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Homologs of ssaU gene of NC_003197_P2

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) SE451236_12975
( YP_008265621.1 )

secretion system apparatus protein SsaU

NC_021820
(Salmonella enterica 08-1736)

3e-159

100

2) ssaU
( YP_005237292.1 )

secretion system apparatus protein SsaU

NC_016856
(Salmonella enterica 14028S)

3e-159

100

3) ssaU
( YP_005396818.1 )

type III secretion protein

NC_017046
(Salmonella enterica 798)

3e-159

100

4) SEEB0189_12425
( YP_008308800.1 )

secretion system apparatus protein SsaU

NC_021844
(Salmonella enterica CFSAN000189)

3e-159

100

5) CFSAN001921_10035
( YP_008255381.1 )

secretion system apparatus protein SsaU

NC_021814
(Salmonella enterica CFSAN001921)

3e-159

100

6) ssaU
( NP_460387.1 )

secretion system apparatus protein SsaU

NC_003197
(Salmonella enterica LT2)

3e-159

100

7) SPAB_01903
( YP_001588126.1 )

secretion system apparatus protein SsaU

NC_010102
(Salmonella enterica SGSC4150; SPB7)

3e-159

100

8) ssaU
( YP_005181266.1 )

putative type III secretion protein

NC_016810
(Salmonella enterica SL1344)

3e-159

100

9) ssaU
( YP_005242323.1 )

secretion system apparatus protein SsaU

NC_016857
(Salmonella enterica ST4/74)

3e-159

100

10) STMDT12_C14380
( YP_005247134.1 )

secretion system apparatus protein SsaU

NC_016860
(Salmonella enterica T000240)

3e-159

100

11) STU288_03430
( YP_007901791.1 )

secretion system apparatus protein SsaU

NC_021151
(Salmonella enterica U288)

3e-159

100

12) ssaU
( YP_005251926.1 )

secretion system apparatus protein SsaU

NC_016863
(Salmonella enterica UK-1)

3e-159

100

13) SBOV14181
( YP_008505289.1 )

putative type III secretion protein

NC_022241
(Salmonella enterica 3114)

6e-159

14) SSPA1329
( YP_002142168.1 )

secretion system apparatus protein SsaU

NC_011147
(Salmonella enterica AKU12601)

6e-159

15) ssaU
( YP_150682.1 )

type III secretion protein

NC_006511
(Salmonella enterica ATCC 9150)

6e-159

16) ssaU
( NP_456106.1 )

putative type III secretion protein

NC_003198
(Salmonella enterica CT18)

6e-159

17) STBHUCCB_13790
( YP_005216937.1 )

Secretion system apparatus protein ssaU

NC_016832
(Salmonella enterica P-stx-12)

6e-159

18) SeAg_B1752
( YP_002146621.1 )

secretion system apparatus protein SsaU

NC_011149
(Salmonella enterica SL483)

6e-159

19) ssaU
( NP_805093.1 )

secretion system apparatus protein SsaU

NC_004631
(Salmonella enterica Ty2)

6e-159

20) TY21A_06555
( YP_007925615.1 )

secretion system apparatus protein SsaU

NC_021176
(Salmonella enterica Ty21a)

6e-159

21) ssaU
( YP_002226663.1 )

secretion system apparatus protein SsaU

NC_011274
(Salmonella enterica 287/91)

2e-158

22) ssaU
( YP_008480909.1 )

putative type III secretion protein

NC_022221
(Salmonella enterica CDC1983-67)

2e-158

23) ssaU
( YP_002243723.1 )

secretion system apparatus protein SsaU

NC_011294
(Salmonella enterica P125109)

2e-158

24) ssaU
( YP_005212447.1 )

putative type III secretion protein

NC_016831
(Salmonella enterica RKS5078)

2e-158

25) I137_05715
( YP_008380653.1 )

secretion system apparatus protein SsaU

NC_021984
(Salmonella enterica S06004)

2e-158

26) CFSAN001992_04480
( YP_007470654.1 )

secretion system apparatus protein SsaU

NC_020307
(Salmonella enterica CFSAN001992)

3e-158

27) SeSA_A1518
( YP_002114435.1 )

secretion system apparatus protein SsaU

NC_011094
(Salmonella enterica CVM19633)

3e-158

28) SEEH1578_16345
( YP_008247328.1 )

secretion system apparatus protein SsaU

NC_021810
(Salmonella enterica 41578)

4e-158

29) SU5_02038
( YP_006087672.1 )

Type III secretion inner membrane protein

NC_017623
(Salmonella enterica B182)

4e-158

30) CFSAN002069_01890
( YP_008249238.1 )

secretion system apparatus protein SsaU

NC_021812
(Salmonella enterica CFSAN002069)

4e-158

31) SNSL254_A1532
( YP_002040673.1 )

secretion system apparatus protein SsaU

NC_011080
(Salmonella enterica SL254)

4e-158

32) SeHA_C1555
( YP_002045425.1 )

secretion system apparatus protein SsaU

NC_011083
(Salmonella enterica SL476)

4e-158

33) SN31241_24910
( YP_008360407.1 )

Secretion system apparatus protein ssaU

NC_021902
(Salmonella enterica USMARC-S3124.1)

4e-158

34) SeD_A1921
( YP_002215710.1 )

secretion system apparatus protein SsaU

NC_011205
(Salmonella enterica CT_02021853)

5e-158

35) ssaU
( YP_002637865.1 )

secretion system apparatus protein SsaU

NC_012125
(Salmonella enterica RKS4594)

6e-158

36) CFSAN002050_13505
( YP_008260612.1 )

secretion system apparatus protein SsaU

NC_021818
(Salmonella enterica CFSAN002050)

6e-158

37) STMMW_14271
( YP_005232481.1 )

putative type III secretion protein

NC_016854
(Salmonella enterica D23580)

7e-158

38) ssaU
( YP_216430.1 )

secretion system apparatus protein SsaU

NC_006905
(Salmonella enterica SC-B67)

4e-157

39) SARI_01560
( YP_001570596.1 )

secretion system apparatus protein SsaU

NC_010067
(Salmonella enterica RSK2980)

1e-147

40) SG1308
( YP_454988.1 )

secretion system apparatus protein SsaU

NC_007712
(Sodalis glossinidius morsitans)

9e-96

41) YE105_C0341
( YP_004296542.1 )

type III secretion protein, YscU/HrpY family

NC_015224
(Yersinia enterocolitica 105.5R(r))

3e-79

42) Y11_35491
( YP_006007048.1 )

type III secretion inner membrane protein

NC_017564
(Yersinia enterocolitica Y11)

3e-79

43) ssaU
( YP_002924937.1 )

secretion system apparatus protein SsaU

NC_012751
(Candidatus Hamiltonella defensa T5A)

2e-77

44) YpsIP31758_3811
( YP_001402765.1 )

secretion system apparatus protein SsaU

NC_009708
(Yersinia pseudotuberculosis IP 31758)

6e-73

45) YPK_3899
( YP_001722617.1 )

secretion system apparatus protein SsaU

NC_010465
(Yersinia pseudotuberculosis YPIII)

7e-73

46) YPTB0330
( YP_068876.1 )

secretion system apparatus protein SsaU

NC_006155
(Yersinia pseudotuberculosis IP 32953)

8e-73

47) YPTS_0354
( YP_001870800.1 )

secretion system apparatus protein SsaU

NC_010634
(Yersinia pseudotuberculosis PB1/+)

8e-73

48) flhB1
( NP_991822.1 )

secretion system apparatus protein SsaU

NC_005810
(Yersinia pestis 91001)

1e-71

49) A1122_03770
( YP_005520449.1 )

secretion system apparatus protein SsaU

NC_017168
(Yersinia pestis A1122)

1e-71

50) YpAngola_A3926
( YP_001608225.1 )

secretion system apparatus protein SsaU

NC_010159
(Yersinia pestis Angola)

1e-71

51) YPA_4009
( YP_653915.1 )

secretion system apparatus protein SsaU

NC_008150
(Yersinia pestis Antiqua)

1e-71

52) YPO0273
( YP_002345355.1 )

secretion system apparatus protein SsaU

NC_003143
(Yersinia pestis CO92)

1e-71

53) YPD8_0242
( YP_005507325.1 )

putative type III secretion apparatus protein

NC_017160
(Yersinia pestis D182038)

1e-71

54) y0533
( NP_667870.1 )

secretion system apparatus protein SsaU

NC_004088
(Yersinia pestis KIM)

1e-71

55) YPN_3394
( YP_649321.1 )

secretion system apparatus protein SsaU

NC_008149
(Yersinia pestis Nepal516)

1e-71

56) YPDSF_3697
( YP_001165020.1 )

secretion system apparatus protein SsaU

NC_009381
(Yersinia pestis Pestoides F)

1e-71

57) YPZ3_0235
( YP_003566407.1 )

putative type III secretion apparatus protein

NC_014029
(Yersinia pestis Z176003)

1e-71

58) Sbal195_2281
( YP_001554709.1 )

secretion system apparatus protein SsaU

NC_009997
(Shewanella baltica OS195)

1e-70

59) Sbal678_2291
( YP_005273498.1 )

type III secretion protein, YscU/HrpY family

NC_016901
(Shewanella baltica OS678)

1e-70

60) Sbal175_2388
( YP_006020945.1 )

type III secretion protein, YscU/HrpY family

NC_017571
(Shewanella baltica BA175)

7e-70

61) Sbal117_2093
( YP_006037324.1 )

type III secretion protein, YscU/HrpY family

NC_017579
(Shewanella baltica OS117)

5e-69

62) Sbal_1977
( YP_001050350.1 )

secretion system apparatus protein SsaU

NC_009052
(Shewanella baltica OS155)

5e-69

63) escU
( NP_902280.1 )

secretion system apparatus protein SsaU

NC_005085
(Chromobacterium violaceum ATCC 12472)

2e-67

64) SVI_2227
( YP_003556976.1 )

type III secretion system EscU protein

NC_014012
(Shewanella violacea DSS12)

9e-66

65) ETAC_04240
( YP_007628339.1 )

secretion system apparatus protein SsaU

NC_020796
(Edwardsiella tarda C07-087)

1e-49

66) esaU
( YP_003294939.1 )

type III secretion apparatus protein

NC_013508
(Edwardsiella tarda EIB202)

