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Homologs of espF gene of NC_013361_P1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) espF
( YP_003232171.1 )

T3SS effector EspF

NC_013361
(Escherichia coli 11368)

3e-61

100

2) espF
( YP_003501856.1 )

espF

NC_013941
(Escherichia coli CB9615)

1e-49

3) espF
( NP_290250.1 )

hypothetical protein

NC_002655
(Escherichia coli EDL933)

2e-49

4) ECs4550
( NP_312577.1 )

protein EspF

NC_002695
(Escherichia coli Sakai)

2e-49

5) espF
( YP_003080462.1 )

LEE-encoded type III effector

NC_013008
(Escherichia coli TW14359)

2e-49

6) espF
( YP_002331392.1 )

LEE-encoded effector EspF

NC_011601
(Escherichia coli E2348/69)

8e-43

7) espF
( YP_003236070.1 )

T3SS secreted effector EspF

NC_013364
(Escherichia coli 11128)

6e-39

8) CDCO157_4284
( YP_006315150.1 )

protein EspF

NC_017906
(Escherichia coli Xuzhou21)

5e-29

• Sequence Alignments

1) espF in NC_013361


> NC_013361_P1|44|G43|260858280|YP_003232171.1|Escherichia_coli_O26:H11_str._11368|+|35153..35776|espF|ECO26_5289|T3SS 
effector 
EspF
Length=207

 Score =  227 bits (847),  Expect = 3e-61, Method: Compositional matrix adjust.
 Identities = 207/207 (100%), Positives = 207/207 (100%), Gaps = 0/207 (0%)

Query  1    MLNGISQAVSTLGRHITSAASRVSSAGLSGFSVSPQAVRLNPIRAQSPFSPGTSNINART  60
            MLNGISQAVSTLGRHITSAASRVSSAGLSGFSVSPQAVRLNPIRAQSPFSPGTSNINART
Sbjct  1    MLNGISQAVSTLGRHITSAASRVSSAGLSGFSVSPQAVRLNPIRAQSPFSPGTSNINART  60

Query  61   TFNVsspatsftpsrpapppptsgqasgasRPLPPIAQALKDHLAAYEKSKSLDTsslkp  120
            TFNVSSPATSFTPSRPAPPPPTSGQASGASRPLPPIAQALKDHLAAYEKSKSLDTSSLKP
Sbjct  61   TFNVSSPATSFTPSRPAPPPPTSGQASGASRPLPPIAQALKDHLAAYEKSKSLDTSSLKP  120

Query  121  srpapppptsGLVSGSSRSLPPIAQALKDHLAAYEKSKSLDTSGLKpsrpappppTSGQA  180
            SRPAPPPPTSGLVSGSSRSLPPIAQALKDHLAAYEKSKSLDTSGLKPSRPAPPPPTSGQA
Sbjct  121  SRPAPPPPTSGLVSGSSRSLPPIAQALKDHLAAYEKSKSLDTSGLKPSRPAPPPPTSGQA  180

Query  181  SEASRPLPPIAQALKDHLAAYELSKKA  207
            SEASRPLPPIAQALKDHLAAYELSKKA
Sbjct  181  SEASRPLPPIAQALKDHLAAYELSKKA  207

2) espF in NC_013941


> NC_013361_P1|44|G43|260858280|YP_003232171.1|Escherichia_coli_O26:H11_str._11368|+|35153..35776|espF|ECO26_5289|T3SS 
effector 
EspF
Length=207

 Score =  189 bits (702),  Expect = 1e-49, Method: Compositional matrix adjust.
 Identities = 159/205 (78%), Positives = 186/205 (91%), Gaps = 0/205 (0%)

Query  1    MLNGISNAASTLGRQLVGIASRVSSAGGTGFSVAPQAVRLTPVKVHSPFSPGSSNVNART  60
            MLNGIS+A STLGR++ + ASRVSSAG +GFSV+PQAVRL P++ +SPFSPG+SN+NART
Sbjct  1    MLNGISQAVSTLGRHITSAASRVSSAGLSGFSVSPQAVRLNPIRAQSPFSPGTSNINART  60

