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Homologs of EF2326 gene of NC_004668_R1

117

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) EF2326
( NP_815981.1 )

group II intron reverse transcriptase maturase

NC_004668
(Enterococcus faecalis V583)

0.0

100

2) SANR_1257
( YP_008500966.1 )

group II intron reverse transcriptase maturase

NC_022239
(Streptococcus anginosus C238)

0.0

3) SANR_1863
( YP_008501531.1 )

group II intron reverse transcriptase maturase

NC_022239
(Streptococcus anginosus C238)

0.0

4) Ccel_2751
( YP_002507036.1 )

RNA-directed DNA polymerase

NC_011898
(Clostridium cellulolyticum H10)

2e-177

5) EUS_14180
( YP_007775457.1 )

Retron-type reverse transcriptase

NC_021011
(Eubacterium siraeum 70/3)

4e-151

6) SAIL_7240
( YP_008117343.1 )

Retron-type RNA-directed DNA polymerase

NC_021507
(Streptococcus agalactiae ILRI112)

8e-144

7) EFAU004_01857
( YP_005355059.1 )

HNH endonuclease domain protein

NC_017022
(Enterococcus faecium Aus0004)

5e-143

8) EFAU004_02738
( YP_005355936.1 )

HNH endonuclease domain protein

NC_017022
(Enterococcus faecium Aus0004)

5e-143

9) EFAU085_00528
( YP_008394052.1 )

HNH endonuclease domain protein

NC_021994
(Enterococcus faecium AUS0085)

5e-143

10) EFAU085_02802
( YP_008396322.1 )

HNH endonuclease domain protein

NC_021994
(Enterococcus faecium AUS0085)

5e-143

11) HMPREF0351_11819
( YP_006376425.1 )

RNA-directed DNA polymerase

NC_017960
(Enterococcus faecium DO)

5e-143

12) HMPREF0351_12739
( YP_006377345.1 )

RNA-directed DNA polymerase (reverse transcriptase):HNH endonuclease

NC_017961
(Enterococcus faecium DO)

5e-143

13) BCAH187_C0016
( YP_002336027.1 )

group II intron reverse transcriptase/maturase

NC_011655
(Bacillus cereus AH187)

8e-140

14) BCAH187_A3699
( YP_002339641.1 )

group II intron reverse transcriptase/maturase

NC_011658
(Bacillus cereus AH187)

8e-140

15) BCAH820_3675
( YP_002452625.1 )

group II intron reverse transcriptase/maturase

NC_011773
(Bacillus cereus AH820)

8e-140

16) BCAH820_B0018
( YP_002454905.1 )

group II intron reverse transcriptase/maturase

NC_011777
(Bacillus cereus AH820)

8e-140

17) BCE_3691
( NP_979988.1 )

reverse transcriptase/endonuclease

NC_003909
(Bacillus cereus ATCC 10987)

8e-140

18) BCE_A0120
( NP_982127.1 )

reverse transcriptase

NC_005707
(Bacillus cereus ATCC 10987)

8e-140

19) BCN_3481
( YP_005106014.1 )

group II intron reverse transcriptase/maturase

NC_016771
(Bacillus cereus NC7401)

8e-140

20) BCN_P011
( YP_005150031.1 )

group II intron reverse transcriptase/maturase

NC_016792
(Bacillus cereus NC7401)

8e-140

21) BCQ_3462
( YP_002531179.1 )

reverse transcriptase

NC_011969
(Bacillus cereus Q1)

8e-140

22) BCQ_PI125
( YP_002533302.1 )

group II intron reverse transcriptase/maturase

NC_011973
(Bacillus cereus Q1)

8e-140

23) BCE_A0034
( NP_982041.1 )

group II intron reverse transcriptase/maturase

NC_005707
(Bacillus cereus ATCC 10987)

7e-139

24) BAA_A0035
( YP_002860734.1 )

group II intron reverse transcriptase/maturase

NC_012656
(Bacillus anthracis A0248)

4e-134

25) GBAA_pXO1_0035
( YP_016366.2 )

group II intron reverse transcriptase/maturase

NC_007322
(Bacillus anthracis Ames Ancestor)

4e-134

26) BAMEG_A0034
( YP_002811470.1 )

group II intron reverse transcriptase/maturase

NC_012579
(Bacillus anthracis CDC 684)

4e-134

27) H9401_5514
( YP_006203979.1 )

Group II intron reverse transcriptase/maturase

NC_017726
(Bacillus anthracis H9401)

4e-134

28) BACI_pCIXO100350
( YP_003786846.1 )

group ii intron reverse transcriptase/maturase

NC_014331
(Bacillus cereus CI)

4e-134

29) CKL_0583
( YP_001393985.1 )

reverse transcriptase/maturase family protein

NC_009706
(Clostridium kluyveri DSM 555)

1e-132

30) CKR_0515
( YP_002470980.1 )

hypothetical protein

NC_011837
(Clostridium kluyveri NBRC 12016)

1e-132

31) Desgi_4410
( YP_007947327.1 )

Retron-type reverse transcriptase

NC_021184
(Desulfotomaculum gibsoniae DSM 7213)

3e-131

32) PPSC2_p0117
( YP_003965579.1 )

Group II intron reverse transcriptase maturase

NC_014628
(Paenibacillus polymyxa SC2)

4e-131

33) CLJ_0278
( YP_002860583.1 )

group II intron reverse transcriptase/maturase

NC_012654
(Clostridium botulinum 657)

3e-130

34) CLJ_B3105
( YP_002863861.1 )

group II intron reverse transcriptase/maturase

NC_012658
(Clostridium botulinum 657)

3e-130

35) BMQ_1837
( YP_003562300.1 )

reverse transcriptase (RNA-dependent DNA polymerase)

NC_014019
(Bacillus megaterium QM B1551)

9e-130

36) EC1_04470
( YP_007797734.1 )

Retron-type reverse transcriptase

NC_021019
(Eubacterium cylindroides T2-87)

7e-126

37) Halha_0349
( YP_007314447.1 )

Retron-type reverse transcriptase

NC_019978
(Halobacteroides halobius DSM 5150)

2e-125

38) DCF50_p1257
( YP_006913248.1 )

Retron-type reverse transcriptase

NC_018867
(Dehalobacter sp. CF)

4e-123

39) ltrA
( YP_006910204.1 )

Retron-type reverse transcriptase

NC_018866
(Dehalobacter sp. DCA)

4e-123

40) SeseC_00946
( YP_006042680.1 )

group II intron reverse transcriptase maturase

NC_017582
(Streptococcus equi ATCC 35246)

2e-119

41) SeseC_01915
( YP_006043453.1 )

group II intron reverse transcriptase maturase

NC_017582
(Streptococcus equi ATCC 35246)

2e-119

42) BMB171_P0059
( YP_003667675.1 )

group II intron reverse transcriptase/maturase

NC_014172
(Bacillus thuringiensis BMB171)

4e-118

43) CT43_P281100
( YP_005569546.1 )

Group II intron reverse transcriptase/maturase

NC_017203
(Bacillus thuringiensis CT-43)

4e-118

44) CT43_P83085
( YP_005569962.1 )

Group II intron reverse transcriptase/maturase

NC_017206
(Bacillus thuringiensis CT-43)

4e-118

45) H175_85p067
( YP_007482338.1 )

Retron-type RNA-directed DNA polymerase

NC_020383
(Bacillus thuringiensis IS5056)

4e-118

46) H175_285p107
( YP_007482487.1 )

Retron-type RNA-directed DNA polymerase

NC_020384
(Bacillus thuringiensis IS5056)

4e-118

47) Halha_0167
( YP_007314274.1 )

Retron-type reverse transcriptase

NC_019978
(Halobacteroides halobius DSM 5150)

2e-117

48) CT43_P127058
( YP_005569366.1 )

Group II intron reverse transcriptase/maturase

NC_017202
(Bacillus thuringiensis CT-43)

2e-115

49) CT43_P127077
( YP_005569385.1 )

Group II intron reverse transcriptase/maturase

NC_017202
(Bacillus thuringiensis CT-43)

2e-115

50) ltrA3
( YP_006928690.1 )

group II intron-encoded protein LtrA

NC_018877
(Bacillus thuringiensis Bt407)

7e-115

51) ltrA
( YP_006931072.1 )

group II intron-encoded protein LtrA

NC_018879
(Bacillus thuringiensis Bt407)

7e-115

52) CT43_P72011
( YP_005569803.1 )

group II intron reverse transcriptase/maturase

NC_017205
(Bacillus thuringiensis CT-43)

7e-115

53) CT43_CH3943
( YP_005573897.1 )

RNA-directed DNA polymerase

NC_017208
(Bacillus thuringiensis CT-43)

7e-115

54) H175_ch4006
( YP_007480466.1 )

Retron-type RNA-directed DNA polymerase

NC_020376
(Bacillus thuringiensis IS5056)

7e-115

55) BCAH187_C0165
( YP_002335901.1 )

group II intron reverse transcriptase/maturase

NC_011655
(Bacillus cereus AH187)

9e-115

56) BCAH187_A1017
( YP_002336990.1 )

group II intron reverse transcriptase/maturase

NC_011658
(Bacillus cereus AH187)

9e-115

57) BCAH187_A1054
( YP_002337025.1 )

group II intron reverse transcriptase/maturase

NC_011658
(Bacillus cereus AH187)

9e-115

58) BCAH187_A1884
( YP_002337839.1 )

group II intron reverse transcriptase/maturase

NC_011658
(Bacillus cereus AH187)

9e-115

59) BCAH187_A4056
( YP_002339991.1 )

group II intron reverse transcriptase/maturase

NC_011658
(Bacillus cereus AH187)

9e-115

60) BCAH187_A4163
( YP_002340095.1 )

group II intron reverse transcriptase/maturase

NC_011658
(Bacillus cereus AH187)

9e-115

61) BCN_0838
( YP_005103371.1 )

group II intron reverse transcriptase/maturase

NC_016771
(Bacillus cereus NC7401)

9e-115

62) BCN_0873
( YP_005103406.1 )

group II intron reverse transcriptase/maturase

NC_016771
(Bacillus cereus NC7401)

9e-115

63) BCN_3836
( YP_005106369.1 )

group II intron reverse transcriptase/maturase

NC_016771
(Bacillus cereus NC7401)

9e-115

64) BCN_P146
( YP_005150166.1 )

group II intron reverse transcriptase/maturase

NC_016792
(Bacillus cereus NC7401)

9e-115

65) OBV_08540
( YP_004880558.1 )

putative RNA-directed DNA polymerase

NC_016048
(Oscillibacter valericigenes Sjm18-20)

2e-114

66) pE33L466_0466
( YP_245937.1 )

group II intron reverse transcriptase/maturase

NC_007103
(Bacillus cereus E33L)

2e-114

67) BCN_1696
( YP_005104229.1 )

IepA

NC_016771
(Bacillus cereus NC7401)

2e-114

68) BCE_3857
( NP_980154.1 )

reverse transcriptase/endonuclease protein

NC_003909
(Bacillus cereus ATCC 10987)

2e-114

69) Bsph_p115
( YP_001695704.1 )

group II intron reverse transcriptase/maturase

NC_010381
(Lysinibacillus sphaericus C3-41)

4e-114

70) Bsph_4038
( YP_001699636.1 )

COX1/OXI3 intron 2 protein

NC_010382
(Lysinibacillus sphaericus C3-41)

4e-114

71) SCI_1288
( YP_008499209.1 )

hypothetical protein

NC_022238
(Streptococcus constellatus C1050)

1e-112

72) SCRE_1229
( YP_008495619.1 )

hypothetical protein

NC_022236
(Streptococcus constellatus C232)

1e-112

73) SCR2_1229
( YP_008511381.1 )

hypothetical protein

NC_022245
(Streptococcus constellatus C818)

1e-112

74) BMB171_P0101
( YP_003667716.1 )

group II intron reverse transcriptase/maturase

NC_014172
(Bacillus thuringiensis BMB171)

3e-112

75) CD630_05060
( YP_001086980.1 )

Reverse transcriptase/maturase/endonuclease,Group II intron

NC_009089
(Clostridium difficile 630)

1e-111

76) BCN_3944
( YP_005106477.1 )

IepA

NC_016771
(Bacillus cereus NC7401)

1e-111

77) BCA_3916
( YP_002751176.1 )

reverse transcriptase/endonuclease

NC_012472
(Bacillus cereus 03BB102)

2e-110

78) bcf_18955
( YP_005120425.1 )

Retron-type reverse transcriptase

NC_016779
(Bacillus cereus F837/76)

2e-110

79) BALH_3447
( YP_896190.1 )

group II intron

NC_008600
(Bacillus thuringiensis Al Hakam)

2e-110

80) YBT020_18725
( YP_005567391.1 )

group II intron

NC_017200
(Bacillus thuringiensis YBT-020)

2e-110

81) matK
( YP_005961057.1 )

maturase K

NC_017543
(Paenibacillus polymyxa M1)

1e-107

82) BpOF4_20684
( YP_003429024.1 )

group II intron reverse transcriptase/maturase

NC_013792
(Bacillus pseudofirmus OF4)

2e-104

83) H175_285p101
( YP_007482481.1 )

Retron-type RNA-directed DNA polymerase

NC_020384
(Bacillus thuringiensis IS5056)

5e-104

84) BCAH820_B0013
( YP_002454900.1 )

group II intron reverse transcriptase/maturase

NC_011777
(Bacillus cereus AH820)

8e-103

85) MC28_D026
( YP_006815314.1 )

group II intron reverse transcriptase/maturase

NC_018686
(Bacillus thuringiensis MC28)

6e-102

86) MC28_D126
( YP_006815414.1 )

group II intron reverse transcriptase/maturase

NC_018686
(Bacillus thuringiensis MC28)

6e-102

87) HBHAL_1226
( YP_006178880.1 )

group II intron reverse transcriptase/maturase

NC_017668
(Halobacillus halophilus DSM 2266)

1e-101

88) HBHAL_1667
( YP_006179311.1 )

group II intron reverse transcriptase/maturase

NC_017668
(Halobacillus halophilus DSM 2266)

1e-101

89) HBHAL_2489
( YP_006180108.1 )

group II intron reverse transcriptase/maturase

NC_017668
(Halobacillus halophilus DSM 2266)

1e-101

90) HBHAL_2493
( YP_006180112.1 )

group II intron reverse transcriptase/maturase

NC_017668
(Halobacillus halophilus DSM 2266)

1e-101

91) HBHAL_2515
( YP_006180135.1 )

group II intron reverse transcriptase/maturase

NC_017668
(Halobacillus halophilus DSM 2266)

1e-101

92) BCQ_PI121
( YP_002533298.1 )

IepA

NC_011973
(Bacillus cereus Q1)

1e-98

93) CT43_P281094
( YP_005569541.1 )

Group II intron reverse transcriptase/maturase

NC_017203
(Bacillus thuringiensis CT-43)

2e-98

94) CT43_CH0563
( YP_005570546.1 )

RNA-directed DNA polymerase

NC_017208
(Bacillus thuringiensis CT-43)

2e-98

95) H175_ch1542
( YP_007478003.1 )

Retron-type RNA-directed DNA polymerase

NC_020376
(Bacillus thuringiensis IS5056)

2e-98

96) CT43_P281112
( YP_005569558.1 )

group II intron-encoded protein

NC_017203
(Bacillus thuringiensis CT-43)

2e-98

97) H175_285p119
( YP_007482499.1 )

Retron-type RNA-directed DNA polymerase

NC_020384
(Bacillus thuringiensis IS5056)

2e-98

98) MC28_E108
( YP_006815606.1 )

Group II intron reverse transcriptase/maturase

NC_018687
(Bacillus thuringiensis MC28)

1e-97

99) MC28_E182
( YP_006815680.1 )

Group II intron reverse transcriptase/maturase

NC_018687
(Bacillus thuringiensis MC28)

1e-97

100) MC28_F012
( YP_006815695.1 )

Group II intron reverse transcriptase/maturase

NC_018688
(Bacillus thuringiensis MC28)

1e-97

101) CbC4_4059
( YP_004385635.1 )

group II intron reverse transcriptase/mutarase

NC_015417
(Clostridium botulinum BKT015925)

4e-96

102) B1NLA3E_02610
( YP_007908801.1 )

group II intron reverse transcriptase/maturase

NC_021171
(Bacillus sp. 1NLA3E)

7e-93

103) B1NLA3E_02640
( YP_007908807.1 )

group II intron reverse transcriptase/maturase

NC_021171
(Bacillus sp. 1NLA3E)

7e-93

104) B1NLA3E_13640
( YP_007910975.1 )

group II intron reverse transcriptase/maturase

NC_021171
(Bacillus sp. 1NLA3E)

7e-93

105) HD73_3406
( YP_007422505.1 )

hypothetical protein

NC_020238
(Bacillus cereus HD73)

3e-92

106) HD73_4132
( YP_007423231.1 )

hypothetical protein

NC_020238
(Bacillus cereus HD73)

3e-92

107) HD73_7507
( YP_007425104.1 )

hypothetical protein

NC_020240
(Bacillus cereus HD73)

3e-92

108) ltrA1
( YP_006925289.1 )

group II intron-encoded protein LtrA

NC_018877
(Bacillus thuringiensis Bt407)

3e-92

109) ltrA2
( YP_006925700.1 )

group II intron-encoded protein LtrA

NC_018877
(Bacillus thuringiensis Bt407)

3e-92

110) CT43_P281096
( YP_005569543.1 )

hypothetical protein

NC_017203
(Bacillus thuringiensis CT-43)

3e-92

111) CT43_CH0952
( YP_005570932.1 )

RNA-directed DNA polymerase

NC_017208
(Bacillus thuringiensis CT-43)

3e-92

112) H175_ch0545
( YP_007477007.1 )

Retron-type RNA-directed DNA polymerase

NC_020376
(Bacillus thuringiensis IS5056)

3e-92

113) H175_ch0965
( YP_007477426.1 )

Retron-type RNA-directed DNA polymerase

NC_020376
(Bacillus thuringiensis IS5056)

3e-92

114) H175_285p103
( YP_007482483.1 )

Retron-type RNA-directed DNA polymerase

NC_020384
(Bacillus thuringiensis IS5056)

3e-92

115) HD73_3932
( YP_007423031.1 )

hypothetical protein

NC_020238
(Bacillus cereus HD73)

4e-92

116) EFAU004_01851
( YP_005355053.1 )

group II intron reverse transcriptase maturase

NC_017022
(Enterococcus faecium Aus0004)

2e-91

117) EFAU085_00532
( YP_008394056.1 )

group II intron reverse transcriptase maturase

NC_021994
(Enterococcus faecium AUS0085)

2e-91

• Sequence Alignments

1) EF2326 in NC_004668


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  993 bits (3763),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 628/628 (100%), Positives = 628/628 (100%), Gaps = 0/628 (0%)

Query  1    MPVLTSGQQERKSKQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAY  60
            MPVLTSGQQERKSKQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAY
Sbjct  1    MPVLTSGQQERKSKQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAY  60

Query  61   RTIKKNTGSDTSGVDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRP  120
            RTIKKNTGSDTSGVDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRP
Sbjct  61   RTIKKNTGSDTSGVDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRP  120

Query  121  LGIPTIVDRIVQQCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVV  180
            LGIPTIVDRIVQQCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVV
Sbjct  121  LGIPTIVDRIVQQCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVV  180

Query  181  DLDIKGFFDNISHTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGG  240
            DLDIKGFFDNISHTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGG
Sbjct  181  DLDIKGFFDNISHTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGG  240

Query  241  ILSPLLANIVLNELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHA  300
            ILSPLLANIVLNELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHA
Sbjct  241  ILSPLLANIVLNELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHA  300

Query  301  VRYADDFKIFCATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDflgfklkv  360
            VRYADDFKIFCATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKV
Sbjct  301  VRYADDFKIFCATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKV  360

Query  361  rkkgkkyvvrSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYC  420
            RKKGKKYVVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYC
Sbjct  361  RKKGKKYVVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYC  420

Query  421  ISTEVSHDFSRLAFSINKQLRNRLKGDLSKKGQLRNGFIKEKYGASRQMRFLHGRPVVPL  480
            ISTEVSHDFSRLAFSINKQLRNRLKGDLSKKGQLRNGFIKEKYGASRQMRFLHGRPVVPL
Sbjct  421  ISTEVSHDFSRLAFSINKQLRNRLKGDLSKKGQLRNGFIKEKYGASRQMRFLHGRPVVPL  480

Query  481  GYVQSKNAQHKRKSINKYTVKGREQIHKNLAIDTATMLWLMRNPVKGRTIEYADNRISLY  540
            GYVQSKNAQHKRKSINKYTVKGREQIHKNLAIDTATMLWLMRNPVKGRTIEYADNRISLY
Sbjct  481  GYVQSKNAQHKRKSINKYTVKGREQIHKNLAIDTATMLWLMRNPVKGRTIEYADNRISLY  540

Query  541  AAQYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKY  600
            AAQYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKY
Sbjct  541  AAQYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKY  600

Query  601  LKSLNLDNKQIEKLNKLRSMAEMPPIIL  628
            LKSLNLDNKQIEKLNKLRSMAEMPPIIL
Sbjct  601  LKSLNLDNKQIEKLNKLRSMAEMPPIIL  628

2) SANR_1257 in NC_022239


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  647 bits (2446),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 390/624 (63%), Positives = 516/624 (83%), Gaps = 2/624 (0%)

Query  1    MVTVSTSKQTLKQSKIRYTEYYDLQKVLDDLYEDNSKNKVFSNLMELITSRENIKLAYRS  60
            ++T +   +  KQ KIR +EYYD++  +D LY ++ K+K F++LME+I S ENIKLAYR+
Sbjct  3    VLTSGQQERKSKQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRT  62

Query  61   IKGNKGSHTAGVDGRTIKHLSRLNEEEYISLIQKQFHWYKPRPVKRVEILKPNGKIRPLG  120
            IK N GS+T+GVD RTI +L++L+EEEY+ LI+KQF  Y P PV+RVEI KPNGK RPLG
Sbjct  63   IKKNTGSDTSGVDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLG  122

Query  121  IPTIVDRIVQQCILQILEPICEAKFHDSSYGFRPNRSTEHAIAECARLMQIQHLHYVVDI  180
            IPTIVDRIVQQCILQ++EPICEAKF ++S GFRPNRS+E AIA+C RL+Q+QHL  VVD+
Sbjct  123  IPTIVDRIVQQCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDL  182

Query  181  DIQGFFDNVYHAKLIRQLWNLGIQDKKLLCIIKEMLKADIVMPDKEVITPTKGTPQGGIL  240
            DI+GFFDN+ H+KLIRQ+W LGI+DKKLLCIIKEMLKA +V+P+ E   P++GTPQGGIL
Sbjct  183  DIKGFFDNISHTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGIL  242

Query  241  SPLLSNVVLNELDWWVSSQWLTMPTHYPYKQRTNSQGTEIKSHTYRALRTSNLKEIYIVR  300
            SPLL+N+VLNELDWW++SQW  MPT   +K R+N+QGTEIKSH+YRALR S LKE+  VR
Sbjct  243  SPLLANIVLNELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVR  302

Query  301  YADDFKIFCRNYYDAKRTYQAVTKWLQDRLKLNVSEEKSKITNLKQRYSEflgfklkvkp  360
            YADDFKIFC    DA R+Y+A   WL+DRL L++S +KSK+ NLK++YS+FLGFKLKV+ 
Sbjct  303  YADDFKIFCATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRK  362

Query  361  kgkkfvvQSHISDKALKNAKEDISKCVADIKRPANEKEQYEAIAKYNATVSGLHNYYQIA  420
            KGKK+VV+SH+SDKA K+A E +S  V  +  +++++ Q+  + KYN+ V+GLH+YY I+
Sbjct  363  KGKKYVVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCIS  422

Query  421  TNVSLDFTKIAFHIKKQMNNRL--DIKTSGTLNKGFIKEKYGKSKQLRFLNGHPLIPVGY  478
            T+VS DF+++AF I+KQ+ NRL  D+   G L +GFIKEKYG S+Q+RFL+G+P++P+GY
Sbjct  423  TEVSHDFSRLAFSINKQLRNRLKGDLSKKGQLRNGFIKEKYGASRQMRFLHGRPVVPLGY  482

Query  479  IRTkdakhkkkvvnkytvkGRAFIHKNLQIDVDTLVWLMKHPVLDKSIEFADNRISLFAA  538
            +++K+A+HK+K +NKYTVKGR  IHKNL ID  T++WLM++PV +++IE+ADNRISL+AA
Sbjct  483  VQSKNAQHKRKSINKYTVKGREQIHKNLAIDTATMLWLMRNPVKGRTIEYADNRISLYAA  542

Query  539  QYGRCGVTGIKLTPNDIHCHHKIPLEQGGTDSYSNLILVTEAVHILIHATKEDTIQKYIK  598
            QYG+C+VTGI + ++DIHCHHK+P+ +GG+D Y+NLILV+ AVHILIHA+ E TI+KY+K
Sbjct  543  QYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLK  602

Query  599  ELGLTNKQIEKCNKLRKMAELPLI  622
             L L NKQIEK NKLR MAE+P I
Sbjct  603  SLNLDNKQIEKLNKLRSMAEMPPI  626

3) SANR_1863 in NC_022239


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  647 bits (2446),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 390/624 (63%), Positives = 516/624 (83%), Gaps = 2/624 (0%)

Query  1    MVTVSTSKQTLKQSKIRYTEYYDLQKVLDDLYEDNSKNKVFSNLMELITSRENIKLAYRS  60
            ++T +   +  KQ KIR +EYYD++  +D LY ++ K+K F++LME+I S ENIKLAYR+
Sbjct  3    VLTSGQQERKSKQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRT  62

Query  61   IKGNKGSHTAGVDGRTIKHLSRLNEEEYISLIQKQFHWYKPRPVKRVEILKPNGKIRPLG  120
            IK N GS+T+GVD RTI +L++L+EEEY+ LI+KQF  Y P PV+RVEI KPNGK RPLG
Sbjct  63   IKKNTGSDTSGVDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLG  122

Query  121  IPTIVDRIVQQCILQILEPICEAKFHDSSYGFRPNRSTEHAIAECARLMQIQHLHYVVDI  180
            IPTIVDRIVQQCILQ++EPICEAKF ++S GFRPNRS+E AIA+C RL+Q+QHL  VVD+
Sbjct  123  IPTIVDRIVQQCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDL  182

Query  181  DIQGFFDNVYHAKLIRQLWNLGIQDKKLLCIIKEMLKADIVMPDKEVITPTKGTPQGGIL  240
            DI+GFFDN+ H+KLIRQ+W LGI+DKKLLCIIKEMLKA +V+P+ E   P++GTPQGGIL
Sbjct  183  DIKGFFDNISHTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGIL  242

Query  241  SPLLSNVVLNELDWWVSSQWLTMPTHYPYKQRTNSQGTEIKSHTYRALRTSNLKEIYIVR  300
            SPLL+N+VLNELDWW++SQW  MPT   +K R+N+QGTEIKSH+YRALR S LKE+  VR
Sbjct  243  SPLLANIVLNELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVR  302

Query  301  YADDFKIFCRNYYDAKRTYQAVTKWLQDRLKLNVSEEKSKITNLKQRYSEflgfklkvkp  360
            YADDFKIFC    DA R+Y+A   WL+DRL L++S +KSK+ NLK++YS+FLGFKLKV+ 
Sbjct  303  YADDFKIFCATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRK  362

Query  361  kgkkfvvQSHISDKALKNAKEDISKCVADIKRPANEKEQYEAIAKYNATVSGLHNYYQIA  420
            KGKK+VV+SH+SDKA K+A E +S  V  +  +++++ Q+  + KYN+ V+GLH+YY I+
Sbjct  363  KGKKYVVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCIS  422

Query  421  TNVSLDFTKIAFHIKKQMNNRL--DIKTSGTLNKGFIKEKYGKSKQLRFLNGHPLIPVGY  478
            T+VS DF+++AF I+KQ+ NRL  D+   G L +GFIKEKYG S+Q+RFL+G+P++P+GY
Sbjct  423  TEVSHDFSRLAFSINKQLRNRLKGDLSKKGQLRNGFIKEKYGASRQMRFLHGRPVVPLGY  482

Query  479  IRTkdakhkkkvvnkytvkGRAFIHKNLQIDVDTLVWLMKHPVLDKSIEFADNRISLFAA  538
            +++K+A+HK+K +NKYTVKGR  IHKNL ID  T++WLM++PV +++IE+ADNRISL+AA
Sbjct  483  VQSKNAQHKRKSINKYTVKGREQIHKNLAIDTATMLWLMRNPVKGRTIEYADNRISLYAA  542

Query  539  QYGRCGVTGIKLTPNDIHCHHKIPLEQGGTDSYSNLILVTEAVHILIHATKEDTIQKYIK  598
            QYG+C+VTGI + ++DIHCHHK+P+ +GG+D Y+NLILV+ AVHILIHA+ E TI+KY+K
Sbjct  543  QYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLK  602

Query  599  ELGLTNKQIEKCNKLRKMAELPLI  622
             L L NKQIEK NKLR MAE+P I
Sbjct  603  SLNLDNKQIEKLNKLRSMAEMPPI  626

4) Ccel_2751 in NC_011898


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  616 bits (2326),  Expect = 2e-177, Method: Compositional matrix adjust.
 Identities = 349/617 (57%), Positives = 487/617 (79%), Gaps = 3/617 (0%)

Query  2    TKQKKLRHLEYYDLQEYFDNLYAQSKQGKSFTNLMKVISSEENIRLAYRNIKSNSGSHTS  61
            +KQ+K+R+ EYYD++  FD LYA+SK++K+F +LM +I SEENI+LAYR IK N+GS+TS
Sbjct  13   SKQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTS  72

Query  62   GTDTLNIKDIEKLSVEKLVEMMQRKLAWYQPKPVKRVEIPKPNGKTRPLGIPTIVDRLVQ  121
            G D   I D+ KLS E  V +++++++ Y+P PV+RVEIPKPNGKTRPLGIPTIVDR+VQ
Sbjct  73   GVDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQ  132

Query  122  QCILQVLEPICEAKFYERSNGFRPNRSAEHAMAQCYRMVQKQNLYFVVDVDIKGFFDNVN  181
            QCILQV+EPICEAKF E SNGFRPNRSAE A+AQC R++Q Q+LY VVD+DIKGFFDN++
Sbjct  133  QCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNIS  192

Query  182  HSKLIRQMWAMGIRDKQLICIIKQMLKAPVVMPDGETLYPTKGTPQGGILSPLLANIVLN  241
            H+KLIRQ+WA+GIRDK+L+CIIK+MLKAPVV+P+GE  YP++GTPQGGILSPLLANIVLN
Sbjct  193  HTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLN  252

Query  242  ELDWWISSQWEDMLTHREYYVSVNNNGSLNKSGVFRTLRRSALKEMYIVRYADDFKIFCR  301
            ELDWWI+SQWE+M T   +    N +G+  KS  +R+LRRS LKEM  VRYADDFKIFC 
Sbjct  253  ELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCA  312

Query  302  KRSDANKIFVAVKKWLKDRLKLEISEEKSKVVNLKKHYSEFLGFQFKTVRKGRKFVVRSH  361
             + DA + + A   WLKDRL LEIS +KSKVVNLK++YS+FLGF++K  +KG+K+VVRSH
Sbjct  313  THEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSH  372

Query  362  MSEKAIKRETEKLKEQIKEIAHCKIKDEEILQIKRYNAMVIGIHNYYRYATNISIDCMKI  421
            MS+KA K+  EK+ E++K +A     + +++Q+++YN++V G+H+YY  +T++S D  ++
Sbjct  373  MSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRL  432

Query  422  QRLIYRVMFHQLKGQLKRNGSIQRTVINKNYGKSRMLRFIHQEPICPIGYVQTQNPMYKK  481
               I + + ++LKG+L ++G ++   I+ +YG SR +RF+H  P+ P+GYVQ++N+  K+
Sbjct  433  AFSINKQLRNRLKGDLSKKGQLRNGFIKEKYGASRQMRFLHGRPVVPLGYVQSKNAQHKR  492

Query  482  RQVCKYTVEGREEIHKNLKFDESVMAVLHMLAVAYIPSRSIAYMDNRVSLYAAQYGKCAV  541
            + + KYTV GRE+IHKNL +D + M  L ++  + + +R+I Y DNR+SLYAAQYGKCAV
Sbjct  493  KSINKYTVKGREQIHKNLAIDTATM--LWLMRNP-VKGRTIEYADNRISLYAAQYGKCAV  549

Query  542  MGNVLWINEIHCHHKITLSQGGTDEYKNLVIIHIDVHRLIHSVKPDTIQVYLNKLKPNQS  601
             G  +  ++IHCHHK+ +S+GG+DEY NL+++   VH LIH+    TI+ YL+ L+ ++ 
Sbjct  550  TGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLNLDNK  609

Query  602  QLDKINKFRSLAGNPAI  618
            Q++K+NK+RS+A  P+I
Sbjct  610  QIEKLNKLRSMAEMPPI  626

5) EUS_14180 in NC_021011


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  528 bits (1993),  Expect = 4e-151, Method: Compositional matrix adjust.
 Identities = 324/622 (53%), Positives = 455/622 (74%), Gaps = 11/622 (1%)

Query  15   LRHAEYYDMQSTFDELYARSQAGEIFDGLMDVILSRENILLAYRNIKSNTGSFTPGTDKL  74
            +R++EYYDM++TFD LYA S+ +  F+ LM++I S ENI LAYR IK NTGS T+G DK 
Sbjct  18   IRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDKR  77

Query  75   KISDIGKLTADEVTARVRRIVKGGKNGYTPRSVRRKEIPKPNGSTRPLGIPCIWDRLVQQ  134
             I+D++KL+ +E      R+++   + Y P +VRR EIPKPNG TRPLGIP I DR+VQQ
Sbjct  78   TIADLAKLSEEEYV----RLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQ  133