1e-49

67) esaU
( YP_005698438.1 )

protein EsaU

NC_017309
(Edwardsiella tarda FL6-60)

1e-49

68) NT01EI_0963
( YP_002932411.1 )

type III secretion protein, YscU/HrpY family

NC_012779
(Edwardsiella ictaluri 93-146)

2e-44

• Sequence Alignments

1) SE451236_12975 in NC_021820


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  554 bits (2091),  Expect = 3e-159, Method: Compositional matrix adjust.
 Identities = 352/352 (100%), Positives = 352/352 (100%), Gaps = 0/352 (0%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120
            QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLACGVLVVS  180
            INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240
            SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300
            QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352
            NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

2) SEEB0189_12425 in NC_021844


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  554 bits (2091),  Expect = 3e-159, Method: Compositional matrix adjust.
 Identities = 352/352 (100%), Positives = 352/352 (100%), Gaps = 0/352 (0%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120
            QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLACGVLVVS  180
            INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240
            SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300
            QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352
            NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

3) SPAB_01903 in NC_010102


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  554 bits (2091),  Expect = 3e-159, Method: Compositional matrix adjust.
 Identities = 352/352 (100%), Positives = 352/352 (100%), Gaps = 0/352 (0%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120
            QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLACGVLVVS  180
            INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240
            SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300
            QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352
            NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

4) ssaU in NC_016856


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  554 bits (2091),  Expect = 3e-159, Method: Compositional matrix adjust.
 Identities = 352/352 (100%), Positives = 352/352 (100%), Gaps = 0/352 (0%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120
            QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLACGVLVVS  180
            INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240
            SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300
            QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352
            NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

5) ssaU in NC_017046


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  554 bits (2091),  Expect = 3e-159, Method: Compositional matrix adjust.
 Identities = 352/352 (100%), Positives = 352/352 (100%), Gaps = 0/352 (0%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120
            QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLACGVLVVS  180
            INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240
            SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300
            QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352
            NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

6) ssaU in NC_003197


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  554 bits (2091),  Expect = 3e-159, Method: Compositional matrix adjust.
 Identities = 352/352 (100%), Positives = 352/352 (100%), Gaps = 0/352 (0%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120
            QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLACGVLVVS  180
            INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240
            SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300
            QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352
            NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

7) ssaU in NC_016810


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  554 bits (2091),  Expect = 3e-159, Method: Compositional matrix adjust.
 Identities = 352/352 (100%), Positives = 352/352 (100%), Gaps = 0/352 (0%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120
            QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLACGVLVVS  180
            INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240
            SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300
            QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352
            NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

8) ssaU in NC_016857


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  554 bits (2091),  Expect = 3e-159, Method: Compositional matrix adjust.
 Identities = 352/352 (100%), Positives = 352/352 (100%), Gaps = 0/352 (0%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120
            QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLACGVLVVS  180
            INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240
            SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300
            QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352
            NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

9) STMDT12_C14380 in NC_016860


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  554 bits (2091),  Expect = 3e-159, Method: Compositional matrix adjust.
 Identities = 352/352 (100%), Positives = 352/352 (100%), Gaps = 0/352 (0%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120
            QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLACGVLVVS  180
            INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240
            SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300
            QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352
            NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

10) STU288_03430 in NC_021151


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  554 bits (2091),  Expect = 3e-159, Method: Compositional matrix adjust.
 Identities = 352/352 (100%), Positives = 352/352 (100%), Gaps = 0/352 (0%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120
            QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLACGVLVVS  180
            INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240
            SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300
            QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352
            NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

11) ssaU in NC_016863


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  554 bits (2091),  Expect = 3e-159, Method: Compositional matrix adjust.
 Identities = 352/352 (100%), Positives = 352/352 (100%), Gaps = 0/352 (0%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120
            QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLACGVLVVS  180
            INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240
            SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300
            QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352
            NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

12) CFSAN001921_10035 in NC_021814


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  554 bits (2091),  Expect = 3e-159, Method: Compositional matrix adjust.
 Identities = 352/352 (100%), Positives = 352/352 (100%), Gaps = 0/352 (0%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120
            QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLACGVLVVS  180
            INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240
            SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300
            QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352
            NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

13) SeAg_B1752 in NC_011149


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  553 bits (2087),  Expect = 6e-159, Method: Compositional matrix adjust.
 Identities = 351/352 (99%), Positives = 351/352 (99%), Gaps = 0/352 (0%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120
            QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLACGVLVVS  180
            INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  181  SLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240
            SLIKWLWVGVM FYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300
            QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352
            NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

14) SBOV14181 in NC_022241


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  553 bits (2087),  Expect = 6e-159, Method: Compositional matrix adjust.
 Identities = 351/352 (99%), Positives = 351/352 (99%), Gaps = 0/352 (0%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120
            QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLACGVLVVS  180
            INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  181  SLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240
            SLIKWLWVGVM FYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300
            QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352
            NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

15) SSPA1329 in NC_011147


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  553 bits (2087),  Expect = 6e-159, Method: Compositional matrix adjust.
 Identities = 351/352 (99%), Positives = 351/352 (99%), Gaps = 0/352 (0%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120
            QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLACGVLVVS  180
            INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  181  SLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240
            SLIKWLWVGVM FYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300
            QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352
            NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

16) ssaU in NC_006511


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  553 bits (2087),  Expect = 6e-159, Method: Compositional matrix adjust.
 Identities = 351/352 (99%), Positives = 351/352 (99%), Gaps = 0/352 (0%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120
            QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLACGVLVVS  180
            INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  181  SLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240
            SLIKWLWVGVM FYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300
            QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352
            NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

17) ssaU in NC_003198


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  553 bits (2087),  Expect = 6e-159, Method: Compositional matrix adjust.
 Identities = 351/352 (99%), Positives = 351/352 (99%), Gaps = 0/352 (0%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120
            QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLACGVLVVS  180
            INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  181  SLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240
            SLIKWLWVGVM FYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300
            QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352
            NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

18) STBHUCCB_13790 in NC_016832


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  553 bits (2087),  Expect = 6e-159, Method: Compositional matrix adjust.
 Identities = 351/352 (99%), Positives = 351/352 (99%), Gaps = 0/352 (0%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120
            QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLACGVLVVS  180
            INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  181  SLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240
            SLIKWLWVGVM FYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300
            QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352
            NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

19) TY21A_06555 in NC_021176


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  553 bits (2087),  Expect = 6e-159, Method: Compositional matrix adjust.
 Identities = 351/352 (99%), Positives = 351/352 (99%), Gaps = 0/352 (0%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120
            QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLACGVLVVS  180
            INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  181  SLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240
            SLIKWLWVGVM FYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300
            QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352
            NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

20) ssaU in NC_004631


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  553 bits (2087),  Expect = 6e-159, Method: Compositional matrix adjust.
 Identities = 351/352 (99%), Positives = 351/352 (99%), Gaps = 0/352 (0%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120
            QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLACGVLVVS  180
            INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  181  SLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240
            SLIKWLWVGVM FYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300
            QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352
            NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

21) ssaU in NC_011294


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  552 bits (2082),  Expect = 2e-158, Method: Compositional matrix adjust.
 Identities = 350/352 (99%), Positives = 351/352 (99%), Gaps = 0/352 (0%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120
            QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLACGLLVVS  180
            INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACG+LVVS
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  181  SLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240
            SLIKWLWVGVM FYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300
            QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352
            NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

22) ssaU in NC_011274


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  552 bits (2082),  Expect = 2e-158, Method: Compositional matrix adjust.
 Identities = 350/352 (99%), Positives = 351/352 (99%), Gaps = 0/352 (0%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120
            QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLACGLLVVS  180
            INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACG+LVVS
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  181  SLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240
            SLIKWLWVGVM FYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300
            QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352
            NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

23) ssaU in NC_022221


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  552 bits (2082),  Expect = 2e-158, Method: Compositional matrix adjust.
 Identities = 350/352 (99%), Positives = 351/352 (99%), Gaps = 0/352 (0%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120
            QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLACGLLVVS  180
            INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACG+LVVS
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  181  SLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240
            SLIKWLWVGVM FYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300
            QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352
            NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

24) ssaU in NC_016831


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  552 bits (2082),  Expect = 2e-158, Method: Compositional matrix adjust.
 Identities = 350/352 (99%), Positives = 351/352 (99%), Gaps = 0/352 (0%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120
            QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLACGLLVVS  180
            INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACG+LVVS
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  181  SLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240
            SLIKWLWVGVM FYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300
            QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352
            NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

25) I137_05715 in NC_021984


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  552 bits (2082),  Expect = 2e-158, Method: Compositional matrix adjust.
 Identities = 350/352 (99%), Positives = 351/352 (99%), Gaps = 0/352 (0%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120
            QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLACGLLVVS  180
            INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACG+LVVS
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  181  SLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240
            SLIKWLWVGVM FYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300
            QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352
            NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

26) CFSAN001992_04480 in NC_020307


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  551 bits (2079),  Expect = 3e-158, Method: Compositional matrix adjust.
 Identities = 348/352 (99%), Positives = 350/352 (99%), Gaps = 0/352 (0%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIASITFTL  60
            MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILI SITFTL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   QLVNKPFSYALTQLTHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120
            QLVNKPFSYALTQL+HALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLACGLLVVS  180
            INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACG+LVVS
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  181  SLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240
            SLIKWLWVGVM FYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300
            QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352
            NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

27) SeSA_A1518 in NC_011094


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  551 bits (2079),  Expect = 3e-158, Method: Compositional matrix adjust.
 Identities = 348/352 (99%), Positives = 350/352 (99%), Gaps = 0/352 (0%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIASITFTL  60
            MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILI SITFTL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   QLVNKPFSYALTQLTHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120
            QLVNKPFSYALTQL+HALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLACGLLVVS  180
            INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACG+LVVS
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  181  SLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240
            SLIKWLWVGVM FYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300
            QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352
            NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

