 183/304 (61%), Positives = 238/304 (79%), Gaps = 0/304 (0%)

Query  34   MLMLHRGDTVSHVVRTLCCARSSIGRWINGFTLSGAEGLKSLPSGRGRRWPFEHICALLR  93
            MLMLHRGDTVSH  RTLC ARSS+GRWIN FTL G+EGL+SLP+ R R+WP E+I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   ELVKHFPGDFGYQRSRWSTELLAIKIRDITGCPLHASTIRRWLPAAGLVWRRAAPTLRIR  153
             L+++ P +FG  RSRWST LL+IKI+++ + ++  ST+ R L  AG+VWRRAAPTL+++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPNKEEKMAAINVALASCTTGHSVFYEDEVDIHLNPKIGADWQLRGQQKRIVTPGQNEKY  213
            DP+  EK+AAI+ AL     +++VFYEDEVDI+LNPKIGADW ++GQQKRI TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  SLVGALHSGTGKVSYVGGNSKYSSLFIKPLKHLKATYRRAKTITLIVDNDIIHKSRETLR  273
             L G++++ TG+V YV+G SK S LFI+ L  L+ TYRRA TITLI+DN +IHKSR    
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLQANPTFKVIYQPIYSPWVNHIEQLWQALHEKITRNHQCRSIWQLLKKVRHFMDTVSPF  333
            WLQ NP FK+++ P YSPW+N IE LW +LHE +TRNHQCR +WQLL KV++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PAGK  337
            P+++
Sbjct  301  PGSQ  304

94) ASA_1023 in NC_009348


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  306 bits (1145),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 176/303 (59%), Positives = 234/303 (78%), Gaps = 0/303 (0%)

Query  34   ILLLHEGRTVTDVHHLTGAARSTIGRWLRWYRDEGIDALEALPAGRAPVLPIAKMVTLLV  93
            +L+LH G TV++  +   AARS++GRW+ W+   G ++L++LP+ R+   P+ ++++ L+
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLMQFSPQDFGYQRSRWCTELLAIKINRLTGLNVAASTLRRWLPRMGIVWRRPVPTLRIK  153
            LLMQ +PQ+FG  RSRW T LL+IKI+ L +++++ ST+ R L + GIVWRR+ PTL++K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPAYQEKMANIDAALARCNADNPVFYEDEVDIDLNPKLGADWMFRAQQKRVVTPGQNAKH  213
            DP Y EK+A I++AL + +  NPVFYEDEVDIDLNPK+GADW  ++QQKR+ TPGQN KH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGVLHAGNGRVLYVSGIKKNSSLFIAMLEKLRHDYRRAKTITLILDNYIIHKSKQTER  273
            YL+G ++A  GRV YVSG  KNS LFI MLEKLR+ YRRA TITLILDNY+IHKS++ E 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKKNPKFCLVFQPVYSPWVNHIERLWHKLHETITRNHQCRGMANLLARVKYFMDTVSPF  333
            WL+ NPKF L+F P YSPW+N IE LW  LHET+TRNHQCR M +LL +VK FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGN  336
            PG+
Sbjct  301  PGS  303

95) ASA_1182 in NC_009348


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  306 bits (1145),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 176/303 (59%), Positives = 234/303 (78%), Gaps = 0/303 (0%)

Query  34   ILLLHEGRTVTDVHHLTGAARSTIGRWLRWYRDEGIDALEALPAGRAPVLPIAKMVTLLV  93
            +L+LH G TV++  +   AARS++GRW+ W+   G ++L++LP+ R+   P+ ++++ L+
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLMQFSPQDFGYQRSRWCTELLAIKINRLTGLNVAASTLRRWLPRMGIVWRRPVPTLRIK  153
            LLMQ +PQ+FG  RSRW T LL+IKI+ L +++++ ST+ R L + GIVWRR+ PTL++K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPAYQEKMANIDAALARCNADNPVFYEDEVDIDLNPKLGADWMFRAQQKRVVTPGQNAKH  213
            DP Y EK+A I++AL + +  NPVFYEDEVDIDLNPK+GADW  ++QQKR+ TPGQN KH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGVLHAGNGRVLYVSGIKKNSSLFIAMLEKLRHDYRRAKTITLILDNYIIHKSKQTER  273
            YL+G ++A  GRV YVSG  KNS LFI MLEKLR+ YRRA TITLILDNY+IHKS++ E 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKKNPKFCLVFQPVYSPWVNHIERLWHKLHETITRNHQCRGMANLLARVKYFMDTVSPF  333
            WL+ NPKF L+F P YSPW+N IE LW  LHET+TRNHQCR M +LL +VK FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGN  336
            PG+
Sbjct  301  PGS  303

96) ASA_1304 in NC_009348


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  306 bits (1147),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 176/303 (59%), Positives = 234/303 (78%), Gaps = 0/303 (0%)

Query  34   ILLLHEGRTVTDVHHLTGAARSTIGRWLRWYRDEGIDALEALPAGRAPVLPIAKMVTLLV  93
            +L+LH G TV++  +   AARS++GRW+ W+   G ++L++LP+ R+   P+ ++++ L+
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLMQFSPQDFGYQRSRWCTELLAIKINRLTGLNVAASTLRRWLPRMGIVWRRPVPTLRIK  153
            LLMQ +PQ+FG  RSRW T LL+IKI+ L +++++ ST+ R L + GIVWRR+ PTL++K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPAYQEKIANIDAALARCNADNPVFYEDEVDIDLNPKLGADWMFRAQQKRVVTPGQNAKH  213
            DP Y EK+A I++AL + +  NPVFYEDEVDIDLNPK+GADW  ++QQKR+ TPGQN KH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGVLHAGNGRVLYVSGIKKNSSLFIAMLEKLRHHYRRAKTITLILDNYIIHKSKQTER  273
            YL+G ++A  GRV YVSG  KNS LFI MLEKLR+ YRRA TITLILDNY+IHKS++ E 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKKNPKFCLVFQPVYSPWVNHIERLWHKLHETITRNHQCRGMANLLARVKYFMDTVSPF  333
            WL+ NPKF L+F P YSPW+N IE LW  LHET+TRNHQCR M +LL +VK FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGN  336
            PG+
Sbjct  301  PGS  303

97) ASA_1386 in NC_009348


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  306 bits (1145),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 176/303 (59%), Positives = 234/303 (78%), Gaps = 0/303 (0%)

Query  34   ILLLHEGRTVTDVHHLTGAARSTIGRWLRWYRDEGIDALEALPAGRAPVLPIAKMVTLLV  93
            +L+LH G TV++  +   AARS++GRW+ W+   G ++L++LP+ R+   P+ ++++ L+
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLMQFSPQDFGYQRSRWCTELLAIKINRLTGLNVAASTLRRWLPRMGIVWRRPVPTLRIK  153
            LLMQ +PQ+FG  RSRW T LL+IKI+ L +++++ ST+ R L + GIVWRR+ PTL++K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPAYQEKMANIDAALARCNADNPVFYEDEVDIDLNPKLGADWMFRAQQKRVVTPGQNAKH  213
            DP Y EK+A I++AL + +  NPVFYEDEVDIDLNPK+GADW  ++QQKR+ TPGQN KH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGVLHAGNGRVLYVSGIKKNSSLFIAMLEKLRHDYRRAKTITLILDNYIIHKSKQTER  273
            YL+G ++A  GRV YVSG  KNS LFI MLEKLR+ YRRA TITLILDNY+IHKS++ E 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKKNPKFCLVFQPVYSPWVNHIERLWHKLHETITRNHQCRGMANLLARVKYFMDTVSPF  333
            WL+ NPKF L+F P YSPW+N IE LW  LHET+TRNHQCR M +LL +VK FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGN  336
            PG+
Sbjct  301  PGS  303

98) ASA_1400 in NC_009348


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  306 bits (1145),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 176/303 (59%), Positives = 234/303 (78%), Gaps = 0/303 (0%)

Query  34   ILLLHEGRTVTDVHHLTGAARSTIGRWLRWYRDEGIDALEALPAGRAPVLPIAKMVTLLV  93
            +L+LH G TV++  +   AARS++GRW+ W+   G ++L++LP+ R+   P+ ++++ L+
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLMQFSPQDFGYQRSRWCTELLAIKINRLTGLNVAASTLRRWLPRMGIVWRRPVPTLRIK  153
            LLMQ +PQ+FG  RSRW T LL+IKI+ L +++++ ST+ R L + GIVWRR+ PTL++K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPAYQEKMANIDAALARCNADNPVFYEDEVDIDLNPKLGADWMFRAQQKRVVTPGQNAKH  213
            DP Y EK+A I++AL + +  NPVFYEDEVDIDLNPK+GADW  ++QQKR+ TPGQN KH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGVLHAGNGRVLYVSGIKKNSSLFIAMLEKLRHDYRRAKTITLILDNYIIHKSKQTER  273
            YL+G ++A  GRV YVSG  KNS LFI MLEKLR+ YRRA TITLILDNY+IHKS++ E 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKKNPKFCLVFQPVYSPWVNHIERLWHKLHETITRNHQCRGMANLLARVKYFMDTVSPF  333
            WL+ NPKF L+F P YSPW+N IE LW  LHET+TRNHQCR M +LL +VK FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGN  336
            PG+
Sbjct  301  PGS  303

99) ASA_1616 in NC_009348


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  306 bits (1145),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 176/303 (59%), Positives = 234/303 (78%), Gaps = 0/303 (0%)

Query  34   ILLLHEGRTVTDVHHLTGAARSTIGRWLRWYRDEGIDALEALPAGRAPVLPIAKMVTLLV  93
            +L+LH G TV++  +   AARS++GRW+ W+   G ++L++LP+ R+   P+ ++++ L+
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLMQFSPQDFGYQRSRWCTELLAIKINRLTGLNVAASTLRRWLPRMGIVWRRPVPTLRIK  153
            LLMQ +PQ+FG  RSRW T LL+IKI+ L +++++ ST+ R L + GIVWRR+ PTL++K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPAYQEKMANIDAALARCNADNPVFYEDEVDIDLNPKLGADWMFRAQQKRVVTPGQNAKH  213
            DP Y EK+A I++AL + +  NPVFYEDEVDIDLNPK+GADW  ++QQKR+ TPGQN KH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGVLHAGNGRVLYVSGIKKNSSLFIAMLEKLRHDYRRAKTITLILDNYIIHKSKQTER  273
            YL+G ++A  GRV YVSG  KNS LFI MLEKLR+ YRRA TITLILDNY+IHKS++ E 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKKNPKFCLVFQPVYSPWVNHIERLWHKLHETITRNHQCRGMANLLARVKYFMDTVSPF  333
            WL+ NPKF L+F P YSPW+N IE LW  LHET+TRNHQCR M +LL +VK FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGN  336
            PG+
Sbjct  301  PGS  303

100) ASA_1758 in NC_009348


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  306 bits (1145),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 176/303 (59%), Positives = 234/303 (78%), Gaps = 0/303 (0%)

Query  34   ILLLHEGRTVTDVHHLTGAARSTIGRWLRWYRDEGIDALEALPAGRAPVLPIAKMVTLLV  93
            +L+LH G TV++  +   AARS++GRW+ W+   G ++L++LP+ R+   P+ ++++ L+
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLMQFSPQDFGYQRSRWCTELLAIKINRLTGLNVAASTLRRWLPRMGIVWRRPVPTLRIK  153
            LLMQ +PQ+FG  RSRW T LL+IKI+ L +++++ ST+ R L + GIVWRR+ PTL++K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPAYQEKMANIDAALARCNADNPVFYEDEVDIDLNPKLGADWMFRAQQKRVVTPGQNAKH  213
            DP Y EK+A I++AL + +  NPVFYEDEVDIDLNPK+GADW  ++QQKR+ TPGQN KH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGVLHAGNGRVLYVSGIKKNSSLFIAMLEKLRHDYRRAKTITLILDNYIIHKSKQTER  273
            YL+G ++A  GRV YVSG  KNS LFI MLEKLR+ YRRA TITLILDNY+IHKS++ E 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKKNPKFCLVFQPVYSPWVNHIERLWHKLHETITRNHQCRGMANLLARVKYFMDTVSPF  333
            WL+ NPKF L+F P YSPW+N IE LW  LHET+TRNHQCR M +LL +VK FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGN  336
            PG+
Sbjct  301  PGS  303

101) ASA_2141 in NC_009348


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  306 bits (1145),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 176/303 (59%), Positives = 234/303 (78%), Gaps = 0/303 (0%)

Query  34   ILLLHEGRTVTDVHHLTGAARSTIGRWLRWYRDEGIDALEALPAGRAPVLPIAKMVTLLV  93
            +L+LH G TV++  +   AARS++GRW+ W+   G ++L++LP+ R+   P+ ++++ L+
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLMQFSPQDFGYQRSRWCTELLAIKINRLTGLNVAASTLRRWLPRMGIVWRRPVPTLRIK  153
            LLMQ +PQ+FG  RSRW T LL+IKI+ L +++++ ST+ R L + GIVWRR+ PTL++K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPAYQEKMANIDAALARCNADNPVFYEDEVDIDLNPKLGADWMFRAQQKRVVTPGQNAKH  213
            DP Y EK+A I++AL + +  NPVFYEDEVDIDLNPK+GADW  ++QQKR+ TPGQN KH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGVLHAGNGRVLYVSGIKKNSSLFIAMLEKLRHDYRRAKTITLILDNYIIHKSKQTER  273
            YL+G ++A  GRV YVSG  KNS LFI MLEKLR+ YRRA TITLILDNY+IHKS++ E 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKKNPKFCLVFQPVYSPWVNHIERLWHKLHETITRNHQCRGMANLLARVKYFMDTVSPF  333
            WL+ NPKF L+F P YSPW+N IE LW  LHET+TRNHQCR M +LL +VK FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGN  336
            PG+
Sbjct  301  PGS  303

