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Homologs of polA gene of NC_007793_P4

104

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) polA
( YP_494120.1 )

phage related DNA polymerase family A

NC_007793
(Staphylococcus aureus FPR3757)

0.0

100

2) SAA6159_01398
( YP_005739544.1 )

bacterophage DNA-directed DNA polymerase

NC_017338
(Staphylococcus aureus JKD6159)

0.0

100

3) MW1425
( NP_646242.1 )

DNA polymerase

NC_003923
(Staphylococcus aureus MW2)

0.0

100

4) USA300HOU_1473
( YP_001575361.1 )

bacterophage DNA-directed DNA polymerase

NC_010079
(Staphylococcus aureus TCH1516)

0.0

100

5) SAR1541
( YP_040943.1 )

DNA polymerase

NC_002952
(Staphylococcus aureus MRSA252)

0.0

6) SaurJH1_1058
( YP_001316201.1 )

DNA-directed DNA polymerase

NC_009632
(Staphylococcus aureus JH1)

0.0

7) SaurJH9_1039
( YP_001246416.1 )

DNA-directed DNA polymerase

NC_009487
(Staphylococcus aureus JH9)

0.0

8) C248_0331
( YP_006709092.1 )

DNA polymerase

NC_018608
(Staphylococcus aureus 08BA02176)

0.0

9) CA347_1467
( YP_008128325.1 )

DNA polymerase A family protein

NC_021554
(Staphylococcus aureus CA-347)

0.0

10) BN843_14760
( YP_007868541.1 )

DNA polymerase I

NC_021059
(Staphylococcus aureus M1)

0.0

11) SAPIG0351
( YP_005733161.1 )

DNA polymerase

NC_017333
(Staphylococcus aureus ST398)

0.0

12) SAPIG1540
( YP_005734336.1 )

DNA polymerase

NC_017333
(Staphylococcus aureus ST398)

0.0

13) MS7_1489
( YP_005757930.1 )

DNA polymerase A family protein

NC_017351
(Staphylococcus aureus 11819-97)

0.0

14) SAS0909
( YP_043035.1 )

DNA polymerase

NC_002953
(Staphylococcus aureus MSSA476)

0.0

15) HMPREF0772_11672
( YP_005747754.1 )

bacterophage DNA-directed DNA polymerase

NC_017342
(Staphylococcus aureus TCH60)

0.0

16) SABB_00399
( YP_008168637.1 )

putative phage-encoded DNA polymerase

NC_021670
(Staphylococcus aureus Bmb9393)

0.0

17) SAOUHSC_01563
( YP_500079.1 )

phage encoded DNA polymerase I

NC_007795
(Staphylococcus aureus NCTC 8325)

0.0

18) SAEMRSA15_13920
( YP_006237736.1 )

putative DNA polymerase

NC_017763
(Staphylococcus aureus HO 5096 0412)

0.0

19) polL
( YP_005547133.1 )

DNA-dependent DNA polymerase, family A

NC_017190
(Bacillus amyloliquefaciens LL3)

2e-167

20) polL
( YP_003921691.1 )

DNA-dependent DNA polymerase, family A

NC_014551
(Bacillus amyloliquefaciens DSM 7)

7e-167

21) Dred_1191
( YP_001112550.1 )

DNA-directed DNA polymerase

NC_009253
(Desulfotomaculum reducens MI-1)

1e-165

22) STP_0865
( YP_004478985.1 )

polymerase

NC_015558
(Streptococcus parauberis KCTC 11537)

2e-163

23) Ccel_3062
( YP_002507334.1 )

DNA-directed DNA polymerase

NC_011898
(Clostridium cellulolyticum H10)

2e-163

24) TepRe1_2443
( YP_004461851.1 )

DNA-directed DNA polymerase

NC_015519
(Tepidanaerobacter acetatoxydans Re1)

2e-159

25) L
( YP_007273470.1 )

DNA polymerase

NC_019954
(Tepidanaerobacter acetatoxydans Re1)

2e-159

26) Desru_1077
( YP_004544638.1 )

DNA-directed DNA polymerase

NC_015589
(Desulfotomaculum ruminis DSM 2154)

3e-159

27) polA.2
( YP_006933520.1 )

DNA polymerase A family protein

NC_018936
(Streptococcus pyogenes A20)

3e-158

28) M1GAS476_1529
( YP_007588043.1 )

phage-encoded DNA polymerase

NC_020540
(Streptococcus pyogenes M1 476)

3e-158

29) MGAS2096_Spy1476
( YP_601072.1 )

phage-related DNA polymerase

NC_008023
(Streptococcus pyogenes MGAS2096)

3e-158

30) M5005_Spy_1450
( YP_282813.1 )

phage-encoded DNA polymerase

NC_007297
(Streptococcus pyogenes MGAS5005)

3e-158

31) MGAS9429_Spy1452
( YP_597183.1 )

phage-related DNA polymerase

NC_008021
(Streptococcus pyogenes MGAS9429)

6e-158

32) SEQ_2073
( YP_002747288.1 )

phage DNA polymerase

NC_012471
(Streptococcus equi 4047)

2e-157

33) SpyM51055
( YP_001128604.1 )

phage DNA polymerase

NC_009332
(Streptococcus pyogenes Manfredo)

2e-157

34) Spy49_0762
( YP_002285770.1 )

DNA polymerase

NC_011375
(Streptococcus pyogenes NZ131)

2e-157

35) lmo4a_0076
( YP_005925067.1 )

phage-related DNA polymerase family protein

NC_017529
(Listeria monocytogenes L99)

9e-157

36) M6_Spy0034
( YP_059352.1 )

phage-related DNA polymerase

NC_006086
(Streptococcus pyogenes MGAS10394)

3e-156

37) polA.2
( NP_665247.1 )

DNA polymerase A domain-containing protein

NC_004070
(Streptococcus pyogenes MGAS315)

3e-156

38) SPs0422
( NP_801684.1 )

DNA polymerase

NC_004606
(Streptococcus pyogenes SSI-1)

3e-156

39) CDR20291_1424
( YP_003217921.1 )

dna-directed dna polymerase i

NC_013316
(Clostridium difficile R20291)

2e-155

40) polA-1
( YP_001391676.1 )

DNA-directed DNA polymerase I

NC_009699
(Clostridium botulinum Langeland)

2e-155

41) Desru_3570
( YP_004547059.1 )

DNA-directed DNA polymerase

NC_015589
(Desulfotomaculum ruminis DSM 2154)

2e-154

42) Bsel_3024
( YP_003701071.1 )

DNA-directed DNA polymerase

NC_014219
(Bacillus selenitireducens MLS10)

1e-152

43) Clocel_0761
( YP_003842295.1 )

DNA-directed DNA polymerase

NC_014393
(Clostridium cellulovorans 743B)

5e-153

44) CLM_2673
( YP_002804824.1 )

DNA polymerase

NC_012563
(Clostridium botulinum Kyoto)

8e-153

45) Bsel_0771
( YP_003698866.1 )

DNA-directed DNA polymerase

NC_014219
(Bacillus selenitireducens MLS10)

6e-152

46) CD196_1449
( YP_003214477.1 )

dna-directed dna polymerase i

NC_013315
(Clostridium difficile CD196)

2e-151

47) Thet_1675
( YP_003904548.1 )

DNA-directed DNA polymerase

NC_014538
(Thermoanaerobacter sp. X513)

3e-151

48) Teth514_1234
( YP_001662864.1 )

DNA-directed DNA polymerase

NC_010320
(Thermoanaerobacter sp. X514)

3e-151

49) CKL_2661
( YP_001396044.1 )

Phage-related DNA polymerase

NC_009706
(Clostridium kluyveri DSM 555)

4e-151

50) CKR_2359
( YP_002472824.1 )

hypothetical protein

NC_011837
(Clostridium kluyveri NBRC 12016)

4e-151

51) DET1100
( YP_181815.1 )

family A DNA-dependent DNA polymerase

NC_002936
(Dehalococcoides ethenogenes 195)

4e-151

52) LGAS_1473
( YP_815268.1 )

DNA polymerase I

NC_008530
(Lactobacillus gasseri ATCC 33323)

7e-151

53) BCE_0377
( NP_976705.1 )

DNA polymerase I

NC_003909
(Bacillus cereus ATCC 10987)

3e-150

54) DET0074
( YP_180826.1 )

family A DNA-dependent DNA polymerase

NC_002936
(Dehalococcoides ethenogenes 195)

7e-149

55) Acfer_1131
( YP_003398813.1 )

DNA-directed DNA polymerase

NC_013740
(Acidaminococcus fermentans DSM 20731)

7e-149

56) SpiGrapes_2854
( YP_005063617.1 )

DNA polymerase I family protein

NC_016633
(Sphaerochaeta pleomorpha Grapes)

1e-148

57) CLJU_c36550
( YP_003781798.1 )

phage related DNA polymerase

NC_014328
(Clostridium ljungdahlii ATCC 49587)

2e-148

58) HMPREF0538_20519
( YP_004649021.1 )

prophage LambdaSa04 DNA-directed DNA polymerase

NC_015697
(Lactobacillus reuteri SD2112)

2e-148

59) HMPREF0538_20474
( YP_004648976.1 )

prophage LambdaSa04 DNA-directed DNA polymerase

NC_015697
(Lactobacillus reuteri SD2112)

3e-148

60) CLJU_c03390
( YP_003778523.1 )

phage related DNA polymerase

NC_014328
(Clostridium ljungdahlii ATCC 49587)

6e-148

61) Acin_1361
( YP_004896724.1 )

DNA polymerase I

NC_016077
(Acidaminococcus intestini RyC-MR95)

1e-147

62) Acin_1997
( YP_004897344.1 )

DNA polymerase I

NC_016077
(Acidaminococcus intestini RyC-MR95)

2e-147

63) M643_03765
( YP_008280320.1 )

XRE family transcriptional regulator

NC_021826
(Listeria monocytogenes N1-011A)

3e-147

64) LMOSLCC2755_1750
( YP_006682200.1 )

phage-related DNA polymerase

NC_018587
(Listeria monocytogenes SLCC2755)

3e-147

65) Mahau_2841
( YP_004464788.1 )

DNA-directed DNA polymerase

NC_015520
(Mahella australiensis 50-1 BON)

4e-147

66) Clocel_4001
( YP_003845428.1 )

DNA-directed DNA polymerase

NC_014393
(Clostridium cellulovorans 743B)

2e-146

67) EF0325
( NP_814117.1 )

DNA polymerase

NC_004668
(Enterococcus faecalis V583)

3e-146

68) gp21
( YP_006536630.1 )

DNA polymerase

NC_018221
(Enterococcus faecalis D32)

4e-146

69) HMPREF0669_00204
( YP_008444309.1 )

hypothetical protein

NC_022111
(Prevotella sp. F0039)

1e-145

70) CL3_07160
( YP_007809418.1 )

DNA polymerase I-3'-5' exonuclease and polymerase domains

NC_021024
(butyrate-producing bacterium SM4/1)

2e-144

71) Clopa_0561
( YP_007939286.1 )

DNA polymerase I family protein with 3'-5'-exonuclease and polymerase domains

NC_021182
(Clostridium pasteurianum BC1)

7e-144

72) Acin_1878
( YP_004897227.1 )

DNA-directed DNA polymerase

NC_016077
(Acidaminococcus intestini RyC-MR95)

1e-143

73) EFAU004_01640
( YP_005354842.1 )

DNA polymerase I

NC_017022
(Enterococcus faecium Aus0004)

1e-143

74) ES1_04960
( YP_007839159.1 )

DNA polymerase I-3'-5' exonuclease and polymerase domains

NC_021043
(Eubacterium siraeum V10Sc8a)

3e-143

75) SeseC_00880
( YP_006042627.1 )

prophage LambdaSa04, DNA polymerase

NC_017582
(Streptococcus equi ATCC 35246)

4e-142

76) SSUJS14_0643
( YP_006076005.1 )

phage polymerase

NC_017618
(Streptococcus suis JS14)

8e-142

77) NJAUSS_0627
( YP_007570582.1 )

DNA polymerase

NC_020526
(Streptococcus suis SC070731)

8e-142

78) Ccel_2856
( YP_002507130.1 )

DNA-directed DNA polymerase

NC_011898
(Clostridium cellulolyticum H10)

2e-141

79) SFBM_0104
( YP_004770627.1 )

DNA-directed DNA polymerase

NC_015913
(Candidatus Arthromitus sp. mouse isolate)

5e-141

80) polA
( YP_001681456.1 )

DNA polymerase i

NC_010337
(Heliobacterium modesticaldum Ice1)

1e-139

81) HMPREF9231_0480
( YP_005837838.1 )

DNA-directed DNA polymerase domain protein

NC_017456
(Gardnerella vaginalis HMP9231)

9e-140

82) L
( YP_006905089.1 )

DNA polymerase bacteriophage-type

NC_019042
(Streptococcus dysgalactiae AC-2713)

2e-139

83) MOUSESFB_0097
( YP_005667815.1 )

DNA-directed DNA polymerase

NC_017294
(Candidatus Arthromitus sp. SFB-mouse-Yit)

1e-138

84) SAK_0725
( YP_329353.1 )

prophage LambdaSa04, DNA polymerase

NC_007432
(Streptococcus agalactiae A909)

7e-139

85) dpo
( YP_006763829.1 )

prophage LambdaSa04, DNA polymerase

NC_018646
(Streptococcus agalactiae GD201008-001)

7e-139

86) M6_Spy1155
( YP_060473.1 )

phage-related DNA polymerase

NC_006086
(Streptococcus pyogenes MGAS10394)

2e-138

87) CRES_0898
( YP_004605418.1 )

bacteriophage-type DNA polymerase

NC_015673
(Corynebacterium resistens DSM 45100)

2e-138

88) Ethha_1817
( YP_004092073.1 )

DNA-directed DNA polymerase

NC_014828
(Ethanoligenens harbinense YUAN-3)

3e-138

89) CDHC02_1666
( YP_005165446.1 )

bacteriophage-type DNA polymerase

NC_016802
(Corynebacterium diphtheriae HC02)

5e-137

90) L
( YP_006904953.1 )

DNA polymerase bacteriophage-type

NC_019042
(Streptococcus dysgalactiae AC-2713)

5e-137

91) Clo1100_3564
( YP_005149494.1 )

DNA polymerase I family protein

NC_016791
(Clostridium sp. BNL1100)

2e-136

92) CRES_1541
( YP_004606058.1 )

bacteriophage-type DNA polymerase

NC_015673
(Corynebacterium resistens DSM 45100)

2e-136

93) BSA_6830
( YP_008084335.1 )

FIG006036: phage encoded DNA polymerase I

NC_021485
(Streptococcus agalactiae 09mas018883)

3e-136

94) LMHCC_2586
( YP_002351535.1 )

DNA polymerase

NC_011660
(Listeria monocytogenes HCC23)

3e-131

95) LMM7_0078
( YP_005946142.1 )

DNA polymerase

NC_017537
(Listeria monocytogenes M7)

3e-131

96) btf_225
( YP_007484676.1 )

phage encoded DNA-directed DNA polymerase

NC_020387
(Dehalococcoides mccartyi BTF08)

1e-129

97) HMPREF0573_11260
( YP_003719073.1 )

DNA-directed DNA polymerase

NC_014246
(Mobiluncus curtisii ATCC 43063)

1e-129

98) Amet_4009
( YP_001321750.1 )

DNA-directed DNA polymerase

NC_009633
(Alkaliphilus metalliredigens QYMF)

2e-129

99) polA1
( YP_005710801.1 )

bacteriophage-type DNA polymerase

NC_017317
(Corynebacterium ulcerans 809)

3e-126

100) polA1
( YP_004629817.1 )

bacteriophage-type DNA polymerase

NC_015683
(Corynebacterium ulcerans BR-AD22)

3e-126

101) CULC0102_1300
( YP_006494734.1 )

putative DNA-directed DNA polymerase

NC_018101
(Corynebacterium ulcerans 0102)

4e-126

102) OBV_43170
( YP_004884021.1 )

putative DNA polymerase

NC_016048
(Oscillibacter valericigenes Sjm18-20)

8e-123

103) OBV_01840
( YP_004879888.1 )

putative DNA polymerase

NC_016048
(Oscillibacter valericigenes Sjm18-20)

9e-123

104) AXY_13930
( YP_006845287.1 )

DNA polymerase I

NC_018704
(Amphibacillus xylanus NBRC 15112)

1e-100

• Sequence Alignments

1) SAA6159_01398 in NC_017338


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score = 1015 bits (3847),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 650/650 (100%), Positives = 650/650 (100%), Gaps = 0/650 (0%)

Query  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60
            MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120
            FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  121  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  180
            RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA
Sbjct  121  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  180

Query  181  HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN  240
            HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN
Sbjct  181  HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN  240

Query  241  PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH  300
            PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH
Sbjct  241  PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH  300

Query  301  DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL  360
            DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL
Sbjct  301  DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL  360

Query  361  LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE  420
            LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE
Sbjct  361  LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE  420

Query  421  ASASQMFNVPVESITKGDPLRQKGKVSElalgyqggagalkamgalemgIEENELQGLVD  480
            ASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVD
Sbjct  421  ASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVD  480

Query  481  SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKAS  540
            SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKAS
Sbjct  481  SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKAS  540

Query  541  VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV  600
            VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV
Sbjct  541  VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV  600

Query  601  GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650
            GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD
Sbjct  601  GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

2) MW1425 in NC_003923


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score = 1015 bits (3846),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 650/650 (100%), Positives = 650/650 (100%), Gaps = 0/650 (0%)

Query  4    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  63
            MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  64   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  123
            FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  124  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  183
            RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA
Sbjct  121  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  180

Query  184  HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN  243
            HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN
Sbjct  181  HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN  240

Query  244  PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH  303
            PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH
Sbjct  241  PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH  300

Query  304  DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL  363
            DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL
Sbjct  301  DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL  360

Query  364  LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE  423
            LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE
Sbjct  361  LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE  420

Query  424  ASASQMFNVPVESITKGDPLRQKGKVSElalgyqggagalkamgalemgIEENELQGLVD  483
            ASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVD
Sbjct  421  ASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVD  480

Query  484  SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKAS  543
            SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKAS
Sbjct  481  SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKAS  540

Query  544  VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV  603
            VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV
Sbjct  541  VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV  600

Query  604  GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  653
            GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD
Sbjct  601  GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

3) polA in NC_007793


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score = 1015 bits (3847),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 650/650 (100%), Positives = 650/650 (100%), Gaps = 0/650 (0%)

Query  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60
            MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120
            FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  121  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  180
            RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA
Sbjct  121  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  180

Query  181  HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN  240
            HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN
Sbjct  181  HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN  240

Query  241  PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH  300
            PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH
Sbjct  241  PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH  300

Query  301  DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL  360
            DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL
Sbjct  301  DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL  360

Query  361  LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE  420
            LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE
Sbjct  361  LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE  420

Query  421  ASASQMFNVPVESITKGDPLRQKGKVSElalgyqggagalkamgalemgIEENELQGLVD  480
            ASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVD
Sbjct  421  ASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVD  480

Query  481  SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKAS  540
            SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKAS
Sbjct  481  SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKAS  540

Query  541  VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV  600
            VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV
Sbjct  541  VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV  600

Query  601  GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650
            GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD
Sbjct  601  GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

4) USA300HOU_1473 in NC_010079


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score = 1015 bits (3847),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 650/650 (100%), Positives = 650/650 (100%), Gaps = 0/650 (0%)

Query  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60
            MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120
            FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  121  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  180
            RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA
Sbjct  121  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  180

Query  181  HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN  240
            HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN
Sbjct  181  HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN  240

Query  241  PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH  300
            PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH
Sbjct  241  PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH  300

Query  301  DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL  360
            DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL
Sbjct  301  DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL  360

Query  361  LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE  420
            LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE
Sbjct  361  LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE  420

Query  421  ASASQMFNVPVESITKGDPLRQKGKVSElalgyqggagalkamgalemgIEENELQGLVD  480
            ASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVD
Sbjct  421  ASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVD  480

Query  481  SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKAS  540
            SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKAS
Sbjct  481  SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKAS  540

Query  541  VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV  600
            VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV
Sbjct  541  VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV  600

Query  601  GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650
            GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD
Sbjct  601  GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

5) SAR1541 in NC_002952


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score = 1013 bits (3840),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 647/650 (99%), Positives = 650/650 (100%), Gaps = 0/650 (0%)

Query  4    MNIDIETYSSNDISKCGAYKYTEAEEFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  63
            MNIDIETYSSNDISKCGAYKYTEAE+FEILIIAYSIDGGAISAIDMTKVDNEPFHADFET
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  64   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  123
            FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  124  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  183
            RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA
Sbjct  121  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  180

Query  184  HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN  243
            HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN
Sbjct  181  HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN  240

Query  244  PNSPTQLLAWLKNDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH  303
            PNSPTQLLAWLK+DQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH
Sbjct  241  PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH  300

Query  304  DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL  363
            DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL
Sbjct  301  DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL  360

Query  364  LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE  423
            LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE
Sbjct  361  LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE  420

Query  424  ASASQMFNVPVESITKGDPLRQKGKVSElalgyqggagalkamgalemgIEENELQGLVD  483
            ASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVD
Sbjct  421  ASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVD  480

Query  484  SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKAS  543
            SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHG+RFYMKKGFLMIELPSGRALAYPKAS
Sbjct  481  SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKAS  540

Query  544  VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV  603
            VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV
Sbjct  541  VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV  600

Query  604  GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  653
            GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD
Sbjct  601  GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

6) SaurJH1_1058 in NC_009632


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score = 1012 bits (3835),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 648/650 (99%), Positives = 650/650 (100%), Gaps = 0/650 (0%)

Query  4    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYET  63
            MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD+ET
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  64   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  123
            FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  124  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  183
            RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA
Sbjct  121  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  180

Query  184  HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN  243
            HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN
Sbjct  181  HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN  240

Query  244  PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH  303
            PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH
Sbjct  241  PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH  300

Query  304  DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL  363
            DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL
Sbjct  301  DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL  360

Query  364  LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE  423
            LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE
Sbjct  361  LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE  420

Query  424  ASASQMFNVPVESITKGDPLRQKGKVSElalgyqggagalkamgalemgIEENELQGLVD  483
            ASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVD
Sbjct  421  ASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVD  480

Query  484  SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKAS  543
            SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHG+RFYMKKGFLMIELPSGRALAYPKAS
Sbjct  481  SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKAS  540

Query  544  VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV  603
            VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV
Sbjct  541  VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV  600

Query  604  GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  653
            GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD
Sbjct  601  GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

7) SaurJH9_1039 in NC_009487


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score = 1012 bits (3835),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 648/650 (99%), Positives = 650/650 (100%), Gaps = 0/650 (0%)

Query  4    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYET  63
            MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD+ET
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  64   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  123
            FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  124  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  183
            RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA
Sbjct  121  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  180

Query  184  HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN  243
            HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN
Sbjct  181  HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN  240

Query  244  PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH  303
            PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH
Sbjct  241  PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH  300

Query  304  DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL  363
            DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL
Sbjct  301  DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL  360

Query  364  LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE  423
            LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE
Sbjct  361  LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE  420

Query  424  ASASQMFNVPVESITKGDPLRQKGKVSElalgyqggagalkamgalemgIEENELQGLVD  483
            ASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVD
Sbjct  421  ASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVD  480

Query  484  SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKAS  543
            SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHG+RFYMKKGFLMIELPSGRALAYPKAS
Sbjct  481  SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKAS  540

Query  544  VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV  603
            VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV
Sbjct  541  VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV  600

Query  604  GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  653
            GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD
Sbjct  601  GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

8) C248_0331 in NC_018608


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score = 1011 bits (3831),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 647/650 (99%), Positives = 649/650 (99%), Gaps = 0/650 (0%)

Query  4    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  63
            MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  64   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  123
            FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  124  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  183
            RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA
Sbjct  121  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  180

Query  184  HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN  243
            HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN
Sbjct  181  HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN  240

Query  244  PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH  303
            PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH
Sbjct  241  PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH  300

Query  304  DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL  363
            DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL
Sbjct  301  DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL  360

Query  364  LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE  423
            LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE
Sbjct  361  LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE  420

Query  424  ASASQMFNVPVESITKGDPLRQKGKVSElalgyqggagalkamgalemgIEENELQGLVD  483
            ASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVD
Sbjct  421  ASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVD  480

Query  484  SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKAS  543
            SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHG+RFYMKKGFLMIELPSGRALAYPKAS
Sbjct  481  SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKAS  540

Query  544  VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV  603
            VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV
Sbjct  541  VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV  600

Query  604  GHVHDEVIVEIPRGSNGLKEIETIMNKPVEWAEGLNLNSDGFTSPFYMKD  653
            GHVHDEVIVEIPRGSNGLKEIETIMNKPV+WA GLNLNSDGFTSPFYMKD
Sbjct  601  GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

9) CA347_1467 in NC_021554


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score = 1011 bits (3831),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 647/650 (99%), Positives = 649/650 (99%), Gaps = 0/650 (0%)

Query  4    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  63
            MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  64   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  123
            FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  124  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  183
            RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA
Sbjct  121  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  180

Query  184  HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN  243
            HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN
Sbjct  181  HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN  240

Query  244  PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH  303
            PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH
Sbjct  241  PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH  300

Query  304  DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL  363
            DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL
Sbjct  301  DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL  360

Query  364  LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE  423
            LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE
Sbjct  361  LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE  420

Query  424  ASASQMFNVPVESITKGDPLRQKGKVSElalgyqggagalkamgalemgIEENELQGLVD  483
            ASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVD
Sbjct  421  ASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVD  480

Query  484  SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKAS  543
            SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHG+RFYMKKGFLMIELPSGRALAYPKAS
Sbjct  481  SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKAS  540

Query  544  VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV  603
            VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV
Sbjct  541  VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV  600

Query  604  GHVHDEVIVEIPRGSNGLKEIETIMNKPVEWAEGLNLNSDGFTSPFYMKD  653
            GHVHDEVIVEIPRGSNGLKEIETIMNKPV+WA GLNLNSDGFTSPFYMKD
Sbjct  601  GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

10) BN843_14760 in NC_021059


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score = 1011 bits (3831),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 647/650 (99%), Positives = 649/650 (99%), Gaps = 0/650 (0%)

Query  4    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  63
            MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  64   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  123
            FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  124  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  183
            RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA
Sbjct  121  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  180

Query  184  HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN  243
            HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN
Sbjct  181  HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN  240

Query  244  PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH  303
            PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH
Sbjct  241  PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH  300

Query  304  DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL  363
            DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL
Sbjct  301  DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL  360

Query  364  LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE  423
            LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE
Sbjct  361  LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE  420

Query  424  ASASQMFNVPVESITKGDPLRQKGKVSElalgyqggagalkamgalemgIEENELQGLVD  483
            ASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVD
Sbjct  421  ASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVD  480

Query  484  SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKAS  543
            SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHG+RFYMKKGFLMIELPSGRALAYPKAS
Sbjct  481  SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKAS  540

Query  544  VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV  603
            VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV
Sbjct  541  VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV  600

Query  604  GHVHDEVIVEIPRGSNGLKEIETIMNKPVEWAEGLNLNSDGFTSPFYMKD  653
            GHVHDEVIVEIPRGSNGLKEIETIMNKPV+WA GLNLNSDGFTSPFYMKD
Sbjct  601  GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

11) SAPIG0351 in NC_017333


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score = 1008 bits (3822),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 640/650 (99%), Positives = 650/650 (100%), Gaps = 0/650 (0%)

Query  4    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHADYET  63
            MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGG+ISAIDMTKVDNEPFHAD+ET
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  64   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  123
            FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  124  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMAIA  183
            RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM+IA
Sbjct  121  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  180

Query  184  NKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITGLEN  243
            +KIKDFPVTAIEQ+YWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELL+QAKHITGLEN
Sbjct  181  HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN  240

Query  244  PNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKESTGKAKKMLEIRLQMSKTSVKKYNKMH  303
            PNSPTQLLAWLKD+QGLDIPNLQKKTVQ+YLKE+TGKAKKMLEIRLQMSKTSVKKYNKMH
Sbjct  241  PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH  300

Query  304  DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL  363
            DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL
Sbjct  301  DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL  360

Query  364  LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE  423
            LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE
Sbjct  361  LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE  420

Query  424  ASASQMFNVPVESITKGDPLRQKGKVSElalgyqggagalkamgalemgIEENELQGLVD  483
            ASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVD
Sbjct  421  ASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVD  480

Query  484  SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKAS  543
            SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHG+RFYMKKGFLMIELPSGRALAYPKAS
Sbjct  481  SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKAS  540

Query  544  VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV  603
            VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV
Sbjct  541  VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV  600

Query  604  GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  653
            GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD
Sbjct  601  GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

12) SAPIG1540 in NC_017333


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score = 1008 bits (3822),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 640/650 (99%), Positives = 650/650 (100%), Gaps = 0/650 (0%)

Query  4    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHADYET  63
            MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGG+ISAIDMTKVDNEPFHAD+ET
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  64   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  123
            FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  124  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMAIA  183
            RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM+IA
Sbjct  121  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  180

Query  184  NKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITGLEN  243
            +KIKDFPVTAIEQ+YWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELL+QAKHITGLEN
Sbjct  181  HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN  240

Query  244  PNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKESTGKAKKMLEIRLQMSKTSVKKYNKMH  303
            PNSPTQLLAWLKD+QGLDIPNLQKKTVQ+YLKE+TGKAKKMLEIRLQMSKTSVKKYNKMH
Sbjct  241  PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH  300

Query  304  DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL  363
            DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL
Sbjct  301  DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL  360

Query  364  LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE  423
            LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE
Sbjct  361  LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE  420

Query  424  ASASQMFNVPVESITKGDPLRQKGKVSElalgyqggagalkamgalemgIEENELQGLVD  483
            ASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVD
Sbjct  421  ASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVD  480

Query  484  SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKAS  543
            SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHG+RFYMKKGFLMIELPSGRALAYPKAS
Sbjct  481  SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKAS  540

Query  544  VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV  603
            VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV
Sbjct  541  VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV  600

Query  604  GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  653
            GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD
Sbjct  601  GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

13) MS7_1489 in NC_017351


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score = 1004 bits (3807),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 640/650 (99%), Positives = 648/650 (99%), Gaps = 0/650 (0%)

Query  4    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYET  63
            MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD+ET
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  64   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  123
            FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  124  RLQSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMAIA  183
            RLQ+QKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM+IA
Sbjct  121  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  180

Query  184  NKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITGLEN  243
            +KIKDFPVTAIEQ+YWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELL+QAKHITGLEN
Sbjct  181  HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN  240

Query  244  PNSPTQLLAWLKDEQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH  303
            PNSPTQLLAWLKD+QGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH
Sbjct  241  PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH  300

Query  304  DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL  363
            DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL
Sbjct  301  DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL  360

Query  364  LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE  423
            LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE
Sbjct  361  LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE  420

Query  424  ASASQMFNVPVESITKGDPLRQKGKVSElalgyqggagalkamgalemgIEENELQGLVD  483
            ASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVD
Sbjct  421  ASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVD  480

Query  484  SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKAL  543
            SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHG+RFYMKKGFLMIELPSGRALAYPKA 
Sbjct  481  SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKAS  540

Query  544  VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIV  603
            VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEA GFKIV
Sbjct  541  VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV  600

Query  604  GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  653
            GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD
Sbjct  601  GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

14) SAS0909 in NC_002953


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score = 1004 bits (3804),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 639/650 (99%), Positives = 648/650 (99%), Gaps = 0/650 (0%)

Query  4    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYET  63
            MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD+ET
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  64   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  123
            FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  124  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  183
            RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA
Sbjct  121  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  180

Query  184  NKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITGLEN  243
            +KIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELL+QAKHITGLEN
Sbjct  181  HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN  240

Query  244  PNSPTQLLAWLKAEQGLDIPNLQKKTVQDYLKRATGKAKKMLEIRLQMSKTSVKKYNKMH  303
            PNSPTQLLAWLK +QGLDIPNLQKKTVQ+YLK ATGKAKKMLEIRLQMSKTSVKKYNKMH
Sbjct  241  PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH  300

Query  304  DMMCNDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL  363
            DMMC+DERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL
Sbjct  301  DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL  360

Query  364  LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE  423
            LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE
Sbjct  361  LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE  420

Query  424  ASASQMFNVPVESITKGDPLRQKGKVSElalgyqggagalkamgalemgIEENELQGLVD  483
            ASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVD
Sbjct  421  ASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVD  480

Query  484  SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKAS  543
            SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHG+RFYMKKGFLMIELPSGRALAYPKAS
Sbjct  481  SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKAS  540

Query  544  VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV  603
            VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV
Sbjct  541  VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV  600

Query  604  GHVHDEVIVEIPKDSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  653
            GHVHDEVIVEIP++SNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD
Sbjct  601  GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

15) HMPREF0772_11672 in NC_017342


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score = 1004 bits (3807),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 640/650 (99%), Positives = 648/650 (99%), Gaps = 0/650 (0%)

Query  4    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYET  63
            MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD+ET
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  64   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  123
            FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  124  RLQSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMAIA  183
            RLQ+QKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM+IA
Sbjct  121  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  180

Query  184  NKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITGLEN  243
            +KIKDFPVTAIEQ+YWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELL+QAKHITGLEN
Sbjct  181  HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN  240

Query  244  PNSPTQLLAWLKDEQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH  303
            PNSPTQLLAWLKD+QGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH
Sbjct  241  PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH  300

Query  304  DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL  363
            DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL
Sbjct  301  DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL  360

Query  364  LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE  423
            LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE
Sbjct  361  LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE  420

Query  424  ASASQMFNVPVESITKGDPLRQKGKVSElalgyqggagalkamgalemgIEENELQGLVD  483
            ASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVD
Sbjct  421  ASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVD  480

Query  484  SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKAL  543
            SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHG+RFYMKKGFLMIELPSGRALAYPKA 
Sbjct  481  SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKAS  540

Query  544  VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIV  603
            VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEA GFKIV
Sbjct  541  VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV  600

Query  604  GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  653
            GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD
Sbjct  601  GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

16) SABB_00399 in NC_021670


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score = 1003 bits (3803),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 640/650 (99%), Positives = 648/650 (99%), Gaps = 0/650 (0%)

Query  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYET  60
            MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD+ET
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120
            FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  121  RLQSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMAIA  180
            RLQ+QKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM+IA
Sbjct  121  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  180

Query  181  NKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITGLEN  240
            +KIKDFPVTAIEQ+YWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELL+QAKHITGLEN
Sbjct  181  HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN  240

Query  241  PNSPTQLLAWLKDEQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH  300
            PNSPTQLLAWLKD+QGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH
Sbjct  241  PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH  300

Query  301  DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL  360
            DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL
Sbjct  301  DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL  360

Query  361  LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE  420
            LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE
Sbjct  361  LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE  420

Query  421  ASASQMFNVPVESITKGDPLRQKGKVSElalgyqggagalkamgalemgIEENELQGLVD  480
            ASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVD
Sbjct  421  ASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVD  480

Query  481  SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKAL  540
            SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHG+RFYMKKGFLMIELPSGRALAYPKA 
Sbjct  481  SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKAS  540

Query  541  VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIV  600
            VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEA GFKIV
Sbjct  541  VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV  600

Query  601  GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650
            GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD
Sbjct  601  GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

17) SAOUHSC_01563 in NC_007795


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score = 1003 bits (3803),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 640/650 (99%), Positives = 648/650 (99%), Gaps = 0/650 (0%)

Query  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYET  60
            MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD+ET
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120
            FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  121  RLQSQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMAIA  180
            RLQ+QKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEM+IA
Sbjct  121  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  180

Query  181  NKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITGLEN  240
            +KIKDFPVTAIEQ+YWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELL+QAKHITGLEN
Sbjct  181  HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN  240

Query  241  PNSPTQLLAWLKDEQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH  300
            PNSPTQLLAWLKD+QGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH
Sbjct  241  PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH  300

Query  301  DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL  360
            DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL
Sbjct  301  DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL  360

Query  361  LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE  420
            LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE
Sbjct  361  LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE  420

Query  421  ASASQMFNVPVESITKGDPLRQKGKVSElalgyqggagalkamgalemgIEENELQGLVD  480
            ASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVD
Sbjct  421  ASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVD  480

Query  481  SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKAL  540
            SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHG+RFYMKKGFLMIELPSGRALAYPKA 
Sbjct  481  SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKAS  540

Query  541  VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIV  600
            VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEA GFKIV
Sbjct  541  VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV  600

Query  601  GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650
            GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD
Sbjct  601  GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

18) SAEMRSA15_13920 in NC_017763


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score = 1000 bits (3791),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 638/650 (99%), Positives = 644/650 (99%), Gaps = 0/650 (0%)

Query  4    MNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDTEPFHADYET  63
            MNIDIETYSSNDISKCG YKYTEAEDFEILIIAYSIDGGAISAIDMTKVD EPFHAD+ET
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  64   FKIALFDPAVKKYAFNANFERTCLAKYFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  123
            FKIALFDPAVKKYAFNANFERTCLAK FNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  124  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  183
            RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA
Sbjct  121  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  180

Query  184  NKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITGLEN  243
            +KIKDFPVT IEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELL+QAKHITGLEN
Sbjct  181  HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN  240

Query  244  PNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKVATGKAKKMLEIRLQMSKTSVKKYNKMH  303
            PNSPTQLLAWLKD+QGLDIPNLQKKTVQ+YLK ATGKAKKMLEIRLQMSKTSVKKYNKMH
Sbjct  241  PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH  300

Query  304  DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL  363
            DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL
Sbjct  301  DMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL  360

Query  364  LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE  423
            LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE
Sbjct  361  LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE  420

Query  424  ASASQMFNVPVESITKGDPLRQKGKVSElalgyqggagalkamgalemgIEENELQGLVD  483
            ASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVD
Sbjct  421  ASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVD  480

Query  484  SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKAL  543
            SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHG+RFYMKKGFLMIELPSGRALAYPKA 
Sbjct  481  SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKAS  540

Query  544  VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV  603
            VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV
Sbjct  541  VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV  600

Query  604  GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  653
            GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD
Sbjct  601  GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

19) polL in NC_017190


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  583 bits (2200),  Expect = 2e-167, Method: Compositional matrix adjust.
 Identities = 346/654 (53%), Positives = 472/654 (73%), Gaps = 13/654 (1%)

Query  4    LSIDIETFSSVDLLKCGVYAYTEAPDFEILLFAYAFDEEPIKVIDLAQGEALPHEV----  59
            ++IDIET+SS D+ KCG Y YTEA DFEIL++AY++D  +I  ID+++ +  P +     
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  60   -IVALTSSKVIKTAYNANFERTCIAKHFNTMLPPTQWRCTAVHATTLGLPGNLDGVAKAL  118
              +AL  + V K A+NANFERTC+AKHFN  +PP +W CT V++  +GLP++LD V+  L
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  119  KLSEQKDKEGKALIRYFSVPCKPTKANGQRVRNLPEHAPDKWEKFKAYCGQDVEVERSIK  178
            +L +QKDK GK LIRYFS+PCKPTK NG R RNLPEH  +KW++F  YC +DVEVE +I 
Sbjct  121  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  180

Query  179  NRISKFELLKAEQELWALDQDINDRGVRIDADLVKHAIACDEQYQAGLMVEAKELTGLPN  238
            ++I  F +   EQ  W +DQ+INDRG+++   L+  A   D Q +  L+ +AK++TGL N
Sbjct  181  HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN  240

Query  239  PNSTAQLKTWL-EDKGLSVSSLAKDKIEELIEKTDDASVHRVLRLRQEMAKTSVKKYLAM  297
            PNS +QL +WL +D+GL +++L K  ++E + K   +   ++L +R +M+KTSVKKY  M
Sbjct  241  PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYL-KEATGKAKKMLEIRLQMSKTSVKKYNKM  299

Query  298  EKALCPDSRVRGLLQFYGASRTGRWAGRLVQVQNLPQNKIAD--LDTARTLLKGGHYEAI  355
            +  +C+D RVRGL+QFYGA+ TGRWAGR VQ+QNL ++ I+D  L+ AR L+K  +++ +
Sbjct  300  HDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDL  358

Query  356  ELLYGQVPF-VLSQLVRTAFIPSEGNEFYVSDFSAIEARVIAWLAGEGWRLDVFNTHGKI  414
            +LL    P  +LSQLVRT+F + EGNE+ VSDFSAIEARVIAW A E WRLDVFNTHGKI
Sbjct  359  DLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKI  418

Query  415  YEASAAQMFKVPVESITKGSPLRQKGKVAELALGYQGGKGALIQMGALTMGLDEDELPGL  474
            YEASA+QMF+VPVESITKG PLRQKGKV+ELALGYQGG GAL  MGAL MG++E+EL GL
Sbjct  419  YEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGL  478

Query  475  VKAWRTANKKIVQFWYDveaaavkavkerkpvkIQHGLTFLCESGILFVQLPSGRRLAYA  534
            V +WR AN +IV+FW      A       +     HG+ F    G+L ++LPSGR LAY+
Sbjct  479  VDSWRNANPNIVNFW-KACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYP  537

Query  535  KPKLEIDDRFGKEALTYEGKLESGKWGRLNTYGGKLVENIVQAVARDCLAVTLIRLDDAG  594
            K+ +  ++  G + + + G   + KW++L+TYGGKLVENIVQA ARD LA+++ RL+ +G
Sbjct  538  KASVG-ENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASG  596

Query  595  YKTVMHVHDEAVLDVPRGKNELDKVEAIMGEPIPWAKGLPLTADGFITDYYKKD  648
            +K V HVHDE ++++PRG N L  +E+IM  P+ WAKGL L +DGF + +Y KD
Sbjct  597  FKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

20) polL in NC_014551


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  580 bits (2192),  Expect = 7e-167, Method: Compositional matrix adjust.
 Identities = 347/654 (54%), Positives = 471/654 (73%), Gaps = 13/654 (1%)

Query  4    LSIDIETFSSVDLLKCGVYAYTEASDFEILLFAYAFDEEPIKVIDLAQGEALP-HEVL--  60
            ++IDIET+SS D+ KCG Y YTEA DFEIL++AY++D  +I  ID+++ +  P H  +  
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  61   --VALTSSKVIKTAYNANFERTCIAKHFNTMLPPTQWRCTAVHATTLGLPGNLDGVAKAL  118
              +AL  + V K A+NANFERTC+AKHFN  +PP +W CT V++  +GLP++LD V+  L
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  119  KLSEQKDKEGKALIRYFSVPCKPTKANGQRVRNLPEHAPDKWEKFKTYCGQDVEVERSIK  178
            +L +QKDK GK LIRYFS+PCKPTK NG R RNLPEH  +KW++F  YC +DVEVE +I 
Sbjct  121  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  180

Query  179  NRISKFEPLKAEQELWALDQDINDRGVRIDADLVKHAIACDEQYQAGLMVEAKELTGLPN  238
            ++I  F     EQ  W +DQ+INDRG+++   L+  A   D Q +  L+ +AK++TGL N
Sbjct  181  HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN  240

Query  239  PNSTAQLKKWL-EDKGLSVSSLAKDKIEELIEKTDDASVHRVLRLRQEMAKTSVKKYLAM  297
            PNS +QL  WL +D+GL +++L K  ++E + K   +   ++L +R +M+KTSVKKY  M
Sbjct  241  PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYL-KEATGKAKKMLEIRLQMSKTSVKKYNKM  299

Query  298  EKALCPDSRVRGLLQFYGASRTGRWAGRLVQVQNLPQNKIAD--LDTARTLLKGGHYEAI  355
            +  +C+D RVRGL+QFYGA+ TGRWAGR VQ+QNL ++ I+D  L+ AR L+K  +++ +
Sbjct  300  HDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDL  358

Query  356  ELLYGQVPF-VLSQLVRTAFIPSEGNEFYVSDFSAIEARVIAWLAGEGWRLDVFNTHGKI  414
            +LL    P  +LSQLVRT+F + EGNE+ VSDFSAIEARVIAW A E WRLDVFNTHGKI
Sbjct  359  DLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKI  418