28) SEEH1578_16345 in NC_021810


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  550 bits (2077),  Expect = 4e-158, Method: Compositional matrix adjust.
 Identities = 348/352 (99%), Positives = 349/352 (99%), Gaps = 0/352 (0%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   QLVNKPFSYALTQLSHVLIESLASVLLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120
            QLVNKPFSYALTQLSH LIESL+S LLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLACGVLVVS  180
            INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  181  SLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240
            SLIKWLWVGVM FYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300
            QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352
            NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

29) SU5_02038 in NC_017623


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  550 bits (2077),  Expect = 4e-158, Method: Compositional matrix adjust.
 Identities = 348/352 (99%), Positives = 349/352 (99%), Gaps = 0/352 (0%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   QLVNKPFSYALTQLSHVLIESLASVLLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120
            QLVNKPFSYALTQLSH LIESL+S LLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLACGVLVVS  180
            INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  181  SLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240
            SLIKWLWVGVM FYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300
            QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352
            NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

30) CFSAN002069_01890 in NC_021812


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  550 bits (2077),  Expect = 4e-158, Method: Compositional matrix adjust.
 Identities = 348/352 (99%), Positives = 349/352 (99%), Gaps = 0/352 (0%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   QLVNKPFSYALTQLSHVLIESLASVLLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120
            QLVNKPFSYALTQLSH LIESL+S LLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLACGVLVVS  180
            INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  181  SLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240
            SLIKWLWVGVM FYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300
            QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352
            NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

31) SeHA_C1555 in NC_011083


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  550 bits (2077),  Expect = 4e-158, Method: Compositional matrix adjust.
 Identities = 348/352 (99%), Positives = 349/352 (99%), Gaps = 0/352 (0%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   QLVNKPFSYALTQLSHVLIESLASVLLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120
            QLVNKPFSYALTQLSH LIESL+S LLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLACGVLVVS  180
            INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  181  SLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240
            SLIKWLWVGVM FYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300
            QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352
            NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

32) SNSL254_A1532 in NC_011080


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  550 bits (2077),  Expect = 4e-158, Method: Compositional matrix adjust.
 Identities = 348/352 (99%), Positives = 349/352 (99%), Gaps = 0/352 (0%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   QLVNKPFSYALTQLSHVLIESLASVLLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120
            QLVNKPFSYALTQLSH LIESL+S LLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLACGVLVVS  180
            INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  181  SLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240
            SLIKWLWVGVM FYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300
            QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352
            NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

33) SN31241_24910 in NC_021902


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  550 bits (2077),  Expect = 4e-158, Method: Compositional matrix adjust.
 Identities = 348/352 (99%), Positives = 349/352 (99%), Gaps = 0/352 (0%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   QLVNKPFSYALTQLSHVLIESLASVLLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120
            QLVNKPFSYALTQLSH LIESL+S LLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLACGVLVVS  180
            INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  181  SLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240
            SLIKWLWVGVM FYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300
            QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352
            NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

34) SeD_A1921 in NC_011205


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  550 bits (2075),  Expect = 5e-158, Method: Compositional matrix adjust.
 Identities = 348/352 (99%), Positives = 349/352 (99%), Gaps = 0/352 (0%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   QLVNKPFSYALTQLSHILIESLASVLLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120
            QLVNKPFSYALTQLSH LIESL+S LLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLACGVLVVS  180
            INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  181  SLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240
            SLIKWLWVGVM FYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300
            QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352
            NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

35) ssaU in NC_012125


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  550 bits (2075),  Expect = 6e-158, Method: Compositional matrix adjust.
 Identities = 349/352 (99%), Positives = 350/352 (99%), Gaps = 0/352 (0%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGGVIASKAIGFKSEH  120
            QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVG VIASKAIGFKSEH
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLACGLLVVS  180
            INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACG+LVVS
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  181  SLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240
            SLIKWLWVGVM FYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300
            QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352
            NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

36) CFSAN002050_13505 in NC_021818


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  549 bits (2074),  Expect = 6e-158, Method: Compositional matrix adjust.
 Identities = 348/352 (99%), Positives = 350/352 (99%), Gaps = 0/352 (0%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGGVIASKAIGFKSEH  120
            QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVG VIASKAIGFKSEH
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLACGLLVVS  180
            INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACG+LVVS
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  181  SLIKWLWVGVMAFYIVVGILDYSFQYYKVRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240
            SLIKWLWVGVM FYIVVGILDYSFQYYK+RKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300
            QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352
            NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

37) STMMW_14271 in NC_016854


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  549 bits (2074),  Expect = 7e-158, Method: Compositional matrix adjust.
 Identities = 351/352 (99%), Positives = 351/352 (99%), Gaps = 0/352 (0%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120
            QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLACGVLVVS  180
            INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEYKDLEGDPQMKTRRREM  240
            SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQE KDLEGDPQMKTRRREM
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300
            QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352
            NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

38) ssaU in NC_006905


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  547 bits (2064),  Expect = 4e-157, Method: Compositional matrix adjust.
 Identities = 349/352 (99%), Positives = 350/352 (99%), Gaps = 0/352 (0%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120
            QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLACGLLVVS  180
            INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACG+LVVS
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  181  SLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240
            SLIKWLWVGVM FYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVGLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300
            QSEIQSGSLAQSVKQSVAVVRNPTHIAV LGYHPTDMPIPRVLEKGSDAQANYIVNIAER
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352
            NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

39) SARI_01560 in NC_010067


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  516 bits (1945),  Expect = 1e-147, Method: Compositional matrix adjust.
 Identities = 320/351 (92%), Positives = 341/351 (98%), Gaps = 0/351 (0%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALFLYFHFLTEKVILRIIELINFTL  60
            MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIAL+LYFHF+TEK+IL +IE I FTL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   QLINKPFSYALTQlsyslvdslssvilflGAGIIISTVASVFLQVGVVIASKAIGFKSDH  120
            QL+NKPFSYALTQLS +L++SL+S +LFLGAG+I++TV+SVFLQVGVVIASKAIGFKS+H
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  121  INPVSNFKQIFSLHSVVELCKSTLKVIILSLILAFFFYYYVSTFRALPYCGLACALPVVF  180
            INPVSNFKQIFSLHSVVELCKS+LKVI+LSLI+AFFFYYY STFRALPYCGLAC++ VV 
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  181  CLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240
             LIKWLWVGVM FYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300
            QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  301  NCIPVVENVDLARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTET  351
            NCIPVVENV+LARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTET
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTET  351

40) SG1308 in NC_007712


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  343 bits (1289),  Expect = 9e-96, Method: Compositional matrix adjust.
 Identities = 201/345 (59%), Positives = 279/345 (81%), Gaps = 0/345 (0%)

Query  1    MGEKTEKPTEKRRRDRRKEGQVIKSNEITSGVQLAAILLFWHLFAEAVIERTSTLIVLSI  60
            M+EKTE+PTEK+ RD RKEGQV+KS EITS  QL A+ L+ H+F+E +I      I +++
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   SLINRPFLFAFNQLLHVVlssagllfalfggmlalaTVGSVLLQIGFVLASKAVGIKGRR  120
             L+N+PF +A+ QL H ++ S    + ++G+ + +ATVGSV+LQ+G V+ASKA+G+K+ +
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  121  INPVSNLKQIFSLHSLVELCKSTGKVVVLTLIFAGLFYYYATTFQALPFCNSRCALPLFT  180
            INPVSN+KQIFSLHS+VELCKS+ KV++L+LIFA +FYYYA+TF+ALP+C   C++ + +
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  181  TFTRWMWFGLIGFYIVLGVLDYAFQAHNTLKQQRMSKEEVKQEYKDAEGDPYMKQRRHEM  240
            ++ +W+W G++ FYIV+G+LDY+FQ  +  K+ +MSK++VKQE KD EGDP MK RR+EM
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  241  QHEIQSGSLAHNVKRSAVVIRNPTHIAICLGYHPIDMPVPRVLDKGTAERAGQIVDLAQR  300
            Q EIQSGSLA++VK+S  V+RNPTHIA+CLGYHP DMP+PRVL+KG+  +A  IV++A+R
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  301  AAVPVVENIPLARALFQHVGCGDRIPETLFEPVAVLLRMVLEIDY  345
              +PVVEN+ LAR+LF +V  GD+IPETLFEPVA LLRMV+ IDY
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDY  345

41) YE105_C0341 in NC_015224


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  288 bits (1079),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 168/351 (48%), Positives = 267/351 (77%), Gaps = 2/351 (0%)

Query  6    SEKNEKPTAKRLREAREKGQVIKSVEITSGMQLVVLVAYF-FLVGNTIIDQIGALIRSTI  64
            SEK E+PT K+LR++R  GQV+KS+EITS  QL+ L  YF F+  + I+  I + I  T+
Sbjct  2    SEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIES-ITFTL  60

Query  65   NQLQQPFTFALARIGSECTAVLIHIVGILGGALILMTIIAGIAQVGPLFATKAVAFKSEH  124
            + +++PF++AL++++      L   + +LG+++I+ T+ + + QVG ++A+KA++FKSEH
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  125  INPIDNAKQLFSLRSLFELIKSLLKVGVLTLIFGYLLAQYATSFGYLAYCGSSCAIPVFG  184
            INP+ N KQ+FSL+S+ EL KS LKV +L+LIF++++  YA++F  L+YCG +C++ V +
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  185  TLMSWLLGALIACYVVFSLLDYTFQHYNTMKQLKMSHEEVKREYKDSDGDPHIKQKRRQL  244
            +L+ WL  +++  Y+V ++LDY+FQ Y+  K+LKMS ++VK+E KD +GDP++K +RR++
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  245  QQEVQSGSFAKNVQRSTAIVRNPTHFAVCLFYHPDDAPLPMVIEKGKGERAALIIKLAEQ  304
            Q E+QSGS+A++V++S A+VRNPTH+AVCL YHP D P+P V+EKG + +A  I+++AE+
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  305  QGIPIVENIALARALHRDVVCGDTIPETLFEPVAAILRLALALDYQSPEED  355
            + IP+VEN+ LAR+L  +V  GD IPETLFEPVAA+LR+ + +DY  + E 
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTET  351

42) Y11_35491 in NC_017564


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  288 bits (1079),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 168/351 (48%), Positives = 267/351 (77%), Gaps = 2/351 (0%)