Query  61   IFNVSSQVtsftpsrpapppptsgqasgasRPLPPIAQALKEHLAAYEKSKGPEALGFKP  120
             FNVSS  TSFTPSRPAPPPPTSGQASGASRPLPPIAQALK+HLAAYEKSK+ ++ ++KP
Sbjct  61   TFNVSSPATSFTPSRPAPPPPTSGQASGASRPLPPIAQALKDHLAAYEKSKSLDTSSLKP  120

Query  121  ARQAPPPPTSGQASGASRPLPPIAQALKEHLAAYEKSKGPEALGFKPARQAPPPPTSGQA  180
            +R APPPPTSG  SG+SR+LPPIAQALK+HLAAYEKSK+ ++ G+KP+R APPPPTSGQA
Sbjct  121  SRPAPPPPTSGLVSGSSRSLPPIAQALKDHLAAYEKSKSLDTSGLKPSRPAPPPPTSGQA  180

Query  181  SGASRPLPPIAQALKEHLAAYEKSK  205
            S ASRPLPPIAQALK+HLAAYE SK
Sbjct  181  SEASRPLPPIAQALKDHLAAYELSK  205


 Score =  132 bits (484),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 108/138 (79%), Positives = 126/138 (92%), Gaps = 0/138 (0%)

Query  117  GFKPARQAPPPPTSGQASGASRPLPPIAQALKEHLAAYEKSKGPEALGFKPARQAPPPPT  176
            +F P+R APPPPTSGQASGASRPLPPIAQALK+HLAAYEKSK+ ++ ++KP+R APPPPT
Sbjct  70   SFTPSRPAPPPPTSGQASGASRPLPPIAQALKDHLAAYEKSKSLDTSSLKPSRPAPPPPT  129

Query  177  SGQASGASRPLPPIAQALKEHLAAYEKSKGPEALGFKPARQAPPPPTSGQASGASRPLPP  236
            SG  SG+SR+LPPIAQALK+HLAAYEKSK+ ++ G+KP+R APPPPTSGQAS ASRPLPP
Sbjct  130  SGLVSGSSRSLPPIAQALKDHLAAYEKSKSLDTSGLKPSRPAPPPPTSGQASEASRPLPP  189

Query  237  IAQALKDHLAAYEQSKKG  254
            IAQALKDHLAAYE SKK+
Sbjct  190  IAQALKDHLAAYELSKKA  207

3) espF in NC_002655


> NC_013361_P1|44|G43|260858280|YP_003232171.1|Escherichia_coli_O26:H11_str._11368|+|35153..35776|espF|ECO26_5289|T3SS 
effector 
EspF
Length=207

 Score =  189 bits (700),  Expect = 2e-49, Method: Compositional matrix adjust.
 Identities = 159/205 (78%), Positives = 186/205 (91%), Gaps = 0/205 (0%)

Query  1    MLNGISNAASTLGRQLVGIASRVSSAGGTGFSVAPQAVRLTPVKVHSPFSPGSSNVNART  60
            MLNGIS+A STLGR++ + ASRVSSAG +GFSV+PQAVRL P++ +SPFSPG+SN+NART
Sbjct  1    MLNGISQAVSTLGRHITSAASRVSSAGLSGFSVSPQAVRLNPIRAQSPFSPGTSNINART  60

Query  61   IFNVSSQVtsftpsrpapppptsgqasgasRPLPPIAQALKEHLAAYEKSKGPEALGFKP  120
             FNVSS  TSFTPSRPAPPPPTSGQASGASRPLPPIAQALK+HLAAYEKSK+ ++ ++KP
Sbjct  61   TFNVSSPATSFTPSRPAPPPPTSGQASGASRPLPPIAQALKDHLAAYEKSKSLDTSSLKP  120

Query  121  ARQAPPPPTSGQASGASRPLPPIAQALKEHLAAYEKSKGPEALGFKPARQAPPPPTSGQA  180
            +R APPPPTSG  SG+SR+LPPIAQALK+HLAAYEKSK+ ++ G+KP+R APPPPTSGQA
Sbjct  121  SRPAPPPPTSGLVSGSSRSLPPIAQALKDHLAAYEKSKSLDTSGLKPSRPAPPPPTSGQA  180