Query  415  YEASAAQMFKVPVESITKGSPLRQKGKVAELALGYQGGKGALIQMGALTMGLDEDELPGL  474
            YEASA+QMF+VPVESITKG PLRQKGKV+ELALGYQGG GAL  MGAL MG++E+EL GL
Sbjct  419  YEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGL  478

Query  475  VKAWRTANKKIVQFWYDveaaavkavkerkpvkIQHGLTFLCESGILFVQLPSGRRLAYA  534
            V +WR AN +IV+FW      A       +     HG+ F    G+L ++LPSGR LAY+
Sbjct  479  VDSWRNANPNIVNFW-KACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYP  537

Query  535  KPKLEIDDRFGKEALTYEGKLESGKWGRLNTYGGKLVENIVQAVARDCLAVTLIRLDDAG  594
            K+ +  ++  G + + + G   + KW++L+TYGGKLVENIVQA ARD LA+++ RL+ +G
Sbjct  538  KASVG-ENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASG  596

Query  595  YKTVMHVHDETVLDVPRGKNELDKVESIMGEPIPWAKGLPLTADGFITDYYKKD  648
            +K V HVHDE ++++PRG N L  +E+IM  P+ WAKGL L +DGF + +Y KD
Sbjct  597  FKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

21) Dred_1191 in NC_009253


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  576 bits (2176),  Expect = 1e-165, Method: Compositional matrix adjust.
 Identities = 344/655 (53%), Positives = 478/655 (73%), Gaps = 13/655 (1%)

Query  4    LGIDIETYSRVDLTKSGVYAYAEAEDFEILLFGYAFDDEPVQLIDLASGEQLP-----DN  58
            + IDIETYS  D++K G Y Y+EAEDFEIL+++Y++D+ ++  ID++  ++ P     + 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  59   VLNALTDPEIIKTAFNANFERTCIAKHFNRPMPPEQWRCTHVHALTLGLPGHLGDVAKVL  118
               AL DP + K AFNANFERTC+AKHFN+ MPPE+W CT V+++ +GLP+ L+ V+ VL
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  119  GLKQQKDTAGKALIRYFSMPCKPTKVNGQRTRNLPEHDPDRWAKFKSYCKQDVAVERDIR  178
             L++QKD AGK LIRYFS+PCKPTKVNG RTRNLPEHD ++W +F  YC +DV VE  I 
Sbjct  121  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  180

Query  179  KTLERFPVIEAEHKLWCLDQRINDGGVLVDSQLVTNAIACDTQYQDKLMAKAAKLTGLDN  238
              +  FPV   E+  W +DQ+IND G+ +   L+  A   D Q ++ L+ +A  +TGL+N
Sbjct  181  HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN  240

Query  239  PKSVSQLKQWLLKTDGLEVESLNKESVPELLKQTESSTVKQMLELRQEMAKTSVKKYLAM  298
            P+S +QL  WL   +GL++ +L+K +V E LK++ ++  K+MLE+R +M+KTSVKKY  M
Sbjct  241  PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEA-TGKAKKMLEIRLQMSKTSVKKYNKM  299

Query  299  ERAKGKDGRVRGLLQFYGANRTGRWAGRLVQVQNLPRNSIKD--LDQARQLLKAGDYEML  356
            +     D RVRGL+QFYGA  TGRWAGR VQ+QNL ++ I D  L+ AR+L+K   ++ L
Sbjct  300  HDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDL  358

Query  357  ELLFESVP-TVLSQLIRTAFVPKEGHRFIVADFSAIEARVIAWLADEKWRMDVFRTHGKI  415
            +LL++  P  +LSQL+RT+F + EG+ + V+DFSAIEARVIAW A E+WR+DVF THGKI
Sbjct  359  DLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKI  418

Query  416  YEASASAMFHVPIEEITKGNPLRQKGKVSELALGYQGGPGALIAMGALKEGLTEEELPGL  475
            YEASAS MF+VP+E ITKG+PLRQKGKVSELALGYQGG+GAL AMGAL  G+ E+EL GL
Sbjct  419  YEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGL  478

Query  476  VKLWRQSSPNIVKFWYDTEAAAIKAVKEKTTVELHHGIHFIYESGILFIRLPSGRRLAYI  535
            V  WR+++PNIV+FW   + AAI++VK + T +  HG++F    G+L I LPSGR LAY 
Sbjct  479  VDSWRNANPNIVNFWKACQEAAINTVKSRKTHH-THGVRFYMKKGFLMIELPSGRALAYP  537

Query  536  KPRIQNNPRLDKPALTYEGQEQGTKQWGRLYTYGGKLVENIVQAVARDCLAEALLRLDVA  595
            K+ + +N++ +   + + G +   ++W++L TYGGKLVENIVQA ARD LA ++ RL+ +
Sbjct  538  KASVGENSW-GSQVVEFMGLDL-NRKWSKLKTYGGKLVENIVQATARDLLAISIARLEAS  595

Query  596  GYKTVMHVHDESVMEMPHGVGSLEDACRIMEQPIPWAPGLPMRADGFESNYYKKD  650
            G+K V HVHDE ++E+P+G  +L +   IM++P+ WA GL + +DGF S +Y KD
Sbjct  596  GFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

22) STP_0865 in NC_015558


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  569 bits (2148),  Expect = 2e-163, Method: Compositional matrix adjust.
 Identities = 350/653 (54%), Positives = 484/653 (75%), Gaps = 19/653 (2%)

Query  4    LNIDIETYSSNDIKN-GVYKYSDAEDFEILLFAYSVDGGEVTCLDFTKEEMP------DD  56
            +NIDIETYSSNDI + G YKY++AEDFEIL++AYS+DGG ++ +D TK +        + 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  57   IRDMLFDKDVRKHAFNAQFERVCLSRHLGIPYFLDPSQWRCTMVLAQELGLPSSLEKCAN  116
            ++  LFD  V+K AFNA+FER CL++H+     + P +W CTMV +  +GLP+SL+K ++
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQ--MPPEEWICTMVNSMRIGLPASLDKVGE  118

Query  117  YLDLAQEKDAAGKNLIKYFSIPCKPTKVNGGRTRNLPEHDPEKWQMFIDYCIQDVVVEMS  176
             L L ++KD AGKNLI+YFSIPCKPTKVNGGRTRNLPEHD EKWQ FIDYCI+DV VEM+
Sbjct  119  VLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMT  178

Query  177  IAERLEAIPVHDREWEYYACDQRINDRGVELDTELVDSALYCKDIKMESLASELKGITGL  236
            IA+++  +PV   E  Y   DQ+INDRG+ L   L+ +A        E L ++ K ITGL
Sbjct  179  IAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGL  238

Query  237  ANPNSRAQLLPWLK-EKGYSASGLTKADVESELETAEGELKRVLELKLQTAMSSLKKYEA  295
             NPNS +QLL+WLK ++G   + L K  V+  L  A G  K++LE++LQ + +S+KKY+ 
Sbjct  239  ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNK  298

Query  296  MERAMCSDNRVHGLLQFYGASRTGRWAGRVVQVQNLARNYLSD--LDDARNFVKKRDIDA  353
            M+  MCSD+RV+GL+QFYGA+ TGRWAGR VQ+QNL+++Y+SD  L+ AR+++K + +D 
Sbjct  299  MHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDD  357

Query  354  VEILYD-SLNDTLKQLIRTALIAKEGTEFYVSDFSAIEARVIAWFAGEKWRLEVFATHGK  412
            +++L +   +D L QL+RT++ A EG E+ VSDFSAIEARVIAW+A E+WRL+VF THGK
Sbjct  358  LDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGK  417

Query  413  IYEASASQMFGIPIEEVDKG--LRQKGKISELALGYQGGPGALKQMGALSMGVHEEELQG  470
            IYEASASQMF +P+E + KG  LRQKGK+SELALGYQGG+GALK MGAL MG++E+ELQG
Sbjct  418  IYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQG  477

Query  471  LVDDWRRANQKIVQFWKDVQRAAIKALKTKRPIRLGKLTFNYRKGFLLIKLPSGRNLAYA  530
            LVD WR AN +IV+FWK  Q AAI+++K+++  +   + F  +KGFL+I LPSGR LAY+
Sbjct  478  LVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYP  537

Query  531  KAKIEPGDYGDKII-YEGQGDKAYFTRQETYGGKLVENIVQATARDILAEALLRIEEAGH  589
            KA +     G +++ + G + +   ++  TYGGKLVENIVQATARD+LA ++ R+E +G 
Sbjct  538  KASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGF  597

Query  590  DVVFHVHDEAIIEGA--GMTIEEVNDLMAQAPEWAEGLPLNSEGYITKYYMKD  640
             +V HVHDE I+E +  +  + E++ +M ++ +WA GL LNS+G+ + +YMKD
Sbjct  598  KIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

23) Ccel_3062 in NC_011898


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  569 bits (2150),  Expect = 2e-163, Method: Compositional matrix adjust.
 Identities = 342/657 (53%), Positives = 474/657 (73%), Gaps = 16/657 (2%)

Query  5    LSIDIETYSSVDLIKCGVYRYVEAPDFEILLFAYAYDDEPITVIDLADFEELP-----EQ  59
            ++IDIETYSS D+ KCG Y+Y EA DFEIL++AY+ D+ +I+ ID++  ++ P     E 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  60   VTKDLTDPDVIKAAYNANFERTCIAKFYNKPMPPEQWRCTSVHALTLGLPGNLDGVAKVL  119
                L DP V K A+NANFERTC+AK +NK MPPE+W CT V+++ +GLP++LD V+ VL
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  120  GLDAQKDTAGKNLIKYFSVPCKPTKVNGGRTRNFPHHAPDKWKQFKDYCKQDVVVERAIR  179
             L+ QKD AGKNLI+YFS+PCKPTKVNGGRTRN+P+H  +KW+QF DYC +DV VE +I 
Sbjct  121  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  180

Query  180  KKIEKYPVPEHEWKLWTLDQKINDAGVRLDPVLVQQALKCDLQYATRLDAEAKELTGLDN  239
             KI  +PV   E   W +DQ IND G++L   L+  A   D Q    L  +AK++TGL+N
Sbjct  181  HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN  240

Query  240  PNSTTQLTVWLK-KQGLTVDNGLGKDYIPGLLDQAKGDETVTRMLELRKEMSKTSTKKYE  298
            PNS TQL  WLK  QGL + N L K  +   L +A G     +MLE+R +MSKTS KKY+
Sbjct  241  PNSPTQLLAWLKDDQGLDIPN-LQKKTVQEYLKEATG--KAKKMLEIRLQMSKTSVKKYN  297

Query  299  AMERAMCSDDRARGLLQFCGANRTWRWAGRLIQVQNLPQNKIPD--LGVARELLHSGKFE  356
             M+  MCSD+R RGL+QF GA    RWAGR +Q+QNL ++ I+D  L +AR+L+   +F+
Sbjct  298  KMHDMMCSDERVRGLFQFYGAGTG-RWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFD  356

Query  357  AIELLFNSPPF-VLSQLIRTAFIPSDGCRFIVSDFSAIEARVIAWLAGESWRMKVFKSHG  415
             ++LL+N  P  +LSQL+RT+F + +G  + VSDFSAIEARVIAW A E WR+ VF++HG
Sbjct  357  DLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHG  416

Query  416  KIYEASASHMFHVPIEEITKGNPLRQKGKIAELALGYGGSIGALEAMGALKMGLDADELP  475
            KIYEASAS+MF+VP+E ITKG+PLRQKGK++ELALGY G+ GAL AMGAL MG++ +EL 
Sbjct  417  KIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQ  476

Query  476  DLVTAWRNSNPKIVKLWWDVDKAAMTAVREHMPVRIQYGITFSYKDGFLFIKLPSGRKLA  535
            +LV +WRN+NP+IV++W   + AA+ +V+ +   + + G+ F  K GFL I LPSGR LA
Sbjct  477  GLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTH-GVRFYMKKGFLMIELPSGRALA  535

Query  536  YVKPKIKDGKFGRPALTYEGMDQIKKTWERIDTYGPKLVENIVQAVARDCLAVNMLRLDD  595
            Y K+ + +   G   + + G+D +++ W ++ TYG KLVENIVQA ARD LA+++ RL+ 
Sbjct  536  YPKASVGENSWGSQVVEFMGLD-LNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEA  594

Query  596  AGYDIRMHVHDEVILDVPNTDTDALAQVNEIMSQPIDWAPGLPLRADGYETEFYKKD  652
            +G+ I  HVHDEVI+++P  ++++L +++ IM++P+DWA GL L +DG+ + FY KD
Sbjct  595  SGFKIVGHVHDEVIVEIPR-GSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

24) L in NC_019954


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  556 bits (2099),  Expect = 2e-159, Method: Compositional matrix adjust.
 Identities = 330/657 (51%), Positives = 475/657 (73%), Gaps = 15/657 (2%)

Query  4    LSIDIETYSSVDLTKCGVYAYTQAEDFEILLFGYAFNNDPVEVIDLASGEQIP-----DE  58
            ++IDIETYSS D++KCG Y YT+AEDFEIL+++Y+++ +++  ID++  ++ P     + 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  59   VTNAITDSAVIKTAFNANFERTCLAKYLNKPMPPEEWRCSQAHALTLGLPLNLAGVAKCL  118
               A+ D+AV K AFNANFERTCLAK +NK MPPEEW C+  +++ +GLP +L  V+  L
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  119  GLADQKMSEGKALIRYFSIPCKPTKANGGRTRNLPHHDREKWETFKAYCKQDVVVERSIR  178
             L +QK   GK LIRYFSIPCKPTK NGGRTRNLP+HD EKW+ F  YC +DV VE +I 
Sbjct  121  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  180

Query  179  KRLENYPMTDKELKLWSLDQKINDYGVRVDRQLVENAICCDGIHQKELMAEAIDLTGLEN  238
             ++ ++P+T  E   W +DQ IND G+++ + L+  A   D   + EL+ +A ++TGLEN
Sbjct  181  HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN  240

Query  239  PNSPAQLKTWLKGNHNIQVDSLSKANVEELLNKINHPTVTRVLELRQDMSKTSVRKYEAM  298
            PNSP+QL +WLK+++ +++ +L K  V+E L K       ++LE+R +MSKTSV+KY+ M
Sbjct  241  PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYL-KEATGKAKKMLEIRLQMSKTSVKKYNKM  299

Query  299  DRAMGGDGRIRGLLQYYGANRTGRWAGRLVQVQNLPRNNMkdldlarklllaGD--YESL  356
            +  M +D R+RGL+Q+YGA  TGRWAGR VQ+QNL ++ + D +L     L  +  ++ L
Sbjct  300  HDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDL  358

Query  357  ELLFDSVP-DVLSQLIRTAFVPSPGHRFIISDFSAIEARVIAWLAGEKWVVDTFKGHGKI  415
            +LL++  P D+LSQL+RT+F +  G+ + +SDFSAIEARVIAW A E+W +D F+ HGKI
Sbjct  359  DLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKI  418

Query  416  YEMTASKMFGVPMELIVKGNPEYELRQKGKVAVLACGYQGSVGALKAMGALNMGLKEDEL  475
            YE +AS+MF VP+E I KG+P   LRQKGKV+ LA GYQG+ GALKAMGAL+MG+ E+EL
Sbjct  419  YEASASQMFNVPVESITKGDP---LRQKGKVSELALGYQGGAGALKAMGALEMGIEENEL  475

Query  476  PAIVAAWRESNPNIVKLWWDVEDAAIRAVKDRTSITMQYGLKFYYKSGVLFIRLPSGRNL  535
             ++V +WR++NPNIV++W   ++AAI +VK R +   + G++FY K G L I LPSGR L
Sbjct  476  QGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTH-GVRFYMKKGFLMIELPSGRAL  534

Query  536  AYVKPRIELDTRFNKDKLTYEGIMLGNKWARIDTYGGKLTENIIQAIARDCLAESLLRLD  595
            AY K+ +  +     + + + G+ L  KW+++ TYGGKL ENI+QA ARD LA S+ RL+
Sbjct  535  AYPKASVG-ENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLE  593

Query  596  KAGYKIAFHVHDEVVLDVPQGFGSLKEVEEIMSQDINWAKGLPLRAEGFETNYYMKD  652
             +G+KI  HVHDEV++++P+G  +LKE+E IM++ ++WAKGL L ++GF + +YMKD
Sbjct  594  ASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

25) TepRe1_2443 in NC_015519


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  556 bits (2099),  Expect = 2e-159, Method: Compositional matrix adjust.
 Identities = 330/657 (51%), Positives = 475/657 (73%), Gaps = 15/657 (2%)

Query  4    LSIDIETYSSVDLTKCGVYAYTQAEDFEILLFGYAFNNDPVEVIDLASGEQIP-----DE  58
            ++IDIETYSS D++KCG Y YT+AEDFEIL+++Y+++ +++  ID++  ++ P     + 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  59   VTNAITDSAVIKTAFNANFERTCLAKYLNKPMPPEEWRCSQAHALTLGLPLNLAGVAKCL  118
               A+ D+AV K AFNANFERTCLAK +NK MPPEEW C+  +++ +GLP +L  V+  L
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  119  GLADQKMSEGKALIRYFSIPCKPTKANGGRTRNLPHHDREKWETFKAYCKQDVVVERSIR  178
             L +QK   GK LIRYFSIPCKPTK NGGRTRNLP+HD EKW+ F  YC +DV VE +I 
Sbjct  121  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  180

Query  179  KRLENYPMTDKELKLWSLDQKINDYGVRVDRQLVENAICCDGIHQKELMAEAIDLTGLEN  238
             ++ ++P+T  E   W +DQ IND G+++ + L+  A   D   + EL+ +A ++TGLEN
Sbjct  181  HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN  240

Query  239  PNSPAQLKTWLKGNHNIQVDSLSKANVEELLNKINHPTVTRVLELRQDMSKTSVRKYEAM  298
            PNSP+QL +WLK+++ +++ +L K  V+E L K       ++LE+R +MSKTSV+KY+ M
Sbjct  241  PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYL-KEATGKAKKMLEIRLQMSKTSVKKYNKM  299

Query  299  DRAMGGDGRIRGLLQYYGANRTGRWAGRLVQVQNLPRNNMkdldlarklllaGD--YESL  356
            +  M +D R+RGL+Q+YGA  TGRWAGR VQ+QNL ++ + D +L     L  +  ++ L
Sbjct  300  HDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDL  358

Query  357  ELLFDSVP-DVLSQLIRTAFVPSPGHRFIISDFSAIEARVIAWLAGEKWVVDTFKGHGKI  415
            +LL++  P D+LSQL+RT+F +  G+ + +SDFSAIEARVIAW A E+W +D F+ HGKI
Sbjct  359  DLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKI  418

Query  416  YEMTASKMFGVPMELIVKGNPEYELRQKGKVAVLACGYQGSVGALKAMGALNMGLKEDEL  475
            YE +AS+MF VP+E I KG+P   LRQKGKV+ LA GYQG+ GALKAMGAL+MG+ E+EL
Sbjct  419  YEASASQMFNVPVESITKGDP---LRQKGKVSELALGYQGGAGALKAMGALEMGIEENEL  475

Query  476  PAIVAAWRESNPNIVKLWWDVEDAAIRAVKDRTSITMQYGLKFYYKSGVLFIRLPSGRNL  535
             ++V +WR++NPNIV++W   ++AAI +VK R +   + G++FY K G L I LPSGR L
Sbjct  476  QGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTH-GVRFYMKKGFLMIELPSGRAL  534

Query  536  AYVKPRIELDTRFNKDKLTYEGIMLGNKWARIDTYGGKLTENIIQAIARDCLAESLLRLD  595
            AY K+ +  +     + + + G+ L  KW+++ TYGGKL ENI+QA ARD LA S+ RL+
Sbjct  535  AYPKASVG-ENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLE  593

Query  596  KAGYKIAFHVHDEVVLDVPQGFGSLKEVEEIMSQDINWAKGLPLRAEGFETNYYMKD  652
             +G+KI  HVHDEV++++P+G  +LKE+E IM++ ++WAKGL L ++GF + +YMKD
Sbjct  594  ASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

26) Desru_1077 in NC_015589


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  555 bits (2096),  Expect = 3e-159, Method: Compositional matrix adjust.
 Identities = 335/659 (51%), Positives = 470/659 (72%), Gaps = 18/659 (2%)

Query  4    LSIDIETYSSVDLAKSGVYRYTEAPDFEILLFGYAFNEELVRVIDLASGETLP-----ES  58
            ++IDIETYSS D++K G Y+YTEA DFEIL+++Y+++   +  ID++  +  P     E+
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  59   VLAALTDPEIVKTAFNANFERTCIAKHFGQPMPPEQWRCTQVHALTLGLPIRLDGVAKAM  118
               AL DP + K AFNANFERTC+AKHF + MPPE+W CT V+++ +GLP  LD V+  +
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  119  KLEQQKDSAGKALIRYFSIPCKPTKTNGQRTRNRPEHAPEKWAQFKAYCRQDVEVERTIR  178
            +L++QKD AGK LIRYFSIPCKPTK NG RTRN PEH  EKW QF  YC +DVEVE TI 
Sbjct  121  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  180

Query  179  KALERYPIPEIEQKLWILDQKINDRGVRVDPELVAHAITCDTAYQKKLEAEAVRLTGLEN  238
              +  +P+  IEQ  W++DQ INDRG+++   L+  A   D   +  L  +A ++TGLEN
Sbjct  181  HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN  240

Query  239  PKSVAQLKSWLMEAEGLEIESLSKETVPTLLKQTESETVKRVLELRQELAKTSIKKYQAM  298
            P+S +QL +WL + +GL+I +L K TV   LK++ +   K++LE+R +++KTS+KKY+ M
Sbjct  241  PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEA-TGKAKKMLEIRLQMSKTSVKKYNKM  299

Query  299  DRARCQDNRIRGLLQFYAANRTGRWAGRLVQVQNLPQNklkdldlarqlllSGE--YDTL  356
            +   C D+R+RGL+QFY+A  TGRWAGR VQ+QNL ++ + D +L     L  E  +D L
Sbjct  300  HDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDL  358

Query  357  ELLFESVP-GVLSQLIRTAFIPSAGCRFIVADFSAIEARVIAWLAGEKWRMDVFSSHGKI  415
            +LL++  P ++LSQL+RT+F +  G  + V+DFSAIEARVIAW A E+WR+DVF++HGKI
Sbjct  359  DLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKI  418

Query  416  YEASASQMFKIPVESITKGNPLRQKGKIAELALGYQGSVGALVQMGALKMGLKEEELPEL  475
            YEASASQMF++PVESITKG+PLRQKGK++ELALGYQG+ GAL  MGAL MG+ E+EL  L
Sbjct  419  YEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGL  478

Query  476  VSSWRQANPNIVQFWRDVEKTAITAVQEKRAVTLRHGIVFSYESGALFIRLPSGRRLAYV  535
            V SWR+ANPNIV+FW+  + +AI +V+ +++    HG+ F    G L I LPSGR LAY 
Sbjct  479  VDSWRNANPNIVNFWKACQEAAINTVKSRKTHH-THGVRFYMKKGFLMIELPSGRALAYP  537

Query  536  RPKIGVNERFNKPALTYEGVEQGTKQWGRLYTYGGKLVENIVQATARDCLAESLLRLHQV  595
            ++ +G N +     + + G++   ++W++L TYGGKLVENIVQATARD LA S+ RL+  
Sbjct  538  KASVGENSW-GSQVVEFMGLDL-NRKWSKLKTYGGKLVENIVQATARDLLAISIARLEAS  595

Query  596  GYQTVMHVHDEAVLDVP-DDKDMEEAQEYICYVMGEPIPWAPGLPLRADVFETGYYKKD  653
            G++ V HVHDE ++++P + +++ E +     +M  P+ WA GL L +D F + +Y KD
Sbjct  596  GFKIVGHVHDEVIVEIPRGSNGLKEIET----IMNKPVDWAKGLNLNSDGFTSPFYMKD  650

27) polA.2 in NC_018936


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  552 bits (2084),  Expect = 3e-158, Method: Compositional matrix adjust.
 Identities = 358/655 (55%), Positives = 480/655 (74%), Gaps = 23/655 (3%)

Query  4    LNIDIETYSSNDIKN-GVYKYADAEDFEILLFAYSIDGGEVECLDLTR-QSLP-----ED  56
            +NIDIETYSSNDI + G YKY++AEDFEIL++AYSIDGG +  +D+T+ ++ P     E 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  57   IKDMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPAQWQCTMVLAQELGLPASLEKCAL  116
            +K  LFD  V+K AFNA+FER CL++ +     + P +W CTMV +  +GLPASL+K + 
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQ--MPPEEWICTMVNSMRIGLPASLDKVGE  118

Query  117  YLKLAQEKDAAGKNLIKYFSVPCKPTKANGGRTRNLPEHDPGKWQMFINYCMQDVVVEMA  176
             L+L ++KD AGKNLI+YFS+PCKPTK NGGRTRNLPEHD  KWQ FI+YC++DV VEM+
Sbjct  119  VLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMT  178

Query  177  IAEKLESVPVHDREWDYYVCDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTGL  236
            IA+K+   PV   E  Y V DQ+INDRG+ L K L+ +A        E L  + K +TGL
Sbjct  179  IAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGL  238

Query  237  DNPNSRAQLLPWLK-EHGYSANGLTKADVEQELKKAEGELKRVLELKLQTAMSSLKKYEA  295
            +NPNS +QLL+WLK ++G     L K  V++ LK A G  K++LE++LQ + +S+KKY+ 
Sbjct  239  ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNK  298

Query  296  MERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKD--LDDAREYVKKRDIDA  353
            M+  MCSD RV+GL+QFYGA+ TGRWAGR VQ+QNL+++YI D  L+ AR+ +K + +D 
Sbjct  299  MHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDD  357

Query  354  VEILYD-SLNDTLKQLVRTALVAKDGYTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGK  412
            +++L +   +D L QLVRT++ A +G  + VSDFSAIEARVIAW+A EQWRLDVF+THGK
Sbjct  358  LDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGK  417

Query  413  IYEASASQMFGIPIEEIDKE--LRQKGKISELALGYQGGPGALKQMGALNMGVKEEELQG  470
            IYEASASQMF +P+E I K   LRQKGK+SELALGYQGG+GALK MGAL+MG+ E+ELQG
Sbjct  418  IYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQG  477

Query  471  LVDDWRRANKKIVQFWKDVQRAAIKAIKSRAPIKLGKIRFRYRKGFLFITLPSGRNLAYA  530
            LVD WR AN +IV+FWK  Q AAI+++KSR       +RF  +KGFL I LPSGR LAY+
Sbjct  478  LVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYP  537

Query  531  RAKVEPGDYGDKII-YEGQGDRAYFTAQETYGGKLVENIVQATARDilaeallrieaaGY  589
            +A V     G +++ + G +     +   TYGGKLVENIVQATARD+LA ++ R+EA+G+
Sbjct  538  KASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGF  597

Query  590  DVVFHVHDEAIIE----GSGLIIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMKD  640
             +V HVHDE I+E    ++GL   E++ +M ++ +WA GL LNS+G+ + +YMKD
Sbjct  598  KIVGHVHDEVIVEIPRGSNGL--KEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

28) M1GAS476_1529 in NC_020540


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  552 bits (2084),  Expect = 3e-158, Method: Compositional matrix adjust.
 Identities = 358/655 (55%), Positives = 480/655 (74%), Gaps = 23/655 (3%)

Query  4    LNIDIETYSSNDIKN-GVYKYADAEDFEILLFAYSIDGGEVECLDLTR-QSLP-----ED  56
            +NIDIETYSSNDI + G YKY++AEDFEIL++AYSIDGG +  +D+T+ ++ P     E 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  57   IKDMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPAQWQCTMVLAQELGLPASLEKCAL  116
            +K  LFD  V+K AFNA+FER CL++ +     + P +W CTMV +  +GLPASL+K + 
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQ--MPPEEWICTMVNSMRIGLPASLDKVGE  118

Query  117  YLKLAQEKDAAGKNLIKYFSVPCKPTKANGGRTRNLPEHDPGKWQMFINYCMQDVVVEMA  176
             L+L ++KD AGKNLI+YFS+PCKPTK NGGRTRNLPEHD  KWQ FI+YC++DV VEM+
Sbjct  119  VLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMT  178

Query  177  IAEKLESVPVHDREWDYYVCDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTGL  236
            IA+K+   PV   E  Y V DQ+INDRG+ L K L+ +A        E L  + K +TGL
Sbjct  179  IAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGL  238

Query  237  DNPNSRAQLLPWLK-EHGYSANGLTKADVEQELKKAEGELKRVLELKLQTAMSSLKKYEA  295
            +NPNS +QLL+WLK ++G     L K  V++ LK A G  K++LE++LQ + +S+KKY+ 
Sbjct  239  ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNK  298

Query  296  MERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKD--LDDAREYVKKRDIDA  353
            M+  MCSD RV+GL+QFYGA+ TGRWAGR VQ+QNL+++YI D  L+ AR+ +K + +D 
Sbjct  299  MHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDD  357

Query  354  VEILYD-SLNDTLKQLVRTALVAKDGYTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGK  412
            +++L +   +D L QLVRT++ A +G  + VSDFSAIEARVIAW+A EQWRLDVF+THGK
Sbjct  358  LDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGK  417

Query  413  IYEASASQMFGIPIEEIDKE--LRQKGKISELALGYQGGPGALKQMGALNMGVKEEELQG  470
            IYEASASQMF +P+E I K   LRQKGK+SELALGYQGG+GALK MGAL+MG+ E+ELQG
Sbjct  418  IYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQG  477

Query  471  LVDDWRRANKKIVQFWKDVQRAAIKAIKSRAPIKLGKIRFRYRKGFLFITLPSGRNLAYA  530
            LVD WR AN +IV+FWK  Q AAI+++KSR       +RF  +KGFL I LPSGR LAY+
Sbjct  478  LVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYP  537

Query  531  RAKVEPGDYGDKII-YEGQGDRAYFTAQETYGGKLVENIVQATARDilaeallrieaaGY  589
            +A V     G +++ + G +     +   TYGGKLVENIVQATARD+LA ++ R+EA+G+
Sbjct  538  KASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGF  597

Query  590  DVVFHVHDEAIIE----GSGLIIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMKD  640
             +V HVHDE I+E    ++GL   E++ +M ++ +WA GL LNS+G+ + +YMKD
Sbjct  598  KIVGHVHDEVIVEIPRGSNGL--KEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

29) MGAS2096_Spy1476 in NC_008023


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  552 bits (2084),  Expect = 3e-158, Method: Compositional matrix adjust.
 Identities = 358/655 (55%), Positives = 480/655 (74%), Gaps = 23/655 (3%)

Query  4    LNIDIETYSSNDIKN-GVYKYADAEDFEILLFAYSIDGGEVECLDLTR-QSLP-----ED  56
            +NIDIETYSSNDI + G YKY++AEDFEIL++AYSIDGG +  +D+T+ ++ P     E 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  57   IKDMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPAQWQCTMVLAQELGLPASLEKCAL  116
            +K  LFD  V+K AFNA+FER CL++ +     + P +W CTMV +  +GLPASL+K + 
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQ--MPPEEWICTMVNSMRIGLPASLDKVGE  118

Query  117  YLKLAQEKDAAGKNLIKYFSVPCKPTKANGGRTRNLPEHDPGKWQMFINYCMQDVVVEMA  176
             L+L ++KD AGKNLI+YFS+PCKPTK NGGRTRNLPEHD  KWQ FI+YC++DV VEM+
Sbjct  119  VLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMT  178

Query  177  IAEKLESVPVHDREWDYYVCDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTGL  236
            IA+K+   PV   E  Y V DQ+INDRG+ L K L+ +A        E L  + K +TGL
Sbjct  179  IAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGL  238

Query  237  DNPNSRAQLLPWLK-EHGYSANGLTKADVEQELKKAEGELKRVLELKLQTAMSSLKKYEA  295
            +NPNS +QLL+WLK ++G     L K  V++ LK A G  K++LE++LQ + +S+KKY+ 
Sbjct  239  ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNK  298

Query  296  MERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKD--LDDAREYVKKRDIDA  353
            M+  MCSD RV+GL+QFYGA+ TGRWAGR VQ+QNL+++YI D  L+ AR+ +K + +D 
Sbjct  299  MHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDD  357

Query  354  VEILYD-SLNDTLKQLVRTALVAKDGYTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGK  412
            +++L +   +D L QLVRT++ A +G  + VSDFSAIEARVIAW+A EQWRLDVF+THGK
Sbjct  358  LDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGK  417

Query  413  IYEASASQMFGIPIEEIDKE--LRQKGKISELALGYQGGPGALKQMGALNMGVKEEELQG  470
            IYEASASQMF +P+E I K   LRQKGK+SELALGYQGG+GALK MGAL+MG+ E+ELQG
Sbjct  418  IYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQG  477

Query  471  LVDDWRRANKKIVQFWKDVQRAAIKAIKSRAPIKLGKIRFRYRKGFLFITLPSGRNLAYA  530
            LVD WR AN +IV+FWK  Q AAI+++KSR       +RF  +KGFL I LPSGR LAY+
Sbjct  478  LVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYP  537

Query  531  RAKVEPGDYGDKII-YEGQGDRAYFTAQETYGGKLVENIVQATARDilaeallrieaaGY  589
            +A V     G +++ + G +     +   TYGGKLVENIVQATARD+LA ++ R+EA+G+
Sbjct  538  KASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGF  597

Query  590  DVVFHVHDEAIIE----GSGLIIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMKD  640
             +V HVHDE I+E    ++GL   E++ +M ++ +WA GL LNS+G+ + +YMKD
Sbjct  598  KIVGHVHDEVIVEIPRGSNGL--KEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

30) M5005_Spy_1450 in NC_007297


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  552 bits (2084),  Expect = 3e-158, Method: Compositional matrix adjust.
 Identities = 358/655 (55%), Positives = 480/655 (74%), Gaps = 23/655 (3%)

Query  4    LNIDIETYSSNDIKN-GVYKYADAEDFEILLFAYSIDGGEVECLDLTR-QSLP-----ED  56
            +NIDIETYSSNDI + G YKY++AEDFEIL++AYSIDGG +  +D+T+ ++ P     E 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  57   IKDMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPAQWQCTMVLAQELGLPASLEKCAL  116
            +K  LFD  V+K AFNA+FER CL++ +     + P +W CTMV +  +GLPASL+K + 
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQ--MPPEEWICTMVNSMRIGLPASLDKVGE  118

Query  117  YLKLAQEKDAAGKNLIKYFSVPCKPTKANGGRTRNLPEHDPGKWQMFINYCMQDVVVEMA  176
             L+L ++KD AGKNLI+YFS+PCKPTK NGGRTRNLPEHD  KWQ FI+YC++DV VEM+
Sbjct  119  VLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMT  178

Query  177  IAEKLESVPVHDREWDYYVCDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTGL  236
            IA+K+   PV   E  Y V DQ+INDRG+ L K L+ +A        E L  + K +TGL
Sbjct  179  IAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGL  238

Query  237  DNPNSRAQLLPWLK-EHGYSANGLTKADVEQELKKAEGELKRVLELKLQTAMSSLKKYEA  295
            +NPNS +QLL+WLK ++G     L K  V++ LK A G  K++LE++LQ + +S+KKY+ 
Sbjct  239  ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNK  298

Query  296  MERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKD--LDDAREYVKKRDIDA  353
            M+  MCSD RV+GL+QFYGA+ TGRWAGR VQ+QNL+++YI D  L+ AR+ +K + +D 
Sbjct  299  MHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDD  357

Query  354  VEILYD-SLNDTLKQLVRTALVAKDGYTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGK  412
            +++L +   +D L QLVRT++ A +G  + VSDFSAIEARVIAW+A EQWRLDVF+THGK
Sbjct  358  LDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGK  417

Query  413  IYEASASQMFGIPIEEIDKE--LRQKGKISELALGYQGGPGALKQMGALNMGVKEEELQG  470
            IYEASASQMF +P+E I K   LRQKGK+SELALGYQGG+GALK MGAL+MG+ E+ELQG
Sbjct  418  IYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQG  477

Query  471  LVDDWRRANKKIVQFWKDVQRAAIKAIKSRAPIKLGKIRFRYRKGFLFITLPSGRNLAYA  530
            LVD WR AN +IV+FWK  Q AAI+++KSR       +RF  +KGFL I LPSGR LAY+
Sbjct  478  LVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYP  537

Query  531  RAKVEPGDYGDKII-YEGQGDRAYFTAQETYGGKLVENIVQATARDilaeallrieaaGY  589
            +A V     G +++ + G +     +   TYGGKLVENIVQATARD+LA ++ R+EA+G+
Sbjct  538  KASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGF  597

Query  590  DVVFHVHDEAIIE----GSGLIIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMKD  640
             +V HVHDE I+E    ++GL   E++ +M ++ +WA GL LNS+G+ + +YMKD
Sbjct  598  KIVGHVHDEVIVEIPRGSNGL--KEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

31) MGAS9429_Spy1452 in NC_008021


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  551 bits (2079),  Expect = 6e-158, Method: Compositional matrix adjust.
 Identities = 357/655 (55%), Positives = 481/655 (74%), Gaps = 23/655 (3%)

Query  4    LNIDIETYSSNDIKN-GVYKYADAEDFEILLFAYSIDGGEVECLDLTR-QSLP-----ED  56
            +NIDIETYSSNDI + G YKY++AEDFEIL++AYSIDGG +  +D+T+ ++ P     E 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  57   IKDMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPAQWQCTMVLAQELGLPASLEKCAL  116
            +K  LFD  V+K AFNA+FER CL++ +     + P +W CTMV +  +GLPASL+K + 
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQ--MPPEEWICTMVNSMRIGLPASLDKVGE  118

Query  117  YLKLAQEKDAAGKNLIKYFSVPCKPTKANGGRTRNLPEHDPGKWQMFINYCMQDVVVEMA  176
             L+L ++KD AGKNLI+YFS+PCKPTK NGGRTRNLPEHD  KWQ FI+YC++DV VEM+
Sbjct  119  VLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMT  178

Query  177  IAEKLESVPVHDREWDYYVCDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTGL  236
            IA+K+   PV   E  Y V DQ+INDRG+ L K L+ +A        E L  + K +TGL
Sbjct  179  IAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGL  238

Query  237  DNPNSRAQLLPWLK-EHGYSANGLTKADVEQELKKAEGELKRVLELKLQTAMSSLKKYEA  295
            +NPNS +QLL+WLK ++G     L K  V++ LK A G  K++LE++LQ + +S+KKY+ 
Sbjct  239  ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNK  298

Query  296  MERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKD--LDDAREYVKKRDIDA  353
            M+  MCSD RV+GL+QFYGA+ TGRWAGR VQ+QNL+++YI D  L+ AR+ +K + +D 
Sbjct  299  MHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDD  357

Query  354  VEILYD-SLNDTLKQLVRTALVAKDGYTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGK  412
            +++L +   +D L QLVRT++ A +G  + VSDFSAIEARVIAW+A EQWRLDVF+THGK
Sbjct  358  LDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGK  417

Query  413  IYEASASQMFGIPIEEIDKE--LRQKGKISELALGYQGGPGALKQMGALNMGVKEEELQG  470
            IYEASASQMF +P+E I K   LRQKGK+SELALGYQGG+GALK MGAL+MG+ E+ELQG
Sbjct  418  IYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQG  477

Query  471  VVDDWRRANKKIVQFWKDVQRAAIKAIKSRAPIKLGKIRFRYRKGFLFITLPSGRNLAYA  530
            +VD WR AN +IV+FWK  Q AAI+++KSR       +RF  +KGFL I LPSGR LAY+
Sbjct  478  LVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYP  537

Query  531  RAKVEPGDYGDKII-YEGQGDRAYFTAQETYGGKLVENIVQATARDilaeallrieaaGY  589
            +A V     G +++ + G +     +   TYGGKLVENIVQATARD+LA ++ R+EA+G+
Sbjct  538  KASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGF  597

Query  590  DVVFHVHDEAIIE----GSGLIIEEVNDLMSQAPEWAEGLPLNSEGYVTKYYMKD  640
             +V HVHDE I+E    ++GL   E++ +M+++ +WA GL LNS+G+ + +YMKD
Sbjct  598  KIVGHVHDEVIVEIPRGSNGL--KEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

32) SEQ_2073 in NC_012471


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  549 bits (2072),  Expect = 2e-157, Method: Compositional matrix adjust.
 Identities = 355/653 (55%), Positives = 479/653 (74%), Gaps = 19/653 (2%)

Query  4    LNIDIETYSSNDIKN-GVYKYADAEDFEILLFAYSIDGGEVECLDLTR-QSLP-----ED  56
            +NIDIETYSSNDI + G YKY++AEDFEIL++AYSIDGG +  +D+T+ ++ P     E 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  57   IKDMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCAL  116
            +K  LFD  V+K AFNA+FER CL++ +     + P +W CTMV +  +GLP+SL+K + 
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQ--MPPEEWICTMVNSMRIGLPASLDKVGE  118

Query  117  YLKLVQEKDTSGKNLIRYFSLPCKPSKANGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMA  176
             L+L ++KD +GKNLIRYFS+PCKP+K NGGRTRNLPEH  EKWQ FIDYCI+DV VEM+
Sbjct  119  VLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMT  178

Query  177  IAEKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTGL  236
            IA+K+   PV   E  Y   DQ+INDRG+ L K L+ +A        E L  + K +TGL
Sbjct  179  IAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGL  238

Query  237  DNPNSRAQLLPWLK-EHGYSVNGLTKADVEQELKTAEGELKRVLELKLQTAMSSLKKYEA  295
            +NPNS +QLL+WLK ++G  +  L K  V++ LK A G  K++LE++LQ + +S+KKY+ 
Sbjct  239  ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNK  298

Query  296  MERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKD--LDDAREYVKKRDIDA  353
            M+  MCSD RV+GL+QFYGA+ TGRWAGR VQ+QNL+++YI D  L+ AR+ +K + +D 
Sbjct  299  MHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDD  357

Query  354  VEILYD-SLNDTLKQLVRTALVAKDCCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGK  412
            +++L +   +D L QLVRT++ A +   + VSDFSAIEARVIAW+A EQWRLDVF+THGK
Sbjct  358  LDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGK  417

Query  413  IYEASASQMFGIPIEEIDKE--LRQKGKISELALGYQGGPGALKQMGALNMGVKEEELQG  470
            IYEASASQMF +P+E I K   LRQKGK+SELALGYQGG+GALK MGAL+MG+ E+ELQG
Sbjct  418  IYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQG  477

Query  471  LVDDWRRANKKIVQFWKDVQRAAIKAIKSRAPIKLGKLRFRYRKGFLFITLPSGRNLAYA  530
            LVD WR AN +IV+FWK  Q AAI+++KSR       +RF  +KGFL I LPSGR LAY+
Sbjct  478  LVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYP  537

Query  531  RAKVEPGDYGDKIV-YEGQGDKAYFTAQETYGGKLVENIVQATARDilaeallrieaaGY  589
            +A V     G ++V + G + +   +   TYGGKLVENIVQATARD+LA ++ R+EA+G+
Sbjct  538  KASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGF  597

Query  590  GVVFHVHDEAIIEGS--GLTIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMKD  640
             +V HVHDE I+E +  +  + E++ +M ++ +WA GL LNS+G+ + +YMKD
Sbjct  598  KIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

33) SpyM51055 in NC_009332


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  549 bits (2074),  Expect = 2e-157, Method: Compositional matrix adjust.
 Identities = 354/653 (55%), Positives = 478/653 (74%), Gaps = 19/653 (2%)

Query  4    LNIDIETYSSNDIKN-GVYKYADAEDFEILLFAYSIDGGEVECLDLTR------QSLPED  56
            +NIDIETYSSNDI + G YKY++AEDFEIL++AYSIDGG +  +D+T+      ++  E 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  57   IKDMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCAL  116
            +K  LFD  V+K AFNA+FER CL++ +     + P +W CTMV +  +GLP+SL+K + 
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQ--MPPEEWICTMVNSMRIGLPASLDKVGE  118