Query  6    SEKNEKPTAKRLREAREKGQVIKSVEITSGMQLVVLVAYF-FLVGNTIIDQIGALIRSTI  64
            SEK E+PT K+LR++R  GQV+KS+EITS  QL+ L  YF F+  + I+  I + I  T+
Sbjct  2    SEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIES-ITFTL  60

Query  65   NQLQQPFTFALARIGSECTAVLIHIVGILGGALILMTIIAGIAQVGPLFATKAVAFKSEH  124
            + +++PF++AL++++      L   + +LG+++I+ T+ + + QVG ++A+KA++FKSEH
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  125  INPIDNAKQLFSLRSLFELIKSLLKVGVLTLIFGYLLAQYATSFGYLAYCGSSCAIPVFG  184
            INP+ N KQ+FSL+S+ EL KS LKV +L+LIF++++  YA++F  L+YCG +C++ V +
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  185  TLMSWLLGALIACYVVFSLLDYTFQHYNTMKQLKMSHEEVKREYKDSDGDPHIKQKRRQL  244
            +L+ WL  +++  Y+V ++LDY+FQ Y+  K+LKMS ++VK+E KD +GDP++K +RR++
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  245  QQEVQSGSFAKNVQRSTAIVRNPTHFAVCLFYHPDDAPLPMVIEKGKGERAALIIKLAEQ  304
            Q E+QSGS+A++V++S A+VRNPTH+AVCL YHP D P+P V+EKG + +A  I+++AE+
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  305  QGIPIVENIALARALHRDVVCGDTIPETLFEPVAAILRLALALDYQSPEED  355
            + IP+VEN+ LAR+L  +V  GD IPETLFEPVAA+LR+ + +DY  + E 
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTET  351

43) ssaU in NC_012751


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  282 bits (1057),  Expect = 2e-77, Method: Compositional matrix adjust.
 Identities = 164/352 (47%), Positives = 267/352 (76%), Gaps = 0/352 (0%)

Query  1    MPEKNEKPTEKRIKESREKGEVIKSVEITSGTQLAIILIYFSLVGPNLVNLMGLLITSSI  60
            M+EK E+PTEK+++++R  G+V+KS+EITS  QL  + +YF +   +++ ++   IT ++
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   KKLDKPIGIAVLDLTSEIASVFLQIMGVLGGGLALATILVVMSQVGPLLAIKAIGFKGQH  120
            + ++KP++ A+ +L+  +   +   +  LG+G+ +AT+  V  QVG ++A KAIGFK++H
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  121  INPISNFKNLVSLRSLFEICKSLFKVILVSLIFAYLLREYAPTFGYLSYCGTHCAFPIFG  180
            INP+SNFK++ SL+S+ E+CKS +KVI++SLIFA+++  YA+TF  L+YCG  C+  + +
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  181  TLMQWLLGSLLACYVIFGILDYSFQHYNTMKKMKMSREEIKREYKDTDGDPEIKSKRREL  240
            +L++WL  +++  Y++ GILDYSFQ Y+  K +KMS++++K+E KD +GDP++K++RRE+
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  241  QQEIQSGSLSNKVKGSTAVIKNPTHFAVCLFYHPEEAPLPIVLEKGKGTRAQTIIKLAEK  300
            Q EIQSGSL++ VK S AV++NPTH+AVCL YHP + P+P VLEKG +++A+ I+++AE+
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  301  FDVPVVENVRLAQMLHNEVNCDEIIPEHLFEPVAAILRFVLNLEYQADDEST  352
              +PVVENV LA+ L  EV+ ++ IPE LFEPVAA+LR V++++Y    E+ 
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

44) YpsIP31758_3811 in NC_009708


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  267 bits (999),  Expect = 6e-73, Method: Compositional matrix adjust.
 Identities = 169/351 (49%), Positives = 262/351 (75%), Gaps = 0/351 (0%)

Query  4    TEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSSII  63
            +EK E+PT K+L++++  GQVVKS+EITS  QL+AL +YF +    ++      I  ++ 
Sbjct  2    SEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQ  61

Query  64   QLQQPLTLALARIGAECMTVLMHivvvlggalivvtiiAGIAQVGPLLATKAVSFKGERI  123
             +++P++ AL++++   +  L   ++ LG+++IV T+ + + QVG ++A+KA++FK+E+I
Sbjct  62   LVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEHI  121

Query  124  NPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQYAPSFGYLTHCGSRCALPVFST  183
            NP+ N KQ+FSL+SV EL KS LKV +L+LIF++++  YA++F  L  CG  C++ V S+
Sbjct  122  NPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVSS  181

Query  184  LMGWLLGSLIACYLVFSLMDYTFQRYTIMKQLKMSHDEVKREHKDSNGDPHIKQKRRQLQ  243
            L+ WL  +++  Y+V +++DY+FQ Y I K+LKMS D+VK+EHKD +GDP++K +RR++Q
Sbjct  182  LIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREMQ  241

Query  244  HEVQSGSFATNVRRSTAVVRNPTHFAVCLVYHPEETPLPIVIEKGHDEQAALIVSLAEQS  303
             E+QSGS+A +V++S AVVRNPTH+AVCL YHP + P+P V+EKG D QA  IV++AE++
Sbjct  242  SEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAERN  301

Query  304  GIPVVENIALARALHRDVACGDTIPEQFFEPVAALLRMALELDYQPSSDDP  354
             IPVVEN+ LAR+L  +V  GD IPE +FEPVAALLRM + +DY  S++ P
Sbjct  302  CIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

45) YPK_3899 in NC_010465


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  267 bits (999),  Expect = 7e-73, Method: Compositional matrix adjust.
 Identities = 169/351 (49%), Positives = 262/351 (75%), Gaps = 0/351 (0%)

Query  3    TEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSSII  62
            +EK E+PT K+L++++  GQVVKS+EITS  QL+AL +YF +    ++      I  ++ 
Sbjct  2    SEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQ  61

Query  63   QLQQPLTLALARIGAECMTVLMHivvvlggalivvtiiAGIAQVGPLLATKAVSFKGERI  122
             +++P++ AL++++   +  L   ++ LG+++IV T+ + + QVG ++A+KA++FK+E+I
Sbjct  62   LVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEHI  121

Query  123  NPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLIQYAPSFGYLTHCGSRCALPVFST  182
            NP+ N KQ+FSL+SV EL KS LKV +L+LIF++++  YA++F  L  CG  C++ V S+
Sbjct  122  NPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVSS  181

Query  183  LMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREHKDSNGDPHIKQKRRQLQ  242
            L+ WL  +++  Y+V +++DY+FQ Y I K+LKMS D+VK+EHKD +GDP++K +RR++Q
Sbjct  182  LIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREMQ  241

Query  243  HEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLAEQS  302
             E+QSGS+A +V++S AVVRNPTH+AVCL YHP + P+P V+EKG D QA  IV++AE++
Sbjct  242  SEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAERN  301

Query  303  GIPVVENIALARALHRDVACGDTIPEQFFEPVAALLRMALELDYQPSSDDP  353
             IPVVEN+ LAR+L  +V  GD IPE +FEPVAALLRM + +DY  S++ P
Sbjct  302  CIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

46) YPTB0330 in NC_006155


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  267 bits (998),  Expect = 8e-73, Method: Compositional matrix adjust.
 Identities = 169/351 (49%), Positives = 262/351 (75%), Gaps = 0/351 (0%)

Query  3    TEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSSII  62
            +EK E+PT K+L++++  GQVVKS+EITS  QL+AL +YF +    ++      I  ++ 
Sbjct  2    SEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQ  61

Query  63   QLQQPLTLALARIGAECMTVLMHivvvlggalivvtiiAGIAQVGPLLATKAVSFKGERI  122
             +++P++ AL++++   +  L   ++ LG+++IV T+ + + QVG ++A+KA++FK+E+I
Sbjct  62   LVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEHI  121

Query  123  NPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQYAPSFGYLTHCGSRCALPVFST  182
            NP+ N KQ+FSL+SV EL KS LKV +L+LIF++++  YA++F  L  CG  C++ V S+
Sbjct  122  NPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVSS  181

Query  183  LMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREHKDSNGDPHIKQKRRQLQ  242
            L+ WL  +++  Y+V +++DY+FQ Y I K+LKMS D+VK+EHKD +GDP++K +RR++Q
Sbjct  182  LIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREMQ  241

Query  243  HEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLAEQS  302
             E+QSGS+A +V++S AVVRNPTH+AVCL YHP + P+P V+EKG D QA  IV++AE++
Sbjct  242  SEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAERN  301

Query  303  GIPVVENIALARALHRDVACGDTIPEQFFEPVAALLRMALELDYQPSSDDP  353
             IPVVEN+ LAR+L  +V  GD IPE +FEPVAALLRM + +DY  S++ P
Sbjct  302  CIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

47) YPTS_0354 in NC_010634


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  267 bits (998),  Expect = 8e-73, Method: Compositional matrix adjust.
 Identities = 169/351 (49%), Positives = 262/351 (75%), Gaps = 0/351 (0%)

Query  3    TEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSSII  62
            +EK E+PT K+L++++  GQVVKS+EITS  QL+AL +YF +    ++      I  ++ 
Sbjct  2    SEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQ  61

Query  63   QLQQPLTLALARIGAECMTVLMHivvvlggalivvtiiAGIAQVGPLLATKAVSFKGERI  122
             +++P++ AL++++   +  L   ++ LG+++IV T+ + + QVG ++A+KA++FK+E+I
Sbjct  62   LVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEHI  121

Query  123  NPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQYAPSFGYLTHCGSRCALPVFST  182
            NP+ N KQ+FSL+SV EL KS LKV +L+LIF++++  YA++F  L  CG  C++ V S+
Sbjct  122  NPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVSS  181

Query  183  LMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREHKDSNGDPHIKQKRRQLQ  242
            L+ WL  +++  Y+V +++DY+FQ Y I K+LKMS D+VK+EHKD +GDP++K +RR++Q
Sbjct  182  LIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREMQ  241

Query  243  HEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLAEQS  302
             E+QSGS+A +V++S AVVRNPTH+AVCL YHP + P+P V+EKG D QA  IV++AE++
Sbjct  242  SEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAERN  301

Query  303  GIPVVENIALARALHRDVACGDTIPEQFFEPVAALLRMALELDYQPSSDDP  353
             IPVVEN+ LAR+L  +V  GD IPE +FEPVAALLRM + +DY  S++ P
Sbjct  302  CIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