Query  181  SGASRPLPPIAQALKEHLAAYEKSK  205
            S ASRPLPPIAQALK+HLAAYE SK
Sbjct  181  SEASRPLPPIAQALKDHLAAYELSK  205


 Score =  103 bits (372),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 85/124 (69%), Positives = 104/124 (84%), Gaps = 6/124 (4%)

Query  131  GQASGASRPLPPIAQALKEHLAAYEKSKGPEALGFKPARQAPPPPTSGQASGASRPLPPI  190
            GQASGASRPLPPIAQALK+HLAAYEKSK+ ++ ++KP+R APPPPTSG  SG+SR+LPPI
Sbjct  84   GQASGASRPLPPIAQALKDHLAAYEKSKSLDTSSLKPSRPAPPPPTSGLVSGSSRSLPPI  143

Query  191  AQALKEHLAAYEKSKGPEALGFKPARQApppptgpsglppl------AQALKDHLAAYEQ  244
            AQALK+HLAAYEKSK+ ++ G+KP+R APPPPT+  +  +       AQALKDHLAAYE 
Sbjct  144  AQALKDHLAAYEKSKSLDTSGLKPSRPAPPPPTSGQASEASRPLPPIAQALKDHLAAYEL  203

Query  245  SKKG  248
            SKK+
Sbjct  204  SKKA  207

4) ECs4550 in NC_002695


> NC_013361_P1|44|G43|260858280|YP_003232171.1|Escherichia_coli_O26:H11_str._11368|+|35153..35776|espF|ECO26_5289|T3SS 
effector 
EspF
Length=207

 Score =  189 bits (700),  Expect = 2e-49, Method: Compositional matrix adjust.
 Identities = 159/205 (78%), Positives = 186/205 (91%), Gaps = 0/205 (0%)

Query  1    MLNGISNAASTLGRQLVGIASRVSSAGGTGFSVAPQAVRLTPVKVHSPFSPGSSNVNART  60
            MLNGIS+A STLGR++ + ASRVSSAG +GFSV+PQAVRL P++ +SPFSPG+SN+NART
Sbjct  1    MLNGISQAVSTLGRHITSAASRVSSAGLSGFSVSPQAVRLNPIRAQSPFSPGTSNINART  60

Query  61   IFNVSSQVtsftpsrpapppptsgqasgasRPLPPIAQALKEHLAAYEKSKGPEALGFKP  120
             FNVSS  TSFTPSRPAPPPPTSGQASGASRPLPPIAQALK+HLAAYEKSK+ ++ ++KP
Sbjct  61   TFNVSSPATSFTPSRPAPPPPTSGQASGASRPLPPIAQALKDHLAAYEKSKSLDTSSLKP  120

Query  121  ARQAPPPPTSGQASGASRPLPPIAQALKEHLAAYEKSKGPEALGFKPARQAPPPPTSGQA  180
            +R APPPPTSG  SG+SR+LPPIAQALK+HLAAYEKSK+ ++ G+KP+R APPPPTSGQA
Sbjct  121  SRPAPPPPTSGLVSGSSRSLPPIAQALKDHLAAYEKSKSLDTSGLKPSRPAPPPPTSGQA  180

Query  181  SGASRPLPPIAQALKEHLAAYEKSK  205
            S ASRPLPPIAQALK+HLAAYE SK
Sbjct  181  SEASRPLPPIAQALKDHLAAYELSK  205


 Score =  103 bits (372),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 85/124 (69%), Positives = 104/124 (84%), Gaps = 6/124 (4%)

Query  131  GQASGASRPLPPIAQALKEHLAAYEKSKGPEALGFKPARQAPPPPTSGQASGASRPLPPI  190
            GQASGASRPLPPIAQALK+HLAAYEKSK+ ++ ++KP+R APPPPTSG  SG+SR+LPPI
Sbjct  84   GQASGASRPLPPIAQALKDHLAAYEKSKSLDTSSLKPSRPAPPPPTSGLVSGSSRSLPPI  143