102) ASA_2512 in NC_009348


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  306 bits (1145),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 176/303 (59%), Positives = 234/303 (78%), Gaps = 0/303 (0%)

Query  34   ILLLHEGRTVTDVHHLTGAARSTIGRWLRWYRDEGIDALEALPAGRAPVLPIAKMVTLLV  93
            +L+LH G TV++  +   AARS++GRW+ W+   G ++L++LP+ R+   P+ ++++ L+
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLMQFSPQDFGYQRSRWCTELLAIKINRLTGLNVAASTLRRWLPRMGIVWRRPVPTLRIK  153
            LLMQ +PQ+FG  RSRW T LL+IKI+ L +++++ ST+ R L + GIVWRR+ PTL++K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPAYQEKMANIDAALARCNADNPVFYEDEVDIDLNPKLGADWMFRAQQKRVVTPGQNAKH  213
            DP Y EK+A I++AL + +  NPVFYEDEVDIDLNPK+GADW  ++QQKR+ TPGQN KH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGVLHAGNGRVLYVSGIKKNSSLFIAMLEKLRHDYRRAKTITLILDNYIIHKSKQTER  273
            YL+G ++A  GRV YVSG  KNS LFI MLEKLR+ YRRA TITLILDNY+IHKS++ E 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKKNPKFCLVFQPVYSPWVNHIERLWHKLHETITRNHQCRGMANLLARVKYFMDTVSPF  333
            WL+ NPKF L+F P YSPW+N IE LW  LHET+TRNHQCR M +LL +VK FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGN  336
            PG+
Sbjct  301  PGS  303

103) ASA_2852 in NC_009348


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  306 bits (1147),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 176/303 (59%), Positives = 234/303 (78%), Gaps = 0/303 (0%)

Query  34   ILLLHEGRTVTDVHHLTGAARSTIGRWLRWYRDEGIDALEALPAGRAPVLPIAKMVTLLV  93
            +L+LH G TV++  +   AARS++GRW+ W+   G ++L++LP+ R+   P+ ++++ L+
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLMQFSPQDFGYQRSRWCTELLAIKINRLTGLNVAASTLRRWLPRMGIVWRRPVPTLRIK  153
            LLMQ +PQ+FG  RSRW T LL+IKI+ L +++++ ST+ R L + GIVWRR+ PTL++K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPAYQEKIANIDAALARCNADNPVFYEDEVDIDLNPKLGADWMFRAQQKRVVTPGQNAKH  213
            DP Y EK+A I++AL + +  NPVFYEDEVDIDLNPK+GADW  ++QQKR+ TPGQN KH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGVLHAGNGRVLYVSGIKKNSSLFIAMLEKLRHHYRRAKTITLILDNYIIHKSKQTER  273
            YL+G ++A  GRV YVSG  KNS LFI MLEKLR+ YRRA TITLILDNY+IHKS++ E 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKKNPKFCLVFQPVYSPWVNHIERLWHKLHETITRNHQCRGMANLLARVKYFMDTVSPF  333
            WL+ NPKF L+F P YSPW+N IE LW  LHET+TRNHQCR M +LL +VK FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGN  336
            PG+
Sbjct  301  PGS  303

104) ASA_3458 in NC_009348


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  306 bits (1145),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 176/303 (59%), Positives = 234/303 (78%), Gaps = 0/303 (0%)

Query  34   ILLLHEGRTVTDVHHLTGAARSTIGRWLRWYRDEGIDALEALPAGRAPVLPIAKMVTLLV  93
            +L+LH G TV++  +   AARS++GRW+ W+   G ++L++LP+ R+   P+ ++++ L+
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLMQFSPQDFGYQRSRWCTELLAIKINRLTGLNVAASTLRRWLPRMGIVWRRPVPTLRIK  153
            LLMQ +PQ+FG  RSRW T LL+IKI+ L +++++ ST+ R L + GIVWRR+ PTL++K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPAYQEKMANIDAALARCNADNPVFYEDEVDIDLNPKLGADWMFRAQQKRVVTPGQNAKH  213
            DP Y EK+A I++AL + +  NPVFYEDEVDIDLNPK+GADW  ++QQKR+ TPGQN KH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGVLHAGNGRVLYVSGIKKNSSLFIAMLEKLRHDYRRAKTITLILDNYIIHKSKQTER  273
            YL+G ++A  GRV YVSG  KNS LFI MLEKLR+ YRRA TITLILDNY+IHKS++ E 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKKNPKFCLVFQPVYSPWVNHIERLWHKLHETITRNHQCRGMANLLARVKYFMDTVSPF  333
            WL+ NPKF L+F P YSPW+N IE LW  LHET+TRNHQCR M +LL +VK FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGN  336
            PG+
Sbjct  301  PGS  303

105) ASA_3518 in NC_009348


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  306 bits (1145),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 176/303 (59%), Positives = 234/303 (78%), Gaps = 0/303 (0%)

Query  34   ILLLHEGRTVTDVHHLTGAARSTIGRWLRWYRDEGIDALEALPAGRAPVLPIAKMVTLLV  93
            +L+LH G TV++  +   AARS++GRW+ W+   G ++L++LP+ R+   P+ ++++ L+
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLMQFSPQDFGYQRSRWCTELLAIKINRLTGLNVAASTLRRWLPRMGIVWRRPVPTLRIK  153
            LLMQ +PQ+FG  RSRW T LL+IKI+ L +++++ ST+ R L + GIVWRR+ PTL++K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPAYQEKMANIDAALARCNADNPVFYEDEVDIDLNPKLGADWMFRAQQKRVVTPGQNAKH  213
            DP Y EK+A I++AL + +  NPVFYEDEVDIDLNPK+GADW  ++QQKR+ TPGQN KH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGVLHAGNGRVLYVSGIKKNSSLFIAMLEKLRHDYRRAKTITLILDNYIIHKSKQTER  273
            YL+G ++A  GRV YVSG  KNS LFI MLEKLR+ YRRA TITLILDNY+IHKS++ E 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKKNPKFCLVFQPVYSPWVNHIERLWHKLHETITRNHQCRGMANLLARVKYFMDTVSPF  333
            WL+ NPKF L+F P YSPW+N IE LW  LHET+TRNHQCR M +LL +VK FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGN  336
            PG+
Sbjct  301  PGS  303

106) ASA_0160 in NC_009348


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  305 bits (1144),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 176/303 (59%), Positives = 234/303 (78%), Gaps = 0/303 (0%)

Query  34   ILLLHEGRTVTDVHHLTGAARSTIGRWLRWYRDEGIDALEALPAGRAPVLPIAKMVTLLV  93
            +L+LH G TV++  +   AARS++GRW+ W+   G ++L++LP+ R+   P+ ++++ L+
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLMQFSPQDFGYQRSRWCTELLAIKINRLTGLNVAASTLRRWLPRMGIVWRRPVPTLRIK  153
            LLMQ +PQ+FG  RSRW T LL+IKI+ L +++++ ST+ R L + GIVWRR+ PTL++K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPAYQEKMANIDAALARCNADNPVFYEDEVDIDLNPKLGADWMFRAQQKRVVTPGQNAKH  213
            DP Y EK+A I++AL + +  NPVFYEDEVDIDLNPK+GADW  ++QQKR+ TPGQN KH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGVLHAGNGRVLYVSGIKKNSSLFIAMLEKLRHHYRRAKTITLILDNYIIHKSKQTER  273
            YL+G ++A  GRV YVSG  KNS LFI MLEKLR+ YRRA TITLILDNY+IHKS++ E 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKKNPKFCLVFQPVYSPWVNHIERLWHKLHETITRNHQCRGMANLLARVKYFMDTVSPF  333
            WL+ NPKF L+F P YSPW+N IE LW  LHET+TRNHQCR M +LL +VK FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGN  336
            PG+
Sbjct  301  PGS  303

107) ASA_0524 in NC_009348


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  305 bits (1144),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 176/303 (59%), Positives = 234/303 (78%), Gaps = 0/303 (0%)

Query  34   ILLLHEGRTVTDVHHLTGAARSTIGRWLRWYRDEGIDALEALPAGRAPVLPIAKMVTLLV  93
            +L+LH G TV++  +   AARS++GRW+ W+   G ++L++LP+ R+   P+ ++++ L+
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLMQFSPQDFGYQRSRWCTELLAIKINRLTGLNVAASTLRRWLPRMGIVWRRPVPTLRIK  153
            LLMQ +PQ+FG  RSRW T LL+IKI+ L +++++ ST+ R L + GIVWRR+ PTL++K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPAYQEKMANIDAALARCNADNPVFYEDEVDIDLNPKLGADWMFRAQQKRVVTPGQNAKH  213
            DP Y EK+A I++AL + +  NPVFYEDEVDIDLNPK+GADW  ++QQKR+ TPGQN KH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGVLHAGNGRVLYVSGIKKNSSLFIAMLEKLRHHYRRAKTITLILDNYIIHKSKQTER  273
            YL+G ++A  GRV YVSG  KNS LFI MLEKLR+ YRRA TITLILDNY+IHKS++ E 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKKNPKFCLVFQPVYSPWVNHIERLWHKLHETITRNHQCRGMANLLARVKYFMDTVSPF  333
            WL+ NPKF L+F P YSPW+N IE LW  LHET+TRNHQCR M +LL +VK FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGN  336
            PG+
Sbjct  301  PGS  303

108) ASA_1109 in NC_009348


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  305 bits (1144),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 176/303 (59%), Positives = 234/303 (78%), Gaps = 0/303 (0%)

Query  34   ILLLHEGRTVTDVHHLTGAARSTIGRWLRWYRDEGIDALEALPAGRAPVLPIAKMVTLLV  93
            +L+LH G TV++  +   AARS++GRW+ W+   G ++L++LP+ R+   P+ ++++ L+
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLMQFSPQDFGYQRSRWCTELLAIKINRLTGLNVAASTLRRWLPRMGIVWRRPVPTLRIK  153
            LLMQ +PQ+FG  RSRW T LL+IKI+ L +++++ ST+ R L + GIVWRR+ PTL++K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPAYQEKMANIDAALARCNADNPVFYEDEVDIDLNPKLGADWMFRAQQKRVVTPGQNAKH  213
            DP Y EK+A I++AL + +  NPVFYEDEVDIDLNPK+GADW  ++QQKR+ TPGQN KH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGVLHAGNGRVLYVSGIKKNSSLFIAMLEKLRHHYRRAKTITLILDNYIIHKSKQTER  273
            YL+G ++A  GRV YVSG  KNS LFI MLEKLR+ YRRA TITLILDNY+IHKS++ E 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKKNPKFCLVFQPVYSPWVNHIERLWHKLHETITRNHQCRGMANLLARVKYFMDTVSPF  333
            WL+ NPKF L+F P YSPW+N IE LW  LHET+TRNHQCR M +LL +VK FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGN  336
            PG+
Sbjct  301  PGS  303

109) ASA_1421 in NC_009348


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  305 bits (1144),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 176/303 (59%), Positives = 234/303 (78%), Gaps = 0/303 (0%)

Query  34   ILLLHEGRTVTDVHHLTGAARSTIGRWLRWYRDEGIDALEALPAGRAPVLPIAKMVTLLV  93
            +L+LH G TV++  +   AARS++GRW+ W+   G ++L++LP+ R+   P+ ++++ L+
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLMQFSPQDFGYQRSRWCTELLAIKINRLTGLNVAASTLRRWLPRMGIVWRRPVPTLRIK  153
            LLMQ +PQ+FG  RSRW T LL+IKI+ L +++++ ST+ R L + GIVWRR+ PTL++K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPAYQEKMANIDAALARCNADNPVFYEDEVDIDLNPKLGADWMFRAQQKRVVTPGQNAKH  213
            DP Y EK+A I++AL + +  NPVFYEDEVDIDLNPK+GADW  ++QQKR+ TPGQN KH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGVLHAGNGRVLYVSGIKKNSSLFIAMLEKLRHHYRRAKTITLILDNYIIHKSKQTER  273
            YL+G ++A  GRV YVSG  KNS LFI MLEKLR+ YRRA TITLILDNY+IHKS++ E 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKKNPKFCLVFQPVYSPWVNHIERLWHKLHETITRNHQCRGMANLLARVKYFMDTVSPF  333
            WL+ NPKF L+F P YSPW+N IE LW  LHET+TRNHQCR M +LL +VK FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGN  336
            PG+
Sbjct  301  PGS  303

110) ASA_1470 in NC_009348


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  305 bits (1144),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 176/303 (59%), Positives = 234/303 (78%), Gaps = 0/303 (0%)

Query  34   ILLLHEGRTVTDVHHLTGAARSTIGRWLRWYRDEGIDALEALPAGRAPVLPIAKMVTLLV  93
            +L+LH G TV++  +   AARS++GRW+ W+   G ++L++LP+ R+   P+ ++++ L+
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLMQFSPQDFGYQRSRWCTELLAIKINRLTGLNVAASTLRRWLPRMGIVWRRPVPTLRIK  153
            LLMQ +PQ+FG  RSRW T LL+IKI+ L +++++ ST+ R L + GIVWRR+ PTL++K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPAYQEKMANIDAALARCNADNPVFYEDEVDIDLNPKLGADWMFRAQQKRVVTPGQNAKH  213
            DP Y EK+A I++AL + +  NPVFYEDEVDIDLNPK+GADW  ++QQKR+ TPGQN KH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGVLHAGNGRVLYVSGIKKNSSLFIAMLEKLRHHYRRAKTITLILDNYIIHKSKQTER  273
            YL+G ++A  GRV YVSG  KNS LFI MLEKLR+ YRRA TITLILDNY+IHKS++ E 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKKNPKFCLVFQPVYSPWVNHIERLWHKLHETITRNHQCRGMANLLARVKYFMDTVSPF  333
            WL+ NPKF L+F P YSPW+N IE LW  LHET+TRNHQCR M +LL +VK FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGN  336
            PG+
Sbjct  301  PGS  303