Query  135  CIKQVMEPICEARFSNNSYGFRPNRSVENAIAAIYRLMQRSGLYYVVEFDIKGFFDNVDH  194
            CI QVMEPICEA+FS+NS GFRPNRS E AIA   RL+Q   LY VV++DIKGFFDN+ H
Sbjct  134  CILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISH  193

Query  195  SKLIKQLWSLNIRDKELLYVIRRILKAPILMPDGHIEHPAKGTPQGGIISPLLANVVLNE  254
            +KLI+Q+W+L IRDK LL +I+ +LKAP+++P+G+   PA+GTPQGGI+SPLLAN+VLNE
Sbjct  194  TKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLNE  253

Query  255  LDHWIESQWQCNPVTENYSYRENATGCPIQSHAYRAMRNTRLKEMYIVRYADDFRILCRT  314
            LD WI SQW+  P   ++  R NA G  I+SHAYRA+R +RLKEM  VRYADDF+I+C T
Sbjct  254  LDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCAT  313

Query  315  KEQADRTLIAVTHWLKERLRLDVSPEKTRVVDTRRSYSEFLGFKIRLHKKGKKYVVQSHM  374
             E+A R+  A   WLK+RL L++SP+K++VV+ +R YS+FLGFK++++KKGKKYVV+SHM
Sbjct  314  HEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHM  373

Query  375  CDKAYRKVKANLTKQVGNIKFPRKDRGEAGEVRLFNSMVMGIQNYYQLATDISIDCGDIG  434
             DKAY+K   +++ +V ++ ++  D ++  +++ +NS+V G+++YY ++T++S D + ++
Sbjct  374  SDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLA  433

Query  435  RTVNIVLKNRLKSGKTHRLKEEGRDLTKMELQRYGKSEQLRYIAQSKEPIYPISYVQCTN  494
             ++N  L+NRLK++    L   G+       ++YG S Q+R++     P+ P++YVQ  N
Sbjct  434  FSINKQLRNRLKGD----LSKKGQLRNGFIKEKYGASRQMRFLHGR--PVVPLGYVQSKN  487

Query  495  PMNLRRKVCAYTATGRSAIHDDLRINTSLLLQLMRAPTYRRSAEYADNRISLFSAQWGKC  554
            + + R+ +  YT  GR  IH +L I+T+ +L LMR P   R+ EYADNRISL++AQ GKC
Sbjct  488  AQHKRKSINKYTVKGREQIHKNLAIDTATMLWLMRNPVKGRTIEYADNRISLYAAQYGKC  547

Query  555  AITGKEFQCVSEIHCHHKTPKGNGGSDKYENLVLVLAPVHELIHAVNEDTICSYLSALKL  614
            A+TG   +   +IHCHHK P +NGGSD Y NL+LV  +VH LIHA +E TI  YL +L+L
Sbjct  548  AVTGIPMNS-HDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLNL  606

Query  615  DASQLMKLNRLRILANRKPIDL  636
            D  Q+ KLN+LR +A+  PI L
Sbjct  607  DNKQIEKLNKLRSMAEMPPIIL  628

6) SAIL_7240 in NC_021507


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  504 bits (1900),  Expect = 8e-144, Method: Compositional matrix adjust.
 Identities = 314/624 (51%), Positives = 451/624 (73%), Gaps = 15/624 (2%)

Query  14   LRHAEYYEMQNTFDDLYAKSKNGDIFTHLMDIILSRENILLAYRNIKANAGSKTAGTDGT  73
            +R++EYY+M+ TFD LYA SK++  F HLM+II S ENI LAYR IK N+GS T+G D  
Sbjct  18   IRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDKR  77

Query  74   IIKDIGKLPAETVVKKVRYIVAGTPHGYRPKPVRRKEIPKPNGKTRPLGIPCMWDRLIQQ  133
             I D++KL+ E  V+ +R   +     Y+P PVRR EIPKPNGKTRPLGIP + DR++QQ
Sbjct  78   TIADLAKLSEEEYVRLIRKQFSN----YHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQ  133

Query  134  CIKQVLEPICEAKFSENSYGFRPNRSVENAIKATYNRLQISQLHYVIEFDIKGFFDNVNH  193
            CI QV+EPICEAKFSENS GFRPNRS E AI      +Q+ +L  V+++DIKGFFDN++H
Sbjct  134  CILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISH  193

Query  194  SKLIKQIWAMGIRDKHLIFILKRILKAPIKMPDGTITYPEKGTPQGGIISPLLANIVLNE  253
            +KLI+QIWA+GIRDK L+ I+K +LKAP+ +P+G  TYP +GTPQGGI+SPLLANIVLNE
Sbjct  194  TKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLNE  253

Query  254  LDHWVESQWHENPVTKNYVVHINKSGSPCKSNAYKEMKKTKLKEMYMVRYADDFRVFCRY  313
            LD W+ SQW+E P   ++  + N  G+  KS+AY+ +++++LKEM  VRYADDF++FC  
Sbjct  254  LDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCAT  313

Query  314  KESAEKTKIAITQWIEQRLKLEVSQEKTRIVNVRKRYSDFLGFKIKMIPRRKKLVVKSHI  373
             E A ++  A   W+ +RL LE+S +K+++VN++++YSDFLGFK+K+  + KK VV+SH+
Sbjct  314  HEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHM  373

Query  374  SDKQFKTQKDKLVSQAKKIASPSKGKTELEEIRLYNSMVLGMQNYYQIATNVNLDCMKLN  433
            SDK +K   +K+  + KK+A +S +++++ +++ YNS+V G+++YY I+T+V+ D  +L 
Sbjct  374  SDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLA  433

Query  434  RAVMAIFTNRLGA--SKKGRLRKTGRQLTTKEATRYGKSKMLRYVAGEGEPIFPVGYIQH  491
             ++   + NRL +  SKKG+LR+       KE  +YG S+ +R++  +G P+ P+GY+Q 
Sbjct  434  FSINKQLRNRLKGDLSKKGQLRNG----FIKE--KYGASRQMRFL--HGRPVVPLGYVQS  485

Query  492  RKPMAKVYSANCYTPEGRKFIHTNLSVDKLLMYQLMKLSLENRTIEYADNRISLFSAQHG  551
            +++  K  S N YT  GR  IH NL++D   M  LM+ ++  RTIEYADNRISL++AQ G
Sbjct  486  KNAQHKRKSINKYTVKGREQIHKNLAIDTATMLWLMRNPVKGRTIEYADNRISLYAAQYG  545

Query  552  KCAITLEEFQQANEIHCHHIVPTRAGGNDDYKNLILVKEAVHRLIHAKTEETIQKYIALL  611
            KCA+T     ++++IHCHH VP   GG+D+Y NLILV  AVH LIHA +E TI+KY+  L
Sbjct  546  KCAVTGIPM-NSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSL  604

Query  612  KLNKVQLIRLNKYRVLAGNQELNL  635
            +L++ Q+ +LNK R +A    + L
Sbjct  605  NLDNKQIEKLNKLRSMAEMPPIIL  628

7) EFAU004_01857 in NC_017022


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  501 bits (1891),  Expect = 5e-143, Method: Compositional matrix adjust.
 Identities = 310/622 (50%), Positives = 446/622 (72%), Gaps = 11/622 (1%)

Query  14   LRHAEYYEMQNTFDDLYAKSKNGDIFTHLMDIILSRENILLAYRNIKANAGSKTAGTDGT  73
            +R++EYY+M+ TFD LYA SK++  F HLM+II S ENI LAYR IK N+GS T+G D  
Sbjct  18   IRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDKR  77

Query  74   IIKDIGKLPAETVVKKVRYIVAGSPHGYRPKPVRRKEIPKPNGKTRPLGIPCMWDRLIQQ  133
             I D++KL+ E  V+ +R   +     Y+P PVRR EIPKPNGKTRPLGIP + DR++QQ
Sbjct  78   TIADLAKLSEEEYVRLIRKQFSN----YHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQ  133

Query  134  CIKQVLEPICEAKFSENSYGFRPNRSVENAIKATYNRLQISQLHYVIEFDIKGFFDNVNH  193
            CI QV+EPICEAKFSENS GFRPNRS E AI      +Q+ +L  V+++DIKGFFDN++H
Sbjct  134  CILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISH  193

Query  194  SKLIKQIWAMGIRDKHLIFILKRILKAPIKMTNGTITYPEKGTPQGGIISPLLANIVLNE  253
            +KLI+QIWA+GIRDK L+ I+K +LKAP+ + NG  TYP +GTPQGGI+SPLLANIVLNE
Sbjct  194  TKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLNE  253

Query  254  LDHWVESQWQENPVTKNYVVHINKSGSPCKSNAYKEMKKTKLKEMYMVRYADDFRVFCRY  313
            LD W+ SQW+E P   ++  + N  G+  KS+AY+ +++++LKEM  VRYADDF++FC  
Sbjct  254  LDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCAT  313

Query  314  KESAEKAKIAITQWIEQRLKLEVSQEKTRIVNVRKRYSDFLGFKIKMIPRRKKLVVKSHI  373
             E A +A  A   W+ +RL LE+S +K+++VN++++YSDFLGFK+K+  + KK VV+SH+
Sbjct  314  HEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHM  373

Query  374  SDKQFKNQKDKLVSQAKKIASPSKGKTELEETRLYNSMVLGMQNYYQIATNVNLDCMKLN  433
            SDK +K+  +K+  + KK+A +S +++++ + + YNS+V G+++YY I+T+V+ D  +L 
Sbjct  374  SDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLA  433

Query  434  RAVMAIFTNRLGTNKRGRLRKTGRQLTTKEATRYGKSKMLRYVAGEGEPIFPVGYIQHRK  493
             ++   + NRL    +G L K G+        +YG S+ +R++  +G P+ P+GY+Q ++
Sbjct  434  FSINKQLRNRL----KGDLSKKGQLRNGFIKEKYGASRQMRFL--HGRPVVPLGYVQSKN  487

Query  494  PMAKVYLANCYTLEGRKFIHTNLSVDKLLMYQLMKLSLENRTIEYADNRISLFSAQHGKC  553
            +  K    N YT+ GR  IH NL++D   M  LM+ ++  RTIEYADNRISL++AQ GKC
Sbjct  488  AQHKRKSINKYTVKGREQIHKNLAIDTATMLWLMRNPVKGRTIEYADNRISLYAAQYGKC  547

Query  554  AITLEEFQQANEIHCHHIVPTGAGGNDDYKNLILVKEAVHRLIHAKTEETIQKYIALLKL  613
            A+T     ++++IHCHH VP + GG+D+Y NLILV  AVH LIHA +E TI+KY+  L+L
Sbjct  548  AVTGIPM-NSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLNL  606

Query  614  NKVQLIRLNKYRVLAGNQELNL  635
            ++ Q+ +LNK R +A    + L
Sbjct  607  DNKQIEKLNKLRSMAEMPPIIL  628

8) EFAU004_02738 in NC_017022


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  501 bits (1891),  Expect = 5e-143, Method: Compositional matrix adjust.
 Identities = 310/622 (50%), Positives = 446/622 (72%), Gaps = 11/622 (1%)

Query  14   LRHAEYYEMQNTFDDLYAKSKNGDIFTHLMDIILSRENILLAYRNIKANAGSKTAGTDGT  73
            +R++EYY+M+ TFD LYA SK++  F HLM+II S ENI LAYR IK N+GS T+G D  
Sbjct  18   IRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDKR  77

Query  74   IIKDIGKLPAETVVKKVRYIVAGSPHGYRPKPVRRKEIPKPNGKTRPLGIPCMWDRLIQQ  133
             I D++KL+ E  V+ +R   +     Y+P PVRR EIPKPNGKTRPLGIP + DR++QQ
Sbjct  78   TIADLAKLSEEEYVRLIRKQFSN----YHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQ  133

Query  134  CIKQVLEPICEAKFSENSYGFRPNRSVENAIKATYNRLQISQLHYVIEFDIKGFFDNVNH  193
            CI QV+EPICEAKFSENS GFRPNRS E AI      +Q+ +L  V+++DIKGFFDN++H
Sbjct  134  CILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISH  193

Query  194  SKLIKQIWAMGIRDKHLIFILKRILKAPIKMTNGTITYPEKGTPQGGIISPLLANIVLNE  253
            +KLI+QIWA+GIRDK L+ I+K +LKAP+ + NG  TYP +GTPQGGI+SPLLANIVLNE
Sbjct  194  TKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLNE  253

Query  254  LDHWVESQWQENPVTKNYVVHINKSGSPCKSNAYKEMKKTKLKEMYMVRYADDFRVFCRY  313
            LD W+ SQW+E P   ++  + N  G+  KS+AY+ +++++LKEM  VRYADDF++FC  
Sbjct  254  LDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCAT  313

Query  314  KESAEKAKIAITQWIEQRLKLEVSQEKTRIVNVRKRYSDFLGFKIKMIPRRKKLVVKSHI  373
             E A +A  A   W+ +RL LE+S +K+++VN++++YSDFLGFK+K+  + KK VV+SH+
Sbjct  314  HEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHM  373

Query  374  SDKQFKNQKDKLVSQAKKIASPSKGKTELEETRLYNSMVLGMQNYYQIATNVNLDCMKLN  433
            SDK +K+  +K+  + KK+A +S +++++ + + YNS+V G+++YY I+T+V+ D  +L 
Sbjct  374  SDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLA  433

Query  434  RAVMAIFTNRLGTNKRGRLRKTGRQLTTKEATRYGKSKMLRYVAGEGEPIFPVGYIQHRK  493
             ++   + NRL    +G L K G+        +YG S+ +R++  +G P+ P+GY+Q ++
Sbjct  434  FSINKQLRNRL----KGDLSKKGQLRNGFIKEKYGASRQMRFL--HGRPVVPLGYVQSKN  487

Query  494  PMAKVYLANCYTLEGRKFIHTNLSVDKLLMYQLMKLSLENRTIEYADNRISLFSAQHGKC  553
            +  K    N YT+ GR  IH NL++D   M  LM+ ++  RTIEYADNRISL++AQ GKC
Sbjct  488  AQHKRKSINKYTVKGREQIHKNLAIDTATMLWLMRNPVKGRTIEYADNRISLYAAQYGKC  547

Query  554  AITLEEFQQANEIHCHHIVPTGAGGNDDYKNLILVKEAVHRLIHAKTEETIQKYIALLKL  613
            A+T     ++++IHCHH VP + GG+D+Y NLILV  AVH LIHA +E TI+KY+  L+L
Sbjct  548  AVTGIPM-NSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLNL  606

Query  614  NKVQLIRLNKYRVLAGNQELNL  635
            ++ Q+ +LNK R +A    + L
Sbjct  607  DNKQIEKLNKLRSMAEMPPIIL  628

9) EFAU085_00528 in NC_021994


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  501 bits (1891),  Expect = 5e-143, Method: Compositional matrix adjust.
 Identities = 310/622 (50%), Positives = 446/622 (72%), Gaps = 11/622 (1%)

Query  14   LRHAEYYEMQNTFDDLYAKSKNGDIFTHLMDIILSRENILLAYRNIKANAGSKTAGTDGT  73
            +R++EYY+M+ TFD LYA SK++  F HLM+II S ENI LAYR IK N+GS T+G D  
Sbjct  18   IRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDKR  77

Query  74   IIKDIGKLPAETVVKKVRYIVAGSPHGYRPKPVRRKEIPKPNGKTRPLGIPCMWDRLIQQ  133
             I D++KL+ E  V+ +R   +     Y+P PVRR EIPKPNGKTRPLGIP + DR++QQ
Sbjct  78   TIADLAKLSEEEYVRLIRKQFSN----YHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQ  133

Query  134  CIKQVLEPICEAKFSENSYGFRPNRSVENAIKATYNRLQISQLHYVIEFDIKGFFDNVNH  193
            CI QV+EPICEAKFSENS GFRPNRS E AI      +Q+ +L  V+++DIKGFFDN++H
Sbjct  134  CILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISH  193

Query  194  SKLIKQIWAMGIRDKHLIFILKRILKAPIKMTNGTITYPEKGTPQGGIISPLLANIVLNE  253
            +KLI+QIWA+GIRDK L+ I+K +LKAP+ + NG  TYP +GTPQGGI+SPLLANIVLNE
Sbjct  194  TKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLNE  253

Query  254  LDHWVESQWQENPVTKNYVVHINKSGSPCKSNAYKEMKKTKLKEMYMVRYADDFRVFCRY  313
            LD W+ SQW+E P   ++  + N  G+  KS+AY+ +++++LKEM  VRYADDF++FC  
Sbjct  254  LDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCAT  313

Query  314  KESAEKAKIAITQWIEQRLKLEVSQEKTRIVNVRKRYSDFLGFKIKMIPRRKKLVVKSHI  373
             E A +A  A   W+ +RL LE+S +K+++VN++++YSDFLGFK+K+  + KK VV+SH+
Sbjct  314  HEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHM  373

Query  374  SDKQFKNQKDKLVSQAKKIASPSKGKTELEETRLYNSMVLGMQNYYQIATNVNLDCMKLN  433
            SDK +K+  +K+  + KK+A +S +++++ + + YNS+V G+++YY I+T+V+ D  +L 
Sbjct  374  SDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLA  433

Query  434  RAVMAIFTNRLGTNKRGRLRKTGRQLTTKEATRYGKSKMLRYVAGEGEPIFPVGYIQHRK  493
             ++   + NRL    +G L K G+        +YG S+ +R++  +G P+ P+GY+Q ++
Sbjct  434  FSINKQLRNRL----KGDLSKKGQLRNGFIKEKYGASRQMRFL--HGRPVVPLGYVQSKN  487

Query  494  PMAKVYLANCYTLEGRKFIHTNLSVDKLLMYQLMKLSLENRTIEYADNRISLFSAQHGKC  553
            +  K    N YT+ GR  IH NL++D   M  LM+ ++  RTIEYADNRISL++AQ GKC
Sbjct  488  AQHKRKSINKYTVKGREQIHKNLAIDTATMLWLMRNPVKGRTIEYADNRISLYAAQYGKC  547

Query  554  AITLEEFQQANEIHCHHIVPTGAGGNDDYKNLILVKEAVHRLIHAKTEETIQKYIALLKL  613
            A+T     ++++IHCHH VP + GG+D+Y NLILV  AVH LIHA +E TI+KY+  L+L
Sbjct  548  AVTGIPM-NSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLNL  606

Query  614  NKVQLIRLNKYRVLAGNQELNL  635
            ++ Q+ +LNK R +A    + L
Sbjct  607  DNKQIEKLNKLRSMAEMPPIIL  628

10) EFAU085_02802 in NC_021994


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  501 bits (1891),  Expect = 5e-143, Method: Compositional matrix adjust.
 Identities = 310/622 (50%), Positives = 446/622 (72%), Gaps = 11/622 (1%)

Query  14   LRHAEYYEMQNTFDDLYAKSKNGDIFTHLMDIILSRENILLAYRNIKANAGSKTAGTDGT  73
            +R++EYY+M+ TFD LYA SK++  F HLM+II S ENI LAYR IK N+GS T+G D  
Sbjct  18   IRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDKR  77

Query  74   IIKDIGKLPAETVVKKVRYIVAGSPHGYRPKPVRRKEIPKPNGKTRPLGIPCMWDRLIQQ  133
             I D++KL+ E  V+ +R   +     Y+P PVRR EIPKPNGKTRPLGIP + DR++QQ
Sbjct  78   TIADLAKLSEEEYVRLIRKQFSN----YHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQ  133

Query  134  CIKQVLEPICEAKFSENSYGFRPNRSVENAIKATYNRLQISQLHYVIEFDIKGFFDNVNH  193
            CI QV+EPICEAKFSENS GFRPNRS E AI      +Q+ +L  V+++DIKGFFDN++H
Sbjct  134  CILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISH  193

Query  194  SKLIKQIWAMGIRDKHLIFILKRILKAPIKMTNGTITYPEKGTPQGGIISPLLANIVLNE  253
            +KLI+QIWA+GIRDK L+ I+K +LKAP+ + NG  TYP +GTPQGGI+SPLLANIVLNE
Sbjct  194  TKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLNE  253

Query  254  LDHWVESQWQENPVTKNYVVHINKSGSPCKSNAYKEMKKTKLKEMYMVRYADDFRVFCRY  313
            LD W+ SQW+E P   ++  + N  G+  KS+AY+ +++++LKEM  VRYADDF++FC  
Sbjct  254  LDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCAT  313

Query  314  KESAEKAKIAITQWIEQRLKLEVSQEKTRIVNVRKRYSDFLGFKIKMIPRRKKLVVKSHI  373
             E A +A  A   W+ +RL LE+S +K+++VN++++YSDFLGFK+K+  + KK VV+SH+
Sbjct  314  HEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHM  373

Query  374  SDKQFKNQKDKLVSQAKKIASPSKGKTELEETRLYNSMVLGMQNYYQIATNVNLDCMKLN  433
            SDK +K+  +K+  + KK+A +S +++++ + + YNS+V G+++YY I+T+V+ D  +L 
Sbjct  374  SDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLA  433

Query  434  RAVMAIFTNRLGTNKRGRLRKTGRQLTTKEATRYGKSKMLRYVAGEGEPIFPVGYIQHRK  493
             ++   + NRL    +G L K G+        +YG S+ +R++  +G P+ P+GY+Q ++
Sbjct  434  FSINKQLRNRL----KGDLSKKGQLRNGFIKEKYGASRQMRFL--HGRPVVPLGYVQSKN  487

Query  494  PMAKVYLANCYTLEGRKFIHTNLSVDKLLMYQLMKLSLENRTIEYADNRISLFSAQHGKC  553
            +  K    N YT+ GR  IH NL++D   M  LM+ ++  RTIEYADNRISL++AQ GKC
Sbjct  488  AQHKRKSINKYTVKGREQIHKNLAIDTATMLWLMRNPVKGRTIEYADNRISLYAAQYGKC  547

Query  554  AITLEEFQQANEIHCHHIVPTGAGGNDDYKNLILVKEAVHRLIHAKTEETIQKYIALLKL  613
            A+T     ++++IHCHH VP + GG+D+Y NLILV  AVH LIHA +E TI+KY+  L+L
Sbjct  548  AVTGIPM-NSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLNL  606

Query  614  NKVQLIRLNKYRVLAGNQELNL  635
            ++ Q+ +LNK R +A    + L
Sbjct  607  DNKQIEKLNKLRSMAEMPPIIL  628

11) HMPREF0351_11819 in NC_017960


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  501 bits (1891),  Expect = 5e-143, Method: Compositional matrix adjust.
 Identities = 310/622 (50%), Positives = 446/622 (72%), Gaps = 11/622 (1%)

Query  14   LRHAEYYEMQNTFDDLYAKSKNGDIFTHLMDIILSRENILLAYRNIKANAGSKTAGTDGT  73
            +R++EYY+M+ TFD LYA SK++  F HLM+II S ENI LAYR IK N+GS T+G D  
Sbjct  18   IRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDKR  77

Query  74   IIKDIGKLPAETVVKKVRYIVAGSPHGYRPKPVRRKEIPKPNGKTRPLGIPCMWDRLIQQ  133
             I D++KL+ E  V+ +R   +     Y+P PVRR EIPKPNGKTRPLGIP + DR++QQ
Sbjct  78   TIADLAKLSEEEYVRLIRKQFSN----YHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQ  133

Query  134  CIKQVLEPICEAKFSENSYGFRPNRSVENAIKATYNRLQISQLHYVIEFDIKGFFDNVNH  193
            CI QV+EPICEAKFSENS GFRPNRS E AI      +Q+ +L  V+++DIKGFFDN++H
Sbjct  134  CILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISH  193

Query  194  SKLIKQIWAMGIRDKHLIFILKRILKAPIKMTNGTITYPEKGTPQGGIISPLLANIVLNE  253
            +KLI+QIWA+GIRDK L+ I+K +LKAP+ + NG  TYP +GTPQGGI+SPLLANIVLNE
Sbjct  194  TKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLNE  253

Query  254  LDHWVESQWQENPVTKNYVVHINKSGSPCKSNAYKEMKKTKLKEMYMVRYADDFRVFCRY  313
            LD W+ SQW+E P   ++  + N  G+  KS+AY+ +++++LKEM  VRYADDF++FC  
Sbjct  254  LDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCAT  313

Query  314  KESAEKAKIAITQWIEQRLKLEVSQEKTRIVNVRKRYSDFLGFKIKMIPRRKKLVVKSHI  373
             E A +A  A   W+ +RL LE+S +K+++VN++++YSDFLGFK+K+  + KK VV+SH+
Sbjct  314  HEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHM  373

Query  374  SDKQFKNQKDKLVSQAKKIASPSKGKTELEETRLYNSMVLGMQNYYQIATNVNLDCMKLN  433
            SDK +K+  +K+  + KK+A +S +++++ + + YNS+V G+++YY I+T+V+ D  +L 
Sbjct  374  SDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLA  433

Query  434  RAVMAIFTNRLGTNKRGRLRKTGRQLTTKEATRYGKSKMLRYVAGEGEPIFPVGYIQHRK  493
             ++   + NRL    +G L K G+        +YG S+ +R++  +G P+ P+GY+Q ++
Sbjct  434  FSINKQLRNRL----KGDLSKKGQLRNGFIKEKYGASRQMRFL--HGRPVVPLGYVQSKN  487

Query  494  PMAKVYLANCYTLEGRKFIHTNLSVDKLLMYQLMKLSLENRTIEYADNRISLFSAQHGKC  553
            +  K    N YT+ GR  IH NL++D   M  LM+ ++  RTIEYADNRISL++AQ GKC
Sbjct  488  AQHKRKSINKYTVKGREQIHKNLAIDTATMLWLMRNPVKGRTIEYADNRISLYAAQYGKC  547

Query  554  AITLEEFQQANEIHCHHIVPTGAGGNDDYKNLILVKEAVHRLIHAKTEETIQKYIALLKL  613
            A+T     ++++IHCHH VP + GG+D+Y NLILV  AVH LIHA +E TI+KY+  L+L
Sbjct  548  AVTGIPM-NSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLNL  606

Query  614  NKVQLIRLNKYRVLAGNQELNL  635
            ++ Q+ +LNK R +A    + L
Sbjct  607  DNKQIEKLNKLRSMAEMPPIIL  628

12) HMPREF0351_12739 in NC_017961


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  501 bits (1891),  Expect = 5e-143, Method: Compositional matrix adjust.
 Identities = 310/622 (50%), Positives = 446/622 (72%), Gaps = 11/622 (1%)

Query  14   LRHAEYYEMQNTFDDLYAKSKNGDIFTHLMDIILSRENILLAYRNIKANAGSKTAGTDGT  73
            +R++EYY+M+ TFD LYA SK++  F HLM+II S ENI LAYR IK N+GS T+G D  
Sbjct  18   IRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDKR  77

Query  74   IIKDIGKLPAETVVKKVRYIVAGSPHGYRPKPVRRKEIPKPNGKTRPLGIPCMWDRLIQQ  133
             I D++KL+ E  V+ +R   +     Y+P PVRR EIPKPNGKTRPLGIP + DR++QQ
Sbjct  78   TIADLAKLSEEEYVRLIRKQFSN----YHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQ  133

Query  134  CIKQVLEPICEAKFSENSYGFRPNRSVENAIKATYNRLQISQLHYVIEFDIKGFFDNVNH  193
            CI QV+EPICEAKFSENS GFRPNRS E AI      +Q+ +L  V+++DIKGFFDN++H
Sbjct  134  CILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISH  193

Query  194  SKLIKQIWAMGIRDKHLIFILKRILKAPIKMTNGTITYPEKGTPQGGIISPLLANIVLNE  253
            +KLI+QIWA+GIRDK L+ I+K +LKAP+ + NG  TYP +GTPQGGI+SPLLANIVLNE
Sbjct  194  TKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLNE  253

Query  254  LDHWVESQWQENPVTKNYVVHINKSGSPCKSNAYKEMKKTKLKEMYMVRYADDFRVFCRY  313
            LD W+ SQW+E P   ++  + N  G+  KS+AY+ +++++LKEM  VRYADDF++FC  
Sbjct  254  LDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCAT  313

Query  314  KESAEKAKIAITQWIEQRLKLEVSQEKTRIVNVRKRYSDFLGFKIKMIPRRKKLVVKSHI  373
             E A +A  A   W+ +RL LE+S +K+++VN++++YSDFLGFK+K+  + KK VV+SH+
Sbjct  314  HEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHM  373

Query  374  SDKQFKNQKDKLVSQAKKIASPSKGKTELEETRLYNSMVLGMQNYYQIATNVNLDCMKLN  433
            SDK +K+  +K+  + KK+A +S +++++ + + YNS+V G+++YY I+T+V+ D  +L 
Sbjct  374  SDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLA  433

Query  434  RAVMAIFTNRLGTNKRGRLRKTGRQLTTKEATRYGKSKMLRYVAGEGEPIFPVGYIQHRK  493
             ++   + NRL    +G L K G+        +YG S+ +R++  +G P+ P+GY+Q ++
Sbjct  434  FSINKQLRNRL----KGDLSKKGQLRNGFIKEKYGASRQMRFL--HGRPVVPLGYVQSKN  487

Query  494  PMAKVYLANCYTLEGRKFIHTNLSVDKLLMYQLMKLSLENRTIEYADNRISLFSAQHGKC  553
            +  K    N YT+ GR  IH NL++D   M  LM+ ++  RTIEYADNRISL++AQ GKC
Sbjct  488  AQHKRKSINKYTVKGREQIHKNLAIDTATMLWLMRNPVKGRTIEYADNRISLYAAQYGKC  547

Query  554  AITLEEFQQANEIHCHHIVPTGAGGNDDYKNLILVKEAVHRLIHAKTEETIQKYIALLKL  613
            A+T     ++++IHCHH VP + GG+D+Y NLILV  AVH LIHA +E TI+KY+  L+L
Sbjct  548  AVTGIPM-NSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLNL  606

Query  614  NKVQLIRLNKYRVLAGNQELNL  635
            ++ Q+ +LNK R +A    + L
Sbjct  607  DNKQIEKLNKLRSMAEMPPIIL  628

13) BCAH187_C0016 in NC_011655


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  491 bits (1850),  Expect = 8e-140, Method: Compositional matrix adjust.
 Identities = 299/635 (48%), Positives = 442/635 (70%), Gaps = 20/635 (3%)

Query  9    PKNKKLRHNEYYGIQTFLDNLYQKATKKNSFKNLMPIIISDENILLAFRNIKGNKGSKTA  68
            +K++K+R++EYY+++  +D LY  + K ++F++LM II S+ENI LA+R IK N GS T+
Sbjct  13   SKQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTS  72

Query  69   ACDNVNIKDIERMEQSYFLNEVKRRFQNYQPQKVRRKEIPKPNGKTRPLGIPSMWDRIIQ  128
            + D+  I D+ ++ +  ++  ++++F NY+P  VRR EIPKPNGKTRPLGIP++ DRI+Q
Sbjct  73   GVDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQ  132

Query  129  QCILQVMEPICEAHFCNRSHGFRPNRSAENAIADATKRVNQQNLTYVVDIDIQGFFDEVS  188
            QCILQVMEPICEA F + S+GFRPNRSAE AIA+  + ++ Q+L  VVD+DI+GFFD++S
Sbjct  133  QCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNIS  192

Query  189  HVKLMRQLWTLGIRDKQLLVIIRKILKAPVQLPNGKTIFPTKGTPQGGILSPLLANVNLN  248
            H KL+RQ+W+LGIRDK+LL II+ +LKAPV LPNG   +P++GTPQGGILSPLLAN+ LN
Sbjct  193  HTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLN  252

Query  249  EFDWWISNQWETFKAK-KVKPRLKDGIWSNDTVTYCLSKTSKMKPMYIVRYADDFKIFTN  307
            E+DWWI++QWE   +K K K R +       + +Y   + S++K M  VRYADDFKIF  
Sbjct  253  ELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCA  312

Query  308  TRRNAEKIFEATQMWLEERLKLPISTEKSKVTNLKKQQSEFLGFTLKAVKKGKKNGNTRY  367
            T+ +A + + AT++WL +RL L IS +KSKV NLK+Q S+FLGF         ++   +Y
Sbjct  313  THEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFK-----LKVRKKGKKY  367

Query  368  IAVTHISPKALEKTKQDLAKQVKRIQRTPNSNETIKRISIYNSMVIGKHNYYKIATHASL  427
            +  +H+S KA  K+ + ++ +VK++  +++ N  + ++  YNS+V G H+YY I+T+ S 
Sbjct  368  VVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSH  427

Query  428  DFSKMNHSLGHMMYNRFPKSKIRGKSNTNGYTNIGKYKGKDRGIKPYLKSKAMRFLMKCP  487
            DFS++  S+   +     +++++G  + +G    G  K K      Y  S+ MRFL   P
Sbjct  428  DFSRLAFSINKQL-----RNRLKGDLSKKGQLRNGFIKEK------YGASRQMRFLHGRP  476

Query  488  ILPISYIQHKKPMMKKQSINRYTAEGRALIHKNLAEITEAELKWLRENPVINERATIEYN  547
            ++P++Y+Q K++  K++SIN+YT  GR  IHKNLA I  A + WL  NPV + R TIEY 
Sbjct  477  VVPLGYVQSKNAQHKRKSINKYTVKGREQIHKNLA-IDTATMLWLMRNPV-KGR-TIEYA  533

Query  548  DNRISLYIAQKGRCSVTGEKLSPWDIHCHHKRLWSETRDDSYKNLTIIKPSVHTLIHATN  607
            DNRISLY AQ G+C+VTG  +++ DIHCHHK   S+   D Y NL ++  +VH LIHA++
Sbjct  534  DNRISLYAAQYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASS  593

Query  608  IETINQFLNKLKLNEEQLGKLNKLRKLVKNEEICM  642
              TI+++L+ L+L++ Q+ KLNKLR +     I +
Sbjct  594  EPTIEKYLKSLNLDNKQIEKLNKLRSMAEMPPIIL  628