Query  191  AQALKEHLAAYEKSKGPEALGFKPARQApppptgpsglppl------AQALKDHLAAYEQ  244
            AQALK+HLAAYEKSK+ ++ G+KP+R APPPPT+  +  +       AQALKDHLAAYE 
Sbjct  144  AQALKDHLAAYEKSKSLDTSGLKPSRPAPPPPTSGQASEASRPLPPIAQALKDHLAAYEL  203

Query  245  SKKG  248
            SKK+
Sbjct  204  SKKA  207

5) espF in NC_013008


> NC_013361_P1|44|G43|260858280|YP_003232171.1|Escherichia_coli_O26:H11_str._11368|+|35153..35776|espF|ECO26_5289|T3SS 
effector 
EspF
Length=207

 Score =  189 bits (700),  Expect = 2e-49, Method: Compositional matrix adjust.
 Identities = 159/205 (78%), Positives = 186/205 (91%), Gaps = 0/205 (0%)

Query  1    MLNGISNAASTLGRQLVGIASRVSSAGGTGFSVAPQAVRLTPVKVHSPFSPGSSNVNART  60
            MLNGIS+A STLGR++ + ASRVSSAG +GFSV+PQAVRL P++ +SPFSPG+SN+NART
Sbjct  1    MLNGISQAVSTLGRHITSAASRVSSAGLSGFSVSPQAVRLNPIRAQSPFSPGTSNINART  60

Query  61   IFNVSSQVtsftpsrpapppptsgqasgasRPLPPIAQALKEHLAAYEKSKGPEALGFKP  120
             FNVSS  TSFTPSRPAPPPPTSGQASGASRPLPPIAQALK+HLAAYEKSK+ ++ ++KP
Sbjct  61   TFNVSSPATSFTPSRPAPPPPTSGQASGASRPLPPIAQALKDHLAAYEKSKSLDTSSLKP  120

Query  121  ARQAPPPPTSGQASGASRPLPPIAQALKEHLAAYEKSKGPEALGFKPARQAPPPPTSGQA  180
            +R APPPPTSG  SG+SR+LPPIAQALK+HLAAYEKSK+ ++ G+KP+R APPPPTSGQA
Sbjct  121  SRPAPPPPTSGLVSGSSRSLPPIAQALKDHLAAYEKSKSLDTSGLKPSRPAPPPPTSGQA  180

Query  181  SGASRPLPPIAQALKEHLAAYEKSK  205
            S ASRPLPPIAQALK+HLAAYE SK
Sbjct  181  SEASRPLPPIAQALKDHLAAYELSK  205


 Score =  103 bits (372),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 85/124 (69%), Positives = 104/124 (84%), Gaps = 6/124 (4%)

Query  131  GQASGASRPLPPIAQALKEHLAAYEKSKGPEALGFKPARQAPPPPTSGQASGASRPLPPI  190
            GQASGASRPLPPIAQALK+HLAAYEKSK+ ++ ++KP+R APPPPTSG  SG+SR+LPPI
Sbjct  84   GQASGASRPLPPIAQALKDHLAAYEKSKSLDTSSLKPSRPAPPPPTSGLVSGSSRSLPPI  143

Query  191  AQALKEHLAAYEKSKGPEALGFKPARQApppptgpsglppl------AQALKDHLAAYEQ  244
            AQALK+HLAAYEKSK+ ++ G+KP+R APPPPT+  +  +       AQALKDHLAAYE 
Sbjct  144  AQALKDHLAAYEKSKSLDTSGLKPSRPAPPPPTSGQASEASRPLPPIAQALKDHLAAYEL  203

Query  245  SKKG  248
            SKK+
Sbjct  204  SKKA  207

6) espF in NC_011601


> NC_013361_P1|44|G43|260858280|YP_003232171.1|Escherichia_coli_O26:H11_str._11368|+|35153..35776|espF|ECO26_5289|T3SS 
effector 
EspF
Length=207

 Score =  166 bits (615),  Expect = 8e-43, Method: Compositional matrix adjust.
 Identities = 159/207 (77%), Positives = 185/207 (90%), Gaps = 1/207 (0%)