Query  117  YLKLAQEKDTSGKNLIRYFSLPCKPSKANGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMA  176
             L+L ++KD +GKNLIRYFS+PCKP+K NGGRTRNLPEH  EKWQ FIDYCI+DV VEM+
Sbjct  119  VLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMT  178

Query  177  IAEKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTGL  236
            IA+K+   PV   E  Y   DQ+INDRG+ L K L+ +A        E L  + K +TGL
Sbjct  179  IAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGL  238

Query  237  DNPNSRAQLLPWLK-EHGYSVNGLTKADVEQELKTAEGELKRVLELKLQTAMSSLKKYEA  295
            +NPNS +QLL+WLK ++G  +  L K  V++ LK A G  K++LE++LQ + +S+KKY+ 
Sbjct  239  ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNK  298

Query  296  MERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKD--LDDAREYVKKRDIDA  353
            M+  MCSD RV+GL+QFYGA+ TGRWAGR VQ+QNL+++YI D  L+ AR+ +K + +D 
Sbjct  299  MHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDD  357

Query  354  VEILYD-SLNDTLKQLVRTALVAKDCCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGK  412
            +++L +   +D L QLVRT++ A +   + VSDFSAIEARVIAW+A EQWRLDVF+THGK
Sbjct  358  LDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGK  417

Query  413  IYEASASQMFGIPIEEIDKE--LRQKGKISELALGYQGGPGALKQMGALNMGVKEEELQG  470
            IYEASASQMF +P+E I K   LRQKGK+SELALGYQGG+GALK MGAL+MG+ E+ELQG
Sbjct  418  IYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQG  477

Query  471  LVDDWRRANKKIVQFWKDVQRAAIKAIKSRAPIKLGKLRFRYRKGFLFITLPSGRNLAYA  530
            LVD WR AN +IV+FWK  Q AAI+++KSR       +RF  +KGFL I LPSGR LAY+
Sbjct  478  LVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYP  537

Query  531  RAKVEPGDYGDKIV-YEGQGDKAYFTAQETYGGKLVENIVQATARDilaeallrieaaGY  589
            +A V     G ++V + G + +   +   TYGGKLVENIVQATARD+LA ++ R+EA+G+
Sbjct  538  KASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGF  597

Query  590  GVVFHVHDEAIIEGS--GLTIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMKD  640
             +V HVHDE I+E +  +  + E++ +M ++ +WA GL LNS+G+ + +YMKD
Sbjct  598  KIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

34) Spy49_0762 in NC_011375


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  549 bits (2074),  Expect = 2e-157, Method: Compositional matrix adjust.
 Identities = 354/653 (55%), Positives = 478/653 (74%), Gaps = 19/653 (2%)

Query  4    LNIDIETYSSNDIKN-GVYKYADAEDFEILLFAYSIDGGEVECLDLTR------QSLPED  56
            +NIDIETYSSNDI + G YKY++AEDFEIL++AYSIDGG +  +D+T+      ++  E 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  57   IKDMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCAL  116
            +K  LFD  V+K AFNA+FER CL++ +     + P +W CTMV +  +GLP+SL+K + 
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQ--MPPEEWICTMVNSMRIGLPASLDKVGE  118

Query  117  YLKLAQEKDTSGKNLIRYFSLPCKPSKANGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMA  176
             L+L ++KD +GKNLIRYFS+PCKP+K NGGRTRNLPEH  EKWQ FIDYCI+DV VEM+
Sbjct  119  VLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMT  178

Query  177  IAEKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTGL  236
            IA+K+   PV   E  Y   DQ+INDRG+ L K L+ +A        E L  + K +TGL
Sbjct  179  IAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGL  238

Query  237  DNPNSRAQLLPWLK-EHGYSVNGLTKADVEQELKTAEGELKRVLELKLQTAMSSLKKYEA  295
            +NPNS +QLL+WLK ++G  +  L K  V++ LK A G  K++LE++LQ + +S+KKY+ 
Sbjct  239  ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNK  298

Query  296  MERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKD--LDDAREYVKKRDIDA  353
            M+  MCSD RV+GL+QFYGA+ TGRWAGR VQ+QNL+++YI D  L+ AR+ +K + +D 
Sbjct  299  MHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDD  357

Query  354  VEILYD-SLNDTLKQLVRTALVAKDCCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGK  412
            +++L +   +D L QLVRT++ A +   + VSDFSAIEARVIAW+A EQWRLDVF+THGK
Sbjct  358  LDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGK  417

Query  413  IYEASASQMFGIPIEEIDKE--LRQKGKISELALGYQGGPGALKQMGALNMGVKEEELQG  470
            IYEASASQMF +P+E I K   LRQKGK+SELALGYQGG+GALK MGAL+MG+ E+ELQG
Sbjct  418  IYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQG  477

Query  471  LVDDWRRANKKIVQFWKDVQRAAIKAIKSRAPIKLGKLRFRYRKGFLFITLPSGRNLAYA  530
            LVD WR AN +IV+FWK  Q AAI+++KSR       +RF  +KGFL I LPSGR LAY+
Sbjct  478  LVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYP  537

Query  531  RAKVEPGDYGDKIV-YEGQGDKAYFTAQETYGGKLVENIVQATARDilaeallrieaaGY  589
            +A V     G ++V + G + +   +   TYGGKLVENIVQATARD+LA ++ R+EA+G+
Sbjct  538  KASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGF  597

Query  590  GVVFHVHDEAIIEGS--GLTIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMKD  640
             +V HVHDE I+E +  +  + E++ +M ++ +WA GL LNS+G+ + +YMKD
Sbjct  598  KIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

35) lmo4a_0076 in NC_017529


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  547 bits (2065),  Expect = 9e-157, Method: Compositional matrix adjust.
 Identities = 340/653 (53%), Positives = 466/653 (72%), Gaps = 17/653 (2%)

Query  6    LRIDIETYSGRDIKNCGAYAYTESEDFEILLFAYAYDDEPVKVIDLT-IDEIP-----DT  59
            + IDIETYS+ DI +CGAY YTE+EDFEIL++AY+ D+ ++  ID+T +D+ P     +T
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  60   VLEDLNNRRVLKTAHNANFERTCLAKYYNRKMPPEQWQCTMVHGTLLGLPASLDMMSKAL  119
                L +  V K A NANFERTCLAK +N++MPPE+W CTMV++  +GLPASLD ++  L
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  120  RLAQEKDNEGKALIRYFCMPCKPTKANGGRTRNYPEHASEKWAKFIEYCRQDVVVERSIA  179
            RL ++KD+ GK LIRYF +PCKPTK NGGRTRN PEH  EKW +FI+YC +DV VE +IA
Sbjct  121  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  180

Query  180  KKIAKFPFPEDEQRNWELDQRIADKGVRIDVDLVKHAIACQERYQASLSKKAKGLTGLEN  239
             KI  FP    EQ  W +DQ+I D+G+++   L+  A   + + +  L ++AK +TGLEN
Sbjct  181  HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN  240

Query  240  PNSVQQLKDWL-ADMGYPVSSLNKdsvselladedldedvREMLLLRQEMSKTSIKKYEK  298
            PNS  QL  WL  D G  +++L+K   +      +     + ML +R +MSKTS+KKY+K
Sbjct  241  PNSPTQLLAWLKDDQGLDIPNLQK--KTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNK  298

Query  299  MQHARCHDGRVRGLLQFNGANRTGRWAGRLVQVQNLPRNYIKDIA-EVRKDL-KAGDYEA  356
            M++  C D RVRGL+QF GA  TGRWAGR VQ+QNL ++YI D   E+ +DL K   ++ 
Sbjct  299  MHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDD  357

Query  357  FEMMYSNVP-DVLSQLIRTAFIAEDGYTFDITDFSAIEARVIAWLAGEQWRLDVFNSHGK  415
            ++++ +  P D+LSQL+RT+F AE+G  + ++DFSAIEARVIAW A EQWRLDVFN+HGK
Sbjct  358  LDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGK  417

Query  416  IYEASASQMFHIPIEEVDKN--LRQKGKVSELALGYNGGVNALIAMGALEMGLKENELQG  473
            IYEASASQMF++P+E + K   LRQKGKVSELALGY+GG  AL AMGALEMG+ ENELQG
Sbjct  418  IYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQG  477

Query  474  IVDAWRKASPAITSLWRGVEKHAKLAISTRKSQKYKGLTFYYEAGILFIKLPSGRNLAYF  533
            +VD+WR+A+P I ++W++ +  A  ++ +RK++   G+ FY   G+L I LPSGR LAY 
Sbjct  478  LVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYP  537

Query  534  RAKLVPGKYGPQIC-YEGVT-DKGWRKQYTYGGKLVENIVQAIARDCLAISLRRIEDTGI  591
            +A +     G+Q+  + G+  ++ W K  TYGGKLVENIVQA ARD LAIS+ R+E +G+
Sbjct  538  KASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGF  597

Query  592  DTVMHVHDEAITEVQESESSVDKLNAILAEPISWAPGLPLQGDGFSSDFYMKD  644
              V HVHDE I E+  + +++  +++I+  P+ WA GL L++DGF+S FYMKD
Sbjct  598  KIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

36) M6_Spy0034 in NC_006086


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  545 bits (2058),  Expect = 3e-156, Method: Compositional matrix adjust.
 Identities = 355/653 (55%), Positives = 477/653 (74%), Gaps = 19/653 (2%)

Query  4    LNIDIETYSSNDIKN-GVYKYADAEDFEILLFAYSIDGGEVECLDLTR------QSLPED  56
            +NIDIETYSSNDI + G YKY++AEDFEIL++AYSIDGG +  +D+T+      ++  E 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  57   IKDMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCAL  116
            +K  LFD  V+K AFNA+FER CL++ +     + P +W CTMV +  +GLP+SL+K + 
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQ--MPPEEWICTMVNSMRIGLPASLDKVGE  118

Query  117  YLKLAQEKDTSGKNLIRYFSLPCKPSKTNGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMA  176
             L+L ++KD +GKNLIRYFS+PCKP+K NGGRTRNLPEH  EKWQ FIDYCI+DV VEM+
Sbjct  119  VLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMT  178

Query  177  IAEKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTGL  236
            IA+K+   PV   E  Y   DQ+INDRG+ L K L+ +A        E L  + K +TGL
Sbjct  179  IAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGL  238

Query  237  DNPNSRTQLLPWLK-EHGYSASGLTKADVEKELKTAEGELKRVLELKLQTAMSSLKKYEA  295
            +NPNS TQLL+WLK ++G   + L K  V+  LK A G  K++LE++LQ + +S+KKY+ 
Sbjct  239  ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNK  298

Query  296  MERARCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKD--LDDAREYVKKRDIDA  353
            M+   CSD RV+GL+QFYGA+ TGRWAGR VQ+QNL+++YI D  L+ AR+ +K + +D 
Sbjct  299  MHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDD  357

Query  354  VEILYD-SLNDTLKQLVRTALVAKDGCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGK  412
            +++L +   +D L QLVRT++ A +G  + VSDFSAIEARVIAW+A EQWRLDVF+THGK
Sbjct  358  LDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGK  417

Query  413  IYEASASQMFGIPIEEIDKE--LRQKGKISELALGYQGGPGALKQMGALNMGVKEEELQG  470
            IYEASASQMF +P+E I K   LRQKGK+SELALGYQGG+GALK MGAL+MG+ E+ELQG
Sbjct  418  IYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQG  477

Query  471  LVDDWRRANKKIVQFWKDVQRAAIKAIKSRAPVRLGKLRFRYRKGFLFITLPSGRNLAYA  530
            LVD WR AN +IV+FWK  Q AAI+++KSR   +   +RF  +KGFL I LPSGR LAY+
Sbjct  478  LVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYP  537

Query  531  RAKVEPGDYGDKIV-YEGQGDKAYFTAQETYGGKLVENIVQATARDilaeallrieaaGH  589
            +A V     G ++V + G + +   +   TYGGKLVENIVQATARD+LA ++ R+EA+G 
Sbjct  538  KASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGF  597

Query  590  GVVFHVHDEAIIEGS--GLTIEEVNDLMAQAPEWAEGLPLNSEGYITKYYMKD  640
             +V HVHDE I+E +  +  + E++ +M ++ +WA GL LNS+G+ + +YMKD
Sbjct  598  KIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

37) polA.2 in NC_004070


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  545 bits (2058),  Expect = 3e-156, Method: Compositional matrix adjust.
 Identities = 355/653 (55%), Positives = 477/653 (74%), Gaps = 19/653 (2%)

Query  4    LNIDIETYSSNDIKN-GVYKYADAEDFEILLFAYSIDGGEVECLDLTR------QSLPED  56
            +NIDIETYSSNDI + G YKY++AEDFEIL++AYSIDGG +  +D+T+      ++  E 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  57   IKDMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCAL  116
            +K  LFD  V+K AFNA+FER CL++ +     + P +W CTMV +  +GLP+SL+K + 
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQ--MPPEEWICTMVNSMRIGLPASLDKVGE  118

Query  117  YLKLAQEKDTSGKNLIRYFSLPCKPSKTNGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMA  176
             L+L ++KD +GKNLIRYFS+PCKP+K NGGRTRNLPEH  EKWQ FIDYCI+DV VEM+
Sbjct  119  VLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMT  178

Query  177  IAEKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTGL  236
            IA+K+   PV   E  Y   DQ+INDRG+ L K L+ +A        E L  + K +TGL
Sbjct  179  IAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGL  238

Query  237  DNPNSRTQLLPWLK-EHGYSASGLTKADVEKELKTAEGELKRVLELKLQTAMSSLKKYEA  295
            +NPNS TQLL+WLK ++G   + L K  V+  LK A G  K++LE++LQ + +S+KKY+ 
Sbjct  239  ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNK  298

Query  296  MERARCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKD--LDDAREYVKKRDIDA  353
            M+   CSD RV+GL+QFYGA+ TGRWAGR VQ+QNL+++YI D  L+ AR+ +K + +D 
Sbjct  299  MHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDD  357

Query  354  VEILYD-SLNDTLKQLVRTALVAKDGCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGK  412
            +++L +   +D L QLVRT++ A +G  + VSDFSAIEARVIAW+A EQWRLDVF+THGK
Sbjct  358  LDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGK  417

Query  413  IYEASASQMFGIPIEEIDKE--LRQKGKISELALGYQGGPGALKQMGALNMGVKEEELQG  470
            IYEASASQMF +P+E I K   LRQKGK+SELALGYQGG+GALK MGAL+MG+ E+ELQG
Sbjct  418  IYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQG  477

Query  471  LVDDWRRANKKIVQFWKDVQRAAIKAIKSRAPVRLGKLRFRYRKGFLFITLPSGRNLAYA  530
            LVD WR AN +IV+FWK  Q AAI+++KSR   +   +RF  +KGFL I LPSGR LAY+
Sbjct  478  LVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYP  537

Query  531  RAKVEPGDYGDKIV-YEGQGDKAYFTAQETYGGKLVENIVQATARDilaeallrieaaGH  589
            +A V     G ++V + G + +   +   TYGGKLVENIVQATARD+LA ++ R+EA+G 
Sbjct  538  KASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGF  597

Query  590  GVVFHVHDEAIIEGS--GLTIEEVNDLMAQAPEWAEGLPLNSEGYITKYYMKD  640
             +V HVHDE I+E +  +  + E++ +M ++ +WA GL LNS+G+ + +YMKD
Sbjct  598  KIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

38) SPs0422 in NC_004606


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  545 bits (2058),  Expect = 3e-156, Method: Compositional matrix adjust.
 Identities = 355/653 (55%), Positives = 477/653 (74%), Gaps = 19/653 (2%)

Query  4    LNIDIETYSSNDIKN-GVYKYADAEDFEILLFAYSIDGGEVECLDLTR------QSLPED  56
            +NIDIETYSSNDI + G YKY++AEDFEIL++AYSIDGG +  +D+T+      ++  E 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  57   IKDMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCAL  116
            +K  LFD  V+K AFNA+FER CL++ +     + P +W CTMV +  +GLP+SL+K + 
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQ--MPPEEWICTMVNSMRIGLPASLDKVGE  118

Query  117  YLKLAQEKDTSGKNLIRYFSLPCKPSKTNGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMA  176
             L+L ++KD +GKNLIRYFS+PCKP+K NGGRTRNLPEH  EKWQ FIDYCI+DV VEM+
Sbjct  119  VLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMT  178

Query  177  IAEKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTGL  236
            IA+K+   PV   E  Y   DQ+INDRG+ L K L+ +A        E L  + K +TGL
Sbjct  179  IAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGL  238

Query  237  DNPNSRTQLLPWLK-EHGYSASGLTKADVEKELKTAEGELKRVLELKLQTAMSSLKKYEA  295
            +NPNS TQLL+WLK ++G   + L K  V+  LK A G  K++LE++LQ + +S+KKY+ 
Sbjct  239  ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNK  298

Query  296  MERARCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKD--LDDAREYVKKRDIDA  353
            M+   CSD RV+GL+QFYGA+ TGRWAGR VQ+QNL+++YI D  L+ AR+ +K + +D 
Sbjct  299  MHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDD  357

Query  354  VEILYD-SLNDTLKQLVRTALVAKDGCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHGK  412
            +++L +   +D L QLVRT++ A +G  + VSDFSAIEARVIAW+A EQWRLDVF+THGK
Sbjct  358  LDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGK  417

Query  413  IYEASASQMFGIPIEEIDKE--LRQKGKISELALGYQGGPGALKQMGALNMGVKEEELQG  470
            IYEASASQMF +P+E I K   LRQKGK+SELALGYQGG+GALK MGAL+MG+ E+ELQG
Sbjct  418  IYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQG  477

Query  471  LVDDWRRANKKIVQFWKDVQRAAIKAIKSRAPVRLGKLRFRYRKGFLFITLPSGRNLAYA  530
            LVD WR AN +IV+FWK  Q AAI+++KSR   +   +RF  +KGFL I LPSGR LAY+
Sbjct  478  LVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYP  537

Query  531  RAKVEPGDYGDKIV-YEGQGDKAYFTAQETYGGKLVENIVQATARDilaeallrieaaGH  589
            +A V     G ++V + G + +   +   TYGGKLVENIVQATARD+LA ++ R+EA+G 
Sbjct  538  KASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGF  597

Query  590  GVVFHVHDEAIIEGS--GLTIEEVNDLMAQAPEWAEGLPLNSEGYITKYYMKD  640
             +V HVHDE I+E +  +  + E++ +M ++ +WA GL LNS+G+ + +YMKD
Sbjct  598  KIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

39) CDBI1_07445 in NC_017179


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  543 bits (2049),  Expect = 2e-155, Method: Compositional matrix adjust.
 Identities = 330/657 (51%), Positives = 477/657 (73%), Gaps = 15/657 (2%)

Query  4    LSIDIETYSDLDIKKVGVYRYVDSANFEILLFAYAFDNEEVKVIDL--VNDEELPKEVIE  61
            ++IDIETYS  DI K G Y+Y ++ +FEIL++AY++D   +  ID+  V++E +  +   
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  62   ---ALNDNKVIKSAFNANFERTAISKFLNINLKPNEWSCTMIKALTLGLPGSLDSVSKAL  118
               AL D  V K AFNANFERT ++K +N ++ P+EW CTM++++ +GLP+SLD V+  L
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  119  KFNEDKQKMKEGKALIQYFCKPCKATKVNKGRTRNLPIHDMEKWNKFKEYCKQDVVVERE  178
            +++++K+K   GK LI+YF  PCK+TKVN GRTRNLP HD+EKW++F +YC +DV VE  
Sbjct  121  RLQNQKDK--AGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMT  178

Query  179  IRNKLSKYKTTEREIKLWYLDQRINDTGIKVDTELIENAIECDKRYTEKLTKEAIKITGL  238
            I +K+  +  T  E   W +DQ+IND GIK+   L+  A   DK+  E L ++A  ITGL
Sbjct  179  IAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGL  238

Query  239  NNPNSPAQLKKWLSDKVGFEITSLTKESIPEILKQVDDENVVRILELRKLMSKTSIKKYE  298
            +NPNSP+QL  WL D  G++I +L K ++ E LK+  + +  ++LE+R  MSKTS+KKY+
Sbjct  239  ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATG-KAKKMLEIRLQMSKTSVKKYN  297

Query  299  AMKLAKGNDNRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHIED--LDLARNLLKEGDFD  356
             M     +D+RVRGL+QFYGA  TGRWAGR VQ+QNL ++ I D  L++AR+L+KE  FD
Sbjct  298  KMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFD  356

Query  357  LIELLYDSVP-DVLSQLIRTAFIPSEGHRFIVSDFSAIEARVIAWFAGEKWRLDVFNSHG  415
             ++LL +  P D+LSQL+RT+F + EG+ + VSDFSAIEARVIAW+A E+WRLDVFN+HG
Sbjct  357  DLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHG  416

Query  416  KIYEASASHMFKVPIESIKKGDPLRQKGKISELALGYGGSIGALTSMGAIKMGLDEEELQ  475
            KIYEASAS+MF+VP+ESI KGDPLRQKGK+SELALGY G+ GAL +MGA+ MG++E+ELQ
Sbjct  417  KIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQ  476

Query  476  PLVTTWRNANPNITKFWWDVDkaakkaIKDRTIVKLQHGIKFIYNPGVLFIELPSGRRLS  535
             LV +WRNANPNI +FW   + AA +++K R      HG++F  + G L IELPSGR L+
Sbjct  477  GLVDSWRNANPNIVNFWKACQEAAINTVKSRK-THHTHGVRFYMKKGFLMIELPSGRALA  535

Query  536  YLRPKIEPHTTFSGDKITYEGMEQTSKQWKRIDTYGPKLVENIVQATARDCLREAMFNVT  595
            Y ++ +  + + +++ + + G++  +++W ++ TYG KLVENIVQATARD L  ++  + 
Sbjct  536  YPKASVG-ENSWGSQVVEFMGLD-LNRKWSKLKTYGGKLVENIVQATARDLLAISIARLE  593

Query  596  DAGYSIVMHVHDELVIDVDKKGGSLEEVNSIMGKEISWAKGLPLKADGYECDYYKKD  652
             +G+ IV HVHDE+++++ + + +L E+++IM K + WAKGL L++DG+   +Y KD
Sbjct  594  ASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

40) CDR20291_1424 in NC_013316


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  543 bits (2049),  Expect = 2e-155, Method: Compositional matrix adjust.
 Identities = 330/657 (51%), Positives = 477/657 (73%), Gaps = 15/657 (2%)

Query  4    LSIDIETYSDLDIKKVGVYRYVDSANFEILLFAYAFDNEEVKVIDL--VNDEELPKEVIE  61
            ++IDIETYS  DI K G Y+Y ++ +FEIL++AY++D   +  ID+  V++E +  +   
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  62   ---ALNDNKVIKSAFNANFERTAISKFLNINLKPNEWSCTMIKALTLGLPGSLDSVSKAL  118
               AL D  V K AFNANFERT ++K +N ++ P+EW CTM++++ +GLP+SLD V+  L
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  119  KFNEDKQKMKEGKALIQYFCKPCKATKVNKGRTRNLPIHDMEKWNKFKEYCKQDVVVERE  178
            +++++K+K   GK LI+YF  PCK+TKVN GRTRNLP HD+EKW++F +YC +DV VE  
Sbjct  121  RLQNQKDK--AGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMT  178

Query  179  IRNKLSKYKTTEREIKLWYLDQRINDTGIKVDTELIENAIECDKRYTEKLTKEAIKITGL  238
            I +K+  +  T  E   W +DQ+IND GIK+   L+  A   DK+  E L ++A  ITGL
Sbjct  179  IAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGL  238

Query  239  NNPNSPAQLKKWLSDKVGFEITSLTKESIPEILKQVDDENVVRILELRKLMSKTSIKKYE  298
            +NPNSP+QL  WL D  G++I +L K ++ E LK+  + +  ++LE+R  MSKTS+KKY+
Sbjct  239  ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATG-KAKKMLEIRLQMSKTSVKKYN  297

Query  299  AMKLAKGNDNRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHIED--LDLARNLLKEGDFD  356
             M     +D+RVRGL+QFYGA  TGRWAGR VQ+QNL ++ I D  L++AR+L+KE  FD
Sbjct  298  KMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFD  356

Query  357  LIELLYDSVP-DVLSQLIRTAFIPSEGHRFIVSDFSAIEARVIAWFAGEKWRLDVFNSHG  415
             ++LL +  P D+LSQL+RT+F + EG+ + VSDFSAIEARVIAW+A E+WRLDVFN+HG
Sbjct  357  DLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHG  416

Query  416  KIYEASASHMFKVPIESIKKGDPLRQKGKISELALGYGGSIGALTSMGAIKMGLDEEELQ  475
            KIYEASAS+MF+VP+ESI KGDPLRQKGK+SELALGY G+ GAL +MGA+ MG++E+ELQ
Sbjct  417  KIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQ  476

Query  476  PLVTTWRNANPNITKFWWDVDkaakkaIKDRTIVKLQHGIKFIYNPGVLFIELPSGRRLS  535
             LV +WRNANPNI +FW   + AA +++K R      HG++F  + G L IELPSGR L+
Sbjct  477  GLVDSWRNANPNIVNFWKACQEAAINTVKSRK-THHTHGVRFYMKKGFLMIELPSGRALA  535

Query  536  YLRPKIEPHTTFSGDKITYEGMEQTSKQWKRIDTYGPKLVENIVQATARDCLREAMFNVT  595
            Y ++ +  + + +++ + + G++  +++W ++ TYG KLVENIVQATARD L  ++  + 
Sbjct  536  YPKASVG-ENSWGSQVVEFMGLD-LNRKWSKLKTYGGKLVENIVQATARDLLAISIARLE  593

Query  596  DAGYSIVMHVHDELVIDVDKKGGSLEEVNSIMGKEISWAKGLPLKADGYECDYYKKD  652
             +G+ IV HVHDE+++++ + + +L E+++IM K + WAKGL L++DG+   +Y KD
Sbjct  594  ASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

41) polA-1 in NC_009699


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  543 bits (2049),  Expect = 2e-155, Method: Compositional matrix adjust.
 Identities = 323/662 (49%), Positives = 482/662 (73%), Gaps = 23/662 (3%)

Query  8    LSIDVETYSSMDIKTSGAYKYCESPDFEILLFAYAFNDEPVQIVDLANGEKLPSNVFY--  65
            ++ID+ETYSS DI   GAYKY E+ DFEIL++AY++++ ++  +D+++ ++ P +  +  
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  66   ---ALTDPNIIKTAFNANFERNSIKNQYPALCPPEQWECTMVKALTLGLPSSLDMVGKAL  122
               AL DP + K AFNANFER  + +++    PPE+W CTMV+++ +GLP+SLD VG  L
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  123  KFEEDKQKMKEGKALIQYFCKPCKPTKTNGKRTRNLPEHDMEKWETFKEYCKRDVEVERE  182
            +++++K+K   GK LI+YF  PCKPTK NG RTRNLPEHD+EKW+ F +YC RDVEVE  
Sbjct  121  RLQNQKDK--AGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMT  178

Query  183  IRNLLNRYETKVEEQKLWQLDQHINDRGI--GTDLILIKQAIECDTNYTERLTKAAIELT  240
            I + ++ +     EQ  W +DQHINDRGI  +  L+L  + ++ +++  E L + A ++T
Sbjct  179  IAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSK--EELLNQAKHIT  236

Query  241  GLENPNSPTQIKKWIGERLGREVKSLTKTSIPGLIEEATSLNKSEVIKMLELRQLMAKTS  300
            GLENPNSPTQ+  W+ +  G ++ +L K ++   + EAT+  K    KMLE+R  M+KTS
Sbjct  237  GLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAK----KMLEIRLQMSKTS  292

Query  301  IKKYDTMQNARCKDGRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPD--LDNARNFVR  358
            +KKY+ M++  C D RVRGL+QFYGA  TGRWAGR VQ+QNL ++ ++D  L+ AR++++
Sbjct  293  VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK  351

Query  359  EGKFQEVEFLFDSVP-DTLSQLIRTAFIPREGNRFIVSDFSAIEARVIAWFAGEQWRLDV  417
            E +F+++++L++  P D LSQL+RT+F + EGN + VSDFSAIEARVIAW+A EQWRLDV
Sbjct  352  EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV  411

Query  418  FSTHGKIYEASASQMFKVAIESIKKGSELRQKGKIAELALGYGGSVGALSSMDR-KKSIP  476
            F+THGKIYEASASQMF+V++ESI KG  LRQKGK++ELALGY G+ GAL +M+    +I 
Sbjct  412  FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE  471

Query  477  EEELPGLVKSWRNANPNITKFWWDVDKAAKKVIRERTTVNLQYGLKFIYDPGVLFIQLPS  536
            E+EL GLV SWRNANPNI +FW   + AA + ++ R T + + G++F    G L I+LPS
Sbjct  472  ENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTH-GVRFYMKKGFLMIELPS  530

Query  537  GRKLSYIRPKIEPHETFSGDKITYEGMEQTSKQWKRIDTYGPKLVENIVQATSRDCLREA  596
            GR L+Y ++ +  +++ +++ + + G++  +++W ++ TYG KLVENIVQAT+RD L  +
Sbjct  531  GRALAYPKASVG-ENSWGSQVVEFMGLD-LNRKWSKLKTYGGKLVENIVQATARDLLAIS  588

Query  597  MFRVDKAGYDIVMHVHDEVVLDIPKDRATVKEINELMGQPIEWAPGLPLKADGYECNYYQ  656
            + R++ +G+ IV HVHDEV+++IP++   +KEI+ +M +P++WA GL L++DG+   +Y 
Sbjct  589  IARLEASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYM  648

Query  657  KD  658
            KD
Sbjct  649  KD  650

42) Desru_3570 in NC_015589


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  539 bits (2036),  Expect = 2e-154, Method: Compositional matrix adjust.
 Identities = 329/650 (51%), Positives = 471/650 (73%), Gaps = 13/650 (2%)

Query  10   LDLETFSSIDLAKSGVYRYAESPDFEILLFGYSVDGGGVQVIDLASGEHLP-----DEIY  64
            +D+ET+SS D++K G Y+Y+E+ DFEIL+++YS+DGG++  ID++  ++ P     + + 
Sbjct  3    IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFETFK  62

Query  65   SALLDESVIKWAHNAQFERVCLSRYLNQWLKPNSWRCTMVWSAYLGLPLSLEGAALVTGA  124
             AL+D +V K A NA+FER CL++ +N+ + P+ W CTMV S  +GLP SL+  + V   
Sbjct  63   IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL  122

Query  125  EKQKLIEGKDLIRYFSMPCKPTKTNGQRTRNLPEHDPERWERFKAYNARDVETEMAIQAK  184
            ++QK   GK+LIRYFS+PCKPTK NG RTRNLPEHD E+W++F  Y  RDVE EM+I  K
Sbjct  123  QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIAHK  182

Query  185  LANFPVPEDEWKNY-ILDQEINDRGILLDMTLVRQAIRCDEQSRSELTRVMQELTALDNP  243
            + +FPV   E + Y ++DQ+INDRGI L  +L+  A   D QS+ EL    +++T+L+NP
Sbjct  183  IKDFPVTAIE-QAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLENP  241

Query  244  NSVVQMKSWL-ADHGLETDTLDKATVKELLKTAPGNLGRVLELRQKLAKSSIKKYTGMEN  302
            NS  Q+ +WL  D+GL+   L+K TV+E LK A G+  ++LE+R +++K+S+KKY  M++
Sbjct  242  NSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMHD  301

Query  303  AVCSDGRARGLLQFYGANRTGRFAGRLIQVQNLPQNHLPD--LEEARNLIRSGQFDAAEM  360
             +CSD R RGL+QFYGA  TGR AGR +Q+QNL ++ ++D  LE AR+LI+  +FD  ++
Sbjct  302  MMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLDL  360

Query  361  LYDSVP-SVLSELIRTAFIPQSGFKFIVADFSAIEARVIAWLAGETWRNEVFATHGKIYE  419
            L +  P  +LS+L+RT+F ++ G  + V+DFSAIEARVIAW A E WR +VF THGKIYE
Sbjct  361  LLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIYE  420

Query  420  ASAAQIFHVPIEEVTKGSPLRQKGKIAELALGYGGSVGALTAMGALDMGLTEDELQPLVT  479
            ASA+Q+F+VP+E +TKG PLRQKGK++ELALGY G+ GAL AMGAL+MG+ E+ELQ LV 
Sbjct  421  ASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVD  480

Query  480  AWRKANPNIVRFWWDVDRAAKRAVKDRVTTETHGIRIGYRSGMLFITLPSGRNLYYVKPR  539
            +WR+ANPNIV FW   + AA  +VK R T +THG+R+  + G L I LPSGR L Y K+ 
Sbjct  481  SWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKAS  540

Query  540  IELNRFGSESVTYEGIGAAKKWERIESYGPKFVENIVQAASRDILCYAMRRLDALGYNIV  599
            +  N  GS+ V + G++  +KW ++ +YG K+VENIVQA++RD+L  ++ RL+A G++IV
Sbjct  541  VGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIV  600

Query  600  MHVHDEVVIEAP-ARASVDDICTVMSESPTWAKGLLLRADGFECQFYKKD  648
             HVHDEV++E P +  ++ +I T+M+ +  WAKGL L +DGF   FY KD
Sbjct  601  GHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

43) Bsel_3024 in NC_014219


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  534 bits (2014),  Expect = 1e-152, Method: Compositional matrix adjust.
 Identities = 326/655 (50%), Positives = 478/655 (73%), Gaps = 14/655 (2%)

Query  10   LSIDIETFSNVDLKESGVYAYAEGEGFTILLLAYAFDDEEVIVVDL--VQDEPIPTT--V  65
            ++IDIET+S+ D+   G Y Y+E+E+F IL++AY++D+  +  +D+  V++EP+ +    
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  66   LK-ALIDPSIMKTAYNANFERTCLAAYLNQPMPTEQWHCSSVHALTLGLPGHLDGVANVL  124
            +K AL+DP++ K A+NANFERTCLA  +N+ MP E+W C+ V+++ +GLP+ LD V++VL
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  125  NLGDQKDNAGKALIRYFSVPCKPTASNGHRTRNLPEHDLEKWHAYKAYCRQDVEVERALR  184
             L +QKD+AGK LIRYFS+PCKPT  NG RTRNLPEHDLEKW+ +  YC +DVEVE ++ 
Sbjct  121  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  180

Query  185  KRLASNPIPEKEQRLWELDQRMNDEGVRIDTDLVRQAIQLDAKEQALLLEEAKQITGLEN  244
             ++   P+   EQ  W +DQ++ND G+++   L+  A  LD + +  LL++AK+ITGLEN
Sbjct  181  HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN  240

Query  245  PNSVAQLRDWLT-SRGIETSGLAKKQVSDLLQTDLPGDVRRVLILRQMMSKTSVKKYEAM  303
            PNS +QL  WL   +G++ + L KK V + L+ +  G  +++L +R  MSKTSVKKY+ M
Sbjct  241  PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLK-EATGKAKKMLEIRLQMSKTSVKKYNKM  299

Query  304  DRSICKDGHIRGLLQFYGANRTGRWAGRIVQAHNLPKHRIGD--LDEARQLVKTGNYELI  361
            +  +C D ++RGL+QFYGA  TGRWAGR VQ +NL KH I+D  L+ AR+L+K   ++ +
Sbjct  300  HDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDL  358

Query  362  TTLYGSLA-DLLSQLTRTAFIPKKGYRFVVSDFSAIEARVIAWLAGERWRMKVFEGHGKI  420
              L    + DLLSQL RT+F +  G  + VSDFSAIEARVIAW A E+WR+ VF+ HGKI
Sbjct  359  DLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKI  418

Query  421  YEASASQMFGVPIEEITKASPLRQKGKIaelalgyggakgalTQMGALEMGLSEDELPAL  480
            YEASASQMF VP+E ITK+ PLRQKGK++ELALGY G+ GAL  MGALEMG+ E+EL +L
Sbjct  419  YEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGL  478

Query  481  VKAWRKANPNIVNLWYDLEKSAFEAVKWQKVVTAKSGIQFYGGSGLLRARLPSGRSLSYV  540
            V +WR+ANPNIVN+W   + +A+++VK +K   +  G++FY   G+L   LPSGR+L+Y 
Sbjct  479  VDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTH-GVRFYMKKGFLMIELPSGRALAYP  537

Query  541  RPQIGIDERFGREEITYEGVMQGSKQWGRISTYGGKIAENMVQAIARDCLAEAMLRLDAA  600
            ++ +G ++  G + + + G ++ +++W+++ TYGGK+ EN+VQA ARD LA ++ RL+A+
Sbjct  538  KASVG-ENSWGSQVVEFMG-LDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEAS  595

Query  601  GYQIRFHVHDEVVIEVPNEQDAKADIERIMSEPIDWAPGLPMNADSFETGYYKKD  655
            G++I  HVHDEV++E+P   ++  +IE IM+ P+DWA GL +N+D+F + +Y KD
Sbjct  596  GFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

44) Clocel_0761 in NC_014393


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  534 bits (2017),  Expect = 5e-153, Method: Compositional matrix adjust.
 Identities = 320/651 (50%), Positives = 470/651 (73%), Gaps = 10/651 (1%)

Query  4    LSIDIETFSDVDLIKSGVYAYTASPNFEILLFAYAFDSDEVKIIDFASGeelpaei----  59
            ++IDIET+S  D+ K G Y YT + +FEIL++AY++D++ +  ID +  ++ P +     
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  60   -ieallneniiKSAFNAQFERICLSRHLNKKLTANAWQCTAVQAATLGFPLSLDGVAQVL  118
               AL++  + K AFNA+FER CL++H+NK++ ++ W CT V++  +G+P SLD V++VL
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  119  GLTEQKMKEGKELIRYFSIPCKPTRVNEGRTRNLPQHSSEKWNDFKKYCIRDVEVERAIR  178
             L +QK K GK+LIRYFSIPCKPT+VN GRTRNLP+H  EKW++F  YCIRDVEVE +I 
Sbjct  121  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  180

Query  179  KKLSRYPISENEQRNYILDHEINDRGVFVDLDLVARAMECDRLHKEDTFTEAQRLTGLDN  238
             K+  +P++  EQ   ++D++INDRG+ +   L+  A   D+  KE+ + +A+++TGL+N
Sbjct  181  HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN  240

Query  239  PNSVAQLKQWLIEN-GVEVDSLSKKAVSDLAKEADGEVERLLNLRLQLAKTSIKKYEAIE  297
            PNS +QL  WL ++ G+++ +L KK+V +  KEA G   ++L++RLQ++KTS+KKY+ ++
Sbjct  241  PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH  300

Query  298  RAVCPDKRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLKD--LTLARNLVKSGDFDTLA  355
              +C+D RVRGL+QFYGA  TGRWAGR VQ+QNL ++ + D  L +AR+L+K   FD L 
Sbjct  301  DMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLD  359

Query  356  LLFESVPH-VLSELIRTAFIPKSNHRFIVADFSAIEARVIAWLAGEKWRMDVFATHGKIY  414
            LL++  P+ +LS+L+RT+F +   + + V+DFSAIEARVIAW A E+WR+DVF THGKIY
Sbjct  360  LLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIY  419

Query  415  EASASQMFKVPIEEITKTSALRQKGKISELALGYGGSVGALTAMGALDMGVAEDELQGLV  474
            EASASQMF+VP+E ITK  +LRQKGK+SELALGY G+ GAL AMGAL+MG+ E+ELQGLV
Sbjct  420  EASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLV  479

Query  475  TAWRQANPNITKLWWdidkaaikavkkkttvmvgkikLQYESGIMFITLPSGRRLSYIKP  534
             +WR+ANPNI ++W   + AAI++VK + T     +++    G++ I LPSGR L+Y K+
Sbjct  480  DSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKA  539

Query  535  RIEPNKFERDAVTYEGIGATKKWERIETYGPKLVENIVQAIARDLLAEAMLRVAENGYEI  594
             +  N    + V + G++  +KW ++ TYG KLVENIVQA ARDLLA ++ R+  +G+ I
Sbjct  540  SVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKI  599

Query  595  VMHIHDEIVIEAPLNFGSLKDVCEVMAIAPTWAESLPLRADGFECEYYRKD  645
            V H+HDE+++E P    +LK++  +M  +  WA +L L +DGF   +Y KD
Sbjct  600  VGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

45) CLM_2673 in NC_012563


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  534 bits (2014),  Expect = 8e-153, Method: Compositional matrix adjust.
 Identities = 328/663 (50%), Positives = 470/663 (71%), Gaps = 24/663 (3%)

Query  4    LAIDVETYSSIDIKTSGAYKYCEAPDFEILLFAYAFNDEPVQIVDFTQHEALP-----QR  58
            + ID+ETYSS DI   GAYKY EA DFEIL++AY++++ ++  +D T+ +  P     + 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  59   VIDALYDPDVIKTAFNANFERS--AIKFGVSSLPCPPGQWECTMIKALTLGLPSSLDMVG  116
               AL+DP V K AFNANFER+  A  F       PP +W CTM++++ +GLP+SLD VG
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQM---PPEEWICTMVNSMRIGLPASLDKVG  117

Query  117  KALKLEEDKQKMKEGKALIQYFCKPCKPTKTNDKRTRNLPKHDMEKWETFKEYCKRDVEV  176
              L+L+++K+K   GK LI+YF  PCKPTK N+ RTRNLP HD+EKW+ F +YC RDVEV
Sbjct  118  EVLRLQNQKDK--AGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV  175

Query  177  EREIRNLLNRYETKAEEQKLWQLDQHINDRGIDTDLILIKQAIECDTNYTERLTKAAIKL  236
            E  I + ++ +   A EQ  W +DQHINDRGI     L+  A   D +  E L + A  +
Sbjct  176  EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI  235

Query  237  TGLENPNSPTQIKKWIGERLGREVKSLTKTSIPGLIEEAKDLNKSEVIKMLELRQLMAKT  296
            TGLENPNSPTQ+  W+ +  G ++ +L K ++   + EA +  K    KMLE+R  M+KT
Sbjct  236  TGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAK----KMLEIRLQMSKT  291

Query  297  SIKKYDTMQNARCKDGRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPD--LDNARNFV  354
            S+KKY+ M++  C D RVRGL+QFYGA  TGRWAGR VQ+QNL ++ ++D  L+ AR+++
Sbjct  292  SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI  350

Query  355  REGKFEEVEFLFDSVP-DTLSQLIRTAFIPREGNRFIVSDFSAIEARVIAWFAGEQWRLD  413
            +E +F+++++L++  P D LSQL+RT+F + EGN + VSDFSAIEARVIAW+A EQWRLD
Sbjct  351  KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD  410

Query  414  VFSTHGKIYEASASQMFKVPIESIKKGSELRQKGKIAELALGYGGSVGALSSMDR-KKSI  472
            VF+THGKIYEASASQMF+VP+ESI KG  LRQKGK++ELALGY G+ GAL +M+    +I
Sbjct  411  VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGI  470

Query  473  PEEELPGLVKSWRNANPNITKFWWDVDKAAKKAIRERTTVNLQYGLKFIYDPGVLFIQLP  532
             E+EL GLV SWRNANPNI +FW   + AA ++++ R T + + G++F    G L I+LP
Sbjct  471  EENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTH-GVRFYMKKGFLMIELP  529

Query  533  SGRKLSYIRPKIEPHETFSGDKITYEGMEQTSKQWKRIDTYGPKLVENIVQATSRDCLRE  592
            SGR L+Y ++ +  +++ +++ + + G++  +++W ++ TYG KLVENIVQAT+RD L  
Sbjct  530  SGRALAYPKASVG-ENSWGSQVVEFMGLD-LNRKWSKLKTYGGKLVENIVQATARDLLAI  587