48) A1122_03770 in NC_017168


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  263 bits (983),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 168/351 (48%), Positives = 261/351 (75%), Gaps = 0/351 (0%)

Query  3    TEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSSII  62
            +EK E+PT K+L++++  GQVVKS+EITS  QL+AL +YF +    ++      I  ++ 
Sbjct  2    SEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQ  61

Query  63   QLQQPLTLALARIGAECMTVLMHivvvlggalivvtiiAGIAQVGPLLATKAVSFKGERI  122
             +++P++ AL++++   +  L   ++ LG+++IV T+ + + QVG ++A+KA++FK+E+I
Sbjct  62   LVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEHI  121

Query  123  NPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQYAPSFGYLTHCGSRCALPVFST  182
            NP+ N KQ+FSL+SV EL KS LKV +L+LIF++++  YA++F  L  CG  C++ V S+
Sbjct  122  NPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVSS  181

Query  183  LMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREYKDSNGDPHIKQKRRQLQ  242
            L+ WL  +++  Y+V +++DY+FQ Y I K+LKMS D+VK+E KD +GDP++K +RR++Q
Sbjct  182  LIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREMQ  241

Query  243  HEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLAEQS  302
             E+QSGS+A +V++S AVVRNPTH+AVCL YHP + P+P V+EKG D QA  IV++AE++
Sbjct  242  SEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAERN  301

Query  303  GIPVVENIALARALHRDVACGDTIPEQFFEPVAALLRMALELDYQPSSDDP  353
             IPVVEN+ LAR+L  +V  GD IPE +FEPVAALLRM + +DY  S++ P
Sbjct  302  CIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

49) YpAngola_A3926 in NC_010159


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  263 bits (983),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 168/351 (48%), Positives = 261/351 (75%), Gaps = 0/351 (0%)

Query  3    TEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSSII  62
            +EK E+PT K+L++++  GQVVKS+EITS  QL+AL +YF +    ++      I  ++ 
Sbjct  2    SEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQ  61

Query  63   QLQQPLTLALARIGAECMTVLMHivvvlggalivvtiiAGIAQVGPLLATKAVSFKGERI  122
             +++P++ AL++++   +  L   ++ LG+++IV T+ + + QVG ++A+KA++FK+E+I
Sbjct  62   LVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEHI  121

Query  123  NPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQYAPSFGYLTHCGSRCALPVFST  182
            NP+ N KQ+FSL+SV EL KS LKV +L+LIF++++  YA++F  L  CG  C++ V S+
Sbjct  122  NPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVSS  181

Query  183  LMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREYKDSNGDPHIKQKRRQLQ  242
            L+ WL  +++  Y+V +++DY+FQ Y I K+LKMS D+VK+E KD +GDP++K +RR++Q
Sbjct  182  LIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREMQ  241

Query  243  HEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLAEQS  302
             E+QSGS+A +V++S AVVRNPTH+AVCL YHP + P+P V+EKG D QA  IV++AE++
Sbjct  242  SEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAERN  301

Query  303  GIPVVENIALARALHRDVACGDTIPEQFFEPVAALLRMALELDYQPSSDDP  353
             IPVVEN+ LAR+L  +V  GD IPE +FEPVAALLRM + +DY  S++ P
Sbjct  302  CIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

50) YPA_4009 in NC_008150


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  263 bits (983),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 168/351 (48%), Positives = 261/351 (75%), Gaps = 0/351 (0%)

Query  3    TEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSSII  62
            +EK E+PT K+L++++  GQVVKS+EITS  QL+AL +YF +    ++      I  ++ 
Sbjct  2    SEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQ  61

Query  63   QLQQPLTLALARIGAECMTVLMHivvvlggalivvtiiAGIAQVGPLLATKAVSFKGERI  122
             +++P++ AL++++   +  L   ++ LG+++IV T+ + + QVG ++A+KA++FK+E+I
Sbjct  62   LVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEHI  121

Query  123  NPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQYAPSFGYLTHCGSRCALPVFST  182
            NP+ N KQ+FSL+SV EL KS LKV +L+LIF++++  YA++F  L  CG  C++ V S+
Sbjct  122  NPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVSS  181

Query  183  LMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREYKDSNGDPHIKQKRRQLQ  242
            L+ WL  +++  Y+V +++DY+FQ Y I K+LKMS D+VK+E KD +GDP++K +RR++Q
Sbjct  182  LIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREMQ  241

Query  243  HEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLAEQS  302
             E+QSGS+A +V++S AVVRNPTH+AVCL YHP + P+P V+EKG D QA  IV++AE++
Sbjct  242  SEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAERN  301

Query  303  GIPVVENIALARALHRDVACGDTIPEQFFEPVAALLRMALELDYQPSSDDP  353
             IPVVEN+ LAR+L  +V  GD IPE +FEPVAALLRM + +DY  S++ P
Sbjct  302  CIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

51) flhB1 in NC_005810


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  263 bits (983),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 168/351 (48%), Positives = 261/351 (75%), Gaps = 0/351 (0%)

Query  4    TEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSSII  63
            +EK E+PT K+L++++  GQVVKS+EITS  QL+AL +YF +    ++      I  ++ 
Sbjct  2    SEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQ  61

Query  64   QLQQPLTLALARIGAECMTVLMHivvvlggalivvtiiAGIAQVGPLLATKAVSFKGERI  123
             +++P++ AL++++   +  L   ++ LG+++IV T+ + + QVG ++A+KA++FK+E+I
Sbjct  62   LVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEHI  121

Query  124  NPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQYAPSFGYLTHCGSRCALPVFST  183
            NP+ N KQ+FSL+SV EL KS LKV +L+LIF++++  YA++F  L  CG  C++ V S+
Sbjct  122  NPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVSS  181

Query  184  LMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREYKDSNGDPHIKQKRRQLQ  243
            L+ WL  +++  Y+V +++DY+FQ Y I K+LKMS D+VK+E KD +GDP++K +RR++Q
Sbjct  182  LIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREMQ  241

Query  244  HEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLAEQS  303
             E+QSGS+A +V++S AVVRNPTH+AVCL YHP + P+P V+EKG D QA  IV++AE++
Sbjct  242  SEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAERN  301

Query  304  GIPVVENIALARALHRDVACGDTIPEQFFEPVAALLRMALELDYQPSSDDP  354
             IPVVEN+ LAR+L  +V  GD IPE +FEPVAALLRM + +DY  S++ P
Sbjct  302  CIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

52) YPO0273 in NC_003143


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  263 bits (983),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 168/351 (48%), Positives = 261/351 (75%), Gaps = 0/351 (0%)

Query  3    TEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSSII  62
            +EK E+PT K+L++++  GQVVKS+EITS  QL+AL +YF +    ++      I  ++ 
Sbjct  2    SEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQ  61

Query  63   QLQQPLTLALARIGAECMTVLMHivvvlggalivvtiiAGIAQVGPLLATKAVSFKGERI  122
             +++P++ AL++++   +  L   ++ LG+++IV T+ + + QVG ++A+KA++FK+E+I
Sbjct  62   LVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEHI  121

Query  123  NPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQYAPSFGYLTHCGSRCALPVFST  182
            NP+ N KQ+FSL+SV EL KS LKV +L+LIF++++  YA++F  L  CG  C++ V S+
Sbjct  122  NPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVSS  181

Query  183  LMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREYKDSNGDPHIKQKRRQLQ  242
            L+ WL  +++  Y+V +++DY+FQ Y I K+LKMS D+VK+E KD +GDP++K +RR++Q
Sbjct  182  LIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREMQ  241

Query  243  HEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLAEQS  302
             E+QSGS+A +V++S AVVRNPTH+AVCL YHP + P+P V+EKG D QA  IV++AE++
Sbjct  242  SEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAERN  301

Query  303  GIPVVENIALARALHRDVACGDTIPEQFFEPVAALLRMALELDYQPSSDDP  353
             IPVVEN+ LAR+L  +V  GD IPE +FEPVAALLRM + +DY  S++ P
Sbjct  302  CIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

53) YPD8_0242 in NC_017160


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  263 bits (983),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 168/351 (48%), Positives = 261/351 (75%), Gaps = 0/351 (0%)

Query  3    TEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSSII  62
            +EK E+PT K+L++++  GQVVKS+EITS  QL+AL +YF +    ++      I  ++ 
Sbjct  2    SEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQ  61

Query  63   QLQQPLTLALARIGAECMTVLMHivvvlggalivvtiiAGIAQVGPLLATKAVSFKGERI  122
             +++P++ AL++++   +  L   ++ LG+++IV T+ + + QVG ++A+KA++FK+E+I
Sbjct  62   LVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEHI  121

Query  123  NPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQYAPSFGYLTHCGSRCALPVFST  182
            NP+ N KQ+FSL+SV EL KS LKV +L+LIF++++  YA++F  L  CG  C++ V S+
Sbjct  122  NPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVSS  181

Query  183  LMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREYKDSNGDPHIKQKRRQLQ  242
            L+ WL  +++  Y+V +++DY+FQ Y I K+LKMS D+VK+E KD +GDP++K +RR++Q
Sbjct  182  LIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREMQ  241

Query  243  HEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLAEQS  302
             E+QSGS+A +V++S AVVRNPTH+AVCL YHP + P+P V+EKG D QA  IV++AE++
Sbjct  242  SEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAERN  301

Query  303  GIPVVENIALARALHRDVACGDTIPEQFFEPVAALLRMALELDYQPSSDDP  353
             IPVVEN+ LAR+L  +V  GD IPE +FEPVAALLRM + +DY  S++ P
Sbjct  302  CIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

54) y0533 in NC_004088


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  263 bits (983),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 168/351 (48%), Positives = 261/351 (75%), Gaps = 0/351 (0%)

Query  4    TEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSSII  63
            +EK E+PT K+L++++  GQVVKS+EITS  QL+AL +YF +    ++      I  ++ 
Sbjct  2    SEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQ  61

Query  64   QLQQPLTLALARIGAECMTVLMHivvvlggalivvtiiAGIAQVGPLLATKAVSFKGERI  123
             +++P++ AL++++   +  L   ++ LG+++IV T+ + + QVG ++A+KA++FK+E+I
Sbjct  62   LVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEHI  121