111) ASA_1653 in NC_009348


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  305 bits (1144),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 176/303 (59%), Positives = 234/303 (78%), Gaps = 0/303 (0%)

Query  34   ILLLHEGRTVTDVHHLTGAARSTIGRWLRWYRDEGIDALEALPAGRAPVLPIAKMVTLLV  93
            +L+LH G TV++  +   AARS++GRW+ W+   G ++L++LP+ R+   P+ ++++ L+
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLMQFSPQDFGYQRSRWCTELLAIKINRLTGLNVAASTLRRWLPRMGIVWRRPVPTLRIK  153
            LLMQ +PQ+FG  RSRW T LL+IKI+ L +++++ ST+ R L + GIVWRR+ PTL++K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPAYQEKMANIDAALARCNADNPVFYEDEVDIDLNPKLGADWMFRAQQKRVVTPGQNAKH  213
            DP Y EK+A I++AL + +  NPVFYEDEVDIDLNPK+GADW  ++QQKR+ TPGQN KH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGVLHAGNGRVLYVSGIKKNSSLFIAMLEKLRHHYRRAKTITLILDNYIIHKSKQTER  273
            YL+G ++A  GRV YVSG  KNS LFI MLEKLR+ YRRA TITLILDNY+IHKS++ E 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKKNPKFCLVFQPVYSPWVNHIERLWHKLHETITRNHQCRGMANLLARVKYFMDTVSPF  333
            WL+ NPKF L+F P YSPW+N IE LW  LHET+TRNHQCR M +LL +VK FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGN  336
            PG+
Sbjct  301  PGS  303

112) ASA_1925 in NC_009348


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  305 bits (1144),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 176/303 (59%), Positives = 234/303 (78%), Gaps = 0/303 (0%)

Query  34   ILLLHEGRTVTDVHHLTGAARSTIGRWLRWYRDEGIDALEALPAGRAPVLPIAKMVTLLV  93
            +L+LH G TV++  +   AARS++GRW+ W+   G ++L++LP+ R+   P+ ++++ L+
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLMQFSPQDFGYQRSRWCTELLAIKINRLTGLNVAASTLRRWLPRMGIVWRRPVPTLRIK  153
            LLMQ +PQ+FG  RSRW T LL+IKI+ L +++++ ST+ R L + GIVWRR+ PTL++K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPAYQEKMANIDAALARCNADNPVFYEDEVDIDLNPKLGADWMFRAQQKRVVTPGQNAKH  213
            DP Y EK+A I++AL + +  NPVFYEDEVDIDLNPK+GADW  ++QQKR+ TPGQN KH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGVLHAGNGRVLYVSGIKKNSSLFIAMLEKLRHHYRRAKTITLILDNYIIHKSKQTER  273
            YL+G ++A  GRV YVSG  KNS LFI MLEKLR+ YRRA TITLILDNY+IHKS++ E 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKKNPKFCLVFQPVYSPWVNHIERLWHKLHETITRNHQCRGMANLLARVKYFMDTVSPF  333
            WL+ NPKF L+F P YSPW+N IE LW  LHET+TRNHQCR M +LL +VK FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGN  336
            PG+
Sbjct  301  PGS  303

113) ASA_2252 in NC_009348


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  305 bits (1144),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 176/303 (59%), Positives = 234/303 (78%), Gaps = 0/303 (0%)

Query  34   ILLLHEGRTVTDVHHLTGAARSTIGRWLRWYRDEGIDALEALPAGRAPVLPIAKMVTLLV  93
            +L+LH G TV++  +   AARS++GRW+ W+   G ++L++LP+ R+   P+ ++++ L+
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLMQFSPQDFGYQRSRWCTELLAIKINRLTGLNVAASTLRRWLPRMGIVWRRPVPTLRIK  153
            LLMQ +PQ+FG  RSRW T LL+IKI+ L +++++ ST+ R L + GIVWRR+ PTL++K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPAYQEKMANIDAALARCNADNPVFYEDEVDIDLNPKLGADWMFRAQQKRVVTPGQNAKH  213
            DP Y EK+A I++AL + +  NPVFYEDEVDIDLNPK+GADW  ++QQKR+ TPGQN KH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGVLHAGNGRVLYVSGIKKNSSLFIAMLEKLRHHYRRAKTITLILDNYIIHKSKQTER  273
            YL+G ++A  GRV YVSG  KNS LFI MLEKLR+ YRRA TITLILDNY+IHKS++ E 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKKNPKFCLVFQPVYSPWVNHIERLWHKLHETITRNHQCRGMANLLARVKYFMDTVSPF  333
            WL+ NPKF L+F P YSPW+N IE LW  LHET+TRNHQCR M +LL +VK FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGN  336
            PG+
Sbjct  301  PGS  303

114) ASA_2478 in NC_009348


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  305 bits (1144),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 176/303 (59%), Positives = 234/303 (78%), Gaps = 0/303 (0%)

Query  34   ILLLHEGRTVTDVHHLTGAARSTIGRWLRWYRDEGIDALEALPAGRAPVLPIAKMVTLLV  93
            +L+LH G TV++  +   AARS++GRW+ W+   G ++L++LP+ R+   P+ ++++ L+
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLMQFSPQDFGYQRSRWCTELLAIKINRLTGLNVAASTLRRWLPRMGIVWRRPVPTLRIK  153
            LLMQ +PQ+FG  RSRW T LL+IKI+ L +++++ ST+ R L + GIVWRR+ PTL++K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPAYQEKMANIDAALARCNADNPVFYEDEVDIDLNPKLGADWMFRAQQKRVVTPGQNAKH  213
            DP Y EK+A I++AL + +  NPVFYEDEVDIDLNPK+GADW  ++QQKR+ TPGQN KH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGVLHAGNGRVLYVSGIKKNSSLFIAMLEKLRHHYRRAKTITLILDNYIIHKSKQTER  273
            YL+G ++A  GRV YVSG  KNS LFI MLEKLR+ YRRA TITLILDNY+IHKS++ E 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKKNPKFCLVFQPVYSPWVNHIERLWHKLHETITRNHQCRGMANLLARVKYFMDTVSPF  333
            WL+ NPKF L+F P YSPW+N IE LW  LHET+TRNHQCR M +LL +VK FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGN  336
            PG+
Sbjct  301  PGS  303

115) ASA_3034 in NC_009348


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  305 bits (1144),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 176/303 (59%), Positives = 234/303 (78%), Gaps = 0/303 (0%)

Query  34   ILLLHEGRTVTDVHHLTGAARSTIGRWLRWYRDEGIDALEALPAGRAPVLPIAKMVTLLV  93
            +L+LH G TV++  +   AARS++GRW+ W+   G ++L++LP+ R+   P+ ++++ L+
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLMQFSPQDFGYQRSRWCTELLAIKINRLTGLNVAASTLRRWLPRMGIVWRRPVPTLRIK  153
            LLMQ +PQ+FG  RSRW T LL+IKI+ L +++++ ST+ R L + GIVWRR+ PTL++K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPAYQEKMANIDAALARCNADNPVFYEDEVDIDLNPKLGADWMFRAQQKRVVTPGQNAKH  213
            DP Y EK+A I++AL + +  NPVFYEDEVDIDLNPK+GADW  ++QQKR+ TPGQN KH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGVLHAGNGRVLYVSGIKKNSSLFIAMLEKLRHHYRRAKTITLILDNYIIHKSKQTER  273
            YL+G ++A  GRV YVSG  KNS LFI MLEKLR+ YRRA TITLILDNY+IHKS++ E 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKKNPKFCLVFQPVYSPWVNHIERLWHKLHETITRNHQCRGMANLLARVKYFMDTVSPF  333
            WL+ NPKF L+F P YSPW+N IE LW  LHET+TRNHQCR M +LL +VK FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGN  336
            PG+
Sbjct  301  PGS  303

116) ASA_3037 in NC_009348


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  305 bits (1144),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 176/303 (59%), Positives = 234/303 (78%), Gaps = 0/303 (0%)

Query  34   ILLLHEGRTVTDVHHLTGAARSTIGRWLRWYRDEGIDALEALPAGRAPVLPIAKMVTLLV  93
            +L+LH G TV++  +   AARS++GRW+ W+   G ++L++LP+ R+   P+ ++++ L+
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLMQFSPQDFGYQRSRWCTELLAIKINRLTGLNVAASTLRRWLPRMGIVWRRPVPTLRIK  153
            LLMQ +PQ+FG  RSRW T LL+IKI+ L +++++ ST+ R L + GIVWRR+ PTL++K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPAYQEKMANIDAALARCNADNPVFYEDEVDIDLNPKLGADWMFRAQQKRVVTPGQNAKH  213
            DP Y EK+A I++AL + +  NPVFYEDEVDIDLNPK+GADW  ++QQKR+ TPGQN KH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGVLHAGNGRVLYVSGIKKNSSLFIAMLEKLRHHYRRAKTITLILDNYIIHKSKQTER  273
            YL+G ++A  GRV YVSG  KNS LFI MLEKLR+ YRRA TITLILDNY+IHKS++ E 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKKNPKFCLVFQPVYSPWVNHIERLWHKLHETITRNHQCRGMANLLARVKYFMDTVSPF  333
            WL+ NPKF L+F P YSPW+N IE LW  LHET+TRNHQCR M +LL +VK FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGN  336
            PG+
Sbjct  301  PGS  303

117) ASA_3543 in NC_009348


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  305 bits (1144),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 176/303 (59%), Positives = 234/303 (78%), Gaps = 0/303 (0%)

Query  34   ILLLHEGRTVTDVHHLTGAARSTIGRWLRWYRDEGIDALEALPAGRAPVLPIAKMVTLLV  93
            +L+LH G TV++  +   AARS++GRW+ W+   G ++L++LP+ R+   P+ ++++ L+
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLMQFSPQDFGYQRSRWCTELLAIKINRLTGLNVAASTLRRWLPRMGIVWRRPVPTLRIK  153
            LLMQ +PQ+FG  RSRW T LL+IKI+ L +++++ ST+ R L + GIVWRR+ PTL++K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPAYQEKMANIDAALARCNADNPVFYEDEVDIDLNPKLGADWMFRAQQKRVVTPGQNAKH  213
            DP Y EK+A I++AL + +  NPVFYEDEVDIDLNPK+GADW  ++QQKR+ TPGQN KH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGVLHAGNGRVLYVSGIKKNSSLFIAMLEKLRHHYRRAKTITLILDNYIIHKSKQTER  273
            YL+G ++A  GRV YVSG  KNS LFI MLEKLR+ YRRA TITLILDNY+IHKS++ E 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKKNPKFCLVFQPVYSPWVNHIERLWHKLHETITRNHQCRGMANLLARVKYFMDTVSPF  333
            WL+ NPKF L+F P YSPW+N IE LW  LHET+TRNHQCR M +LL +VK FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGN  336
            PG+
Sbjct  301  PGS  303

118) ASA_3677 in NC_009348


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  305 bits (1144),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 176/303 (59%), Positives = 234/303 (78%), Gaps = 0/303 (0%)

Query  34   ILLLHEGRTVTDVHHLTGAARSTIGRWLRWYRDEGIDALEALPAGRAPVLPIAKMVTLLV  93
            +L+LH G TV++  +   AARS++GRW+ W+   G ++L++LP+ R+   P+ ++++ L+
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLMQFSPQDFGYQRSRWCTELLAIKINRLTGLNVAASTLRRWLPRMGIVWRRPVPTLRIK  153
            LLMQ +PQ+FG  RSRW T LL+IKI+ L +++++ ST+ R L + GIVWRR+ PTL++K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPAYQEKMANIDAALARCNADNPVFYEDEVDIDLNPKLGADWMFRAQQKRVVTPGQNAKH  213
            DP Y EK+A I++AL + +  NPVFYEDEVDIDLNPK+GADW  ++QQKR+ TPGQN KH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGVLHAGNGRVLYVSGIKKNSSLFIAMLEKLRHHYRRAKTITLILDNYIIHKSKQTER  273
            YL+G ++A  GRV YVSG  KNS LFI MLEKLR+ YRRA TITLILDNY+IHKS++ E 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKKNPKFCLVFQPVYSPWVNHIERLWHKLHETITRNHQCRGMANLLARVKYFMDTVSPF  333
            WL+ NPKF L+F P YSPW+N IE LW  LHET+TRNHQCR M +LL +VK FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGN  336
            PG+
Sbjct  301  PGS  303

119) ASA_3873 in NC_009348


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  305 bits (1144),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 176/303 (59%), Positives = 234/303 (78%), Gaps = 0/303 (0%)

Query  34   ILLLHEGRTVTDVHHLTGAARSTIGRWLRWYRDEGIDALEALPAGRAPVLPIAKMVTLLV  93
            +L+LH G TV++  +   AARS++GRW+ W+   G ++L++LP+ R+   P+ ++++ L+
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLMQFSPQDFGYQRSRWCTELLAIKINRLTGLNVAASTLRRWLPRMGIVWRRPVPTLRIK  153
            LLMQ +PQ+FG  RSRW T LL+IKI+ L +++++ ST+ R L + GIVWRR+ PTL++K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPAYQEKMANIDAALARCNADNPVFYEDEVDIDLNPKLGADWMFRAQQKRVVTPGQNAKH  213
            DP Y EK+A I++AL + +  NPVFYEDEVDIDLNPK+GADW  ++QQKR+ TPGQN KH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGVLHAGNGRVLYVSGIKKNSSLFIAMLEKLRHHYRRAKTITLILDNYIIHKSKQTER  273
            YL+G ++A  GRV YVSG  KNS LFI MLEKLR+ YRRA TITLILDNY+IHKS++ E 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKKNPKFCLVFQPVYSPWVNHIERLWHKLHETITRNHQCRGMANLLARVKYFMDTVSPF  333
            WL+ NPKF L+F P YSPW+N IE LW  LHET+TRNHQCR M +LL +VK FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGN  336
            PG+
Sbjct  301  PGS  303