Query  593  AMFRVNKEGYDIVMHVHDEVVLDIPKDRATVKEINELMGQPIKWAPGLPLKADGYECNYY  652
            ++ R++  G+ IV HVHDEV+++IP++   +KEI+ +M +P+ WA GL L++DG+   +Y
Sbjct  588  SIARLEASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFY  647

Query  653  MKD  655
            MKD
Sbjct  648  MKD  650

46) Bsel_0771 in NC_014219


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  531 bits (2003),  Expect = 6e-152, Method: Compositional matrix adjust.
 Identities = 325/651 (50%), Positives = 465/651 (72%), Gaps = 11/651 (1%)

Query  4    LNIDIESYSRTDLAKSGVYRYAEAPDFDILLFAYSVDAGPVHVVDLAQGETIP-----DV  58
            +NIDIE+YS  D++K G Y+Y+EA DF+IL++AYS+D+G++  +D+++ +  P     + 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  59   VRQALTDDGVIKWAFNAQFERTCLSRYLNTPIHPTSWRCSMVWSAYLGLPLSLEGAAIVT  118
             + AL D +V K AFNA+FERTCL++ +N  + P  W C+MV S  +GLP SL+  + V 
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  119  GADKKKLQEGKDLIRYFCKPCKPTQVNGGRERNFPHHDPEKWVAFKRYNQRDVETEQAIQ  178
              +++K + GK+LIRYF  PCKPT+VNGGR RN+P+HD EKW  F  Y  RDVE E +I 
Sbjct  121  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  180

Query  179  DKISRYPVPEQEWGHYVLDQIINDRGILLDPVFVEAAIACDTATREALMNRLRTLTKLEN  238
            +KI  +PV   E +  V+DQ INDRGI L   ++ +A   D  ++E L+N+ + +T LEN
Sbjct  181  HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN  240

Query  239  PNSVMQMKDWL-AEQGVETGALDKAAVHELLKSAQGDVAEVLTIRQKLAKSSVKKYTAMK  297
            PNS  Q+  WL  +QG++   L+K +V+E LK A G    +L IR +++K+SVKKY  M 
Sbjct  241  PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKMH  300

Query  298  QVAGKDDRARGLIQFYGANRSGRYAGRLIQVQNLPQNHVPD--LKEARDLVRASNLEALD  355
            ++   D+R RGL+QFYGA  +GR AGR +Q+QNL ++ ++D  L  ARDL++   ++ LD
Sbjct  301  DMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDLD  359

Query  356  MLYPSVP-DLLSELIRTAFIPKEHHQFIVADFSAIEARVIAWLAGEAWRNEVFATHGKIY  414
            +L    P DLLS+L+RT+F + E +++ V+DFSAIEARVIAW A E WR +VF THGKIY
Sbjct  360  LLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKIY  419

Query  415  EASASQMFNVPLEEIDKGSPLRQKGKISELALGYGGSVGALRAMGALDMGVEEEELKPLV  474
            EASASQMFNVP+E I KG PLRQKGK+SELALGY G+ GAL+AMGAL+MG+EE+EL+ LV
Sbjct  420  EASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLV  479

Query  475  QAWRQANPKIVQFWWavdqaaqkavkqRTTTSTHGISFTYQSGLLLVGLPSGRHLSYVKP  534
            ++WR+ANP+IV+FW A ++AA ++VK R T  THG+ F  + G+L++ LPSGR L+Y K+
Sbjct  480  DSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKA  539

Query  535  TIVLNDFGREGLCFEGIGATKKWERIDTYGPKLVENIVQAVSRDLLAHAMQRIEQEGYAI  594
            ++  N  G + + F G++  +KW ++ TYG KLVENIVQA +RDLLA ++ R+E  G+ I
Sbjct  540  SVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKI  599

Query  595  VMHVHDEVVVE-AKQHVTVSDICALMTDQPDWSSGLNLKAEGYACMFYQKD  644
            V HVHDEV+VE ++    + +I ++M    DW+ GLNL+++G++  FY KD
Sbjct  600  VGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

47) CD196_1449 in NC_013315


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  529 bits (1996),  Expect = 2e-151, Method: Compositional matrix adjust.
 Identities = 322/657 (50%), Positives = 473/657 (72%), Gaps = 15/657 (2%)

Query  4    LSIDIETYSDLDIKKVGVYRYVDSANFEILLFAYAFDNEEVKVIDL--VNDEELPKEVIE  61
            ++IDIETYS  DI K G Y+Y ++ +FEIL++AY++D   +  ID+  V++E +  +   
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  62   ---ALNDNKVIKSAFNANFERTAISKFLNINLKPNEWSCTMIKALTLGLPGSLDSVSKAL  118
               AL D  V K AFNANFERT ++K +N ++ P+EW CTM++++ +GLP+SLD V+  L
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  119  KFNEDKQKMKEGKALIQYFCKPCKATKVNKGRTRNLPIHDMEKWNKFKEYCKQDVVVERE  178
            +++++K+K   GK LI+YF  PCK+TKVN GRTRNLP HD+EKW++F +YC +DV VE  
Sbjct  121  RLQNQKDK--AGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMT  178

Query  179  IRNKLSKYKTTEREIKLWYLDQRINDTGIKVDTELIENAIECDKRYTEKLTKEAIKITGL  238
            I +K+  +  T  E   W +DQ+IND GIK+   L+  A   DK+  E L ++A  ITGL
Sbjct  179  IAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGL  238

Query  239  NNPNSPAQLKKWLSDKVGFEITSLTKESIPEILKQVDDENVVRILELRKLMSKTSIKKYE  298
            +NPNSP+QL  WL D  G++I +L K ++ E LK+  + +  ++LE+R  MSKTS+KKY+
Sbjct  239  ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATG-KAKKMLEIRLQMSKTSVKKYN  297

Query  299  AMKLAKGNDNRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHIED--LDLARNLLKEGDFD  356
             M     +D+RVRGL+QFYGA  TGRWAGR VQ+QNL ++ I D  L++AR+L+KE  FD
Sbjct  298  KMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFD  356

Query  357  LIELLYDSVP-DVLSQLIRTAFIPSEGHRFIVSDFSAIEARVIAWLAGEKWRLDVFNSHG  415
             ++LL +  P D+LSQL+RT+F + EG+ + VSDFSAIEARVIAW A E+WRLDVFN+HG
Sbjct  357  DLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHG  416

Query  416  KIYEASASQMFKIPIENIKKGSELRQKGKLAELSNGYGGSVGALISMGAIKMGLKEEELQ  475
            KIYEASASQMF++P+E+I KG  LRQKGK++EL+ GY G+ GAL +MGA+ MG+ E+ELQ
Sbjct  417  KIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQ  476

Query  476  PIVTAWRNANPNITKFWWDVDkaakkaIKDRTIVEIQHGIKFIYNPGVLFIELPSSRRLS  535
             +V +WRNANPNI +FW   + AA +++K R   +  HG++F  + G L IELPS+R L+
Sbjct  477  GLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHT-HGVRFYMKKGFLMIELPSGRALA  535

Query  536  YLRPKIEPHTTFSGDKITYEGMEQTSKQWKRIDTYGPKLVENIVQATARDCLREAMFNVT  595
            Y ++ +  + + +++ + + G++  +++W ++ TYG KLVENIVQATARD L  ++  + 
Sbjct  536  YPKASVG-ENSWGSQVVEFMGLD-LNRKWSKLKTYGGKLVENIVQATARDLLAISIARLE  593

Query  596  DAGYSIVMHVHDELVIDVDKKGGSLEEVNSIMGKEISWAKGLPLKADGYECDYYKKD  652
             +G+ IV HVHDE+++++ + + +L E+++IM K + WAKGL L++DG+   +Y KD
Sbjct  594  ASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

48) Thet_1675 in NC_014538


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  529 bits (1996),  Expect = 3e-151, Method: Compositional matrix adjust.
 Identities = 326/652 (50%), Positives = 469/652 (72%), Gaps = 13/652 (1%)

Query  4    LSIDIETFSSVDLAKSGVYRYAEAPDFEILLFGYSVDAGPVQVVDFACGEKIP-----KE  58
            ++IDIET+SS D++K G Y+Y+EA DFEIL+++YS+D+G++  +D +  ++ P       
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  59   IQQAILDNNVTKWAFNAQFERICLSKYFGIHLAPDSWRCTMVWSAYLGLPLSLEGAAIVT  118
            ++ A++D  V K AFNA+FER CL+K F  +++P+ W CTMV S  +GLP SL+  + V 
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  119  GADKKKLTKGKELIRYFSVPCKPTVTNGGRTRNLPEHAPEKWNSFKAYNLRDVEVELSIQ  178
              +++K   GK+LIRYFS+PCKPT  NGGRTRNLPEH  EKW+ F  Y +RDVEVE++I 
Sbjct  121  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  180

Query  179  EKLQKFPMPEEEWNNY-ILDQQINDRGIQLDLELVKKAIQCDEKVREELTSRLKELTDLD  237
            +K++ FP+   E + Y ++DQ+INDRGI+L   L+  A   D + +EEL ++ K++T+L+
Sbjct  181  HKIKDFPVTAIE-QAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLE  239

Query  238  NPNSVVQMKSWL-SEKGLETDSLDKASVKALLKEAPEHLSEVLELRQLLAKSSVKKYTAM  296
            NPNS  Q+ +WL  ++GL+  +L+K +V+  LKEA      +LE+R  ++K+SVKKY  M
Sbjct  240  NPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKM  299

Query  297  ENAVCTDGRARGLLQFYGANRTGRFAGRLIQVQNLPQNHLSD--LEQARRLVRGGHFDAL  354
            ++ +C+D R RGL+QFYGA  TGR AGR +Q+QNL ++ +SD  LE AR L++  +FD L
Sbjct  300  HDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDL  358

Query  355  EILYDSIP-GVLSELIRTAFVPKKGYKFIVADFSAIEARVIAWLAGETWRNEVFATHGKI  413
            ++L +  P ++LS+L+RT+F +  G  + V+DFSAIEARVIAW A E WR +VF THGKI
Sbjct  359  DLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKI  418

Query  414  YEASASQMFKVPLEEVTKGSPLRQKGKIAELALGYGGSVGALKAMGALDMGLTEEELKPL  473
            YEASASQMF+VP+E +TKG PLRQKGK++ELALGY G+ GALKAMGAL+MG+ E+EL+ L
Sbjct  419  YEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGL  478

Query  474  VYAWRNANPNIVRLWWDVDRAVKEAVTERCRTETHRIRFEYRSGMLLIWLPSGRQLTYVK  533
            V +WRNANPNIV +W   + A  ++V  R   +TH +RF  + G L+I LPSGR L+Y K
Sbjct  479  VDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPK  538

Query  534  PRMGINSFGSEAVTYEGVGATKKWERIESYGPKFVENIVQAISRDLLCHSMRNLDESGLN  593
            + +G NS GS+ V + G++  +KW ++ +YG K+VENIVQA +RDLL  S+  L+ SG++
Sbjct  539  ASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFK  598

Query  594  IVMHVHDEVVLEVPLEI-CVQDVCVLMGQVPPWAHGLLLRADGFECDFYKKD  644
            IV HVHDEV++E+P     ++++  +M +   WA GL L +DGF   FY KD
Sbjct  599  IVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

49) Teth514_1234 in NC_010320


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  529 bits (1996),  Expect = 3e-151, Method: Compositional matrix adjust.
 Identities = 326/652 (50%), Positives = 469/652 (72%), Gaps = 13/652 (1%)

Query  4    LSIDIETFSSVDLAKSGVYRYAEAPDFEILLFGYSVDAGPVQVVDFACGEKIP-----KE  58
            ++IDIET+SS D++K G Y+Y+EA DFEIL+++YS+D+G++  +D +  ++ P       
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  59   IQQAILDNNVTKWAFNAQFERICLSKYFGIHLAPDSWRCTMVWSAYLGLPLSLEGAAIVT  118
            ++ A++D  V K AFNA+FER CL+K F  +++P+ W CTMV S  +GLP SL+  + V 
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  119  GADKKKLTKGKELIRYFSVPCKPTVTNGGRTRNLPEHAPEKWNSFKAYNLRDVEVELSIQ  178
              +++K   GK+LIRYFS+PCKPT  NGGRTRNLPEH  EKW+ F  Y +RDVEVE++I 
Sbjct  121  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  180

Query  179  EKLQKFPMPEEEWNNY-ILDQQINDRGIQLDLELVKKAIQCDEKVREELTSRLKELTDLD  237
            +K++ FP+   E + Y ++DQ+INDRGI+L   L+  A   D + +EEL ++ K++T+L+
Sbjct  181  HKIKDFPVTAIE-QAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLE  239

Query  238  NPNSVVQMKSWL-SEKGLETDSLDKASVKALLKEAPEHLSEVLELRQLLAKSSVKKYTAM  296
            NPNS  Q+ +WL  ++GL+  +L+K +V+  LKEA      +LE+R  ++K+SVKKY  M
Sbjct  240  NPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKM  299

Query  297  ENAVCTDGRARGLLQFYGANRTGRFAGRLIQVQNLPQNHLSD--LEQARRLVRGGHFDAL  354
            ++ +C+D R RGL+QFYGA  TGR AGR +Q+QNL ++ +SD  LE AR L++  +FD L
Sbjct  300  HDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDL  358

Query  355  EILYDSIP-GVLSELIRTAFVPKKGYKFIVADFSAIEARVIAWLAGETWRNEVFATHGKI  413
            ++L +  P ++LS+L+RT+F +  G  + V+DFSAIEARVIAW A E WR +VF THGKI
Sbjct  359  DLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKI  418

Query  414  YEASASQMFKVPLEEVTKGSPLRQKGKIAELALGYGGSVGALKAMGALDMGLTEEELKPL  473
            YEASASQMF+VP+E +TKG PLRQKGK++ELALGY G+ GALKAMGAL+MG+ E+EL+ L
Sbjct  419  YEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGL  478

Query  474  VYAWRNANPNIVRLWWDVDRAVKEAVTERCRTETHRIRFEYRSGMLLIWLPSGRQLTYVK  533
            V +WRNANPNIV +W   + A  ++V  R   +TH +RF  + G L+I LPSGR L+Y K
Sbjct  479  VDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPK  538

Query  534  PRMGINSFGSEAVTYEGVGATKKWERIESYGPKFVENIVQAISRDLLCHSMRNLDESGLN  593
            + +G NS GS+ V + G++  +KW ++ +YG K+VENIVQA +RDLL  S+  L+ SG++
Sbjct  539  ASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFK  598

Query  594  IVMHVHDEVVLEVPLEI-CVQDVCVLMGQVPPWAHGLLLRADGFECDFYKKD  644
            IV HVHDEV++E+P     ++++  +M +   WA GL L +DGF   FY KD
Sbjct  599  IVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

50) CKL_2661 in NC_009706


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  528 bits (1993),  Expect = 4e-151, Method: Compositional matrix adjust.
 Identities = 318/656 (49%), Positives = 454/656 (70%), Gaps = 21/656 (3%)

Query  4    ISIDIETFSSANLQKCGVYRYAESDDFEILLFGYSVDGGAVQVVDLACGEKIP-----NE  58
            ++IDIET+SS ++ KCG Y+Y+E++DFEIL+++YS+DGGA+  +D++  ++ P     + 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  59   IINALMDNSVTKWAFNAMFERVCLSKWLNLTDYLDPTSWKCSMVWSAYMGLPLSLEGVGA  118
            +  AL D +V K AFNA FER CL+K  ++   + P  W C+MV S  +GLP SL+ VG 
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAK--HFNKQMPPEEWICTMVNSMRIGLPASLDKVGE  118

Query  119  VLGLEKQKLTEGKDLIKYFCTPCSPTKSNGGRVRNLPKHDMDKWERFKAYNIRDVEAEMS  178
            VL L++QK   GK+LI+YF  PC PTK NGGR RNLP HD++KW++F  Y IRDVE EM+
Sbjct  119  VLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMT  178

Query  179  IQQRLSKFPIP---ENIWSEYHLDQKINDRGIAIDMAFVKQAVKMDEQSREKLMALMQDI  235
            I +++  FP+    +  W    +DQ INDRGI +  +++  A  +D QS+E L+   ++I
Sbjct  179  IAHKIKDFPVTAIEQAYWV---FDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI  235

Query  236  TNLENPNSIQQMKEWL-ADNGLETDSLGKKAVAEMLKTAPEPLGTVLELRQQLAKSSIKK  294
            T LENPNS  Q+  WL  D+GL+  +L KK+V E LK A      +LE+R Q++K+S+KK
Sbjct  236  TGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKK  295

Query  295  YTAMENAVCNDGRARGMFQFYGANRTGRFSGRLIQLQNLPQNHMPD--LEQARALVRSGN  352
            Y  M++ +C+D R RG+FQFYGA  TGR +GR +QLQNL ++ ++D  LE AR L++   
Sbjct  296  YNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQR  354

Query  353  FDALTLIYDSIP-EVLSELIRTAFVPQEGMKFIVADFSAIEARVIAWLAGEKWRIDVFQN  411
            FD L L+ +  P ++LS+L+RT+F ++EG  + V+DFSAIEARVIAW A E+WR+DVF+ 
Sbjct  355  FDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNT  414

Query  412  GGDIYCASASQMFNVPVEKNGVNGHLRQKGKIAELALGYGGSVGALKSMGALEMGIEEEE  471
             G IY ASASQMFNVPVE     + LRQKGK++ELALGY G+ GALK+MGALEMGIEE+E
Sbjct  415  HGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENE  474

Query  472  LQPLVTAWRQSNPNITKLWWDVDHAVKTCVKQKIPTETHGIKFIYQSGMLFIVLPSGRRL  531
            LQ LV +WR++NPNI ++W   ++A    VK +   +THG++F  + G L I LPSGR L
Sbjct  475  LQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRAL  534

Query  532  SYVKPRMGENVFGGESVTYEGVGGTKKWERIESYGPKFVENIVQAISRDILCHAMQTLKN  591
            +Y K+ +GEN  G++ V + G++  +KW ++ +YG K+VENIVQA +RD+L  ++  L  
Sbjct  535  AYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEA  594

Query  592  CS--IVAHVHDEIIIEADM-RMSLSTICEQMARTPTWANGLLLSADGYECQFYQKD  644
             +  IV+HVHDE+I+E      +L  I   M +   WA+GL L++DG+   FY KD
Sbjct  595  SGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

51) CKR_2359 in NC_011837


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  528 bits (1993),  Expect = 4e-151, Method: Compositional matrix adjust.
 Identities = 318/656 (49%), Positives = 454/656 (70%), Gaps = 21/656 (3%)

Query  4    ISIDIETFSSANLQKCGVYRYAESDDFEILLFGYSVDGGAVQVVDLACGEKIP-----NE  58
            ++IDIET+SS ++ KCG Y+Y+E++DFEIL+++YS+DGGA+  +D++  ++ P     + 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  59   IINALMDNSVTKWAFNAMFERVCLSKWLNLTDYLDPTSWKCSMVWSAYMGLPLSLEGVGA  118
            +  AL D +V K AFNA FER CL+K  ++   + P  W C+MV S  +GLP SL+ VG 
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAK--HFNKQMPPEEWICTMVNSMRIGLPASLDKVGE  118

Query  119  VLGLEKQKLTEGKDLIKYFCTPCSPTKSNGGRVRNLPKHDMDKWERFKAYNIRDVEAEMS  178
            VL L++QK   GK+LI+YF  PC PTK NGGR RNLP HD++KW++F  Y IRDVE EM+
Sbjct  119  VLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMT  178

Query  179  IQQRLSKFPIP---ENIWSEYHLDQKINDRGIAIDMAFVKQAVKMDEQSREKLMALMQDI  235
            I +++  FP+    +  W    +DQ INDRGI +  +++  A  +D QS+E L+   ++I
Sbjct  179  IAHKIKDFPVTAIEQAYWV---FDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI  235

Query  236  TNLENPNSIQQMKEWL-ADNGLETDSLGKKAVAEMLKTAPEPLGTVLELRQQLAKSSIKK  294
            T LENPNS  Q+  WL  D+GL+  +L KK+V E LK A      +LE+R Q++K+S+KK
Sbjct  236  TGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKK  295

Query  295  YTAMENAVCNDGRARGMFQFYGANRTGRFSGRLIQLQNLPQNHMPD--LEQARALVRSGN  352
            Y  M++ +C+D R RG+FQFYGA  TGR +GR +QLQNL ++ ++D  LE AR L++   
Sbjct  296  YNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQR  354

Query  353  FDALTLIYDSIP-EVLSELIRTAFVPQEGMKFIVADFSAIEARVIAWLAGEKWRIDVFQN  411
            FD L L+ +  P ++LS+L+RT+F ++EG  + V+DFSAIEARVIAW A E+WR+DVF+ 
Sbjct  355  FDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNT  414

Query  412  GGDIYCASASQMFNVPVEKNGVNGHLRQKGKIAELALGYGGSVGALKSMGALEMGIEEEE  471
             G IY ASASQMFNVPVE     + LRQKGK++ELALGY G+ GALK+MGALEMGIEE+E
Sbjct  415  HGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENE  474

Query  472  LQPLVTAWRQSNPNITKLWWDVDHAVKTCVKQKIPTETHGIKFIYQSGMLFIVLPSGRRL  531
            LQ LV +WR++NPNI ++W   ++A    VK +   +THG++F  + G L I LPSGR L
Sbjct  475  LQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRAL  534

Query  532  SYVKPRMGENVFGGESVTYEGVGGTKKWERIESYGPKFVENIVQAISRDILCHAMQTLKN  591
            +Y K+ +GEN  G++ V + G++  +KW ++ +YG K+VENIVQA +RD+L  ++  L  
Sbjct  535  AYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEA  594

Query  592  CS--IVAHVHDEIIIEADM-RMSLSTICEQMARTPTWANGLLLSADGYECQFYQKD  644
             +  IV+HVHDE+I+E      +L  I   M +   WA+GL L++DG+   FY KD
Sbjct  595  SGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

52) DET1100 in NC_002936


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  528 bits (1993),  Expect = 4e-151, Method: Compositional matrix adjust.
 Identities = 324/672 (49%), Positives = 455/672 (68%), Gaps = 35/672 (5%)

Query  4    ISIDIETFSDIDLNKCGVYKYAESPNFEILLFGYAVDGGKVQVIDLAQGEHIP-----QE  58
            ++IDIET+S  D++KCG YKY+E+ +FEIL+++Y++DGG +  ID+++ ++ P     + 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  59   IIDALTDDEVTKWAFNANFERVCLSRYLSDLGVSLDPFHDNHPLSTECARFLNPEGWRCS  118
            +  AL D  V K AFNANFER CL++           F+ + P          PE W C+
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAK----------HFNKQMP----------PEEWICT  100

Query  119  MVWAATMGLPLSLKGVGQVLKLEDQKMDEGKALIKYFSVPCAPTKANGGRTRNMPFHDPE  178
            MV +  +GLP SL  VG+VL+L++QK   GK LI+YFS+PC PTK NGGRTRN+P HD E
Sbjct  101  MVNSMRIGLPASLDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLE  160

Query  179  KWETFKAYNKRDVEVEMAIQQRLTNFPVPDFVWDEYRI-DQEINDRGVRLDMDLVAKAIE  237
            KW+ F  Y  RDVEVEM+I +++ +FPV  +  + Y++ DQ+INDRG++L   L+  A  
Sbjct  161  KWQQFIDYCIRDVEVEMTIAHKIKDFPVTAIE-QAYWVFDQHINDRGIKLSKSLMLGANV  219

Query  238  MDTRSRTELTTAMKDITELDNPNSVQQMKQWLSDN-GLETDSLGKKVVAELIKTAPSELQ  296
            +D +S+ EL    K+IT L+NPNS  Q+  WL D+ GL+  +L KK V E +K A +  +
Sbjct  220  LDKQSKEELLNQAKHITGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAK  279

Query  297  TVLELRQQLAKSSVKKYQTMERAVCDDGRARGMFMFYGANRTGRWAGRLIQLQNLPQNHL  356
             +LE+R Q++K+SVKKY+ M+  +C D R RG+F FYGA  TGRWAGR +QLQNL ++ +
Sbjct  280  KMLEIRLQMSKTSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYI  338

Query  357  ED--LADARALVKSGDFDAVKLLYEDVP-DTLSQLIRTAFIPKDGTQLYVSDFSAIEARV  413
             D  L  AR L+K   FD + LL +  P D LSQL+RT+F + +G +L VSDFSAIEARV
Sbjct  339  SDTELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARV  398

Query  414  IAWYAGEMWRQKVFADGGDIYCASASQMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVG  473
            IAWYA E WR  VF   G IY ASASQMF+VPVE     + LRQKGK++ELALGY G+ G
Sbjct  399  IAWYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAG  458

Query  474  ALKAMGAIEMGLSEDELPPLVDAWRQTNPHIVKFWWDVDRAVMEAVKHKHTTSSYGLTFS  533
            ALKAMGA+EMG+ E+EL  LVD+WR++NP+IV+FW   + A +++VK + T  + G+ F 
Sbjct  459  ALKAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFY  518

Query  534  CRSGMLFITLPSGRNLAYVKPKVGTNKFGGECITYEGVGATKKWERLDSYGPKFVENIVQ  593
             + G L I LPSGR LAY K+ VG N  G++ + + G++  +KW +L +YG K+VENIVQ
Sbjct  519  MKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQ  578

Query  594  ATSRDILCYAMKTLRNCE--IVMHIHDELVIE-ADPHMSLDVLCEQMGRTPPWARGLQLR  650
            AT+RD+L  ++  L      IV H+HDE+++E +    +L  +   M +   WA+GL+L 
Sbjct  579  ATARDLLAISIARLEASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLN  638

Query  651  ADGYTTPFYKKD  662
            +DG+T+PFY KD
Sbjct  639  SDGFTSPFYMKD  650

53) LGAS_1473 in NC_008530


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  527 bits (1990),  Expect = 7e-151, Method: Compositional matrix adjust.
 Identities = 311/652 (48%), Positives = 460/652 (71%), Gaps = 13/652 (1%)

Query  4    ISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYATDLGPVKVVDLTQGEKIP-----QP  58
            ++IDIETYSS ++++ G Y+Y++++DFE+L+++Y+ D G++  +D+T+ ++ P     + 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  59   IVKALDDPTIIKSAFNAQFERVCLSRFVGHRLKPAGWHCSRVWSATLGLPLSLSDVGTVL  118
            +  AL DP++ K AFNA+FER CL++    ++ P  W C+ V S  +GLP SL  VG VL
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  119  GLPRQKITAGKELVRYFCTPCKPTKSNQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEIT  178
             L  QK  AGK+L+RYF  PCKPTK N  RTRN+P H  +KWQQF +Y  RDVEVEM I+
Sbjct  121  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  180

Query  179  QKLERFPVSQNEWENYWM-DQDINDRGIRIDQQLVNNAIKCQENFHDQYLQVSQKLTGLA  237
            +K+  FPV+  E + YW+ DQ+INDRGI++ + L+  A   + +  ++ L+ ++ +TGL 
Sbjct  181  HKIKDFPVTAIE-QAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLE  239

Query  238  NPNSPLQLKDWL-NQRGMNIDSLSKASVAQLLQTTTGKVHQVLSLRQLLSKSSVKKYQAM  296
            NPNSP QL  WL +++G++I +L K +V + L+ +TGK  ++L +R  +SK+SVKKY+ M
Sbjct  240  NPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKM  299

Query  297  QKAMCRDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPD--LEEARELVKQGNTTAL  354
            +  MC D RV+GL+QFYGA  TGRWAGR VQ+QNL ++ ++D  LE AR+L+K+     L
Sbjct  300  HDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDL  358

Query  355  SMLYDSVP-DVLSQLIRTAFIPSQGHHFYVADFSAVEARVIAWLSGEEWRQKAFANNEDI  413
             +L +  P D+LSQL+RT+F + +G+++ V+DFSA+EARVIAW + E+WR   F  +  I
Sbjct  359  DLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKI  418

Query  414  YCASASQMFGVPVVKHGVNGELRQKGKIAELALGYGGSIGALKAMGATNLGLTEEELHSL  473
            Y ASASQMF VPV      + LRQKGK++ELALGY G+ GALKAMGA ++G+ E+EL++L
Sbjct  419  YEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGL  478

Query  474  VQMWRNASPHIVQFWWDIDKAAKECIKSHLPQATHGIKFIYRSGCMFLRLRSGRKLCYSK  533
            V+ WRNA+P+IV+FW   + AA + +KS+  + THG++F  + G + + L SGR L Y+K
Sbjct  479  VDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPK  538

Query  534  PKIGINRFGSESITFMGINAVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEDAGNP  593
            + +G N  GS+ + FMG++  +KW ++ TYG+KLVENIVQAT+RDLLA ++ RLE +G  
Sbjct  539  ASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFK  598

Query  594  VVMHIHDEAVIDAP-ANYSLEKMVKIMTEVPRWADGLILNAAGFVSDFYKKD  644
            +V H+HDE +++ P ++ +L  +  IM     WA GL LN+ GF S FY KD
Sbjct  599  IVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

54) BCE_0377 in NC_003909


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  525 bits (1982),  Expect = 3e-150, Method: Compositional matrix adjust.
 Identities = 319/656 (49%), Positives = 454/656 (70%), Gaps = 21/656 (3%)

Query  4    ISIDIETFSGANLQKSGVYRYAESDDFEILLFGYSVDGGEVQVVDLACGEEIP-----DE  58
            ++IDIET+S+ ++ K G Y+Y+E++DFEIL+++YS+DGG +  +D++  ++ P     + 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  59   IINALLDDSVTKWAFNAMFERVCLSKWLNLTEYLDPASWKCSMIWSAYMGLPLSLEGVGA  118
            +  AL+D +V K AFNA FER CL+K  ++   + P  W C+M+ S  +GLP SL+ VG 
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAK--HFNKQMPPEEWICTMVNSMRIGLPASLDKVGE  118

Query  119  VLGLEKQKLTEGKDLIKYFCTPCSPTKSNGGRVRNLPEHDMDKWERFKAYNLRDVEAEMS  178
            VL L++QK   GK+LI+YF  PC PTK NGGR RNLPEHD++KW++F  Y +RDVE EM+
Sbjct  119  VLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMT  178

Query  179  IQQRFSKFLVP---ENIWEEYHLDQEINDRGIAIDMTFVKQAVVMDEHSREKLMALMQDI  235
            I +++  F V    +  W    +DQ+INDRGI +  +++  A V+D +S+E L+   ++I
Sbjct  179  IAHKIKDFPVTAIEQAYWV---FDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI  235

Query  236  TNLENPNSVQQMKDWL-ADNGLETDTLGKKAVAEMLKTAPEPLGTVLELRQQLAKSSVKK  294
            T LENPNS  Q+  WL  D+GL+   L KK+V E LK A      +LE+R Q++K+SVKK
Sbjct  236  TGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKK  295

Query  295  YTAMENAVCNDGRARGMFQFYGANRTGRFSGRLIQLQNLPQNHMPD--LEQARALVRSGN  352
            Y  M++ +C+D R RG+FQFYGA  TGR +GR +QLQNL ++ ++D  LE AR L++   
Sbjct  296  YNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQR  354

Query  353  FDALTLLYDSIP-EVLSELIRTAFIPREGMKFIVADFSAIEARVIAWLAGEKWRIDVFQN  411
            FD L LL +  P ++LS+L+RT+F + EG  + V+DFSAIEARVIAW A E+WR+DVF+ 
Sbjct  355  FDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNT  414

Query  412  GGDIYCASASQMFNVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKSMGALEMGIEEEE  471
             G IY ASASQMFNVPVE     + LRQKGK++ELALGY G+ GALK+MGALEMGIEE+E
Sbjct  415  HGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENE  474

Query  472  LQPLVTAWRQSNPNITKLWWDVDRAVKTCVKQKTPTETHGIKFIYQSGMLFIALPSGRRL  531
            LQ LV +WR++NPNI ++W   + A    VK +   +THG++F  + G L I LPSGR L
Sbjct  475  LQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRAL  534

Query  532  AYVKPRMGENMFGGESVTYEGVGGTKKWERIESYGPKFVENIVQAISRDILCHAMQTLKN  591
            AY K+ +GEN  G++ V + G++  +KW ++ +YG K+VENIVQA +RD+L  ++  L  
Sbjct  535  AYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEA  594

Query  592  CS--IVAHVHDEIIIEADMGT-SLSAICEQMAKMPTWANGLLLSADGYECQFYQKD  644
             +  IV+HVHDE+I+E   G+ +L  I   M K   WA+GL L++DG+   FY KD
Sbjct  595  SGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

55) DET0074 in NC_002936


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  521 bits (1965),  Expect = 7e-149, Method: Compositional matrix adjust.
 Identities = 322/658 (49%), Positives = 448/658 (69%), Gaps = 23/658 (3%)

Query  4    LSIDIETYSSANLAKSGVYRYVESPDFEILLFGYSVDGGEVQVVDLTSGEKLP-----SD  58
            ++IDIETYSS +++K G Y+Y E+ DFEIL+++YS+DGG +  +D+T  ++ P       
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  59   VITALTDETVIKWAFNANFERICLSRFLGLPTGKYINPASWKCSMVWAATMGLPLSLEGV  118
               AL D +V K AFNANFER CL++ +     K + P  W C+MV +  +GLP SL+ V
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFN----KQMPPEEWICTMVNSMRIGLPASLDKV  116

Query  119  GSVLKLDKQKLTEGKDLIKYFSQPCAPTKSNGQRTRNHLYHAPDKWSAFKKYNIRDIETE  178
            G VL+L++QK   GK+LI+YFS PC PTK NG RTRN   H  +KW  F  Y IRD+E E
Sbjct  117  GEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVE  176

Query  179  MSIQEKLTRFPV---QDSIWDEYHLDQEINDRGVALDMTLVQEAIAMDGRSRSELTTAMK  235
            M+I +K+  FPV   +++ W    +DQ+INDRG+ L  +L+  A  +D +S+ EL    K
Sbjct  177  MTIAHKIKDFPVTAIEQAYW---VFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAK  233

Query  236  HLTELDNPNSVQQMKQWL-ADNGMETDTLGKKIVAELLKTAPLDLADVLSLRQQLAKSSV  294
            H+T L+NPNS  Q+  WL  D+G++   L KK V E LK A      +L +R Q++K+SV
Sbjct  234  HITGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSV  293

Query  295  RKYQAMENAVCTDGRARGMFQFFGANRTGRWAGRLIQMQNLPQNHLED--LAEARALVRF  352
            +KY+ M++ +C+D R RG+FQF+GA  TGRWAGR +Q+QNL ++ + D  L  AR L++ 
Sbjct  294  KKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKE  352

Query  353  GDFDALEMLYEDVP-DTLSQLIRTAFVPKAGARLIVSDFSAIEARVIAWMAGEEWRQDVF  411
              FD L++L +  P D LSQL+RT+F +  G  L VSDFSAIEARVIAW A E+WR DVF
Sbjct  353  QRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVF  412

Query  412  AKGGDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMGALDMGLEE  471
               G IY ASASQMF+VPVE     + LRQKGK++ELALGY G+ GALKAMGAL+MG+EE
Sbjct  413  NTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEE  472

Query  472  DELPQLVDAWRQANPCIVKFWWDVDKAAMEAVRYKRTNSTHGITFSCQSGMLFITLPSGR  531
            +EL  LVD+WR+ANP IV+FW   + AA+++V+ ++T+ THG+ F  + G L I LPSGR
Sbjct  473  NELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGR  532

Query  532  RLAYVKPRIGENKFGGQCITYEGVGATKKWERLDSYGPKFVENIVQATARDILCNAMQTL  591
             LAY K+ +GEN  G+Q + + G++  +KW +L +YG K+VENIVQATARD+L  ++  L
Sbjct  533  ALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARL  592

Query  592  QHCS--IVMHVHDEIVIE-ADPRMSLKAVCEQMGRTPSWAKGLLLRADGYETDFYKKD  646
            +  +  IV HVHDE+++E +    +LK +   M +   WAKGL L +DG+ + FY KD
Sbjct  593  EASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

56) Acfer_1131 in NC_013740


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  521 bits (1965),  Expect = 7e-149, Method: Compositional matrix adjust.
 Identities = 321/672 (48%), Positives = 454/672 (68%), Gaps = 35/672 (5%)

Query  4    LSIDIETYSDVNLAKCGVYKYAESPAFEILLFGYAVDGGPVQVVDLAQGESIP-----EE  58
            ++IDIETYS  +++KCG YKY+E+  FEIL+++Y++DGG++  +D+++ ++ P     E 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  59   ILDALTDDTVTKWAFNANFERVCLSRHLTDLGRSLDPFHDQHPLSKKCARFLNPAGWKCS  118
            +  AL D +V K AFNANFER CL++H          F+ Q P          P  W C+
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKH----------FNKQMP----------PEEWICT  100

Query  119  MVWSAYLGLPLSLEGVGAVLNLDNQKMKEGRELIRYFCIPCKETKANGGRTRNLPQHALD  178
            MV S  +GLP SL+ VG VL L+NQK K G++LIRYF IPCK TK NGGRTRNLP+H L+
Sbjct  101  MVNSMRIGLPASLDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLE  160

Query  179  KWNLFKSYNKRDVEVEMAIQQRLQKYPVPKQVWEEY-HLDQEINDRGIAIDLELAKQAVA  237
            KW+ F  Y  RDVEVEM+I ++++ +PV   + + Y  +DQ+INDRGI +   L   A  
Sbjct  161  KWQQFIDYCIRDVEVEMTIAHKIKDFPVT-AIEQAYWVFDQHINDRGIKLSKSLMLGANV  219

Query  238  LDAKSRESLMAALKERTGLENPNSVIQMLDWL-EQHGLKTDSLGKKNVQELLKTAQEPLR  296
            LD +S+E L+   K+ TGLENPNS  Q+L WL +++GL   +L KK VQE LK A    +
Sbjct  220  LDKQSKEELLNQAKHITGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAK  279

Query  297  SVLLLRQKLAKSSVKKYQAMEMTACKDGRARGMFQFYGANRTGRFAGRHIQLQNLPQNHL  356
             +L +R +++K+SVKKY+ M+   C D R RG+FQFYGA  TGR AGR +QLQNL ++ +
Sbjct  280  KMLEIRLQMSKTSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYI  338

Query  357  PD--LSEARELVRQGNYEALDLLYDSIP-DVLSQLIRTAFVPRAGMKFVVSDFSAIEARV  413
            +D  L  AR+L+++  ++ LDLL +  P D+LSQL+RT+F +  G  + VSDFSAIEARV
Sbjct  339  SDTELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARV  398

Query  414  ISWLAGERWKSEDFAAGKDIYCSTASQMFGVPVVKHGINGNLRQKGKIAELACGYGGSVG  473
            I+W A E+W+ + F +   IY ++ASQMF VPV      + LRQKGK++ELA GY G+ G
Sbjct  399  IAWYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAG  458

Query  474  ALKAMGALDMGIPEEELGNLVQSWRSANPHIVDFWWQVDGAVKTTIKQRIPVWVNNIRFF  533
            ALKAMGAL+MGI E+EL  LV+SWR+ANP+IV+FW   + A   T+K R     + +RF+
Sbjct  459  ALKAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFY  518

Query  534  CQSGMLFIELPSGRRLSYVKPRIGENRFGGESVTYEGIGATKKWEQLESYGPKFVENIVQ  593
             + G L IELPSGR L+Y K+ +GEN  G++ V + G++  +KW +L +YG K+VENIVQ
Sbjct  519  MKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQ  578

Query  594  GISRDILCYAMQTLRCCA--IVGHVHDELIIECPKDT-SVDAICEEMGRTPPWAEGLVLR  650
            + +RD+L  ++  L   +  IVGHVHDE+I+E P+++ ++  I   M +   WA GL L 
Sbjct  579  ATARDLLAISIARLEASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLN  638

Query  651  ADGYACEFYQKD  662
            +DG++  FY KD
Sbjct  639  SDGFTSPFYMKD  650

57) SpiGrapes_2854 in NC_016633


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  520 bits (1961),  Expect = 1e-148, Method: Compositional matrix adjust.
 Identities = 315/656 (49%), Positives = 462/656 (71%), Gaps = 19/656 (2%)

Query  4    LSIDIETYSSINLAKSGVYRYCEAEDFEILLFGYSLDGGEVKVVDLARGEKIP-----KN  58
            ++IDIETYSS +++K G Y+Y EAEDFEIL+++YS+DGG +  +D+++ ++ P       
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  59   IVRAISDDGIIKWAFNATFERICLSRHLGLPTGTYLDPSSWRCTMIWSAYLGLPLSLMGV  118
            +  A+ D ++ K AFNA FER CL++H+       + P  W CTM+ S  +GLP SL  V
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQ----MPPEEWICTMVNSMRIGLPASLDKV  116

Query  119  GAVLGLQRQKLSEGKDLVRYFCTPCNPTITNGGRTRNEADDAPDKWKLFIEYNKRDVEVE  178
            G VL LQ QK   GK+L+RYF  PC+PT  NGGRTRN +++  +KW+ FI+Y  RDVEVE
Sbjct  117  GEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVE  176

Query  179  IAIHQRLYRLPVPDAIWDEY-LLDQGINDRGVLVDKNLVDNAIRMDKRAREELITRMKDL  237
            ++I +++  +PV  AI + Y ++DQ INDRG+ + K+L+  A  +DK+++EEL+ + K++
Sbjct  177  MTIAHKIKDFPVT-AIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI  235

Query  238  TDLENPNSVPQVKTWLSEN-GLEVDSLGKKDVMTALQDAPPQIQEVLELRLQLAKSSVKK  296
            T+LENPNS  Q+ +WL ++ GL++ +L KK V   L++A  + + +LE+RLQ++K+SVKK
Sbjct  236  TGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKK  295

Query  297  YQAMENAVCSDGRARGMFQFYGANRTGRWAGRLVQMQNLPQNHLED--LETARTLVTSGG  354
            Y+ M++ +CSD R RG+FQFYGA  TGRWAGR VQ+QNL ++ + D  LE AR L+    
Sbjct  296  YNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQR  354

Query  355  YEAVQILYSDVPNTL-SQLVRTAFIPRSGYRFIVSDFSAIEARVLSWLAGETWRMEIFAE  413
            ++ +++L +  P+ L SQLVRT+F +  G  + VSDFSAIEARV++W A E WR+++F  
Sbjct  355  FDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNT  414

Query  414  NGDIYCASASQMFKVPVEKHGQNAHLRQKGKIAELALGYGGSVGALKAMGALDMGLEEDE  473
            +G IY ASASQMF+VPVE   +   LRQKGK++ELALGY G+ GALKAMGAL+MG+EE+E
Sbjct  415  HGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENE  474

Query  474  LKPLVDVWRQSNPNIVQLWWDVDKVVKEAVRGKTTTNTHDINFSHESGFLFITLPSGRRL  533
            L+ LVD WR++NPNIV++W   +    ++V+++ T +TH++ F    GFL I LPSGR L
Sbjct  475  LQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRAL  534

Query  534  AYVKPRMGTNDFGNDCVTYEGVGATKKWERIETYGPKVVENIVQAISRDILCYSMQQLKD  593
            AY K+ +G N  G++ V + G++  +KW ++ TYG K+VENIVQA +RD+L  S+ +L  
Sbjct  535  AYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEA  594

Query  594  H--RICMHIHDEIVIEAP-DEMELETIEASMAASPSWADGLLLNADGFETKFYKKD  646
               +I  H+HDE+++E P +   L  IE+ M  +  WA GL LN+DGF + FY KD
Sbjct  595  SGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

58) CLJU_c36550 in NC_014328


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  519 bits (1958),  Expect = 2e-148, Method: Compositional matrix adjust.
 Identities = 316/656 (49%), Positives = 457/656 (70%), Gaps = 15/656 (2%)