Query  1    MLNGISNAASTLGRQLVGIASRVSSAGGTGFSVAPQAVRLTPVRVHSPFSPGSSNVNART  60
            MLNGIS+A STLGR++ + ASRVSSAG +GFSV+PQAVRL P+R +SPFSPG+SN+NART
Sbjct  1    MLNGISQAVSTLGRHITSAASRVSSAGLSGFSVSPQAVRLNPIRAQSPFSPGTSNINART  60

Query  61   IFNVSSQVtsftpsrpapppptsgqasgasRPLPPIAQALKDHLAAYELSKASETVNFKp  120
             FNVSS  TSFTPSRPAPPPPTSGQASGASRPLPPIAQALKDHLAAYE SK+ +T ++KP
Sbjct  61   TFNVSSPATSFTPSRPAPPPPTSGQASGASRPLPPIAQALKDHLAAYEKSKSLDTSSLKP  120

Query  121  trpapppptsgqasgasRPLPPIAQALKDHLAAYELSKASETVSFKPTRQAPPPPTSGQA  180
            +RPAPPPPTSG  SG+SR+LPPIAQALKDHLAAYE SK+ +T ++KP+R APPPPTSGQA
Sbjct  121  SRPAPPPPTSGLVSGSSRSLPPIAQALKDHLAAYEKSKSLDTSGLKPSRPAPPPPTSGQA  180

Query  181  SGPG-GLPPLAQALKDHLAAYEQSKKG  206
            S ++  LPP+AQALKDHLAAYE SKK+
Sbjct  181  SEASRPLPPIAQALKDHLAAYELSKKA  207

7) espF in NC_013364


> NC_013361_P1|44|G43|260858280|YP_003232171.1|Escherichia_coli_O26:H11_str._11368|+|35153..35776|espF|ECO26_5289|T3SS 
effector 
EspF
Length=207

 Score =  153 bits (566),  Expect = 6e-39, Method: Compositional matrix adjust.
 Identities = 138/216 (64%), Positives = 169/216 (79%), Gaps = 13/216 (6%)

Query  1    MLNGISNAVSTIGLHLRGVASRVGSAGVSGFSVAPQTVRLTPVRFHSPFSPGSSNINART  60
            MLNGIS+AVST+G H+ + ASRV+SAG+SGFSV+PQ+VRL P+R +SPFSPG+SNINART
Sbjct  1    MLNGISQAVSTLGRHITSAASRVSSAGLSGFSVSPQAVRLNPIRAQSPFSPGTSNINART  60

Query  61   TFNmshmsqmsqmsrmsqmatsftptrpapppptsgqasgsagLPPIAQALKDHLAAYEL  120
            TFN+S  +     SR +  + +   +  A+ P           LPPIAQALKDHLAAYE 
Sbjct  61   TFNVSSPATSFTPSRPAPPPPTSGQASGASRP-----------LPPIAQALKDHLAAYEK  109

Query  121  SKASETVSFKPTRQAPPPPTSGQASESG-GLPPIAQALKDHLAAYELSKASETVSFKPTR  179
            SK+ +T S+KP+R APPPPTSG  S S+ +LPPIAQALKDHLAAYE SK+ +T ++KP+R
Sbjct  110  SKSLDTSSLKPSRPAPPPPTSGLVSGSSRSLPPIAQALKDHLAAYEKSKSLDTSGLKPSR  169

Query  180  QAPPPPTSGQASESG-GLPPIAQALKDHLAAYELSK  214
             APPPPTSGQASE++  LPPIAQALKDHLAAYELSK
Sbjct  170  PAPPPPTSGQASEASRPLPPIAQALKDHLAAYELSK  205


 Score = 98.9 bits (356),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 102/142 (72%), Positives = 120/142 (85%), Gaps = 3/142 (2%)

Query  123  ASETVSFKPTRQAPPPPTSGQASESG-GLPPIAQALKDHLAAYELSKASETVSFKPTRQA  181
            +S + SF P+R APPPPTSGQAS ++  LPPIAQALKDHLAAYE SK+ +T S+KP+R A
Sbjct  65   SSPATSFTPSRPAPPPPTSGQASGASRPLPPIAQALKDHLAAYEKSKSLDTSSLKPSRPA  124