Query  124  NPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQYAPSFGYLTHCGSRCALPVFST  183
            NP+ N KQ+FSL+SV EL KS LKV +L+LIF++++  YA++F  L  CG  C++ V S+
Sbjct  122  NPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVSS  181

Query  184  LMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREYKDSNGDPHIKQKRRQLQ  243
            L+ WL  +++  Y+V +++DY+FQ Y I K+LKMS D+VK+E KD +GDP++K +RR++Q
Sbjct  182  LIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREMQ  241

Query  244  HEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLAEQS  303
             E+QSGS+A +V++S AVVRNPTH+AVCL YHP + P+P V+EKG D QA  IV++AE++
Sbjct  242  SEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAERN  301

Query  304  GIPVVENIALARALHRDVACGDTIPEQFFEPVAALLRMALELDYQPSSDDP  354
             IPVVEN+ LAR+L  +V  GD IPE +FEPVAALLRM + +DY  S++ P
Sbjct  302  CIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

55) YPN_3394 in NC_008149


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  263 bits (983),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 168/351 (48%), Positives = 261/351 (75%), Gaps = 0/351 (0%)

Query  3    TEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSSII  62
            +EK E+PT K+L++++  GQVVKS+EITS  QL+AL +YF +    ++      I  ++ 
Sbjct  2    SEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQ  61

Query  63   QLQQPLTLALARIGAECMTVLMHivvvlggalivvtiiAGIAQVGPLLATKAVSFKGERI  122
             +++P++ AL++++   +  L   ++ LG+++IV T+ + + QVG ++A+KA++FK+E+I
Sbjct  62   LVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEHI  121

Query  123  NPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQYAPSFGYLTHCGSRCALPVFST  182
            NP+ N KQ+FSL+SV EL KS LKV +L+LIF++++  YA++F  L  CG  C++ V S+
Sbjct  122  NPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVSS  181

Query  183  LMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREYKDSNGDPHIKQKRRQLQ  242
            L+ WL  +++  Y+V +++DY+FQ Y I K+LKMS D+VK+E KD +GDP++K +RR++Q
Sbjct  182  LIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREMQ  241

Query  243  HEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLAEQS  302
             E+QSGS+A +V++S AVVRNPTH+AVCL YHP + P+P V+EKG D QA  IV++AE++
Sbjct  242  SEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAERN  301

Query  303  GIPVVENIALARALHRDVACGDTIPEQFFEPVAALLRMALELDYQPSSDDP  353
             IPVVEN+ LAR+L  +V  GD IPE +FEPVAALLRM + +DY  S++ P
Sbjct  302  CIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

56) YPDSF_3697 in NC_009381


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  263 bits (983),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 168/351 (48%), Positives = 261/351 (75%), Gaps = 0/351 (0%)

Query  3    TEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSSII  62
            +EK E+PT K+L++++  GQVVKS+EITS  QL+AL +YF +    ++      I  ++ 
Sbjct  2    SEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQ  61

Query  63   QLQQPLTLALARIGAECMTVLMHivvvlggalivvtiiAGIAQVGPLLATKAVSFKGERI  122
             +++P++ AL++++   +  L   ++ LG+++IV T+ + + QVG ++A+KA++FK+E+I
Sbjct  62   LVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEHI  121

Query  123  NPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQYAPSFGYLTHCGSRCALPVFST  182
            NP+ N KQ+FSL+SV EL KS LKV +L+LIF++++  YA++F  L  CG  C++ V S+
Sbjct  122  NPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVSS  181

Query  183  LMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREYKDSNGDPHIKQKRRQLQ  242
            L+ WL  +++  Y+V +++DY+FQ Y I K+LKMS D+VK+E KD +GDP++K +RR++Q
Sbjct  182  LIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREMQ  241

Query  243  HEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLAEQS  302
             E+QSGS+A +V++S AVVRNPTH+AVCL YHP + P+P V+EKG D QA  IV++AE++
Sbjct  242  SEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAERN  301

Query  303  GIPVVENIALARALHRDVACGDTIPEQFFEPVAALLRMALELDYQPSSDDP  353
             IPVVEN+ LAR+L  +V  GD IPE +FEPVAALLRM + +DY  S++ P
Sbjct  302  CIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

57) YPZ3_0235 in NC_014029


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  263 bits (983),  Expect = 1e-71, Method: Compositional matrix adjust.
 Identities = 168/351 (48%), Positives = 261/351 (75%), Gaps = 0/351 (0%)

Query  3    TEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSSII  62
            +EK E+PT K+L++++  GQVVKS+EITS  QL+AL +YF +    ++      I  ++ 
Sbjct  2    SEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTLQ  61

Query  63   QLQQPLTLALARIGAECMTVLMHivvvlggalivvtiiAGIAQVGPLLATKAVSFKGERI  122
             +++P++ AL++++   +  L   ++ LG+++IV T+ + + QVG ++A+KA++FK+E+I
Sbjct  62   LVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEHI  121

Query  123  NPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQYAPSFGYLTHCGSRCALPVFST  182
            NP+ N KQ+FSL+SV EL KS LKV +L+LIF++++  YA++F  L  CG  C++ V S+
Sbjct  122  NPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVSS  181

Query  183  LMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREYKDSNGDPHIKQKRRQLQ  242
            L+ WL  +++  Y+V +++DY+FQ Y I K+LKMS D+VK+E KD +GDP++K +RR++Q
Sbjct  182  LIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREMQ  241

Query  243  HEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLAEQS  302
             E+QSGS+A +V++S AVVRNPTH+AVCL YHP + P+P V+EKG D QA  IV++AE++
Sbjct  242  SEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAERN  301

Query  303  GIPVVENIALARALHRDVACGDTIPEQFFEPVAALLRMALELDYQPSSDDP  353
             IPVVEN+ LAR+L  +V  GD IPE +FEPVAALLRM + +DY  S++ P
Sbjct  302  CIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTETP  352

58) Sbal195_2281 in NC_009997


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  260 bits (971),  Expect = 1e-70, Method: Compositional matrix adjust.
 Identities = 162/350 (47%), Positives = 244/350 (70%), Gaps = 6/350 (1%)

Query  1    MAEKTEKPTEKRLREARNRGQVIKSAEIVTGLQMAIILGYFLYEGPALVQAIMALIDLTI  60
            M+EKTE+PTEK+LR++R+ GQV+KS EI + +Q+  +  YF +    ++  ++  I +T+
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   HAINLPLETAAEQIVGTFA---VLALRFLGGLTLVLVFTIVVGNLVQTGPVWAAESIMPS  117
            + +N P+  A  Q+  ++      AL FLG+  +V   + V + ++Q G V A+ +I   
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIV---ATVGSVFLQVGVVIASKAIGFK  117

Query  118  MDKLNVMNNAKQLISLKSLFELAKNLVKVTVLSLVFYYLLHRYVNAFQYLPLCGEACGIS  177
             + +N ++N KQ++SL S+ EL K+ +KV +LSL+F +++  Y ++F+ LP CG ACG+ 
Sbjct  118  SEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVL  177

Query  178  VISTMITWLWGSFLGCYLIFGIADYAFQRYSLMKELKMSKDDTKQEYKDSEGNPEMKQKR  237
            V+S++I WLW + +  Y++ GI DY+FQ Y + K+LKMSKDD KQE KD EG+P+MK +R
Sbjct  178  VVSSLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRR  237

Query  238  RETQREVASGSLASNVRKATVVVRNPTHIAVCLYYSEGETPLPKVLEKAEDHMALHIVAL  297
            RE Q E+ SGSLA +V+++  VVRNPTHIAVCL Y   + P+P+VLEK+ D  A  IV +
Sbjct  238  REMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNI  297

Query  298  AEKAGVPIVENIPLARALFKHVEAGDVIPESLFEPVAELLRLVMTISYDN  347
            AE+  +P+VEN+ LAR+LF +VE GD IPE+LFEPVA LLR+VM I Y +
Sbjct  298  AERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAH  347

59) Sbal678_2291 in NC_016901


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  260 bits (971),  Expect = 1e-70, Method: Compositional matrix adjust.
 Identities = 162/350 (47%), Positives = 244/350 (70%), Gaps = 6/350 (1%)

Query  1    MAEKTEKPTEKRLREARNRGQVIKSAEIVTGLQMAIILGYFLYEGPALVQAIMALIDLTI  60
            M+EKTE+PTEK+LR++R+ GQV+KS EI + +Q+  +  YF +    ++  ++  I +T+
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   HAINLPLETAAEQIVGTFA---VLALRFLGGLTLVLVFTIVVGNLVQTGPVWAAESIMPS  117
            + +N P+  A  Q+  ++      AL FLG+  +V   + V + ++Q G V A+ +I   
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIV---ATVGSVFLQVGVVIASKAIGFK  117

Query  118  MDKLNVMNNAKQLISLKSLFELAKNLVKVTVLSLVFYYLLHRYVNAFQYLPLCGEACGIS  177
             + +N ++N KQ++SL S+ EL K+ +KV +LSL+F +++  Y ++F+ LP CG ACG+ 
Sbjct  118  SEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVL  177

Query  178  VISTMITWLWGSFLGCYLIFGIADYAFQRYSLMKELKMSKDDTKQEYKDSEGNPEMKQKR  237
            V+S++I WLW + +  Y++ GI DY+FQ Y + K+LKMSKDD KQE KD EG+P+MK +R
Sbjct  178  VVSSLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRR  237

Query  238  RETQREVASGSLASNVRKATVVVRNPTHIAVCLYYSEGETPLPKVLEKAEDHMALHIVAL  297
            RE Q E+ SGSLA +V+++  VVRNPTHIAVCL Y   + P+P+VLEK+ D  A  IV +
Sbjct  238  REMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNI  297

Query  298  AEKAGVPIVENIPLARALFKHVEAGDVIPESLFEPVAELLRLVMTISYDN  347
            AE+  +P+VEN+ LAR+LF +VE GD IPE+LFEPVA LLR+VM I Y +
Sbjct  298  AERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAH  347

60) Sbal175_2388 in NC_017571


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  257 bits (961),  Expect = 7e-70, Method: Compositional matrix adjust.
 Identities = 160/351 (46%), Positives = 248/351 (71%), Gaps = 8/351 (2%)