14) BCAH187_A3699 in NC_011658


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  491 bits (1850),  Expect = 8e-140, Method: Compositional matrix adjust.
 Identities = 299/635 (48%), Positives = 442/635 (70%), Gaps = 20/635 (3%)

Query  9    PKNKKLRHNEYYGIQTFLDNLYQKATKKNSFKNLMPIIISDENILLAFRNIKGNKGSKTA  68
            +K++K+R++EYY+++  +D LY  + K ++F++LM II S+ENI LA+R IK N GS T+
Sbjct  13   SKQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTS  72

Query  69   ACDNVNIKDIERMEQSYFLNEVKRRFQNYQPQKVRRKEIPKPNGKTRPLGIPSMWDRIIQ  128
            + D+  I D+ ++ +  ++  ++++F NY+P  VRR EIPKPNGKTRPLGIP++ DRI+Q
Sbjct  73   GVDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQ  132

Query  129  QCILQVMEPICEAHFCNRSHGFRPNRSAENAIADATKRVNQQNLTYVVDIDIQGFFDEVS  188
            QCILQVMEPICEA F + S+GFRPNRSAE AIA+  + ++ Q+L  VVD+DI+GFFD++S
Sbjct  133  QCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNIS  192

Query  189  HVKLMRQLWTLGIRDKQLLVIIRKILKAPVQLPNGKTIFPTKGTPQGGILSPLLANVNLN  248
            H KL+RQ+W+LGIRDK+LL II+ +LKAPV LPNG   +P++GTPQGGILSPLLAN+ LN
Sbjct  193  HTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLN  252

Query  249  EFDWWISNQWETFKAK-KVKPRLKDGIWSNDTVTYCLSKTSKMKPMYIVRYADDFKIFTN  307
            E+DWWI++QWE   +K K K R +       + +Y   + S++K M  VRYADDFKIF  
Sbjct  253  ELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCA  312

Query  308  TRRNAEKIFEATQMWLEERLKLPISTEKSKVTNLKKQQSEFLGFTLKAVKKGKKNGNTRY  367
            T+ +A + + AT++WL +RL L IS +KSKV NLK+Q S+FLGF         ++   +Y
Sbjct  313  THEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFK-----LKVRKKGKKY  367

Query  368  IAVTHISPKALEKTKQDLAKQVKRIQRTPNSNETIKRISIYNSMVIGKHNYYKIATHASL  427
            +  +H+S KA  K+ + ++ +VK++  +++ N  + ++  YNS+V G H+YY I+T+ S 
Sbjct  368  VVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSH  427

Query  428  DFSKMNHSLGHMMYNRFPKSKIRGKSNTNGYTNIGKYKGKDRGIKPYLKSKAMRFLMKCP  487
            DFS++  S+   +     +++++G  + +G    G  K K      Y  S+ MRFL   P
Sbjct  428  DFSRLAFSINKQL-----RNRLKGDLSKKGQLRNGFIKEK------YGASRQMRFLHGRP  476

Query  488  ILPISYIQHKKPMMKKQSINRYTAEGRALIHKNLAEITEAELKWLRENPVINERATIEYN  547
            ++P++Y+Q K++  K++SIN+YT  GR  IHKNLA I  A + WL  NPV + R TIEY 
Sbjct  477  VVPLGYVQSKNAQHKRKSINKYTVKGREQIHKNLA-IDTATMLWLMRNPV-KGR-TIEYA  533

Query  548  DNRISLYIAQKGRCSVTGEKLSPWDIHCHHKRLWSETRDDSYKNLTIIKPSVHTLIHATN  607
            DNRISLY AQ G+C+VTG  +++ DIHCHHK   S+   D Y NL ++  +VH LIHA++
Sbjct  534  DNRISLYAAQYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASS  593

Query  608  IETINQFLNKLKLNEEQLGKLNKLRKLVKNEEICM  642
              TI+++L+ L+L++ Q+ KLNKLR +     I +
Sbjct  594  EPTIEKYLKSLNLDNKQIEKLNKLRSMAEMPPIIL  628

15) BCAH820_3675 in NC_011773


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  491 bits (1850),  Expect = 8e-140, Method: Compositional matrix adjust.
 Identities = 299/635 (48%), Positives = 442/635 (70%), Gaps = 20/635 (3%)

Query  9    PKNKKLRHNEYYGIQTFLDNLYQKATKKNSFKNLMPIIISDENILLAFRNIKGNKGSKTA  68
            +K++K+R++EYY+++  +D LY  + K ++F++LM II S+ENI LA+R IK N GS T+
Sbjct  13   SKQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTS  72

Query  69   ACDNVNIKDIERMEQSYFLNEVKRRFQNYQPQKVRRKEIPKPNGKTRPLGIPSMWDRIIQ  128
            + D+  I D+ ++ +  ++  ++++F NY+P  VRR EIPKPNGKTRPLGIP++ DRI+Q
Sbjct  73   GVDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQ  132

Query  129  QCILQVMEPICEAHFCNRSHGFRPNRSAENAIADATKRVNQQNLTYVVDIDIQGFFDEVS  188
            QCILQVMEPICEA F + S+GFRPNRSAE AIA+  + ++ Q+L  VVD+DI+GFFD++S
Sbjct  133  QCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNIS  192

Query  189  HVKLMRQLWTLGIRDKQLLVIIRKILKAPVQLPNGKTIFPTKGTPQGGILSPLLANVNLN  248
            H KL+RQ+W+LGIRDK+LL II+ +LKAPV LPNG   +P++GTPQGGILSPLLAN+ LN
Sbjct  193  HTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLN  252

Query  249  EFDWWISNQWETFKAK-KVKPRLKDGIWSNDTVTYCLSKTSKMKPMYIVRYADDFKIFTN  307
            E+DWWI++QWE   +K K K R +       + +Y   + S++K M  VRYADDFKIF  
Sbjct  253  ELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCA  312

Query  308  TRRNAEKIFEATQMWLEERLKLPISTEKSKVTNLKKQQSEFLGFTLKAVKKGKKNGNTRY  367
            T+ +A + + AT++WL +RL L IS +KSKV NLK+Q S+FLGF         ++   +Y
Sbjct  313  THEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFK-----LKVRKKGKKY  367

Query  368  IAVTHISPKALEKTKQDLAKQVKRIQRTPNSNETIKRISIYNSMVIGKHNYYKIATHASL  427
            +  +H+S KA  K+ + ++ +VK++  +++ N  + ++  YNS+V G H+YY I+T+ S 
Sbjct  368  VVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSH  427

Query  428  DFSKMNHSLGHMMYNRFPKSKIRGKSNTNGYTNIGKYKGKDRGIKPYLKSKAMRFLMKCP  487
            DFS++  S+   +     +++++G  + +G    G  K K      Y  S+ MRFL   P
Sbjct  428  DFSRLAFSINKQL-----RNRLKGDLSKKGQLRNGFIKEK------YGASRQMRFLHGRP  476

Query  488  ILPISYIQHKKPMMKKQSINRYTAEGRALIHKNLAEITEAELKWLRENPVINERATIEYN  547
            ++P++Y+Q K++  K++SIN+YT  GR  IHKNLA I  A + WL  NPV + R TIEY 
Sbjct  477  VVPLGYVQSKNAQHKRKSINKYTVKGREQIHKNLA-IDTATMLWLMRNPV-KGR-TIEYA  533

Query  548  DNRISLYIAQKGRCSVTGEKLSPWDIHCHHKRLWSETRDDSYKNLTIIKPSVHTLIHATN  607
            DNRISLY AQ G+C+VTG  +++ DIHCHHK   S+   D Y NL ++  +VH LIHA++
Sbjct  534  DNRISLYAAQYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASS  593

Query  608  IETINQFLNKLKLNEEQLGKLNKLRKLVKNEEICM  642
              TI+++L+ L+L++ Q+ KLNKLR +     I +
Sbjct  594  EPTIEKYLKSLNLDNKQIEKLNKLRSMAEMPPIIL  628

16) BCAH820_B0018 in NC_011777


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  491 bits (1850),  Expect = 8e-140, Method: Compositional matrix adjust.
 Identities = 299/635 (48%), Positives = 442/635 (70%), Gaps = 20/635 (3%)

Query  9    PKNKKLRHNEYYGIQTFLDNLYQKATKKNSFKNLMPIIISDENILLAFRNIKGNKGSKTA  68
            +K++K+R++EYY+++  +D LY  + K ++F++LM II S+ENI LA+R IK N GS T+
Sbjct  13   SKQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTS  72

Query  69   ACDNVNIKDIERMEQSYFLNEVKRRFQNYQPQKVRRKEIPKPNGKTRPLGIPSMWDRIIQ  128
            + D+  I D+ ++ +  ++  ++++F NY+P  VRR EIPKPNGKTRPLGIP++ DRI+Q
Sbjct  73   GVDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQ  132

Query  129  QCILQVMEPICEAHFCNRSHGFRPNRSAENAIADATKRVNQQNLTYVVDIDIQGFFDEVS  188
            QCILQVMEPICEA F + S+GFRPNRSAE AIA+  + ++ Q+L  VVD+DI+GFFD++S
Sbjct  133  QCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNIS  192

Query  189  HVKLMRQLWTLGIRDKQLLVIIRKILKAPVQLPNGKTIFPTKGTPQGGILSPLLANVNLN  248
            H KL+RQ+W+LGIRDK+LL II+ +LKAPV LPNG   +P++GTPQGGILSPLLAN+ LN
Sbjct  193  HTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLN  252

Query  249  EFDWWISNQWETFKAK-KVKPRLKDGIWSNDTVTYCLSKTSKMKPMYIVRYADDFKIFTN  307
            E+DWWI++QWE   +K K K R +       + +Y   + S++K M  VRYADDFKIF  
Sbjct  253  ELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCA  312

Query  308  TRRNAEKIFEATQMWLEERLKLPISTEKSKVTNLKKQQSEFLGFTLKAVKKGKKNGNTRY  367
            T+ +A + + AT++WL +RL L IS +KSKV NLK+Q S+FLGF         ++   +Y
Sbjct  313  THEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFK-----LKVRKKGKKY  367

Query  368  IAVTHISPKALEKTKQDLAKQVKRIQRTPNSNETIKRISIYNSMVIGKHNYYKIATHASL  427
            +  +H+S KA  K+ + ++ +VK++  +++ N  + ++  YNS+V G H+YY I+T+ S 
Sbjct  368  VVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSH  427

Query  428  DFSKMNHSLGHMMYNRFPKSKIRGKSNTNGYTNIGKYKGKDRGIKPYLKSKAMRFLMKCP  487
            DFS++  S+   +     +++++G  + +G    G  K K      Y  S+ MRFL   P
Sbjct  428  DFSRLAFSINKQL-----RNRLKGDLSKKGQLRNGFIKEK------YGASRQMRFLHGRP  476

Query  488  ILPISYIQHKKPMMKKQSINRYTAEGRALIHKNLAEITEAELKWLRENPVINERATIEYN  547
            ++P++Y+Q K++  K++SIN+YT  GR  IHKNLA I  A + WL  NPV + R TIEY 
Sbjct  477  VVPLGYVQSKNAQHKRKSINKYTVKGREQIHKNLA-IDTATMLWLMRNPV-KGR-TIEYA  533

Query  548  DNRISLYIAQKGRCSVTGEKLSPWDIHCHHKRLWSETRDDSYKNLTIIKPSVHTLIHATN  607
            DNRISLY AQ G+C+VTG  +++ DIHCHHK   S+   D Y NL ++  +VH LIHA++
Sbjct  534  DNRISLYAAQYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASS  593

Query  608  IETINQFLNKLKLNEEQLGKLNKLRKLVKNEEICM  642
              TI+++L+ L+L++ Q+ KLNKLR +     I +
Sbjct  594  EPTIEKYLKSLNLDNKQIEKLNKLRSMAEMPPIIL  628

17) BCE_3691 in NC_003909


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  491 bits (1850),  Expect = 8e-140, Method: Compositional matrix adjust.
 Identities = 299/635 (48%), Positives = 442/635 (70%), Gaps = 20/635 (3%)

Query  9    PKNKKLRHNEYYGIQTFLDNLYQKATKKNSFKNLMPIIISDENILLAFRNIKGNKGSKTA  68
            +K++K+R++EYY+++  +D LY  + K ++F++LM II S+ENI LA+R IK N GS T+
Sbjct  13   SKQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTS  72

Query  69   ACDNVNIKDIERMEQSYFLNEVKRRFQNYQPQKVRRKEIPKPNGKTRPLGIPSMWDRIIQ  128
            + D+  I D+ ++ +  ++  ++++F NY+P  VRR EIPKPNGKTRPLGIP++ DRI+Q
Sbjct  73   GVDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQ  132

Query  129  QCILQVMEPICEAHFCNRSHGFRPNRSAENAIADATKRVNQQNLTYVVDIDIQGFFDEVS  188
            QCILQVMEPICEA F + S+GFRPNRSAE AIA+  + ++ Q+L  VVD+DI+GFFD++S
Sbjct  133  QCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNIS  192

Query  189  HVKLMRQLWTLGIRDKQLLVIIRKILKAPVQLPNGKTIFPTKGTPQGGILSPLLANVNLN  248
            H KL+RQ+W+LGIRDK+LL II+ +LKAPV LPNG   +P++GTPQGGILSPLLAN+ LN
Sbjct  193  HTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLN  252

Query  249  EFDWWISNQWETFKAK-KVKPRLKDGIWSNDTVTYCLSKTSKMKPMYIVRYADDFKIFTN  307
            E+DWWI++QWE   +K K K R +       + +Y   + S++K M  VRYADDFKIF  
Sbjct  253  ELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCA  312

Query  308  TRRNAEKIFEATQMWLEERLKLPISTEKSKVTNLKKQQSEFLGFTLKAVKKGKKNGNTRY  367
            T+ +A + + AT++WL +RL L IS +KSKV NLK+Q S+FLGF         ++   +Y
Sbjct  313  THEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFK-----LKVRKKGKKY  367

Query  368  IAVTHISPKALEKTKQDLAKQVKRIQRTPNSNETIKRISIYNSMVIGKHNYYKIATHASL  427
            +  +H+S KA  K+ + ++ +VK++  +++ N  + ++  YNS+V G H+YY I+T+ S 
Sbjct  368  VVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSH  427

Query  428  DFSKMNHSLGHMMYNRFPKSKIRGKSNTNGYTNIGKYKGKDRGIKPYLKSKAMRFLMKCP  487
            DFS++  S+   +     +++++G  + +G    G  K K      Y  S+ MRFL   P
Sbjct  428  DFSRLAFSINKQL-----RNRLKGDLSKKGQLRNGFIKEK------YGASRQMRFLHGRP  476

Query  488  ILPISYIQHKKPMMKKQSINRYTAEGRALIHKNLAEITEAELKWLRENPVINERATIEYN  547
            ++P++Y+Q K++  K++SIN+YT  GR  IHKNLA I  A + WL  NPV + R TIEY 
Sbjct  477  VVPLGYVQSKNAQHKRKSINKYTVKGREQIHKNLA-IDTATMLWLMRNPV-KGR-TIEYA  533

Query  548  DNRISLYIAQKGRCSVTGEKLSPWDIHCHHKRLWSETRDDSYKNLTIIKPSVHTLIHATN  607
            DNRISLY AQ G+C+VTG  +++ DIHCHHK   S+   D Y NL ++  +VH LIHA++
Sbjct  534  DNRISLYAAQYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASS  593

Query  608  IETINQFLNKLKLNEEQLGKLNKLRKLVKNEEICM  642
              TI+++L+ L+L++ Q+ KLNKLR +     I +
Sbjct  594  EPTIEKYLKSLNLDNKQIEKLNKLRSMAEMPPIIL  628

18) BCE_A0120 in NC_005707


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  491 bits (1850),  Expect = 8e-140, Method: Compositional matrix adjust.
 Identities = 299/635 (48%), Positives = 442/635 (70%), Gaps = 20/635 (3%)

Query  9    PKNKKLRHNEYYGIQTFLDNLYQKATKKNSFKNLMPIIISDENILLAFRNIKGNKGSKTA  68
            +K++K+R++EYY+++  +D LY  + K ++F++LM II S+ENI LA+R IK N GS T+
Sbjct  13   SKQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTS  72

Query  69   ACDNVNIKDIERMEQSYFLNEVKRRFQNYQPQKVRRKEIPKPNGKTRPLGIPSMWDRIIQ  128
            + D+  I D+ ++ +  ++  ++++F NY+P  VRR EIPKPNGKTRPLGIP++ DRI+Q
Sbjct  73   GVDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQ  132

Query  129  QCILQVMEPICEAHFCNRSHGFRPNRSAENAIADATKRVNQQNLTYVVDIDIQGFFDEVS  188
            QCILQVMEPICEA F + S+GFRPNRSAE AIA+  + ++ Q+L  VVD+DI+GFFD++S
Sbjct  133  QCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNIS  192

Query  189  HVKLMRQLWTLGIRDKQLLVIIRKILKAPVQLPNGKTIFPTKGTPQGGILSPLLANVNLN  248
            H KL+RQ+W+LGIRDK+LL II+ +LKAPV LPNG   +P++GTPQGGILSPLLAN+ LN
Sbjct  193  HTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLN  252

Query  249  EFDWWISNQWETFKAK-KVKPRLKDGIWSNDTVTYCLSKTSKMKPMYIVRYADDFKIFTN  307
            E+DWWI++QWE   +K K K R +       + +Y   + S++K M  VRYADDFKIF  
Sbjct  253  ELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCA  312

Query  308  TRRNAEKIFEATQMWLEERLKLPISTEKSKVTNLKKQQSEFLGFTLKAVKKGKKNGNTRY  367
            T+ +A + + AT++WL +RL L IS +KSKV NLK+Q S+FLGF         ++   +Y
Sbjct  313  THEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFK-----LKVRKKGKKY  367

Query  368  IAVTHISPKALEKTKQDLAKQVKRIQRTPNSNETIKRISIYNSMVIGKHNYYKIATHASL  427
            +  +H+S KA  K+ + ++ +VK++  +++ N  + ++  YNS+V G H+YY I+T+ S 
Sbjct  368  VVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSH  427

Query  428  DFSKMNHSLGHMMYNRFPKSKIRGKSNTNGYTNIGKYKGKDRGIKPYLKSKAMRFLMKCP  487
            DFS++  S+   +     +++++G  + +G    G  K K      Y  S+ MRFL   P
Sbjct  428  DFSRLAFSINKQL-----RNRLKGDLSKKGQLRNGFIKEK------YGASRQMRFLHGRP  476

Query  488  ILPISYIQHKKPMMKKQSINRYTAEGRALIHKNLAEITEAELKWLRENPVINERATIEYN  547
            ++P++Y+Q K++  K++SIN+YT  GR  IHKNLA I  A + WL  NPV + R TIEY 
Sbjct  477  VVPLGYVQSKNAQHKRKSINKYTVKGREQIHKNLA-IDTATMLWLMRNPV-KGR-TIEYA  533

Query  548  DNRISLYIAQKGRCSVTGEKLSPWDIHCHHKRLWSETRDDSYKNLTIIKPSVHTLIHATN  607
            DNRISLY AQ G+C+VTG  +++ DIHCHHK   S+   D Y NL ++  +VH LIHA++
Sbjct  534  DNRISLYAAQYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASS  593

Query  608  IETINQFLNKLKLNEEQLGKLNKLRKLVKNEEICM  642
              TI+++L+ L+L++ Q+ KLNKLR +     I +
Sbjct  594  EPTIEKYLKSLNLDNKQIEKLNKLRSMAEMPPIIL  628

19) BCN_3481 in NC_016771


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  491 bits (1850),  Expect = 8e-140, Method: Compositional matrix adjust.
 Identities = 299/635 (48%), Positives = 442/635 (70%), Gaps = 20/635 (3%)

Query  9    PKNKKLRHNEYYGIQTFLDNLYQKATKKNSFKNLMPIIISDENILLAFRNIKGNKGSKTA  68
            +K++K+R++EYY+++  +D LY  + K ++F++LM II S+ENI LA+R IK N GS T+
Sbjct  13   SKQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTS  72

Query  69   ACDNVNIKDIERMEQSYFLNEVKRRFQNYQPQKVRRKEIPKPNGKTRPLGIPSMWDRIIQ  128
            + D+  I D+ ++ +  ++  ++++F NY+P  VRR EIPKPNGKTRPLGIP++ DRI+Q
Sbjct  73   GVDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQ  132

Query  129  QCILQVMEPICEAHFCNRSHGFRPNRSAENAIADATKRVNQQNLTYVVDIDIQGFFDEVS  188
            QCILQVMEPICEA F + S+GFRPNRSAE AIA+  + ++ Q+L  VVD+DI+GFFD++S
Sbjct  133  QCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNIS  192

Query  189  HVKLMRQLWTLGIRDKQLLVIIRKILKAPVQLPNGKTIFPTKGTPQGGILSPLLANVNLN  248
            H KL+RQ+W+LGIRDK+LL II+ +LKAPV LPNG   +P++GTPQGGILSPLLAN+ LN
Sbjct  193  HTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLN  252

Query  249  EFDWWISNQWETFKAK-KVKPRLKDGIWSNDTVTYCLSKTSKMKPMYIVRYADDFKIFTN  307
            E+DWWI++QWE   +K K K R +       + +Y   + S++K M  VRYADDFKIF  
Sbjct  253  ELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCA  312

Query  308  TRRNAEKIFEATQMWLEERLKLPISTEKSKVTNLKKQQSEFLGFTLKAVKKGKKNGNTRY  367
            T+ +A + + AT++WL +RL L IS +KSKV NLK+Q S+FLGF         ++   +Y
Sbjct  313  THEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFK-----LKVRKKGKKY  367

Query  368  IAVTHISPKALEKTKQDLAKQVKRIQRTPNSNETIKRISIYNSMVIGKHNYYKIATHASL  427
            +  +H+S KA  K+ + ++ +VK++  +++ N  + ++  YNS+V G H+YY I+T+ S 
Sbjct  368  VVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSH  427

Query  428  DFSKMNHSLGHMMYNRFPKSKIRGKSNTNGYTNIGKYKGKDRGIKPYLKSKAMRFLMKCP  487
            DFS++  S+   +     +++++G  + +G    G  K K      Y  S+ MRFL   P
Sbjct  428  DFSRLAFSINKQL-----RNRLKGDLSKKGQLRNGFIKEK------YGASRQMRFLHGRP  476

Query  488  ILPISYIQHKKPMMKKQSINRYTAEGRALIHKNLAEITEAELKWLRENPVINERATIEYN  547
            ++P++Y+Q K++  K++SIN+YT  GR  IHKNLA I  A + WL  NPV + R TIEY 
Sbjct  477  VVPLGYVQSKNAQHKRKSINKYTVKGREQIHKNLA-IDTATMLWLMRNPV-KGR-TIEYA  533

Query  548  DNRISLYIAQKGRCSVTGEKLSPWDIHCHHKRLWSETRDDSYKNLTIIKPSVHTLIHATN  607
            DNRISLY AQ G+C+VTG  +++ DIHCHHK   S+   D Y NL ++  +VH LIHA++
Sbjct  534  DNRISLYAAQYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASS  593

Query  608  IETINQFLNKLKLNEEQLGKLNKLRKLVKNEEICM  642
              TI+++L+ L+L++ Q+ KLNKLR +     I +
Sbjct  594  EPTIEKYLKSLNLDNKQIEKLNKLRSMAEMPPIIL  628

20) BCN_P011 in NC_016792


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  491 bits (1850),  Expect = 8e-140, Method: Compositional matrix adjust.
 Identities = 299/635 (48%), Positives = 442/635 (70%), Gaps = 20/635 (3%)

Query  9    PKNKKLRHNEYYGIQTFLDNLYQKATKKNSFKNLMPIIISDENILLAFRNIKGNKGSKTA  68
            +K++K+R++EYY+++  +D LY  + K ++F++LM II S+ENI LA+R IK N GS T+
Sbjct  13   SKQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTS  72

Query  69   ACDNVNIKDIERMEQSYFLNEVKRRFQNYQPQKVRRKEIPKPNGKTRPLGIPSMWDRIIQ  128
            + D+  I D+ ++ +  ++  ++++F NY+P  VRR EIPKPNGKTRPLGIP++ DRI+Q
Sbjct  73   GVDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQ  132

Query  129  QCILQVMEPICEAHFCNRSHGFRPNRSAENAIADATKRVNQQNLTYVVDIDIQGFFDEVS  188
            QCILQVMEPICEA F + S+GFRPNRSAE AIA+  + ++ Q+L  VVD+DI+GFFD++S
Sbjct  133  QCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNIS  192

Query  189  HVKLMRQLWTLGIRDKQLLVIIRKILKAPVQLPNGKTIFPTKGTPQGGILSPLLANVNLN  248
            H KL+RQ+W+LGIRDK+LL II+ +LKAPV LPNG   +P++GTPQGGILSPLLAN+ LN
Sbjct  193  HTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLN  252

Query  249  EFDWWISNQWETFKAK-KVKPRLKDGIWSNDTVTYCLSKTSKMKPMYIVRYADDFKIFTN  307
            E+DWWI++QWE   +K K K R +       + +Y   + S++K M  VRYADDFKIF  
Sbjct  253  ELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCA  312

Query  308  TRRNAEKIFEATQMWLEERLKLPISTEKSKVTNLKKQQSEFLGFTLKAVKKGKKNGNTRY  367
            T+ +A + + AT++WL +RL L IS +KSKV NLK+Q S+FLGF         ++   +Y
Sbjct  313  THEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFK-----LKVRKKGKKY  367

Query  368  IAVTHISPKALEKTKQDLAKQVKRIQRTPNSNETIKRISIYNSMVIGKHNYYKIATHASL  427
            +  +H+S KA  K+ + ++ +VK++  +++ N  + ++  YNS+V G H+YY I+T+ S 
Sbjct  368  VVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSH  427

Query  428  DFSKMNHSLGHMMYNRFPKSKIRGKSNTNGYTNIGKYKGKDRGIKPYLKSKAMRFLMKCP  487
            DFS++  S+   +     +++++G  + +G    G  K K      Y  S+ MRFL   P
Sbjct  428  DFSRLAFSINKQL-----RNRLKGDLSKKGQLRNGFIKEK------YGASRQMRFLHGRP  476

Query  488  ILPISYIQHKKPMMKKQSINRYTAEGRALIHKNLAEITEAELKWLRENPVINERATIEYN  547
            ++P++Y+Q K++  K++SIN+YT  GR  IHKNLA I  A + WL  NPV + R TIEY 
Sbjct  477  VVPLGYVQSKNAQHKRKSINKYTVKGREQIHKNLA-IDTATMLWLMRNPV-KGR-TIEYA  533

Query  548  DNRISLYIAQKGRCSVTGEKLSPWDIHCHHKRLWSETRDDSYKNLTIIKPSVHTLIHATN  607
            DNRISLY AQ G+C+VTG  +++ DIHCHHK   S+   D Y NL ++  +VH LIHA++
Sbjct  534  DNRISLYAAQYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASS  593

Query  608  IETINQFLNKLKLNEEQLGKLNKLRKLVKNEEICM  642
              TI+++L+ L+L++ Q+ KLNKLR +     I +
Sbjct  594  EPTIEKYLKSLNLDNKQIEKLNKLRSMAEMPPIIL  628

21) BCQ_3462 in NC_011969


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  491 bits (1850),  Expect = 8e-140, Method: Compositional matrix adjust.
 Identities = 299/635 (48%), Positives = 442/635 (70%), Gaps = 20/635 (3%)

Query  9    PKNKKLRHNEYYGIQTFLDNLYQKATKKNSFKNLMPIIISDENILLAFRNIKGNKGSKTA  68
            +K++K+R++EYY+++  +D LY  + K ++F++LM II S+ENI LA+R IK N GS T+
Sbjct  13   SKQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTS  72

Query  69   ACDNVNIKDIERMEQSYFLNEVKRRFQNYQPQKVRRKEIPKPNGKTRPLGIPSMWDRIIQ  128
            + D+  I D+ ++ +  ++  ++++F NY+P  VRR EIPKPNGKTRPLGIP++ DRI+Q
Sbjct  73   GVDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQ  132

Query  129  QCILQVMEPICEAHFCNRSHGFRPNRSAENAIADATKRVNQQNLTYVVDIDIQGFFDEVS  188
            QCILQVMEPICEA F + S+GFRPNRSAE AIA+  + ++ Q+L  VVD+DI+GFFD++S
Sbjct  133  QCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNIS  192

Query  189  HVKLMRQLWTLGIRDKQLLVIIRKILKAPVQLPNGKTIFPTKGTPQGGILSPLLANVNLN  248
            H KL+RQ+W+LGIRDK+LL II+ +LKAPV LPNG   +P++GTPQGGILSPLLAN+ LN
Sbjct  193  HTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLN  252

Query  249  EFDWWISNQWETFKAK-KVKPRLKDGIWSNDTVTYCLSKTSKMKPMYIVRYADDFKIFTN  307
            E+DWWI++QWE   +K K K R +       + +Y   + S++K M  VRYADDFKIF  
Sbjct  253  ELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCA  312

Query  308  TRRNAEKIFEATQMWLEERLKLPISTEKSKVTNLKKQQSEFLGFTLKAVKKGKKNGNTRY  367
            T+ +A + + AT++WL +RL L IS +KSKV NLK+Q S+FLGF         ++   +Y
Sbjct  313  THEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFK-----LKVRKKGKKY  367

Query  368  IAVTHISPKALEKTKQDLAKQVKRIQRTPNSNETIKRISIYNSMVIGKHNYYKIATHASL  427
            +  +H+S KA  K+ + ++ +VK++  +++ N  + ++  YNS+V G H+YY I+T+ S 
Sbjct  368  VVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSH  427

Query  428  DFSKMNHSLGHMMYNRFPKSKIRGKSNTNGYTNIGKYKGKDRGIKPYLKSKAMRFLMKCP  487
            DFS++  S+   +     +++++G  + +G    G  K K      Y  S+ MRFL   P
Sbjct  428  DFSRLAFSINKQL-----RNRLKGDLSKKGQLRNGFIKEK------YGASRQMRFLHGRP  476

Query  488  ILPISYIQHKKPMMKKQSINRYTAEGRALIHKNLAEITEAELKWLRENPVINERATIEYN  547
            ++P++Y+Q K++  K++SIN+YT  GR  IHKNLA I  A + WL  NPV + R TIEY 
Sbjct  477  VVPLGYVQSKNAQHKRKSINKYTVKGREQIHKNLA-IDTATMLWLMRNPV-KGR-TIEYA  533

Query  548  DNRISLYIAQKGRCSVTGEKLSPWDIHCHHKRLWSETRDDSYKNLTIIKPSVHTLIHATN  607
            DNRISLY AQ G+C+VTG  +++ DIHCHHK   S+   D Y NL ++  +VH LIHA++
Sbjct  534  DNRISLYAAQYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASS  593

Query  608  IETINQFLNKLKLNEEQLGKLNKLRKLVKNEEICM  642
              TI+++L+ L+L++ Q+ KLNKLR +     I +
Sbjct  594  EPTIEKYLKSLNLDNKQIEKLNKLRSMAEMPPIIL  628

22) BCQ_PI125 in NC_011973


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  491 bits (1850),  Expect = 8e-140, Method: Compositional matrix adjust.
 Identities = 299/635 (48%), Positives = 442/635 (70%), Gaps = 20/635 (3%)

Query  9    PKNKKLRHNEYYGIQTFLDNLYQKATKKNSFKNLMPIIISDENILLAFRNIKGNKGSKTA  68
            +K++K+R++EYY+++  +D LY  + K ++F++LM II S+ENI LA+R IK N GS T+
Sbjct  13   SKQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTS  72

Query  69   ACDNVNIKDIERMEQSYFLNEVKRRFQNYQPQKVRRKEIPKPNGKTRPLGIPSMWDRIIQ  128
            + D+  I D+ ++ +  ++  ++++F NY+P  VRR EIPKPNGKTRPLGIP++ DRI+Q
Sbjct  73   GVDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQ  132

Query  129  QCILQVMEPICEAHFCNRSHGFRPNRSAENAIADATKRVNQQNLTYVVDIDIQGFFDEVS  188
            QCILQVMEPICEA F + S+GFRPNRSAE AIA+  + ++ Q+L  VVD+DI+GFFD++S
Sbjct  133  QCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNIS  192

Query  189  HVKLMRQLWTLGIRDKQLLVIIRKILKAPVQLPNGKTIFPTKGTPQGGILSPLLANVNLN  248
            H KL+RQ+W+LGIRDK+LL II+ +LKAPV LPNG   +P++GTPQGGILSPLLAN+ LN
Sbjct  193  HTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLN  252

Query  249  EFDWWISNQWETFKAK-KVKPRLKDGIWSNDTVTYCLSKTSKMKPMYIVRYADDFKIFTN  307
            E+DWWI++QWE   +K K K R +       + +Y   + S++K M  VRYADDFKIF  
Sbjct  253  ELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCA  312

Query  308  TRRNAEKIFEATQMWLEERLKLPISTEKSKVTNLKKQQSEFLGFTLKAVKKGKKNGNTRY  367
            T+ +A + + AT++WL +RL L IS +KSKV NLK+Q S+FLGF         ++   +Y
Sbjct  313  THEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFK-----LKVRKKGKKY  367

Query  368  IAVTHISPKALEKTKQDLAKQVKRIQRTPNSNETIKRISIYNSMVIGKHNYYKIATHASL  427
            +  +H+S KA  K+ + ++ +VK++  +++ N  + ++  YNS+V G H+YY I+T+ S 
Sbjct  368  VVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSH  427

Query  428  DFSKMNHSLGHMMYNRFPKSKIRGKSNTNGYTNIGKYKGKDRGIKPYLKSKAMRFLMKCP  487
            DFS++  S+   +     +++++G  + +G    G  K K      Y  S+ MRFL   P
Sbjct  428  DFSRLAFSINKQL-----RNRLKGDLSKKGQLRNGFIKEK------YGASRQMRFLHGRP  476