120) ASA_4327 in NC_009348


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  305 bits (1144),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 176/303 (59%), Positives = 234/303 (78%), Gaps = 0/303 (0%)

Query  34   ILLLHEGRTVTDVHHLTGAARSTIGRWLRWYRDEGIDALEALPAGRAPVLPIAKMVTLLV  93
            +L+LH G TV++  +   AARS++GRW+ W+   G ++L++LP+ R+   P+ ++++ L+
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLMQFSPQDFGYQRSRWCTELLAIKINRLTGLNVAASTLRRWLPRMGIVWRRPVPTLRIK  153
            LLMQ +PQ+FG  RSRW T LL+IKI+ L +++++ ST+ R L + GIVWRR+ PTL++K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPAYQEKMANIDAALARCNADNPVFYEDEVDIDLNPKLGADWMFRAQQKRVVTPGQNAKH  213
            DP Y EK+A I++AL + +  NPVFYEDEVDIDLNPK+GADW  ++QQKR+ TPGQN KH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGVLHAGNGRVLYVSGIKKNSSLFIAMLEKLRHHYRRAKTITLILDNYIIHKSKQTER  273
            YL+G ++A  GRV YVSG  KNS LFI MLEKLR+ YRRA TITLILDNY+IHKS++ E 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKKNPKFCLVFQPVYSPWVNHIERLWHKLHETITRNHQCRGMANLLARVKYFMDTVSPF  333
            WL+ NPKF L+F P YSPW+N IE LW  LHET+TRNHQCR M +LL +VK FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGN  336
            PG+
Sbjct  301  PGS  303

121) ASA_P5G093 in NC_009350


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  305 bits (1144),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 176/303 (59%), Positives = 234/303 (78%), Gaps = 0/303 (0%)

Query  34   ILLLHEGRTVTDVHHLTGAARSTIGRWLRWYRDEGIDALEALPAGRAPVLPIAKMVTLLV  93
            +L+LH G TV++  +   AARS++GRW+ W+   G ++L++LP+ R+   P+ ++++ L+
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLMQFSPQDFGYQRSRWCTELLAIKINRLTGLNVAASTLRRWLPRMGIVWRRPVPTLRIK  153
            LLMQ +PQ+FG  RSRW T LL+IKI+ L +++++ ST+ R L + GIVWRR+ PTL++K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPAYQEKMANIDAALARCNADNPVFYEDEVDIDLNPKLGADWMFRAQQKRVVTPGQNAKH  213
            DP Y EK+A I++AL + +  NPVFYEDEVDIDLNPK+GADW  ++QQKR+ TPGQN KH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGVLHAGNGRVLYVSGIKKNSSLFIAMLEKLRHHYRRAKTITLILDNYIIHKSKQTER  273
            YL+G ++A  GRV YVSG  KNS LFI MLEKLR+ YRRA TITLILDNY+IHKS++ E 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKKNPKFCLVFQPVYSPWVNHIERLWHKLHETITRNHQCRGMANLLARVKYFMDTVSPF  333
            WL+ NPKF L+F P YSPW+N IE LW  LHET+TRNHQCR M +LL +VK FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGN  336
            PG+
Sbjct  301  PGS  303

122) ASA_P5G010 in NC_009350


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  304 bits (1141),  Expect = 3e-84, Method: Compositional matrix adjust.
 Identities = 175/303 (58%), Positives = 233/303 (77%), Gaps = 0/303 (0%)

Query  34   ILLLHEGRTVTDVHHLTGAARSTIGRWLRWYRDEGIDALEALPAGRAPVLPIAKMVTLLV  93
            +L+LH G TV++  +   AARS++GRW+ W+   G ++L++LP+ R+   P+ ++++ L+
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLMQFSPQDFGYQRSRWCTELLAIKINRLTGLNVAASTLRRWLPRMGIVWRRPVPTLRIK  153
            LLMQ +PQ+FG  RSRW T LL+IKI+ L +++++ ST+ R L + GIVWRR+ PTL++K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPAYQEKMANIDAVLARCNADNPVFYEDEVDIDLNPKLGADWMFRAQQKRVVTPGQNAKH  213
            DP Y EK+A I++ L + +  NPVFYEDEVDIDLNPK+GADW  ++QQKR+ TPGQN KH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGVLHAGNGRVLYVSGIKKNSSLFIAMLEKLRHHYRRAKTITLILDNYIIHKSKQTER  273
            YL+G ++A  GRV YVSG  KNS LFI MLEKLR+ YRRA TITLILDNY+IHKS++ E 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKKNPKFCLVFQPVYSPWVNHIERLWHKLHETITRNHQCRGMANLLARVKYFMDTVSPF  333
            WL+ NPKF L+F P YSPW+N IE LW  LHET+TRNHQCR M +LL +VK FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGN  336
            PG+
Sbjct  301  PGS  303

123) ASA_1780 in NC_009348


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  303 bits (1134),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 175/303 (58%), Positives = 233/303 (77%), Gaps = 0/303 (0%)

Query  34   ILLLHEGRTVTDVHHLTGAARSTIGRWLRWYRDEGIDALEALPAGRAPVLPIAKMVTLLV  93
            +L+LH G TV++  +   AARS++GRW+ W+   G ++L++LP+ R+   P+ ++++ L+
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLMQFSPQDFGYQRSRWCTELLAIKINRLTGLNVAASTLRRWLPRMGIVWRRPVPTLRIK  153
            LLMQ +PQ+FG  RSRW T LL+IKI+ L +++++ ST+ R L + GIVWRR+ PTL++K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPAYQEKMANIDAALARCNADNPVFYEDEVDIDLNPKLGADWMFRAQQKRVVTPGQNAKH  213
            DP Y EK+A I++AL + +  NPVFYEDEVDIDLNPK+GADW  ++QQKR+ TPGQN KH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGVLHAGNGRVLYVSGIKKNSSLFIAMLEKLRHHYRRAKTITLILDNYIIHKSKQTER  273
            YL+G ++A  GRV YVSG  KNS LFI MLEKLR+ YRRA TITLILDNY+IHKS++ E 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKKNPKFCLVFQPVYSPWVNHIERLWHKSHETITRNHQCRGMANLLARVKYFMDTVSPF  333
            WL+ NPKF L+F P YSPW+N IE LW   HET+TRNHQCR M +LL +VK FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGN  336
            PG+
Sbjct  301  PGS  303

124) ASA_1872 in NC_009348


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  303 bits (1134),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 175/303 (58%), Positives = 233/303 (77%), Gaps = 0/303 (0%)

Query  34   ILLLHEGRTVTDVHHLTGAARSTIGRWLRWYRDEGIDALEALPAGRAPVLPIAKMVTLLV  93
            +L+LH G TV++  +   AARS++GRW+ W+   G ++L++LP+ R+   P+ ++++ L+
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLMQFSPQDFGYQRSRWCTELLAIKINRLTGLNVAASTLRRWLPRMGIVWRRPVPTLRIK  153
            LLMQ +PQ+FG  RSRW T LL+IKI+ L +++++ ST+ R L + GIVWRR+ PTL++K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPAYQEKMANIDAALARCNADNPVFYEDEVDIDLNPKLGADWMFRAQQKRVVTPGQNAKH  213
            DP Y EK+A I++AL + +  NPVFYEDEVDIDLNPK+GADW  ++QQKR+ TPGQN KH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGVLHAGNGRVLYVSGIKKNSSLFIAMLEKLRHHYRRAKTITLILDNYIIHKSKQTER  273
            YL+G ++A  GRV YVSG  KNS LFI MLEKLR+ YRRA TITLILDNY+IHKS++ E 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKKNPKFCLVFQPVYSPWVNHIERLWHKSHETITRNHQCRGMANLLARVKYFMDTVSPF  333
            WL+ NPKF L+F P YSPW+N IE LW   HET+TRNHQCR M +LL +VK FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGN  336
            PG+
Sbjct  301  PGS  303

125) ASA_3080 in NC_009348


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  303 bits (1137),  Expect = 5e-84, Method: Compositional matrix adjust.
 Identities = 175/303 (58%), Positives = 233/303 (77%), Gaps = 0/303 (0%)

Query  34   ILLLHEGRTVTDVHHLTGAARSTIGRWLRWYRDEGIDALEALPAGRAPVLPIAKMVTLLV  93
            +L+LH G TV++  +   AARS++GRW+ W+   G ++L++LP+ R+   P+ ++++ L+
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLMQFSPQDFGYQRSRWCTELLAIKINRLTGLNVAASTLRRWLPRMGIVWRRPVPTLRIK  153
            LLMQ +PQ+FG  RSRW T LL+IKI+ L +++++ ST+ R L + GIVWRR+ PTL++K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPAYQEKMANIDAALARCNADNPGFYEDEVDIDLNPKLGADWMFRAQQKRVVTPGQNAKH  213
            DP Y EK+A I++AL + +  NP FYEDEVDIDLNPK+GADW  ++QQKR+ TPGQN KH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGVLHAGNGRVLYVSGIKKNSSLFIAMLEKLRHHYRRAKTITLILDNYIIHKSKQTER  273
            YL+G ++A  GRV YVSG  KNS LFI MLEKLR+ YRRA TITLILDNY+IHKS++ E 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKKNPKFCLVFQPVYSPWVNHIERLWHKLHETITRNHQCRGMANLLARVKYFMDTVSPF  333
            WL+ NPKF L+F P YSPW+N IE LW  LHET+TRNHQCR M +LL +VK FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGN  336
            PG+
Sbjct  301  PGS  303

126) ASA_2237 in NC_009348


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  301 bits (1129),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 176/303 (59%), Positives = 233/303 (77%), Gaps = 0/303 (0%)

Query  34   ILLLHEGRTVTDVHHLTGAARSTIGRWLRWYRDEGIDALEALPAGRAPVLPIAKMVTLLV  93
            +L+LH G TV++  +   AARS++GRW+ W+   G ++L++LP+ R+   P+ ++++ L+
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   LLMQFSPQDFGYQRSRWCTELLAIKINRLTGLNVAASTLRRWLPRMGIVWRRPVPTLRIK  153
            LLMQ +PQ+FG  RSRW T LL+IKI+ L +++++ ST+ R L + GIVWRR+ PTL++K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPAYQEKMANIDAALARCNADNPVFYEDEVDIDLNPKLGADWMFRAQQKRVVTPGQNAKH  213
            DP Y EK+A I++AL + +  NPVFYEDEVDIDLNPK+GADW  ++QQKR+ TPGQN KH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGVLHAGNGRVLYVSGIKKNSSLFIAMLEKLRHDYRRAKTITLILDNYIIHKSKWTER  273
            YL+G ++A  GRV YVSG  KNS LFI MLEKLR+ YRRA TITLILDNY+IHKS+  E 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKKNPKFCLVFQPVYSPWVNHIERLWHKLHETITRNHQCRGMANLLARVKYFMDTVSPF  333
            WL+ NPKF L+F P YSPW+N IE LW  LHET+TRNHQCR M +LL +VK FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGN  336
            PG+
Sbjct  301  PGS  303

127) tnpA in NC_004347


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  297 bits (1112),  Expect = 6e-82, Method: Compositional matrix adjust.
 Identities = 184/303 (61%), Positives = 241/303 (80%), Gaps = 0/303 (0%)

Query  34   MLMLHQGQSITDVHHATGAARSSIGRWLAWYTESGVDGLKSLTLGRpailpidpillcls  93
            MLMLH+G+++++  ++  AARSS+GRW+ W+T  G +GL+SL   RP   P++ I+  L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   lliqlcpQDFGYQRSRWSSELLAMVINAQLKLSIAASTVHRLLPKAGIVWRRSAPTLRIK  153
            LL+Q  PQ+FG  RSRWS+ LL++ I+  + +SI+ STV R L +AGIVWRR+APTL++K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHQDEKMAEINQALEQCCVEHPVFYEDEVDIDLNPKIGADWMPKGQQKRVVTPGNNRKH  213
            DPH  EK+A I+ ALE+  V +PVFYEDEVDIDLNPKIGADW  KGQQKR+ TPG+N+KH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YIAGALHASTGKVLYVSSDSKASELFIAMLEKLKRHYRKAKTITLILDNYIIHKSRKTVA  273
            Y++G+++A TG+V YVS+ SK S LFI MLEKL++ YR+A TITLILDNY+IHKSRK   
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKHNPKFRLLFQPVYSPWVNKIERLWLALHETVTRNHACRNMRELLGMVWHFMGTVSPF  333
            WL++NPKF+LLF P YSPW+NKIE LWL+LHET+TRNH CR M++LL  V +FM+  SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGS  336
            PGS
Sbjct  301  PGS  303

128) tnpA in NC_004347


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  295 bits (1105),  Expect = 2e-81, Method: Compositional matrix adjust.
 Identities = 184/303 (61%), Positives = 241/303 (80%), Gaps = 0/303 (0%)