Query  4    LAIDVETYCELDIKKVGAYKYCEHPSFQILLFAYAFNDEPVEVIDFAQGEELP-----QK  58
            + ID+ETY   DI K GAYKY E   F+IL++AY++++ ++  ID ++ ++ P     + 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  59   VKTALLNPGILKTAFNANFEINALKKYLINGIDAEDWQCTMVQSLILGLPGSLDMVGKVL  118
             K AL++P++ K AFNANFE   L K + + + +E+W CTMV+S+ +GLP+SLD VG VL
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  119  RFEEDKQKMKEGKALIQYFCKPCKPTKSNGGRTRNLPEHAPEKWEIFKKYNKQDVEVERA  178
            R++++K+K   GK LI+YF  PCKPTK NGGRTRNLPEH  EKW+ F  Y  +DVEVE +
Sbjct  121  RLQNQKDK--AGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMT  178

Query  179  IRNKLNRYPTTENEQRLWELDQCINDRGVGADIELIEKAIECNNSYNKRLTKEATELTGL  238
            I +K++ +P T  EQ  W +DQ INDRG+     L+  A   ++  +  L ++A ++TGL
Sbjct  179  IAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGL  238

Query  239  SNPNSPTQLKRWIGERVGHEVKSLTKDSIPTLIKESKDEKVKKILELRQLMAKTSIKKYE  298
             NPNSPTQL  W+ +  G ++ +L K ++   +KE+ + K KK+LE+R  M+KTS+KKY+
Sbjct  239  ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATG-KAKKMLEIRLQMSKTSVKKYN  297

Query  299  TMQRARCEDGRMRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPD--LDDARNFIRTGQFD  356
             M+   C D R+RGL+QFYGA  TGRWAGR VQ+QNL ++ ++D  L+ AR++I+  +FD
Sbjct  298  KMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFD  356

Query  357  KVEFLYDSIP-DTLSQLIRTAFIPKEGNRFIVADFSAIEARVIAWYAGEQWRLDVFNNNG  415
             +++L +  P D LSQL+RT+F + EGN + V+DFSAIEARVIAWYA EQWRLDVFN +G
Sbjct  357  DLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHG  416

Query  416  DIYCASASKMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALMSMDK-KKNIPEDELP  474
             IY ASAS+MF+VPVE     + LRQKGK++ELALGY G+ GAL +M+     I E+EL 
Sbjct  417  KIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQ  476

Query  475  GLVKDWRDASPHITKFWWDVDKAAKKAIRERTTVVLQFGLKFIYDPGVLFIQLPSGRKLA  534
            GLV  WR+A+P+I +FW   + AA ++++ R T   + G++F    G L I+LPSGR LA
Sbjct  477  GLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTH-GVRFYMKKGFLMIELPSGRALA  535

Query  535  YIRPKIEPGPYDKPIITYEGLQQTSKQWTTLETYGPKIVENIVQATARDCLGITMQRVED  594
            Y ++ +   + +  ++ + GL + +++W+ L TYG K+VENIVQATARD L+I++ R+E 
Sbjct  536  YPKASVGENSWGSQVVEFMGL-DLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEA  594

Query  595  KGFHIVMHVHDELICDVPKGKGTVEEICDIFGEPIEWAPGLPLKADGYECNYYMKD  650
             GF IV HVHDE+I ++P+G   + EI  I   P++WA GL L++DG+   +YMKD
Sbjct  595  SGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

59) HMPREF0538_20519 in NC_015697


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  519 bits (1958),  Expect = 2e-148, Method: Compositional matrix adjust.
 Identities = 309/652 (48%), Positives = 452/652 (70%), Gaps = 13/652 (1%)

Query  4    LSIDIETYSSTNLNQTGGYRYADSDDFELLLFGYAVDFGPVKVVDLTQGEKIP-----SQ  58
            ++IDIETYSS ++++ G+Y+Y++++DFE+L+++Y++D G++  +D+T+ ++ P       
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  59   IIQALDDPAIIKSAFNAQFERVCLSRFVGHRLKPAGWHCSRVWSATLGLPLSLRDVGTVL  118
            +  AL DPA+ K AFNA+FER CL++    ++ P  W C+ V S  +GLP SL  VG VL
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  119  GLPRQKITAGKELVRYFCTSCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEIT  178
             L  QK  AGK+L+RYF  +CKPTK N  RTRN+P H  +KWQQF +Y  RDVEVEM I+
Sbjct  121  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  180

Query  179  QKFSRFPVPQNEWENYWM-DQDINDRGIRIDQQLVNNAIKCQKEFHAQYLQTSQQLTGLA  237
            +K+  FPV   E + YW+ DQ+INDRGI++ + L+  A   +K+   + L+ ++++TGL 
Sbjct  181  HKIKDFPVTAIE-QAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLE  239

Query  238  NPNSPLQLKNWL-HQQGVETDSLAKASVAQLLQTTTGTVHQVLALRQLLSKSSVKKYQAM  296
            NPNSP QL  WL ++QG++  +L K +V + L+ +TG   ++L +R  +SK+SVKKY+ M
Sbjct  240  NPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKM  299

Query  297  QKAMCKDGCVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPD--LEEARALVKQGNTTAL  354
            +  MC D  V+GL+QFYGA  TGRWAGR VQ+QNL ++ ++D  LE AR L+K+     L
Sbjct  300  HDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDL  358

Query  355  AMLYESVP-DVLSQLIRTAFIPSKGHHFYVADFSAVEARVIAWLSGEEWRQAAFAKNEDI  413
             +L +  P D+LSQL+RT+F +  G+++ V+DFSA+EARVIAW + E+WR   F  +  I
Sbjct  359  DLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKI  418

Query  414  YCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGATKLGLTDDELPPL  473
            Y ASASQMF VPV      + LRQKGK++ELALGY G+ GALKAMGA  +G+ ++EL  L
Sbjct  419  YEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGL  478

Query  474  VQMWRNASPHIVQFWWDVDKAAKECIKTHLPQTTHGMKFIYRSGCMFLRLRSGRYLCYPQ  533
            V+ WRNA+P+IV+FW   + AA + +K++  + THG++F  + G + + L SGR L YP+
Sbjct  479  VDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPK  538

Query  534  PKIGINRFGSESITFMGNNTVKKWDRIETYGAKLVENIVQATSRDLLAGAMRRLETAGNP  593
            + +G N  GS+ + FMG +  +KW ++ TYG+KLVENIVQAT+RDLLA ++ RLE++G  
Sbjct  539  ASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFK  598

Query  594  VVMHIHDEAVIDAP-TDRSLDTIVKIMTEVPDWADGLILNAAGFVGGFYKKD  644
            +V H+HDE +++ P    +L  I  IM    DWA GL LN+ GF + FY KD
Sbjct  599  IVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

60) HMPREF0538_20474 in NC_015697


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  519 bits (1957),  Expect = 3e-148, Method: Compositional matrix adjust.
 Identities = 308/652 (48%), Positives = 454/652 (70%), Gaps = 13/652 (1%)

Query  4    ISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYATDFGPVKVVDLTQGEKIP-----PQ  58
            ++IDIETYSS ++++ G Y+Y++++DFE+L+++Y+ D G++  +D+T+ ++ P       
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  59   IIEVLDNPNIIKSAFNAQFERVCLSRFVGHRLKPTGWHCSRVWSATLGLPLSLRDIGSVL  118
            +   L +P + K AFNA+FER CL++    ++ P  W C+ V S  +GLP SL  +G VL
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  119  GLPRQKITAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEIT  178
             L  QK  AGK+L+RYF  PCKPTK N  RTRN+P H  +KWQQF +Y  RDVEVEM I+
Sbjct  121  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  180

Query  179  QKLECFPVPQNEWENYWM-DQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKELTGLA  237
            +K+  FPV   E + YW+ DQ+INDRGI++ + L+  A   ++   ++ L+ AK++TGL 
Sbjct  181  HKIKDFPVTAIE-QAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLE  239

Query  238  NPNSPLQLKDWL-QQQGIKTNSLSKASVAQLLQTTTGTVHQVLALRQLLSKSSVKKYQAM  296
            NPNSP QL  WL ++QG+   +L K +V + L+ +TG   ++L +R  +SK+SVKKY+ M
Sbjct  240  NPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYNKM  299

Query  297  QKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPD--LEEARELVKQGNVPAL  354
            +  MC D RV+GL+QFYGA  TGRWAGR VQ+QNL ++ ++D  LE AR+L+K+     L
Sbjct  300  HDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDL  358

Query  355  AMLYDSVP-DVLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESFAKNEDI  413
             +L +  P D+LSQL+RT+F +   +++ V+DFSA+EARVIAW ++E+WR + F  +  I
Sbjct  359  DLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKI  418

Query  414  YCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGATKLGLTDDELPPL  473
            Y ASASQMF VPV      + LRQKGK++ELALGY G+ GALKAMGA  +G+ ++EL  L
Sbjct  419  YEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGL  478

Query  474  VQMWRNASPHIVQFWWDVDKAAKECIKTHLPQTTHGMKFIYRSGCMFLRLRSGRYLCYPQ  533
            V+ WRNA+P+IV+FW   + AA + +K++  + THG++F  + G + + L SGR L YP+
Sbjct  479  VDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPK  538

Query  534  PKIGINRFGSESITFMGINTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATGNT  593
            + +G N  GS+ + FMG++  +KW ++ TYG+KLVENIVQAT+RDLLA ++ RLEA+G  
Sbjct  539  ASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFK  598

Query  594  VVMHIHDEAVIDAP-FNRSLDTMVQLMTKVPDWANGLILNAAGFVSDFYKKD  644
            +V H+HDE +++ P  + +L  +  +M K  DWA+GL LN+ GF S FY KD
Sbjct  599  IVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

61) CLJU_c03390 in NC_014328


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  518 bits (1953),  Expect = 6e-148, Method: Compositional matrix adjust.
 Identities = 321/656 (49%), Positives = 460/656 (71%), Gaps = 16/656 (2%)

Query  4    ISIDIETFSSVNLQKSGVYRYAESEDFDILLFGYSVDGGEVKVIDLARGEKIPIE-----  58
            ++IDIET+SS ++ K G Y+Y+E+EDF+IL+++YS+DGG +  ID+++ ++ P++     
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  59   IINALTDDSVIKWAFNAQFERICLSKWLGMKAGTYLSPKSWQCTMIWAATLGLPLSLEGV  118
            +  AL D +V K AFNA+FER CL+K +  +    ++P  W CTM+ +  +GLP SL+ V
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQ----MPPEEWICTMVNSMRIGLPASLDKV  116

Query  119  GAVLGFKKQKLSQGKNLIKYFCIPCSPTKSNGGRTRNLPHHDIEKWKMFTFYNKRDVETE  178
            G VL +++QK   GKNLI+YF IPC PTK NGGRTRNLP+HD+EKW+ F  Y  RDVE E
Sbjct  117  GEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVE  176

Query  179  MAIQNKLSKFPVSKTEWQNY-HLDQIINDGGINLDMDFVRQAISCDEKFKAENIKKAKEL  237
            M+I +K+  FPV+  E Q Y  +DQ IND GI+L   ++  A   D + K E +++AK++
Sbjct  177  MTIAHKIKDFPVTAIE-QAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI  235

Query  238  TGLENPNSPAQLKDWLLK-QGMKTDSLSKAVVSELLQDSDGEIHEALSIRQQLAKSSVKK  296
            TGLENPNSP+QL  WL   QG+   +L K  V E L+++ G     L IR Q++K+SVKK
Sbjct  236  TGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKK  295

Query  297  YTSMENVVCSDSRARGLIQFYGANRTGRYSGRLIQVQNLPQNHLPD--LKQARSLVKSGN  354
            Y  M++++CSD R RGL+QFYGA  TGR +GR +Q+QNL ++ ++D  L  AR L+K   
Sbjct  296  YNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQR  354

Query  355  FTALDLLYDSIP-SVLSELIRTAFIPRYGSRFIVADFSAIEARVIAWLAGERWRIDVFAG  413
            F  LDLL +  P  +LS+L+RT+F +  G+ + V+DFSAIEARVIAW A E+WR+DVF  
Sbjct  355  FDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNT  414

Query  414  GGDIYCASASQMFNVPVKKNGINGHLRQKGKIAELALGYGGSVGALKAMGAIQMGLVEDE  473
             G IY ASASQMFNVPV      + LRQKGK++ELALGY G+ GALKAMGA++MG+ E+E
Sbjct  415  HGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENE  474

Query  474  LKPIVDAWRNSNPNITSLWWRIDRAVKTVVKTKQPIEIYGIGIFYQSGILFIKLPSGRRL  533
            L+ +VD+WRN+NPNI ++W   + A    VK+++  +  G+ ++ + G+L I LPSGR L
Sbjct  475  LQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRAL  534

Query  534  AYVKPLIGENRFGGESVTYEGVGGTKKWERIESYGPKFVENIVQAISRDILAEAMLKLAT  593
            AY K+ +GEN  G++ V + G++  +KW ++ +YG K+VENIVQA +RD+LA ++ +L +
Sbjct  535  AYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEA  594

Query  594  HEFQIVMHVHDEVVIEAPNKVSSVEEICRIMSETPAWAKGLILNADGYECEFYKKE  649
              F+IV HVHDEV++E P   +++ EI  IM+    WAKGL LN+DG+   FY K+
Sbjct  595  SGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

62) Acin_1361 in NC_016077


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  517 bits (1949),  Expect = 1e-147, Method: Compositional matrix adjust.
 Identities = 313/674 (47%), Positives = 454/674 (68%), Gaps = 39/674 (5%)

Query  7    ISIDIETFSDINLAKCGVYKYAESPAFEILLFGYSVDGGEVQVVDLAQGEGIP-----DD  61
            ++IDIET+S  +++KCG YKY+E+  FEIL+++YS+DGG +  +D+++ +  P     + 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  62   ILDALTDESVTKWAFNASFERVCLSRYLCDLGMSLDPFRDHHPLSQDCARFLNPAGWKCS  121
            +  AL D +V K AFNA+FER CL++           F  + P          P  W C+
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAK----------HFNKQMP----------PEEWICT  100

Query  122  MVWSAYMGLPLSLEGVGAVLKLDSQKIKEGKDLIRYFCVPCKETKSNGGRTRNLPQHALD  181
            MV S  +GLP SL+ VG VL+L++QK K GK+LIRYF +PCK TK NGGRTRNLP+H L+
Sbjct  101  MVNSMRIGLPASLDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLE  160

Query  182  KWTLFKSYNKRDVEVEMAIQERLKKYPVP---EPIWDEYHLDQEINDRGIAIDRTLAKNA  238
            KW  F  Y  RDVEVEM+I +++K +PV    ++ W    +DQ+INDRGI + ++L   A
Sbjct  161  KWQQFIDYCIRDVEVEMTIAHKIKDFPVTAIEQAYW---VFDQHINDRGIKLSKSLMLGA  217

Query  239  IVIDARSRDSLMAVLKEKTGLENPNSVIQMIGWL-EQHGMKTDSLGKKQVEKLLKTAEEP  297
             V+D +S++ L+   K+ TGLENPNS  Q+++WL +++G+   +L KK V+  LK A   
Sbjct  218  NVLDKQSKEELLNQAKHITGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGK  277

Query  298  LRSVLLLRQKLAKSSVRKYQAMGMTACEDGRARGMFQFYGANRTGRFAGRHIQLQNLPQN  357
             + +L +R +++K+SV+KY+ M    C D R RG+FQFYGA  TGR AGR +QLQNL ++
Sbjct  278  AKKMLEIRLQMSKTSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKH  336

Query  358  HLPD--LSEARELVRQGNYEAMELLYDSIP-DVLSQLIRTAFVPRQGLKFAVADFSAIEA  414
             ++D  L  AR+L+++  ++ ++LL +  P D+LSQL+RT+F + +G  +AV+DFSAIEA
Sbjct  337  YISDTELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEA  396

Query  415  RVLSWLAGETWRSDVFARNGDIYCASASSMFGVPVEKHGVNGHLRQKGKIAELALGYGGS  474
            RV++W A E WR DVF  +G IY ASAS MF VPVE     + LRQKGK++ELALGY G+
Sbjct  397  RVIAWYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGG  456

Query  475  VGALKAMGALDMGLTENELYPLVRSWRSANPHIVDFWWQVDAAVKTAIKERIPMRTGCIR  534
             GALKAMGAL+MG+ ENEL  LV SWR+ANP+IV+FW   + A   ++K R   +T  +R
Sbjct  457  AGALKAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVR  516

Query  535  FLYQSGMLFIQLPSGRRLSYIKPRIGENRFGGESVTYEGIGATKKWERLESYGPKFVENI  594
            F  + G L I+LPSGR L+Y K+ +GEN  G++ V + G++  +KW +L +YG K+VENI
Sbjct  517  FYMKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENI  576

Query  595  VQGISRDILCYAMQTLRCCA--IVGHVHDELIIECSKDT-SVDAICEQMGRTPSWAEGLL  651
            VQ+ +RD+L  ++  L   +  IVGHVHDE+I+E ++++ ++  I   M +   WA GL 
Sbjct  577  VQATARDLLAISIARLEASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLN  636

Query  652  LRADGYECEFYKKD  665
            L +DG+   FY KD
Sbjct  637  LNSDGFTSPFYMKD  650

63) Acin_1997 in NC_016077


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  516 bits (1945),  Expect = 2e-147, Method: Compositional matrix adjust.
 Identities = 313/674 (47%), Positives = 454/674 (68%), Gaps = 39/674 (5%)

Query  4    ISIDIETFSDVNLAKCGVYKYAESPAFEILLFGYAIDGGKVQVVDLARGERIP-----DD  58
            ++IDIET+S  +++KCG YKY+E+  FEIL+++Y+IDGG +  +D+++ +  P     + 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  59   ILDALTDESVTKWAFNASFERVCLSRYLRDLRISLDPFHDHHPLSRDCARFLNPAGWKCS  118
            +  AL D +V K AFNA+FER CL++           F+ + P          P  W C+
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAK----------HFNKQMP----------PEEWICT  100

Query  119  MIWSAYMGLPLSLEGAGAVLKLDSQKMKEGKDLIRYFCVPCKETKLNGGRTRNLPRHAPD  178
            M+ S  +GLP SL+  G VL+L++QK K GK+LIRYF +PCK TK+NGGRTRNLP H  +
Sbjct  101  MVNSMRIGLPASLDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLE  160

Query  179  KWTLFKSYNKRDVEVEMVIQERLKKYPVP---EPIWDEYHLDQEINDRGIAIDRTLAENA  235
            KW  F  Y  RDVEVEM I +++K +PV    ++ W    +DQ+INDRGI + ++L   A
Sbjct  161  KWQQFIDYCIRDVEVEMTIAHKIKDFPVTAIEQAYW---VFDQHINDRGIKLSKSLMLGA  217

Query  236  IVIDARSRDSLMAVLKGKTGLENPNSVIQMIGWL-EQHGMKTDSLGKKQVQELLKTAEEP  294
             V+D +S++ L+   K  TGLENPNS  Q+++WL +++G+   +L KK VQE LK A   
Sbjct  218  NVLDKQSKEELLNQAKHITGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGK  277

Query  295  LRSVLLLRQKLAKSSVKKYQAMEMTACEDSRARGMFQFYGANRTGRFAGRHIQLQNLPQN  354
             + +L +R +++K+SVKKY+ M+   C D R RG+FQFYGA  TGR AGR +QLQNL ++
Sbjct  278  AKKMLEIRLQMSKTSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKH  336

Query  355  HLPD--LAEARELVRQGNYEALELLYDSIP-DVLSQLIRTAFVPRKGMKFVVSDFSAIEA  411
             ++D  L  AR+L+++  ++ L+LL +  P D+LSQL+RT+F +  G  + VSDFSAIEA
Sbjct  337  YISDTELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEA  396

Query  412  RVLSWLAGETWRLDVFARNGDIYCASASSMFGVPVEKHGVNGHLRQKGKIAELALGYGGS  471
            RV++W A E WRLDVF  +G IY ASAS MF VPVE     + LRQKGK++ELALGY G+
Sbjct  397  RVIAWYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGG  456

Query  472  TGALKAMGALDMGLTENELYPLVQSWRSANPHIVDFWWQVDATVKTAIKEQIPMRAGCIR  531
            +GALKAMGAL+MG+ ENEL  LV+SWR+ANP+IV+FW   + +   ++K +   ++  +R
Sbjct  457  AGALKAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVR  516

Query  532  FLCQSGMLFIQLPSGRRLSYVKPRIGENRFGGESVTYEGIGATKKWERLESYGPKFVENI  591
            F  + G L I+LPSGR L+Y K+ +GEN  G++ V + G++  +KW +L +YG K+VENI
Sbjct  517  FYMKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENI  576

Query  592  VQGISRDILCYAMQTLRCCA--IVGHVHDELIIECSRDA-SVDAICEQMGRTPPWAEGLL  648
            VQ+ +RD+L  ++  L   +  IVGHVHDE+I+E +R++ ++  I   M +   WA GL 
Sbjct  577  VQATARDLLAISIARLEASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLN  636

Query  649  LRADGYECEFYQKD  662
            L +DG+   FY KD
Sbjct  637  LNSDGFTSPFYMKD  650

64) LMOSLCC2755_1750 in NC_018587


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  516 bits (1945),  Expect = 3e-147, Method: Compositional matrix adjust.
 Identities = 332/655 (51%), Positives = 465/655 (71%), Gaps = 18/655 (2%)

Query  4    LSLDLETYSSVDLSKCGVYKYSESPDFEILLFAYSVDGGPVEVVDLKMDETIP-----AE  58
            +++D+ETYSS D+SKCG YKY+E+ DFEIL++AYS+DGG++  +D+   +  P       
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  59   ILTSLSDETVIKHAFNASFERVCLSRFLGLDGFLNPRGWQCTMVWGATlglplslvgvga  118
            +  +L D +V K AFNA+FER CL++ +  +  + P  W CTMV +  +GLP SL  VG 
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQ--MPPEEWICTMVNSMRIGLPASLDKVGE  118

Query  119  vlglDKQKLTEGKDLIRYFCVPCNPTKVNGGRTRNLPHHAPTKWSAFKTYNSRDVEVEIA  178
            VL L++QK   GK+LIRYF +PC+PTKVNGGRTRNLP+H   KW  F  Y  RDVEVE++
Sbjct  119  VLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMT  178

Query  179  IQGKLSNFPVLDSVWKEYWL-DQEINDRGIEIDKDFVEAAVQLDELSKAGLNQQLQELTG  237
            I  K+ +FPV  ++ + YW+ DQ+INDRGI + K ++ +A  LD  SK  L +Q +++TG
Sbjct  179  IAHKIKDFPV-TAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG  237

Query  238  LENPNSVLQMRGWLLD-HGLETESLGKKAVAELLEQPIDENLKQVLVLRQQLAKSSVKKY  296
            LENPNS  Q+ +WL D +GL+  +L KK+V E L ++ +   K++L +R Q++K+SVKKY
Sbjct  238  LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKA-KKMLEIRLQMSKTSVKKY  296

Query  297  QAMQNFACSDNRSRGLFQFYGANRTGRFAGRGIQLQNLPQNHMSD--LSEARSLVKQSNF  354
            + M++  CSD+R RGLFQFYGA  TGR AGRG+QLQNL ++ +SD  L  AR L+K+  F
Sbjct  297  NKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRF  355

Query  355  EMLNILYGNVP-NVLSELLRTAFVPREGMKFIVSDFSAIEARVIAWLSGEKWRQEVFKNG  413
            + L++L    P ++LS+L+RT+F + EG  + VSDFSAIEARVIAW + E+WR +VF+  
Sbjct  356  DDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTH  415

Query  414  GDIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMDALEMGLTEDEL  473
            G IY ASASQMF VPVE     + LRQKGK++ELALGY G+ GALKAM+ALEMG+ E+EL
Sbjct  416  GKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENEL  475

Query  474  QPLVNSWRDSNINITELWWAVDKAVKTCVKERRSTSTHGIKFEYKSGFLFIQLLSGRKLV  533
            Q LV+SWR++N NI ++W A + A    VK R++  THG++F  K GFL I+L SGR L 
Sbjct  476  QGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALA  535

Query  534  YVKPKIGENKFGGEAVTYEGVGATKKWERLESYGPKFVENIVQAIARDILCFAMENL--R  591
            Y K+ +GEN  G++ V + G++  +KW +L +YG K+VENIVQA ARD+L +++  L   
Sbjct  536  YPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEAS  595

Query  592  KYRIVGHVHDEVIIEVPMESK-VEDICQLMSQTPKWAEGLLLNADGYECEFYQKD  645
             ++IVGHVHDEVI+E+P  S+ + +I  +M++   WA GL LN+DG+   FY KD
Sbjct  596  GFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

65) M643_03765 in NC_021826


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  516 bits (1945),  Expect = 3e-147, Method: Compositional matrix adjust.
 Identities = 332/655 (51%), Positives = 465/655 (71%), Gaps = 18/655 (2%)

Query  4    LSLDLETYSSVDLSKCGVYKYSESPDFEILLFAYSVDGGPVEVVDLKMDETIP-----AE  58
            +++D+ETYSS D+SKCG YKY+E+ DFEIL++AYS+DGG++  +D+   +  P       
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  59   ILTSLSDETVIKHAFNASFERVCLSRFLGLDGFLNPRGWQCTMVWGATlglplslvgvga  118
            +  +L D +V K AFNA+FER CL++ +  +  + P  W CTMV +  +GLP SL  VG 
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQ--MPPEEWICTMVNSMRIGLPASLDKVGE  118

Query  119  vlglDKQKLTEGKDLIRYFCVPCNPTKVNGGRTRNLPHHAPTKWSAFKTYNSRDVEVEIA  178
            VL L++QK   GK+LIRYF +PC+PTKVNGGRTRNLP+H   KW  F  Y  RDVEVE++
Sbjct  119  VLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMT  178

Query  179  IQGKLSNFPVLDSVWKEYWL-DQEINDRGIEIDKDFVEAAVQLDELSKAGLNQQLQELTG  237
            I  K+ +FPV  ++ + YW+ DQ+INDRGI + K ++ +A  LD  SK  L +Q +++TG
Sbjct  179  IAHKIKDFPV-TAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG  237

Query  238  LENPNSVLQMRGWLLD-HGLETESLGKKAVAELLEQPIDENLKQVLVLRQQLAKSSVKKY  296
            LENPNS  Q+ +WL D +GL+  +L KK+V E L ++ +   K++L +R Q++K+SVKKY
Sbjct  238  LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKA-KKMLEIRLQMSKTSVKKY  296

Query  297  QAMQNFACSDNRSRGLFQFYGANRTGRFAGRGIQLQNLPQNHMSD--LSEARSLVKQSNF  354
            + M++  CSD+R RGLFQFYGA  TGR AGRG+QLQNL ++ +SD  L  AR L+K+  F
Sbjct  297  NKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRF  355

Query  355  EMLNILYGNVP-NVLSELLRTAFVPREGMKFIVSDFSAIEARVIAWLSGEKWRQEVFKNG  413
            + L++L    P ++LS+L+RT+F + EG  + VSDFSAIEARVIAW + E+WR +VF+  
Sbjct  356  DDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTH  415

Query  414  GDIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMDALEMGLTEDEL  473
            G IY ASASQMF VPVE     + LRQKGK++ELALGY G+ GALKAM+ALEMG+ E+EL
Sbjct  416  GKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENEL  475

Query  474  QPLVNSWRDSNINITELWWAVDKAVKTCVKERRSTSTHGIKFEYKSGFLFIQLLSGRKLV  533
            Q LV+SWR++N NI ++W A + A    VK R++  THG++F  K GFL I+L SGR L 
Sbjct  476  QGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALA  535

Query  534  YVKPKIGENKFGGEAVTYEGVGATKKWERLESYGPKFVENIVQAIARDILCFAMENL--R  591
            Y K+ +GEN  G++ V + G++  +KW +L +YG K+VENIVQA ARD+L +++  L   
Sbjct  536  YPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEAS  595

Query  592  KYRIVGHVHDEVIIEVPMESK-VEDICQLMSQTPKWAEGLLLNADGYECEFYQKD  645
             ++IVGHVHDEVI+E+P  S+ + +I  +M++   WA GL LN+DG+   FY KD
Sbjct  596  GFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

66) Mahau_2841 in NC_015520


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  515 bits (1942),  Expect = 4e-147, Method: Compositional matrix adjust.
 Identities = 317/662 (48%), Positives = 452/662 (69%), Gaps = 24/662 (3%)

Query  6    IDIETYSGTDLGKSGVYRYSEAPDFEVLLFGYCADDDEVRVIDLASGEALPTEV-----L  60
            IDIETYS+ D++K G Y+Y+EA DFE+L+++Y  D++ +  ID++  +  P +       
Sbjct  3    IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFETFK  62

Query  61   DALTDETVVKWAHNAQFERVCLSRWLERQGINLKALNGNSNFLNPASWRCTMVWSAYLGL  120
             AL D +V K A NA+FER CL++ +++Q             + P  W CTMV S  +GL
Sbjct  63   IALFDPAVKKYAFNANFERTCLAKHFNKQ-------------MPPEEWICTMVNSMRIGL  109

Query  121  PLSLEGAALVTGAEKQKLTEGKELIRYFSSPCKPTKSNGGRTRNLPVHAPDKWEKYKEYN  180
            P SL+  + V   ++QK   GK+LIRYFS PCKPTK NGGRTRNLP H  +KW+++ +Y 
Sbjct  110  PASLDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYC  169

Query  181  ARDVETEMAIMKRLSKFPVPEDEWKYYILDQEINDRGICLDMDLIREAIRCDRRSRTVLT  240
             RDVE EM+I  ++  FPV   E  Y ++DQ+INDRGI L   L+  A   D++S+  L 
Sbjct  170  IRDVEVEMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELL  229

Query  241  EAVRDITDLDNPNSVAQMKAWF-AENGLETETLGKAAVKELLKTAPESFREVLALRQDLA  299
            +  ++IT+L+NPNS +Q+ AW+  ++GL+   L K +V+E LK A    + +L +R +++
Sbjct  230  NQAKHITGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMS  289

Query  300  KSSVKKYTAMENAVCSDGRVRGLLQFYGANRTGRFAGRLIQVQNLPQNHLPD--LVQARQ  357
            K+SVKKY  M++ +CSD RVRGL+QFYGA  TGR AGR +Q+QNL ++ ++D  L  AR+
Sbjct  290  KTSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARD  348

Query  358  LVKSGDFDALEILYDSVP-GVLSELIRTAFVPMPGYKFIVADFSAIEARVIAWLAGEQWR  416
            L+K   FD L++L +  P ++LS+L+RT+F +  G  + V+DFSAIEARVIAW A EQWR
Sbjct  349  LIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWR  408

Query  417  NEVFASHGKIYEASASQMFRVPIEEITKGSPLRQKGKIAELALGYGGSVGALKAMGALDM  476
             +VF +HGKIYEASASQMF VP+E ITKG PLRQKGK++ELALGY G+ GALKAMGAL+M
Sbjct  409  LDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEM  468

Query  477  GLAEDELQPLVTAWRAANPNITRLWWDVDRAAKTAVREKTAEQTHNILFEYRSGFLFITL  536
            G+ E+ELQ LV +WR ANPNI  +W   + AA  +V+ + +++TH + F  + GFL I L
Sbjct  469  GIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIEL  528

Query  537  PSGRKLAYVKPRIEANRFGSDSITYEGVGASKKWERIESYGPKFVENIVQAISRDILCYA  596
            PSGR LAY K+ +  N  GS+ + + G++ ++KW ++ +YG K+VENIVQA +RD+L  +
Sbjct  529  PSGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAIS  588

Query  597  MQRLSSMGFSIVMHIHDEVVIETSCDVSP-EIVCRIMSETPPWAEGLFLCADGFECQFYK  655
            + RL + GF IV H+HDEV++E + + +    +  IM+    WA GL L +DGF   FY 
Sbjct  589  IARLEASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYM  648

Query  656  KD  657
            KD
Sbjct  649  KD  650

67) Clocel_4001 in NC_014393


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  513 bits (1934),  Expect = 2e-146, Method: Compositional matrix adjust.
 Identities = 321/670 (48%), Positives = 455/670 (68%), Gaps = 33/670 (4%)

Query  7    LSIDIETYSSIDLAKCGVYKYSESSDSEVLLFAYSVDGGSVIVIDVANGESIP-----DE  61
            ++IDIETYSS D++KCG YKY+E+ D E+L++AYS+DGG++  ID+++ ++ P     + 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  62   ILQALVDDSVIKWAFNAAFERVFLSIWLKRNYPELFCSYSIPEDSVGNYLDPSAWRCSMI  121
            +  AL D +V K AFNA FER  L+  ++++ P                  P  W C+M+
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMP------------------PEEWICTMV  102

Query  122  WSAYMGLPLSLEGVGAVLGLEEQKLKEGKDLIRYFCKPCAATKVNGGRTRNLPEHAPDKW  181
             S  +GLP SL+ VG VL L++QK K GK+LIRYF  PC +TKVNGGRTRNLPEH  +KW
Sbjct  103  NSMRIGLPASLDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKW  162

Query  182  ELFKAYNKRDVEVEMNIQKKLSHYPVPEFVWEEY-HLDQEINDRGIALDMDVVENAIRID  240
            + F  Y  RDVEVEM I  K+ ++PV  +  + Y  +DQ+INDRGI L   ++  A  +D
Sbjct  163  QQFIDYCIRDVEVEMTIAHKIKDFPVTAIE-QAYWVFDQHINDRGIKLSKSLMLGANVLD  221

Query  241  AISKATLMATMQDLTDLENPNSVAQMKGWL-AAKGVDTDSLDKKAVIELLKTVPTDVADV  299
              SK  L+   +++T+LENPNS +Q+ +WL   +G+D  +L+KK+V E LK        +
Sbjct  222  KQSKEELLNQAKHITGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKM  281

Query  300  LTLRQQLAKSSVKKYQAMQNAVCDDGRARGMFQFYGANRSGRWAGRIIQLQNLPQNHMED  359
            L +R Q++K+SVKKY+ M++ +C D R RG+FQFYGA  +GRWAGR +QLQNL ++ + D
Sbjct  282  LEIRLQMSKTSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISD  340

Query  360  --LDVARDIVKSGDYEILNMFYDNVP-GVLSELIRTAFIPREGYKFAVADFSAIEARVIA  416
              L++ARD++K   ++ L+++ +  P ++LS+L+RT+F + EG  +AV+DFSAIEARVIA
Sbjct  341  TELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIA  400

Query  417  HLAKERWRMKVFADNGDIYCASASAMFGVPVEKHGQNAHLRQKGKIAELALGYGGSVGAL  476
              AKE+WR+ VF  +G IY ASAS MF VPVE   +   LRQKGK++ELALGY G+ GAL
Sbjct  401  WYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGAL  460

Query  477  TSMGALDMGLAEEELQPLVDAWRAANPNIVQFWWDVDNAVKRAIKERTATKTHGIRFIYK  536
             +MGAL+MG+ E+ELQ LVD+WR ANPNIV+FW   ++A   ++K R +  THG+RF  K
Sbjct  461  KAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMK  520

Query  537  SAMLFIVLPSGRRLAYVKPRIGENKFGGESVTYEGVGTNKKWERIESYGPKFVENIVQAI  596
             + L I LPSGR LAY K+ +GEN  G++ V + G++ N+KW ++ +YG K+VENIVQA 
Sbjct  521  KGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQAT  580

Query  597  SRDILCYALRTLSHC-F-IVGHVHDEVIIE-CRQDASLEAICEQMGRVPEWIEGLLLRAD  653
            +RD+L  ++  L    F IVGHVHDEVI+E  R   +L  I   M +  +W  GL L +D
Sbjct  581  ARDLLAISIARLEASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSD  640

Query  654  GYETQFYKKD  663
            G+ + FY KD
Sbjct  641  GFTSPFYMKD  650

68) EF0325 in NC_004668


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  512 bits (1931),  Expect = 3e-146, Method: Compositional matrix adjust.
 Identities = 325/661 (50%), Positives = 462/661 (70%), Gaps = 22/661 (3%)

Query  4    LNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLT-ISEIP-----DE  57
            +NIDIETYS +D++K G YKY+++ +FEIL++AYS+DG ++   D+T + + P     + 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  58   IVAALTDKNVLKIAFNAQFERVCLSKYLGIPYYLDPAQWHCTMVHANELGLPASLGQCAK  117
            +  AL D  V K AFNA+FER CL+K +     + P +W CTMV++  +GLPASL++ + 
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQ--MPPEEWICTMVNSMRIGLPASLDKVGE  118

Query  118  YLNIEQQKDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQDVNVEMA  177
             L +++QKD  G +LI +FS PCKPTK NG RTRNLPEH  EKWQ FI+YCI+DV+VEM+
Sbjct  119  VLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMT  178

Query  178  IANKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLNEMKALTGL  237
            IA+K++ FPV   E     +DQ+INDRG  +   L  +A  +  +  E  LN+ K +TGL
Sbjct  179  IAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGL  238

Query  238  ENPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALALGNLPENVAEVLKLRLSLSNSSTKKY  296
            ENPNS +QL  WL ++QG  + +L K  V   L   +   +   +L +RL +S++S KKY
Sbjct  239  ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLK--EATGKAKKMLEIRLQMSKTSVKKY  296

Query  297  LMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLS--EIDFARQLVKAKDV  354
              M++  CSD+R++G++QFYGA  TGRWAGR +Q+QNL ++Y+S  E+++AR+L+K +  
Sbjct  297  NKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRF  355

Query  355  EGIELMYEDVP-DTLKQLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDWVLEVFRTH  413
            ++++L+ +  P D L QL+RT + A EG+ + VSDFSAIEARVIAWYAK++W L+VF TH
Sbjct  356  DDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTH  415

Query  414  GKIYEATAAQMFHLGEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKAMGALENGI  473
            GKIYEA+A+QMF++   +        G  +RQ+GKV+ LALGYQGG+GALKAMGALE GI
Sbjct  416  GKIYEASASQMFNVPVES-----ITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGI  470

Query  474  EEHELQDIVDRWRTANKRIKNFWHETQKAVIDCLQNGGIKKGPRGLKFYKKAGFLFIQLP  533
            EE+ELQ++VD WR AN  I NFW   Q A I+ +++       +G++FY K GFL I+LP
Sbjct  471  EENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHH-THGVRFYMKKGFLMIELP  529

Query  534  SGRKLAYAKAHLKEGDYGPAIF-YEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAM  592
            SGR LAY+KA + E   G+ +  + G + +   +  +TYGGKLVENIVQATARD+LA ++
Sbjct  530  SGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISI  589

Query  593  QRLEREGYPIVFHVHDEAVAEVPEGEKSIEEMNKIMSVVPDWAEGLPLNAEGFETKYYMK  652
             RLE  G+ IV HVHDE + E+P G +++ E++ IM+   DWA GL LN++GF + +YMK
Sbjct  590  ARLEASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK  649

Query  653  D  653
            D
Sbjct  650  D  650

69) gp21 in NC_018221


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  512 bits (1930),  Expect = 4e-146, Method: Compositional matrix adjust.
 Identities = 324/661 (50%), Positives = 463/661 (71%), Gaps = 22/661 (3%)

Query  4    LNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLT-ISEIP-----DE  57
            +NIDIETYS +D++K G YKY+++ +FEIL++AYS+DG ++   D+T + + P     + 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  58   IVAALTDKNVLKIAFNAQFERVCLSKYLGVPYYLDPAQWHCTMVHANELGLPASLGQCAK  117
            +  AL D  V K AFNA+FER CL+K +     + P +W CTMV++  +GLPASL++ + 
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQ--MPPEEWICTMVNSMRIGLPASLDKVGE  118

Query  118  YLNIEQQKDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQDVNVEMA  177
             L +++QKD  G +LI +FS PCKPTK NG RTRNLPEH  EKWQ FI+YCI+DV+VEM+
Sbjct  119  VLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMT  178

Query  178  IANKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLNEMKELTGL  237
            IA+K++ FPV   E     +DQ+INDRG  +   L  +A  +  +  E  LN+ K++TGL
Sbjct  179  IAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGL  238

Query  238  ENPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALALGNLPENVAEVLKLRLSLSNSSTKKY  296
            ENPNS +QL  WL ++QG  + +L K  V   L   +   +   +L +RL +S++S KKY
Sbjct  239  ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLK--EATGKAKKMLEIRLQMSKTSVKKY  296

Query  297  LMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLS--EIDFARQLVKAKDV  354
              M++  CSD+R++G++QFYGA  TGRWAGR +Q+QNL ++Y+S  E+++AR+L+K +  
Sbjct  297  NKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRF  355

Query  355  EGIELMYEDVP-DTLKQLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDWVLEVFRTH  413
            ++++L+ +  P D L QL+RT + A EG+ + VSDFSAIEARVIAWYAK++W L+VF TH
Sbjct  356  DDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTH  415

Query  414  GKIYEATAAQMFHLGEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKAMGALENGI  473
            GKIYEA+A+QMF++   +        G  +RQ+GKV+ LALGYQGG+GALKAMGALE GI
Sbjct  416  GKIYEASASQMFNVPVES-----ITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGI  470

Query  474  EEHELQDIVDRWRTANKRIKNFWHETQKAVIDCLQNGGIKKGPRGLKFYKKAGFLFIQLP  533
            EE+ELQ++VD WR AN  I NFW   Q A I+ +++       +G++FY K GFL I+LP
Sbjct  471  EENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHH-THGVRFYMKKGFLMIELP  529

Query  534  SGRKLAYAKAHLEQGDYGPAIF-YEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAM  592
            SGR LAY+KA + +   G+ +  + G + +   +  +TYGGKLVENIVQATARD+LA ++
Sbjct  530  SGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISI  589

Query  593  LRLEREGYPIVFHVHDEAVAEVPDGEKSIEEMNEIMSVVPDWAEGLPLNAEGFETKYYMK  652
             RLE  G+ IV HVHDE + E+P G +++ E++ IM+   DWA GL LN++GF + +YMK
Sbjct  590  ARLEASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK  649

Query  653  D  653
            D
Sbjct  650  D  650

70) HMPREF0669_00204 in NC_022111


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  510 bits (1924),  Expect = 1e-145, Method: Compositional matrix adjust.
 Identities = 305/658 (47%), Positives = 456/658 (70%), Gaps = 22/658 (3%)

Query  138  LSIDIETYSDNEITN-GVHNYVDTPNFEILLFAYSCDGGSVQLVDLAQGEEIP-----AK  191
            ++IDIETYS N+I++ G  +Y ++ +FEIL++AYS DGG++  +D+++ ++ P       
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  192  ILDALTDSNIIKTAFNASFERVCIGKHLGLTLDPSQWHCTQIRALMLGLPASLQSCGEVL  251
            +  AL D+ + K AFNA+FER C++KH+   + P +W CT + ++ +GLPASL+  GEVL
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  252  KLKHKKLREGAELIKYFSIPCKPTKSNGGRTRNLPEHAPDKWAQFKRYCIRDVEVEKAIQ  311
            +L+++K + G +LI+YFSIPCKPTK NGGRTRNLPEH  +KW QF  YCIRDVEVE +I 
Sbjct  121  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  180

Query  312  RKVCNNTLNPVTPFERALYIFDQTMNDKGVCIDSELANNAIRMNDEAQDELFAEMQEITN  371
            +K+ +    PVT++E+A  +FDQ +ND+G+ +   L   A  ++ ++++EL+ + ++IT 
Sbjct  181  HKIKDF---PVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG  237

Query  372  LENPNSPVQLKQWLSSKLGRPIQSLAKEDAKELATGASEDVKRVLYLRSMSSKTSVKKYE  431
            LENPNSP QL  WL    G  I +L K   +E    A+   K++L +R   SKTSVKKY+
Sbjct  238  LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYN  297

Query  432  AMTLAKCSDNKLHDLLQFYGAKTGRWAGRIVQVHNLPRN--SSKDLALARELVKKNDFEL  489
             M    CSD+++++L+QFYGA TGRWAGR VQ++NL ++  S  +L +AR+L+K + F+ 
Sbjct  298  KMHDMMCSDERVRGLFQFYGAGTGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDD  357