Query  488  ILPISYIQHKKPMMKKQSINRYTAEGRALIHKNLAEITEAELKWLRENPVINERATIEYN  547
            ++P++Y+Q K++  K++SIN+YT  GR  IHKNLA I  A + WL  NPV + R TIEY 
Sbjct  477  VVPLGYVQSKNAQHKRKSINKYTVKGREQIHKNLA-IDTATMLWLMRNPV-KGR-TIEYA  533

Query  548  DNRISLYIAQKGRCSVTGEKLSPWDIHCHHKRLWSETRDDSYKNLTIIKPSVHTLIHATN  607
            DNRISLY AQ G+C+VTG  +++ DIHCHHK   S+   D Y NL ++  +VH LIHA++
Sbjct  534  DNRISLYAAQYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASS  593

Query  608  IETINQFLNKLKLNEEQLGKLNKLRKLVKNEEICM  642
              TI+++L+ L+L++ Q+ KLNKLR +     I +
Sbjct  594  EPTIEKYLKSLNLDNKQIEKLNKLRSMAEMPPIIL  628

23) BCE_A0034 in NC_005707


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  487 bits (1838),  Expect = 7e-139, Method: Compositional matrix adjust.
 Identities = 299/616 (49%), Positives = 438/616 (72%), Gaps = 14/616 (2%)

Query  10   KDNSLRHSEYYGMQESQDELYAKSLNGGNFKQLMKVITSESNILLAFRNIKRNSGSITEG  69
            K+  +R+SEYY+M+ + D LYA S ++  F++LM +I SE NI LA+R IK+N+GS T G
Sbjct  14   KQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSG  73

Query  70   IDGVTIKDVEKLSQEDFIKIVQKRFSNYTPRKVRRVEIPKPNGKTRPLGIPSMWDRIAQQ  129
            +D  TI D+ KLS+E+++++++K+FSNY P  VRRVEIPKPNGKTRPLGIP++ DRI QQ
Sbjct  74   VDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQ  133

Query  130  CIKQVLEPICEAKFNKHSHGFRPNRSPETAMADATLRVNRSHMQYVVNVDIQGFFDEVNH  189
            CI QV+EPICEAKF+ +S+GFRPNRS+ETA+A+    ++  H+  VV++DI+GFFD+++H
Sbjct  134  CILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISH  193

Query  190  KKLMRQLWTMGIRDKQLLVIIRKMLKAPIVLPNGEMQYPNKGTPQGGILSPLLANINLNE  249
             KL+RQ+W++GIRDK+LL II+ MLKAP+VLPNGE  YP +GTPQGGILSPLLANI LNE
Sbjct  194  TKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLNE  253

Query  250  FDWWITNQWEDRLLKELSLTIKKGGHVD--KYPHYSKMRKTTALKEMYIVRYADDFKIFT  307
            +DWWI++QWE+   K   +  +  ++    K   Y  +R++  LKEM  VRYADDFKIF 
Sbjct  254  LDWWIASQWEEMPTKT-KFKTRSNAQGTEIKSHAYRALRRSR-LKEMHAVRYADDFKIFC  311

Query  308  ATKSNAQKIFKACEMWLQERLKLPISKEKSKITNLRKESSEFLGFEIKMVKKGSKLIART  367
            AT  +A + +KA E+WL++RL L IS +KSK+ NL+++ S+FLGF +K+ KKG K + R+
Sbjct  312  ATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRS  371

Query  368  HISNKTKKKIQKQFEDQIAVIQRSKNEGLKNKAIVRYNSMVIGTHNYYEIATEVNRDLA-  426
            H+S+K+ KK + +  +++  +  S ++  +   + +YNS+V G H+YY I+TEV++D++ 
Sbjct  372  HMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSR  431

Query  427  ---SIHKHLNIRIYNRLHVNRkgkykgkdkgikRYMKSAMVRYLNDIPILPLAYIKHKSP  483
               SI+K+L  R+   L    K     ++    +Y  S  +R+L++ P++PL+Y++ K++
Sbjct  432  LAFSINKQLRNRLKGDL---SKKGQLRNGFIKEKYGASRQMRFLHGRPVVPLGYVQSKNA  488

Query  484  KNKDTKINKYTPQGRELIHKNQSAVPEWKIQWLREHPVISQRATVEYNDNRISLFVAQHG  543
            ++K   INKYT +GRE IHKN +      + WL  +PV ++  T+EY DNRISL+ AQ G
Sbjct  489  QHKRKSINKYTVKGREQIHKNLAIDTA-TMLWLMRNPVKGR--TIEYADNRISLYAAQYG  545

Query  544  KCAITSEELILSDMQCHHKTPWKYTQDDSYKNLILICRDVHTLIHATSPDVIGGLMEKLK  603
            KCA+T+  +   D++CHHK P      D Y NLIL+ + VH LIHA+S   I   +  L+
Sbjct  546  KCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLN  605

Query  604  LNEGQLIKLNKLRKQA  619
            L++ Q+ KLNKLR  A
Sbjct  606  LDNKQIEKLNKLRSMA  621

24) BAA_A0035 in NC_012656


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  472 bits (1778),  Expect = 4e-134, Method: Compositional matrix adjust.
 Identities = 295/637 (47%), Positives = 440/637 (70%), Gaps = 23/637 (3%)

Query  2    NGNSKSAPKGKKLRHNEYYGIQPVLDNLYQKATKGNSFKNLMSIIISDENILLAYRNIKG  61
            +G+    +K +K+R++EYY+++  +D LY  + K+++F++LM II S+ENI LAYR IK 
Sbjct  6    SGQQERKSKQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKK  65

Query  62   NKGSRTAACDNVNIKNIEGMEQSYFLNEVKRRFQNYQPQKVRRKEISKPNGQTRPLGIPA  121
            N GS T++ D+  I ++  + +  ++  ++++F NY+P  VRR EI+KPNG+TRPLGIP+
Sbjct  66   NTGSDTSGVDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPT  125

Query  122  MWDRIIQQCILQVMEPICEAHFSNRSYGFRPNRSAEHALADASVRVNKQNLTYVVDVDIK  181
            + DRI+QQCILQVMEPICEA FS+ S GFRPNRSAE A+A+    ++ Q+L  VVD+DIK
Sbjct  126  IVDRIVQQCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIK  185

Query  182  GFFDEVNHVKLMRQLWTLGIRDKQLLVIIRKILKAPVQMPDGTTMFPTKGTPQGGILSPI  241
            GFFD+++H KL+RQ+W+LGIRDK+LL II+ +LKAPV +P+G   +P++GTPQGGILSP+
Sbjct  186  GFFDNISHTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPL  245

Query  242  LANVNLNEFDWWISRQWETFKAK-KVKPRC-MRGIWCNDVVTTQLTKTSKMKPMYIVRYA  299
            LAN+ LNE+DWWI+ QWE   +K K K R   +G   +      L + S++K M  VRYA
Sbjct  246  LANIVLNELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRAL-RRSRLKEMHAVRYA  304

Query  300  DDFKIFTNTRSNAEKIFKATQMWLEERLKLSISAEKSKVTNLTKQQSEFLGFTLkavkkg  359
            DDFKIF  T+ +A + +KAT++WL +RL L IS++KSKV NL +Q S+FLGF        
Sbjct  305  DDFKIFCATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFK------L  358

Query  360  kkkNGDTRYIAVTHVSPKALEKTKQDLAKQVRRIQKTPNSNETIKRISIYNSMVIGKHNY  419
            K ++ + +Y+  +H+S KA  K+ + ++ +V+++  +++ N  + ++  YNS+V G H+Y
Sbjct  359  KVRKKGKKYVVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEY  418

Query  420  YKIATHASQDFSKMNHNLDHIMYNRFPKSTTGGKSNTNGYTNIGEYKGKDKGIKPYLKSK  479
            Y I+T+ S+DFS++  +++  + NR+    +      NG+        K+K    Y  S+
Sbjct  419  YCISTEVSHDFSRLAFSINKQLRNRLKGDLSKKGQLRNGFI-------KEK----YGASR  467

Query  480  MTRFLMKRPILPISYIQHKNPMMKKQAINKYTAEGRALIHKNLADITEAELKWLRENPVI  539
              RFL  RP++P++Y+Q KN+  K+++INKYT  GR  IHKNLA I  A + WL  NPV 
Sbjct  468  QMRFLHGRPVVPLGYVQSKNAQHKRKSINKYTVKGREQIHKNLA-IDTATMLWLMRNPV-  525

Query  540  NERATVEYNDNRISLYVAQKGKCSVTGEKLLPWDIHCHHKRLWSETKDDSYKNLTIIKPS  599
            + R T+EY DNRISLY AQ GKC+VTG  + + DIHCHHK   S+   D Y NL ++  +
Sbjct  526  KGR-TIEYADNRISLYAAQYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKA  584

Query  600  VHRLIHATKIETINQLLNELKFNEEQLGKLNKLRKLV  636
            VH LIHA+   TI++ L+ L++++ Q+ KLNKLR + 
Sbjct  585  VHILIHASSEPTIEKYLKSLNLDNKQIEKLNKLRSMA  621

25) GBAA_pXO1_0035 in NC_007322


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  472 bits (1778),  Expect = 4e-134, Method: Compositional matrix adjust.
 Identities = 295/637 (47%), Positives = 440/637 (70%), Gaps = 23/637 (3%)

Query  2    NGNSKSAPKGKKLRHNEYYGIQPVLDNLYQKATKGNSFKNLMSIIISDENILLAYRNIKG  61
            +G+    +K +K+R++EYY+++  +D LY  + K+++F++LM II S+ENI LAYR IK 
Sbjct  6    SGQQERKSKQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKK  65

Query  62   NKGSRTAACDNVNIKNIEGMEQSYFLNEVKRRFQNYQPQKVRRKEISKPNGQTRPLGIPA  121
            N GS T++ D+  I ++  + +  ++  ++++F NY+P  VRR EI+KPNG+TRPLGIP+
Sbjct  66   NTGSDTSGVDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPT  125

Query  122  MWDRIIQQCILQVMEPICEAHFSNRSYGFRPNRSAEHALADASVRVNKQNLTYVVDVDIK  181
            + DRI+QQCILQVMEPICEA FS+ S GFRPNRSAE A+A+    ++ Q+L  VVD+DIK
Sbjct  126  IVDRIVQQCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIK  185

Query  182  GFFDEVNHVKLMRQLWTLGIRDKQLLVIIRKILKAPVQMPDGTTMFPTKGTPQGGILSPI  241
            GFFD+++H KL+RQ+W+LGIRDK+LL II+ +LKAPV +P+G   +P++GTPQGGILSP+
Sbjct  186  GFFDNISHTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPL  245

Query  242  LANVNLNEFDWWISRQWETFKAK-KVKPRC-MRGIWCNDVVTTQLTKTSKMKPMYIVRYA  299
            LAN+ LNE+DWWI+ QWE   +K K K R   +G   +      L + S++K M  VRYA
Sbjct  246  LANIVLNELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRAL-RRSRLKEMHAVRYA  304

Query  300  DDFKIFTNTRSNAEKIFKATQMWLEERLKLSISAEKSKVTNLTKQQSEFLGFTLkavkkg  359
            DDFKIF  T+ +A + +KAT++WL +RL L IS++KSKV NL +Q S+FLGF        
Sbjct  305  DDFKIFCATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFK------L  358

Query  360  kkkNGDTRYIAVTHVSPKALEKTKQDLAKQVRRIQKTPNSNETIKRISIYNSMVIGKHNY  419
            K ++ + +Y+  +H+S KA  K+ + ++ +V+++  +++ N  + ++  YNS+V G H+Y
Sbjct  359  KVRKKGKKYVVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEY  418

Query  420  YKIATHASQDFSKMNHNLDHIMYNRFPKSTTGGKSNTNGYTNIGEYKGKDKGIKPYLKSK  479
            Y I+T+ S+DFS++  +++  + NR+    +      NG+        K+K    Y  S+
Sbjct  419  YCISTEVSHDFSRLAFSINKQLRNRLKGDLSKKGQLRNGFI-------KEK----YGASR  467

Query  480  MTRFLMKRPILPISYIQHKNPMMKKQAINKYTAEGRALIHKNLADITEAELKWLRENPVI  539
              RFL  RP++P++Y+Q KN+  K+++INKYT  GR  IHKNLA I  A + WL  NPV 
Sbjct  468  QMRFLHGRPVVPLGYVQSKNAQHKRKSINKYTVKGREQIHKNLA-IDTATMLWLMRNPV-  525

Query  540  NERATVEYNDNRISLYVAQKGKCSVTGEKLLPWDIHCHHKRLWSETKDDSYKNLTIIKPS  599
            + R T+EY DNRISLY AQ GKC+VTG  + + DIHCHHK   S+   D Y NL ++  +
Sbjct  526  KGR-TIEYADNRISLYAAQYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKA  584

Query  600  VHRLIHATKIETINQLLNELKFNEEQLGKLNKLRKLV  636
            VH LIHA+   TI++ L+ L++++ Q+ KLNKLR + 
Sbjct  585  VHILIHASSEPTIEKYLKSLNLDNKQIEKLNKLRSMA  621

26) BAMEG_A0034 in NC_012579


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  472 bits (1778),  Expect = 4e-134, Method: Compositional matrix adjust.
 Identities = 295/637 (47%), Positives = 440/637 (70%), Gaps = 23/637 (3%)

Query  2    NGNSKSAPKGKKLRHNEYYGIQPVLDNLYQKATKGNSFKNLMSIIISDENILLAYRNIKG  61
            +G+    +K +K+R++EYY+++  +D LY  + K+++F++LM II S+ENI LAYR IK 
Sbjct  6    SGQQERKSKQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKK  65

Query  62   NKGSRTAACDNVNIKNIEGMEQSYFLNEVKRRFQNYQPQKVRRKEISKPNGQTRPLGIPA  121
            N GS T++ D+  I ++  + +  ++  ++++F NY+P  VRR EI+KPNG+TRPLGIP+
Sbjct  66   NTGSDTSGVDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPT  125

Query  122  MWDRIIQQCILQVMEPICEAHFSNRSYGFRPNRSAEHALADASVRVNKQNLTYVVDVDIK  181
            + DRI+QQCILQVMEPICEA FS+ S GFRPNRSAE A+A+    ++ Q+L  VVD+DIK
Sbjct  126  IVDRIVQQCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIK  185

Query  182  GFFDEVNHVKLMRQLWTLGIRDKQLLVIIRKILKAPVQMPDGTTMFPTKGTPQGGILSPI  241
            GFFD+++H KL+RQ+W+LGIRDK+LL II+ +LKAPV +P+G   +P++GTPQGGILSP+
Sbjct  186  GFFDNISHTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPL  245

Query  242  LANVNLNEFDWWISRQWETFKAK-KVKPRC-MRGIWCNDVVTTQLTKTSKMKPMYIVRYA  299
            LAN+ LNE+DWWI+ QWE   +K K K R   +G   +      L + S++K M  VRYA
Sbjct  246  LANIVLNELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRAL-RRSRLKEMHAVRYA  304

Query  300  DDFKIFTNTRSNAEKIFKATQMWLEERLKLSISAEKSKVTNLTKQQSEFLGFTLkavkkg  359
            DDFKIF  T+ +A + +KAT++WL +RL L IS++KSKV NL +Q S+FLGF        
Sbjct  305  DDFKIFCATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFK------L  358

Query  360  kkkNGDTRYIAVTHVSPKALEKTKQDLAKQVRRIQKTPNSNETIKRISIYNSMVIGKHNY  419
            K ++ + +Y+  +H+S KA  K+ + ++ +V+++  +++ N  + ++  YNS+V G H+Y
Sbjct  359  KVRKKGKKYVVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEY  418

Query  420  YKIATHASQDFSKMNHNLDHIMYNRFPKSTTGGKSNTNGYTNIGEYKGKDKGIKPYLKSK  479
            Y I+T+ S+DFS++  +++  + NR+    +      NG+        K+K    Y  S+
Sbjct  419  YCISTEVSHDFSRLAFSINKQLRNRLKGDLSKKGQLRNGFI-------KEK----YGASR  467

Query  480  MTRFLMKRPILPISYIQHKNPMMKKQAINKYTAEGRALIHKNLADITEAELKWLRENPVI  539
              RFL  RP++P++Y+Q KN+  K+++INKYT  GR  IHKNLA I  A + WL  NPV 
Sbjct  468  QMRFLHGRPVVPLGYVQSKNAQHKRKSINKYTVKGREQIHKNLA-IDTATMLWLMRNPV-  525

Query  540  NERATVEYNDNRISLYVAQKGKCSVTGEKLLPWDIHCHHKRLWSETKDDSYKNLTIIKPS  599
            + R T+EY DNRISLY AQ GKC+VTG  + + DIHCHHK   S+   D Y NL ++  +
Sbjct  526  KGR-TIEYADNRISLYAAQYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKA  584

Query  600  VHRLIHATKIETINQLLNELKFNEEQLGKLNKLRKLV  636
            VH LIHA+   TI++ L+ L++++ Q+ KLNKLR + 
Sbjct  585  VHILIHASSEPTIEKYLKSLNLDNKQIEKLNKLRSMA  621

27) H9401_5514 in NC_017726


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  472 bits (1778),  Expect = 4e-134, Method: Compositional matrix adjust.
 Identities = 295/637 (47%), Positives = 440/637 (70%), Gaps = 23/637 (3%)

Query  2    NGNSKSAPKGKKLRHNEYYGIQPVLDNLYQKATKGNSFKNLMSIIISDENILLAYRNIKG  61
            +G+    +K +K+R++EYY+++  +D LY  + K+++F++LM II S+ENI LAYR IK 
Sbjct  6    SGQQERKSKQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKK  65

Query  62   NKGSRTAACDNVNIKNIEGMEQSYFLNEVKRRFQNYQPQKVRRKEISKPNGQTRPLGIPA  121
            N GS T++ D+  I ++  + +  ++  ++++F NY+P  VRR EI+KPNG+TRPLGIP+
Sbjct  66   NTGSDTSGVDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPT  125

Query  122  MWDRIIQQCILQVMEPICEAHFSNRSYGFRPNRSAEHALADASVRVNKQNLTYVVDVDIK  181
            + DRI+QQCILQVMEPICEA FS+ S GFRPNRSAE A+A+    ++ Q+L  VVD+DIK
Sbjct  126  IVDRIVQQCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIK  185

Query  182  GFFDEVNHVKLMRQLWTLGIRDKQLLVIIRKILKAPVQMPDGTTMFPTKGTPQGGILSPI  241
            GFFD+++H KL+RQ+W+LGIRDK+LL II+ +LKAPV +P+G   +P++GTPQGGILSP+
Sbjct  186  GFFDNISHTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPL  245

Query  242  LANVNLNEFDWWISRQWETFKAK-KVKPRC-MRGIWCNDVVTTQLTKTSKMKPMYIVRYA  299
            LAN+ LNE+DWWI+ QWE   +K K K R   +G   +      L + S++K M  VRYA
Sbjct  246  LANIVLNELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRAL-RRSRLKEMHAVRYA  304

Query  300  DDFKIFTNTRSNAEKIFKATQMWLEERLKLSISAEKSKVTNLTKQQSEFLGFTLkavkkg  359
            DDFKIF  T+ +A + +KAT++WL +RL L IS++KSKV NL +Q S+FLGF        
Sbjct  305  DDFKIFCATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFK------L  358

Query  360  kkkNGDTRYIAVTHVSPKALEKTKQDLAKQVRRIQKTPNSNETIKRISIYNSMVIGKHNY  419
            K ++ + +Y+  +H+S KA  K+ + ++ +V+++  +++ N  + ++  YNS+V G H+Y
Sbjct  359  KVRKKGKKYVVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEY  418

Query  420  YKIATHASQDFSKMNHNLDHIMYNRFPKSTTGGKSNTNGYTNIGEYKGKDKGIKPYLKSK  479
            Y I+T+ S+DFS++  +++  + NR+    +      NG+        K+K    Y  S+
Sbjct  419  YCISTEVSHDFSRLAFSINKQLRNRLKGDLSKKGQLRNGFI-------KEK----YGASR  467

Query  480  MTRFLMKRPILPISYIQHKNPMMKKQAINKYTAEGRALIHKNLADITEAELKWLRENPVI  539
              RFL  RP++P++Y+Q KN+  K+++INKYT  GR  IHKNLA I  A + WL  NPV 
Sbjct  468  QMRFLHGRPVVPLGYVQSKNAQHKRKSINKYTVKGREQIHKNLA-IDTATMLWLMRNPV-  525

Query  540  NERATVEYNDNRISLYVAQKGKCSVTGEKLLPWDIHCHHKRLWSETKDDSYKNLTIIKPS  599
            + R T+EY DNRISLY AQ GKC+VTG  + + DIHCHHK   S+   D Y NL ++  +
Sbjct  526  KGR-TIEYADNRISLYAAQYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKA  584

Query  600  VHRLIHATKIETINQLLNELKFNEEQLGKLNKLRKLV  636
            VH LIHA+   TI++ L+ L++++ Q+ KLNKLR + 
Sbjct  585  VHILIHASSEPTIEKYLKSLNLDNKQIEKLNKLRSMA  621

28) BACI_pCIXO100350 in NC_014331


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  472 bits (1778),  Expect = 4e-134, Method: Compositional matrix adjust.
 Identities = 295/637 (47%), Positives = 440/637 (70%), Gaps = 23/637 (3%)

Query  2    NGNSKSAPKGKKLRHNEYYGIQPVLDNLYQKATKGNSFKNLMSIIISDENILLAYRNIKG  61
            +G+    +K +K+R++EYY+++  +D LY  + K+++F++LM II S+ENI LAYR IK 
Sbjct  6    SGQQERKSKQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKK  65

Query  62   NKGSRTAACDNVNIKNIEGMEQSYFLNEVKRRFQNYQPQKVRRKEISKPNGQTRPLGIPA  121
            N GS T++ D+  I ++  + +  ++  ++++F NY+P  VRR EI+KPNG+TRPLGIP+
Sbjct  66   NTGSDTSGVDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPT  125

Query  122  MWDRIIQQCILQVMEPICEAHFSNRSYGFRPNRSAEHALADASVRVNKQNLTYVVDVDIK  181
            + DRI+QQCILQVMEPICEA FS+ S GFRPNRSAE A+A+    ++ Q+L  VVD+DIK
Sbjct  126  IVDRIVQQCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIK  185

Query  182  GFFDEVNHVKLMRQLWTLGIRDKQLLVIIRKILKAPVQMPDGTTMFPTKGTPQGGILSPI  241
            GFFD+++H KL+RQ+W+LGIRDK+LL II+ +LKAPV +P+G   +P++GTPQGGILSP+
Sbjct  186  GFFDNISHTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPL  245

Query  242  LANVNLNEFDWWISRQWETFKAK-KVKPRC-MRGIWCNDVVTTQLTKTSKMKPMYIVRYA  299
            LAN+ LNE+DWWI+ QWE   +K K K R   +G   +      L + S++K M  VRYA
Sbjct  246  LANIVLNELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRAL-RRSRLKEMHAVRYA  304

Query  300  DDFKIFTNTRSNAEKIFKATQMWLEERLKLSISAEKSKVTNLTKQQSEFLGFTLkavkkg  359
            DDFKIF  T+ +A + +KAT++WL +RL L IS++KSKV NL +Q S+FLGF        
Sbjct  305  DDFKIFCATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFK------L  358

Query  360  kkkNGDTRYIAVTHVSPKALEKTKQDLAKQVRRIQKTPNSNETIKRISIYNSMVIGKHNY  419
            K ++ + +Y+  +H+S KA  K+ + ++ +V+++  +++ N  + ++  YNS+V G H+Y
Sbjct  359  KVRKKGKKYVVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEY  418

Query  420  YKIATHASQDFSKMNHNLDHIMYNRFPKSTTGGKSNTNGYTNIGEYKGKDKGIKPYLKSK  479
            Y I+T+ S+DFS++  +++  + NR+    +      NG+        K+K    Y  S+
Sbjct  419  YCISTEVSHDFSRLAFSINKQLRNRLKGDLSKKGQLRNGFI-------KEK----YGASR  467

Query  480  MTRFLMKRPILPISYIQHKNPMMKKQAINKYTAEGRALIHKNLADITEAELKWLRENPVI  539
              RFL  RP++P++Y+Q KN+  K+++INKYT  GR  IHKNLA I  A + WL  NPV 
Sbjct  468  QMRFLHGRPVVPLGYVQSKNAQHKRKSINKYTVKGREQIHKNLA-IDTATMLWLMRNPV-  525

Query  540  NERATVEYNDNRISLYVAQKGKCSVTGEKLLPWDIHCHHKRLWSETKDDSYKNLTIIKPS  599
            + R T+EY DNRISLY AQ GKC+VTG  + + DIHCHHK   S+   D Y NL ++  +
Sbjct  526  KGR-TIEYADNRISLYAAQYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKA  584

Query  600  VHRLIHATKIETINQLLNELKFNEEQLGKLNKLRKLV  636
            VH LIHA+   TI++ L+ L++++ Q+ KLNKLR + 
Sbjct  585  VHILIHASSEPTIEKYLKSLNLDNKQIEKLNKLRSMA  621

29) CKL_0583 in NC_009706


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  467 bits (1760),  Expect = 1e-132, Method: Compositional matrix adjust.
 Identities = 300/615 (49%), Positives = 441/615 (72%), Gaps = 22/615 (3%)

Query  7    KHEKRQKLRNSEYYDMQKYFDTLYEESNKGKKFKNLLTLICDERNIFLAYRNIKKNKGSK  66
            +  K++K+RNSEYYDM+  FD LY ES+K+K F++L+ +I  E NI LAYR IKKN GS 
Sbjct  11   RKSKQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSD  70

Query  67   TQGVNTNTIMDIGEENPDELAIYVRERLINYKPQPVRRVEIPKPNGKMRPLGIPTIEDRI  126
            T GV+  TI D++  + +E    +R ++ NY P PVRRVEIPKPNGK RPLGIPTI DRI
Sbjct  71   TSGVDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRI  130

Query  127  IQQCIKQVLEPICEAKFHKDSYGFRPNRSTHHAIARTYSLANINKLTYVVDIDIKGFFDN  186
            +QQCI QV+EPICEAKF  +S GFRPNRS++ AIA+   L +++ L  VVD+DIKGFFDN
Sbjct  131  VQQCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDN  190

Query  187  VNHSKLLKQMWTMGIQDKNLLCVISKMLKAEI----KGVGIPNKGTPQGGILSPLLSNIV  242
            ++H+KL++Q+W++GI+DK+LLC+I  MLKA +         P +GTPQGGILSPLL+NIV
Sbjct  191  ISHTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIV  250

Query  243  LNELDWWISNQWQTL--KSKFPYKREI-------FKYQALKRSKLKEVYIVRYADDFKLF  293
            LNELDWWI++QW+ +  K+KF  + +          Y+AL+RS+LKE+  VRYADDFK+F
Sbjct  251  LNELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIF  310

Query  294  CRSYNNAKKIFKAVTMWLKERLGLEINEEKSSIVNLKQKYSEflgfkfklksknkkHVIT  353
            C + ++A + +KA  +WLK+RLGLEI+ +KS +VNLK++YS+FLGFK+K++ K KK V+ 
Sbjct  311  CATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVR  370

Query  354  SNVSDKAKERIRKTLIDRVKQIQKRANASVA----SKYNATVLGMHNYYKVATEVNIDFS  409
            S++SDKA  + +  + + VK++   ++ +       KYN+ V G+H+YY ++TEV+ DFS
Sbjct  371  SHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFS  430

Query  410  KIAYLVNRVIYNRLRGLSTKKGFKSEAYKKLYGKYN-FKEVS-IAKMTLYPIAGITTKPP  467
            ++A+ +N+ + NRL+G  +KKG   +++ K   KY   +++  +    + P++ + +K +
Sbjct  431  RLAFSINKQLRNRLKGDLSKKGQLRNGFIK--EKYGASRQMRFLHGRPVVPLGYVQSKNA  488

Query  468  LNFPIGVNSYTVEGRNKIHENLKRYNAKLLRYITENPIRGATVEFNDNRISLYISQNGKC  527
             +   ++N YTV GR++IH NL    A +L+ +  NP++G T+E+ DNRISLY +Q GKC
Sbjct  489  QHKRKSINKYTVKGREQIHKNLAIDTATMLW-LMRNPVKGRTIEYADNRISLYAAQYGKC  547

Query  528  GITGKVLEHGEIEVHHKIPKGKGGTDKYKNLIIVSEAIHKLIHATVAETIERYKNILKLD  587
            ++TG  ++  +I+ HHK+P ++GG+D Y NLI+VS A+H LIHA+   TIE+Y + L+LD
Sbjct  548  AVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLNLD  607

Query  588  KYQIRKINTLRKMVG  602
            + QI K+N LR M  
Sbjct  608  NKQIEKLNKLRSMAE  622

30) CKR_0515 in NC_011837


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  467 bits (1760),  Expect = 1e-132, Method: Compositional matrix adjust.
 Identities = 300/615 (49%), Positives = 441/615 (72%), Gaps = 22/615 (3%)

Query  7    KHEKRQKLRNSEYYDMQKYFDTLYEESNKGKKFKNLLTLICDERNIFLAYRNIKKNKGSK  66
            +  K++K+RNSEYYDM+  FD LY ES+K+K F++L+ +I  E NI LAYR IKKN GS 
Sbjct  11   RKSKQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSD  70

Query  67   TQGVNTNTIMDIGEENPDELAIYVRERLINYKPQPVRRVEIPKPNGKMRPLGIPTIEDRI  126
            T GV+  TI D++  + +E    +R ++ NY P PVRRVEIPKPNGK RPLGIPTI DRI
Sbjct  71   TSGVDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRI  130

Query  127  IQQCIKQVLEPICEAKFHKDSYGFRPNRSTHHAIARTYSLANINKLTYVVDIDIKGFFDN  186
            +QQCI QV+EPICEAKF  +S GFRPNRS++ AIA+   L +++ L  VVD+DIKGFFDN
Sbjct  131  VQQCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDN  190

Query  187  VNHSKLLKQMWTMGIQDKNLLCVISKMLKAEI----KGVGIPNKGTPQGGILSPLLSNIV  242
            ++H+KL++Q+W++GI+DK+LLC+I  MLKA +         P +GTPQGGILSPLL+NIV
Sbjct  191  ISHTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIV  250

Query  243  LNELDWWISNQWQTL--KSKFPYKREI-------FKYQALKRSKLKEVYIVRYADDFKLF  293
            LNELDWWI++QW+ +  K+KF  + +          Y+AL+RS+LKE+  VRYADDFK+F
Sbjct  251  LNELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIF  310

Query  294  CRSYNNAKKIFKAVTMWLKERLGLEINEEKSSIVNLKQKYSEflgfkfklksknkkHVIT  353
            C + ++A + +KA  +WLK+RLGLEI+ +KS +VNLK++YS+FLGFK+K++ K KK V+ 
Sbjct  311  CATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVR  370

Query  354  SNVSDKAKERIRKTLIDRVKQIQKRANASVA----SKYNATVLGMHNYYKVATEVNIDFS  409
            S++SDKA  + +  + + VK++   ++ +       KYN+ V G+H+YY ++TEV+ DFS
Sbjct  371  SHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFS  430

Query  410  KIAYLVNRVIYNRLRGLSTKKGFKSEAYKKLYGKYN-FKEVS-IAKMTLYPIAGITTKPP  467
            ++A+ +N+ + NRL+G  +KKG   +++ K   KY   +++  +    + P++ + +K +
Sbjct  431  RLAFSINKQLRNRLKGDLSKKGQLRNGFIK--EKYGASRQMRFLHGRPVVPLGYVQSKNA  488

Query  468  LNFPIGVNSYTVEGRNKIHENLKRYNAKLLRYITENPIRGATVEFNDNRISLYISQNGKC  527
             +   ++N YTV GR++IH NL    A +L+ +  NP++G T+E+ DNRISLY +Q GKC
Sbjct  489  QHKRKSINKYTVKGREQIHKNLAIDTATMLW-LMRNPVKGRTIEYADNRISLYAAQYGKC  547

Query  528  GITGKVLEHGEIEVHHKIPKGKGGTDKYKNLIIVSEAIHKLIHATVAETIERYKNILKLD  587
            ++TG  ++  +I+ HHK+P ++GG+D Y NLI+VS A+H LIHA+   TIE+Y + L+LD
Sbjct  548  AVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLNLD  607

Query  588  KYQIRKINTLRKMVG  602
            + QI K+N LR M  
Sbjct  608  NKQIEKLNKLRSMAE  622

31) Desgi_4410 in NC_021184


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  462 bits (1741),  Expect = 3e-131, Method: Compositional matrix adjust.
 Identities = 289/610 (48%), Positives = 430/610 (71%), Gaps = 23/610 (3%)

Query  14   NNEYYDIQEKFDDLYRRSKQGSTFNNLVELIASDQNILLAYRNIKKNKGSKTRGSNRTTI  73
            N+EYYD++  FD LY  SK++ TFN+L+E+I S++NI LAYR IKKN GS T G ++ TI
Sbjct  20   NSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDKRTI  79

Query  74   IDIGKTNPDRLLQYVKNRLQNYSPQPIRRKEIEKEDGRMRPLGIPTIEDRLIQQCIKQVL  133
             D++K + +  ++ +++++ NY P P+RR EI K +G+ RPLGIPTI DR++QQCI QV+
Sbjct  80   ADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQCILQVM  139

Query  134  EPICEAKFYEHSYGFRPNRGTHHAIARVNFLAYKSKLQYVVDIDIKGFFDNVDHAKLMKQ  193
            EPICEAKF E+S GFRPNR+++ AIA+   L     L  VVD+DIKGFFDN+ H+KL++Q
Sbjct  140  EPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISHTKLIRQ  199