Query  34   MLMLHQGQSITDVHHATGAARSSIGRWLAWYTESGVDGLKSLTLGRpailpidpillcls  93
            MLMLH+G+++++  ++  AARSS+GRW+ W+T  G +GL+SL   RP   P++ I+  L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   lliqlcpQDFGYQRSRWSSELLAMVINAQLKLSIAASTVRRLLPKAGIVWRRSAPTLRIK  153
            LL+Q  PQ+FG  RSRWS+ LL++ I+  + +SI+ STV R L +AGIVWRR+APTL++K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHQDEKMAEINQALEQCCVEHPVFYEDEVDIDLNPKIGADWMPKGQQKRVVTPGNNRKH  213
            DPH  EK+A I+ ALE+  V +PVFYEDEVDIDLNPKIGADW  KGQQKR+ TPG+N+KH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YIAGALHASTGKVLYVSSDSKASELFIAMLEKLKRHYRKAKTITLILDNYIIHKSRKTVA  273
            Y++G+++A TG+V YVS+ SK S LFI MLEKL++ YR+A TITLILDNY+IHKSRK   
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKHNPKFRLLFQPVYSPWVNKIERLWLALHETVTRNHACRNMRELLGMVWHFMGTVSPF  333
            WL++NPKF+LLF P YSPW+NKIE LWL+LHET+TRNH CR M++LL  V +FM+  SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGS  336
            PGS
Sbjct  301  PGS  303

129) tnpA in NC_004347


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  295 bits (1105),  Expect = 2e-81, Method: Compositional matrix adjust.
 Identities = 184/303 (61%), Positives = 241/303 (80%), Gaps = 0/303 (0%)

Query  34   MLMLHQGQSITDVHHATGAARSSIGRWLAWYTESGVDGLKSLTLGRpailpidpillcls  93
            MLMLH+G+++++  ++  AARSS+GRW+ W+T  G +GL+SL   RP   P++ I+  L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   lliqlcpQDFGYQRSRWSSELLAMVINAQLKLSIAASTVRRLLPKAGIVWRRSAPTLRIK  153
            LL+Q  PQ+FG  RSRWS+ LL++ I+  + +SI+ STV R L +AGIVWRR+APTL++K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPHQDEKMAEINQALEQCCVEHPVFYEDEVDIDLNPKIGADWMPKGQQKRVVTPGNNRKH  213
            DPH  EK+A I+ ALE+  V +PVFYEDEVDIDLNPKIGADW  KGQQKR+ TPG+N+KH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YIAGALHASTGKVLYVSSDSKASELFIAMLEKLKRHYRKAKTITLILDNYIIHKSRKTVA  273
            Y++G+++A TG+V YVS+ SK S LFI MLEKL++ YR+A TITLILDNY+IHKSRK   
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLKHNPKFRLLFQPVYSPWVNKIERLWLALHETVTRNHACRNMRELLGMVWHFMGTVSPF  333
            WL++NPKF+LLF P YSPW+NKIE LWL+LHET+TRNH CR M++LL  V +FM+  SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGS  336
            PGS
Sbjct  301  PGS  303

130) XNC1_0599 in NC_014228


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  292 bits (1093),  Expect = 2e-80, Method: Compositional matrix adjust.
 Identities = 172/308 (56%), Positives = 229/308 (75%), Gaps = 3/308 (0%)

Query  34   LLLLNEGVTVTKVAKILHAARSSVNRWVKGFRLYGLEGLNSLPAGRPAVWDLTPLDNILF  93
            +L+L+ G TV+  A+ L AARSSV RW++ F L G EGL+SLP+ RP  W +  + + L+
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   FLLQQSPQELGYLRSRWSLELINKTLNELFNISLTSSTLYRYFVQEDIVWRRASPTVKQP  153
            +L+QQ+PQ++G LRSRWS  L++  +++LF+IS++ ST+YR + Q +IVWRRA+PT+K  
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPEYNEKMAKITEAKANISERHPVFYEDEVDIDLNPKIGADWCFKGQQKRIVTPGKNEKY  213
            DP+Y EK+A I  A  +    +PVFYEDEVDIDLNPKIGADWC KGQQKRI TPG+N+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGCLNAQTKEITYVKGEKKNSDLFIKMLDELNARHPHAETITLILDNDCIHKSHKVKN  273
            YL+G +NA T  + YV G  KNS LFI+ML+ L     +AETITLILDN  IHKS+KV +
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLTQHGRFTLLFLPVYSPWLNKIERLWQSLHETVTRNHCCQFMWQLLNHVDVFL---RSF  330
            WL ++ +F LLFLP YSPWLNKIE LW SLHET+TRNH C++MWQLL  V  F+    +F
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  331  SSQQKPGI  338
            ++ Q  ++
Sbjct  301  PGSQAVAV  308

131) ISPlu16B in NC_005126


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  290 bits (1085),  Expect = 7e-80, Method: Compositional matrix adjust.
 Identities = 181/310 (59%), Positives = 235/310 (76%), Gaps = 2/310 (0%)

Query  34   LLMLNEGLTVTYVAKTLHAARSSVNRWVQWFTLYGLEGLESLPVGRPVVWDlsplynlll  93
            +LML+ G TV+  A+TL AARSSV RW++WFTL G EGL+SLP  RP  W +  + + L+
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   fllqqspqklGYLRSRWSLELMTHTLNELLNLSLTQNVLYRYFAQVGIVWRRAAPTVKQP  153
            +L+QQ+PQ +G LRSRWS  L++  +++L+++S++ + +YR + Q GIVWRRAAPT+K  
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPEYDEKMAKIAEAKANISEKHPVFYEDEVDIDLNPKIGADWCFKGQQKRVITPGKNEKH  213
            DP+Y EK+A I  A  +    +PVFYEDEVDIDLNPKIGADWC KGQQKR+ TPG+N+KH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGCLNAQTEQITYVKGIKKNSDLFIKMLDELNHQYPHAETLTLILDNYCIHKSQKVKD  273
            YL+G +NA T ++ YV G  KNS LFI+ML+ L + Y +AET+TLILDNY IHKS+KV D
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLARHPKFTLLFLPVYSPWLNKIERLWQSLHETITRNHCCQFMWQLLNYVDAFLASFSSQ  333
            WL  +PKF LLFLP YSPWLNKIE LW SLHET+TRNH C++MWQLL  V  F+A   + 
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMA--VAS  298

Query  334  QKPGRQKMGV  343
              PG Q ++V
Sbjct  299  PFPGSQAVAV  308

132) ISPlu16A in NC_005126


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  290 bits (1085),  Expect = 7e-80, Method: Compositional matrix adjust.
 Identities = 181/310 (59%), Positives = 235/310 (76%), Gaps = 2/310 (0%)

Query  34   LLMLNEGLTVTYVAKTLHAARSSVNRWVQWFTLYGLEGLESLPVGRPVVWDlsplynlll  93
            +LML+ G TV+  A+TL AARSSV RW++WFTL G EGL+SLP  RP  W +  + + L+
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   fllqqspqklGYLRSRWSLELMTHTLNELLNLSLTQNVLYRYFAQVGIVWRRAAPTVKQP  153
            +L+QQ+PQ +G LRSRWS  L++  +++L+++S++ + +YR + Q GIVWRRAAPT+K  
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPEYDEKMAKIAEAKANISEKHPVFYEDEVDIDLNPKIGADWCFKGQQKRVITPGKNEKH  213
            DP+Y EK+A I  A  +    +PVFYEDEVDIDLNPKIGADWC KGQQKR+ TPG+N+KH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGCLNAQTEQITYVKGIKKNSDLFIKMLDELNHQYPHAETLTLILDNYCIHKSQKVKD  273
            YL+G +NA T ++ YV G  KNS LFI+ML+ L + Y +AET+TLILDNY IHKS+KV D
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLARHPKFTLLFLPVYSPWLNKIERLWQSLHETITRNHCCQFMWQLLNYVDAFLASFSSQ  333
            WL  +PKF LLFLP YSPWLNKIE LW SLHET+TRNH C++MWQLL  V  F+A   + 
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMA--VAS  298

Query  334  QKPGRQKMGV  343
              PG Q ++V
Sbjct  299  PFPGSQAVAV  308

133) XNC1_1739 in NC_014228


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  287 bits (1073),  Expect = 6e-79, Method: Compositional matrix adjust.
 Identities = 167/285 (59%), Positives = 216/285 (76%), Gaps = 0/285 (0%)

Query  34   LLLLNEGMTVTKTAKILHAARSSVNRWVRWFRLYGLEGLKSFPAGRPAVWDLTPLHNIVF  93
            +L+L+ G TV+ TA+ L AARSSV RW+ WF L G EGL+S+P+ RP  W +  + + ++
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   FLLQQSPQKLGYLRSRWSLELMCKTLNELFNLSLTSSTLYRYFVQVGIVWRRAAPTVKQP  153
            +L+QQ+PQ +G LRSRWS  L+   +++LF++S++ ST+YR + Q GIVWRRAAPT+K  
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPEYDEKMANITEAEANMSERHPVFYEDEVDIDLNPKIGADWCFKGQQKRIVTPGKNEKY  213
            DP+Y EK+A I  A  +    +PVFYEDEVDIDLNPKIGADWC KGQQKRI TPG+N+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGCLNAQTKEITYVKGEKKNSDLFIKMLDELNARHPHAETITLILDNDCIHKSHKVKN  273
            YL+G +NA T  + YV G  KNS LFI+ML+ L     +AETITLILDN  IHKS+KV +
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLAQHGRFTLLFLPVYSPWLNKIERLWQSLHETVTRNHCCQFMWQ  318
            WL ++ +F LLFLP YSPWLNKIE LW SLHET+TRNH C++MWQ
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQ  285

134) ISPlu10K in NC_005126


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  285 bits (1067),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 191/305 (63%), Positives = 239/305 (79%), Gaps = 1/305 (0%)

Query  34   ILMLHRGESVSLVAKTLCASRSSVYRWINWLTLYGLEGLKSLPVGRPAVWNliplyplls  93
            +LMLHRG++VS  A+TLCA+RSSV RWINW+TL G EGL+SLP  RP  W +  + + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   fllqyspqqlGCLRSRWSLEFFiikinellniklsisTFYRYLHKMGIVWRRAAPTLKLP  153
            +L+Q +PQ++G LRSRWS  ++ IKI++L++I +SIST YR L + GIVWRRAAPTLK+ 
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPEYHEKMAKITEALSTCSEKHPVFYEDEVDIELNPKIGADWYLKGQQKRIVTPGKNQKH  213
            DP+Y EK+A I  AL      +PVFYEDEVDI+LNPKIGADW +KGQQKRI TPG+NQKH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YFAGCLNVQTGKVTYADGLNKNSHLFINVLEELERQYCHAETLTLILDNYSIHKSRRVRD  273
            Y++G +N  TG+V Y  G +KNS LFIN+LE L + Y +AET+TLILDNY IHKSR+V D
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLACHPKFNLLFLPVYSPWLNKIERLWQSLHETVTRNHGCQYMWQLLEKVKTFLN-SCPY  332
            WL  +PKF+LLFLP YSPWLNKIE LW SLHET+TRNH C+YMWQLL KVK F+  + P+
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  333  RNSRE  337
              S+ 
Sbjct  301  PGSQA  305

135) ISPlu10J in NC_005126


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  285 bits (1067),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 191/305 (63%), Positives = 239/305 (79%), Gaps = 1/305 (0%)

Query  34   ILMLHRGESVSLVAKTLCASRSSVYRWINWLTLYGLEGLKSLPVGRPAVWNliplyplls  93
            +LMLHRG++VS  A+TLCA+RSSV RWINW+TL G EGL+SLP  RP  W +  + + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   fllqyspqqlGCLRSRWSLEFFiikinellniklsisTFYRYLHKMGIVWRRAAPTLKLP  153
            +L+Q +PQ++G LRSRWS  ++ IKI++L++I +SIST YR L + GIVWRRAAPTLK+ 
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPEYHEKMAKITEALSTCSEKHPVFYEDEVDIELNPKIGADWYLKGQQKRIVTPGKNQKH  213
            DP+Y EK+A I  AL      +PVFYEDEVDI+LNPKIGADW +KGQQKRI TPG+NQKH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YFAGCLNVQTGKVTYADGLNKNSQLFINVLEELERQYCHAETLTLILDNYSIHKSRRVRD  273
            Y++G +N  TG+V Y  G +KNS LFIN+LE L + Y +AET+TLILDNY IHKSR+V D
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLACHPKFNLLFLPVYSPWLNKIERLWQSLHETVTRNHGCQYMWQLLEKVKTFLN-SCPY  332
            WL  +PKF+LLFLP YSPWLNKIE LW SLHET+TRNH C+YMWQLL KVK F+  + P+
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  333  RNSRE  337
              S+ 
Sbjct  301  PGSQA  305

136) ISPlu10I in NC_005126


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  285 bits (1067),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 191/305 (63%), Positives = 239/305 (79%), Gaps = 1/305 (0%)

Query  34   ILMLHRGESVSLVAKTLCASRSSVYRWINWLTLYGLEGLKSLPVGRPAVWNliplyplls  93
            +LMLHRG++VS  A+TLCA+RSSV RWINW+TL G EGL+SLP  RP  W +  + + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   fllqyspqqlGCLRSRWSLEFFiikinellniklsisTFYRYLHKMGIVWRRAAPTLKLP  153
            +L+Q +PQ++G LRSRWS  ++ IKI++L++I +SIST YR L + GIVWRRAAPTLK+ 
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPEYHEKMAKITEALSTCSEKHPVFYEDEVDIELNPKIGADWYLKGQQKRIVTPGKNQKH  213
            DP+Y EK+A I  AL      +PVFYEDEVDI+LNPKIGADW +KGQQKRI TPG+NQKH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YFAGCLNVQTGKVTYADGLNKNSQLFINVLEELERQYCHAETLTLILDNYSIHKSRRVRD  273
            Y++G +N  TG+V Y  G +KNS LFIN+LE L + Y +AET+TLILDNY IHKSR+V D
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLACHPKFNLLFLPVYSPWLNKIERLWQSLHETVTRNHGCQYMWQLLEKVKTFLN-SCPY  332
            WL  +PKF+LLFLP YSPWLNKIE LW SLHET+TRNH C+YMWQLL KVK F+  + P+
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  333  RNSRE  337
              S+ 
Sbjct  301  PGSQA  305