Query  182  PPPPTSGQASESG-GLPPIAQALKDHLAAYELSKASETVSFKPTRQAPPPPTSGQASESG  240
            PPPPTSG  S S+ +LPPIAQALKDHLAAYE SK+ +T ++KP+R APPPPTSGQASE++
Sbjct  125  PPPPTSGLVSGSSRSLPPIAQALKDHLAAYEKSKSLDTSGLKPSRPAPPPPTSGQASEAS  184

Query  241  -GLPPIAQALKDHLAAYEQSKK  261
              LPPIAQALKDHLAAYE SKK
Sbjct  185  RPLPPIAQALKDHLAAYELSKK  206


 Score = 66.0 bits (231),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 67/96 (70%), Positives = 80/96 (84%), Gaps = 2/96 (2%)

Query  169  ASETVSFKPTRQAPPPPTSGQASESG-GLPPIAQALKDHLAAYELSKASETVSFKPTRQA  227
            +S + SF P+R APPPPTSGQAS ++  LPPIAQALKDHLAAYE SK+ +T S+KP+R A
Sbjct  65   SSPATSFTPSRPAPPPPTSGQASGASRPLPPIAQALKDHLAAYEKSKSLDTSSLKPSRPA  124

Query  228  PPPPTSGQASESG-GLPPIAQALKDHLAAYEQSKKV  262
            PPPPTSG  S S+ +LPPIAQALKDHLAAYE+SK +
Sbjct  125  PPPPTSGLVSGSSRSLPPIAQALKDHLAAYEKSKSL  160

8) CDCO157_4284 in NC_017906


> NC_013361_P1|44|G43|260858280|YP_003232171.1|Escherichia_coli_O26:H11_str._11368|+|35153..35776|espF|ECO26_5289|T3SS 
effector 
EspF
Length=207

 Score =  120 bits (440),  Expect = 5e-29, Method: Compositional matrix adjust.
 Identities = 113/158 (72%), Positives = 134/158 (85%), Gaps = 6/158 (3%)

Query  1    MLNGISNAASTLGRQLVGIASRVSSAGGTGFSVAPQAVRLTPVKVHSPFSPGSSNVNART  60
            MLNGIS+A STLGR++ + ASRVSSAG +GFSV+PQAVRL P++ +SPFSPG+SN+NART
Sbjct  1    MLNGISQAVSTLGRHITSAASRVSSAGLSGFSVSPQAVRLNPIRAQSPFSPGTSNINART  60

Query  61   IFNVSSQVtsftpsrpapppptsgqasgasRPLPPIAQALKEHLAAYEKSKGPEALGFKP  120
             FNVSS  TSFTPSRPAPPPPTSGQASGASRPLPPIAQALK+HLAAYEKSK+ ++ ++KP
Sbjct  61   TFNVSSPATSFTPSRPAPPPPTSGQASGASRPLPPIAQALKDHLAAYEKSKSLDTSSLKP  120

Query  121  ARQApppptgpsglppl------AQALKDHLAAYEQSK  152
            +R APPPPT+     +       AQALKDHLAAYE+SK
Sbjct  121  SRPAPPPPTSGLVSGSSRSLPPIAQALKDHLAAYEKSK  158


 Score = 54.5 bits (187),  Expect = 5e-09, Method: Compositional matrix adjust.
 Identities = 44/70 (63%), Positives = 55/70 (79%), Gaps = 6/70 (8%)

Query  91   RPLPPIAQALKEHLAAYEKSKGPEALGFKPARQApppptgpsglppl------AQALKDH  144
            R+LPPIAQALK+HLAAYEKSK+ ++ G+KP+R APPPPT+  +  +       AQALKDH
Sbjct  138  RSLPPIAQALKDHLAAYEKSKSLDTSGLKPSRPAPPPPTSGQASEASRPLPPIAQALKDH  197

Query  145  LAAYEQSKKG  154
            LAAYE SKK+
Sbjct  198  LAAYELSKKA  207