Query  194  MWSIGIQDKNLLCIISKMLKAEI----KGIGIPTRGTPQGGILSPLLSNIVLNELDWWIA  249
            +W++GI+DK+LLCII  MLKA +         P+RGTPQGGILSPLL+NIVLNELDWWIA
Sbjct  200  IWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLNELDWWIA  259

Query  250  SQWETMPTKHQYASKSKRV---------RALKTAGLKEVYIVRYADDFKLLCRTRKEAEK  300
            SQWE MPTK ++ ++S+           RAL+ + LKE+  VRYADDFK++C T+ +A +
Sbjct  260  SQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCATHEDAVR  319

Query  301  LFCAVKKWLNERLKLEISPEKSKIVNLKRHYSDFLGVRIKLQEKGQQQVTTSRMTERSVR  360
             + A   WL++RL LEISP+KSK+VNLKR+YSDFLG ++K++ KG++ V  S+M++++ +
Sbjct  320  AYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHMSDKAYK  379

Query  361  KSKDKLKNCVDTL----QRQPTVDNMQKLNACILGLHNYYCVATNVSRDFDKIAFHVDAN  416
            K+ +K+ + V  L    + ++   ++QK N+ + GLH+YYC++T+VS+DF ++AF ++ +
Sbjct  380  KAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLAFSINKQ  439

Query  417  LRNT-RSMTTRRGQLTKAFTQFYGHYTGRP--KFIMGIPLFPIHLVKFKPPPYFNQDKCN  473
            LRN  ++  +++GQL ++F +    Y +    +F+ G P+ P+  V+ K +    +   +
Sbjct  440  LRNRLKGDLSKKGQLRNGFIK--EKYGASRQMRFLHGRPVVPLGYVQSKNAQHKRKSINK  497

Query  474  YTLEGRNMIHKPLQAIDTSVLRYLMEHPVEQESTEYNDNRISLYVSQRGKCFITGLELTT  533
            YT+ GR+ IHK L AIDT+ +  LM +PV   + EY DNRISLY +Q GKC +TG+ + +
Sbjct  498  YTVKGREQIHKNL-AIDTATMLWLMRNPVKGRTIEYADNRISLYAAQYGKCAVTGIPMNS  556

Query  534  FTAEAHRKTPKGNGGTDEYGNLVIVVPEVHRLIHALDEETVQKCLLALTNSNINYKRLNQ  593
               + H+K P +NGG+DEY+NL++V   VH LIHA  E T++K L +L   N +  +LN+
Sbjct  557  HDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLNLDNKQIEKLNK  616

Query  594  LRKMVGNSEI  603
            LR M   + I
Sbjct  617  LRSMAEMPPI  626

32) PPSC2_p0117 in NC_014628


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  461 bits (1738),  Expect = 4e-131, Method: Compositional matrix adjust.
 Identities = 277/502 (56%), Positives = 380/502 (76%), Gaps = 4/502 (0%)

Query  3    DRIIQQCILQVLEPIGEAKFHVRSNGFRPNRSTEHALAQCYKMAQQQNLHFVVDIDIKGF  62
            DRI+QQCILQV+EPI EAKF   SNGFRPNRS+E A+AQC ++ Q Q+L  VVD+DIKGF
Sbjct  128  DRIVQQCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGF  187

Query  63   FDNVNHGKLLKQIWAMGIQDKNLLCIISKMLKAKVVMPDGTTVEVNKGTPQGGILSPLLS  122
            FDN++H KL++QIWA+GI+DK+LLCII  MLKA VV+P+G      +GTPQGGILSPLL+
Sbjct  188  FDNISHTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLA  247

Query  123  NIVLNELDWWIASNREEMPTRTSINE-IRANGTLDRSNKYKALRKSNLKECFMVRYADDF  181
            NIVLNELDWWIAS++EEMPT+T ++    A+GT  +S+ Y+ALR+S LKE   VRYADDF
Sbjct  248  NIVLNELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDF  307

Query  182  KIFCPDYKTATRIFHATKLWLRDRLHLEISEEKSKIVNLKKEYSEFLGFEMKVIKHGNKY  241
            KIFC+    A R + AT LWL+DRL LEIS +KSK+VNLK++YS+FLGF +KV K G+KY
Sbjct  308  KIFCATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKY  367

Query  242  KVKSHICKKAKERIANELKEIIKQIKYPKGDLDELRKIGLYNSKVIGIHQYYKIATMVSQ  301
             V+SH+  KA  +  + + E +K++ Y+ +D  ++ ++  YNS V G+H+YY I+T VS+
Sbjct  368  VVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSH  427

Query  302  DLSEIAYQIKGSLENNKLKKRISKTGA-TQGYIKEVYGQSQQLRYIRNTPLVPLAYITHQ  360
            D+S +A+ I+  L  N+LK  +SK G   +G+IKE YG S+Q+R+++  P+VPL+Y+  +
Sbjct  428  DFSRLAFSINKQL-RNRLKGDLSKKGQLRNGFIKEKYGASRQMRFLHGRPVVPLGYVQSK  486

Query  361  SPMFKRREINKYTPSGRAFIHKQLESVDLGTLKWLMQNPVKQRSVEYNDNRLSLYSAQKG  420
            ++  KR+ INKYT  GR  IHK+L ++D +T+ WLM+NPVK R++EY DNR+SLY+AQ G
Sbjct  487  NAQHKRKSINKYTVKGREQIHKNL-AIDTATMLWLMRNPVKGRTIEYADNRISLYAAQYG  545

Query  421  RCAVTGNLLMPFDIHRHHKVPLDSGGTDAYSNLVLISREVHELIHAKLSEAINAYMTKLN  480
            +CAVTG  + + DIH HHKVP+ +GG+D Y+NL+L+S+ VH LIHA    +I+ Y+  LN
Sbjct  546  KCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLN  605

Query  481  LTQPQLRKLNKLRIIIGNEEII  502
            L + Q+ KLNKLR +     II
Sbjct  606  LDNKQIEKLNKLRSMAEMPPII  627

33) CLJ_0278 in NC_012654


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  459 bits (1729),  Expect = 3e-130, Method: Compositional matrix adjust.
 Identities = 302/603 (51%), Positives = 433/603 (72%), Gaps = 12/603 (1%)

Query  22   EYYDMQSIFDELYKQSKDGKQFKNLIKTITSKENILLAYRNIKKNDGSHTKGTNHKTIND  81
            EYYDM++ FD LY +SK +K F++L+  I S ENI LAYR IKKN GS+T G + +TI D
Sbjct  22   EYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDKRTIAD  81

Query  82   IAGESEDEIIEYVRKRLNKFYPHSVKRIYIPKNNGDKRPLGIPTIEDRLIQRSILQVLEP  141
            +A  SE+E +  +RK+++++ P +V+R+ IPK NG  RPLGIPTI DR++Q+ ILQV+EP
Sbjct  82   LAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQCILQVMEP  141

Query  142  ICEAKFHPHSYGFRPNRSTEHAIARAMTLINMNKLHYVVDVDIKGFFDNVNHGKLLKQLW  201
            ICEAKF  +S GFRPNRS+E AIA+ M LI+++ L  VVD+DIKGFFDN++H KL++Q+W
Sbjct  142  ICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISHTKLIRQIW  201

Query  202  TlgikdkklikiislmlkAQI--KDGSMITNPVKGTPQGGIISPLLANVVLNELDWWISS  259
            +LGI+DKKL+ II  MLKA +   +G   T P +GTPQGGI+SPLLAN+VLNELDWWI+S
Sbjct  202  ALGIRDKKLLCIIKEMLKAPVVLPNGEK-TYPARGTPQGGILSPLLANIVLNELDWWIAS  260

Query  260  QWETFETKHNYSKLRTFKNGTTTIDKSHKYRALRNGKLKEIYIVRYADDFKVFCKNPKDA  319
            QWE   TK ++ K R+  +GT    KSH YRALR ++LKE+  VRYADDFK+FC    DA
Sbjct  261  QWEEMPTKTKF-KTRSNAQGTEI--KSHAYRALRRSRLKEMHAVRYADDFKIFCATHEDA  317

Query  320  EKIFIAIKLWLKERLDLETSPEKSKVTNLRKHPTEFLGFELKAEKKRKKYVCQSHVSKKA  379
             + + A  LWLK+RL+LE SP+KSKV NL+++ ++FLGF LK  KK KKYV +SH+S KA
Sbjct  318  VRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHMSDKA  377

Query  380  KRLIQEKIKAKIKELQKCPAKSN---NANMYNSSILGMHNYYKIATKVSNDFHEIAFKVS  436
             +  +EK+   +K L   +  +    + + YNS + G+H+YY I+T VS+DF  +AF ++
Sbjct  378  YKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLAFSIN  437

Query  437  KSLYIRLkttktkSGNKSKAFMKY-YGDYNYKITYIKNIALFPIEGIKTKNAMQFQQDIS  495
            K L  RLK   +K G+  ++F+K  YG    ++ ++   ++ P+  +++KNA + ++ I+
Sbjct  438  KQLRNRLKGDLSKKGQLRNGFIKEKYGASR-QMRFLHGRPVVPLGYVQSKNAQHKRKSIN  496

Query  496  NYTVEGRAKIHKNLKDVDMNIMRYLLENPIKGETLQYNDNRISLYVGQKGKCAITGQKLE  555
            +YTV GR +IHKNL  +D   M  L+ NP+KG T++Y DNRISLY +Q GKCA+TG  ++
Sbjct  497  KYTVKGREQIHKNL-AIDTATMLWLMRNPVKGRTIEYADNRISLYAAQYGKCAVTGIPMN  555

Query  556  IGNMESHHKTSRKQGGTDAYENLIFILSDIHKLIHATLPEIIQKYIRKLNLNKEALDKIN  615
              +++ HHK +  +GG+D Y NLI++   +H LIHA+    I+KY++ LNL++  ++K+N
Sbjct  556  SHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLNLDNKQIEKLN  615

Query  616  KLR  618
            KLR
Sbjct  616  KLR  618

34) CLJ_B3105 in NC_012658


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  459 bits (1729),  Expect = 3e-130, Method: Compositional matrix adjust.
 Identities = 302/603 (51%), Positives = 433/603 (72%), Gaps = 12/603 (1%)

Query  22   EYYDMQSIFDELYKQSKDGKQFKNLIKTITSKENILLAYRNIKKNDGSHTKGTNHKTIND  81
            EYYDM++ FD LY +SK +K F++L+  I S ENI LAYR IKKN GS+T G + +TI D
Sbjct  22   EYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDKRTIAD  81

Query  82   IAGESEDEIIEYVRKRLNKFYPHSVKRIYIPKNNGDKRPLGIPTIEDRLIQRSILQVLEP  141
            +A  SE+E +  +RK+++++ P +V+R+ IPK NG  RPLGIPTI DR++Q+ ILQV+EP
Sbjct  82   LAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQCILQVMEP  141

Query  142  ICEAKFHPHSYGFRPNRSTEHAIARAMTLINMNKLHYVVDVDIKGFFDNVNHGKLLKQLW  201
            ICEAKF  +S GFRPNRS+E AIA+ M LI+++ L  VVD+DIKGFFDN++H KL++Q+W
Sbjct  142  ICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISHTKLIRQIW  201

Query  202  TlgikdkklikiislmlkAQI--KDGSMITNPVKGTPQGGIISPLLANVVLNELDWWISS  259
            +LGI+DKKL+ II  MLKA +   +G   T P +GTPQGGI+SPLLAN+VLNELDWWI+S
Sbjct  202  ALGIRDKKLLCIIKEMLKAPVVLPNGEK-TYPARGTPQGGILSPLLANIVLNELDWWIAS  260

Query  260  QWETFETKHNYSKLRTFKNGTTTIDKSHKYRALRNGKLKEIYIVRYADDFKVFCKNPKDA  319
            QWE   TK ++ K R+  +GT    KSH YRALR ++LKE+  VRYADDFK+FC    DA
Sbjct  261  QWEEMPTKTKF-KTRSNAQGTEI--KSHAYRALRRSRLKEMHAVRYADDFKIFCATHEDA  317

Query  320  EKIFIAIKLWLKERLDLETSPEKSKVTNLRKHPTEFLGFELKAEKKRKKYVCQSHVSKKA  379
             + + A  LWLK+RL+LE SP+KSKV NL+++ ++FLGF LK  KK KKYV +SH+S KA
Sbjct  318  VRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHMSDKA  377

Query  380  KRLIQEKIKAKIKELQKCPAKSN---NANMYNSSILGMHNYYKIATKVSNDFHEIAFKVS  436
             +  +EK+   +K L   +  +    + + YNS + G+H+YY I+T VS+DF  +AF ++
Sbjct  378  YKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLAFSIN  437

Query  437  KSLYIRLkttktkSGNKSKAFMKY-YGDYNYKITYIKNIALFPIEGIKTKNAMQFQQDIS  495
            K L  RLK   +K G+  ++F+K  YG    ++ ++   ++ P+  +++KNA + ++ I+
Sbjct  438  KQLRNRLKGDLSKKGQLRNGFIKEKYGASR-QMRFLHGRPVVPLGYVQSKNAQHKRKSIN  496

Query  496  NYTVEGRAKIHKNLKDVDMNIMRYLLENPIKGETLQYNDNRISLYVGQKGKCAITGQKLE  555
            +YTV GR +IHKNL  +D   M  L+ NP+KG T++Y DNRISLY +Q GKCA+TG  ++
Sbjct  497  KYTVKGREQIHKNL-AIDTATMLWLMRNPVKGRTIEYADNRISLYAAQYGKCAVTGIPMN  555

Query  556  IGNMESHHKTSRKQGGTDAYENLIFILSDIHKLIHATLPEIIQKYIRKLNLNKEALDKIN  615
              +++ HHK +  +GG+D Y NLI++   +H LIHA+    I+KY++ LNL++  ++K+N
Sbjct  556  SHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLNLDNKQIEKLN  615

Query  616  KLR  618
            KLR
Sbjct  616  KLR  618

35) BMQ_1837 in NC_014019


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  457 bits (1723),  Expect = 9e-130, Method: Compositional matrix adjust.
 Identities = 293/633 (47%), Positives = 436/633 (69%), Gaps = 31/633 (4%)

Query  10   KDKKLRHNEYYGTQPVLDDLYQKATRRNSFSKLMPTITSDENILLAFRNIKGNKGSKTSA  69
            K++K+R++EYY+ +  +D LY  + + ++F+ LM  I S+ENI LA+R IK N GS TS+
Sbjct  14   KQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSG  73

Query  70   CDNVNIKDIERMEQSYFLNEVKRRFQNYQPKKVRRKEIPKPNGKTRPLGIPSMWDRIIQQ  129
             D+  I D+ ++ +  ++  ++++F NY+P  VRR EIPKPNGKTRPLGIP++ DRI+QQ
Sbjct  74   VDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQ  133

Query  130  CILQVLEPICEAQFCNRSYGFRPNRSAKHAIADSTKKINQQNLTYVVDVDIKGFFDEVNH  189
            CILQV+EPICEA+F + S GFRPNRSA  AIA+  + I+ Q+L  VVD+DIKGFFD+++H
Sbjct  134  CILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISH  193

Query  190  TKLMRQIWTLGIQDKQLLVIIRKILKAPVQMPDGTTMFPTKGTPQGGILSPLLANINLNE  249
            TKL+RQIW+LGI+DK+LL II+ +LKAPV +P+G   +P++GTPQGGILSPLLANI LNE
Sbjct  194  TKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLNE  253

Query  250  FDWWISKQWETFKARRVKSRYRDGIWSNDPVTAVLS------KHSNMKPMYIVRYADDFK  303
            +DWWI+ QWE   +   K++++   +SN   T + S      ++S +K M  VRYADDFK
Sbjct  254  LDWWIASQWEEMPT---KTKFK--TRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFK  308

Query  304  IFTNTRSNAEKIFKACQMWLEERLKLYISTDKSKVTNLKKQESEFLGFSLkavkkgkrkn  363
            IF  T+ +A + +KA ++WL +RL L IS DKSKV NLK+Q S+FLGF        K ++
Sbjct  309  IFCATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFK------LKVRK  362

Query  364  gkTRYIAETHVSQKALKKTKQDLAKQVKKIQKSPNSIKAIKGITLYNSIVIGKHNYYRIA  423
               +Y+  +H+S+KA KK+ + ++ +VKK+  S++    +  +  YNS+V G H+YY I+
Sbjct  363  KGKKYVVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCIS  422

Query  424  THVSLDFNKMALELDCMMYNRFPKRVRRGKSNTNGYTNIGKYAGEDKGIKPYLKSKMMRY  483
            T+VS DF+++A+ ++  + NR+   + +     NG+ +  KY++          S+ MR+
Sbjct  423  TEVSHDFSRLAFSINKQLRNRLKGDLSKKGQLRNGFIK-EKYGA----------SRQMRF  471

Query  484  LMKCPILPISYVSHKNPVMKKQAINKYTSEGRALIHKNLADITEIELKWLRENPVINERT  543
            L   P++P++YV  KN+  K+++INKYT  GR  IHKNLA I    + WL  NPV     
Sbjct  472  LHGRPVVPLGYVQSKNAQHKRKSINKYTVKGREQIHKNLA-IDTATMLWLMRNPVKG--R  528

Query  544  TVEYNDNRVSLYVAQKGKCSVTGEKLLPWEMHCHHKQLWSETKDDSYKNLTIIKPSVHRL  603
            T+EY DNR+SLY AQ GKC+VTG  + + ++HCHHK   S+   D Y NL ++  +VH L
Sbjct  529  TIEYADNRISLYAAQYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHIL  588

Query  604  IHTTKKETInqllnelklneeqlDRLNKLRKLV  636
            IH++   TI++ L+ L+L++ Q+++LNKLR + 
Sbjct  589  IHASSEPTIEKYLKSLNLDNKQIEKLNKLRSMA  621

36) EC1_04470 in NC_021019


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  444 bits (1674),  Expect = 7e-126, Method: Compositional matrix adjust.
 Identities = 276/626 (45%), Positives = 425/626 (68%), Gaps = 19/626 (3%)

Query  13   LRHAEYYGMQGTFDELYQKSQSGEVFENLMDLILSRDNILLAYRNIKANKGSYTAGTDKK  72
            +R++EYY+M+GTFD LY  S+ +  F++LM++I S +NI LAYR IK N GS T+G DK+
Sbjct  18   IRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDKR  77

Query  73   NITDIGSQTPDDVVKRVR--FIVTGSEHGYRPKPVRRKDIPKPNGKTRPLGIPCIWDRLI  130
             I+D++  + ++ V+ +R  F        Y+P PVRR +IPKPNGKTRPLGIP I DR++
Sbjct  78   TIADLAKLSEEEYVRLIRKQF------SNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIV  131

Query  131  QQCIKQIMEPICEAKFCNNSYGFRPNRSVEHAINRTYTMLQMMNLHYVIEFDIKGFFDNV  190
            QQCI Q+MEPICEAKF +NS GFRPNRS E AI +   ++Q+ +L  V+++DIKGFFDN+
Sbjct  132  QQCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNI  191

Query  191  NHSKLIRQIWSLGIHDKTLIFIIKRILTAPIKMPDNTTVLPNKGTPQGGIISPLLANIVL  250
            +H+KLIRQIW+LGI+DK L+ IIK +L AP+ +P+     P +GTPQGGI+SPLLANIVL
Sbjct  192  SHTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVL  251

Query  251  NELDWWIASQWEENPIAIS-RGRERIIGKTKVFDKSHGYRIMKNTEMKEMHIIRYADDFR  309
            NELDWWIASQWEE P     + R    G      KSH+YR ++ + +KEMH +RYADDF+
Sbjct  252  NELDWWIASQWEEMPTKTKFKTRSNAQGTEI---KSHAYRALRRSRLKEMHAVRYADDFK  308

Query  310  IFCRTKEDAVRTKEAVTAWIEERLKLEVSPEKTRIVNTRKRWSEFLGFKIRVRLKHHKYV  369
            IFC T EDAVR+  A   W+ +RL LE+SP+K+++VN +++ S+FLGFK++VR K  KYV
Sbjct  309  IFCATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYV  368

Query  370  VQSAICDKKVEIERAKLVEQAKNIAKPREKKSCLSEIQLYNSMVLGIQNYYQLATCISID  429
            V+S + DK     + K+ E+ K++A + + ++ + ++Q YNS+V G+++YY    CIS +
Sbjct  369  VRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYY----CISTE  424

Query  430  CRELHRRVMTVLTNRLNTETGSMLKHEGGTITQAEKERFGQSKMIRYVSGIDQMIYPIAF  489
              +   R+   + ++L     + L   G       KE++G S+ +R++ G  + + P+++
Sbjct  425  VSHDFSRLAFSINKQLRNRLKGDLSKKGQLRNGFIKEKYGASRQMRFLHG--RPVVPLGY  482

Query  490  IKNKIPMAKRSIVCSYTKEGRAPIHTELNLNQYVLKGLREKISVGHSTEYHDSKISLFSA  549
            +++K +  KR  +  YT  GR  IH +L ++   +  L  +   G++ EY D++ISL++A
Sbjct  483  VQSKNAQHKRKSINKYTVKGREQIHKNLAIDTATMLWLMRNPVKGRTIEYADNRISLYAA  542

Query  550  QKGKCAISGEEFADAEHVAVWLKVPRALGGFERYKNMVLIHKKYLILLQELPQAVIKDLI  609
            Q GKCA++G    +++++    KVP + GG + Y N++L+ K   IL++  +++ I   +
Sbjct  543  QYGKCAVTGIPM-NSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYL  601

Query  610  KTLNITKKMLVKINSLREQANLSAII  635
            K+LN+ +K + K+N LR  A++++II
Sbjct  602  KSLNLDNKQIEKLNKLRSMAEMPPII  627

37) Halha_0349 in NC_019978


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  442 bits (1666),  Expect = 2e-125, Method: Compositional matrix adjust.
 Identities = 298/633 (48%), Positives = 432/633 (69%), Gaps = 26/633 (4%)

Query  1    MTALRKEQVE-NPKKQKLRNNEYYNTQDIQDMLYRYSKKGYDFKNLMHHIKSKDNILLAY  59
            M  L   Q E ++K++K+RN+EYY+ ++  D LY  SKK+  F++LM+ I S +NI LAY
Sbjct  1    MPVLTSGQQERKSKQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAY  60

Query  60   RNIKKNTGSKTRGTNNKTIKDLEELTTQKLVDYVRNRLEYYIPQSVRRVYIPKPDGRKRP  119
            R IKKNTGS T G +++TI DL  L+ +  V  +R+++  Y P +VRRV IPKP+G+ RP
Sbjct  61   RTIKKNTGSDTSGVDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRP  120

Query  120  LGIPTIEDRLIQQCIKQVLEPICEAKFHNHSYGFRPNRSTKHAIARTMRLINQSKLHYVV  179
            LGIPTI DR++QQCI QV+EPICEAKF ++S GFRPNRS+  AIA+ MRLI+   L  VV
Sbjct  121  LGIPTIVDRIVQQCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVV  180

Query  180  DVDIKGFFDNVDHAKLKKQMWSMGIKDKKLISIIGNMLRAEI---EGEGI-PDKGTPQGG  235
            D+DIKGFFDN+ H+KL +Q+W++GI+DKKL+ II +ML+A +   +GE   P +GTPQGG
Sbjct  181  DLDIKGFFDNISHTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGG  240

Query  236  IISPLLSNIVLNELDWWVSNQWETFETDFKYNQ---------KSNKYQALKKRSNLKEVY  286
            I+SPLL+NIVLNELDWW+++QWE   T  K++          KS+ Y+AL +RS LKE+ 
Sbjct  241  ILSPLLANIVLNELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRAL-RRSRLKEMH  299

Query  287  IVRYADDFKIMCRDYEIASKIKVATIQWLKERLNLDVSKKKTKITNLKRSYTKFLGIKLK  346
             VRYADDFKI C   E A +   AT  WLK+RL L++S  K+K+ NLKR Y+ FLG+KLK
Sbjct  300  AVRYADDFKIFCATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLK  359

Query  347  VVEKGNKYVCKSRIANGVKKKLADKLKRQINNI--KQETTPQ--QVSKLNSMILGMHNYY  402
            V  KG+KYV +S++++   KK  +K+  +++++    +  +Q  Q+ K NS++ G+H+YY
Sbjct  360  VRKKGKKYVVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYY  419

Query  403  SMATHVNIDFSEIAFLVNRTLENRLSPN--RKGTESKAF-KKLYGSYNYKPYCVTGIKIF  459
             ++T+V+ DFS +AF +N+ L NRL  +  +KG   ++F K  YG+     + + G  + 
Sbjct  420  CISTEVSHDFSRLAFSINKQLRNRLKGDLSKKGQLRNGFIKEKYGASRQMRF-LHGRPVV  478

Query  460  PIAGVTTSPPMNFSQDICDYTPKGREKIHKKLKSVSPVVQRYLVENPVQGQSVEYNDNRI  519
            P++ V +  + +  + I  YT KGRE+IHK+L ++       L+ NPV+G+++EY DNRI
Sbjct  479  PLGYVQSKNAQHKRKSINKYTVKGREQIHKNL-AIDTATMLWLMRNPVKGRTIEYADNRI  537

Query  520  ARYSGQNGCCFVTGKPLTIGNIECHHKKPRSMGGKDTYRNLCLVTKNVHKLIHSTKSETI  579
            + Y++Q G C VTG P+   +I+CHHK P S GG D Y NL LV+K VH LIH++   TI
Sbjct  538  SLYAAQYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTI  597

Query  580  KRYYDKVKGYFDEEILSKLNKFRTKAGNDCIEL  612
             +Y   ++  +D+  + KLNK+R+ A    I L
Sbjct  598  EKYLKSLN--LDNKQIEKLNKLRSMAEMPPIIL  628

38) ltrA in NC_018866


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  435 bits (1638),  Expect = 4e-123, Method: Compositional matrix adjust.
 Identities = 268/604 (45%), Positives = 419/604 (70%), Gaps = 19/604 (3%)

Query  9    KLRHNEYYGQQSILDELYERSLKGAKFNKLYEKIVEENNILLAYRNIKANTGSKTEGTDG  68
            K+R++EYY+ ++ +D LY  S K+  FN L E I  E+NI LAYR IK NTGS T G D 
Sbjct  17   KIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDK  76

Query  69   LTIKDIAGMTNQEVITMVKRRLKNFTPQSVRRVEILKDNGQNRPLGIPTMSDRLIQACIY  128
             TI D+A ++++E + ++++++ N+ P +VRRVEI K NG+ RPLGIPT+ DR++Q CI 
Sbjct  77   RTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQCIL  136

Query  129  QILEPICEARFHNHSYGFRPTRRTEHALATMHRMINIQHLHFVVDVDIKGFFDNVDHGKL  188
            Q++EPICEA+F ++S GFRP R +E A+A   R+I++QHL  VVD+DIKGFFDN+ H KL
Sbjct  137  QVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISHTKL  196

Query  189  LKQMWTMGIQDKNLLCIISAMLKAEI----EGIGIPNKGVPQGGLCSPLFSNVVLNELDW  244
            ++Q+W++GI+DK+LLCII  MLKA +         P +G PQGG+ SPL++N+VLNELDW
Sbjct  197  IRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLNELDW  256

Query  245  WISDQWESYETSYPYK-RNEGKIRAIR-------RGSKLKECYIIRYCDDFKIMCPTRDV  296
            WI+ QWE   T   +K R++++   I+       R S+LKE   +RY DDFKI C+T++ 
Sbjct  257  WIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCATHED  316

Query  297  AERMFVAVKLWLKERLNLEISSEKSKITNLRKKSSEFLGFKIKAVVKGRKRVANSNIKPS  356
            A R + A  LWLK+RL LEIS++KSK+ NL+++ S+FLGFK+K   KG+K V  S++   
Sbjct  317  AVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHMSDK  376

Query  357  AVVKIIAKGKDLIKKIQKNSADK----NVSLYNSYVLGTQNYYRIATHCTKDFSKIGYEL  412
            A  K   K  + +KK+  +S D+    ++  YNS V G ++YY I+T+ + DFS++++ +
Sbjct  377  AYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLAFSI  436

Query  413  DRNIKIRWKSISTNKGSPSKLYL-ERYKGYAKKKTYIHGHIIFPMSACKTKNAMNHSKMV  471
            +++++ R K+  ++KG   + ++ E+Y G +++  ++HG+ + P++  ++KNA +  K +
Sbjct  437  NKQLRNRLKGDLSKKGQLRNGFIKEKY-GASRQMRFLHGRPVVPLGYVQSKNAQHKRKSI  495

Query  472  NKFTPEGRKFIHQLIESVSGFEFIYLSKNPVIDRSIEYNDNRISLFSAQGGMCEVLGKRL  531
            NK+T  GR  IH+ + ++     + L +NPV +R+IEY DNRISL++AQ G C V G  +
Sbjct  496  NKYTVKGREQIHKNL-AIDTATMLWLMRNPVKGRTIEYADNRISLYAAQYGKCAVTGIPM  554

Query  532  EVNDFHCHRIIPIIAGGGDKYSNLVIIAPDIHRLIHATKSETIQQILAKLELSKKQIAKV  591
            + +D+HCH+ +P+  GG+D Y+NL++++  +H LIHA+   TI++ L  L+L +KQI K+
Sbjct  555  NSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLNLDNKQIEKL  614

Query  592  NKFR  595
            NK+R
Sbjct  615  NKLR  618

39) DCF50_p1257 in NC_018867


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  435 bits (1638),  Expect = 4e-123, Method: Compositional matrix adjust.
 Identities = 268/604 (45%), Positives = 419/604 (70%), Gaps = 19/604 (3%)

Query  9    KLRHNEYYGQQSILDELYERSLKGAKFNKLYEKIVEENNILLAYRNIKANTGSKTEGTDG  68
            K+R++EYY+ ++ +D LY  S K+  FN L E I  E+NI LAYR IK NTGS T G D 
Sbjct  17   KIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDK  76

Query  69   LTIKDIAGMTNQEVITMVKRRLKNFTPQSVRRVEILKDNGQNRPLGIPTMSDRLIQACIY  128
             TI D+A ++++E + ++++++ N+ P +VRRVEI K NG+ RPLGIPT+ DR++Q CI 
Sbjct  77   RTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQCIL  136

Query  129  QILEPICEARFHNHSYGFRPTRRTEHALATMHRMINIQHLHFVVDVDIKGFFDNVDHGKL  188
            Q++EPICEA+F ++S GFRP R +E A+A   R+I++QHL  VVD+DIKGFFDN+ H KL
Sbjct  137  QVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISHTKL  196

Query  189  LKQMWTMGIQDKNLLCIISAMLKAEI----EGIGIPNKGVPQGGLCSPLFSNVVLNELDW  244
            ++Q+W++GI+DK+LLCII  MLKA +         P +G PQGG+ SPL++N+VLNELDW
Sbjct  197  IRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLNELDW  256

Query  245  WISDQWESYETSYPYK-RNEGKIRAIR-------RGSKLKECYIIRYCDDFKIMCPTRDV  296
            WI+ QWE   T   +K R++++   I+       R S+LKE   +RY DDFKI C+T++ 
Sbjct  257  WIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCATHED  316

Query  297  AERMFVAVKLWLKERLNLEISSEKSKITNLRKKSSEFLGFKIKAVVKGRKRVANSNIKPS  356
            A R + A  LWLK+RL LEIS++KSK+ NL+++ S+FLGFK+K   KG+K V  S++   
Sbjct  317  AVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHMSDK  376

Query  357  AVVKIIAKGKDLIKKIQKNSADK----NVSLYNSYVLGTQNYYRIATHCTKDFSKIGYEL  412
            A  K   K  + +KK+  +S D+    ++  YNS V G ++YY I+T+ + DFS++++ +
Sbjct  377  AYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLAFSI  436

Query  413  DRNIKIRWKSISTNKGSPSKLYL-ERYKGYAKKKTYIHGHIIFPMSACKTKNAMNHSKMV  471
            +++++ R K+  ++KG   + ++ E+Y G +++  ++HG+ + P++  ++KNA +  K +
Sbjct  437  NKQLRNRLKGDLSKKGQLRNGFIKEKY-GASRQMRFLHGRPVVPLGYVQSKNAQHKRKSI  495

Query  472  NKFTPEGRKFIHQLIESVSGFEFIYLSKNPVIDRSIEYNDNRISLFSAQGGMCEVLGKRL  531
            NK+T  GR  IH+ + ++     + L +NPV +R+IEY DNRISL++AQ G C V G  +
Sbjct  496  NKYTVKGREQIHKNL-AIDTATMLWLMRNPVKGRTIEYADNRISLYAAQYGKCAVTGIPM  554

Query  532  EVNDFHCHRIIPIIAGGGDKYSNLVIIAPDIHRLIHATKSETIQQILAKLELSKKQIAKV  591
            + +D+HCH+ +P+  GG+D Y+NL++++  +H LIHA+   TI++ L  L+L +KQI K+
Sbjct  555  NSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLNLDNKQIEKL  614

Query  592  NKFR  595
            NK+R
Sbjct  615  NKLR  618

40) SeseC_00946 in NC_017582


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  423 bits (1592),  Expect = 2e-119, Method: Compositional matrix adjust.
 Identities = 284/623 (46%), Positives = 414/623 (67%), Gaps = 22/623 (3%)

Query  11   RNAERYDAKEIGYQLYEDSLNGKRFDRLMPMIVSEQNIILAYRNICKNNGSKTPGTDGKT  70
            RN+E YD      +LY +S ++K F++LM +I SE+NI LAYR I KN GS T+G D +T
Sbjct  19   RNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDKRT  78

Query  71   IVEIQKLPIEMVIKTIRNKLNYYQPKNVRRVEIPKDNGKTRPLGIPSIWDRLIQQCVLQV  130
            I ++ KL+ E  ++ IR++++ Y+P  VRRVEIPK NGKTRPLGIP+I DR++QQC+LQV
Sbjct  79   IADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQCILQV  138