137) ISPlu10H in NC_005126


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  285 bits (1067),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 191/305 (63%), Positives = 239/305 (79%), Gaps = 1/305 (0%)

Query  34   ILMLHRGESVSLVAKTLCASRSSVYRWINWLTLYGLEGLKSLPVGRPAVWNliplyplls  93
            +LMLHRG++VS  A+TLCA+RSSV RWINW+TL G EGL+SLP  RP  W +  + + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   fllqyspqqlGCLRSRWSLEFFiikinellniklsisTFYRYLHKMGIVWRRAAPTLKLP  153
            +L+Q +PQ++G LRSRWS  ++ IKI++L++I +SIST YR L + GIVWRRAAPTLK+ 
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPEYHEKMAKITEALSTCSEKHPVFYEDEVDIELNPKIGADWYLKGQQKRIVTPGKNQKH  213
            DP+Y EK+A I  AL      +PVFYEDEVDI+LNPKIGADW +KGQQKRI TPG+NQKH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YFAGCLNVQTGKVTYADGLNKNSQLFINVLEELERQYCHAETLTLILDNYSIHKSRRVRD  273
            Y++G +N  TG+V Y  G +KNS LFIN+LE L + Y +AET+TLILDNY IHKSR+V D
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLACHPKFNLLFLPVYSPWLNKIERLWQSLHETVTRNHGCQYMWQLLEKVKTFLN-SCPY  332
            WL  +PKF+LLFLP YSPWLNKIE LW SLHET+TRNH C+YMWQLL KVK F+  + P+
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  333  RNSRE  337
              S+ 
Sbjct  301  PGSQA  305

138) ISPlu10G in NC_005126


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  285 bits (1067),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 191/305 (63%), Positives = 239/305 (79%), Gaps = 1/305 (0%)

Query  34   ILMLHRGESVSLVAKTLCASRSSVYRWINWLTLYGLEGLKSLPVGRPAVWNliplyplls  93
            +LMLHRG++VS  A+TLCA+RSSV RWINW+TL G EGL+SLP  RP  W +  + + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   fllqyspqqlGCLRSRWSLEFFiikinellniklsisTFYRYLHKMGIVWRRAAPTLKLP  153
            +L+Q +PQ++G LRSRWS  ++ IKI++L++I +SIST YR L + GIVWRRAAPTLK+ 
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPEYHEKMAKITEALSTCSEKHPVFYEDEVDIELNPKIGADWYLKGQQKRIVTPGKNQKH  213
            DP+Y EK+A I  AL      +PVFYEDEVDI+LNPKIGADW +KGQQKRI TPG+NQKH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YFAGCLNVQTGKVTYADGLNKNSHLFINVLEELERQYCHAETLTLILDNYSIHKSRRVRD  273
            Y++G +N  TG+V Y  G +KNS LFIN+LE L + Y +AET+TLILDNY IHKSR+V D
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLACHPKFNLLFLPVYSPWLNKIERLWQSLHETVTRNHGCQYMWQLLEKVKTFLN-SCPY  332
            WL  +PKF+LLFLP YSPWLNKIE LW SLHET+TRNH C+YMWQLL KVK F+  + P+
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  333  RNSRE  337
              S+ 
Sbjct  301  PGSQA  305

139) ISPlu10F in NC_005126


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  285 bits (1067),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 191/305 (63%), Positives = 239/305 (79%), Gaps = 1/305 (0%)

Query  34   ILMLHRGESVSLVAKTLCASRSSVYRWINWLTLYGLEGLKSLPVGRPAVWNliplyplls  93
            +LMLHRG++VS  A+TLCA+RSSV RWINW+TL G EGL+SLP  RP  W +  + + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   fllqyspqqlGCLRSRWSLEFFiikinellniklsisTFYRYLHKMGIVWRRAAPTLKLP  153
            +L+Q +PQ++G LRSRWS  ++ IKI++L++I +SIST YR L + GIVWRRAAPTLK+ 
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPEYHEKMAKITEALSTCSEKHPVFYEDEVDIELNPKIGADWYLKGQQKRIVTPGKNQKH  213
            DP+Y EK+A I  AL      +PVFYEDEVDI+LNPKIGADW +KGQQKRI TPG+NQKH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YFAGCLNVQTGKVTYADGLNKNSHLFINVLEELERQYCHAETLTLILDNYSIHKSRRVRD  273
            Y++G +N  TG+V Y  G +KNS LFIN+LE L + Y +AET+TLILDNY IHKSR+V D
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLACHPKFNLLFLPVYSPWLNKIERLWQSLHETVTRNHGCQYMWQLLEKVKTFLN-SCPY  332
            WL  +PKF+LLFLP YSPWLNKIE LW SLHET+TRNH C+YMWQLL KVK F+  + P+
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  333  RNSRE  337
              S+ 
Sbjct  301  PGSQA  305

140) ISPlu10E in NC_005126


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  285 bits (1067),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 191/305 (63%), Positives = 239/305 (79%), Gaps = 1/305 (0%)

Query  34   ILMLHRGESVSLVAKTLCASRSSVYRWINWLTLYGLEGLKSLPVGRPAVWNliplyplls  93
            +LMLHRG++VS  A+TLCA+RSSV RWINW+TL G EGL+SLP  RP  W +  + + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   fllqyspqqlGCLRSRWSLEFFiikinellniklsisTFYRYLHKMGIVWRRAAPTLKLP  153
            +L+Q +PQ++G LRSRWS  ++ IKI++L++I +SIST YR L + GIVWRRAAPTLK+ 
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPEYHEKMAKITEALSTCSEKHPVFYEDEVDIELNPKIGADWYLKGQQKRIVTPGKNQKH  213
            DP+Y EK+A I  AL      +PVFYEDEVDI+LNPKIGADW +KGQQKRI TPG+NQKH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YFAGCLNVQTGKVTYADGLNKNSQLFINVLEELERQYCHAETLTLILDNYSIHKSRRVRD  273
            Y++G +N  TG+V Y  G +KNS LFIN+LE L + Y +AET+TLILDNY IHKSR+V D
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLACHPKFNLLFLPVYSPWLNKIERLWQSLHETVTRNHGCQYMWQLLEKVKTFLN-SCPY  332
            WL  +PKF+LLFLP YSPWLNKIE LW SLHET+TRNH C+YMWQLL KVK F+  + P+
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  333  RNSRE  337
              S+ 
Sbjct  301  PGSQA  305

141) ISPlu10D in NC_005126


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  285 bits (1067),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 191/305 (63%), Positives = 239/305 (79%), Gaps = 1/305 (0%)

Query  34   ILMLHRGESVSLVAKTLCASRSSVYRWINWLTLYGLEGLKSLPVGRPAVWNliplyplls  93
            +LMLHRG++VS  A+TLCA+RSSV RWINW+TL G EGL+SLP  RP  W +  + + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   fllqyspqqlGCLRSRWSLEFFiikinellniklsisTFYRYLHKMGIVWRRAAPTLKLP  153
            +L+Q +PQ++G LRSRWS  ++ IKI++L++I +SIST YR L + GIVWRRAAPTLK+ 
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPEYHEKMAKITEALSTCSEKHPVFYEDEVDIELNPKIGADWYLKGQQKRIVTPGKNQKH  213
            DP+Y EK+A I  AL      +PVFYEDEVDI+LNPKIGADW +KGQQKRI TPG+NQKH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YFAGCLNVQTGKVTYADGLNKNSQLFINVLEELERQYCHAETLTLILDNYSIHKSRRVRD  273
            Y++G +N  TG+V Y  G +KNS LFIN+LE L + Y +AET+TLILDNY IHKSR+V D
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLACHPKFNLLFLPVYSPWLNKIERLWQSLHETVTRNHGCQYMWQLLEKVKTFLN-SCPY  332
            WL  +PKF+LLFLP YSPWLNKIE LW SLHET+TRNH C+YMWQLL KVK F+  + P+
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  333  RNSRE  337
              S+ 
Sbjct  301  PGSQA  305

142) ISPlu10C in NC_005126


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  285 bits (1067),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 191/305 (63%), Positives = 239/305 (79%), Gaps = 1/305 (0%)

Query  34   ILMLHRGESVSLVAKTLCASRSSVYRWINWLTLYGLEGLKSLPVGRPAVWNliplyplls  93
            +LMLHRG++VS  A+TLCA+RSSV RWINW+TL G EGL+SLP  RP  W +  + + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   fllqyspqqlGCLRSRWSLEFFiikinellniklsisTFYRYLHKMGIVWRRAAPTLKLP  153
            +L+Q +PQ++G LRSRWS  ++ IKI++L++I +SIST YR L + GIVWRRAAPTLK+ 
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPEYHEKMAKITEALSTCSEKHPVFYEDEVDIELNPKIGADWYLKGQQKRIVTPGKNQKH  213
            DP+Y EK+A I  AL      +PVFYEDEVDI+LNPKIGADW +KGQQKRI TPG+NQKH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YFAGCLNVQTGKVTYADGLNKNSQLFINVLEELERQYCHAETLTLILDNYSIHKSRRVRD  273
            Y++G +N  TG+V Y  G +KNS LFIN+LE L + Y +AET+TLILDNY IHKSR+V D
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLACHPKFNLLFLPVYSPWLNKIERLWQSLHETVTRNHGCQYMWQLLEKVKTFLN-SCPY  332
            WL  +PKF+LLFLP YSPWLNKIE LW SLHET+TRNH C+YMWQLL KVK F+  + P+
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  333  RNSRE  337
              S+ 
Sbjct  301  PGSQA  305

143) ISPlu10A in NC_005126


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  285 bits (1067),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 191/305 (63%), Positives = 239/305 (79%), Gaps = 1/305 (0%)

Query  34   ILMLHRGESVSLVAKTLCASRSSVYRWINWLTLYGLEGLKSLPVGRPAVWNliplyplls  93
            +LMLHRG++VS  A+TLCA+RSSV RWINW+TL G EGL+SLP  RP  W +  + + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   fllqyspqqlGCLRSRWSLEFFiikinellniklsisTFYRYLHKMGIVWRRAAPTLKLP  153
            +L+Q +PQ++G LRSRWS  ++ IKI++L++I +SIST YR L + GIVWRRAAPTLK+ 
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPEYHEKMAKITEALSTCSEKHPVFYEDEVDIELNPKIGADWYLKGQQKRIVTPGKNQKH  213
            DP+Y EK+A I  AL      +PVFYEDEVDI+LNPKIGADW +KGQQKRI TPG+NQKH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YFAGCLNVQTGKVTYADGLNKNSQLFINVLEELERQYCHAETLTLILDNYSIHKSRRVRD  273
            Y++G +N  TG+V Y  G +KNS LFIN+LE L + Y +AET+TLILDNY IHKSR+V D
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLACHPKFNLLFLPVYSPWLNKIERLWQSLHETVTRNHGCQYMWQLLEKVKTFLN-SCPY  332
            WL  +PKF+LLFLP YSPWLNKIE LW SLHET+TRNH C+YMWQLL KVK F+  + P+
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  333  RNSRE  337
              S+ 
Sbjct  301  PGSQA  305

144) ISPlu10B in NC_005126


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  283 bits (1058),  Expect = 1e-77, Method: Compositional matrix adjust.
 Identities = 189/295 (65%), Positives = 234/295 (80%), Gaps = 0/295 (0%)

Query  34   ILMLHRGESVSLVAKTLCASRSSVYRWINWLTLYGLEGLKSLPVGRPAVWNliplyplls  93
            +LMLHRG++VS  A+TLCA+RSSV RWINW+TL G EGL+SLP  RP  W +  + + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   fllqyspqqlGCLRSRWSLEFFiikinellniklsisTFYRYLHKMGIVWRRAAPTLKLP  153
            +L+Q +PQ++G LRSRWS  ++ IKI++L++I +SIST YR L + GIVWRRAAPTLK+ 
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPEYHEKMAKITEALSTCSEKHPVFYEDEVDIELNPKIGADWYLKGQQKRIVTPGKNQKH  213
            DP+Y EK+A I  AL      +PVFYEDEVDI+LNPKIGADW +KGQQKRI TPG+NQKH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YFAGCLNVQTGKVTYADGLNKNSHLFINVLEELERQYCHAETLTLILDNYSIHKSRRVRD  273
            Y++G +N  TG+V Y  G +KNS LFIN+LE L + Y +AET+TLILDNY IHKSR+V D
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLACHPKFNLLFLPVYSPWLNKIERLWQSLHETVTRNHGCQYMWQLLEKVKTFLN  328
            WL  +PKF+LLFLP YSPWLNKIE LW SLHET+TRNH C+YMWQLL KVK F+ 
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMA  295

145) XNC1_0841 in NC_014228


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  275 bits (1030),  Expect = 1e-75, Method: Compositional matrix adjust.
 Identities = 163/277 (59%), Positives = 209/277 (76%), Gaps = 0/277 (0%)

Query  2    TVTKTAKILHAARSSVNRWVRWFRLYGLEGLKSFPAGRPAVWDLTPLHNIVFFLLQQSPQ  61
            TV+ TA+ L AARSSV RW+ WF L G EGL+S+P+ RP  W +  + + +++L+QQ+PQ
Sbjct  9    TVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLILLMQQPPQ  68

Query  62   KLGYLRSRWSLELMCKTLNELFNLSLTSSTLYRYFVQVGIVWRRAAPTVKQPDPEYDEKM  121
             +G LRSRWS  L+   +++LF++S++ ST+YR + Q GIVWRRAAPT+K  DP+Y EK+
Sbjct  69   HFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFKDPHYAEKV  128

Query  122  ANITEAEANMSERHPVFYEDEVDIDLNPKIGADWCFKGQQKRIVTPGKNEKYFLAGCLNA  181
            A I  A  +    +PVFYEDEVDIDLNPKIGADWC KGQQKRI TPG+N+K +L+G +NA
Sbjct  129  AAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKHYLSGTVNA  188