Query  490  LELTFG-NVCDILSQLIRTAFIAKENYTLCVCDFSAIEARVIAWLAGEEWRLKVFRGSGR  548
            L+L +  +  D+LSQL+RT+F A E   L V DFSAIEARVIAW A E+WRL VF   G+
Sbjct  358  LDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGK  417

Query  549  IYEASAARMFGVDEKTITHDSPLRQKGKIAELALGYEGGANALKIMGADKMGLSDPEIAQ  608
            IYEASA++MF V   +IT + PLRQKGK++ELALGY+GGA ALK MGA  MG+ + E+  
Sbjct  418  IYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQG  477

Query  609  IVSGWRNSSPNIVKLWRDVERAAKEAILSDRIIKLKQGGLIFRKTSNILQIKLPSGRLLS  668
            +V +WRN++PNIV++W+  + AA +++   R     +G  ++ K + +L I LPSGR L+
Sbjct  478  LVDSWRNANPNIVNFWKACQEAAINTV-KSRKTHHTHGVRFYMKKG-FLMIELPSGRALA  535

Query  669  YPLAKIVDNK-----ICYMSQNQTTRQWVDTETYGGKLVENIVQAIARDCLGETILRVDK  723
            YP A + +N      + +M+ +   R+W    TYGGKLVENIVQA ARD L+ +I R++ 
Sbjct  536  YPKASVGENSWGSQVVEFMGLD-LNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEA  594

Query  724  KGYNICFHVHDEIIAEVPTDESAKALQDIKNIFATPITFAPDLPLKGEGYITPYYLKD  781
             G++I  HVHDE+I E+P   ++++L++I  I   P+  A +L L+++G+ +P+Y+KD
Sbjct  595  SGFKIVGHVHDEVIVEIPR--GSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

71) CL3_07160 in NC_021024


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  506 bits (1909),  Expect = 2e-144, Method: Compositional matrix adjust.
 Identities = 310/656 (48%), Positives = 446/656 (68%), Gaps = 19/656 (2%)

Query  4    LSIDLETYSDQPLAKTGVYRYVESPDFEILLFAYSVDGAPVQQIDLACGEKIP-----SE  58
            ++ID+ETYS + ++K G Y+Y E+ DFEIL++AYS+DG+++  ID++  ++ P       
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  59   ILCALEDDKVTKWAFNANFERICLSRFLGYPTGDYLEPDSWKCSMVWAAYMGLPLSLEGA  118
            +  AL D  V K AFNANFER CL++ +       + P+ W C+MV +  +GLP SL+  
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQ----MPPEEWICTMVNSMRIGLPASLDKV  116

Query  119  GAVLGLEKQKLAEGKDLIKYFCQPCAPTKSNGQRTRNLPKHSPDKWLAFKKYNIRDVETE  178
            G VL L++QK   GK+LI+YF  PC PTK NG RTRNLP H  +KW  F  Y IRDVE E
Sbjct  117  GEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVE  176

Query  179  MSIQARLLKYPVPDSVWEEY-HLDQEINDRGVGLDMELVRQAIQMDGRSRSELTQAMKEL  237
            M+I  ++  +PV     + Y  +DQ+INDRG+ L   L+  A  +D +S+ EL +  K++
Sbjct  177  MTIAHKIKDFPVTAIE-QAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI  235

Query  238  TSLDNPNSVQQMKQWL-ADNGVETDTLGKKAVAELLKTAPQQLQKVLTLRQQLAKSSVKK  296
            T+L+NPNS  Q+  WL  D+G++   L KK+V E LK A  + +K+L +R Q++K+SVKK
Sbjct  236  TGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKK  295

Query  297  YQAMETAVCADGRARGMFQFYGANRTGRWAGRIIQMQNLPQNHLDD--LTEARGLVRAGG  354
            Y+ M+  +C+D R RG+FQFYGA  TGRWAGR +Q+QNL ++ + D  L  AR+L++   
Sbjct  296  YNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQR  354

Query  355  FDALEMLYEDVP-DTLSQLIRTAFVPQGNRKFIVADFSAIEARVIAWLADEKWRQDVFAE  413
            FD L++L +  P D LSQL+RT+F ++    + V+DFSAIEARVIAW A E+WR DVF  
Sbjct  355  FDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNT  414

Query  414  GKDIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMGALEMGLSEDE  473
               IY ASASQMF VPVE     + LRQKGK++ELALGY G+ GALKAMGALEMG+ E+E
Sbjct  415  HGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENE  474

Query  474  LPALVSAWRQANPKIVQFWWAVDRAVMDAVTRKTTTKTHGIIFSARNGMLFITLPSGRSL  533
            L +LV +WR+ANP+IV+FW A + A +++V  + T  THG+ F  ++G L I LPSGR+L
Sbjct  475  LQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRAL  534

Query  534  SYVKPKIGENRFGGDCITYEGVGGTKKWERIDSYGPKFVENIVQATSRDILCYAMKTLRC  593
            +Y K+ +GEN  G++ + + G++  +KW ++ +YG K+VENIVQAT+RD+L  ++  L  
Sbjct  535  AYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEA  594

Query  594  CS--IVMHIHDEVVIEADR-RMSLQAVCDQMGRTPPWANGLQLRADGYETDFYKKD  646
             +  IV H+HDEV++E  R   +L+ +   M +   WA+GL+L +DG+ + FY KD
Sbjct  595  SGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

72) Clopa_0561 in NC_021182


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  504 bits (1901),  Expect = 7e-144, Method: Compositional matrix adjust.
 Identities = 316/664 (48%), Positives = 459/664 (70%), Gaps = 24/664 (3%)

Query  4    LSIDIETFSSINLGKAGLYKYVQSPDFEILLFAYSLDGEPVQIVDLAQGEKIPF-----S  58
            ++IDIET+SS +++K G YKY ++ DFEIL++AYS+DG ++  +D+++ ++ PF     +
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  59   ILQMLADPRVIKHAYNAPFEWYCLNKFYYSPL--EQWHCTMFHGLYCGYtaglaatgtal  116
            +   L DP V K A+NA FE+ CL K +   +  E+W CTM +++  G  A+L   G  L
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  117  glPEDKKKMGIGKALIRLFCLPCKPTAKNGHRTRNMHYHEPEKWNLFKEYCKQDVVTEME  176
             L ++K K   GK LIR F +PCKPT  NG RTRN+  H+ EKW+ F +YC +DV  EM 
Sbjct  121  RLQNQKDK--AGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMT  178

Query  177  IENRLSAFPVSDQEQRLWELDQRMNADGVKVGQELIEGALYCHQTITDSLMEEAISLSGL  236
            I +++  FPV+  EQ  W +DQ++N  G+K+++ L+ GA   ++   + L+++A  ++GL
Sbjct  179  IAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGL  238

Query  237  DNPKSVQQLSKWIEQETGEETADLTKETVKSLIKITDNDVVKRMLEIRQELSKTSVKKYT  296
            +NP+S  QL  W+ ++ G + ++L K TV+  +K +     K+MLEIR ++SKTSVKKY 
Sbjct  239  ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGK-AKKMLEIRLQMSKTSVKKYN  297

Query  297  AMKEAVCLDGRVRGLLQFYGANRTGRWAGRIVQVQNLPRSYIET--LSHARDCVKGRKID  354
             M + +C D RVRGL+QFYGA  TGRWAGR VQ+QNL + YI    L  ARD +K +++D
Sbjct  298  KMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFD  356

Query  355  ALKLIYGSVP-DTLSQLIRTAFVPSKGNLFVDADFSAIEARVIAWLAGEQWRIDVFNSHG  413
             L L+    P D LSQL+RT+F +  GN +  +DFSAIEARVIAW A EQWR+DVFN+HG
Sbjct  357  DLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHG  416

Query  414  KIYEASASQMFGVPIELIKKGNPEYALRQKGKVAELALGYQGASGALIAMGALNMGLTEE  473
            KIYEASASQMF VP+E I KG+P   LRQKGKV+ELALGYQG++GAL AMGAL+MG+ E+
Sbjct  417  KIYEASASQMFNVPVESITKGDP---LRQKGKVSELALGYQGGAGALKAMGALEMGIEEN  473

Query  474  ELPEIVRRWRSSNKRIVDLWYSIENAAISVMKTGQAAGVKNIIIAHEGDYATGQDFLTIT  533
            EL  +V  WR++N  IV++W + ++AAI+ +K+      ++   +H   +   ++FL I 
Sbjct  474  ELQGLVDSWRNANPNIVNFWKACQEAAINTVKS------RKTHHTHGVRFYMKKGFLMIE  527

Query  534  LPSGRKLFYARPFIAQNDWGKDSIQYHGMNQNTKKWETVPTYGGKLVENIVQAIARDCLA  593
            LPSGR L Y+++ +++N WG + +++ G++ N +KW  + TYGGKLVENIVQA ARD LA
Sbjct  528  LPSGRALAYPKASVGENSWGSQVVEFMGLDLN-RKWSKLKTYGGKLVENIVQATARDLLA  586

Query  594  ENIKRLSELGYKVVFHVHDEVIIDCPKEYADLDRVCEIMSQPIPWAQGLPLGADGFTAEF  653
             +I RL   G+K+V HVHDEVI++ P+   +L  +  IM++P+ WA+GL L +DGFT+ F
Sbjct  587  ISIARLEASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPF  646

Query  654  YKKE  657
            Y K+
Sbjct  647  YMKD  650

73) Acin_1878 in NC_016077


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  503 bits (1898),  Expect = 1e-143, Method: Compositional matrix adjust.
 Identities = 314/672 (47%), Positives = 446/672 (67%), Gaps = 35/672 (5%)

Query  23   ISIDIETYSDVNLAKCGVYKYAESPDFEILLFGYAVDGREVKVVDLAQEETIP-----EE  77
            ++IDIETYS  +++KCG YKY+E+ DFEIL+++Y++DG  +  +D+++ +  P     E 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  78   ILEALTDDSITKWAFNANFERVCLSRYLTDLGRSLDPFHDRHPLSQECARFLNPAGWKCS  137
            +  AL D ++ K AFNANFER CL++           F+ + P          P  W C+
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAK----------HFNKQMP----------PEEWICT  100

Query  138  MVWSAYMGLPLSLEGVGAVLNLDNQKMKEGRDLIRYFCVPCKETKTNGGRTRNLPQHAPD  197
            MV S  +GLP SL+ VG VL L+NQK K G++LIRYF +PCK TK NGGRTRNLP+H  +
Sbjct  101  MVNSMRIGLPASLDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLE  160

Query  198  KWNLFKSYNKRDVEVEMAIQERLQKYPVPDTVWEEY-HQDQEINDRGIAIDLELARQAVA  256
            KW+ F  Y  RDVEVEM+I ++++ +PV     + Y   DQ+INDRGI +   L   A  
Sbjct  161  KWQQFIDYCIRDVEVEMTIAHKIKDFPVTAIE-QAYWVFDQHINDRGIKLSKSLMLGANV  219

Query  257  MDAKSRESLMAALKEKTGLENPNSVLQMLRWL-EARGLKSDSLGKKQVKELLKTAQEPLR  315
            +D +S+E L+   K+ TGLENPNS  Q+L WL + +GL   +L KK V+E LK A    +
Sbjct  220  LDKQSKEELLNQAKHITGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAK  279

Query  316  SVLQLRQKLAKSSVKKYQAMEITACQDGRARGMFQFYGANRTGRYAGRHIQIQNLPQNHL  375
             +L++R +++K+SVKKY+ M+   C D R RG+FQFYGA  TGR AGR +Q+QNL ++ +
Sbjct  280  KMLEIRLQMSKTSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYI  338

Query  376  PD--LSEARELVRQGNYEALELLYDSVP-DVLSQLIRTAFVPREGMKFVVSDFSAIEARV  432
            +D  L  AR+L+++  ++ L+LL +  P D+LSQL+RT+F + EG  + VSDFSAIEARV
Sbjct  339  SDTELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARV  398

Query  433  ISWMAGEKWKSAAFAAGKDIYCSTASQMFGVPVVKHGVNGELRQKGKIAELACCYGGSVG  492
            I+W A E+W+   F +   IY ++ASQMF VPV      + LRQKGK++ELA  Y G+ G
Sbjct  399  IAWYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAG  458

Query  493  ALKAMGALDMGIPEEELSSLVQSWRSANPHIVDFWWQVDGAVKTAIKQRIPVWVNNIRFF  552
            ALKAMGAL+MGI E+EL +LV+SWR+ANP+IV+FW   + A   ++K R     + +RF+
Sbjct  459  ALKAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFY  518

Query  553  CKSGMLFIELPSGRRLSYVKPRIGENKFGGESVTYEGIGATKKWERLESYGPKFVENIVQ  612
             K G L IELPSGR L+Y K+ +GEN  G++ V + G++  +KW +L +YG K+VENIVQ
Sbjct  519  MKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQ  578

Query  613  GTARDILCYAMQTLRCCA--IVGHVHDELIIEC-RKDVSVDAICQQMSRTPPWAEGLILR  669
            +TARD+L  ++  L   +  IVGHVHDE+I+E  R   ++  I   M++   WA GL L 
Sbjct  579  ATARDLLAISIARLEASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLN  638

Query  670  ADGYECEFYQKD  681
            +DG+   FY KD
Sbjct  639  SDGFTSPFYMKD  650

74) EFAU004_01640 in NC_017022


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  503 bits (1898),  Expect = 1e-143, Method: Compositional matrix adjust.
 Identities = 314/670 (47%), Positives = 449/670 (68%), Gaps = 33/670 (4%)

Query  6    LSIDLETFSDVDLKKCGVYKYAESPDFEILLFGVSVNGGEVTVYDLASGDTVP-----EE  60
            ++ID+ET+S  D+ KCG YKY+E+ DFEIL+++ S++GG ++  D++  D  P     E 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  61   IIKAFSDDSVIKWAYNASFERVCLSVWLRRNYPQYFSSYSIEEDTVRNYLDPSSWRCSLV  120
            +  A+ D +V K A+NA+FER CL+  + ++ P                  P  W C++V
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMP------------------PEEWICTMV  102

Query  121  WGAYTGLPLSLEGIGKVLKLENQKMAEGKALIRYFCVPCKPTKANGGRTRNLPEHDPVKW  180
             +   GLP SL+ +G VL+L+NQK   GK LIRYF +PCKPTK NGGRTRNLPEHD  KW
Sbjct  103  NSMRIGLPASLDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKW  162

Query  181  STFIAYNKRDVETEMAIQQKLSKFPVPDFLWEEY-HLDQEINDRGIQLDMMLVEQAIAID  239
              FI Y  RDVE EM+I +K+  FPV  +  + Y  +DQ+INDRGI+L   L+  A  +D
Sbjct  163  QQFIDYCIRDVEVEMTIAHKIKDFPVTAIE-QAYWVFDQHINDRGIKLSKSLMLGANVLD  221

Query  240  DRSREELSAKMRQLTALENPNSVQQMKEWLTK-HGLEVDSLDKKAVKELLKTAPPELAEV  298
             +S+EEL  + +++T+LENPNS  Q+  WL   +GL++ +L+KK+V+E LK A      +
Sbjct  222  KQSKEELLNQAKHITGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKM  281

Query  299  LELRRQLAKSSVKKYQAMQNAVCADGRARGMFQFYGANRSGRWAGRLIQLQNLPQNHM--  356
            LE+R Q++K+SVKKY+ M++ +C+D R RG+FQFYGA  +GRWAGR +QLQNL ++ +  
Sbjct  282  LEIRLQMSKTSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISD  340

Query  357  THLEDARSLVRSGDYALLSALYDSMP-EVLSELIRTAFVPKDGYKFIVSDFSAIEARVLS  415
            T+LE AR L++   +  L  L +  P ++LS+L+RT+F + +G  + VSDFSAIEARV++
Sbjct  341  TELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIA  400

Query  416  FLAGESWRLKVFAENGDIYCASASAMFHVPVEKHGQNAHLRQKGKIAELALGYGGSVGAL  475
              A E WRL VF  +G IY ASAS MF+VPVE   +   LRQKGK++ELALGY G+ GAL
Sbjct  401  WYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGAL  460

Query  476  KSMGALEMGLSEEELQPLVDAWRTSNPNIVQLWWDVDNAVKTTVRQRLDTETHGIRFRYR  535
            K+MGALEMG+ E+ELQ LVD+WR +NPNIV++W   ++A   TV+ R   +THG+RF  +
Sbjct  461  KAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMK  520

Query  536  SGMLFILLPSGRQLCYVKPKMGTNKFGGDSVTYEGVGSTKKWERIESYGPKFTENVVQAI  595
             G L I LPSGR L Y K+ +G N  G++ V + G++  +KW ++ +YG K+ EN+VQA 
Sbjct  521  KGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQAT  580

Query  596  SRDILMYAMRTLSHC-F-IVGHVHDELIIECSMDV-SLDAVCEQMGRTPPWIEGLNLRAD  652
            +RD+L  ++  L    F IVGHVHDE+I+E + +  +L  +   M +   W  GLNL +D
Sbjct  581  ARDLLAISIARLEASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSD  640

Query  653  GYETMFYKKD  662
            G+ + FY KD
Sbjct  641  GFTSPFYMKD  650

75) ES1_04960 in NC_021043


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  502 bits (1893),  Expect = 3e-143, Method: Compositional matrix adjust.
 Identities = 323/670 (49%), Positives = 449/670 (68%), Gaps = 33/670 (4%)

Query  4    LSIDIETYSSVDLAKCGVYKYTEATDFDILLFGYSTDGGPVQVVDLACGETIP-----QE  58
            ++IDIETYSS D++KCG YKYTEA DF+IL+++YS DGG++  +D++  +  P     + 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  59   VIAALTNDNVTKWAFNAQFERICLSRWLRDHGGFDNACYSIPEDTVGNYLDPASWKCTMI  118
               AL +  V K AFNA+FER CL++ +  +                  + P  W CTM+
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQ------------------MPPEEWICTMV  102

Query  119  WSAYMGLPLSLEGVGAVLGLGKQKLTEGKELIKYFCQPCAPTKANSGRTRNLPENAPDKW  178
             S  +GLP SL+ VG VL L +QK   GK+LI+YF  PC PTK N+GRTRNLPE+  +KW
Sbjct  103  NSMRIGLPASLDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKW  162

Query  179  ASFKRYNARDVEVEMSIQEKLAKFPVPDVVWEQY-HLDQEINDRGVALDMDLVRQAIDMD  237
              F  Y  RDVEVEM+I +K+  FPV  +  + Y  +DQ+INDRG+ L   L+  A  +D
Sbjct  163  QQFIDYCIRDVEVEMTIAHKIKDFPVTAIE-QAYWVFDQHINDRGIKLSKSLMLGANVLD  221

Query  238  TRSRAELTAAMKKLTALDNPNSVQQMKQWLSDN-GLNVDSLGKKEVAEMLKTAPAElqqv  296
             +S+ EL    K +T+L+NPNS  Q+  WL D+ GL++ +L KK V E LK A +  +++
Sbjct  222  KQSKEELLNQAKHITGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKM  281

Query  297  lllrqqlAKSSVKKYQAMEKAVCADGRARGMFQFYGANRTGRWAGRIIQMQNLPQNHLPD  356
            L +R Q++K+SVKKY+ M+  +C+D R RG+FQFYGA  TGRWAGR +Q+QNL ++ ++D
Sbjct  282  LEIRLQMSKTSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISD  340

Query  357  --LAEARALVRCGDFDGVELLYEDVP-DTLSQLIRTAFVPRPGYKFIVSDFSAIEARVLA  413
              L  AR L++   FD+++LL +  P D LSQL+RT+F +  G  + VSDFSAIEARV+A
Sbjct  341  TELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIA  400

Query  414  WFAGETWRQEVFEKGGDIYCASASQMFKVPVEKHGVNGHLRQKGKIAELALGYGGSVGAL  473
            W+A E WR +VF+  G IY ASASQMF+VPVE     + LRQKGK++ELALGY G+ GAL
Sbjct  401  WYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGAL  460

Query  474  KAMGALEMGLSEGELQPLVTAWRNSNQNIVKFWWDIDRAAMNAVKYHMDSEICGIKFSYK  533
            KAMGALEMG+ E ELQ LV +WRN+N NIV+FW   + AA+N+VK +   +  G++F  K
Sbjct  461  KAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMK  520

Query  534  SGMLFITLPSGRRLSYVKPKLGTNQFGGECITYEGIGGTKKWERLDTYGPKLVENIVQAT  593
             G L I LPSGR L+Y K+ +G N  G++ + + G++  +KW +L TYG KLVENIVQAT
Sbjct  521  KGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQAT  580

Query  594  SRDILCYAMRTLSHC-F-ITMHIHDELVIEASLGVN-LKSICEQMGRTPTWANGLKLRAD  650
            +RD+L  ++  L    F I  H+HDE+++E + G N LK I   M +   WA+GL+L +D
Sbjct  581  ARDLLAISIARLEASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSD  640

Query  651  GYETMFYKKD  660
            G+ + FY KD
Sbjct  641  GFTSPFYMKD  650

76) SeseC_00880 in NC_017582


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  498 bits (1879),  Expect = 4e-142, Method: Compositional matrix adjust.
 Identities = 312/661 (48%), Positives = 457/661 (70%), Gaps = 26/661 (3%)

Query  11   LSIDLETYCEVDLRKSGVYRYAEDDSFEILLLAVSVDNEPVTVYDLTKEELP------DE  64
            ++ID+ETY   D+ K G Y+Y+E + FEIL++A S+D  +++  D+TK +        + 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  65   ILQALVDDTIIKWAFNASFERICLSNWLKKHHPELLSEGFLSPNSWRCSMVWSAYLGLPL  124
            +  AL D ++ K AFNA+FER CL++ ++K+         ++P+ W C+MV S  +GLP 
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQ---------MPPEEWICTMVNSMRIGLPA  111

Query  125  SLEGVGTVLKLKNQKLKEGGDLIRYFCLPCKPTKVNGGRTRNFPNHAPDKWSAFIDYNKR  184
            SL+ VG VL+L+NQK K G +LIRYF +PCKPTKVNGGRTRN+P+H  +KW  FIDY  R
Sbjct  112  SLDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIR  171

Query  185  DVEVELAIKEKLRNYPVPVFVWEEY-HQDQIINDRGIGIDVDFVKGAITIDEESKAKIQE  243
            DVEVE++I +K++++PV  +  + Y   DQ INDRGI +   ++ GA  +D +SK  + +
Sbjct  172  DVEVEMTIAHKIKDFPVTAIE-QAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLN  230

Query  244  ELRELTELDNSNSVLQMIGWLRE-HGVTTDSLDKKAVKELLKTVDEKTAKVLKLRQQAAK  302
            + +++T L+N+NS  Q+++WL++ +G+   +L+KK+V+E LK    K+ K+L +R Q +K
Sbjct  231  QAKHITGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSK  290

Query  303  SSVSKYQAMMNCVCKDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPD--LEEAREL  360
            +SV KY+ M + +C D R RG+FQFYGA  TGRWAGR VQLQNL ++ ++D  LE AR+L
Sbjct  291  TSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDL  349

Query  361  FKTGDLEATELFYD--TQDTLSQLIRTAFIPSKGKKFIVCDFSAIEARVLSHLAGETWRS  418
            +K   ++  +L+ +   QD LSQL+RT+F +  G+ + V DFSAIEARV++  A E WR 
Sbjct  350  IKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRL  409

Query  419  KVFEQGKDIYCMSASQMFGVPVEKHGQNADLRQKGKIAELACGYGGAVGALKAMGAIDMG  478
             VF+    IY  SASQMF VPVE   +   LRQKGK++ELA GY G+ GALKAMGA++MG
Sbjct  410  DVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMG  469

Query  479  LGEKELQPLVDSWRQANPNIVLFWWDVDRAVKTAVKEQVQTETHGIQFEVRKGMLFITLP  538
            + E+ELQ LVDSWR+ANPNIV FW   + A   +VK +   +THG++F ++KG L I LP
Sbjct  470  IEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELP  529

Query  539  SGRKLVYVKPKMGKNQFGGESVTYEGTGTAKHWERLESYGPKFVENIVQAISRDILAYSM  598
            SGR L Y K+ +G N  G++ V + G +  + W +L +YG K+VENIVQA +RD+LA S+
Sbjct  530  SGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISI  589

Query  599  KQLQE--FKIVGHVHDEVIIECDQD-QSLEEISSLMGIAPNWMSDINLRADGYECSFYQK  655
             +L+   FKIVGHVHDEVI+E  ++ ++L EI ++M  + +W  ++NL +DG+  +FY K
Sbjct  590  ARLEASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK  649

Query  656  D  656
            D
Sbjct  650  D  650

77) SSUJS14_0643 in NC_017618


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  497 bits (1875),  Expect = 8e-142, Method: Compositional matrix adjust.
 Identities = 314/661 (48%), Positives = 458/661 (70%), Gaps = 26/661 (3%)

Query  6    LSIDIETYCEIDLRKSGVYRYAEDDSFEILLFAVSVNNGPVTVYDLSK-EKLP-----QD  59
            ++IDIETY   D+ K G Y+Y+E + FEIL++A S++ G+++  D++K ++ P     + 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  60   ILEALVDDRVIKWAFNASFERVCLSNWLKKYHPDLLLDRFLSPVSWRCSMIWSAYLGLPL  119
            +  AL D  V K AFNA+FER CL+   K ++ ++      +P  W C+M+ S  +GLP 
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLA---KHFNKQM------PPEEWICTMVNSMRIGLPA  111

Query  120  SLEGVGTVLKLKDQKMREGADLIRYFCVPCKPTKINGGRTRNLPHHAPDQWATFIDYNRR  179
            SL+ VG VL+L++QK + G +LIRYF +PCKPTK+NGGRTRNLP+H  ++W  FIDY  R
Sbjct  112  SLDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIR  171

Query  180  DVEVELAIKERLKNFPVPDFVWDEY-LQDQIINDRGIGIDVDFVKAAIKIDTESKAQIQE  238
            DVEVE++I +++K+FPV  +  + Y + DQ INDRGI +   ++ +A  +D +SK ++ +
Sbjct  172  DVEVEMTIAHKIKDFPVTAIE-QAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLN  230

Query  239  ELKALTSLENPNSVLQMIGWLRE-HGVTTDSLDKKAVKELLKTVDDKTSKVLKLRQQAAK  297
            + K +T+LENPNS  Q+++WL++ +G+   +L+KK+V+E LK   +K+ K+L +R Q +K
Sbjct  231  QAKHITGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSK  290

Query  298  SSVSKYQAMMNCVCKDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPD--LEEARKL  355
            +SV KY+ M + +C D R RG+FQFYGA  TGRWAGR VQLQNL ++ ++D  LE AR L
Sbjct  291  TSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDL  349

Query  356  FKTGDLEATELLYD--TQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGEKWRS  413
            +K   ++  +LL +   QD LSQL+RT+F +  G+ + V DFSAIEARV++  A E+WR 
Sbjct  350  IKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRL  409

Query  414  KVFELGKDIYCMSASQMFGVPVEKHGQNSKLRQKGKIAELACGYGGSVGALKAMGALDMG  473
             VF+    IY  SASQMF VPVE   +   LRQKGK++ELA GY G+ GALKAMGAL+MG
Sbjct  410  DVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMG  469

Query  474  LSEEELQPLVNSWRQANPNIVLLWWDVDNAVKTAVKEQIPTSTHGIQFEVRSGILFITLP  533
            + E+ELQ LV+SWR+ANPNIV +W   ++A   +VK +    THG++F ++ G+L I LP
Sbjct  470  IEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELP  529

Query  534  SGRKLAYIKPRIGENQFGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAYSL  593
            SGR LAY K+ +GEN  G++ V + G +  ++W +L +YG K+VENIVQA +RD+LA S+
Sbjct  530  SGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISI  589

Query  594  KQL--KEFKIVGHVHDEVIIECPMEQK-IDKIASLMGIAPDWMSDINLRADGYECLFYQK  650
             +L    FKIVGHVHDEVI+E P   + +  I ++M  + DW  ++NL +DG+   FY K
Sbjct  590  ARLEASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK  649

Query  651  D  651
            D
Sbjct  650  D  650

78) NJAUSS_0627 in NC_020526


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  497 bits (1875),  Expect = 8e-142, Method: Compositional matrix adjust.
 Identities = 314/661 (48%), Positives = 458/661 (70%), Gaps = 26/661 (3%)

Query  6    LSIDIETYCEIDLRKSGVYRYAEDDSFEILLFAVSVNNGPVTVYDLSK-EKLP-----QD  59
            ++IDIETY   D+ K G Y+Y+E + FEIL++A S++ G+++  D++K ++ P     + 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  60   ILEALVDDRVIKWAFNASFERVCLSNWLKKYHPDLLLDRFLSPVSWRCSMIWSAYLGLPL  119
            +  AL D  V K AFNA+FER CL+   K ++ ++      +P  W C+M+ S  +GLP 
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLA---KHFNKQM------PPEEWICTMVNSMRIGLPA  111

Query  120  SLEGVGTVLKLKDQKMREGADLIRYFCVPCKPTKINGGRTRNLPHHAPDQWATFIDYNRR  179
            SL+ VG VL+L++QK + G +LIRYF +PCKPTK+NGGRTRNLP+H  ++W  FIDY  R
Sbjct  112  SLDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIR  171

Query  180  DVEVELAIKERLKNFPVPDFVWDEY-LQDQIINDRGIGIDVDFVKAAIKIDTESKAQIQE  238
            DVEVE++I +++K+FPV  +  + Y + DQ INDRGI +   ++ +A  +D +SK ++ +
Sbjct  172  DVEVEMTIAHKIKDFPVTAIE-QAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLN  230

Query  239  ELKALTSLENPNSVLQMIGWLRE-HGVTTDSLDKKAVKELLKTVDDKTSKVLKLRQQAAK  297
            + K +T+LENPNS  Q+++WL++ +G+   +L+KK+V+E LK   +K+ K+L +R Q +K
Sbjct  231  QAKHITGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSK  290

Query  298  SSVSKYQAMMNCVCKDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPD--LEEARKL  355
            +SV KY+ M + +C D R RG+FQFYGA  TGRWAGR VQLQNL ++ ++D  LE AR L
Sbjct  291  TSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDL  349

Query  356  FKTGDLEATELLYD--TQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGEKWRS  413
            +K   ++  +LL +   QD LSQL+RT+F +  G+ + V DFSAIEARV++  A E+WR 
Sbjct  350  IKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRL  409

Query  414  KVFELGKDIYCMSASQMFGVPVEKHGQNSKLRQKGKIAELACGYGGSVGALKAMGALDMG  473
             VF+    IY  SASQMF VPVE   +   LRQKGK++ELA GY G+ GALKAMGAL+MG
Sbjct  410  DVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMG  469

Query  474  LSEEELQPLVNSWRQANPNIVLLWWDVDNAVKTAVKEQIPTSTHGIQFEVRSGILFITLP  533
            + E+ELQ LV+SWR+ANPNIV +W   ++A   +VK +    THG++F ++ G+L I LP
Sbjct  470  IEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELP  529

Query  534  SGRKLAYIKPRIGENQFGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAYSL  593
            SGR LAY K+ +GEN  G++ V + G +  ++W +L +YG K+VENIVQA +RD+LA S+
Sbjct  530  SGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISI  589

Query  594  KQL--KEFKIVGHVHDEVIIECPMEQK-IDKIASLMGIAPDWMSDINLRADGYECLFYQK  650
             +L    FKIVGHVHDEVI+E P   + +  I ++M  + DW  ++NL +DG+   FY K
Sbjct  590  ARLEASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK  649

Query  651  D  651
            D
Sbjct  650  D  650

79) Ccel_2856 in NC_011898


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  496 bits (1871),  Expect = 2e-141, Method: Compositional matrix adjust.
 Identities = 321/656 (49%), Positives = 448/656 (69%), Gaps = 21/656 (3%)

Query  7    LSLDLETYSSVNLQKSGVYRYAESDDFEILLFGYSVDSGEVQVVDLAGGEEIP-----DE  61
            +++D+ETYSS ++ K G Y+Y+E++DFEIL+++YS+D+G +  +D++  ++ P     + 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  62   IINALMDDSVTKWAFNAMFERVCLSKWLNLTEYLDPASWKCSMVWSAYMGLPLSLEGVGA  121
            +  AL D +V K AFNA FER CL+K  ++   + P  W C+MV S  +GLP SL+ VG 
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAK--HFNKQMPPEEWICTMVNSMRIGLPASLDKVGE  118

Query  122  VLGLEKQKLTEGKDLIKYFCTPCSPTKSNGGRVRNLPEHDMDKWERFKVYNIRDVESEML  181
            VL L++QK   GK+LI+YF  PC PTK NGGR RNLPEHD++KW++F  Y IRDVE EM 
Sbjct  119  VLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMT  178

Query  182  IQQRLSKFQVP---ENIWKEYHLDQVINDRGIAIDMTFVKQAVEMDEHSREKLIALMQDI  238
            I +++  F V    +  W    +DQ INDRGI +  +++  A  +D +S+E L+   ++I
Sbjct  179  IAHKIKDFPVTAIEQAYW---VFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI  235

Query  239  TNLENPNSVQQMKDWL-ADNGLETDSLGKKVVAEMLKTAPEPLGTVLELRQQLAKSSVKK  297
            T LENPNS  Q+  WL  D+GL+  +L KK V E LK A      +LE+R Q++K+SVKK
Sbjct  236  TGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKK  295

Query  298  YTAMENAVCSDGRARGMFQFYGANRTGRFSGRLIQLQNLPQNHMPD--LEQARALVRSGN  355
            Y  M++ +CSD R RG+FQFYGA  TGR +GR +QLQNL ++ ++D  LE AR L++   
Sbjct  296  YNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQR  354

Query  356  FDALTLLYDSIP-EVLSELIRTAFIPREGMKFIVADFSAIEARVIAWLAGEKWRLNVFQK  414
            FD L LL +  P ++LS+L+RT+F + EG  + V+DFSAIEARVIAW A E+WRL+VF+ 
Sbjct  355  FDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNT  414

Query  415  GGDIYCASASQMFNVPVEKHGVNGHLRQKGKIaelalgyggavgalKSMGALEMGIEEEE  474
             G IY ASASQMFNVPVE     + LRQKGK++ELALGY G+ GALK+MGALEMGIEE+E
Sbjct  415  HGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENE  474

Query  475  LQPLVTAWRQSNPNITKLWWDVDRAVKTCVKQKTPTATHGIKFIYQSGMLFIVLPSGRRL  534
            LQ LV +WR++NPNI ++W   + A    VK +    THG++F  + G L I LPSGR L
Sbjct  475  LQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRAL  534

Query  535  AYVKPRMGENMFGSESVTYEGVGGTKKWERIESYGPKFVENIVQAISRDILCHAMQTLKN  594
            AY K+ +GEN  GS+ V + G++  +KW ++ +YG K+VENIVQA +RD+L  ++  L  
Sbjct  535  AYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEA  594

Query  595  CS--IVAHVHDEIIIEADMGM-SLSAICEQMAKTPTWANGLLLSADGYECQFYQKD  647
             +  IV+HVHDE+I+E   G  +L  I   M K   WA+GL L++DG+   FY KD
Sbjct  595  SGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

80) SFBM_0104 in NC_015913


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  495 bits (1865),  Expect = 5e-141, Method: Compositional matrix adjust.
 Identities = 314/653 (49%), Positives = 457/653 (70%), Gaps = 20/653 (3%)

Query  4    LAIDIETYSDIDIKKAGVYAYAGSTAFTILLFAYRYDDEEVKLIDLTETKTLP-----QS  58
            + IDIETYS  DI K G Y Y+ +  F IL++AY  D+  +  ID+T     P     ++
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  59   IIDDLINPNIIKTAYNANFERVCLSKFLNIKLPIDDWRCTAVQASMLGLPNNLKDVAKVL  118
            +   L++P + K A+NANFER CL+K +N ++P ++W CT V++  +GLP +L  V+ VL
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  119  NLESQKDSKGTRLINYFSVPYKGQ-------RRMPSEDIIKWEEFKSYCIQDVKVESAIR  171
             L++QKD  G  LI YFS+P K         R +P +D+ KW++F  YCI+DV VE +I 
Sbjct  121  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  180

Query  172  DRLSKYPISDSEQELYIIDQIINDRGIKVDEVFVDNAIRFDAIHTDICKQAFNELTGGVN  231
            +++  +P++  EQ   ++DQ INDRGIK+   ++  A  +D    +   +  +++TG  N
Sbjct  181  HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN  240

Query  232  PKSSTQIKEYLIN-RGLKVSNVdkstiadiikdtddkGLKQILDLKLKLGKTSVKKYEAM  290
            P+S+TQ+   L + +GL ++N++K T+ + +K++ +K+ K++L+++L+++KTSVKKY+ M
Sbjct  241  PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKA-KKMLEIRLQMSKTSVKKYNKM  299

Query  291  KRCTCSDGRIRGLLQFYGANRTGRWAGRLVQVHNLPQNHLDN--LEDVRGLIVNGDYDLL  348
                CSD R+RGL+QFYGA  TGRWAGR VQ++NL ++ + +  LE  R+LI +  +D L
Sbjct  300  HDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDL  358

Query  349  EMLYDNIP-DVLSQLIRTAFIPSEGKKFIVCDFSAIEARVIAYLADEKWRIDVFNTHGKI  407
            ++L +  P D+LSQL+RT+F + EG+ + V DFSAIEARVIA  A E+WR+DVFNTHGKI
Sbjct  359  DLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKI  418

Query  408  YEASAAQMFKVPIESITKSSPLRQKGKIAELALGYGGSVGALKQMGATNMGLDEDELQGL  467
            YEASA+QMF+VP+ESITK+ PLRQKGK++ELALGY G+ GALK MGA +MG++E+ELQGL
Sbjct  419  YEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGL  478

Query  468  VDSWRLANPNITRFWKTVEKSAINAVKGIASIIDKGIKFKREDGILFITLPSGRRLAYVK  527
            VDSWR ANPNI  FWK+ + +AIN+VK+  +    G++F    G+L I LPSGR LAY K
Sbjct  479  VDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPK  538

Query  528  PRIVLNSFGSESIAYNGVNGTTKVWEEIETYGGKLVENIVQAVARDCLAESIKRLHKRGY  587
            + +  NS GS+ + + G++   K W  + TYGGKLVENIVQA ARD LA SI RL+  G+
Sbjct  539  ASVGENSWGSQVVEFMGLDLNRK-WSKLKTYGGKLVENIVQATARDLLAISIARLEASGF  597

Query  588  RIIFHVHDEVILESDKDIK-VEDIESIMAEPIKWAEGLNLSAAGFEADFYKKD  639
            +I+ HVHDEVI+E  ++ + + +IE+IM  P+ WA GLNL++ GF + FY KD
Sbjct  598  KIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

81) polA in NC_010337


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  490 bits (1849),  Expect = 1e-139, Method: Compositional matrix adjust.
 Identities = 319/658 (49%), Positives = 445/658 (68%), Gaps = 23/658 (3%)

Query  4    LNIDIETYSSVDLAKSGVYRYTESPDFAILLFGYSVDGGEVQVVDLMCSEAIP-----SK  58
            +NIDIETYSS D++K G Y+YTE+ DF IL+++YS+DGG +  +D+   +  P       
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  59   VVDALTDKDVTKWAFNAQFERICLSKWLGLPTGQYLDPMSWRCTMVWSAYMGLPLSLEGT  118
               AL D  V K AFNA+FER CL+K +       + P  W CTMV S  +GLP SL+  
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQ----MPPEEWICTMVNSMRIGLPASLDKV  116

Query  119  GAVLGLEKQKLTEGKDLIRHFSVPCKPTVSNEGRTRNLPIHAPDKWAAFKAYNLRDVETE  178
            G VL L++QK   GK+LIR FS+PCKPT  N GRTRNLP H  +KW  F  Y +RDVE E
Sbjct  117  GEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVE  176

Query  179  MAIQQKLAKFPVP---EGVWGEYHLDQEINDRGVALDMDLVRQAIEMDNRSRSKLTGMIR  235
            M+I +K+  FPV    ++ W    +DQ+INDRG+ L   L+  A  +D++S+  L    +
Sbjct  177  MTIAHKIKDFPVTAIEQAYWV---FDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAK  233

Query  236  ELTELENPNSVVQMKQWL-SDHGLETDTLGKKAVVELLKTASEPLGKVLELRQSLAKSSV  294
            ++T LENPNS  Q+  WL  D+GL+   L KK+V E LK A+    K+LE+R  ++K+SV
Sbjct  234  HITGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSV  293

Query  295  KKYTAMENVVCTDGRARGMFQFYGANRTGRWAGRLIQLQNLPQNHMPD--LEQARSLVRS  352
            KKY  M++++C+D R RG+FQFYGA  TGRWAGR +QLQNL ++ ++D  LE AR L++ 
Sbjct  294  KKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKE  352

Query  353  GNFAALEMLYDSVP-EVLSELIRTAFVPKKGCKFIVADFSAIEARVIAWLAGEKWRQEVF  411
              F  L++L +  P ++LS+L+RT+F +  G  + V+DFSAIEARVIAW A E+WR +VF
Sbjct  353  QRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVF  412

Query  412  ESGGDIYCASASQMFHVPVEKNGVNGHLRQKGKIAELALGYGGSVGALKamgalemglee  471
            ++ G IY ASASQMF+VPVE     + LRQKGK++ELALGY G+ GALKAMGALEMG+EE
Sbjct  413  NTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEE  472

Query  472  eelQPLVSAWRSSNPKIVRLWWDIDRAAMKAVRERTTTETHGIRFSYQSGMFFITLPSGR  531
            +ELQ LV +WR++NP+IV +W   + AA+++V+ R T +THG+RF  + G + I LPSGR
Sbjct  473  NELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGR  532

Query  532  RLAYVKPRIGQNRFGSDCITYEGVGGAKKWERIESYGPKLTENIVQATSRDILCYAMRNL  591
             LAY K+ +G+N  GS+ + + G++  +KW ++ +YG KL ENIVQAT+RD+L  ++  L
Sbjct  533  ALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARL  592

Query  592  RHCS--IVMHVHDEIVIEADR-RMSTEAVCKQMGQTPPWAKGLLLRADGYETDFYKKD  646
               +  IV HVHDE+++E  R   +   +   M +   WAKGL L +DG+ + FY KD
Sbjct  593  EASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

82) HMPREF9231_0480 in NC_017456


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  490 bits (1849),  Expect = 9e-140, Method: Compositional matrix adjust.
 Identities = 309/669 (47%), Positives = 446/669 (67%), Gaps = 33/669 (4%)

Query  4    LSVDLETFSSVNLGKCGVYKYAESDDFEILLFGYSVDGSEVQVVDLAQGETIP-----EV  58
            +++D+ET+SS +++KCG YKY+E++DFEIL+++YS+DG+ +  +D+++ +  P     E 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  59   VLSALTDETVTKWAFNAQFERVCLSRYLRDKGINVNPGQTGKSEGLFLNPCSWHCTMIWS  118
               AL D +V K AFNA+FER CL++ +  +                + P  W CTM+ S
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQ----------------MPPEEWICTMVNS  104

Query  119  ATLGLPMSLESVGTVLGLDKQKLTSGKSLIKYFCLPCNPTKVNGGRTRNKYFHDKEKWEQ  178
              +GLP SL+ VG VL L++QK  +GK+LI+YF +PC+PTKVNGGRTRN   HD EKW+Q
Sbjct  105  MRIGLPASLDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQ  164

Query  179  FKSYNKRDVEVEMSIQEKLSRFPVPDFLWQEFY--LDQEINDRGIGIDSLFVESAIKLDQ  236
            F  Y  RDVEVEM+I +K+  FPV  +  ++ Y  +DQ+INDRGI +   ++ +A  LD+
Sbjct  165  FIDYCIRDVEVEMTIAHKIKDFPVTAI--EQAYWVFDQHINDRGIKLSKSLMLGANVLDK  222