Query  131  LEPICEAKFHERNNGFRPYRSTQNAIAQCYKMAQIQNLHFVVDVDITGFFDNIDHSKLIR  190
            +EPICEAKF E +NGFRP RS++ AIAQC ++ Q+Q+L  VVD+DI GFFDNI H+KLIR
Sbjct  139  MEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISHTKLIR  198

Query  191  QLWGLGVQDRKLIMIIKQMLKADILFKDIVIT-PETGTPQGGILSPLLANVVLNELDWWV  249
            Q+W+LG++D+KL+ IIK+MLKA +++ +   T P  GTPQGGILSPLLAN+VLNELDWW+
Sbjct  199  QIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLNELDWWI  258

Query  250  ANQWEMFKIKEGSTGYEFTKVDNEGNILTIDRTQKWNKLRAKTGLKEMYITRYADDFKIF  309
            A+QWE    K   T +  T+ + +G  +   +++    LR ++ LKEM   RYADDFKIF
Sbjct  259  ASQWEEMPTK---TKFK-TRSNAQGTEI---KSHAYRALR-RSRLKEMHAVRYADDFKIF  310

Query  310  CRDYATAVKVMKATNLWLAENLHLQTSDEKSGITNLRKNYTTFLGIKFKVVPKGNKWIIR  369
            C     AV+  KAT+LWL + L L+ S +KS + NL+++Y+ FLG+K+KV  KG+K ++R
Sbjct  311  CATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVR  370

Query  370  SHMADESKAKVISKPRSVWKDIKK---PSKQSELDKNISLYNAMVMGMHNYYCMATLVSA  426
            SHM+D +  K   K   V  ++KK   +S ++    ++  YN++V G+H+YYC++T VS 
Sbjct  371  SHMSDKAYKKAHEK---VSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSH  427

Query  427  DFAEIAFKVTGKSNGMNHNRRCFPIEKQGEMTSKYILDKYGKSKQCRWINGRMIVPVGYV  486
            DF+ +AF +  +            + K+G++ + +I +KYG S+Q R ++GR +VP+GYV
Sbjct  428  DFSRLAFSINKQLRNRLKG----DLSKKGQLRNGFIKEKYGASRQMRFLHGRPVVPLGYV  483

Query  487  SYEYPKYKRREVNKYVRKYSDAEN---CISFEVMKYMMENAHLYPTLEMADNALSRYIAQ  543
                ++ KR+ +NKY  K  +  +    I    M  +M N+    T+E ADN +S Y AQ
Sbjct  484  QSKNAQHKRKSINKYTVKGREQIHKNLAIDTATMLWLMRNPVKGRTIEYADNRISLYAAQ  543

Query  544  KGKCAVTHNALTVADMMCEHIKPCKGERNDTYRNLIILSKEVSDLVGEENSNKVSKLLKN  603
             GKCAVT  ++   D+ C+H  P     +D Y NLI++SK V  L+   +   + K LK+
Sbjct  544  YGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKS  603

Query  604  LPLTKEMQDKINKLREHRELEMI  626
            L L +   +K+NKLR   E+  I
Sbjct  604  LNLDNKQIEKLNKLRSMAEMPPI  626

41) SeseC_01915 in NC_017582


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  423 bits (1592),  Expect = 2e-119, Method: Compositional matrix adjust.
 Identities = 284/623 (46%), Positives = 414/623 (67%), Gaps = 22/623 (3%)

Query  11   RNAERYDAKEIGYQLYEDSLNGKRFDRLMPMIVSEQNIILAYRNICKNNGSKTPGTDGKT  70
            RN+E YD      +LY +S ++K F++LM +I SE+NI LAYR I KN GS T+G D +T
Sbjct  19   RNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDKRT  78

Query  71   IVEIQKLPIEMVIKTIRNKLNYYQPKNVRRVEIPKDNGKTRPLGIPSIWDRLIQQCVLQV  130
            I ++ KL+ E  ++ IR++++ Y+P  VRRVEIPK NGKTRPLGIP+I DR++QQC+LQV
Sbjct  79   IADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQCILQV  138

Query  131  LEPICEAKFHERNNGFRPYRSTQNAIAQCYKMAQIQNLHFVVDVDITGFFDNIDHSKLIR  190
            +EPICEAKF E +NGFRP RS++ AIAQC ++ Q+Q+L  VVD+DI GFFDNI H+KLIR
Sbjct  139  MEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISHTKLIR  198

Query  191  QLWGLGVQDRKLIMIIKQMLKADILFKDIVIT-PETGTPQGGILSPLLANVVLNELDWWV  249
            Q+W+LG++D+KL+ IIK+MLKA +++ +   T P  GTPQGGILSPLLAN+VLNELDWW+
Sbjct  199  QIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLNELDWWI  258

Query  250  ANQWEMFKIKEGSTGYEFTKVDNEGNILTIDRTQKWNKLRAKTGLKEMYITRYADDFKIF  309
            A+QWE    K   T +  T+ + +G  +   +++    LR ++ LKEM   RYADDFKIF
Sbjct  259  ASQWEEMPTK---TKFK-TRSNAQGTEI---KSHAYRALR-RSRLKEMHAVRYADDFKIF  310

Query  310  CRDYATAVKVMKATNLWLAENLHLQTSDEKSGITNLRKNYTTFLGIKFKVVPKGNKWIIR  369
            C     AV+  KAT+LWL + L L+ S +KS + NL+++Y+ FLG+K+KV  KG+K ++R
Sbjct  311  CATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVR  370

Query  370  SHMADESKAKVISKPRSVWKDIKK---PSKQSELDKNISLYNAMVMGMHNYYCMATLVSA  426
            SHM+D +  K   K   V  ++KK   +S ++    ++  YN++V G+H+YYC++T VS 
Sbjct  371  SHMSDKAYKKAHEK---VSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSH  427

Query  427  DFAEIAFKVTGKSNGMNHNRRCFPIEKQGEMTSKYILDKYGKSKQCRWINGRMIVPVGYV  486
            DF+ +AF +  +            + K+G++ + +I +KYG S+Q R ++GR +VP+GYV
Sbjct  428  DFSRLAFSINKQLRNRLKG----DLSKKGQLRNGFIKEKYGASRQMRFLHGRPVVPLGYV  483

Query  487  SYEYPKYKRREVNKYVRKYSDAEN---CISFEVMKYMMENAHLYPTLEMADNALSRYIAQ  543
                ++ KR+ +NKY  K  +  +    I    M  +M N+    T+E ADN +S Y AQ
Sbjct  484  QSKNAQHKRKSINKYTVKGREQIHKNLAIDTATMLWLMRNPVKGRTIEYADNRISLYAAQ  543

Query  544  KGKCAVTHNALTVADMMCEHIKPCKGERNDTYRNLIILSKEVSDLVGEENSNKVSKLLKN  603
             GKCAVT  ++   D+ C+H  P     +D Y NLI++SK V  L+   +   + K LK+
Sbjct  544  YGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKS  603

Query  604  LPLTKEMQDKINKLREHRELEMI  626
            L L +   +K+NKLR   E+  I
Sbjct  604  LNLDNKQIEKLNKLRSMAEMPPI  626

42) BMB171_P0059 in NC_014172


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  419 bits (1576),  Expect = 4e-118, Method: Compositional matrix adjust.
 Identities = 289/624 (47%), Positives = 423/624 (68%), Gaps = 22/624 (3%)

Query  6    EMERKPKKHKKLRFNEYYDTQQLFDDLYNRSSKGEIFKNLISLIMSEENIKLAYRNIKRN  65
            + ERK+K ++K+R +EYYD +  FD LY  S K+  F++L+ +I SEENIKLAYR IK+N
Sbjct  8    QQERKSK-QRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKN  66

Query  66   KGSYTKGSNDTTILEIAEQNLTTFVAKVQKALENYNPKPIRRVYIPKRNGDKRPLGIPTM  125
             GS T G +  TI ++A  +   +V  ++K + NY+P P+RRV IPK NG  RPLGIPT+
Sbjct  67   TGSDTSGVDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTI  126

Query  126  EDRIVQQCIKQILEPICEAKFYNHSYGFRPNRNAKHAIVRAMSLMNISKFHYVVDIDIKG  185
             DRIVQQCI Q++EPICEAKF ++S GFRPNR+A  AI + M L+++  +  VVD+DIKG
Sbjct  127  VDRIVQQCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKG  186

Query  186  FFDNVNHGKLLKQIWSLGIRDksllsiiskilkTEI--ENVGKM--EKGTPQGGIISPLL  241
            FFDN++H KL++QIW+LGIRDK LL II  +LK+ +   N  K    +GTPQGGI+SPLL
Sbjct  187  FFDNISHTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLL  246

Query  242  SNIVLNELDWWISSQWETMITRHNYESIDKRNNTIIRSHKYTALRRTSNLKEMFLVRYAD  301
            +NIVLNELDWWI+SQWE M T+ ++ +  + + T I+SH Y ALRR S LKEM  VRYAD
Sbjct  247  ANIVLNELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRR-SRLKEMHAVRYAD  305

Query  302  DFKIFCKDFNSAQKTLIAVKKWLKNRLGLEVNNEKSKVTNLRRNYTEFLGFklkvvkkka  361
            DFKIFC   + A ++  A   WLK+RLGLE++ +KSKV NL+R+Y++FLGF    +K + 
Sbjct  306  DFKIFCATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGF---KLKVRK  362

Query  362  kktdyvvkSHITEQAKNNITEKYKKAIKRIKVRPHAD----EVRLLNSKILGFHNYYNIA  417
            K   YVV+SH++++A ++  EK    +K++   ++ +    +++  NS + G+H+YY I+
Sbjct  363  KGKKYVVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCIS  422

Query  418  TMVNKDFADIYYKTKNFVYNRLHRISSLKFKGGETPPTFLKYYGKYNF--KTYYIMEKPI  475
            T V+ DF+ + +  ++ + NRL   + L  K G+    F+K   KY    +  ++  +P+
Sbjct  423  TEVSHDFSRLAFSINKQLRNRLK--GDLS-KKGQLRNGFIK--EKYGASRQMRFLHGRPV  477

Query  476  YPIAGITHKSAKALNKEVNSYTERGRRLIHDRLKSINITILRYLMENPIIDQSIELNDNR  535
             P++ +  K+A+   K +N YT +GR  IH  L +I+ + +  LM NP+ +++IE  DNR
Sbjct  478  VPLGYVQSKNAQHKRKSINKYTVKGREQIHKNL-AIDTATMLWLMRNPVKGRTIEYADNR  536

Query  536  ISLYVGQNGKCAITKEPLEIGDMEVHHIIPKSKGGTDEYVNLIFVRSDIHKLFHAKKKET  595
            ISLY +Q GKCA+T  P++  D++ HH +P S+GG+DEY NLI+V   +H L+HA    T
Sbjct  537  ISLYAAQYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPT  596

Query  596  INYYLDKIGILSRSMIRKINKMRT  619
            I+ YL  +  L    I K+NK+R+
Sbjct  597  IEKYLKSLN-LDNKQIEKLNKLRS  619

43) CT43_P281100 in NC_017203


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  418 bits (1575),  Expect = 4e-118, Method: Compositional matrix adjust.
 Identities = 280/626 (45%), Positives = 428/626 (69%), Gaps = 29/626 (4%)

Query  3    KKTKLRHNEYYNMQSKYDELYSSSLNGNNFYKLINIIGSEENIRLAYRNIKTNKGSKTPG  62
            K+ K+R++EYY+M++ +D LY+ S +++ F  L++II SEENI+LAYR IK N GS T+G
Sbjct  14   KQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSG  73

Query  63   VDNLTIKDIWHLNDTKIIHEVRKRLGDYKPQAVKRVFIPKEGSDKKRPLGIPTIWDRLVQ  122
            VD+ TI D+  L++   ++ +RK++++Y P +V+RV IPK  + K RPLGIPTI DR+VQ
Sbjct  74   VDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNG-KTRPLGIPTIVDRIVQ  132

Query  123  QSILQVLEPIYEAKFHNHSYGFRPNRSAHHALSRVVSLINIGNQHYCVDIDIKGFFDNVD  182
            Q ILQV+EPI EAKF ++S GFRPNRSA+ A+++ + LI++ +    VD+DIKGFFDN+ 
Sbjct  133  QCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNIS  192

Query  183  HGKLLKQMWTLGIRDKSLLCVISKILKSEI---EGEGI-PSKGTPQGGIISPLLSNIVLN  238
            H KL++Q+W+LGIRDK LLC+I  +LK+ +   +GE   P++GTPQGGI+SPLL+NIVLN
Sbjct  193  HTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLN  252

Query  239  ELDWWVSSQWET------YK----PHRISTKHLGFRQYARKYTNLKCGYIVRYADDFKIM  288
            ELDWW++SQWE       +K    ++    K  ++R   R  + LK    VRYADDFKI 
Sbjct  253  ELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRR--SRLKEMHAVRYADDFKIF  310

Query  289  CRTYEEAQRFYHATVDFLQSRLGLEINPDKSKVVNLKKNASDFLGFKIKVVQQGKAKFGY  348
            C T E+A R Y AT   L+ RLGLEI+PDKSKVVNLK++ SDFLGFK+KV ++GK    Y
Sbjct  311  CATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKK---Y  367

Query  349  IAKTSMSDKAVTKTKRLLKEKIKDIQKVPTSES----VNKFNIALIGVQNYYKYAVTIYM  404
            + ++ MSDKA  K+   + E +K +   +  ++    ++K+N  + G+++YY  +  +  
Sbjct  368  VVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSH  427

Query  405  DLTVVKYTLWKTIRVRLRYKMKHIKFCNTSANFKKKARGIQPNSKIYVVQRTPLLPITGV  464
            D++ + +++ K +R RL+  +   K  +    F K   G   + ++  ++  P++P+  V
Sbjct  428  DFSRLAFSINKQLRNRLKGDLS--KKGQLRNGFIKEKYGASRQMRF--LHGRPVVPLGYV  483

Query  465  HHKNPWNFSQVVCNYTEKGRNKVHSNLRAIPKDVLNQVMNTYSKSRSIEYNDNRISKYVA  524
            + KN+ +  + + +YT KGR+++H NL AI    +  +M    K+R+IEY DNRIS Y A
Sbjct  484  QSKNAQHKRKSINKYTVKGREQIHKNL-AIDTATMLWLMRNPVKGRTIEYADNRISLYAA  542

Query  525  QYGKCYITGEEIGVDRVHCHHIIPINQGGNDKYNNLVIVDWFIHKLIHMTNHTKIKRYLR  584
            QYGKC +TG  +  + +HCHH +P+++GG+D Y NL++V   +H LIH +++  I +YL+
Sbjct  543  QYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLK  602

Query  585  SFNLNEKQMDKLNVLRTKAGNEPIVI  610
            S+NL++KQ++KLN LR+ A   PI++
Sbjct  603  SLNLDNKQIEKLNKLRSMAEMPPIIL  628

44) CT43_P83085 in NC_017206


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  418 bits (1575),  Expect = 4e-118, Method: Compositional matrix adjust.
 Identities = 280/626 (45%), Positives = 428/626 (69%), Gaps = 29/626 (4%)

Query  3    KKTKLRHNEYYNMQSKYDELYSSSLNGNNFYKLINIIGSEENIRLAYRNIKTNKGSKTPG  62
            K+ K+R++EYY+M++ +D LY+ S +++ F  L++II SEENI+LAYR IK N GS T+G
Sbjct  14   KQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSG  73

Query  63   VDNLTIKDIWHLNDTKIIHEVRKRLGDYKPQAVKRVFIPKEGSDKKRPLGIPTIWDRLVQ  122
            VD+ TI D+  L++   ++ +RK++++Y P +V+RV IPK  + K RPLGIPTI DR+VQ
Sbjct  74   VDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNG-KTRPLGIPTIVDRIVQ  132

Query  123  QSILQVLEPIYEAKFHNHSYGFRPNRSAHHALSRVVSLINIGNQHYCVDIDIKGFFDNVD  182
            Q ILQV+EPI EAKF ++S GFRPNRSA+ A+++ + LI++ +    VD+DIKGFFDN+ 
Sbjct  133  QCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNIS  192

Query  183  HGKLLKQMWTLGIRDKSLLCVISKILKSEI---EGEGI-PSKGTPQGGIISPLLSNIVLN  238
            H KL++Q+W+LGIRDK LLC+I  +LK+ +   +GE   P++GTPQGGI+SPLL+NIVLN
Sbjct  193  HTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLN  252

Query  239  ELDWWVSSQWET------YK----PHRISTKHLGFRQYARKYTNLKCGYIVRYADDFKIM  288
            ELDWW++SQWE       +K    ++    K  ++R   R  + LK    VRYADDFKI 
Sbjct  253  ELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRR--SRLKEMHAVRYADDFKIF  310

Query  289  CRTYEEAQRFYHATVDFLQSRLGLEINPDKSKVVNLKKNASDFLGFKIKVVQQGKAKFGY  348
            C T E+A R Y AT   L+ RLGLEI+PDKSKVVNLK++ SDFLGFK+KV ++GK    Y
Sbjct  311  CATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKK---Y  367

Query  349  IAKTSMSDKAVTKTKRLLKEKIKDIQKVPTSES----VNKFNIALIGVQNYYKYAVTIYM  404
            + ++ MSDKA  K+   + E +K +   +  ++    ++K+N  + G+++YY  +  +  
Sbjct  368  VVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSH  427

Query  405  DLTVVKYTLWKTIRVRLRYKMKHIKFCNTSANFKKKARGIQPNSKIYVVQRTPLLPITGV  464
            D++ + +++ K +R RL+  +   K  +    F K   G   + ++  ++  P++P+  V
Sbjct  428  DFSRLAFSINKQLRNRLKGDLS--KKGQLRNGFIKEKYGASRQMRF--LHGRPVVPLGYV  483

Query  465  HHKNPWNFSQVVCNYTEKGRNKVHSNLRAIPKDVLNQVMNTYSKSRSIEYNDNRISKYVA  524
            + KN+ +  + + +YT KGR+++H NL AI    +  +M    K+R+IEY DNRIS Y A
Sbjct  484  QSKNAQHKRKSINKYTVKGREQIHKNL-AIDTATMLWLMRNPVKGRTIEYADNRISLYAA  542

Query  525  QYGKCYITGEEIGVDRVHCHHIIPINQGGNDKYNNLVIVDWFIHKLIHMTNHTKIKRYLR  584
            QYGKC +TG  +  + +HCHH +P+++GG+D Y NL++V   +H LIH +++  I +YL+
Sbjct  543  QYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLK  602

Query  585  SFNLNEKQMDKLNVLRTKAGNEPIVI  610
            S+NL++KQ++KLN LR+ A   PI++
Sbjct  603  SLNLDNKQIEKLNKLRSMAEMPPIIL  628

45) H175_85p067 in NC_020383


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  418 bits (1575),  Expect = 4e-118, Method: Compositional matrix adjust.
 Identities = 280/626 (45%), Positives = 428/626 (69%), Gaps = 29/626 (4%)

Query  3    KKTKLRHNEYYNMQSKYDELYSSSLNGNNFYKLINIIGSEENIRLAYRNIKTNKGSKTPG  62
            K+ K+R++EYY+M++ +D LY+ S +++ F  L++II SEENI+LAYR IK N GS T+G
Sbjct  14   KQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSG  73

Query  63   VDNLTIKDIWHLNDTKIIHEVRKRLGDYKPQAVKRVFIPKEGSDKKRPLGIPTIWDRLVQ  122
            VD+ TI D+  L++   ++ +RK++++Y P +V+RV IPK  + K RPLGIPTI DR+VQ
Sbjct  74   VDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNG-KTRPLGIPTIVDRIVQ  132

Query  123  QSILQVLEPIYEAKFHNHSYGFRPNRSAHHALSRVVSLINIGNQHYCVDIDIKGFFDNVD  182
            Q ILQV+EPI EAKF ++S GFRPNRSA+ A+++ + LI++ +    VD+DIKGFFDN+ 
Sbjct  133  QCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNIS  192

Query  183  HGKLLKQMWTLGIRDKSLLCVISKILKSEI---EGEGI-PSKGTPQGGIISPLLSNIVLN  238
            H KL++Q+W+LGIRDK LLC+I  +LK+ +   +GE   P++GTPQGGI+SPLL+NIVLN
Sbjct  193  HTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLN  252

Query  239  ELDWWVSSQWET------YK----PHRISTKHLGFRQYARKYTNLKCGYIVRYADDFKIM  288
            ELDWW++SQWE       +K    ++    K  ++R   R  + LK    VRYADDFKI 
Sbjct  253  ELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRR--SRLKEMHAVRYADDFKIF  310

Query  289  CRTYEEAQRFYHATVDFLQSRLGLEINPDKSKVVNLKKNASDFLGFKIKVVQQGKAKFGY  348
            C T E+A R Y AT   L+ RLGLEI+PDKSKVVNLK++ SDFLGFK+KV ++GK    Y
Sbjct  311  CATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKK---Y  367

Query  349  IAKTSMSDKAVTKTKRLLKEKIKDIQKVPTSES----VNKFNIALIGVQNYYKYAVTIYM  404
            + ++ MSDKA  K+   + E +K +   +  ++    ++K+N  + G+++YY  +  +  
Sbjct  368  VVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSH  427

Query  405  DLTVVKYTLWKTIRVRLRYKMKHIKFCNTSANFKKKARGIQPNSKIYVVQRTPLLPITGV  464
            D++ + +++ K +R RL+  +   K  +    F K   G   + ++  ++  P++P+  V
Sbjct  428  DFSRLAFSINKQLRNRLKGDLS--KKGQLRNGFIKEKYGASRQMRF--LHGRPVVPLGYV  483

Query  465  HHKNPWNFSQVVCNYTEKGRNKVHSNLRAIPKDVLNQVMNTYSKSRSIEYNDNRISKYVA  524
            + KN+ +  + + +YT KGR+++H NL AI    +  +M    K+R+IEY DNRIS Y A
Sbjct  484  QSKNAQHKRKSINKYTVKGREQIHKNL-AIDTATMLWLMRNPVKGRTIEYADNRISLYAA  542

Query  525  QYGKCYITGEEIGVDRVHCHHIIPINQGGNDKYNNLVIVDWFIHKLIHMTNHTKIKRYLR  584
            QYGKC +TG  +  + +HCHH +P+++GG+D Y NL++V   +H LIH +++  I +YL+
Sbjct  543  QYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLK  602

Query  585  SFNLNEKQMDKLNVLRTKAGNEPIVI  610
            S+NL++KQ++KLN LR+ A   PI++
Sbjct  603  SLNLDNKQIEKLNKLRSMAEMPPIIL  628

46) H175_285p107 in NC_020384


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  418 bits (1575),  Expect = 4e-118, Method: Compositional matrix adjust.
 Identities = 280/626 (45%), Positives = 428/626 (69%), Gaps = 29/626 (4%)

Query  3    KKTKLRHNEYYNMQSKYDELYSSSLNGNNFYKLINIIGSEENIRLAYRNIKTNKGSKTPG  62
            K+ K+R++EYY+M++ +D LY+ S +++ F  L++II SEENI+LAYR IK N GS T+G
Sbjct  14   KQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSG  73

Query  63   VDNLTIKDIWHLNDTKIIHEVRKRLGDYKPQAVKRVFIPKEGSDKKRPLGIPTIWDRLVQ  122
            VD+ TI D+  L++   ++ +RK++++Y P +V+RV IPK  + K RPLGIPTI DR+VQ
Sbjct  74   VDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNG-KTRPLGIPTIVDRIVQ  132

Query  123  QSILQVLEPIYEAKFHNHSYGFRPNRSAHHALSRVVSLINIGNQHYCVDIDIKGFFDNVD  182
            Q ILQV+EPI EAKF ++S GFRPNRSA+ A+++ + LI++ +    VD+DIKGFFDN+ 
Sbjct  133  QCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNIS  192

Query  183  HGKLLKQMWTLGIRDKSLLCVISKILKSEI---EGEGI-PSKGTPQGGIISPLLSNIVLN  238
            H KL++Q+W+LGIRDK LLC+I  +LK+ +   +GE   P++GTPQGGI+SPLL+NIVLN
Sbjct  193  HTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLN  252

Query  239  ELDWWVSSQWET------YK----PHRISTKHLGFRQYARKYTNLKCGYIVRYADDFKIM  288
            ELDWW++SQWE       +K    ++    K  ++R   R  + LK    VRYADDFKI 
Sbjct  253  ELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRR--SRLKEMHAVRYADDFKIF  310

Query  289  CRTYEEAQRFYHATVDFLQSRLGLEINPDKSKVVNLKKNASDFLGFKIKVVQQGKAKFGY  348
            C T E+A R Y AT   L+ RLGLEI+PDKSKVVNLK++ SDFLGFK+KV ++GK    Y
Sbjct  311  CATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKK---Y  367

Query  349  IAKTSMSDKAVTKTKRLLKEKIKDIQKVPTSES----VNKFNIALIGVQNYYKYAVTIYM  404
            + ++ MSDKA  K+   + E +K +   +  ++    ++K+N  + G+++YY  +  +  
Sbjct  368  VVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSH  427

Query  405  DLTVVKYTLWKTIRVRLRYKMKHIKFCNTSANFKKKARGIQPNSKIYVVQRTPLLPITGV  464
            D++ + +++ K +R RL+  +   K  +    F K   G   + ++  ++  P++P+  V
Sbjct  428  DFSRLAFSINKQLRNRLKGDLS--KKGQLRNGFIKEKYGASRQMRF--LHGRPVVPLGYV  483

Query  465  HHKNPWNFSQVVCNYTEKGRNKVHSNLRAIPKDVLNQVMNTYSKSRSIEYNDNRISKYVA  524
            + KN+ +  + + +YT KGR+++H NL AI    +  +M    K+R+IEY DNRIS Y A
Sbjct  484  QSKNAQHKRKSINKYTVKGREQIHKNL-AIDTATMLWLMRNPVKGRTIEYADNRISLYAA  542

Query  525  QYGKCYITGEEIGVDRVHCHHIIPINQGGNDKYNNLVIVDWFIHKLIHMTNHTKIKRYLR  584
            QYGKC +TG  +  + +HCHH +P+++GG+D Y NL++V   +H LIH +++  I +YL+
Sbjct  543  QYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLK  602

Query  585  SFNLNEKQMDKLNVLRTKAGNEPIVI  610
            S+NL++KQ++KLN LR+ A   PI++
Sbjct  603  SLNLDNKQIEKLNKLRSMAEMPPIIL  628

47) H175_233p185 in NC_020394


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  418 bits (1575),  Expect = 4e-118, Method: Compositional matrix adjust.
 Identities = 280/626 (45%), Positives = 428/626 (69%), Gaps = 29/626 (4%)

Query  3    KKTKLRHNEYYNMQSKYDELYSSSLNGNNFYKLINIIGSEENIRLAYRNIKTNKGSKTPG  62
            K+ K+R++EYY+M++ +D LY+ S +++ F  L++II SEENI+LAYR IK N GS T+G
Sbjct  14   KQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSG  73

Query  63   VDNLTIKDIWHLNDTKIIHEVRKRLGDYKPQAVKRVFIPKEGSDKKRPLGIPTIWDRLVQ  122
            VD+ TI D+  L++   ++ +RK++++Y P +V+RV IPK  + K RPLGIPTI DR+VQ
Sbjct  74   VDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNG-KTRPLGIPTIVDRIVQ  132

Query  123  QSILQVLEPIYEAKFHNHSYGFRPNRSAHHALSRVVSLINIGNQHYCVDIDIKGFFDNVD  182
            Q ILQV+EPI EAKF ++S GFRPNRSA+ A+++ + LI++ +    VD+DIKGFFDN+ 
Sbjct  133  QCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNIS  192

Query  183  HGKLLKQMWTLGIRDKSLLCVISKILKSEI---EGEGI-PSKGTPQGGIISPLLSNIVLN  238
            H KL++Q+W+LGIRDK LLC+I  +LK+ +   +GE   P++GTPQGGI+SPLL+NIVLN
Sbjct  193  HTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLN  252

Query  239  ELDWWVSSQWET------YK----PHRISTKHLGFRQYARKYTNLKCGYIVRYADDFKIM  288
            ELDWW++SQWE       +K    ++    K  ++R   R  + LK    VRYADDFKI 
Sbjct  253  ELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRR--SRLKEMHAVRYADDFKIF  310

Query  289  CRTYEEAQRFYHATVDFLQSRLGLEINPDKSKVVNLKKNASDFLGFKIKVVQQGKAKFGY  348
            C T E+A R Y AT   L+ RLGLEI+PDKSKVVNLK++ SDFLGFK+KV ++GK    Y
Sbjct  311  CATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKK---Y  367

Query  349  IAKTSMSDKAVTKTKRLLKEKIKDIQKVPTSES----VNKFNIALIGVQNYYKYAVTIYM  404
            + ++ MSDKA  K+   + E +K +   +  ++    ++K+N  + G+++YY  +  +  
Sbjct  368  VVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSH  427

Query  405  DLTVVKYTLWKTIRVRLRYKMKHIKFCNTSANFKKKARGIQPNSKIYVVQRTPLLPITGV  464
            D++ + +++ K +R RL+  +   K  +    F K   G   + ++  ++  P++P+  V
Sbjct  428  DFSRLAFSINKQLRNRLKGDLS--KKGQLRNGFIKEKYGASRQMRF--LHGRPVVPLGYV  483

Query  465  HHKNPWNFSQVVCNYTEKGRNKVHSNLRAIPKDVLNQVMNTYSKSRSIEYNDNRISKYVA  524
            + KN+ +  + + +YT KGR+++H NL AI    +  +M    K+R+IEY DNRIS Y A
Sbjct  484  QSKNAQHKRKSINKYTVKGREQIHKNL-AIDTATMLWLMRNPVKGRTIEYADNRISLYAA  542

Query  525  QYGKCYITGEEIGVDRVHCHHIIPINQGGNDKYNNLVIVDWFIHKLIHMTNHTKIKRYLR  584
            QYGKC +TG  +  + +HCHH +P+++GG+D Y NL++V   +H LIH +++  I +YL+
Sbjct  543  QYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLK  602

Query  585  SFNLNEKQMDKLNVLRTKAGNEPIVI  610
            S+NL++KQ++KLN LR+ A   PI++
Sbjct  603  SLNLDNKQIEKLNKLRSMAEMPPIIL  628

48) Halha_0167 in NC_019978


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  417 bits (1568),  Expect = 2e-117, Method: Compositional matrix adjust.
 Identities = 281/616 (46%), Positives = 408/616 (67%), Gaps = 24/616 (3%)

Query  17   LRNNEYYDTQEIQDMLYEYSEKGYNFKSLMQHITSRKNILLAYRNIKKNTGSKTRGTNNK  76
            +RN+EYYD +   D LY  S K+  F+ LM+ I S  NI LAYR IKKNTGS T G +++
Sbjct  18   IRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDKR  77

Query  77   TIKDLEEKSTEELVEYVRNRLEYYVPQSVRRVYIPKPDGRKRPLGIPTIKDRLIQQCIKQ  136
            TI DL   S EE V  +R+++  Y P +VRRV IPKP+G+ RPLGIPTI DR++QQCI Q
Sbjct  78   TIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQCILQ  137

Query  137  VLEPICEAKFHNHSYGFRPNRSTKHAIARIMYLINFSKLHYTVDIDIKSFFDNVDHNKLK  196
            V+EPICEAKF ++S GFRPNRS+  AIA+ M LI+   L   VD+DIK+FFDN+ H KL 
Sbjct  138  VMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISHTKLI  197

Query  197  KQLWSMGIRDKKLISILGNMLEAKI---EGEGV-PEKGTPQGGIISPLLSNIVLNEMDWW  252
            +Q+W++GIRDKKL+ I+ +ML A +   +GE   P +GTPQGGI+SPLL+NIVLNE+DWW
Sbjct  198  RQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLNELDWW  257

Query  253  ISNQWETFKTDYKYNRKGDKIT---------AIKKTNLKEIYIIRYADDFKIMCRDFETA  303
            I++QWE   T  K++ +++            A++++ LKE+  +RYADDFKI C   E A
Sbjct  258  IASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCATHEDA  317

Query  304  SKIKIATIKWLKERLNLEVSEKKTSITNLKKNHTEFLGIKLKVVKKGNKYICRSKVANGV  363
             +   AT  WLK+RL LE+S  K+ + NLK++ ++FLG+KLKV KKG+KY+ RS +++  
Sbjct  318  VRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHMSDKA  377

Query  364  KPKLINKFRNQIQRIRRKTTPK----EVSKLNSMILGMQNYYSMATYVNKDFSDIAFKVN  419
              K  +K  ++++++   +  +    ++ K NS++ G+++YY ++T V+ DFS +AF +N
Sbjct  378  YKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLAFSIN  437

Query  420  RTLRKRLSEILSEKGTESKTFQKFYGEYNYKPH--CVAGIRIFPIAGVTFKAPMNFSQEI  477
            + LR+RL   LS KG   + F K    Y    +   + G  + P++ V  K + +  + I
Sbjct  438  KQLRNRLKGDLSKKGQLRNGFIK--EKYGASRQMRFLHGRPVVPLGYVQSKNAQHKRKSI  495

Query  478  CDYTRIGREKIHKKLRSVSPVVLKYLVENPVRDKSIKYNDNRIARYSGQNGCCFVTGIPL  537
              YT  GRE+IHK+L ++    +  L+ NPV++++I Y DNRI+ Y++Q G C VTGIP+
Sbjct  496  NKYTVKGREQIHKNL-AIDTATMLWLMRNPVKGRTIEYADNRISLYAAQYGKCAVTGIPM  554

Query  538  GIGDIECHHKRPEKDGGKDTYRNLCLVTKDIHKLIHATKKKTIKRYYDKVKCYFDENTLS  597
               DI+CHHK P  +GG D Y NL LV+K +H LIHA+   TI +Y   ++  +D++ + 
Sbjct  555  NSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLN--LDNKQIE  612