Query  182  QTKEVVYVKGEKKNSDLFIKMLDELNFRHPQAETITLILDNDCIHKSHKVKNWLAQHGRF  241
             T  V YV G  KNS LFI+ML+ L     +AETITLILDN  IHKS+KV +WL ++ +F
Sbjct  189  MTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVEDWLQENPKF  248

Query  242  TLLFLPVYSPWLNKIARLWQSLHETVTRNHCCQFMWQ  278
             LLFLP YSPWLNKI  LW SLHET+TRNH C++MWQ
Sbjct  249  KLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQ  285

146) XNC1_1608 in NC_014228


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  273 bits (1022),  Expect = 7e-75, Method: Compositional matrix adjust.
 Identities = 167/298 (57%), Positives = 223/298 (75%), Gaps = 0/298 (0%)

Query  34   ILLLYQGKSVSLVAEELCTAPSSVWRWIKNFRTYGRIGLENKPAGRRQRWNFTSILPLVF  93
            +L+L +G +VS  A  LC+A SSV RWI+ F   G  GL++ P+ R ++W    I++ ++
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   YLLELSPQQLGYIRSRWSLDLFIKQIRKFANITLSISTLYRFLCKNKIVWRRAAPTLKQP  153
             L++ +PQ++G +RSRWS  L+  +I+++ +I++SIST+YR LC+  IVWRRAAPTLK  
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPEYEEKMARINQALLQASKEKPVFYEDEVDIHFNPKIGSDWYFKGQQKRIITPGQNQKY  213
            DP+Y EK+A I+ AL +    +PVFYEDEVDI++NPKIG+DW  KGQQKRI TPGQNQK 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGCLNAQTREIFYTGYGRKNSQLFINMLEELKRYHPNAKTLTIILDNYKIHSSRLVEA  273
            YL+G +NA T  + Y + + KNS LFINMLE L++    A T+T+ILDNY IH SR VE 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLEQNPTVKLLFLPVYSPWLNKIERLWQSLHETVTWNHHCQYMWQLIKKVKIFLNAAS  331
            WL++NP  KLLFLP YSPWLNKIE LW SLHET+T+NH+C+YMWQL+ KVK F+  AS
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVAS  298

147) GU3_07955 in NC_016745


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  272 bits (1016),  Expect = 2e-74, Method: Compositional matrix adjust.
 Identities = 164/285 (58%), Positives = 219/285 (77%), Gaps = 0/285 (0%)

Query  52   AARSTLGRWLNWYHEGGLEALRSQRPGRPPSLPIRHIIRVLQVLIQFSPQDLGYQRSRWS  111
            AARS++GRW+NW+   G E+L+S  P RP   P+ +II  L +L+Q +PQ++G  RSRWS
Sbjct  19   AARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLILLMQQPPQHFGWLRSRWS  78

Query  112  TELFAIEVNRLLSLNMAASTLRRWLPREGIVWRRVVPTLRIRDPDYDVKVEQVKQALADC  171
            T L++I ++ L+S++++ ST+ R L + GIVWRR  PTL+++DP+Y  KV  ++ AL   
Sbjct  79   TTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFKDPHYAEKVAAIQTALEKN  138

Query  172  CQDNPVLYADEVDIDLNPKLGADWTRRGQQKKVVTPGINEKHYLAGALHATTGQVTYVAG  231
               NPV+Y DEVDIDLNPK+GADW  +GQQK++ TPG N+KHYL+G+++A TG+V YV+G
Sbjct  139  DVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKHYLSGTVNAMTGRVDYVSG  198

Query  232  YKKNSVLFISLLETLrrryrrarNITLILDNYVIHKSRLVQSWLADNPKFILIFQPVYSP  291
              KNS+LFI++LE LR+ YRRA  ITLILDNYVIHKSR V+ WL +NPKF L+F P YSP
Sbjct  199  ASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVEDWLQENPKFKLLFLPTYSP  258

Query  292  WINKIELLWHKLHETVTRNHQCHSMVSLLKRVRHFMDTVSPFPGS  336
            W+NKIELLW  LHET+TRNHQC+ M  LL +V++FM   SPFPGS
Sbjct  259  WLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPFPGS  303

148) GU3_10535 in NC_016745


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  272 bits (1016),  Expect = 2e-74, Method: Compositional matrix adjust.
 Identities = 164/285 (58%), Positives = 219/285 (77%), Gaps = 0/285 (0%)

Query  52   AARSTLGRWLNWYHEGGLEALRSQRPGRPPSLPIRHIIRVLQVLIQFSPQDLGYQRSRWS  111
            AARS++GRW+NW+   G E+L+S  P RP   P+ +II  L +L+Q +PQ++G  RSRWS
Sbjct  19   AARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLILLMQQPPQHFGWLRSRWS  78

Query  112  TELFAIEVNRLLSLNMAASTLRRWLPREGIVWRRVVPTLRIRDPDYDVKVEQVKQALADC  171
            T L++I ++ L+S++++ ST+ R L + GIVWRR  PTL+++DP+Y  KV  ++ AL   
Sbjct  79   TTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFKDPHYAEKVAAIQTALEKN  138

Query  172  CQDNPVLYADEVDIDLNPKLGADWTRRGQQKKVVTPGINEKHYLAGALHATTGQVTYVAG  231
               NPV+Y DEVDIDLNPK+GADW  +GQQK++ TPG N+KHYL+G+++A TG+V YV+G
Sbjct  139  DVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKHYLSGTVNAMTGRVDYVSG  198

Query  232  YKKNSVLFISLLETLrrryrrarNITLILDNYVIHKSRLVQSWLADNPKFILIFQPVYSP  291
              KNS+LFI++LE LR+ YRRA  ITLILDNYVIHKSR V+ WL +NPKF L+F P YSP
Sbjct  199  ASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVEDWLQENPKFKLLFLPTYSP  258

Query  292  WINKIELLWHKLHETVTRNHQCHSMVSLLKRVRHFMDTVSPFPGS  336
            W+NKIELLW  LHET+TRNHQC+ M  LL +V++FM   SPFPGS
Sbjct  259  WLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPFPGS  303

149) GU3_07330 in NC_016745


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  271 bits (1013),  Expect = 4e-74, Method: Compositional matrix adjust.
 Identities = 168/303 (56%), Positives = 226/303 (75%), Gaps = 0/303 (0%)

Query  34   ILLRYEGCTLKKIHRLTGAARSTLGRWLNWYHEGGLEALRTQRPGRPPSLPIRHIIRVLQ  93
            +L+   G T+    R   AARS++GRW+NW+   G E+L++  P RP   P+ +II  L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   VLIQFSPQDLGYQRSRWSTELFAIEVNRLLSLNMAASTLRRWLPREGIVWRRVVPTLRIK  153
            +L+Q +PQ++G  RSRWST L++I ++ L+S++++ ST+ R L + GIVWRR  PTL++K
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPDYDVKVEQVKQALADCCQDNPVLYADEVDIDLNPKLGADWTRRGQQKKVVTPGINEKH  213
            DP+Y  KV  ++ AL      NPV+Y DEVDIDLNPK+GADW  +GQQK++ TPG N+KH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGALHATTGQVTYVAGYKKNSVLFISLLETLrrryrrarNITLILDNYVIHKSRLVQS  273
            YL+G+++A TG+V YV+G  KNS+LFI++LE LR+ YRRA  ITLILDNYVIHKSR V+ 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLADNPKFILIFQPVYSPWINKIELLWHKLHETVTRNHQCHSMVSLLKRVRHFMDTFSPF  333
            WL +NPKF L+F P YSPW+NKIELLW  LHET+TRNHQC+ M  LL +V++FM   SPF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  334  PGS  336
            PGS
Sbjct  301  PGS  303

150) XNC1_0714 in NC_014228


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  269 bits (1007),  Expect = 1e-73, Method: Compositional matrix adjust.
 Identities = 165/298 (56%), Positives = 220/298 (74%), Gaps = 0/298 (0%)

Query  34   ILLLYQGKLVSLVAEELCTAPSSVWRWIKNFRTYGRIGLENKPAGRRQRWNFTSILPLVF  93
            +L+L +G  VS  A  LC+A SSV RWI+ F   G  GL++ P+ R ++W    I++ ++
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   YLLELSPQQLGYIRYRWSLDLFIKQIRKFANITLSISTLYRFLCKNRIVWRRAAPTLKQP  153
             L++ +PQ++G +R RWS  L+  +I+++ +I++SIST+YR LC+  IVWRRAAPTLK  
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPEYEEKMARINQALLQASKEKPVFYEDEVDIHFNPKIGSDWYFKGQQKRIITPGQNQKY  213
            DP+Y EK+A I+ AL +    +PVFYEDEVDI++NPKIG+DW  KGQQKRI TPGQNQK 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGCLNAQTREIFYTGYGRKNSQLFINMLEELKRYHPNAKTLTIILDNYKIHSSRLVEA  273
            YL+G +NA T  + Y + + KNS LFINMLE L++    A T+T+ILDNY IH SR VE 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  274  WLEQNPTVKLLFLPVYSPWLNKIERLWQSLHETVTWNHHCQYMWQLIKKVKIFLNADS  331
            WL++NP  KLLFLP YSPWLNKIE LW SLHET+T+NH+C+YMWQL+ KVK F+   S
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVAS  298

151) P12B_c1376 in NC_017663


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  266 bits (995),  Expect = 9e-73, Method: Compositional matrix adjust.
 Identities = 165/303 (55%), Positives = 233/303 (77%), Gaps = 0/303 (0%)

Query  33   ILLLADGHSVSAVSRLTAAARSSINRWVNWYTLFGLEGLESEPRGRKPVLPFAHISGllq  92
            +L+L  G++VS  +R   AARSS+ RW+NW+TL+G EGL+S P  R    P  +I + L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  93   lliqlspqelGYQRSRWSTELMALELKRSWRLTLHASTIRRWLPRLGIVWRRAAPTLHIR  152
            LL+Q +PQ++G  RSRWST L+++ +K    +++  ST+ R L + GIVWRRAAPTL ++
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  153  DPHKEQKMAAINEALGRCSADHPVFYEDEVDIHLNPKLGADWMMRGKQKKVATPGQNRKH  212
            DPH  +K+AAI+ AL +    +PVFYEDEVDI+LNPK+GADW M+G+QK++ATPGQN+KH
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  213  YLAGALHAGTGNVTYVASDSKDTDLFLSLLQTLKRTYRRAKSITLILDNYIIHKSKKAQR  272
            YL+G+++A TG V YV++ SK++ LF+++L+ L++TYRRA +ITLILDNY+IHKS+K + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  273  WLAKNPKFIVLFQPVYSPWVNQIERLWHALHETITRNHQCCTLGELLRRVFYFLDHAAPF  332
            WL  NPKF +LF P YSPW+N+IE LW +LHET+TRNHQC  + +LL +V  F+  A+PF
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASPF  300

Query  333  PGN  335
            PG+
Sbjct  301  PGS  303

152) Tola_3072 in NC_012691


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  262 bits (981),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 167/302 (56%), Positives = 227/302 (76%), Gaps = 1/302 (0%)

Query  32   ILMLHQGQTVSMVHQLTAAARSSIQRWLSWYQECGISGLESKQRGRFCSLPYqqirlile  91
            +LMLH+G+TVS   +   AARSS+ RW++W+   G  GL+S    R    P +QI   L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  92   lliqFSPEDFGYQRSRWSSELFASLIHRLCPELNIAASTIRRWLPKMGIVWRRAAPTLHI  151
            LL+Q +P++FG  RSRWS+ L++  I  L + ++I+ ST+ R L + GIVWRRAAPTL +
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFS-ISISISTVYRCLCQAGIVWRRAAPTLKF  119

Query  152  RDPHRDEKMALINNALQSHSINEPVFYVDEADIDLNPKIGADWMRRHQQKRIPTPGKNEK  211
            +DPH  EK+A I+ AL+ + + +PVFY DE DIDLNPKIGADW  + QQKRI+TPG+N+K
Sbjct  120  KDPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQK  179

Query  212  HYVAGALNSQTGKVIYTTGLSKDSDLFIQLLEKLKRHYRRAKKIILVLDNYVIHKSQKTQ  271
            HY++G++N+ TG+V Y +G SK+S LFI++LEKL++ YRRA  I L+LDNYVIHKS+K +
Sbjct  180  HYLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVE  239

Query  272  VWLKNNPKFELLFQPVYSPWVNRIELLWRSMHEMVTRNHRCRAMWELLQKVKYFLDHVSP  331
             WL++NPKF LLF P YSPW+N+IELLW S+HE +TRNH+CR MW+LL KVK F+   SP
Sbjct  240  DWLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASP  299

Query  332  FA  333
            F+
Sbjct  300  FP  301

153) Tola_1058 in NC_012691


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  262 bits (978),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 166/302 (55%), Positives = 227/302 (76%), Gaps = 1/302 (0%)

Query  32   ILMLHQGQTVSMVHQLTAAARSSIQRWLSWYQECGISGLESKQRGRFCSLPYqqirlile  91
            +LMLH+G+TVS   +   AARSS+ RW++W+   G  GL+S    R    P +QI   L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  92   lliqFSPEDFGYQRSRWSSELFASLIHRMCPELNIAASTIRRWLPKMGIVWRRAAPTLHI  151
            LL+Q +P++FG  RSRWS+ L++  I  + + ++I+ ST+ R L + GIVWRRAAPTL +
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFS-ISISISTVYRCLCQAGIVWRRAAPTLKF  119