Query  1    MAEKTEKPTEKRLREARNRGQVIKSAEIVTGLQMAIILGYFLYEGP----ALVQAIMALI  56
            M+EKTE+PTEK+LR++R+ GQV+KS EI + +Q+  +  YF +        L+++I   +
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  57   DLTINAINLPLETAAEQIVGTFAMLALRFLGGLTLVLVFTIVVGNLVQTGPVWATESIMP  116
            +L  ++++ +L   ++ ++ +++  AL FLG+  +V   + V + ++Q G V A+ +I  
Sbjct  61   QLVNKPFSYALTQLSHALIESLTS-ALLFLGAGVIV---ATVGSVFLQVGVVIASKAIGF  116

Query  117  SMNKLNVMNNAKQLISLKSLFELAKNLVKVTVLSLVFYYLLHRYVNAFQYLPLCGEACGI  176
              + +N ++N KQ++SL S+ EL K+ +KV +LSL+F +++  Y ++F+ LP CG ACG+
Sbjct  117  KSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGV  176

Query  177  SVISTMITWLWGSFLGCYLIFGIADYAFQRYSLMKELKMSKDDTKQEYKDSEGNPEMKQK  236
             V+S++I WLW + +  Y++ GI DY+FQ Y + K+LKMSKDD KQE KD EG+P+MK +
Sbjct  177  LVVSSLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTR  236

Query  237  RRETQREVASGSLANNVRKATVVVRNPTHIAVCLYYCEGETPLPKVLEKAEDHMALHIVA  296
            RRE Q E+ SGSLA++V+++  VVRNPTHIAVCL Y   + P+P+VLEK+ D  A  IV 
Sbjct  237  RREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVN  296

Query  297  LAEKAGVPIVENIPLARALFKHVETGDVIPESLFEPVAELLRLVMAISYDN  347
            +AE+  +P+VEN+ LAR+LF +VE GD IPE+LFEPVA LLR+VM I Y +
Sbjct  297  IAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAH  347

61) Sbal117_2093 in NC_017579


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  254 bits (950),  Expect = 5e-69, Method: Compositional matrix adjust.
 Identities = 161/350 (46%), Positives = 243/350 (70%), Gaps = 6/350 (1%)

Query  1    MAEKTEKPTEKRLREARNRGQVIKSAEIVTGLQMAIILGYFLYEGPALVQAMMALIDLTI  60
            M+EKTE+PTEK+LR++R+ GQV+KS EI + +Q+  +  YF +    ++  ++  I +T+
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   NAINLPLETAAEQIVGTFA---MLALRFLGGLTLVLVFTIVVGNSVQTGPVWATESIMPS  117
            + +N P+  A  Q+  ++      AL FLG+  +V   + V +  +Q G V A+ +I   
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIV---ATVGSVFLQVGVVIASKAIGFK  117

Query  118  MNKLNVMNNAKQLISLKSLFELAKNLVKVTVLSLVFYYLLHRYVNAFQYLPLCEEACGIS  177
             + +N ++N KQ++SL S+ EL K+ +KV +LSL+F +++  Y ++F+ LP C  ACG+ 
Sbjct  118  SEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVL  177

Query  178  VISTMITWLWGSFLGCYLIFGIADYAFQRYSLMKELKMSKDDTKQEYKDSEGNPEMKQKR  237
            V+S++I WLW + +  Y++ GI DY+FQ Y + K+LKMSKDD KQE KD EG+P+MK +R
Sbjct  178  VVSSLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRR  237

Query  238  RETQREVASGSLANNVRKATVVVRNPTHIAVCLYYCEGETPLPKVLEKAEDHMALHIVAL  297
            RE Q E+ SGSLA++V+++  VVRNPTHIAVCL Y   + P+P+VLEK+ D  A  IV +
Sbjct  238  REMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNI  297

Query  298  AEKAGVPIVENIPLARALFKHVETGDVIPESLFEPVAELLRLVMAISYDN  347
            AE+  +P+VEN+ LAR+LF +VE GD IPE+LFEPVA LLR+VM I Y +
Sbjct  298  AERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAH  347

62) Sbal_1977 in NC_009052


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  254 bits (950),  Expect = 5e-69, Method: Compositional matrix adjust.
 Identities = 161/350 (46%), Positives = 243/350 (70%), Gaps = 6/350 (1%)

Query  1    MAEKTEKPTEKRLREARNRGQVIKSAEIVTGLQMAIILGYFLYEGPALVQAMMALIDLTI  60
            M+EKTE+PTEK+LR++R+ GQV+KS EI + +Q+  +  YF +    ++  ++  I +T+
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   NAINLPLETAAEQIVGTFA---MLALRFLGGLTLVLVFTIVVGNSVQTGPVWATESIMPS  117
            + +N P+  A  Q+  ++      AL FLG+  +V   + V +  +Q G V A+ +I   
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIV---ATVGSVFLQVGVVIASKAIGFK  117

Query  118  MNKLNVMNNAKQLISLKSLFELAKNLVKVTVLSLVFYYLLHRYVNAFQYLPLCEEACGIS  177
             + +N ++N KQ++SL S+ EL K+ +KV +LSL+F +++  Y ++F+ LP C  ACG+ 
Sbjct  118  SEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVL  177

Query  178  VISTMITWLWGSFLGCYLIFGIADYAFQRYSLMKELKMSKDDTKQEYKDSEGNPEMKQKR  237
            V+S++I WLW + +  Y++ GI DY+FQ Y + K+LKMSKDD KQE KD EG+P+MK +R
Sbjct  178  VVSSLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRR  237

Query  238  RETQREVASGSLANNVRKATVVVRNPTHIAVCLYYCEGETPLPKVLEKAEDHMALHIVAL  297
            RE Q E+ SGSLA++V+++  VVRNPTHIAVCL Y   + P+P+VLEK+ D  A  IV +
Sbjct  238  REMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNI  297

Query  298  AEKAGVPIVENIPLARALFKHVETGDVIPESLFEPVAELLRLVMAISYDN  347
            AE+  +P+VEN+ LAR+LF +VE GD IPE+LFEPVA LLR+VM I Y +
Sbjct  298  AERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAH  347

63) escU in NC_005085


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  249 bits (929),  Expect = 2e-67, Method: Compositional matrix adjust.
 Identities = 160/353 (46%), Positives = 251/353 (72%), Gaps = 6/353 (1%)

Query  1    MSEKTEKPTPKKIRDARNKGQVAKSTEITSGVQLAVLLAYFCFEGPHLLQALQGMLNVAI  60
            MSEKTE+PT KK+RD+R+ GQV KS EITS  QL  L  YF F    ++  L   +  ++
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   SVVNQDLVFGINQLTGAFLEL---AMRFLGGIAALVIIMTIAAVIAQIGPLLATEALKPS  117
             +VN+ + +++ QL+ A++E    A+ FLG+    VI+ T+++V+ Q+G ++A+ A+   
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAG---VIVATVGSVFLQVGVVIASKAIGFK  117

Query  118  LEKLNPVSNLKQMFSMRSLFEFMKSIFKVTILSLIFFYLLRQYSPSIQFLPLSDVATGMR  177
             E +NPVSN+KQ+FS++S+ E+ KS +KV +LSLIF +++  Y+++++ LP  ++A G+ 
Sbjct  118  SEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVL  177

Query  178  VSTQLLFWMWASLIGFYIIFGIADFAFQRYNTTKQLMMSLEDIKQEFKNSEGNPEIKQKR  237
            V + L+ W+W +++ FYI+ GI D++FQ Y+  K+L MS +D+KQE K+ EG+P++K +R
Sbjct  178  VVSSLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRR  237

Query  238  KEAHREIQSGSLADNVSKSTAVVRNPTHIAVCLRYQPGETPLPQVTAVGRDAMALHIVKL  297
            +E + EIQSGSLA++V +S AVVRNPTHIAVCL Y+P + P+P+V   G DA A  IV++
Sbjct  238  REMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNI  297

Query  298  AEKAGIPVVENIEVARALAAKTKIGGYISAELFEPVAQILRLAMNINYDDEDD  350
            AE+  IPVVEN+E+AR+L      G+ I+  LFEPVA +LR+ M+I+Y +  +
Sbjct  298  AERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAHSTE  350

64) SVI_2227 in NC_014012


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  244 bits (909),  Expect = 9e-66, Method: Compositional matrix adjust.
 Identities = 152/351 (44%), Positives = 244/351 (70%), Gaps = 8/351 (2%)

Query  1    MAEKTEKPTEKQLKEARNRGQVIKSPEIVTGLQMAIILGYFLFEGQN----LMQSIMYLI  56
            M+EKTE+PTEK+L+++R+ GQV+KS EI + +Q+  +  YF F  ++    L++SI + +
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  57   NSTIDAINLPLETAANQILDRFAMVALRFLGGLALVLICTIIVGNIAQTGPVWAAESLKP  116
            +    +++ +L   ++ +++ ++  AL FLG+    +I + + + + Q G V A+ ++  
Sbjct  61   QLVNKPFSYALTQLSHALIESLT-SALLFLGA---GVIVATVGSVFLQVGVVIASKAIGF  116

Query  117  SMNKLNVVNNAKQMISWKSVFELVKNLVKVTVLCLVFYYLLHRYVNSFQYLPLCGEECGI  176
              + +N V+N KQ++S  SV EL K+ +KV +L L+F +++  Y ++F+ LP CG  CG+
Sbjct  117  KSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGV  176

Query  177  EVISTLITWLWGCFLGCYVFFGVADYAFQRFNLMKELKMSKDDIKQEYKDSEGNPEVKQK  236
             V+S+LI WLW   +  Y+  G+ DY+FQ +++ K+LKMSKDD+KQE KD EG+P++K +
Sbjct  177  LVVSSLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTR  236

Query  237  RREIQREVASGSLATNVKKSSVVVRNPTHLAICLYYQAGETPLPMVLEKAEDHMALHIVG  296
            RRE+Q E+ SGSLA +VK+S  VVRNPTH+A+CL Y++ + P+P VLEK+ D  A  IV 
Sbjct  237  RREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVN  296

Query  297  MAEKAGIPVVENIPLARAIYSQIETGSPISEDLFEPVADLLRVVMAIPYDD  347
            +AE+  IPVVEN+ LAR+++ ++E G  I+E LFEPVA LLR+VM I Y +
Sbjct  297  IAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDYAH  347