Query  598  KLNKLRTKAGNDCIEL  613
            KLNKLR+ A    I L
Sbjct  613  KLNKLRSMAEMPPIIL  628

49) CT43_P127058 in NC_017202


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  409 bits (1540),  Expect = 2e-115, Method: Compositional matrix adjust.
 Identities = 284/637 (45%), Positives = 429/637 (68%), Gaps = 29/637 (4%)

Query  21   PPVNKGRLQPMLKKTKLRHSEYYDMQRKYDELYSNSLNGNNFYKLIDIIGSEENIRLAYR  80
            P +  G+ +   K+ K+R+SEYYDM+  +D LY++S +++ F  L++II SEENI+LAYR
Sbjct  2    PVLTSGQQERKSKQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYR  61

Query  81   NIKTNKGSNTAGVDNLTIKDIWHLNDTKIIHEVRKRLNNYQPQAVKRVLIPKEGSDKKRP  140
             IK N GS+T+GVD+ TI D+  L++   ++ +RK+++NY+P +V+RV IPK  + K RP
Sbjct  62   TIKKNTGSDTSGVDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNG-KTRP  120

Query  141  LGIPTIWDRLVQQSILQVLEPICEAKFHNHSYGFRPNRSTHHALSRVVSLINIGHQHYCV  200
            LGIPTI DR+VQQ ILQV+EPICEAKF ++S GFRPNRS++ A+++ + LI++ H    V
Sbjct  121  LGIPTIVDRIVQQCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVV  180

Query  201  DIDIKGFFDNVCHKKLLRQMWTLGIRDKSLLCVISKILKSEI---EGEGI-PNKGTPQGG  256
            D+DIKGFFDN+ H KL+RQ+W+LGIRDK LLC+I  +LK+ +   +GE   P +GTPQGG
Sbjct  181  DLDIKGFFDNISHTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGG  240

Query  257  IISPLLSNIVLNELDWWISSQWET------YK----PHRISTRHLGFRQYARKYTNLKCG  306
            I+SPLL+NIVLNELDWWI+SQWE       +K    ++    +  ++R   R  + LK  
Sbjct  241  ILSPLLANIVLNELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRR--SRLKEM  298

Query  307  YVVRYADDFKIMCRTYDEAQRFYHATVDFLKSRLGLEInpkkskvvnlkknssvFLGFKI  366
              VRYADDFKI C T ++A R Y AT   LK RLGLEI+P KSKVVNLK++ S FLGFK+
Sbjct  299  HAVRYADDFKIFCATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKL  358

Query  367  KVVKQGKAKFGYIAKTSMSDKAITKAKRQLKERIK----GIQKEPTSEKVTQFNSTLLGI  422
            KV K+GK    Y+ ++ MSDKA  KA  ++ E +K    + + ++   ++ ++NS + G+
Sbjct  359  KVRKKGKK---YVVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGL  415

Query  423  QNYFKYAVTIYMDLTEVNYSLRRVIRTRLRNNMKHMKFCETSVNFKRKTKGIQPNTKIYA  482
            ++Y+  +  +  D++ + +S+ + +R RL+ ++      +    F +   G   + ++  
Sbjct  416  HEYYCISTEVSHDFSRLAFSINKQLRNRLKGDLSKKG--QLRNGFIKEKYGASRQMRF--  471

Query  483  VQNTPLLPVTGIHHKNPWNFSQVICNYTETGRNKVHSNLKAIPKDVLNQVMRTYSKNKSI  542
            ++  P++P+  ++ KN+ +  + I +YT  GR+++H NL AI    +  +MR   K ++I
Sbjct  472  LHGRPVVPLGYVQSKNAQHKRKSINKYTVKGREQIHKNL-AIDTATMLWLMRNPVKGRTI  530

Query  543  EYNDNRISKYVAQYGKCYVTGEEIGIERVHCHHIVPIKQGGDDKYNNLVIVDWFIHKLIH  602
            EY DNRIS Y AQYGKC VTG  +  + +HCHH VP+ +GG D Y NL++V   +H LIH
Sbjct  531  EYADNRISLYAAQYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIH  590

Query  603  MTNLNKITHYLRSFKLNKKQMDKLNVLRTKAGNEPIV  639
             ++   I  YL+S++L++KQ++KLN LR+ A   PI+
Sbjct  591  ASSEPTIEKYLKSLNLDNKQIEKLNKLRSMAEMPPII  627

50) CT43_P127077 in NC_017202


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  409 bits (1540),  Expect = 2e-115, Method: Compositional matrix adjust.
 Identities = 284/637 (45%), Positives = 429/637 (68%), Gaps = 29/637 (4%)

Query  21   PPVNKGRLQPMLKKTKLRHSEYYDMQRKYDELYSNSLNGNNFYKLIDIIGSEENIRLAYR  80
            P +  G+ +   K+ K+R+SEYYDM+  +D LY++S +++ F  L++II SEENI+LAYR
Sbjct  2    PVLTSGQQERKSKQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYR  61

Query  81   NIKTNKGSNTAGVDNLTIKDIWHLNDTKIIHEVRKRLNNYQPQAVKRVLIPKEGSDKKRP  140
             IK N GS+T+GVD+ TI D+  L++   ++ +RK+++NY+P +V+RV IPK  + K RP
Sbjct  62   TIKKNTGSDTSGVDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNG-KTRP  120

Query  141  LGIPTIWDRLVQQSILQVLEPICEAKFHNHSYGFRPNRSTHHALSRVVSLINIGHQHYCV  200
            LGIPTI DR+VQQ ILQV+EPICEAKF ++S GFRPNRS++ A+++ + LI++ H    V
Sbjct  121  LGIPTIVDRIVQQCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVV  180

Query  201  DIDIKGFFDNVCHKKLLRQMWTLGIRDKSLLCVISKILKSEI---EGEGI-PNKGTPQGG  256
            D+DIKGFFDN+ H KL+RQ+W+LGIRDK LLC+I  +LK+ +   +GE   P +GTPQGG
Sbjct  181  DLDIKGFFDNISHTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGG  240

Query  257  IISPLLSNIVLNELDWWISSQWET------YK----PHRISTRHLGFRQYARKYTNLKCG  306
            I+SPLL+NIVLNELDWWI+SQWE       +K    ++    +  ++R   R  + LK  
Sbjct  241  ILSPLLANIVLNELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRR--SRLKEM  298

Query  307  YVVRYADDFKIMCRTYDEAQRFYHATVDFLKSRLGLEInpkkskvvnlkknssvFLGFKI  366
              VRYADDFKI C T ++A R Y AT   LK RLGLEI+P KSKVVNLK++ S FLGFK+
Sbjct  299  HAVRYADDFKIFCATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKL  358

Query  367  KVVKQGKAKFGYIAKTSMSDKAITKAKRQLKERIK----GIQKEPTSEKVTQFNSTLLGI  422
            KV K+GK    Y+ ++ MSDKA  KA  ++ E +K    + + ++   ++ ++NS + G+
Sbjct  359  KVRKKGKK---YVVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGL  415

Query  423  QNYFKYAVTIYMDLTEVNYSLRRVIRTRLRNNMKHMKFCETSVNFKRKTKGIQPNTKIYA  482
            ++Y+  +  +  D++ + +S+ + +R RL+ ++      +    F +   G   + ++  
Sbjct  416  HEYYCISTEVSHDFSRLAFSINKQLRNRLKGDLSKKG--QLRNGFIKEKYGASRQMRF--  471

Query  483  VQNTPLLPVTGIHHKNPWNFSQVICNYTETGRNKVHSNLKAIPKDVLNQVMRTYSKNKSI  542
            ++  P++P+  ++ KN+ +  + I +YT  GR+++H NL AI    +  +MR   K ++I
Sbjct  472  LHGRPVVPLGYVQSKNAQHKRKSINKYTVKGREQIHKNL-AIDTATMLWLMRNPVKGRTI  530

Query  543  EYNDNRISKYVAQYGKCYVTGEEIGIERVHCHHIVPIKQGGDDKYNNLVIVDWFIHKLIH  602
            EY DNRIS Y AQYGKC VTG  +  + +HCHH VP+ +GG D Y NL++V   +H LIH
Sbjct  531  EYADNRISLYAAQYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIH  590

Query  603  MTNLNKITHYLRSFKLNKKQMDKLNVLRTKAGNEPIV  639
             ++   I  YL+S++L++KQ++KLN LR+ A   PI+
Sbjct  591  ASSEPTIEKYLKSLNLDNKQIEKLNKLRSMAEMPPII  627

51) ltrA3 in NC_018877


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  408 bits (1534),  Expect = 7e-115, Method: Compositional matrix adjust.
 Identities = 282/625 (46%), Positives = 424/625 (68%), Gaps = 29/625 (4%)

Query  3    KKTKLRHSEYYDMQRKYDELYSNSLNGNNFYKLIDIIGSEENIRLAYRNIKTNKGSNTAG  62
            K+ K+R+SEYYDM+  +D LY++S +++ F  L++II SEENI+LAYR IK N GS+T+G
Sbjct  14   KQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSG  73

Query  63   VDNLTIKDIWHLNDTKIIHEVRKRLNNYQPQAVKRVLIPKEGSDKKRPLGIPTIWDRLVQ  122
            VD+ TI D+  L++   ++ +RK+++NY+P +V+RV IPK  + K RPLGIPTI DR+VQ
Sbjct  74   VDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNG-KTRPLGIPTIVDRIVQ  132

Query  123  QSILQVLEPICEAKFHNHSYGFRPNRSTHHALSRVVSLINIGHQHYCVDIDIKGFFDNVC  182
            Q ILQV+EPICEAKF ++S GFRPNRS++ A+++ + LI++ H    VD+DIKGFFDN+ 
Sbjct  133  QCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNIS  192

Query  183  HKKLLRQMWTLGIRDKSLLCVISKILKSEI---EGEGI-PNKGTPQGGIISPLLSNIVLN  238
            H KL+RQ+W+LGIRDK LLC+I  +LK+ +   +GE   P +GTPQGGI+SPLL+NIVLN
Sbjct  193  HTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLN  252

Query  239  ELDWWISSQWET------YK----PHRISTRHLGFRQYARKYTNLKCGYVVRYADDFKIM  288
            ELDWWI+SQWE       +K    ++    +  ++R   R  + LK    VRYADDFKI 
Sbjct  253  ELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRR--SRLKEMHAVRYADDFKIF  310

Query  289  CRTYDEAQRFYHATVDFLKSRLGLEInpkkskvvnlkknssvFLGFKIKVVKQGKAKFGY  348
            C T ++A R Y AT   LK RLGLEI+P KSKVVNLK++ S FLGFK+KV K+GK    Y
Sbjct  311  CATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKK---Y  367

Query  349  IAKTSMSDKAITKAKRQLKERIK----GIQKEPTSEKVTQFNSTLLGIQNYFKYAVTIYM  404
            + ++ MSDKA  KA  ++ E +K    + + ++   ++ ++NS + G+++Y+  +  +  
Sbjct  368  VVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSH  427

Query  405  DLTEVNYSLRRVIRTRLRNNMKHMKFCETSVNFKRKTKGIQPNTKIYAVQNTPLLPVTGI  464
            D++ + +S+ + +R RL+ ++      +    F +   G   + ++  ++  P++P+  +
Sbjct  428  DFSRLAFSINKQLRNRLKGDLSKKG--QLRNGFIKEKYGASRQMRF--LHGRPVVPLGYV  483

Query  465  HHKNPWNFSQVICNYTETGRNKVHSNLKAIPKDVLNQVMRTYSKNKSIEYNDNRISKYVA  524
            + KN+ +  + I +YT  GR+++H NL AI    +  +MR   K ++IEY DNRIS Y A
Sbjct  484  QSKNAQHKRKSINKYTVKGREQIHKNL-AIDTATMLWLMRNPVKGRTIEYADNRISLYAA  542

Query  525  QYGKCYVTGEEIGIERVHCHHIVPIKQGGDDKYNNLVIVDWFIHKLIHMTNLNKITHYLR  584
            QYGKC VTG  +  + +HCHH VP+ +GG D Y NL++V   +H LIH ++   I  YL+
Sbjct  543  QYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLK  602

Query  585  SFKLNKKQMDKLNVLRTKAGNEPIV  609
            S++L++KQ++KLN LR+ A   PI+
Sbjct  603  SLNLDNKQIEKLNKLRSMAEMPPII  627

52) ltrA in NC_018879


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  408 bits (1534),  Expect = 7e-115, Method: Compositional matrix adjust.
 Identities = 282/625 (46%), Positives = 424/625 (68%), Gaps = 29/625 (4%)

Query  3    KKTKLRHSEYYDMQRKYDELYSNSLNGNNFYKLIDIIGSEENIRLAYRNIKTNKGSNTAG  62
            K+ K+R+SEYYDM+  +D LY++S +++ F  L++II SEENI+LAYR IK N GS+T+G
Sbjct  14   KQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSG  73

Query  63   VDNLTIKDIWHLNDTKIIHEVRKRLNNYQPQAVKRVLIPKEGSDKKRPLGIPTIWDRLVQ  122
            VD+ TI D+  L++   ++ +RK+++NY+P +V+RV IPK  + K RPLGIPTI DR+VQ
Sbjct  74   VDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNG-KTRPLGIPTIVDRIVQ  132

Query  123  QSILQVLEPICEAKFHNHSYGFRPNRSTHHALSRVVSLINIGHQHYCVDIDIKGFFDNVC  182
            Q ILQV+EPICEAKF ++S GFRPNRS++ A+++ + LI++ H    VD+DIKGFFDN+ 
Sbjct  133  QCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNIS  192

Query  183  HKKLLRQMWTLGIRDKSLLCVISKILKSEI---EGEGI-PNKGTPQGGIISPLLSNIVLN  238
            H KL+RQ+W+LGIRDK LLC+I  +LK+ +   +GE   P +GTPQGGI+SPLL+NIVLN
Sbjct  193  HTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLN  252

Query  239  ELDWWISSQWET------YK----PHRISTRHLGFRQYARKYTNLKCGYVVRYADDFKIM  288
            ELDWWI+SQWE       +K    ++    +  ++R   R  + LK    VRYADDFKI 
Sbjct  253  ELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRR--SRLKEMHAVRYADDFKIF  310

Query  289  CRTYDEAQRFYHATVDFLKSRLGLEInpkkskvvnlkknssvFLGFKIKVVKQGKAKFGY  348
            C T ++A R Y AT   LK RLGLEI+P KSKVVNLK++ S FLGFK+KV K+GK    Y
Sbjct  311  CATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKK---Y  367

Query  349  IAKTSMSDKAITKAKRQLKERIK----GIQKEPTSEKVTQFNSTLLGIQNYFKYAVTIYM  404
            + ++ MSDKA  KA  ++ E +K    + + ++   ++ ++NS + G+++Y+  +  +  
Sbjct  368  VVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSH  427

Query  405  DLTEVNYSLRRVIRTRLRNNMKHMKFCETSVNFKRKTKGIQPNTKIYAVQNTPLLPVTGI  464
            D++ + +S+ + +R RL+ ++      +    F +   G   + ++  ++  P++P+  +
Sbjct  428  DFSRLAFSINKQLRNRLKGDLSKKG--QLRNGFIKEKYGASRQMRF--LHGRPVVPLGYV  483

Query  465  HHKNPWNFSQVICNYTETGRNKVHSNLKAIPKDVLNQVMRTYSKNKSIEYNDNRISKYVA  524
            + KN+ +  + I +YT  GR+++H NL AI    +  +MR   K ++IEY DNRIS Y A
Sbjct  484  QSKNAQHKRKSINKYTVKGREQIHKNL-AIDTATMLWLMRNPVKGRTIEYADNRISLYAA  542

Query  525  QYGKCYVTGEEIGIERVHCHHIVPIKQGGDDKYNNLVIVDWFIHKLIHMTNLNKITHYLR  584
            QYGKC VTG  +  + +HCHH VP+ +GG D Y NL++V   +H LIH ++   I  YL+
Sbjct  543  QYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLK  602

Query  585  SFKLNKKQMDKLNVLRTKAGNEPIV  609
            S++L++KQ++KLN LR+ A   PI+
Sbjct  603  SLNLDNKQIEKLNKLRSMAEMPPII  627

53) CT43_P72011 in NC_017205


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  408 bits (1534),  Expect = 7e-115, Method: Compositional matrix adjust.
 Identities = 282/625 (46%), Positives = 424/625 (68%), Gaps = 29/625 (4%)

Query  3    KKTKLRHSEYYDMQRKYDELYSNSLNGNNFYKLIDIIGSEENIRLAYRNIKTNKGSNTAG  62
            K+ K+R+SEYYDM+  +D LY++S +++ F  L++II SEENI+LAYR IK N GS+T+G
Sbjct  14   KQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSG  73

Query  63   VDNLTIKDIWHLNDTKIIHEVRKRLNNYQPQAVKRVLIPKEGSDKKRPLGIPTIWDRLVQ  122
            VD+ TI D+  L++   ++ +RK+++NY+P +V+RV IPK  + K RPLGIPTI DR+VQ
Sbjct  74   VDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNG-KTRPLGIPTIVDRIVQ  132

Query  123  QSILQVLEPICEAKFHNHSYGFRPNRSTHHALSRVVSLINIGHQHYCVDIDIKGFFDNVC  182
            Q ILQV+EPICEAKF ++S GFRPNRS++ A+++ + LI++ H    VD+DIKGFFDN+ 
Sbjct  133  QCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNIS  192

Query  183  HKKLLRQMWTLGIRDKSLLCVISKILKSEI---EGEGI-PNKGTPQGGIISPLLSNIVLN  238
            H KL+RQ+W+LGIRDK LLC+I  +LK+ +   +GE   P +GTPQGGI+SPLL+NIVLN
Sbjct  193  HTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLN  252

Query  239  ELDWWISSQWET------YK----PHRISTRHLGFRQYARKYTNLKCGYVVRYADDFKIM  288
            ELDWWI+SQWE       +K    ++    +  ++R   R  + LK    VRYADDFKI 
Sbjct  253  ELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRR--SRLKEMHAVRYADDFKIF  310

Query  289  CRTYDEAQRFYHATVDFLKSRLGLEInpkkskvvnlkknssvFLGFKIKVVKQGKAKFGY  348
            C T ++A R Y AT   LK RLGLEI+P KSKVVNLK++ S FLGFK+KV K+GK    Y
Sbjct  311  CATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKK---Y  367

Query  349  IAKTSMSDKAITKAKRQLKERIK----GIQKEPTSEKVTQFNSTLLGIQNYFKYAVTIYM  404
            + ++ MSDKA  KA  ++ E +K    + + ++   ++ ++NS + G+++Y+  +  +  
Sbjct  368  VVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSH  427

Query  405  DLTEVNYSLRRVIRTRLRNNMKHMKFCETSVNFKRKTKGIQPNTKIYAVQNTPLLPVTGI  464
            D++ + +S+ + +R RL+ ++      +    F +   G   + ++  ++  P++P+  +
Sbjct  428  DFSRLAFSINKQLRNRLKGDLSKKG--QLRNGFIKEKYGASRQMRF--LHGRPVVPLGYV  483

Query  465  HHKNPWNFSQVICNYTETGRNKVHSNLKAIPKDVLNQVMRTYSKNKSIEYNDNRISKYVA  524
            + KN+ +  + I +YT  GR+++H NL AI    +  +MR   K ++IEY DNRIS Y A
Sbjct  484  QSKNAQHKRKSINKYTVKGREQIHKNL-AIDTATMLWLMRNPVKGRTIEYADNRISLYAA  542

Query  525  QYGKCYVTGEEIGIERVHCHHIVPIKQGGDDKYNNLVIVDWFIHKLIHMTNLNKITHYLR  584
            QYGKC VTG  +  + +HCHH VP+ +GG D Y NL++V   +H LIH ++   I  YL+
Sbjct  543  QYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLK  602

Query  585  SFKLNKKQMDKLNVLRTKAGNEPIV  609
            S++L++KQ++KLN LR+ A   PI+
Sbjct  603  SLNLDNKQIEKLNKLRSMAEMPPII  627

54) CT43_CH3943 in NC_017208


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  408 bits (1534),  Expect = 7e-115, Method: Compositional matrix adjust.
 Identities = 282/625 (46%), Positives = 424/625 (68%), Gaps = 29/625 (4%)

Query  3    KKTKLRHSEYYDMQRKYDELYSNSLNGNNFYKLIDIIGSEENIRLAYRNIKTNKGSNTAG  62
            K+ K+R+SEYYDM+  +D LY++S +++ F  L++II SEENI+LAYR IK N GS+T+G
Sbjct  14   KQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSG  73

Query  63   VDNLTIKDIWHLNDTKIIHEVRKRLNNYQPQAVKRVLIPKEGSDKKRPLGIPTIWDRLVQ  122
            VD+ TI D+  L++   ++ +RK+++NY+P +V+RV IPK  + K RPLGIPTI DR+VQ
Sbjct  74   VDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNG-KTRPLGIPTIVDRIVQ  132

Query  123  QSILQVLEPICEAKFHNHSYGFRPNRSTHHALSRVVSLINIGHQHYCVDIDIKGFFDNVC  182
            Q ILQV+EPICEAKF ++S GFRPNRS++ A+++ + LI++ H    VD+DIKGFFDN+ 
Sbjct  133  QCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNIS  192

Query  183  HKKLLRQMWTLGIRDKSLLCVISKILKSEI---EGEGI-PNKGTPQGGIISPLLSNIVLN  238
            H KL+RQ+W+LGIRDK LLC+I  +LK+ +   +GE   P +GTPQGGI+SPLL+NIVLN
Sbjct  193  HTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLN  252

Query  239  ELDWWISSQWET------YK----PHRISTRHLGFRQYARKYTNLKCGYVVRYADDFKIM  288
            ELDWWI+SQWE       +K    ++    +  ++R   R  + LK    VRYADDFKI 
Sbjct  253  ELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRR--SRLKEMHAVRYADDFKIF  310

Query  289  CRTYDEAQRFYHATVDFLKSRLGLEInpkkskvvnlkknssvFLGFKIKVVKQGKAKFGY  348
            C T ++A R Y AT   LK RLGLEI+P KSKVVNLK++ S FLGFK+KV K+GK    Y
Sbjct  311  CATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKK---Y  367

Query  349  IAKTSMSDKAITKAKRQLKERIK----GIQKEPTSEKVTQFNSTLLGIQNYFKYAVTIYM  404
            + ++ MSDKA  KA  ++ E +K    + + ++   ++ ++NS + G+++Y+  +  +  
Sbjct  368  VVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSH  427

Query  405  DLTEVNYSLRRVIRTRLRNNMKHMKFCETSVNFKRKTKGIQPNTKIYAVQNTPLLPVTGI  464
            D++ + +S+ + +R RL+ ++      +    F +   G   + ++  ++  P++P+  +
Sbjct  428  DFSRLAFSINKQLRNRLKGDLSKKG--QLRNGFIKEKYGASRQMRF--LHGRPVVPLGYV  483

Query  465  HHKNPWNFSQVICNYTETGRNKVHSNLKAIPKDVLNQVMRTYSKNKSIEYNDNRISKYVA  524
            + KN+ +  + I +YT  GR+++H NL AI    +  +MR   K ++IEY DNRIS Y A
Sbjct  484  QSKNAQHKRKSINKYTVKGREQIHKNL-AIDTATMLWLMRNPVKGRTIEYADNRISLYAA  542

Query  525  QYGKCYVTGEEIGIERVHCHHIVPIKQGGDDKYNNLVIVDWFIHKLIHMTNLNKITHYLR  584
            QYGKC VTG  +  + +HCHH VP+ +GG D Y NL++V   +H LIH ++   I  YL+
Sbjct  543  QYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLK  602

Query  585  SFKLNKKQMDKLNVLRTKAGNEPIV  609
            S++L++KQ++KLN LR+ A   PI+
Sbjct  603  SLNLDNKQIEKLNKLRSMAEMPPII  627

55) H175_ch4006 in NC_020376


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  408 bits (1534),  Expect = 7e-115, Method: Compositional matrix adjust.
 Identities = 282/625 (46%), Positives = 424/625 (68%), Gaps = 29/625 (4%)

Query  3    KKTKLRHSEYYDMQRKYDELYSNSLNGNNFYKLIDIIGSEENIRLAYRNIKTNKGSNTAG  62
            K+ K+R+SEYYDM+  +D LY++S +++ F  L++II SEENI+LAYR IK N GS+T+G
Sbjct  14   KQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSG  73

Query  63   VDNLTIKDIWHLNDTKIIHEVRKRLNNYQPQAVKRVLIPKEGSDKKRPLGIPTIWDRLVQ  122
            VD+ TI D+  L++   ++ +RK+++NY+P +V+RV IPK  + K RPLGIPTI DR+VQ
Sbjct  74   VDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNG-KTRPLGIPTIVDRIVQ  132

Query  123  QSILQVLEPICEAKFHNHSYGFRPNRSTHHALSRVVSLINIGHQHYCVDIDIKGFFDNVC  182
            Q ILQV+EPICEAKF ++S GFRPNRS++ A+++ + LI++ H    VD+DIKGFFDN+ 
Sbjct  133  QCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNIS  192

Query  183  HKKLLRQMWTLGIRDKSLLCVISKILKSEI---EGEGI-PNKGTPQGGIISPLLSNIVLN  238
            H KL+RQ+W+LGIRDK LLC+I  +LK+ +   +GE   P +GTPQGGI+SPLL+NIVLN
Sbjct  193  HTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLN  252

Query  239  ELDWWISSQWET------YK----PHRISTRHLGFRQYARKYTNLKCGYVVRYADDFKIM  288
            ELDWWI+SQWE       +K    ++    +  ++R   R  + LK    VRYADDFKI 
Sbjct  253  ELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRR--SRLKEMHAVRYADDFKIF  310

Query  289  CRTYDEAQRFYHATVDFLKSRLGLEInpkkskvvnlkknssvFLGFKIKVVKQGKAKFGY  348
            C T ++A R Y AT   LK RLGLEI+P KSKVVNLK++ S FLGFK+KV K+GK    Y
Sbjct  311  CATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKK---Y  367

Query  349  IAKTSMSDKAITKAKRQLKERIK----GIQKEPTSEKVTQFNSTLLGIQNYFKYAVTIYM  404
            + ++ MSDKA  KA  ++ E +K    + + ++   ++ ++NS + G+++Y+  +  +  
Sbjct  368  VVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSH  427

Query  405  DLTEVNYSLRRVIRTRLRNNMKHMKFCETSVNFKRKTKGIQPNTKIYAVQNTPLLPVTGI  464
            D++ + +S+ + +R RL+ ++      +    F +   G   + ++  ++  P++P+  +
Sbjct  428  DFSRLAFSINKQLRNRLKGDLSKKG--QLRNGFIKEKYGASRQMRF--LHGRPVVPLGYV  483

Query  465  HHKNPWNFSQVICNYTETGRNKVHSNLKAIPKDVLNQVMRTYSKNKSIEYNDNRISKYVA  524
            + KN+ +  + I +YT  GR+++H NL AI    +  +MR   K ++IEY DNRIS Y A
Sbjct  484  QSKNAQHKRKSINKYTVKGREQIHKNL-AIDTATMLWLMRNPVKGRTIEYADNRISLYAA  542

Query  525  QYGKCYVTGEEIGIERVHCHHIVPIKQGGDDKYNNLVIVDWFIHKLIHMTNLNKITHYLR  584
            QYGKC VTG  +  + +HCHH VP+ +GG D Y NL++V   +H LIH ++   I  YL+
Sbjct  543  QYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLK  602

Query  585  SFKLNKKQMDKLNVLRTKAGNEPIV  609
            S++L++KQ++KLN LR+ A   PI+
Sbjct  603  SLNLDNKQIEKLNKLRSMAEMPPII  627

56) BCAH187_C0165 in NC_011655


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  407 bits (1533),  Expect = 9e-115, Method: Compositional matrix adjust.
 Identities = 282/625 (46%), Positives = 424/625 (68%), Gaps = 29/625 (4%)

Query  3    KKTKLRHSEYYDMQRKYDELYSNSLNGNNFYKLIDIIGSEENIRLAYRNIKTNKGSNTAG  62
            K+ K+R+SEYYDM+  +D LY++S +++ F  L++II SEENI+LAYR IK N GS+T+G
Sbjct  14   KQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSG  73

Query  63   VDNLTIKDIWHLNDTKIIHEVRKRLNNYQPQAVKRVLIPKEGSDKKRPLGIPTIWDRLVQ  122
            VD+ TI D+  L++   ++ +RK+++NY+P +V+RV IPK  + K RPLGIPTI DR+VQ
Sbjct  74   VDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNG-KTRPLGIPTIVDRIVQ  132

Query  123  QSILQVLEPICEAKFHNHSYGFRPNRSTHHALSRVVSLINIGHQHYCVDIDIKGFFDNVC  182
            Q ILQV+EPICEAKF ++S GFRPNRS++ A+++ + LI++ H    VD+DIKGFFDN+ 
Sbjct  133  QCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNIS  192

Query  183  HKKLLRQMWTLGIRDKSLLCVISKILKSEI---EGEGI-PNKGTPQGGIISPLLSNIVLN  238
            H KL+RQ+W+LGIRDK LLC+I  +LK+ +   +GE   P +GTPQGGI+SPLL+NIVLN
Sbjct  193  HTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLN  252

Query  239  ELDWWISSQWET------YK----PHRISTRHLGFRQYARKYTNLKCGYVVRYADDFKIM  288
            ELDWWI+SQWE       +K    ++    +  ++R   R  + LK    VRYADDFKI 
Sbjct  253  ELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRR--SRLKEMHAVRYADDFKIF  310

Query  289  CRTYDEAQRFYHATVDFLKSRLGLEInpkkskvvnlkknssvFLGFKIKVVKQGKAKFGY  348
            C T ++A R Y AT   LK RLGLEI+P KSKVVNLK++ S FLGFK+KV K+GK    Y
Sbjct  311  CATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKK---Y  367

Query  349  IAKTSMSDKAITKAKRQLKERIK----GIQKEPTSEKVTQFNSTLLGIQNYFKYAVTIYM  404
            + ++ MSDKA  KA  ++ E +K    + + ++   ++ ++NS + G+++Y+  +  +  
Sbjct  368  VVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSH  427

Query  405  DLTEVNYSLRRVIRTRLRNNMKHMKFCETSVNFKRKTKGIQPNTKIYVVQNTPLLPVTGI  464
            D++ + +S+ + +R RL+ ++      +    F +   G   + ++  ++  P++P+  +
Sbjct  428  DFSRLAFSINKQLRNRLKGDLSKKG--QLRNGFIKEKYGASRQMRF--LHGRPVVPLGYV  483

Query  465  HHKNPWNFSQVICNYTETGRNKVHSNLKAIPKDVLNQVMRTYSKNKSIEYNDNRISKYVA  524
            + KN+ +  + I +YT  GR+++H NL AI    +  +MR   K ++IEY DNRIS Y A
Sbjct  484  QSKNAQHKRKSINKYTVKGREQIHKNL-AIDTATMLWLMRNPVKGRTIEYADNRISLYAA  542

Query  525  QYGKCYVTGEEIGIERVHCHHIVPIKQGGDDKYNNLVIVDWFIHKLIHMTNLNKITHYLR  584
            QYGKC VTG  +  + +HCHH VP+ +GG D Y NL++V   +H LIH ++   I  YL+
Sbjct  543  QYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLK  602

Query  585  SFKLNKKQMDKLNVLRTKAGNEPIV  609
            S++L++KQ++KLN LR+ A   PI+
Sbjct  603  SLNLDNKQIEKLNKLRSMAEMPPII  627

57) BCAH187_A1017 in NC_011658


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  407 bits (1533),  Expect = 9e-115, Method: Compositional matrix adjust.
 Identities = 282/625 (46%), Positives = 424/625 (68%), Gaps = 29/625 (4%)

Query  3    KKTKLRHSEYYDMQRKYDELYSNSLNGNNFYKLIDIIGSEENIRLAYRNIKTNKGSNTAG  62
            K+ K+R+SEYYDM+  +D LY++S +++ F  L++II SEENI+LAYR IK N GS+T+G
Sbjct  14   KQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSG  73

Query  63   VDNLTIKDIWHLNDTKIIHEVRKRLNNYQPQAVKRVLIPKEGSDKKRPLGIPTIWDRLVQ  122
            VD+ TI D+  L++   ++ +RK+++NY+P +V+RV IPK  + K RPLGIPTI DR+VQ
Sbjct  74   VDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNG-KTRPLGIPTIVDRIVQ  132

Query  123  QSILQVLEPICEAKFHNHSYGFRPNRSTHHALSRVVSLINIGHQHYCVDIDIKGFFDNVC  182
            Q ILQV+EPICEAKF ++S GFRPNRS++ A+++ + LI++ H    VD+DIKGFFDN+ 
Sbjct  133  QCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNIS  192

Query  183  HKKLLRQMWTLGIRDKSLLCVISKILKSEI---EGEGI-PNKGTPQGGIISPLLSNIVLN  238
            H KL+RQ+W+LGIRDK LLC+I  +LK+ +   +GE   P +GTPQGGI+SPLL+NIVLN
Sbjct  193  HTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLN  252

Query  239  ELDWWISSQWET------YK----PHRISTRHLGFRQYARKYTNLKCGYVVRYADDFKIM  288
            ELDWWI+SQWE       +K    ++    +  ++R   R  + LK    VRYADDFKI 
Sbjct  253  ELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRR--SRLKEMHAVRYADDFKIF  310

Query  289  CRTYDEAQRFYHATVDFLKSRLGLEInpkkskvvnlkknssvFLGFKIKVVKQGKAKFGY  348
            C T ++A R Y AT   LK RLGLEI+P KSKVVNLK++ S FLGFK+KV K+GK    Y
Sbjct  311  CATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKK---Y  367