Query  152  RDPHRDEKMALINNALQSHSINEPVFYVDEADIDLNPKIGADWMRRHQQKRIPTPGKNEK  211
            +DPH  EK+A I+ AL+ + + +PVFY DE DIDLNPKIGADW  + QQKRI+TPG+N+K
Sbjct  120  KDPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQK  179

Query  212  HYVAGALNSQTGKVIYTTGLSKDSDLFIQLLEKLKRHYRRAKKIILVLDNYVIHKSQKTQ  271
            HY++G++N+ TG+V Y +G SK+S LFI++LEKL++ YRRA  I L+LDNYVIHKS+K +
Sbjct  180  HYLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVE  239

Query  272  VWLKNNPKFELLFQPVYSPWVNRIELLWRSMHEMVTRNHRCRAMWELLRKVKYFLDHVSP  331
             WL++NPKF LLF P YSPW+N+IELLW S+HE +TRNH+CR MW+LL KVK F+   SP
Sbjct  240  DWLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASP  299

Query  332  FA  333
            F+
Sbjct  300  FP  301

154) Tola_1550 in NC_012691


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  262 bits (978),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 166/302 (55%), Positives = 227/302 (76%), Gaps = 1/302 (0%)

Query  32   ILMLHQGQTVSMVHQLTAAARSSIQRWLSWYQECGISGLESKQRGRFCSLPYqqirlile  91
            +LMLH+G+TVS   +   AARSS+ RW++W+   G  GL+S    R    P +QI   L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  92   lliqFSPEDFGYQRSRWSSELFASLIHRMCPELNIAASTIRRWLPKMGIVWRRAAPTLHI  151
            LL+Q +P++FG  RSRWS+ L++  I  + + ++I+ ST+ R L + GIVWRRAAPTL +
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFS-ISISISTVYRCLCQAGIVWRRAAPTLKF  119

Query  152  RDPHRDEKMALINNALQSHSINEPVFYVDEADIDLNPKIGADWMRRHQQKRIPTPGKNEK  211
            +DPH  EK+A I+ AL+ + + +PVFY DE DIDLNPKIGADW  + QQKRI+TPG+N+K
Sbjct  120  KDPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQK  179

Query  212  HYVAGALNSQTGKVIYTTGLSKDSDLFIQLLEKLKRHYRRAKKIILVLDNYVIHKSQKTQ  271
            HY++G++N+ TG+V Y +G SK+S LFI++LEKL++ YRRA  I L+LDNYVIHKS+K +
Sbjct  180  HYLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVE  239

Query  272  VWLKNNPKFELLFQPVYSPWVNRIELLWRSMHEMVTRNHRCRAMWELLRKVKYFLDHVSP  331
             WL++NPKF LLF P YSPW+N+IELLW S+HE +TRNH+CR MW+LL KVK F+   SP
Sbjct  240  DWLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASP  299

Query  332  FA  333
            F+
Sbjct  300  FP  301

155) Tola_1884 in NC_012691


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  262 bits (978),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 166/302 (55%), Positives = 227/302 (76%), Gaps = 1/302 (0%)

Query  32   ILMLHQGQTVSMVHQLTAAARSSIQRWLSWYQECGISGLESKQRGRFCSLPYqqirlile  91
            +LMLH+G+TVS   +   AARSS+ RW++W+   G  GL+S    R    P +QI   L 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  92   lliqFSPEDFGYQRSRWSSELFASLIHRMCPELNIAASTIRRWLPKMGIVWRRAAPTLHI  151
            LL+Q +P++FG  RSRWS+ L++  I  + + ++I+ ST+ R L + GIVWRRAAPTL +
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFS-ISISISTVYRCLCQAGIVWRRAAPTLKF  119

Query  152  RDPHRDEKMALINNALQSHSINEPVFYVDEADIDLNPKIGADWMRRHQQKRIPTPGKNEK  211
            +DPH  EK+A I+ AL+ + + +PVFY DE DIDLNPKIGADW  + QQKRI+TPG+N+K
Sbjct  120  KDPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQK  179

Query  212  HYVAGALNSQTGKVIYTTGLSKDSDLFIQLLEKLKRHYRRAKKIILVLDNYVIHKSQKTQ  271
            HY++G++N+ TG+V Y +G SK+S LFI++LEKL++ YRRA  I L+LDNYVIHKS+K +
Sbjct  180  HYLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVE  239

Query  272  VWLKNNPKFELLFQPVYSPWVNRIELLWRSMHEMVTRNHRCRAMWELLRKVKYFLDHVSP  331
             WL++NPKF LLF P YSPW+N+IELLW S+HE +TRNH+CR MW+LL KVK F+   SP
Sbjct  240  DWLQENPKFKLLFLPTYSPWLNKIELLWLSLHETLTRNHQCRYMWQLLIKVKQFMAVASP  299

Query  332  FA  333
            F+
Sbjct  300  FP  301

156) Z4330 in NC_002655


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  251 bits (939),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 148/266 (56%), Positives = 201/266 (76%), Gaps = 4/266 (1%)

Query  20   MLMLHRSARVSDVARTLCCARSSVRRWINWFTLSSVEGLKSLPAGRSRRWPFEHICTLFR  79
            MLMLHR+  VS+ ARTLC ARSSV RWINWFTL + EGL+SLP+ R+R+WP E+I + + 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  80   ELIKHSPGYFGYQRSRWSTELLAIKINEITECQLHAGTVRRWLPLVGLVWRRAAPTLRTR  139
             L++++P  FG  RSRWST LL+IKI+++    +  +TV R L   G+VWRRAAPTL+ +
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  140  NPH----KAAIHKALDECSAEHPVFYEDEVYIYLNPKTGADWQLRRQQKHVVTPGQNEKY  195
            +PH     AAI+ AL+     +PVFYEDEV I LNPK GADW ++ QQK++ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  196  YLAGALHSGTGKVSYVGGNSKSSALFISLLKHLKLTYRRDKPITLIVDNYIIHKSRETQR  255
            YL+G++++ TG+V YV+G SK+S LFI++L  L+ TYRR   ITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  256  WLKENPKFRVIYQPVYSPWVNHVERL  281
            WL+ENPKF++++ P YSPW+N +E L
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELL  266

157) ECSP_3955 in NC_013008


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  251 bits (939),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 148/266 (56%), Positives = 201/266 (76%), Gaps = 4/266 (1%)

Query  20   MLMLHRSARVSDVARTLCCARSSVRRWINWFTLSSVEGLKSLPAGRSRRWPFEHICTLFR  79
            MLMLHR+  VS+ ARTLC ARSSV RWINWFTL + EGL+SLP+ R+R+WP E+I + + 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  80   ELIKHSPGYFGYQRSRWSTELLAIKINEITECQLHAGTVRRWLPLVGLVWRRAAPTLRTR  139
             L++++P  FG  RSRWST LL+IKI+++    +  +TV R L   G+VWRRAAPTL+ +
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  140  NPH----KAAIHKALDECSAEHPVFYEDEVYIYLNPKTGADWQLRRQQKHVVTPGQNEKY  195
            +PH     AAI+ AL+     +PVFYEDEV I LNPK GADW ++ QQK++ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  196  YLAGALHSGTGKVSYVGGNSKSSALFISLLKHLKLTYRRDKPITLIVDNYIIHKSRETQR  255
            YL+G++++ TG+V YV+G SK+S LFI++L  L+ TYRR   ITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  256  WLKENPKFRVIYQPVYSPWVNHVERL  281
            WL+ENPKF++++ P YSPW+N +E L
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELL  266

158) ECO55CA74_17360 in NC_017656


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  251 bits (939),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 148/266 (56%), Positives = 201/266 (76%), Gaps = 4/266 (1%)

Query  20   MLMLHRSARVSDVARTLCCARSSVRRWINWFTLSSVEGLKSLPAGRSRRWPFEHICTLFR  79
            MLMLHR+  VS+ ARTLC ARSSV RWINWFTL + EGL+SLP+ R+R+WP E+I + + 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  80   ELIKHSPGYFGYQRSRWSTELLAIKINEITECQLHAGTVRRWLPLVGLVWRRAAPTLRTR  139
             L++++P  FG  RSRWST LL+IKI+++    +  +TV R L   G+VWRRAAPTL+ +
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  140  NPH----KAAIHKALDECSAEHPVFYEDEVYIYLNPKTGADWQLRRQQKHVVTPGQNEKY  195
            +PH     AAI+ AL+     +PVFYEDEV I LNPK GADW ++ QQK++ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  196  YLAGALHSGTGKVSYVGGNSKSSALFISLLKHLKLTYRRDKPITLIVDNYIIHKSRETQR  255
            YL+G++++ TG+V YV+G SK+S LFI++L  L+ TYRR   ITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  256  WLKENPKFRVIYQPVYSPWVNHVERL  281
            WL+ENPKF++++ P YSPW+N +E L
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELL  266

159) ECs3859 in NC_002695


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  251 bits (936),  Expect = 3e-68, Method: Compositional matrix adjust.
 Identities = 148/266 (56%), Positives = 201/266 (76%), Gaps = 4/266 (1%)

Query  1    MLMLHRSARVSDVARTLCCARSSVRRWINWFTLSSVEGLKSLPAGRSRRWPFEHICTLFR  60
            MLMLHR+  VS+ ARTLC ARSSV RWINWFTL + EGL+SLP+ R+R+WP E+I + + 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  61   ELIKHSPGYFGYQRSRWSTELLAIKINEITECQLHAGTVRRWLPLVGLVWRRAAPTLRTR  120
             L++++P  FG  RSRWST LL+IKI+++    +  +TV R L   G+VWRRAAPTL+ +
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  121  NPH----KAAIHKALDECSAEHPVFYEDEVYIYLNPKTGADWQLRRQQKHVVTPGQNEKY  176
            +PH     AAI+ AL+     +PVFYEDEV I LNPK GADW ++ QQK++ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  177  YLAGALHSGTGKVSYVGGNSKSSALFISLLKHLKLTYRRDKPITLIVDNYIIHKSRETQR  236
            YL+G++++ TG+V YV+G SK+S LFI++L  L+ TYRR   ITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  237  WLKENPKFRVIYQPVYSPWVNHVERL  262
            WL+ENPKF++++ P YSPW+N +E L
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELL  266

160) CDCO157_3606 in NC_017906


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  251 bits (936),  Expect = 3e-68, Method: Compositional matrix adjust.
 Identities = 148/266 (56%), Positives = 201/266 (76%), Gaps = 4/266 (1%)

Query  1    MLMLHRSARVSDVARTLCCARSSVRRWINWFTLSSVEGLKSLPAGRSRRWPFEHICTLFR  60
            MLMLHR+  VS+ ARTLC ARSSV RWINWFTL + EGL+SLP+ R+R+WP E+I + + 
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  61   ELIKHSPGYFGYQRSRWSTELLAIKINEITECQLHAGTVRRWLPLVGLVWRRAAPTLRTR  120
             L++++P  FG  RSRWST LL+IKI+++    +  +TV R L   G+VWRRAAPTL+ +
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  121  NPH----KAAIHKALDECSAEHPVFYEDEVYIYLNPKTGADWQLRRQQKHVVTPGQNEKY  176
            +PH     AAI+ AL+     +PVFYEDEV I LNPK GADW ++ QQK++ TPGQN+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  177  YLAGALHSGTGKVSYVGGNSKSSALFISLLKHLKLTYRRDKPITLIVDNYIIHKSRETQR  236
            YL+G++++ TG+V YV+G SK+S LFI++L  L+ TYRR   ITLI+DNY+IHKSR  + 
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240

Query  237  WLKENPKFRVIYQPVYSPWVNHVERL  262
            WL+ENPKF++++ P YSPW+N +E L
Sbjct  241  WLQENPKFKLLFLPTYSPWLNKIELL  266

161) XNC1_4407 in NC_014228


> AJ627388|45|G44|49658890|CAF28516.1|Yersinia_pseudotuberculosis_32777|+|41489..42418|api42|-|DNA 
binding protein
Length=309

 Score =  223 bits (830),  Expect = 7e-60, Method: Compositional matrix adjust.
 Identities = 135/240 (57%), Positives = 179/240 (75%), Gaps = 0/240 (0%)

Query  34   LLLLNEGVTVTKVAKILHAARSSVNRWVKGFRLYGLEGLNSLPAGRPAVWDLTPLDNILF  93
            +L+L+ G TV+  A+ L AARSSV RW++ F L G EGL+SLP+ RP  W +  + + L+
Sbjct  1    MLMLHRGDTVSHTARTLCAARSSVGRWINWFTLLGSEGLQSLPPERPRQWPVEQIISTLI  60

Query  94   FLLQQSPQELGYLRSRWSLELINKTLNELFNISLTSSTLYRYFVQEDIVWRRAAPTVKQP  153
            +L+QQ+PQ++G LRSRWS  L++  +++LF+IS++ ST+YR + Q +IVWRRAAPT+K  
Sbjct  61   LLMQQPPQHFGWLRSRWSTTLLSIKIKNLFSISISISTVYRCLCQAGIVWRRAAPTLKFK  120

Query  154  DPEYNEKMAKITEAKANISERHPVFYEDEVDIDLNPKIGADWCFKGQQKRIVTPGKNEKY  213
            DP+Y EK+A I  A  +    +PVFYEDEVDIDLNPKIGADWC KGQQKRI TPG+N+K 
Sbjct  121  DPHYAEKVAAIQTALEKNDVANPVFYEDEVDIDLNPKIGADWCMKGQQKRIATPGQNQKH  180

Query  214  YLAGCLNAQTKEITYVKGEKKNSDLFIKMLDELNARHPHAETITLILDNDCIHKSHKVKN  273
            YL+G +NA T  + YV G  KNS LFI+ML+ L     +AETITLILDN  IHKS+KV +
Sbjct  181  YLSGTVNAMTGRVDYVSGASKNSILFINMLEKLRQTYRRAETITLILDNYVIHKSRKVED  240