65) escU in NC_021173


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  212 bits (787),  Expect = 4e-56, Method: Compositional matrix adjust.
 Identities = 152/343 (45%), Positives = 231/343 (68%), Gaps = 0/343 (0%)

Query  1    MSEKTEQPTAKKRADARRKGQVAKSVEITSGAQLAVLLGYFLFEGPHLMQAFETLTRASI  60
            MSEKTEQPT KK  D+R+ GQV KS+EITS  QL  L  YF F    ++  +      ++
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   DVINDDLVTALGHWLGVLGAVVTRFviglalvvigvtviavvaQIGPLLASEALKPSVDK  120
            +++N  +  AL +    L   +T  ++ L+  VI  TV +V  Q+G ++AS A+    + 
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVFLQVGVVIASKAIGFKSEH  120

Query  121  INPINNAKQMFSMKSLFEFAKSLFKVGVLSLIFYYLIREYAPSLQFLPLCSVECGFAVSV  180
            INP++N KQ+FS+ S+ E+ KS +KV +LSLIF +++  YA++++ LP C++ CG  V  
Sbjct  121  INPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVVS  180

Query  181  RLLYWMWAALIGFYVLFGLADFAFQRYNTTKQLMMSIEDIKQEFKNSEGNPEMKHKRKEI  240
             L+ W+W +++ FY++ G+ D++FQ Y+  K+L MS +D+KQE K+ EG+P+MK +R+E+
Sbjct  181  SLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRREM  240

Query  241  HREVQSGSLASNVAKSTVVVRNPTHVAVCLYYDPIAAPLPEVVETGHGKRALHIVALAER  300
            + E+QSGSLA +V +S  VVRNPTH+AVCL Y+P   P+P V+E G + +A  IV +AER
Sbjct  241  QSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAER  300

Query  301  AGVPVVENVPvaralaarlavGQVIPPDLFEPVAHILRLVMHL  343
              +PVVENV +AR+L   +  G+ IP  LFEPVA +LR+VM +
Sbjct  301  NCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKI  343

66) ETAC_04240 in NC_020796


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  190 bits (705),  Expect = 1e-49, Method: Compositional matrix adjust.
 Identities = 143/335 (43%), Positives = 223/335 (67%), Gaps = 2/335 (0%)

Query  1    MSEKTEQPTAKRLRDAREEGQVAKSQDISATVQLAVILLWMVTEGPTLYAAIGGFIDATL  60
            MSEKTEQPT K+LRD+R EGQV KS +I++  QL  + L        +   +   I  TL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   ATLNLPLPDAIALLT-GKAAALVVRFVFSlaallavtliltglvETGFLFAPKAIMPSAE  119
              +N P++ A++ L+ +   +L   ++F L+A + V+ + + +++ G ++A+KAI   +E
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLF-LGAGVIVATVGSVFLQVGVVIASKAIGFKSE  119

Query  120  RINPLNNAKQMVSLLKLFELGKMVLKIVILGLTFTYFIRGYAASFAQLVRADAEAGLWVT  179
            +INP++N KQ+ SL  + EL K  LK+++L+L F++F+  YA++F  L   +   G+ V 
Sbjct  120  HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVV  179

Query  180  SKMTLWMWGILLLLTALFAVVDYSMQYRHLRKQLMMSHEDIKQEFKNAEGSPEIKQRRRE  239
            S +  W+W  ++++  + +++DYS QY  +RK+L MS +D+KQE K+ EG P++K RRRE
Sbjct  180  SSLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE  239

Query  240  LHREIQSGSLADsvssasvvvRNPTHIAVCLRYCEGETPLPQVVEYGRGARARHIVALAE  299
            ++ EIQSGSLA+SV  +  VVRNPTHIAVCL Y   + P+P+V+E G +A+A  IV +AE
Sbjct  240  MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE  299

Query  300  ARRIPVVENIPLARALIATTRPGDYVPEALFVAVA  334
               IPVVEN+ LAR+L+     GD +PE+LF +VA
Sbjct  300  RNCIPVVENVELARSLFFEVERGDKIPETLFEPVA  334

67) esaU in NC_013508


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  190 bits (705),  Expect = 1e-49, Method: Compositional matrix adjust.
 Identities = 143/335 (43%), Positives = 223/335 (67%), Gaps = 2/335 (0%)

Query  1    MSEKTEQPTAKRLRDAREEGQVAKSQDISATVQLAVILLWMVTEGPTLYAAIGGFIDATL  60
            MSEKTEQPT K+LRD+R EGQV KS +I++  QL  + L        +   +   I  TL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   ATLNLPLPDAIALLT-GKAAALVVRFVFSlaallavtliltglvETGFLFAPKAIMPSAE  119
              +N P++ A++ L+ +   +L   ++F L+A + V+ + + +++ G ++A+KAI   +E
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLF-LGAGVIVATVGSVFLQVGVVIASKAIGFKSE  119

Query  120  RINPLNNAKQMVSLLKLFELGKMVLKIVILGLTFTYFIRGYAASFAQLVRADAEAGLWVT  179
            +INP++N KQ+ SL  + EL K  LK+++L+L F++F+  YA++F  L   +   G+ V 
Sbjct  120  HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVV  179

Query  180  SKMTLWMWGILLLLTALFAVVDYSMQYRHLRKQLMMSHEDIKQEFKNAEGSPEIKQRRRE  239
            S +  W+W  ++++  + +++DYS QY  +RK+L MS +D+KQE K+ EG P++K RRRE
Sbjct  180  SSLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE  239

Query  240  LHREIQSGSLADsvssasvvvRNPTHIAVCLRYCEGETPLPQVVEYGRGARARHIVALAE  299
            ++ EIQSGSLA+SV  +  VVRNPTHIAVCL Y   + P+P+V+E G +A+A  IV +AE
Sbjct  240  MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE  299

Query  300  ARRIPVVENIPLARALIATTRPGDYVPEALFVAVA  334
               IPVVEN+ LAR+L+     GD +PE+LF +VA
Sbjct  300  RNCIPVVENVELARSLFFEVERGDKIPETLFEPVA  334

68) esaU in NC_017309


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  190 bits (705),  Expect = 1e-49, Method: Compositional matrix adjust.
 Identities = 143/335 (43%), Positives = 223/335 (67%), Gaps = 2/335 (0%)

Query  1    MSEKTEQPTAKRLRDAREEGQVAKSQDISATVQLAVILLWMVTEGPTLYAAIGGFIDATL  60
            MSEKTEQPT K+LRD+R EGQV KS +I++  QL  + L        +   +   I  TL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   ATLNLPLPDAIALLT-GKAAALVVRFVFSlaallavtliltglvETGFLFAPKAIMPSAE  119
              +N P++ A++ L+ +   +L   ++F L+A + V+ + + +++ G ++A+KAI   +E
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLF-LGAGVIVATVGSVFLQVGVVIASKAIGFKSE  119

Query  120  RINPLNNAKQMVSLLKLFELGKMVLKIVILGLTFTYFIRGYAASFAQLVRADAEAGLWVT  179
            +INP++N KQ+ SL  + EL K  LK+++L+L F++F+  YA++F  L   +   G+ V 
Sbjct  120  HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVV  179

Query  180  SKMTLWMWGILLLLTALFAVVDYSMQYRHLRKQLMMSHEDIKQEFKNAEGSPEIKQRRRE  239
            S +  W+W  ++++  + +++DYS QY  +RK+L MS +D+KQE K+ EG P++K RRRE
Sbjct  180  SSLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE  239

Query  240  LHREIQSGSLADsvssasvvvRNPTHIAVCLRYCEGETPLPQVVEYGRGARARHIVALAE  299
            ++ EIQSGSLA+SV  +  VVRNPTHIAVCL Y   + P+P+V+E G +A+A  IV +AE
Sbjct  240  MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE  299

Query  300  ARRIPVVENIPLARALIATTRPGDYVPEALFVAVA  334
               IPVVEN+ LAR+L+     GD +PE+LF +VA
Sbjct  300  RNCIPVVENVELARSLFFEVERGDKIPETLFEPVA  334

69) NT01EI_0963 in NC_012779


> NC_003197_P2|44|G44|16764772|NP_460387.1|Salmonella_typhimurium_LT2|+|38692..39750|ssaU|STM1422|secretion 
system apparatus 
protein SsaU
Length=352

 Score =  173 bits (640),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 151/341 (45%), Positives = 228/341 (67%), Gaps = 2/341 (0%)

Query  1    MSEKTEQPTDKRLRDAREEGQVAKSQDIGATVQLAVILLWMVTEGPRMYAAIGGFIDATL  60
            MSEKTEQPT+K+LRD+R EGQV KS +I +  QL  + L       +M   +   I  TL
Sbjct  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60

Query  61   ATVNLPLLDAMTLLTGE-AATLMIRFVFGLAMllivtliltglvetgFLFAPKAIMPSAE  119
              VN P+  A+T L+     +L   ++F L+  +IV+ + + +++ G ++A+KAI   +E
Sbjct  61   QLVNKPFSYALTQLSHALIESLTSALLF-LGAGVIVATVGSVFLQVGVVIASKAIGFKSE  119

Query  120  RISPLSNAKQMVSLLKLFELGKMILKIVILGLTFTYFIRSYAESFAQLVRADAEAGLWVT  179
            +I+P+SN KQ+ SL  + EL K  LK+++L+L F++F+  YA +F  L   +   G+ V 
Sbjct  120  HINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYYASTFRALPYCGLACGVLVV  179

Query  180  SKMilwlwgillllTALFAVVDYSMQYRHLRKQLMMSREDIKQEFKNSEGSPEIKQRRRE  239
            S +I WLW  ++++  + +++DYS QY  +RK+L MS++D+KQE K+ EG P++K RRRE
Sbjct  180  SSLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTRRRE  239

Query  240  LHREIQSGsladsvasasvvvRNPTHIAVCLRYCEGETPLPQVVEYGRGARAQHIVTLAE  299
            ++ EIQSGSLA+SV  +  VVRNPTHIAVCL Y   + P+P+V+E G +A+A+ IV +AE
Sbjct  240  MQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVNIAE  299

Query  300  ALRIPVVENIPLARALIATTRPGDYVPEELFAAVAQLLRLL  340
               IPVVEN+ LAR+L+     GD +PE LF +VA LLR++
Sbjct  300  RNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMV  340