Query  237  EVKTHLVDELKHVTGLENPNSVLQMRSWLKK-HGLEMESLGKKEVAKELKTVGKELAEVL  295
            + K +L+++ KH+TGLENPNS  Q+ +WLK  +GL++ +L KK V   LK        +L
Sbjct  223  QSKEELLNQAKHITGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKML  282

Query  296  RLRQQLAKSSVKKYTAMKNAACMDYRERGMFRFYGANRTGRFAGRLVQLQNLPQNHLPD-  354
             +R Q++K+SVKKY  M +  C D R RG+F+FYGA  TGR AGR VQLQNL ++ ++D 
Sbjct  283  EIRLQMSKTSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDT  341

Query  355  -LAEARSLVKQGNVEALEMLYEDIP-DTLSQLIRTAFIPRTGLKFIVADFSAIEARVLAW  412
             L  AR L+K+   + L++L +  P D LSQL+RT+F +  G  + V+DFSAIEARV+AW
Sbjct  342  ELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAW  401

Query  413  LAGEKWRMRVFAEGKDIYCSSASQMFSVPVEKHGVNGHLRQKGKIAELALGYGGSVGALK  472
             A E+WR+ VF     IY +SASQMF+VPVE     + LRQKGK++ELALGY G+ GALK
Sbjct  402  YAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALK  461

Query  473  AMGALDMGVREDELQPLVDAWRSSNPMVTTLWWDVDRAVKQCVHERISVRTHNIVFTYKS  532
            AMGAL+MG+ E+ELQ LVD+WR++NP +  +W   + A  + V  R + +TH + F  K 
Sbjct  462  AMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKK  521

Query  533  GFLIIKLPSKRCLYYVKPRVEENKYGGESVTYEGVGSTKKWERLESYGPKFVENITQAIA  592
            GFL+I LPS R L Y K+ V EN  G++ V + G++  +KW +L +YG K+VENI QA A
Sbjct  522  GFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATA  581

Query  593  RDILLYAMQTLKE--YRIVAHVHDEAIIETDKNV-SVQSVCELMGRTPPWAEGLVLRADG  649
            RD+L  ++  L    ++IV+HVHDE I+E  +   +++ +  +M +   WA GL L +DG
Sbjct  582  RDLLAISIARLEASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDG  641

Query  650  YECEFYKKD  658
            +   FY KD
Sbjct  642  FTSPFYMKD  650

83) L in NC_019042


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  489 bits (1845),  Expect = 2e-139, Method: Compositional matrix adjust.
 Identities = 306/661 (47%), Positives = 457/661 (70%), Gaps = 26/661 (3%)

Query  6    ISIDIETYCAIDLRKSGVYRYAEDDSFELLLFAVSVGNGPVAIYDLSK-EKLP-----QD  59
            ++IDIETY + D+ K G Y+Y+E + FE+L++A S++ G+++  D++K ++ P     + 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  60   ILEALVDDRVIKWAFNASFERICLSNWLKKYHPDLLLDGFLSPVSWRCSMIWSAYLGLPL  119
            +  AL D  V K AFNA+FER CL+   K ++ ++      +P  W C+M+ S  +GLP 
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLA---KHFNKQM------PPEEWICTMVNSMRIGLPA  111

Query  120  SLEGVGAVLKLKDQKMREGADLIRYFCLPCKQTKINGGRTSNLPHHAPDKWSTFIDYNRR  179
            SL+ VG VL+L++QK + G +LIRYF +PCK TK+NGGRT NLP+H  +KW  FIDY  R
Sbjct  112  SLDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIR  171

Query  180  DVEVELAIKERLKNFPVPDFVWDEY-LQDQIINDRGIGIDLDFVNAAIKIDSESKAKIQE  238
            DVEVE++I +++K+FPV  +  + Y + DQ INDRGI +   ++ +A  +D +SK  + +
Sbjct  172  DVEVEMTIAHKIKDFPVTAIE-QAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLN  230

Query  239  ELKALTGLENPNSVLQMIGWLRE-HGVSTDSLDKKAVKELLKTVDKTTAQVLKLRQQAAK  297
            + K +TGLENPNS  Q+++WL++ +G+   +L+KK+V+E LK     + ++L +R Q +K
Sbjct  231  QAKHITGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSK  290

Query  298  SSVSKYHAMMNCVCKDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPD--LEEAREL  355
            +SV KY+ M + +C D R RG+FQFYGA  TGRWAGR VQLQNL ++ ++D  LE AR+L
Sbjct  291  TSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDL  349

Query  356  FRKGDLEATELLYD--TQDTLSQLIRTAFVPSEGKKFIVCDFSAIEARVLSHLAGERWRS  413
            ++   ++  +LL +   QD LSQL+RT+F + EG+ + V DFSAIEARV++  A E+WR 
Sbjct  350  IKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRL  409

Query  414  KVFEQGKDIYCMSASHMFGVPVEKHGQNSELRQKGKIAELACGYGGSVGALKAMGAIDMG  473
             VF+    IY  SAS+MF VPVE   +   LRQKGK++ELA GY G+ GALKAMGA++MG
Sbjct  410  DVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMG  469

Query  474  LSEEELQPLVNSWRQANPNIVLLWWDVDNAVKTAVKKQIPTSIHDIQFEVKSGILFISLP  533
            + E+ELQ LV+SWR+ANPNIV +W   ++A   +VK +     H+++F +K G+L I LP
Sbjct  470  IEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELP  529

Query  534  SGRKLSYIKPKIGENQFGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFAL  593
            SGR L+Y K+ +GEN  G++ V + G +  ++W +L +YG K+VENIVQA +RD+LA+++
Sbjct  530  SGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISI  589

Query  594  KQL--KEFKIVGHVHDEVIIECPMEQK-LDDIASLMGIAPNWMSDINLRADGYECFFYQK  650
             +L    FKIVGHVHDEVI+E P   + L +I ++M  + +W  ++NL +DG+   FY K
Sbjct  590  ARLEASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK  649

Query  651  D  651
            D
Sbjct  650  D  650

84) MOUSESFB_0097 in NC_017294


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  487 bits (1836),  Expect = 1e-138, Method: Compositional matrix adjust.
 Identities = 311/653 (48%), Positives = 454/653 (70%), Gaps = 20/653 (3%)

Query  4    LAIDIETYSDIDIKKAGVYAYAGSTAFTILLFAYRYDDEEVKLIDLTETKTLP-----QS  58
            + IDIETYS  DI K G Y Y+ +  F IL++AY  D+  +  ID+T     P     ++
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  59   IIDDLNNPNIIKTAYNANFERVCLSKFLNIKIPIDEWRCTAVQASMLGLPNNLKDVAKVL  118
            +   L +P + K A+NANFER CL+K +N ++P +EW CT V++  +GLP +L  V+ VL
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  119  NLESQKDSKGTRLINYFSVPYKGQ-------RRMPSEDSVKWEEFKSYCIQDVKVESAIR  171
             L++QKD  G  LI YFS+P K         R +P +D  KW++F  YCI+DV VE +I 
Sbjct  121  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  180

Query  172  DRLSKYPISDSEQELYIIDQIINDRGIKVDEVFVDNAIRFDAIHTDICKQAFNELTGGVN  231
            +++  +P++  EQ   ++DQ INDRGIK+   ++  A  +D    +   +  +++TG  N
Sbjct  181  HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITGLEN  240

Query  232  PKSSTQIKEYLIN-RGLKVSNVdkstiadiikdtddkGLKQILDLKLKLGKTSVKKYEAM  290
            P+S+TQ+   L + +GL ++N++K T+ + +K++ +K+ K++L+++L+++KTSVKKY+ M
Sbjct  241  PNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKA-KKMLEIRLQMSKTSVKKYNKM  299

Query  291  KRCTCSDGRIRGLLQFYGANRTGRWAGRLVQVHNLPQNHLDN--LEDVRGLIVNGDYDLV  348
                CSD R+RGL+QFYGA  TGRWAGR VQ++NL ++ + +  LE  R+LI +  +D +
Sbjct  300  HDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFDDL  358

Query  349  EMLYDNIP-DVLSQLIRTAFIPSEGKKFIVCDFSAIEARVIAYLADEKWRIEVFETHGKI  407
            ++L +  P D+LSQL+RT+F + EG+ + V DFSAIEARVIA  A E+WR++VF+THGKI
Sbjct  359  DLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHGKI  418

Query  408  YEASASQMFKVPLESINKSSPLRQKGKIAELALGYGGSVGALKQMGAINMGLEEEELQGL  467
            YEASASQMF+VP+ESI K+ PLRQKGK++ELALGY G+ GALK MGA++MG+EE+ELQGL
Sbjct  419  YEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGL  478

Query  468  VDSWRLANPNITRFWRTVEKSAINAVKGIASIIDKGIKFKREDGILFITLPSGRRLAYVK  527
            VDSWR ANPNI  FW++ + +AIN+VK+  +    G++F    G+L I LPSGR LAY K
Sbjct  479  VDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPK  538

Query  528  PRIVLNRFGSESIAYEGVNGTTKVWEEIETYGGKLVENIVQAVARDCLAESIKRLHKRGY  587
            + +  N  GS+ + + G++   K W  + TYGGKLVENIVQA ARD LA SI RL+  G+
Sbjct  539  ASVGENSWGSQVVEFMGLDLNRK-WSKLKTYGGKLVENIVQATARDLLAISIARLEASGF  597

Query  588  RIIFHVHDEVILESDKDIK-VEDIESIMAEPIKWAEGLNLSAAGFEADFYKKD  639
            +I+ HVHDEVI+E  ++ + + +IE+IM  P+ WA GLNL++ GF + FY KD
Sbjct  598  KIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

85) SAK_0725 in NC_007432


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  487 bits (1838),  Expect = 7e-139, Method: Compositional matrix adjust.
 Identities = 315/661 (48%), Positives = 463/661 (71%), Gaps = 26/661 (3%)

Query  6    LSIDLETYCEVDLRKSGVYSYAEDDSFEILLLAVSVDNGPVTVYDLTK-ENLP-----DQ  59
            ++ID+ETY   D+ K G Y Y+E + FEIL++A S+D G+++  D+TK +N P     + 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  60   ILQALVNDSIIKWAFNASFERICLSNWLKKHHPKLLSEGFLSPNSWRCSMVWSAYLGLPL  119
            +  AL + ++ K AFNA+FER CL++ ++K+         ++P+ W C+MV S  +GLP 
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQ---------MPPEEWICTMVNSMRIGLPA  111

Query  120  SLEGVGTVlklkeqklkeGGDVIRYFCLPCKPTKINGGRKRNFPHHAPDKWAAFINYNKR  179
            SL+ VG VL+L++QK K G ++IRYF +PCKPTK+NGGR RN+P+H  +KW  FI+Y  R
Sbjct  112  SLDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIR  171

Query  180  DVEVELAIKNKLRNHPVPDFLWEEY-HQDQNINDRGIGIDVDFVKAAITIDEESKSKIQE  238
            DVEVE++I +K+++ PV  +  + Y   DQ+INDRGI +   ++ +A  +D +SK  + +
Sbjct  172  DVEVEMTIAHKIKDFPVTAIE-QAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLN  230

Query  239  ELKELTGLENPNSVLQMIGWLRE-HGVTTNSLDKKAVKELLKVVDAKTTKVLKLRQQAAK  297
            + K++TGLENPNS  Q+++WL++ +G+   +L+KK+V+E LK   +K+ K+L +R Q +K
Sbjct  231  QAKHITGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSK  290

Query  298  SSVSKYQAMVNCVCLDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPD--LKEARDL  355
            +SV KY+ M + +C D R RG+FQFYGA  TGRWAGR VQLQNL ++ ++D  L  ARDL
Sbjct  291  TSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDL  349

Query  356  FKTGDLEATDLLYG--TQDTLSQLIRTAFVPSDGKKFIVCDFSAIEARVLSHLAGEKWRS  413
            +K   ++  DLL     QD LSQL+RT+F + +G+ + V DFSAIEARV++  A E+WR 
Sbjct  350  IKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRL  409

Query  414  MVFEQGKDIYCMSASQMFGVPVEKHGRNADLRQKGKIAELACGYGGAVGALKAMGAIDMG  473
             VF+    IY  SASQMF VPVE   +   LRQKGK++ELA GY G+ GALKAMGA++MG
Sbjct  410  DVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMG  469

Query  474  LDEQELQPLVDSWRQANPNIVLFWWDVDKAVKTAIKYQKQTETHGIQFKVRKGMLFITLP  533
            ++E+ELQ LVDSWR+ANPNIV FW   + A   ++K +K  +THG++F ++KG L I LP
Sbjct  470  IEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELP  529

Query  534  SGRKLAYVKPKMGENQFGGESVTYEGTGTAKRWERLESYGPKFVENIIQAISRDILAYSM  593
            SGR LAY K+ +GEN  G++ V + G +  ++W +L +YG K+VENI+QA +RD+LA S+
Sbjct  530  SGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISI  589

Query  594  KQL--KDFRIVGHVHDEIIIECDQ-SQNLEQIATLMGKAPYWMPDINLRADGYECLFYQK  650
             +L   +F+IVGHVHDE+I+E  + S+ L +I T+M K+  W  ++NL +DG+   FY K
Sbjct  590  ARLEASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK  649

Query  651  D  651
            D
Sbjct  650  D  650

86) dpo in NC_018646


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  487 bits (1838),  Expect = 7e-139, Method: Compositional matrix adjust.
 Identities = 315/661 (48%), Positives = 463/661 (71%), Gaps = 26/661 (3%)

Query  6    LSIDLETYCEVDLRKSGVYSYAEDDSFEILLLAVSVDNGPVTVYDLTK-ENLP-----DQ  59
            ++ID+ETY   D+ K G Y Y+E + FEIL++A S+D G+++  D+TK +N P     + 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  60   ILQALVNDSIIKWAFNASFERICLSNWLKKHHPKLLSEGFLSPNSWRCSMVWSAYLGLPL  119
            +  AL + ++ K AFNA+FER CL++ ++K+         ++P+ W C+MV S  +GLP 
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQ---------MPPEEWICTMVNSMRIGLPA  111

Query  120  SLEGVGTVlklkeqklkeGGDVIRYFCLPCKPTKINGGRKRNFPHHAPDKWAAFINYNKR  179
            SL+ VG VL+L++QK K G ++IRYF +PCKPTK+NGGR RN+P+H  +KW  FI+Y  R
Sbjct  112  SLDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIR  171

Query  180  DVEVELAIKNKLRNHPVPDFLWEEY-HQDQNINDRGIGIDVDFVKAAITIDEESKSKIQE  238
            DVEVE++I +K+++ PV  +  + Y   DQ+INDRGI +   ++ +A  +D +SK  + +
Sbjct  172  DVEVEMTIAHKIKDFPVTAIE-QAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLN  230

Query  239  ELKELTGLENPNSVLQMIGWLRE-HGVTTNSLDKKAVKELLKVVDAKTTKVLKLRQQAAK  297
            + K++TGLENPNS  Q+++WL++ +G+   +L+KK+V+E LK   +K+ K+L +R Q +K
Sbjct  231  QAKHITGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSK  290

Query  298  SSVSKYQAMVNCVCLDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPD--LKEARDL  355
            +SV KY+ M + +C D R RG+FQFYGA  TGRWAGR VQLQNL ++ ++D  L  ARDL
Sbjct  291  TSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDL  349

Query  356  FKTGDLEATDLLYG--TQDTLSQLIRTAFVPSDGKKFIVCDFSAIEARVLSHLAGEKWRS  413
            +K   ++  DLL     QD LSQL+RT+F + +G+ + V DFSAIEARV++  A E+WR 
Sbjct  350  IKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRL  409

Query  414  MVFEQGKDIYCMSASQMFGVPVEKHGRNADLRQKGKIAELACGYGGAVGALKAMGAIDMG  473
             VF+    IY  SASQMF VPVE   +   LRQKGK++ELA GY G+ GALKAMGA++MG
Sbjct  410  DVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMG  469

Query  474  LDEQELQPLVDSWRQANPNIVLFWWDVDKAVKTAIKYQKQTETHGIQFKVRKGMLFITLP  533
            ++E+ELQ LVDSWR+ANPNIV FW   + A   ++K +K  +THG++F ++KG L I LP
Sbjct  470  IEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELP  529

Query  534  SGRKLAYVKPKMGENQFGGESVTYEGTGTAKRWERLESYGPKFVENIIQAISRDILAYSM  593
            SGR LAY K+ +GEN  G++ V + G +  ++W +L +YG K+VENI+QA +RD+LA S+
Sbjct  530  SGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISI  589

Query  594  KQL--KDFRIVGHVHDEIIIECDQ-SQNLEQIATLMGKAPYWMPDINLRADGYECLFYQK  650
             +L   +F+IVGHVHDE+I+E  + S+ L +I T+M K+  W  ++NL +DG+   FY K
Sbjct  590  ARLEASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK  649

Query  651  D  651
            D
Sbjct  650  D  650

87) M6_Spy1155 in NC_006086


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  486 bits (1833),  Expect = 2e-138, Method: Compositional matrix adjust.
 Identities = 308/661 (47%), Positives = 453/661 (69%), Gaps = 26/661 (3%)

Query  6    LSIDIETYCEIDLRKSGVYRYAEDDSFELLLIAVSVDNGPVTVYDFNK-EKLP-----QD  59
            ++IDIETY   D+ K G Y+Y+E + FE+L+IA S+D G+++  D  K ++ P     + 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  60   ILEALVEDRVIKWAFNASFERICLSNWLKKHHPEFLSDGFLSPVSWRCSMIWSAYLGLPL  119
            +  AL +  V K AFNA+FER CL++ ++K+         ++P  W C+M+ S  +GLP 
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQ---------MPPEEWICTMVNSMRIGLPA  111

Query  120  SLEGVGTVLKLKDQKMREGADLIRYFCLPCKPTKVNGGRIRNFPHHAPNKWSTFIDYNRR  179
            SL+ VG VL+L++QK + G +LIRYF +PCKPTKVNGGR RN+P+H  +KW  FIDY  R
Sbjct  112  SLDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIR  171

Query  180  DVEVELAIKERVKNFPVPSFVWNEY-HQDQIINDRGIGIDVDFVKAALKIDGESKAKIQA  238
            DVEVE++I +++K+FPV ++  + Y   DQ INDRGI +   ++ +A  +D +SK  +  
Sbjct  172  DVEVEMTIAHKIKDFPVTAIE-QAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLN  230

Query  239  ELKTLTGLEKPNSVLQMISWLRE-HGVATDSLDKKAVKELLKTVDETTAQVLKLRQQAAK  297
            + K +TGLE+PNS  Q+++WL++ +G+   +L+KK+V+E LK     + ++L +R Q +K
Sbjct  231  QAKHITGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSK  290

Query  298  SSVSKYQAMMNCVCKDGRARGMFQFFGANRTGRWAGRLVQLQNLPQNHLPD--LKEAREL  355
            +SV KY+ M + +C D R RG+FQF+GA  TGRWAGR VQLQNL ++ ++D  L  AR+L
Sbjct  291  TSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDL  349

Query  356  FRTGDLESTELLYD--TQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWRS  413
            ++   ++  +LL +   QD LSQL+RT+F +  G+ + V DFSAIEARV++  A E+WR 
Sbjct  350  IKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRL  409

Query  414  KVFEQGKDIYCMSASQMFGVPVEKHGQNSELRQKGKIAELACGYGGSVGALKAMGALDMG  473
             VF+    IY  SASQMF VPVE   +   LRQKGK++ELA GY G+ GALKAMGAL+MG
Sbjct  410  DVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMG  469

Query  474  LSEEELQPLVNSWRQANPNIVLYWWDVDNAVKTAVKELLPTSTQNIQFEVKSGILFITLP  533
            + E+ELQ LV+SWR+ANPNIV +W   ++A   +VK      T+ ++F +K G+L I LP
Sbjct  470  IEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELP  529

Query  534  SGRKLAYIKPRIGENQFGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFSM  593
            SGR LAY K+ +GEN  G++ V + G +  ++W +L +YG K+VENIVQA +RD+LA+S+
Sbjct  530  SGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISI  589

Query  594  KQLN--DFKIVGHVHDEVIIECPIEQK-LDEVASLMGIAPYWLSDINLRADGYECFFYQK  650
             +L+  +FKIVGHVHDEVI+E P   + L E+ ++M  +  W  ++NL +DG+   FY K
Sbjct  590  ARLEASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK  649

Query  651  D  651
            D
Sbjct  650  D  650

88) CRES_0898 in NC_015673


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  486 bits (1834),  Expect = 2e-138, Method: Compositional matrix adjust.
 Identities = 300/659 (46%), Positives = 442/659 (68%), Gaps = 22/659 (3%)

Query  19   VDLETFSPVNLTKSGVYPYAEHPDFDVLLFGYSIDGNPVKVVDVASSEQLP-----AEVV  73
            +D+ET+S+ +++K G Y Y+E  DF++L+++YSIDG ++  +D++  ++ P         
Sbjct  3    IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFETFK  62

Query  74   EALVDPGVTKWAFNAAFERVCLSAWLARHHPDLIAGRNFLDPAQWRCTMVWSAYLGLPMS  133
             AL DP+V K AFNA FER CL+  + ++ P          P +W CTMV S  +GLP S
Sbjct  63   IALFDPAVKKYAFNANFERTCLAKHFNKQMP----------PEEWICTMVNSMRIGLPAS  112

Query  134  LEQVATVLDLPVRKDSAGKKLITRFCTPARPSVLNQGEMRNLPASDPDGWEQFISYNRRD  193
            L++V+ VL L  +KD AGK+LI  F  P +P+ +N G  RNLP  D + W+QFI Y  RD
Sbjct  113  LDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRD  172

Query  194  VEVELAIHDRLAGFPMPEAEWATYALDQNINDTGIRLDRVLVDHAVQCDRQHRATTLARA  253
            VEVE++I +++ +FP+   E A   +DQ+IND GI+L + L+  A   D+Q +   L +A
Sbjct  173  VEVEMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQA  232

Query  254  QELTGLENPNSPIQLKDWLTA-HGTPLQSLTKDEVAAALDTATGEVREVLQLRGELAKSS  312
            +++TGLENPNSP QL  WL   +G  + +L K  V   L  ATG  + +L++R +++K+S
Sbjct  233  KHITGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTS  292

Query  313  VKKYETMQHVAGRDGRGRGFLQFYGAGRTGRFAGRLVQVQNLPRNYLPD--LCEARDLVR  370
            VKKY+ M+++   D R RG++QFYGAG TGR AGR VQ+QNL ++Y++D  L  ARDL++
Sbjct  293  VKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIK  351

Query  371  TGEFEAVELLYDSVP-DTLSQLIRTAFVPADGHRFVVADFSAIEARVIAWLAGEATTLQA  429
               F+ ++LL +  P D LSQL+RT+F + +G+ + V+DFSAIEARVIAW A E   L+ 
Sbjct  352  EQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDV  411

Query  430  FRDGKDLYCETASRMFGVPVDKHGANAELRQKGKIAVLACGYQGGVGALKAMGALRMGLA  489
            F     +Y  +AS+MF VPV+       LRQKGK++ LA GYQGG GALKAMGAL MG+ 
Sbjct  412  FNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIE  471

Query  490  ESELQPLVDAWRAANPNVVQLWADINAAAIEAISTRQPTGVGALTFTVESGIMFVRLPSG  549
            E+ELQ LVD+WR ANPN+V++W   + AAI+++ +R+     ++ F +  G++ + LPSG
Sbjct  472  ENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSG  531

Query  550  RRLAYVKPKLGENRFGGTAITHEGIATGRKWGQLETYGGKLTENIVQAVARDLLTFGMHQ  609
            R LAY K+ +GEN  G+  +   G+   RKW++L TYGGKL ENIVQA ARDLL++++ +
Sbjct  532  RALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIAR  591

Query  610  VDRAGYRIVMHVHDEIVVET--ATATVDEICELMATAPDWAAGLPLAADGYACDFYMKD  666
            ++ +G++IV HVHDE++VE   ++  + EI  +M  + DWA GL L +DG++  FYMKD
Sbjct  592  LEASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

89) Ethha_1817 in NC_014828


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  485 bits (1829),  Expect = 3e-138, Method: Compositional matrix adjust.
 Identities = 306/673 (46%), Positives = 441/673 (66%), Gaps = 37/673 (5%)

Query  4    ISIDIETFSDVDLGKCGVYRYCSSPAFEILLFGYSVDGGPVKVVDLACGEKIP-----ED  58
            ++IDIET+S  D++KCG Y+Y  +  FEIL+++YS+DGG++  +D++  ++ P     E 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  59   ILDALTDDTVLKWAFNANFERVCLSRYLRDMGRGLDPFHDNHPLSLEHARFLNPEGWRCS  118
            +  AL D +V K AFNANFER CL++           F+ + P          PE W C+
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAK----------HFNKQMP----------PEEWICT  100

Query  119  MVWAATMGLPLSLKGVGAVLQLADQKMDEGKALIKYFSVPCAPTKANGGRTRNLPSDDPG  178
            MV +  +GLP SL  VG VL+L +QK   GK LI+YFS+PC PTK NGGRTRNLP +D  
Sbjct  101  MVNSMRIGLPASLDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLE  160

Query  179  KWATFKKYNQRDVEVEMMIQRKLRSFPVPDFVWDEY-HIDQEINDRGVRIDMDLVEKAID  237
            KW  F  Y  RDVEVEM I +K++ FPV  +  + Y  +DQ+INDRG+++   L+  A  
Sbjct  161  KWQQFIDYCIRDVEVEMTIAHKIKDFPVTAIE-QAYWVFDQHINDRGIKLSKSLMLGANV  219

Query  238  MDTRSRSELTEKMQAITNLENPNSVQQMKQWLSDN-GMEVDSLGKKAVTALLKTAPPELT  296
            +D +S+ EL ++ + IT LENPNS  Q+  WL D+ G+++ +L KK+V   LK A     
Sbjct  220  LDKQSKEELLNQAKHITGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAK  279

Query  297  EVLELRQQLAKSSVKKYQTMQRAVCSDSRARGMFMFYGANRTGRWAGRLIQLQNLPQNHL  356
             +LE+R Q++K+SVKKY+ M+  +CSD R RG+F FYGA  TGRWAGR +QLQNL ++ +
Sbjct  280  KMLEIRLQMSKTSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYI  338

Query  357  PD--LDAARALVKSGDYEAVKMIYEDVP-DTLSQLIRTAFIPKDGCRFYVADFSAIEARV  413
            +D  L+ AR L+K   ++ + ++ +  P D LSQL+RT+F + +G  + V+DFSAIEARV
Sbjct  339  SDTELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARV  398

Query  414  IAWYAGEKWKSDAFANGEDIYCSTARRMFHKPVVKHGVNGELRAKGKIAELACGYGGSTG  473
            IAWYA E+W+ D F     IY ++A +MF+ PV      + LR KGK++ELA GY G++G
Sbjct  399  IAWYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAG  458

Query  474  ALKAMGALEMGLSEDELPDIVSSWRDANQQIVKFWWDVDKAVMAAVKNHKTTRLGRLAFF  533
            ALKAMGALEMG+ E+EL ++V SWR+AN +IV+FW   + A + +VK++KT +   + F+
Sbjct  459  ALKAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFY  518

Query  534  WQAGMLFITLPSGRNLAYVKPKVGMNRFGGECITYEGVGGTKKWERLESYGPKFVENIVQ  593
             + G L I LPSGR LAY K+ VG N  G++ + + G++  +KW +L +YG K+VENIVQ
Sbjct  519  MKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQ  578

Query  594  ATSRDILCNSMKMLRHCD--VCMHIHDELVIEADPRVS--LDTLCEQMGRVPAWADGLVL  649
            AT+RD+L  S+  L   +  +  H+HDE+++E  PR S  L  +   M +   WA GL L
Sbjct  579  ATARDLLAISIARLEASGFKIVGHVHDEVIVEI-PRGSNGLKEIETIMNKPVDWAKGLNL  637

Query  650  RADGYVCDFYKKD  662
             +DG+   FY KD
Sbjct  638  NSDGFTSPFYMKD  650

90) CDHC02_1666 in NC_016802


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  481 bits (1814),  Expect = 5e-137, Method: Compositional matrix adjust.
 Identities = 300/660 (46%), Positives = 438/660 (67%), Gaps = 24/660 (3%)

Query  6    VDLETFSPVNLTKSGVYPYAEHPDFDVLLFGYSIDGNPVKVVDVASSEQLP-----AEVA  60
            +D+ET+S+ +++K G Y Y+E  DF++L+++YSIDG ++  +D++  ++ P         
Sbjct  3    IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFETFK  62

Query  61   EALVDPGVTKWAFNAAFERVCLSAWLARHHPDLIAGRNFLDPAQWRCTMVWSAYLGLPMS  120
             AL DP+V K AFNA FER CL+  + ++ P          P +W CTMV S  +GLP S
Sbjct  63   IALFDPAVKKYAFNANFERTCLAKHFNKQMP----------PEEWICTMVNSMRIGLPAS  112

Query  121  LDQVATVLDLPVRKDSAGKKLIRQFCTPATPSVFNQGGMRNPPASDPDGWEQFISYNRRD  180
            LD+V+ VL L  +KD AGK+LIR F  P  P+  N G  RN P  D + W+QFI Y  RD
Sbjct  113  LDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRD  172

Query  181  VEVELAIHDRLAGFPMPEAEWDTY-ALDQNVNDTGIRLDRVLVDNAVACDRQHRAATLTR  239
            VEVE++I +++ +FP+   E ++Y  +DQ++ND GI+L + L+  A   D+Q +   L +
Sbjct  173  VEVEMTIAHKIKDFPVTAIE-QAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQ  231

Query  240  AQELTGLENPNSPIQLKEWL-ADHGTPLQSLTKDEVAAALDTATGQVREVLLLRGELAKS  298
            A+++TGLENPNSP QL  WL  D+G  + +L K  V   L  ATG+ + +L +R +++K+
Sbjct  232  AKHITGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKT  291

Query  299  SVKKYEAMQHVAGRDGRGRGFLQFYGAGRTGRFAGRLVQVQNLPRNYLPD--LSEARSLV  356
            SVKKY+ M+++   D R RG++QFYGAG TGR AGR VQ+QNL ++Y++D  L  AR L+
Sbjct  292  SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI  350

Query  357  RTGNYDAVELLYDSVP-DTLSQLIRTAFIPADGHRFVVADFSAIEARVIAWLAGEATTLE  415
            +   +D ++LL +  P D LSQL+RT+F + +G+ + V+DFSAIEARVIAW A E   L+
Sbjct  351  KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD  410

Query  416  AFRDGKDLYCETASRMFGVPVDKHGANAELRQKGKIAVLACGYQGGVGALKAMGALRMGL  475
             F     +Y  +AS+MF VPV+       LRQKGK++ LA GYQGG GALKAMGAL MG+
Sbjct  411  VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGI  470

Query  476  AESELQPLVDAWRAANPNVVQLWADINAAAIEAISTRLPTSVGALTFTVESGIMFIRLPS  535
             E+ELQ LVD+WR ANPN+V++W   + AAI+++ +R      ++ F +  G++ I LPS
Sbjct  471  EENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPS  530

Query  536  GRRLAYVKPKLGENRFGGTAITHEGITTGRKWGQLETYGGKLTENIVQAVARDLLTFGMH  595
            GR LAY K+ +GEN  G+  +   G+   RKW++L TYGGKL ENIVQA ARDLL++++ 
Sbjct  531  GRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIA  590

Query  596  QVDRAGHRIVMHVHDEIVVET--ATATVDEICKLMAITPEWATGLPLAADGYVCDFYMKD  653
            +++ +G +IV HVHDE++VE   ++  + EI  +M    +WA GL L +DG+   FYMKD
Sbjct  591  RLEASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

91) L in NC_019042


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  481 bits (1814),  Expect = 5e-137, Method: Compositional matrix adjust.
 Identities = 304/661 (46%), Positives = 451/661 (69%), Gaps = 26/661 (3%)

Query  6    ISIDLETYCEIDLRKSGVYRYAEDDSFELLLFAVSVNNGPVTVYDLSKEKLA------QD  59
            ++ID+ETY   D+ K G Y+Y+E + FE+L++A S++ G+++  D++K          + 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  60   ILEALVDDRVIKWAFNASFERVCLSNWLKKYHPELLSFGFLSPVSWRCSMIWSAYLGLPL  119
            +  AL D  V K AFNA+FER CL+   K ++ ++      +P  W C+M+ S  +GLP 
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLA---KHFNKQM------PPEEWICTMVNSMRIGLPA  111

Query  120  SLEGVGTVLKLKDQKMKEGTDLIRYFCLPCKPTKVNGGRLRNFPHHAPDKWATFIDYNRR  179
            SL+ VG VL+L++QK K G +LIRYF +PCKPTKVNGGR RN+P+H  +KW  FIDY  R
Sbjct  112  SLDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIR  171

Query  180  DVDVELAIKERLKNFPVPDFVWDEY-LQDQIINDRGIGIDVDFVKAAIKIDGENKVKIQE  238
            DV+VE++I +++K+FPV  +  + Y + DQ INDRGI +   ++ +A  +D ++K  + +
Sbjct  172  DVEVEMTIAHKIKDFPVTAIE-QAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLN  230

Query  239  ELKTLTDLENPNSVLQMIGWLRE-HGVATDSLDKKAVKELLKTVDDSTAQVLKLRQQAAK  297
            + K +T+LENPNS  Q+++WL++ +G+   +L+KK+V+E LK   + + ++L +R Q +K
Sbjct  231  QAKHITGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSK  290

Query  298  SSVSKYQAMMNCVCKDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPD--LEEARDL  355
            +SV KY+ M + +C D R RG+FQFYGA  TGRWAGR VQLQNL ++ ++D  LE ARDL
Sbjct  291  TSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDL  349

Query  356  FRTGDLEATELLYE--TQDTLSQLIRTAFIPSKGKKFIVCDFSAIEARVLAHLAGERWRS  413
            ++   ++  +LL +   QD LSQL+RT+F +  G+ + V DFSAIEARV+A  A E+WR 
Sbjct  350  IKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRL  409

Query  414  KVFEEGKDIYCMSASQMFGVPVEKHGQNSELRQKGKIAELACGYGGSVGALKAMGAIDMG  473
             VF+    IY  SASQMF VPVE   +   LRQKGK++ELA GY G+ GALKAMGA++MG
Sbjct  410  DVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMG  469

Query  474  LTEEELQPLVNSWRLTNPNIVLLWWDVDNAVKTAVKELIPTSTHSIQFEVRSSILFITLP  533
            + E+ELQ LV+SWR +NPNIV +W   ++A   +VK      TH+++F ++ ++L I LP
Sbjct  470  IEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELP  529

Query  534  SGRKLSYIKPRIGENQFGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAYSL  593
            SGR L+Y K+ +GEN  G++ V + G +  ++W +L +YG K+VENIVQA +RD+LA S+
Sbjct  530  SGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISI  589

Query  594  KQL--KEFKIVGHVHDEVIIECPMEHK-IDKIASLMGIAPDWMSDINLRADGYECLFYQK  650
             +L    FKIVGHVHDEVI+E P   + +  I ++M  + DW  ++NL +DG+   FY K
Sbjct  590  ARLEASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK  649

Query  651  D  651
            D
Sbjct  650  D  650

92) Clo1100_3564 in NC_016791


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  480 bits (1808),  Expect = 2e-136, Method: Compositional matrix adjust.
 Identities = 316/674 (47%), Positives = 449/674 (67%), Gaps = 39/674 (5%)

Query  4    LEIDIESYSSVNLQKSGVYRYVEADDFEILLFGYSIDGGEVMVVDLVSGEKIP-----KE  58
            ++IDIE+YSS ++ K G Y+Y EA+DFEIL+++YSIDGG +  +D+   ++ P       
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  59   ILDALTDEEVTKWAFNAQFERICLSRYLSDLGINLDPFHDNHPLSKELARYLNPASWKCS  118
            +  AL D  V K AFNA+FER CL+                    K++ + + P  W C+
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLA--------------------KHFNKQMPPEEWICT  100

Query  119  MVWSAYMGLPLSLEGVGAVLGLEKQKLTEGKDLIRYFCVPCTPTKSNSGRTRNLPSNDEE  178
            MV S  +GLP SL+ VG VL L++QK   GK+LIRYF +PC PTK N+GRTRNLP +D E
Sbjct  101  MVNSMRIGLPASLDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLE  160

Query  179  KWQRFKDYNKRDVETEIQIQQRLIKFPVP---EDIWDEYHLDQEINDRGIRVDMDFVKQA  235
            KWQ+F DY  RDVE E+ I +++  FPV    +  W    +DQ+INDRGI++   ++  A
Sbjct  161  KWQQFIDYCIRDVEVEMTIAHKIKDFPVTAIEQAYW---VFDQHINDRGIKLSKSLMLGA  217

Query  236  IAMDEISHEKLMSAMQQLTELDNPNSVQQMKGWLSDN-GLETDTLGKKAVAELLKDAPEP  294
              +D  S E L++  +++T L+NPNS  Q+ +WL D+ GL+   L KK+V E LK+A   
Sbjct  218  NVLDKQSKEELLNQAKHITGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGK  277

Query  295  LAEVLKLRQQLAKSSVKKYTAMENAICADSRARGMFQFYGANRTGRFAGRLVQLQNLPQN  354
               +L +R Q++K+SVKKY  M++ +C+D R RG+FQFYGA  TGR AGR VQLQNL ++
Sbjct  278  AKKMLEIRLQMSKTSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKH  336

Query  355  HMPD--LKEARSIVKSGDFKTLEMLYEDIP-DTLSQLIRTAFVPKVGNKFIVADFSAIEA  411
             ++D  L  AR ++K   F  L++L +  P D LSQL+RT+F +  GN + V+DFSAIEA
Sbjct  337  YISDTELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEA  396

Query  412  RVLSWLAGEEWRTEVFASGGDIYCASASQMFKVPVEKHGVNGHLRQKGKIAELALGYGGS  471
            RV++W A E+WR +VF + G IY ASASQMF+VPVE     + LRQKGK++ELALGY G+
Sbjct  397  RVIAWYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGG  456

Query  472  VGALKamgalemgleeeelKPLVNAWRASNPNIVKFWWDVDRIVKKCIKENKSQETHNIK  531
             GALKAMGALEMG+EE+EL+ LV++WR +NPNIV+FW   +    + +K  K+++TH ++
Sbjct  457  AGALKAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVR  516

Query  532  FHCMSGMLFIVLPSGRQLAYVKPRIGENIFGGESVTYEGVGGTKKWERIESYGPKFVENI  591
            F    G L I LPSGR LAY K+ +GEN  G++ V + G++  +KW ++ +YG K+VENI
Sbjct  517  FYMKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENI  576

Query  592  VQAISRDILMYAMKTLRTCS--IVAHVHDEVIIE-ADPRMAIDSVCEQMSRVPPWAKGLL  648
            VQA +RD+L  ++  L + +  IV+HVHDEVI+E +    ++  +   M++   WAKGL 
Sbjct  577  VQATARDLLAISIARLEASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLN  636

Query  649  LNADGYECDFYKKD  662
            LN+DG+   FY KD
Sbjct  637  LNSDGFTSPFYMKD  650

93) CRES_1541 in NC_015673


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  480 bits (1808),  Expect = 2e-136, Method: Compositional matrix adjust.
 Identities = 304/660 (47%), Positives = 444/660 (68%), Gaps = 24/660 (3%)

Query  6    IDIETFSPVNLANSGVYPYADHDGFELLLFGYSIDGGPVEVVDLANGHQLP-----EKVL  60
            IDIET+S+ ++++ G Y Y++ ++FE+L+++YSIDGG++  +D+++ ++ P     E   
Sbjct  3    IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFETFK  62

Query  61   SALVDPLVVKWAFNATFERICLSSWLARQYPELMAGRRFLNPAQWRCTMVWSAYLGLPMS  120
             AL DP V K AFNA FER CL    A+++   M+      P +W CTMV S  +GLP S
Sbjct  63   IALFDPAVKKYAFNANFERTCL----AKHFNKQMP------PEEWICTMVNSMRIGLPAS  112

Query  121  LDQVATVLHLPVRKDSAGKKLIRQFCTPGTPSVFNLGGMRNPPASDPDGWEQFISYNRRD  180
            LD+V+ VL+L  +KD AGK+LIR F  P  P+  N G  RN P  D + W+QFI Y  RD
Sbjct  113  LDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRD  172

Query  181  VEVELAIHDRLADFPLPASEWDTY-ALDQNVNDTGIRLDRVLVDHAVACDRQHRATTLAR  239
            VEVE++I +++ DFP+ A E ++Y  +DQ++ND GI+L + L+  A   D+Q +   L +
Sbjct  173  VEVEMTIAHKIKDFPVTAIE-QAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQ  231

Query  240  AQELTGLENPNSPIQLKDWL-AAHGAPLQSLTKDEVAAALDTATGQVREVLLLRGELAKS  298
            A+++TGLENPNSP QL  WL   +G  + +L K  V   L  ATG+ + +L +R +++K+
Sbjct  232  AKHITGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKT  291

Query  299  SVKKYEAMQHVTGRDGRGRGFLQFYGAGRTGRFAGRLVQVQNLPRNYLPD--LAEARSLV  356
            SVKKY+ M+++   D R RG++QFYGAG TGR AGR VQ+QNL ++Y++D  L  AR L+
Sbjct  292  SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI  350

Query  357  RTGNYDAVELLYDSVPDTL-SQLIRTAFIPADGHRFVVADFSAIEARVIAWLAGEATTLE  415
            +   +D ++LL +  P+ L SQL+RT+F + +G+ + V+DFSAIEARVIAW A E   L+
Sbjct  351  KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD  410

Query  416  AFRDGKDLYCETASRMFGVPVDKHGANAELRQKGKIAVLACGYQGGVGALKAMGALRMGL  475
             F     +Y  +AS+MF VPV+       LRQKGK++ LA GYQGG GALKAMGAL MG+
Sbjct  411  VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGI  470

Query  476  AESELQPLVDAWRAANPNVVQLWADINAAAIEAISTRLPTSVGALTFTVESGIMFIRLPS  535
             E+ELQ LVD+WR ANPN+V++W   + AAI+++ +R      ++ F +  G++ I LPS
Sbjct  471  EENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPS  530

Query  536  GRRLAYVKPKLGENRFGGTAITHEGITTGRKWGQLETYGGKLTENIVQAVARDLLTFGMH  595
            GR LAY K+ +GEN  G+  +   G+   RKW++L TYGGKL ENIVQA ARDLL++++ 
Sbjct  531  GRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIA  590

Query  596  QVDRAGHRIVMHVHDEIVVET--ATATVDEICKLMAITPDWAAGLPLAADGYACDFYMKD  653
            +++ +G +IV HVHDE++VE   ++  + EI  +M    DWA GL L +DG++  FYMKD
Sbjct  591  RLEASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

94) BSA_6830 in NC_021485


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  479 bits (1804),  Expect = 3e-136, Method: Compositional matrix adjust.
 Identities = 312/661 (48%), Positives = 461/661 (70%), Gaps = 26/661 (3%)

Query  6    LSIDLETYCEVDLRKSGVYSYAEDDSFEILLLAVSVDNGPVTVYDLTK-ENLP-----DQ  59
            ++ID+ETY   D+ K G Y Y+E + FEIL++A S+D G+++  D+TK +N P     + 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  60   ILQALVNDSIIKWAFNASFERICLSNWLKKHHPKLLSEGFLSPNSWRCSIVWSAYLGLPL  119
            +  AL + ++ K AFNA+FER CL++ ++K+         ++P+ W C++V S  +GLP 
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQ---------MPPEEWICTMVNSMRIGLPA  111

Query  120  SLEGVGTVlklkeqklkeGGDVIRYFCLPYKPTKINGGRKRNFPHHAPDKWAAFINYNKR  179
            SL+ VG VL+L++QK K G ++IRYF +P KPTK+NGGR RN+P+H  +KW  FI+Y  R
Sbjct  112  SLDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIR  171

Query  180  DVEVELAIKNKLRNHPVPDFLWEEY-HQDQNINDSGIGIDVDFVKAAITIDEESKSKIQE  238
            DVEVE++I +K+++ PV  +  + Y   DQ+IND GI +   ++ +A  +D +SK  + +
Sbjct  172  DVEVEMTIAHKIKDFPVTAIE-QAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLN  230

Query  239  ELKELTGLENPNSVLQMIGWLRE-HGVTTNSLDKKAVKELLKVVDAKTTKVLKLRQQAAK  297
            + K++TGLENPNS  Q+++WL++ +G+   +L+KK+V+E LK   +K+ K+L +R Q +K
Sbjct  231  QAKHITGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSK  290

Query  298  SSVSKYQAMVNCVCLDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPD--LKEARDL  355
            +SV KY+ M + +C D R RG+FQFYGA  TGRWAGR VQLQNL ++ ++D  L  ARDL
Sbjct  291  TSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDL  349

Query  356  FKTGDLEATDLLYG--TQDTLSQLIRTAFVPSDGKKFIVCDFSAIEARVLSHLAGEKWRS  413
            +K   ++  DLL     QD LSQL+RT+F + +G+ + V DFSAIEARV++  A E+WR 
Sbjct  350  IKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRL  409

Query  414  MVFEQGKDIYCMSASQMFGVPVEKHGRNADLRQKGKIAELACGYGGAVGALKAMGAIDMG  473
             VF+    IY  SASQMF VPVE   +   LRQKGK++ELA GY G+ GALKAMGA++MG
Sbjct  410  DVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMG  469

Query  474  LDEQELQPLVDSWRQANPNIVLFWWDVDKAVKTAIKYQKQTETHGIQFKVRKGMLFITLP  533
            ++E+ELQ LVDSWR+ANPNIV FW   + A   ++K +K  +THG++F ++KG L I LP
Sbjct  470  IEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELP  529

Query  534  SGRKLAYVKPKMGENQFGGESVTYEGTGTAKRWERLESYGPKFVENIIQAISRDILAYSM  593
            SGR LAY K+ +GEN  G++ V + G +  ++W +L +YG K+VENI+QA +RD+LA S+
Sbjct  530  SGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISI  589

Query  594  KQL--KDFRIVGHVHDEIIIECDQ-SQNLEQIATLMGKAPYWMPDINLRADGYECLFYQK  650
             +L   +F+IVGHVHDE+I+E  + S+ L +I T+M K+  W  ++NL +DG+   FY K
Sbjct  590  ARLEASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK  649

Query  651  D  651
            D
Sbjct  650  D  650

95) LMHCC_2586 in NC_011660


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  462 bits (1740),  Expect = 3e-131, Method: Compositional matrix adjust.
 Identities = 286/553 (52%), Positives = 393/553 (72%), Gaps = 11/553 (1%)

Query  1    MVHGTLLGLPASLDMMSKALRLAQEKDNEGKALIRYFCMPCKPTKANGGRTRNYPEHASE  60
            MV++  +GLPASLD ++  LRL ++KD+ GK LIRYF +PCKPTK NGGRTRN PEH  E
Sbjct  101  MVNSMRIGLPASLDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLE  160

Query  61   KWAKFIEYCRQDVVVERSIAKKIAKFPFPEDEQRNWELDQRIADKGVRIDVDLVKHAIAC  120
            KW +FI+YC +DV VE +IA KI  FP    EQ  W +DQ+I D+G+++   L+  A   
Sbjct  161  KWQQFIDYCIRDVEVEMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVL  220

Query  121  QERYQASLSKKAKGLTGLENPNSVQQLKDWL-ADMGYPVSSLNKdsvselladedldedv  179
            + + +  L ++AK +TGLENPNS  QL  WL  D G  +++L+K   +      +     
Sbjct  221  DKQSKEELLNQAKHITGLENPNSPTQLLAWLKDDQGLDIPNLQK--KTVQEYLKEATGKA  278

Query  180  REMLLLRQEMSKTSIKKYEKMQHARCHDGRVRGLLQFNGANRTGRWAGRLVQVQNLPRNY  239
            + ML +R +MSKTS+KKY+KM++  C D RVRGL+QF GA  TGRWAGR VQ+QNL ++Y
Sbjct  279  KKMLEIRLQMSKTSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHY  337

Query  240  IKDIA-EVRKDL-KAGDYEAFEMMYSNVP-DVLSQLIRTAFIAEDGYTFDITDFSAIEAR  296
            I D   E+ +DL K   ++ ++++ +  P D+LSQL+RT+F AE+G  + ++DFSAIEAR
Sbjct  338  ISDTELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEAR  397

Query  297  VIAWLAGEQWRLDVFNSHGKIYEASASQMFHIPIEEVDKN--LRQKGKVSELALGYNGGV  354
            VIAW A EQWRLDVFN+HGKIYEASASQMF++P+E + K   LRQKGKVSELALGY+GG 
Sbjct  398  VIAWYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGA  457

Query  355  NALIAMGALEMGLKENELQGIVDAWRKASPAITSLWRGVEKHAKLAISTRKSQKYKGLTF  414
             AL AMGALEMG+ ENELQG+VD+WR+A+P I ++W++ +  A  ++ +RK++   G+ F
Sbjct  458  GALKAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRF  517

Query  415  YYEAGILFIKLPSGRNLAYFRAKLVPGKYGPQIC-YEGVT-DKGWRKQYTYGGKLVENIV  472
            Y   G+L I LPSGR LAY +A +     G+Q+  + G+  ++ W K  TYGGKLVENIV
Sbjct  518  YMKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIV  577

Query  473  QAIARDCLAISLRRIEDTGIDTVMHVHDEAITEVQESESSVDKLNAILAEPISWAPGLPL  532
            QA ARD LAIS+ R+E +G+  V HVHDE I E+  + +++  +++I+  P+ WA GL L
Sbjct  578  QATARDLLAISIARLEASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNL  637

Query  533  QGDGFSSDFYMKD  545
            ++DGF+S FYMKD
Sbjct  638  NSDGFTSPFYMKD  650

96) LMM7_0078 in NC_017537


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  462 bits (1740),  Expect = 3e-131, Method: Compositional matrix adjust.
 Identities = 286/553 (52%), Positives = 393/553 (72%), Gaps = 11/553 (1%)

Query  1    MVHGTLLGLPASLDMMSKALRLAQEKDNEGKALIRYFCMPCKPTKANGGRTRNYPEHASE  60
            MV++  +GLPASLD ++  LRL ++KD+ GK LIRYF +PCKPTK NGGRTRN PEH  E
Sbjct  101  MVNSMRIGLPASLDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLE  160

Query  61   KWAKFIEYCRQDVVVERSIAKKIAKFPFPEDEQRNWELDQRIADKGVRIDVDLVKHAIAC  120
            KW +FI+YC +DV VE +IA KI  FP    EQ  W +DQ+I D+G+++   L+  A   
Sbjct  161  KWQQFIDYCIRDVEVEMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVL  220

Query  121  QERYQASLSKKAKGLTGLENPNSVQQLKDWL-ADMGYPVSSLNKdsvselladedldedv  179
            + + +  L ++AK +TGLENPNS  QL  WL  D G  +++L+K   +      +     
Sbjct  221  DKQSKEELLNQAKHITGLENPNSPTQLLAWLKDDQGLDIPNLQK--KTVQEYLKEATGKA  278

Query  180  REMLLLRQEMSKTSIKKYEKMQHARCHDGRVRGLLQFNGANRTGRWAGRLVQVQNLPRNY  239
            + ML +R +MSKTS+KKY+KM++  C D RVRGL+QF GA  TGRWAGR VQ+QNL ++Y
Sbjct  279  KKMLEIRLQMSKTSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHY  337

Query  240  IKDIA-EVRKDL-KAGDYEAFEMMYSNVP-DVLSQLIRTAFIAEDGYTFDITDFSAIEAR  296
            I D   E+ +DL K   ++ ++++ +  P D+LSQL+RT+F AE+G  + ++DFSAIEAR
Sbjct  338  ISDTELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEAR  397

Query  297  VIAWLAGEQWRLDVFNSHGKIYEASASQMFHIPIEEVDKN--LRQKGKVSELALGYNGGV  354
            VIAW A EQWRLDVFN+HGKIYEASASQMF++P+E + K   LRQKGKVSELALGY+GG 
Sbjct  398  VIAWYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGA  457

Query  355  NALIAMGALEMGLKENELQGIVDAWRKASPAITSLWRGVEKHAKLAISTRKSQKYKGLTF  414
             AL AMGALEMG+ ENELQG+VD+WR+A+P I ++W++ +  A  ++ +RK++   G+ F
Sbjct  458  GALKAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRF  517

Query  415  YYEAGILFIKLPSGRNLAYFRAKLVPGKYGPQIC-YEGVT-DKGWRKQYTYGGKLVENIV  472
            Y   G+L I LPSGR LAY +A +     G+Q+  + G+  ++ W K  TYGGKLVENIV
Sbjct  518  YMKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIV  577

Query  473  QAIARDCLAISLRRIEDTGIDTVMHVHDEAITEVQESESSVDKLNAILAEPISWAPGLPL  532
            QA ARD LAIS+ R+E +G+  V HVHDE I E+  + +++  +++I+  P+ WA GL L
Sbjct  578  QATARDLLAISIARLEASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNL  637

Query  533  QGDGFSSDFYMKD  545
            ++DGF+S FYMKD
Sbjct  638  NSDGFTSPFYMKD  650

97) btf_225 in NC_020387


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  457 bits (1722),  Expect = 1e-129, Method: Compositional matrix adjust.
 Identities = 303/673 (46%), Positives = 442/673 (66%), Gaps = 36/673 (5%)

Query  4    LEIDIETFSSVSLQKCGVYKYAESPDFQIILFGYSVDSGEVKVVDLLQGETLP-----QD  58
            ++IDIET+SS  + KCG YKY+E+ DF+I++++YS+D+G +  +D+ + +  P     + 
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  59   ILDALTDDTVVKWAHNSGFERVCLSRYLADMGVSLDPFRDNHTLSQQDCTRFLNPTSWRC  118
            +  AL D +V K A N+ FER CL++ +                        + P  W C
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQ---------------------MPPEEWIC  99

Query  119  SMTWAAYLGLPLSLSgvgeilglekkkltegkelVKFFCQPCAPTKANSGRVRNLPSDAP  178
            +M  +  +GLP SL  VGE+L L+++K   GK+L+++F  PC PTK N+GR RNLP +  
Sbjct  100  TMVNSMRIGLPASLDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDL  159

Query  179  EKWDLFKSYNLRDVEVEMQITQRLSKLPVPDFVWDEY-HLSEEINDRGIGVDMPFVSACL  237
            EKW+ F  Y +RDVEVEM I++++  +PV  +  + Y  + ++INDRGI +  +++ +  
Sbjct  160  EKWQQFIDYCIRDVEVEMTIAHKIKDFPVTAIE-QAYWVFDQHINDRGIKLSKSLMLGAN  218

Query  238  SLDAKSTDALTDAMRELTALENPNSVAQVKGWL-ADNGLEIDTLGKKEVSARLKTAPAEL  296
             LD +S + L +  +++T+LENPNS +Q+ +WL  D+GL+I  L KK V   LK A +  
Sbjct  219  VLDKQSKEELLNQAKHITGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKA  278

Query  297  VPVLQLRQQLAKSSVKKYTAMENAVCTDSRVRGMLMFLGASRTGRFAGRLVQLQNLPQNH  356
              +L++R Q++K+SVKKY  M++ +C+D RVRG++ F GA+ TGR AGR VQLQNL ++ 
Sbjct  279  KKMLEIRLQMSKTSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHY  337

Query  357  IPD--LDEARALAGAEDYDALEMLYEDIP-DTLSQLIRTAFVPQNGRKFIVADFSAIEAR  413
            I+D  L+ AR L   + +D L++L +  P D LSQL+RT+F +++G  + V+DFSAIEAR
Sbjct  338  ISDTELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEAR  397

Query  414  VISWFAKEQWKLDAFAKGEDIYCATASQMFLVPVIKHGVNGELRQKGKVAELACGYGGSV  473
            VI+W+AKEQW+LD F     IY A+ASQMF VPV      + LRQKGKV+ELA GY G+ 
Sbjct  398  VIAWYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGA  457

Query  474  GALKAMGALEMGLKESELQPIVDSWRGANPNIVKFWWAVDRAAKAAIRGKTHTTAYGVEF  533
            GALKAMGALEMG+ E+ELQ +VDSWR ANPNIV+FW A + AA  +++++    + GV F
Sbjct  458  GALKAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRF  517

Query  534  SYESGFLFIKLPSDRRLAYVKPRIGENRFGGEAITYEGTGGTKKWERLETYGPKLVENIV  593
                GFL I LPS+R LAY K+ +GEN  G++ + + G +  +KW +L TYG KLVENIV
Sbjct  518  YMKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIV  577

Query  594  QATSRDILCHAMKTLRCC--NIVAHVHDEVIIEADR-IMSLDVVCEQMGRTPPWAPGLIL  650
            QAT+RD+L  ++  L     +IV+HVHDEVI+E  R   +L  +   M +   WA GL L
Sbjct  578  QATARDLLAISIARLEASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNL  637

Query  651  SADGYECDFYKKD  663
            ++DG+   FY KD
Sbjct  638  NSDGFTSPFYMKD  650

98) HMPREF0573_11260 in NC_014246


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  457 bits (1721),  Expect = 1e-129, Method: Compositional matrix adjust.
 Identities = 296/655 (46%), Positives = 421/655 (65%), Gaps = 23/655 (3%)

Query  22   LALDLETFSAVNLSQCGVYRYCDDPSFRILL--CsysvddsdvvtvdlasGEQLPPEVVA  79
            + +D+ET+S+ ++S+CG Y+Y +   F IL+   S   +    + +     E + ++  +
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  80   ---ALDDPSVIKWAYNAAFERTCLSAHLGHRLDPTGWRCTMVWAATLGLPLSLKDVGTVL  136
               AL DP+V K A+NA FERTCL+ H+  ++ P  W CTMV +  +GLP SL  VG VL
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL  120

Query  137  GLAHQKLAEGKDLIKYFSLPTKTG------IRHQPSDDSAAWALFKQYNARDVEVETTIR  190
             L +QK   GK+LI+YFS+P K         R+ P +D   W  F +Y  RDVEVE TI 
Sbjct  121  RLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA  180

Query  191  RKLSHHPVP---DEVWGQYEVDQRINDRGIHIDTRLATNAMACDKKYRKRTLARAQELTG  247
            +K+ + PV    +  W     DQ+INDRGI +   L   A   DK+ +   L +A+++TG
Sbjct  181  HKIKDFPVTAIEQAYWV---FDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG  237

Query  248  LDNPASPLQLQSWL-AEQGCKISSMAKEDVDSALDTATGSVREALELRQDLSKSSVAKYR  306
            L+NP SP QL +WL  +QG  I+++ K  V+  L  ATG  +  LE+R ++SK+SV KY 
Sbjct  238  LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKKYN  297

Query  307  KMADATCADGRAHGLLQFYGASRTGRWAGRLVQVQNLPRNYLPD--LAQARSLVHYGDFD  364
            KM D  C+D R +GL+QFYGA+ TGRWAGR VQ+QNL ++Y++D  L  AR L+    FD
Sbjct  298  KMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQRFD  356

Query  365  VLEMLYPSVP-DTLSQLIRTAFIPSENHRFIVADYSAIEARVLAWLAGEETTLAAFTNGE  423
             L++L    P D LSQL+RT+F + E + + V+D+SAIEARV+AW A E+  L  F    
Sbjct  357  DLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNTHG  416

Query  424  DLYCATASAMFGVPVEKHGANAELRQKGKIAVLACGYNGSVGALKAMGALKMGLTASELQ  483
             +Y A+AS MF VPVE       LRQKGK++ LA GY+G+ GALKAMGAL MG+  +ELQ
Sbjct  417  KIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQ  476

Query  484  PIVDAWRAANPNIVAMWHDVDQTAIQAITTRSTVTLGNLSFTGTKGMLFITLPSGRRLAY  543
             +VD+WR ANPNIV  W   +++AI+++ +R T     + F   KG L I LPSGR LAY
Sbjct  477  GLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAY  536

Query  544  VKPGLGVNRFGGTSITYWGQGINRKWQQLETYGGKLVENIVQATARDLLAEAITRIENAG  603
             K+++G N  G+  + + G ++NRKW +L TYGGKLVENIVQATARDLLA +I+R+E +G
Sbjct  537  PKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASG  596

Query  604  HEVVMHIHDEVVVDESKDSGTTVADICTLMNQLPTWALGLPIDAAGYKCDFYMKD  658
              +V H+HDEV+V+ ++ ++  + +I T+MN+   WA GL +++ G+   FYMKD
Sbjct  597  FKIVGHVHDEVIVEIPR-GSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

99) Amet_4009 in NC_009633


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  456 bits (1719),  Expect = 2e-129, Method: Compositional matrix adjust.
 Identities = 309/656 (48%), Positives = 443/656 (68%), Gaps = 19/656 (2%)

Query  7    LHCDIETYSSVNLAKCGVYRYVQADDFEILLFAYSTDGSEVKIIDLARGEKIP-----PL  61
            ++ DIETYSS +++KCG Y+Y +A+DFEIL++AYS DG+ +  ID+++ ++ P       
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  62   ILSALEDDKVIKYAHNASFERICFSRFLGYPVGKYISPESWRCTMTWAAYMglplslvgv  121
            +  AL D  V KYA NA+FER C+++ +     K ++PE W CTM  +  +GLP SL  V
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFN----KQMPPEEWICTMVNSMRIGLPASLDKV  116

Query  122  gavlglgKQKMTEGKDLIRFFCGPCSPTKTNGNRTRNLPSDDPEKWERFKSYNIRDVEAE  181
            G VL L +QK   GK+LIR+F  PC PTK NG RTRNLP +D EKW++F  Y IRDVE E
Sbjct  117  GEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVE  176

Query  182  MEIEQKLIKFPVPDFIWDEY-HLSERINDSGIKVDMDFVKQAIAMNEISHTKLMDQMQEI  240
            M I +K+  FPV  +  + Y  + ++IND GIK+   ++  A  ++  S   L++Q ++I
Sbjct  177  MTIAHKIKDFPVTAIE-QAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI  235

Query  241  TELDNPNSVQQMKDWLSDN-GLETDTLGKKAVAELLKDAPEHLAEVLKLRQQLAKSSVKK  299
            T L+NPNS  Q+  WL D+ GL+   L KK+V E LK+A      +L +R Q++K+SVKK
Sbjct  236  TGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIRLQMSKTSVKK  295

Query  300  YTAMENAVCSDGRIRGMFTFLGANRTGRFSSKIVQLQNLPQNHM--MDLKEARSIVKNGD  357
            Y  M++ +CSD R+RG+F F GA  TGR +++ VQLQNL ++ +   +L  AR ++K+  
Sbjct  296  YNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQR  354

Query  358  SEALELLYEDIP-DTLSQLIRTAFVPKEGNKFIVADFSAIEARVLSWLAGEQWRNEVFAN  416
             + L+LL +  P D LSQL+RT+F + EGN + V+DFSAIEARV++W A EQWR +VF  
Sbjct  355  FDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNT  414

Query  417  GGDIYCASASQMFRVPVEKHGVNAHLRQKGKIAELALGYGGSVGALKamgalemgleeee  476
             G IY ASASQMF VPVE       LRQKGK++ELALGY G+ GALKAMGALEMG+EE+E
Sbjct  415  HGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENE  474

Query  477  lKPLVNAWRASNPNIVKFWWDVDREVKKCIKEKKSQEVQNIKFHYMSGMLFIVLPSGRKL  536
            L+ LV++WR +NPNIV+FW   +    + +K +K+++ + ++F    G L I LPSGR L
Sbjct  475  LQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRAL  534

Query  537  AYVKPNIGENIFGGESVTYEGVGATKKWERIESYGPKFVENIVQAISRDILMYAMKTLST  596
            AY K+++GEN  G++ V + G++  +KW ++ +YG K+VENIVQA +RD+L  ++  L +
Sbjct  535  AYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEA  594

Query  597  CS--IVAHVHDEVIIEADQ-SLSLDMVCKQMGRVPPWAKGLLLDADGYECDFYKKD  649
             +  IV+HVHDEVI+E  + S +L  +   M +   WAKGL L++DG+   FY KD
Sbjct  595  SGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMKD  650

100) polA1 in NC_017317


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  446 bits (1679),  Expect = 3e-126, Method: Compositional matrix adjust.
 Identities = 298/673 (45%), Positives = 451/673 (68%), Gaps = 38/673 (5%)

Query  4    LSIDIETFSSANIakggaykyaaaddFEILLFAYSVDDSPVTVVSIATGETVP-----AD  58
            ++IDIET+SS +I+K GAYKY+ A+DFEIL++AYS+D+++++ + ++  +  P       
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  59   IISALMDPSVTKYAFNAQFERVCLSRWLQQQSLLPKEEFIDPGGWRCTMVWCASIGLPMS  118
            +  AL DP+V KYAFNA+FER CL++ +++Q        + P  W CTMV    IGLP S
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQ--------MPPEEWICTMVNSMRIGLPAS  112

Query  119  LDQAAKVLSLKAQKISEGKSLIQYFCLPTKPREVAAPVLFDASGMTHRNHPQTAPERWVD  178
            LD+ + VL L+ QK   GK+LI+YF +P KP  V        +G   RN P+   E+W +
Sbjct  113  LDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKV--------NGGRTRNLPEHDLEKWQQ  164

Query  179  FIEYNRRDVETEQEMRTKLERFPLPD-----WVWDQYATDQRINDNGIRIDLDLAAHAIT  233
            FI+Y  RDVE E  +  K+  FP+       WV DQ     +IND GI++   L   A  
Sbjct  165  FIDYCIRDVEVEMTIAHKIKDFPVTAIEQAYWVFDQ-----HINDRGIKLSKSLMLGANV  219

Query  234  VDDVYREHCVDEAQELTGLENPGSPTQLQNWLNVN-GCPIESMAKEHVQAALKTATGSTR  292
            +D   +E+ +++A+++TGLENP SPTQL  WL+ + G  I ++ K  VQ  LK ATG ++
Sbjct  220  LDKQSKEELLNQAKHITGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAK  279

Query  293  RVLELRQDMSRSSVKKYQAMQQCAIPATSRAHGLLQFYGAGRTGRWAGRLVQVQNLPRNY  352
            ++LE+R +MS++SVKKY+ M++  + +  R +GL+QFYGAG TGRWAGR VQ+QNL ++Y
Sbjct  280  KMLEIRLQMSKTSVKKYNKMHD-MMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHY  337

Query  353  IQD--LAGARELIRGEHHNLLELLFDSVP-DTLSQLIRTAFIPAEGKKFIVADYSAIEAR  409
            I D  L  AR+LI+ ++ + L+LL++  P D LSQL+RT+F + EG+ + V+D+SAIEAR
Sbjct  338  ISDTELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEAR  397

Query  410  VLAWLAGQDTTIQAFVDGKDLYCATAAQMFGVPVEKNGQNADLRQKGKIAVLACGYQGGV  469
            V+AW A ++  ++ F     +Y A+A+QMF VPVE   +   LRQKGK++ LA GYQGG 
Sbjct  398  VIAWYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGA  457

Query  470  GAIKTMGGEQLGFTEDEMRTIVDKWRSANRKIVAYWYAIDEAAKHTITTGEPSTVRSITM  529
            GA+K+MG+ ++G+ E+E++ +VD WR+AN +IV +W A +EAA +T+ +      +++  
Sbjct  458  GALKAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRF  517

Query  530  RIDGGMLLITLPSGRSLVYPKAGIGINRFGNDTITFHGVGINRKFVKQETYGGKLVENIT  589
             +  G L+I LPSGR+L YPKA++G N  G++ + F G+++NRK  K  TYGGKLVENI 
Sbjct  518  YMKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIV  577

Query  590  QAVARDLLAHALTTLEKAGHAIVMHIHDEAVIE-ADATTPVDVVCRLMEQAPEWASGIPL  648
            QA ARDLLA +++ LE +G  IV H+HDE ++E + ++  +  +  +M+++ +WA G+ L
Sbjct  578  QATARDLLAISIARLEASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNL  637

Query  649  TADGYECPFYQKD  661
             +DG+  PFY KD
Sbjct  638  NSDGFTSPFYMKD  650

101) polA1 in NC_015683


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  446 bits (1679),  Expect = 3e-126, Method: Compositional matrix adjust.
 Identities = 299/673 (45%), Positives = 451/673 (68%), Gaps = 38/673 (5%)

Query  4    LSIDIETFSSANIakggaykyaaaddFEILLFAYSVDDSPVTVVSIATGETVP-----AD  58
            ++IDIET+SS +I+K GAYKY+ A+DFEIL++AYS+D+++++ + ++  +  P       
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  59   IISALTDPSVTKYAFNAQFERVCLSRWLQQQSLLPKEEFIDPGGWRCTMVWCASIGLPMS  118
            +  AL DP+V KYAFNA+FER CL++ +++Q        + P  W CTMV    IGLP S
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQ--------MPPEEWICTMVNSMRIGLPAS  112

Query  119  LDQAAKVLSLKAQKISEGKSLIQYFCLPTKPREVAAPVLFDASGMTHRNHPQTAPERWVD  178
            LD+ + VL L+ QK   GK+LI+YF +P KP  V        +G   RN P+   E+W +
Sbjct  113  LDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKV--------NGGRTRNLPEHDLEKWQQ  164

Query  179  FIEYNRRDVETEQEMRTKLERFPLPD-----WVWDQYATDQRINDNGIRIDLDLAAHAIT  233
            FI+Y  RDVE E  +  K+  FP+       WV DQ     +IND GI++   L   A  
Sbjct  165  FIDYCIRDVEVEMTIAHKIKDFPVTAIEQAYWVFDQ-----HINDRGIKLSKSLMLGANV  219

Query  234  VDDVYREHCVDEAQEITGLENPGSPTQLQNWLNVN-GCPIESMAKEHVQAALKTATGSTR  292
            +D   +E+ +++A++ITGLENP SPTQL  WL+ + G  I ++ K  VQ  LK ATG ++
Sbjct  220  LDKQSKEELLNQAKHITGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAK  279

Query  293  RVLELRQDMSRSSVKKYQAMQQCAIPATSRAHGLLQFYGAGRTGRWAGRLVQVQNLPRNY  352
            ++LE+R +MS++SVKKY+ M++  + +  R +GL+QFYGAG TGRWAGR VQ+QNL ++Y
Sbjct  280  KMLEIRLQMSKTSVKKYNKMHD-MMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHY  337

Query  353  IQD--LAGARELIRGEHHNLLELLFDSVP-DTLSQLIRTAFIPAEGKKFIVADYSAIEAR  409
            I D  L  AR+LI+ ++ + L+LL++  P D LSQL+RT+F + EG+ + V+D+SAIEAR
Sbjct  338  ISDTELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEAR  397

Query  410  VLAWLAGQDTTIQAFVDGKDLYCATAAQMFGVPVEKNGQNADLRQKGKIAVLACGYQGGV  469
            V+AW A ++  ++ F     +Y A+A+QMF VPVE   +   LRQKGK++ LA GYQGG 
Sbjct  398  VIAWYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGA  457

Query  470  GAIKTMGGEQLGFTEDEMRTIVDKWRSANRKIVAYWYAIDEAAKHTITTGEPSTVRSITM  529
            GA+K+MG+ ++G+ E+E++ +VD WR+AN +IV +W A +EAA +T+ +      +++  
Sbjct  458  GALKAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRF  517

Query  530  RIDGGMLLITLPSGRSLVYPKAGIGINRFGNDTITFHGVGINRKFVKQETYGGKLVENIT  589
             +  G L+I LPSGR+L YPKA++G N  G++ + F G+++NRK  K  TYGGKLVENI 
Sbjct  518  YMKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIV  577

Query  590  QAVARDLLAHALTTLEKAGHAIVMHIHDEAVIE-ADATTPVDVVCRLMEQAPEWASGIPL  648
            QA ARDLLA +++ LE +G  IV H+HDE ++E + ++  +  +  +M+++ +WA G+ L
Sbjct  578  QATARDLLAISIARLEASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNL  637

Query  649  TADGYECPFYQKD  661
             +DG+  PFY KD
Sbjct  638  NSDGFTSPFYMKD  650

102) CULC0102_1300 in NC_018101


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  445 bits (1677),  Expect = 4e-126, Method: Compositional matrix adjust.
 Identities = 298/673 (45%), Positives = 451/673 (68%), Gaps = 38/673 (5%)

Query  4    LSIDIETFSSANIakggaykyaaaddFEILLFAYSVDDSPVTVVSIATGETVP-----AD  58
            ++IDIET+SS +I+K GAYKY+ A+DFEIL++AYS+D+++++ + ++  +  P       
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  59   IISALTDPSVTKYAFNAQFERVCLSRWLQQQSLLPKEEFIDPGGWRCTMVWCASIGLPMS  118
            +  AL DP+V KYAFNA+FER CL++ +++Q        + P  W CTMV    IGLP S
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFNKQ--------MPPEEWICTMVNSMRIGLPAS  112

Query  119  LDQAAKVLSLKAQKISEGKSLIQYFCLPTKPREVAAPVLFDASGMTHRNHPQTAPERWVD  178
            LD+ + VL L+ QK   GK+LI+YF +P KP  V        +G   RN P+   E+W +
Sbjct  113  LDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKV--------NGGRTRNLPEHDLEKWQQ  164

Query  179  FIEYNRRDVETEQEMRTKLERFPLPD-----WVWDQYATDQRINDNGIRIDLDLAAHAIT  233
            FI+Y  RDVE E  +  K+  FP+       WV DQ     +IND GI++   L   A  
Sbjct  165  FIDYCIRDVEVEMTIAHKIKDFPVTAIEQAYWVFDQ-----HINDRGIKLSKSLMLGANV  219

Query  234  VDDVYREHCVDEAQELTGLENPGSPTQLQNWLNVN-GCPIESMAKEHVQAALKTATGSTR  292
            +D   +E+ +++A+++TGLENP SPTQL  WL+ + G  I ++ K  VQ  LK ATG ++
Sbjct  220  LDKQSKEELLNQAKHITGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAK  279

Query  293  RVLELRQDMSRSSVKKYQAMQQCAIPATSRAHGLLQFYGAGRTGRWAGRLVQVQNLPRNY  352
            ++LE+R +MS++SVKKY+ M++  + +  R +GL+QFYGAG TGRWAGR VQ+QNL ++Y
Sbjct  280  KMLEIRLQMSKTSVKKYNKMHD-MMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHY  337

Query  353  IQD--LAGARELIRGEHHNLLELLFDSVP-DTLSQLIRTAFIPAEGKKFIVADYSAIEAR  409
            I D  L  AR+LI+ ++ + L+LL++  P D LSQL+RT+F + EG+ + V+D+SAIEAR
Sbjct  338  ISDTELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEAR  397

Query  410  VLAWLAGQDTTIQAFIDGKDLYCATAAQMFGVPVEKNGQNADLRQKGKIAVLACGYQGGV  469
            V+AW A ++  ++ F     +Y A+A+QMF VPVE   +   LRQKGK++ LA GYQGG 
Sbjct  398  VIAWYAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGA  457

Query  470  GAIKTMGGEQLGFTEDEMRTIVDKWRSANHKIVAYWYAIDEAAKHTITTGEPSTVRSITM  529
            GA+K+MG+ ++G+ E+E++ +VD WR+AN +IV +W A +EAA +T+ +      +++  
Sbjct  458  GALKAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRF  517

Query  530  RIDGGMLLITLPSGRSLVYPKAGIGINRFGNDTITFHGVGINRKFVKQETYGGKLVENIT  589
             +  G L+I LPSGR+L YPKA++G N  G++ + F G+++NRK  K  TYGGKLVENI 
Sbjct  518  YMKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIV  577

Query  590  QAVARDLLAHALTTLEKAGHAIVMHIHDEAVIE-ADSTTPVDVVCRLMEQAPEWASGIPL  648
            QA ARDLLA +++ LE +G  IV H+HDE ++E + ++  +  +  +M+++ +WA G+ L
Sbjct  578  QATARDLLAISIARLEASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKGLNL  637

Query  649  TADGYECPFYQKD  661
             +DG+  PFY KD
Sbjct  638  NSDGFTSPFYMKD  650

103) OBV_43170 in NC_016048


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  434 bits (1635),  Expect = 8e-123, Method: Compositional matrix adjust.
 Identities = 295/678 (44%), Positives = 442/678 (66%), Gaps = 38/678 (5%)

Query  5    LNIDLETYSSVPIGKAGLYKYAQSPDFQILLFGYSLDGMPVQVMDLTQT------GAYIP  58
            +NID+ETYSS  I+K G YKY+++ DF+IL+++YS+DG ++  +D+T+       + +  
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  59   QNVAGWLFDPQCVKHAFNAAFEWYCLSRYFGLEKRRDWTPEIWLPQWRDTQLHALYCGYP  118
             ++A  LFDP   K AFNA FE+ CL++ F     ++  PE W+     T ++++  G P
Sbjct  61   FKIA--LFDPAVKKYAFNANFERTCLAKHFN----KQMPPEEWIC----TMVNSMRIGLP  110

Query  119  AALKNVGPAMGLPEDKQKLRTGGALIRYFCVPCKPTKANGGRVRNLPQHDPAKWDLFKTY  178
            A+L +VG  + L ++K+K  +G  LIRYF +PCKPTK NGGR RNLP+HD  KW+ F  Y
Sbjct  111  ASLDKVGEVLRLQNQKDK--AGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDY  168

Query  179  NAGDVVAEQEIERRLSVVPVPDEVQQQWVRDQIINLHGVAVDRELVDGAIEIGSIVHETQ  238
               DV  E  I +++   PV    Q  WV DQ IN +G+ + + L+ GA  ++    E  
Sbjct  169  CIRDVEVEMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEEL  228

Query  239  LQEARELTGLANPNSRDQLLKWLNEELKDDLPDVRKNTVTDLLAQGVPSDKAARMLELRQ  298
            L++A+++TGL NPNS  QLL WL+++   D+P+++K+TV + L +  +++KA +MLE+R 
Sbjct  229  LNQAKHITGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKE--ATGKAKKMLEIRL  286

Query  299  ELSKTSTKKYNAIETCVCADGRIRGLLQFYGANRTGREAGRLVQVQNLPHDTVPAE--AA  356
            ++SKTS KKYN ++  +C+D R+RGL+QFYGA  TGR AGR VQ+QNL  + ++      
Sbjct  287  QMSKTSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEI  345

Query  357  ARELVKFRNLDGLKAVYGNVPQA-LSALIRTSLIAAPGMTFVDADFSAIEARVIAWLSGE  415
            AR+L+K + +D+L  +    PQ  LS L+RT++ A  G  +  +DFSAIEARVIAW + E
Sbjct  346  ARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKE  405

Query  416  EWVLDVFRTHGKIYETTAAQMFGVPFDRIQKGNPEYAYRKKGKVATLALGYQGSKGALIN  475
            +W LDVF THGKIYE++A+QMF VP + I KG+P    R+KGKV+ LALGYQG+ GAL  
Sbjct  406  QWRLDVFNTHGKIYEASASQMFNVPVESITKGDP---LRQKGKVSELALGYQGGAGAL--  460

Query  476  MRKTLGMTEEDLPEADMPDIVRRWRSANPHTVQFWYDVNDAAYRAVTSGQTTTVGRVTIA  535
              K++G  E ++ E ++ ++V  WR+ANP+ V+FW   ++AA  +V S +T     V   
Sbjct  461  --KAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVR--  516

Query  536  REIYRDAGLDLLTIRLPCGRKLYYPGPHIGKNHFGEDSILYWGQD-GANWKPVETYGGKL  594
              +Y   G  +L I LP GR L YP + +G N  G + + + G D   +W  + TYGGKL
Sbjct  517  --FYMKKG--FLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKL  572

Query  595  VENITQAVARDCLFYAMEQLNAAGYPIVFDIHDEVVLEVPEGLADLNKVVEIMSRPIPWA  654
            VENI QA ARD L  ++ +L+A+G+ IV ++HDEV++E+P G  +L+ +  IM++P+ WA
Sbjct  573  VENIVQATARDLLAISIARLEASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWA  632

Query  655  PGLPLNADGWVDTYFKKD  672
             GL LN+DG    ++ KD
Sbjct  633  KGLNLNSDGFTSPFYMKD  650

104) OBV_01840 in NC_016048


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  434 bits (1635),  Expect = 9e-123, Method: Compositional matrix adjust.
 Identities = 291/676 (44%), Positives = 440/676 (66%), Gaps = 34/676 (5%)

Query  5    LNIDLETFSSVPIGKAGLYKYAQSPDFQILLFGYSLDGMPVQVMDLTQTGA-CIPQNVAG  63
            +NID+ET+SS  I+K G YKY+++ DF+IL+++YS+DG ++  +D+T+ +   +  +   
Sbjct  1    MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET  60

Query  64   W---LFDPQCVKHAFNAAFEWYCLSRYFGLEQRRDWTPEIWLPQWRDTRLHALYCGYTAA  120
                LFDP   K AFNA FE+ CL++ F     ++  PE W+     T ++++  G  A+
Sbjct  61   FKIALFDPAVKKYAFNANFERTCLAKHFN----KQMPPEEWIC----TMVNSMRIGLPAS  112

Query  121  LKNVGPAMGLPEDKQKLRTGGALIRYFCVPCKPTKANGGRTRNLPQHDPAKWDLFKTYNA  180
            L +VG  + L ++K+K  +G  LIRYF +PCKPTK NGGRTRNLP+HD  KW+ F  Y  
Sbjct  113  LDKVGEVLRLQNQKDK--AGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCI  170

Query  181  GDVVAEQEIERRLSVVPVPDEVQQQWVRDQIINLHGVAVDRELVDGAIEIGSVVHETQLQ  240
             DV  E  I +++   PV    Q  WV DQ IN +G+ + + L+ GA  ++    E  L+
Sbjct  171  RDVEVEMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLN  230

Query  241  EAKELTGLANPNSRDQLLKWLNEELKDDLPDVRKNTVTDLLAQGVPSDKAARMLELRQEL  300
            +AK++TGL NPNS  QLL WL+++   D+P+++K+TV + L +  +++KA +MLE+R ++
Sbjct  231  QAKHITGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKE--ATGKAKKMLEIRLQM  288

Query  301  SKTSTKKYNAIETCVCADGRIRGLLQFYGANRTGREAGRLVQVQNLPHDTVPAE--AAAR  358
            SKTS KKYN ++  +C+D R+RGL+QFYGA  TGR AGR VQ+QNL  + ++      AR
Sbjct  289  SKTSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIAR  347

Query  359  ELVKSRNLDGLKAVYGNVPQA-LSALIRTSLIAAPGMAFVDADFSAIEARVIAWLSGEKW  417
            +L+K + +D+L  +    PQ  LS L+RT++ A  G  +  +DFSAIEARVIAW + E+W
Sbjct  348  DLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQW  407

Query  418  VLDVFRTHGKIYETTAAQMFGVPFDRIKKGNPEYAYRKKGKVATLALGYQGSKGALINMR  477
             LDVF THGKIYE++A+QMF VP + I KG+P    R+KGKV+ LALGYQG+ GAL    
Sbjct  408  RLDVFNTHGKIYEASASQMFNVPVESITKGDP---LRQKGKVSELALGYQGGAGAL----  460

Query  478  KTLGMTEEDLPETDMPDIVRRWRSANPHTVQFWYDVNDAAYRAVISGQATTVGCVTIARE  537
            K++G  E ++ E ++ ++V  WR+ANP+ V+FW   ++AA  +V S ++     V     
Sbjct  461  KAMGALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVR----  516

Query  538  IYREAELDFLTIRLPCGRKLYYPGPHIGKNHFGEDSILYWGQD-GANWKPVETYGGKLVE  596
            +Y     +FL I LP GR L YP + +G N  G + + + G D   +W  + TYGGKLVE
Sbjct  517  FYMKK--GFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVE  574

Query  597  NITQAVARDCLFYAMEQLDAAGYSIVFDIHDEVVLEVPQQAASLDKVVEIISRPIPWAPG  656
            NI QA ARD L  ++ +L+A+G+ IV ++HDEV++E+P+ + +L  +  I+++P+ WA G
Sbjct  575  NIVQATARDLLAISIARLEASGFKIVGHVHDEVIVEIPRGSNGLKEIETIMNKPVDWAKG  634

Query  657  LPLNADGWVDTYFKKD  672
            L LN+DG    ++ KD
Sbjct  635  LNLNSDGFTSPFYMKD  650

105) AXY_13930 in NC_018704


> NC_007793_P4|43|G43|87161801|YP_494120.1|Staphylococcus_aureus_subsp._aureus_USA300_FPR3757|-|35487..37439|polA|SAUSA300_1423|phage 
related DNA polymerase family A
Length=650

 Score =  360 bits (1352),  Expect = 1e-100, Method: Compositional matrix adjust.
 Identities = 228/469 (49%), Positives = 323/469 (69%), Gaps = 13/469 (2%)

Query  7    MGLPLSLESVGAVLGLEKQKLTEGKDLIRYFCIPCKPTKANGGRTRNFPKHDRDRWQRFK  66
            +GLP SL+ VG VL L++QK   GK+LIRYF IPCKPTK NGGRTRN+P HD ++WQ+F 
Sbjct  107  IGLPASLDKVGEVLRLQNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFI  166

Query  67   EYNARDVETEMLIQEKLFKFPVPDFIWKEY-EMDQIINDRGIAIDMDFVKQAVYIDGVSS  125
            +Y  RDVE EM I +K+  FPV  +  + Y   DQ INDRGI +   ++  A  +D  S 
Sbjct  167  DYCIRDVEVEMTIAHKIKDFPVTAIE-QAYWVFDQHINDRGIKLSKSLMLGANVLDKQSK  225

Query  126  ENLMTVMQDITKLENPNSVQQMKGWLLEN-GIETESLGKKAVAKLLESAKEPYKTVLELR  184
            E+L+   ++IT LENPNS  Q+ +WL ++ G++  +L KK+V   L  A    K +LE+R
Sbjct  226  EELLNQAKHITGLENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEATGKAKKMLEIR  285

Query  185  QKLAKSSIKKYAAMENAVCGDGRARGMFQFYGANRTGRFSGRLIQLQNLPQNHMKD--LG  242
             +++K+S+KKY  M++ +C+D R RG+FQFYGA  TGR +GR +QLQNL ++ + D  L 
Sbjct  286  LQMSKTSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELE  344

Query  243  EARSLVRSKNTEALELLYEDVP-DTLSQLIRTSFIPKKDKKFIVADFSAIEARVIAWLAN  301
             AR L++ +  + L+LL +  P D LSQL+RT+F +  ++ + V+DFSAIEARVIAW A+
Sbjct  345  IARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAK  404

Query  302  EKWRIDVFADGGDIYCASASQMFNIPVEKNGINGHLRQKGKIAELALGYGG------SIG  355
            E+WR+DVF   G IY ASASQMFN+PVE     + LRQKGK++ELALGY G      ++G
Sbjct  405  EQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG  464

Query  356  ALDMGLKEEELQPLVYAWRQSNPKITKLWWDVDRAAKNCVKEKTPTETHGIKFIYQSGML  415
            AL+MG+ E+ELQ LV +WR++NP+I ++W   + AA N VK +   +THG++F  + G L
Sbjct  465  ALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAINTVKSRKTHHTHGVRFYMKKGFL  524

Query  416  FIVLPSGRKLAYVKPRMGENKFGGEAVTYEGVGGTKKWERIESYGPKKV  464
             I LPSGR LAY K+ +GEN  G++ V + G++  +KW ++ +YG K V
Sbjct  525  MIELPSGRALAYPKASVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLV  573