Query  349  IAKTSMSDKAITKAKRQLKERIK----GIQKEPTSEKVTQFNSTLLGIQNYFKYAVTIYM  404
            + ++ MSDKA  KA  ++ E +K    + + ++   ++ ++NS + G+++Y+  +  +  
Sbjct  368  VVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSH  427

Query  405  DLTEVNYSLRRVIRTRLRNNMKHMKFCETSVNFKRKTKGIQPNTKIYVVQNTPLLPVTGI  464
            D++ + +S+ + +R RL+ ++      +    F +   G   + ++  ++  P++P+  +
Sbjct  428  DFSRLAFSINKQLRNRLKGDLSKKG--QLRNGFIKEKYGASRQMRF--LHGRPVVPLGYV  483

Query  465  HHKNPWNFSQVICNYTETGRNKVHSNLKAIPKDVLNQVMRTYSKNKSIEYNDNRISKYVA  524
            + KN+ +  + I +YT  GR+++H NL AI    +  +MR   K ++IEY DNRIS Y A
Sbjct  484  QSKNAQHKRKSINKYTVKGREQIHKNL-AIDTATMLWLMRNPVKGRTIEYADNRISLYAA  542

Query  525  QYGKCYVTGEEIGIERVHCHHIVPIKQGGDDKYNNLVIVDWFIHKLIHMTNLNKITHYLR  584
            QYGKC VTG  +  + +HCHH VP+ +GG D Y NL++V   +H LIH ++   I  YL+
Sbjct  543  QYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLK  602

Query  585  SFKLNKKQMDKLNVLRTKAGNEPIV  609
            S++L++KQ++KLN LR+ A   PI+
Sbjct  603  SLNLDNKQIEKLNKLRSMAEMPPII  627

58) BCAH187_A1054 in NC_011658


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  407 bits (1533),  Expect = 9e-115, Method: Compositional matrix adjust.
 Identities = 282/625 (46%), Positives = 424/625 (68%), Gaps = 29/625 (4%)

Query  3    KKTKLRHSEYYDMQRKYDELYSNSLNGNNFYKLIDIIGSEENIRLAYRNIKTNKGSNTAG  62
            K+ K+R+SEYYDM+  +D LY++S +++ F  L++II SEENI+LAYR IK N GS+T+G
Sbjct  14   KQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSG  73

Query  63   VDNLTIKDIWHLNDTKIIHEVRKRLNNYQPQAVKRVLIPKEGSDKKRPLGIPTIWDRLVQ  122
            VD+ TI D+  L++   ++ +RK+++NY+P +V+RV IPK  + K RPLGIPTI DR+VQ
Sbjct  74   VDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNG-KTRPLGIPTIVDRIVQ  132

Query  123  QSILQVLEPICEAKFHNHSYGFRPNRSTHHALSRVVSLINIGHQHYCVDIDIKGFFDNVC  182
            Q ILQV+EPICEAKF ++S GFRPNRS++ A+++ + LI++ H    VD+DIKGFFDN+ 
Sbjct  133  QCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNIS  192

Query  183  HKKLLRQMWTLGIRDKSLLCVISKILKSEI---EGEGI-PNKGTPQGGIISPLLSNIVLN  238
            H KL+RQ+W+LGIRDK LLC+I  +LK+ +   +GE   P +GTPQGGI+SPLL+NIVLN
Sbjct  193  HTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLN  252

Query  239  ELDWWISSQWET------YK----PHRISTRHLGFRQYARKYTNLKCGYVVRYADDFKIM  288
            ELDWWI+SQWE       +K    ++    +  ++R   R  + LK    VRYADDFKI 
Sbjct  253  ELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRR--SRLKEMHAVRYADDFKIF  310

Query  289  CRTYDEAQRFYHATVDFLKSRLGLEInpkkskvvnlkknssvFLGFKIKVVKQGKAKFGY  348
            C T ++A R Y AT   LK RLGLEI+P KSKVVNLK++ S FLGFK+KV K+GK    Y
Sbjct  311  CATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKK---Y  367

Query  349  IAKTSMSDKAITKAKRQLKERIK----GIQKEPTSEKVTQFNSTLLGIQNYFKYAVTIYM  404
            + ++ MSDKA  KA  ++ E +K    + + ++   ++ ++NS + G+++Y+  +  +  
Sbjct  368  VVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSH  427

Query  405  DLTEVNYSLRRVIRTRLRNNMKHMKFCETSVNFKRKTKGIQPNTKIYVVQNTPLLPVTGI  464
            D++ + +S+ + +R RL+ ++      +    F +   G   + ++  ++  P++P+  +
Sbjct  428  DFSRLAFSINKQLRNRLKGDLSKKG--QLRNGFIKEKYGASRQMRF--LHGRPVVPLGYV  483

Query  465  HHKNPWNFSQVICNYTETGRNKVHSNLKAIPKDVLNQVMRTYSKNKSIEYNDNRISKYVA  524
            + KN+ +  + I +YT  GR+++H NL AI    +  +MR   K ++IEY DNRIS Y A
Sbjct  484  QSKNAQHKRKSINKYTVKGREQIHKNL-AIDTATMLWLMRNPVKGRTIEYADNRISLYAA  542

Query  525  QYGKCYVTGEEIGIERVHCHHIVPIKQGGDDKYNNLVIVDWFIHKLIHMTNLNKITHYLR  584
            QYGKC VTG  +  + +HCHH VP+ +GG D Y NL++V   +H LIH ++   I  YL+
Sbjct  543  QYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLK  602

Query  585  SFKLNKKQMDKLNVLRTKAGNEPIV  609
            S++L++KQ++KLN LR+ A   PI+
Sbjct  603  SLNLDNKQIEKLNKLRSMAEMPPII  627

59) BCAH187_A1884 in NC_011658


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  407 bits (1533),  Expect = 9e-115, Method: Compositional matrix adjust.
 Identities = 282/625 (46%), Positives = 424/625 (68%), Gaps = 29/625 (4%)

Query  3    KKTKLRHSEYYDMQRKYDELYSNSLNGNNFYKLIDIIGSEENIRLAYRNIKTNKGSNTAG  62
            K+ K+R+SEYYDM+  +D LY++S +++ F  L++II SEENI+LAYR IK N GS+T+G
Sbjct  14   KQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSG  73

Query  63   VDNLTIKDIWHLNDTKIIHEVRKRLNNYQPQAVKRVLIPKEGSDKKRPLGIPTIWDRLVQ  122
            VD+ TI D+  L++   ++ +RK+++NY+P +V+RV IPK  + K RPLGIPTI DR+VQ
Sbjct  74   VDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNG-KTRPLGIPTIVDRIVQ  132

Query  123  QSILQVLEPICEAKFHNHSYGFRPNRSTHHALSRVVSLINIGHQHYCVDIDIKGFFDNVC  182
            Q ILQV+EPICEAKF ++S GFRPNRS++ A+++ + LI++ H    VD+DIKGFFDN+ 
Sbjct  133  QCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNIS  192

Query  183  HKKLLRQMWTLGIRDKSLLCVISKILKSEI---EGEGI-PNKGTPQGGIISPLLSNIVLN  238
            H KL+RQ+W+LGIRDK LLC+I  +LK+ +   +GE   P +GTPQGGI+SPLL+NIVLN
Sbjct  193  HTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLN  252

Query  239  ELDWWISSQWET------YK----PHRISTRHLGFRQYARKYTNLKCGYVVRYADDFKIM  288
            ELDWWI+SQWE       +K    ++    +  ++R   R  + LK    VRYADDFKI 
Sbjct  253  ELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRR--SRLKEMHAVRYADDFKIF  310

Query  289  CRTYDEAQRFYHATVDFLKSRLGLEInpkkskvvnlkknssvFLGFKIKVVKQGKAKFGY  348
            C T ++A R Y AT   LK RLGLEI+P KSKVVNLK++ S FLGFK+KV K+GK    Y
Sbjct  311  CATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKK---Y  367

Query  349  IAKTSMSDKAITKAKRQLKERIK----GIQKEPTSEKVTQFNSTLLGIQNYFKYAVTIYM  404
            + ++ MSDKA  KA  ++ E +K    + + ++   ++ ++NS + G+++Y+  +  +  
Sbjct  368  VVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSH  427

Query  405  DLTEVNYSLRRVIRTRLRNNMKHMKFCETSVNFKRKTKGIQPNTKIYVVQNTPLLPVTGI  464
            D++ + +S+ + +R RL+ ++      +    F +   G   + ++  ++  P++P+  +
Sbjct  428  DFSRLAFSINKQLRNRLKGDLSKKG--QLRNGFIKEKYGASRQMRF--LHGRPVVPLGYV  483

Query  465  HHKNPWNFSQVICNYTETGRNKVHSNLKAIPKDVLNQVMRTYSKNKSIEYNDNRISKYVA  524
            + KN+ +  + I +YT  GR+++H NL AI    +  +MR   K ++IEY DNRIS Y A
Sbjct  484  QSKNAQHKRKSINKYTVKGREQIHKNL-AIDTATMLWLMRNPVKGRTIEYADNRISLYAA  542

Query  525  QYGKCYVTGEEIGIERVHCHHIVPIKQGGDDKYNNLVIVDWFIHKLIHMTNLNKITHYLR  584
            QYGKC VTG  +  + +HCHH VP+ +GG D Y NL++V   +H LIH ++   I  YL+
Sbjct  543  QYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLK  602

Query  585  SFKLNKKQMDKLNVLRTKAGNEPIV  609
            S++L++KQ++KLN LR+ A   PI+
Sbjct  603  SLNLDNKQIEKLNKLRSMAEMPPII  627

60) BCAH187_A4056 in NC_011658


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  407 bits (1533),  Expect = 9e-115, Method: Compositional matrix adjust.
 Identities = 282/625 (46%), Positives = 424/625 (68%), Gaps = 29/625 (4%)

Query  3    KKTKLRHSEYYDMQRKYDELYSNSLNGNNFYKLIDIIGSEENIRLAYRNIKTNKGSNTAG  62
            K+ K+R+SEYYDM+  +D LY++S +++ F  L++II SEENI+LAYR IK N GS+T+G
Sbjct  14   KQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSG  73

Query  63   VDNLTIKDIWHLNDTKIIHEVRKRLNNYQPQAVKRVLIPKEGSDKKRPLGIPTIWDRLVQ  122
            VD+ TI D+  L++   ++ +RK+++NY+P +V+RV IPK  + K RPLGIPTI DR+VQ
Sbjct  74   VDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNG-KTRPLGIPTIVDRIVQ  132

Query  123  QSILQVLEPICEAKFHNHSYGFRPNRSTHHALSRVVSLINIGHQHYCVDIDIKGFFDNVC  182
            Q ILQV+EPICEAKF ++S GFRPNRS++ A+++ + LI++ H    VD+DIKGFFDN+ 
Sbjct  133  QCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNIS  192

Query  183  HKKLLRQMWTLGIRDKSLLCVISKILKSEI---EGEGI-PNKGTPQGGIISPLLSNIVLN  238
            H KL+RQ+W+LGIRDK LLC+I  +LK+ +   +GE   P +GTPQGGI+SPLL+NIVLN
Sbjct  193  HTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLN  252

Query  239  ELDWWISSQWET------YK----PHRISTRHLGFRQYARKYTNLKCGYVVRYADDFKIM  288
            ELDWWI+SQWE       +K    ++    +  ++R   R  + LK    VRYADDFKI 
Sbjct  253  ELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRR--SRLKEMHAVRYADDFKIF  310

Query  289  CRTYDEAQRFYHATVDFLKSRLGLEInpkkskvvnlkknssvFLGFKIKVVKQGKAKFGY  348
            C T ++A R Y AT   LK RLGLEI+P KSKVVNLK++ S FLGFK+KV K+GK    Y
Sbjct  311  CATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKK---Y  367

Query  349  IAKTSMSDKAITKAKRQLKERIK----GIQKEPTSEKVTQFNSTLLGIQNYFKYAVTIYM  404
            + ++ MSDKA  KA  ++ E +K    + + ++   ++ ++NS + G+++Y+  +  +  
Sbjct  368  VVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSH  427

Query  405  DLTEVNYSLRRVIRTRLRNNMKHMKFCETSVNFKRKTKGIQPNTKIYVVQNTPLLPVTGI  464
            D++ + +S+ + +R RL+ ++      +    F +   G   + ++  ++  P++P+  +
Sbjct  428  DFSRLAFSINKQLRNRLKGDLSKKG--QLRNGFIKEKYGASRQMRF--LHGRPVVPLGYV  483

Query  465  HHKNPWNFSQVICNYTETGRNKVHSNLKAIPKDVLNQVMRTYSKNKSIEYNDNRISKYVA  524
            + KN+ +  + I +YT  GR+++H NL AI    +  +MR   K ++IEY DNRIS Y A
Sbjct  484  QSKNAQHKRKSINKYTVKGREQIHKNL-AIDTATMLWLMRNPVKGRTIEYADNRISLYAA  542

Query  525  QYGKCYVTGEEIGIERVHCHHIVPIKQGGDDKYNNLVIVDWFIHKLIHMTNLNKITHYLR  584
            QYGKC VTG  +  + +HCHH VP+ +GG D Y NL++V   +H LIH ++   I  YL+
Sbjct  543  QYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLK  602

Query  585  SFKLNKKQMDKLNVLRTKAGNEPIV  609
            S++L++KQ++KLN LR+ A   PI+
Sbjct  603  SLNLDNKQIEKLNKLRSMAEMPPII  627

61) BCAH187_A4163 in NC_011658


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  407 bits (1533),  Expect = 9e-115, Method: Compositional matrix adjust.
 Identities = 282/625 (46%), Positives = 424/625 (68%), Gaps = 29/625 (4%)

Query  3    KKTKLRHSEYYDMQRKYDELYSNSLNGNNFYKLIDIIGSEENIRLAYRNIKTNKGSNTAG  62
            K+ K+R+SEYYDM+  +D LY++S +++ F  L++II SEENI+LAYR IK N GS+T+G
Sbjct  14   KQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSG  73

Query  63   VDNLTIKDIWHLNDTKIIHEVRKRLNNYQPQAVKRVLIPKEGSDKKRPLGIPTIWDRLVQ  122
            VD+ TI D+  L++   ++ +RK+++NY+P +V+RV IPK  + K RPLGIPTI DR+VQ
Sbjct  74   VDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNG-KTRPLGIPTIVDRIVQ  132

Query  123  QSILQVLEPICEAKFHNHSYGFRPNRSTHHALSRVVSLINIGHQHYCVDIDIKGFFDNVC  182
            Q ILQV+EPICEAKF ++S GFRPNRS++ A+++ + LI++ H    VD+DIKGFFDN+ 
Sbjct  133  QCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNIS  192

Query  183  HKKLLRQMWTLGIRDKSLLCVISKILKSEI---EGEGI-PNKGTPQGGIISPLLSNIVLN  238
            H KL+RQ+W+LGIRDK LLC+I  +LK+ +   +GE   P +GTPQGGI+SPLL+NIVLN
Sbjct  193  HTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLN  252

Query  239  ELDWWISSQWET------YK----PHRISTRHLGFRQYARKYTNLKCGYVVRYADDFKIM  288
            ELDWWI+SQWE       +K    ++    +  ++R   R  + LK    VRYADDFKI 
Sbjct  253  ELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRR--SRLKEMHAVRYADDFKIF  310

Query  289  CRTYDEAQRFYHATVDFLKSRLGLEInpkkskvvnlkknssvFLGFKIKVVKQGKAKFGY  348
            C T ++A R Y AT   LK RLGLEI+P KSKVVNLK++ S FLGFK+KV K+GK    Y
Sbjct  311  CATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKK---Y  367

Query  349  IAKTSMSDKAITKAKRQLKERIK----GIQKEPTSEKVTQFNSTLLGIQNYFKYAVTIYM  404
            + ++ MSDKA  KA  ++ E +K    + + ++   ++ ++NS + G+++Y+  +  +  
Sbjct  368  VVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSH  427

Query  405  DLTEVNYSLRRVIRTRLRNNMKHMKFCETSVNFKRKTKGIQPNTKIYVVQNTPLLPVTGI  464
            D++ + +S+ + +R RL+ ++      +    F +   G   + ++  ++  P++P+  +
Sbjct  428  DFSRLAFSINKQLRNRLKGDLSKKG--QLRNGFIKEKYGASRQMRF--LHGRPVVPLGYV  483

Query  465  HHKNPWNFSQVICNYTETGRNKVHSNLKAIPKDVLNQVMRTYSKNKSIEYNDNRISKYVA  524
            + KN+ +  + I +YT  GR+++H NL AI    +  +MR   K ++IEY DNRIS Y A
Sbjct  484  QSKNAQHKRKSINKYTVKGREQIHKNL-AIDTATMLWLMRNPVKGRTIEYADNRISLYAA  542

Query  525  QYGKCYVTGEEIGIERVHCHHIVPIKQGGDDKYNNLVIVDWFIHKLIHMTNLNKITHYLR  584
            QYGKC VTG  +  + +HCHH VP+ +GG D Y NL++V   +H LIH ++   I  YL+
Sbjct  543  QYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLK  602

Query  585  SFKLNKKQMDKLNVLRTKAGNEPIV  609
            S++L++KQ++KLN LR+ A   PI+
Sbjct  603  SLNLDNKQIEKLNKLRSMAEMPPII  627

62) BCN_0838 in NC_016771


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  407 bits (1533),  Expect = 9e-115, Method: Compositional matrix adjust.
 Identities = 282/625 (46%), Positives = 424/625 (68%), Gaps = 29/625 (4%)

Query  3    KKTKLRHSEYYDMQRKYDELYSNSLNGNNFYKLIDIIGSEENIRLAYRNIKTNKGSNTAG  62
            K+ K+R+SEYYDM+  +D LY++S +++ F  L++II SEENI+LAYR IK N GS+T+G
Sbjct  14   KQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSG  73

Query  63   VDNLTIKDIWHLNDTKIIHEVRKRLNNYQPQAVKRVLIPKEGSDKKRPLGIPTIWDRLVQ  122
            VD+ TI D+  L++   ++ +RK+++NY+P +V+RV IPK  + K RPLGIPTI DR+VQ
Sbjct  74   VDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNG-KTRPLGIPTIVDRIVQ  132

Query  123  QSILQVLEPICEAKFHNHSYGFRPNRSTHHALSRVVSLINIGHQHYCVDIDIKGFFDNVC  182
            Q ILQV+EPICEAKF ++S GFRPNRS++ A+++ + LI++ H    VD+DIKGFFDN+ 
Sbjct  133  QCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNIS  192

Query  183  HKKLLRQMWTLGIRDKSLLCVISKILKSEI---EGEGI-PNKGTPQGGIISPLLSNIVLN  238
            H KL+RQ+W+LGIRDK LLC+I  +LK+ +   +GE   P +GTPQGGI+SPLL+NIVLN
Sbjct  193  HTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLN  252

Query  239  ELDWWISSQWET------YK----PHRISTRHLGFRQYARKYTNLKCGYVVRYADDFKIM  288
            ELDWWI+SQWE       +K    ++    +  ++R   R  + LK    VRYADDFKI 
Sbjct  253  ELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRR--SRLKEMHAVRYADDFKIF  310

Query  289  CRTYDEAQRFYHATVDFLKSRLGLEInpkkskvvnlkknssvFLGFKIKVVKQGKAKFGY  348
            C T ++A R Y AT   LK RLGLEI+P KSKVVNLK++ S FLGFK+KV K+GK    Y
Sbjct  311  CATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKK---Y  367

Query  349  IAKTSMSDKAITKAKRQLKERIK----GIQKEPTSEKVTQFNSTLLGIQNYFKYAVTIYM  404
            + ++ MSDKA  KA  ++ E +K    + + ++   ++ ++NS + G+++Y+  +  +  
Sbjct  368  VVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSH  427

Query  405  DLTEVNYSLRRVIRTRLRNNMKHMKFCETSVNFKRKTKGIQPNTKIYVVQNTPLLPVTGI  464
            D++ + +S+ + +R RL+ ++      +    F +   G   + ++  ++  P++P+  +
Sbjct  428  DFSRLAFSINKQLRNRLKGDLSKKG--QLRNGFIKEKYGASRQMRF--LHGRPVVPLGYV  483

Query  465  HHKNPWNFSQVICNYTETGRNKVHSNLKAIPKDVLNQVMRTYSKNKSIEYNDNRISKYVA  524
            + KN+ +  + I +YT  GR+++H NL AI    +  +MR   K ++IEY DNRIS Y A
Sbjct  484  QSKNAQHKRKSINKYTVKGREQIHKNL-AIDTATMLWLMRNPVKGRTIEYADNRISLYAA  542

Query  525  QYGKCYVTGEEIGIERVHCHHIVPIKQGGDDKYNNLVIVDWFIHKLIHMTNLNKITHYLR  584
            QYGKC VTG  +  + +HCHH VP+ +GG D Y NL++V   +H LIH ++   I  YL+
Sbjct  543  QYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLK  602

Query  585  SFKLNKKQMDKLNVLRTKAGNEPIV  609
            S++L++KQ++KLN LR+ A   PI+
Sbjct  603  SLNLDNKQIEKLNKLRSMAEMPPII  627

63) BCN_0873 in NC_016771


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  407 bits (1533),  Expect = 9e-115, Method: Compositional matrix adjust.
 Identities = 282/625 (46%), Positives = 424/625 (68%), Gaps = 29/625 (4%)

Query  3    KKTKLRHSEYYDMQRKYDELYSNSLNGNNFYKLIDIIGSEENIRLAYRNIKTNKGSNTAG  62
            K+ K+R+SEYYDM+  +D LY++S +++ F  L++II SEENI+LAYR IK N GS+T+G
Sbjct  14   KQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSG  73

Query  63   VDNLTIKDIWHLNDTKIIHEVRKRLNNYQPQAVKRVLIPKEGSDKKRPLGIPTIWDRLVQ  122
            VD+ TI D+  L++   ++ +RK+++NY+P +V+RV IPK  + K RPLGIPTI DR+VQ
Sbjct  74   VDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNG-KTRPLGIPTIVDRIVQ  132

Query  123  QSILQVLEPICEAKFHNHSYGFRPNRSTHHALSRVVSLINIGHQHYCVDIDIKGFFDNVC  182
            Q ILQV+EPICEAKF ++S GFRPNRS++ A+++ + LI++ H    VD+DIKGFFDN+ 
Sbjct  133  QCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNIS  192

Query  183  HKKLLRQMWTLGIRDKSLLCVISKILKSEI---EGEGI-PNKGTPQGGIISPLLSNIVLN  238
            H KL+RQ+W+LGIRDK LLC+I  +LK+ +   +GE   P +GTPQGGI+SPLL+NIVLN
Sbjct  193  HTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLN  252

Query  239  ELDWWISSQWET------YK----PHRISTRHLGFRQYARKYTNLKCGYVVRYADDFKIM  288
            ELDWWI+SQWE       +K    ++    +  ++R   R  + LK    VRYADDFKI 
Sbjct  253  ELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRR--SRLKEMHAVRYADDFKIF  310

Query  289  CRTYDEAQRFYHATVDFLKSRLGLEInpkkskvvnlkknssvFLGFKIKVVKQGKAKFGY  348
            C T ++A R Y AT   LK RLGLEI+P KSKVVNLK++ S FLGFK+KV K+GK    Y
Sbjct  311  CATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKK---Y  367

Query  349  IAKTSMSDKAITKAKRQLKERIK----GIQKEPTSEKVTQFNSTLLGIQNYFKYAVTIYM  404
            + ++ MSDKA  KA  ++ E +K    + + ++   ++ ++NS + G+++Y+  +  +  
Sbjct  368  VVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSH  427

Query  405  DLTEVNYSLRRVIRTRLRNNMKHMKFCETSVNFKRKTKGIQPNTKIYVVQNTPLLPVTGI  464
            D++ + +S+ + +R RL+ ++      +    F +   G   + ++  ++  P++P+  +
Sbjct  428  DFSRLAFSINKQLRNRLKGDLSKKG--QLRNGFIKEKYGASRQMRF--LHGRPVVPLGYV  483

Query  465  HHKNPWNFSQVICNYTETGRNKVHSNLKAIPKDVLNQVMRTYSKNKSIEYNDNRISKYVA  524
            + KN+ +  + I +YT  GR+++H NL AI    +  +MR   K ++IEY DNRIS Y A
Sbjct  484  QSKNAQHKRKSINKYTVKGREQIHKNL-AIDTATMLWLMRNPVKGRTIEYADNRISLYAA  542

Query  525  QYGKCYVTGEEIGIERVHCHHIVPIKQGGDDKYNNLVIVDWFIHKLIHMTNLNKITHYLR  584
            QYGKC VTG  +  + +HCHH VP+ +GG D Y NL++V   +H LIH ++   I  YL+
Sbjct  543  QYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLK  602

Query  585  SFKLNKKQMDKLNVLRTKAGNEPIV  609
            S++L++KQ++KLN LR+ A   PI+
Sbjct  603  SLNLDNKQIEKLNKLRSMAEMPPII  627

64) BCN_3836 in NC_016771


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  407 bits (1533),  Expect = 9e-115, Method: Compositional matrix adjust.
 Identities = 282/625 (46%), Positives = 424/625 (68%), Gaps = 29/625 (4%)

Query  3    KKTKLRHSEYYDMQRKYDELYSNSLNGNNFYKLIDIIGSEENIRLAYRNIKTNKGSNTAG  62
            K+ K+R+SEYYDM+  +D LY++S +++ F  L++II SEENI+LAYR IK N GS+T+G
Sbjct  14   KQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSG  73

Query  63   VDNLTIKDIWHLNDTKIIHEVRKRLNNYQPQAVKRVLIPKEGSDKKRPLGIPTIWDRLVQ  122
            VD+ TI D+  L++   ++ +RK+++NY+P +V+RV IPK  + K RPLGIPTI DR+VQ
Sbjct  74   VDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNG-KTRPLGIPTIVDRIVQ  132

Query  123  QSILQVLEPICEAKFHNHSYGFRPNRSTHHALSRVVSLINIGHQHYCVDIDIKGFFDNVC  182
            Q ILQV+EPICEAKF ++S GFRPNRS++ A+++ + LI++ H    VD+DIKGFFDN+ 
Sbjct  133  QCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNIS  192

Query  183  HKKLLRQMWTLGIRDKSLLCVISKILKSEI---EGEGI-PNKGTPQGGIISPLLSNIVLN  238
            H KL+RQ+W+LGIRDK LLC+I  +LK+ +   +GE   P +GTPQGGI+SPLL+NIVLN
Sbjct  193  HTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLN  252

Query  239  ELDWWISSQWET------YK----PHRISTRHLGFRQYARKYTNLKCGYVVRYADDFKIM  288
            ELDWWI+SQWE       +K    ++    +  ++R   R  + LK    VRYADDFKI 
Sbjct  253  ELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRR--SRLKEMHAVRYADDFKIF  310

Query  289  CRTYDEAQRFYHATVDFLKSRLGLEInpkkskvvnlkknssvFLGFKIKVVKQGKAKFGY  348
            C T ++A R Y AT   LK RLGLEI+P KSKVVNLK++ S FLGFK+KV K+GK    Y
Sbjct  311  CATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKK---Y  367

Query  349  IAKTSMSDKAITKAKRQLKERIK----GIQKEPTSEKVTQFNSTLLGIQNYFKYAVTIYM  404
            + ++ MSDKA  KA  ++ E +K    + + ++   ++ ++NS + G+++Y+  +  +  
Sbjct  368  VVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSH  427

Query  405  DLTEVNYSLRRVIRTRLRNNMKHMKFCETSVNFKRKTKGIQPNTKIYVVQNTPLLPVTGI  464
            D++ + +S+ + +R RL+ ++      +    F +   G   + ++  ++  P++P+  +
Sbjct  428  DFSRLAFSINKQLRNRLKGDLSKKG--QLRNGFIKEKYGASRQMRF--LHGRPVVPLGYV  483

Query  465  HHKNPWNFSQVICNYTETGRNKVHSNLKAIPKDVLNQVMRTYSKNKSIEYNDNRISKYVA  524
            + KN+ +  + I +YT  GR+++H NL AI    +  +MR   K ++IEY DNRIS Y A
Sbjct  484  QSKNAQHKRKSINKYTVKGREQIHKNL-AIDTATMLWLMRNPVKGRTIEYADNRISLYAA  542

Query  525  QYGKCYVTGEEIGIERVHCHHIVPIKQGGDDKYNNLVIVDWFIHKLIHMTNLNKITHYLR  584
            QYGKC VTG  +  + +HCHH VP+ +GG D Y NL++V   +H LIH ++   I  YL+
Sbjct  543  QYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLK  602

Query  585  SFKLNKKQMDKLNVLRTKAGNEPIV  609
            S++L++KQ++KLN LR+ A   PI+
Sbjct  603  SLNLDNKQIEKLNKLRSMAEMPPII  627

65) BCN_P146 in NC_016792


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  407 bits (1533),  Expect = 9e-115, Method: Compositional matrix adjust.
 Identities = 282/625 (46%), Positives = 424/625 (68%), Gaps = 29/625 (4%)

Query  3    KKTKLRHSEYYDMQRKYDELYSNSLNGNNFYKLIDIIGSEENIRLAYRNIKTNKGSNTAG  62
            K+ K+R+SEYYDM+  +D LY++S +++ F  L++II SEENI+LAYR IK N GS+T+G
Sbjct  14   KQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSG  73

Query  63   VDNLTIKDIWHLNDTKIIHEVRKRLNNYQPQAVKRVLIPKEGSDKKRPLGIPTIWDRLVQ  122
            VD+ TI D+  L++   ++ +RK+++NY+P +V+RV IPK  + K RPLGIPTI DR+VQ
Sbjct  74   VDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNG-KTRPLGIPTIVDRIVQ  132

Query  123  QSILQVLEPICEAKFHNHSYGFRPNRSTHHALSRVVSLINIGHQHYCVDIDIKGFFDNVC  182
            Q ILQV+EPICEAKF ++S GFRPNRS++ A+++ + LI++ H    VD+DIKGFFDN+ 
Sbjct  133  QCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNIS  192

Query  183  HKKLLRQMWTLGIRDKSLLCVISKILKSEI---EGEGI-PNKGTPQGGIISPLLSNIVLN  238
            H KL+RQ+W+LGIRDK LLC+I  +LK+ +   +GE   P +GTPQGGI+SPLL+NIVLN
Sbjct  193  HTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLN  252

Query  239  ELDWWISSQWET------YK----PHRISTRHLGFRQYARKYTNLKCGYVVRYADDFKIM  288
            ELDWWI+SQWE       +K    ++    +  ++R   R  + LK    VRYADDFKI 
Sbjct  253  ELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRR--SRLKEMHAVRYADDFKIF  310

Query  289  CRTYDEAQRFYHATVDFLKSRLGLEInpkkskvvnlkknssvFLGFKIKVVKQGKAKFGY  348
            C T ++A R Y AT   LK RLGLEI+P KSKVVNLK++ S FLGFK+KV K+GK    Y
Sbjct  311  CATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKK---Y  367

Query  349  IAKTSMSDKAITKAKRQLKERIK----GIQKEPTSEKVTQFNSTLLGIQNYFKYAVTIYM  404
            + ++ MSDKA  KA  ++ E +K    + + ++   ++ ++NS + G+++Y+  +  +  
Sbjct  368  VVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSH  427

Query  405  DLTEVNYSLRRVIRTRLRNNMKHMKFCETSVNFKRKTKGIQPNTKIYVVQNTPLLPVTGI  464
            D++ + +S+ + +R RL+ ++      +    F +   G   + ++  ++  P++P+  +
Sbjct  428  DFSRLAFSINKQLRNRLKGDLSKKG--QLRNGFIKEKYGASRQMRF--LHGRPVVPLGYV  483

Query  465  HHKNPWNFSQVICNYTETGRNKVHSNLKAIPKDVLNQVMRTYSKNKSIEYNDNRISKYVA  524
            + KN+ +  + I +YT  GR+++H NL AI    +  +MR   K ++IEY DNRIS Y A
Sbjct  484  QSKNAQHKRKSINKYTVKGREQIHKNL-AIDTATMLWLMRNPVKGRTIEYADNRISLYAA  542

Query  525  QYGKCYVTGEEIGIERVHCHHIVPIKQGGDDKYNNLVIVDWFIHKLIHMTNLNKITHYLR  584
            QYGKC VTG  +  + +HCHH VP+ +GG D Y NL++V   +H LIH ++   I  YL+
Sbjct  543  QYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLK  602

Query  585  SFKLNKKQMDKLNVLRTKAGNEPIV  609
            S++L++KQ++KLN LR+ A   PI+
Sbjct  603  SLNLDNKQIEKLNKLRSMAEMPPII  627

66) OBV_08540 in NC_016048


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  406 bits (1528),  Expect = 2e-114, Method: Compositional matrix adjust.
 Identities = 243/485 (51%), Positives = 349/485 (72%), Gaps = 12/485 (2%)

Query  1    MRKRLRFYIPQTVRRTEIPKPNGKMRPLGIPTIGDRLIQQCILQVLEPICEAKFHEKSFG  60
            +RK++  Y P  VRR EIPKPNGK RPLGIPTI DR++QQCILQV+EPICEAKF E+S G
Sbjct  94   IRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQCILQVMEPICEAKFSENSNG  153

Query  61   FRPNRSTEHAIAQVYKYMQVDNLSYVVDIDIKGFFDNVNQGKLLKQLWTLGIRDKKLLCI  120
            FRPNRS+E AIAQ  + +QV++L  VVD+DIKGFFDN+++ KL++Q+W+LGIRDKKLLCI
Sbjct  154  FRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISHTKLIRQIWALGIRDKKLLCI  213

Query  121  VSAMLKAEI----KDVGIPEKGTPQGDILSPLLSNIVLNELDWWIASQWEEMPPKHIKPF  176
            +  MLKA +     +   P +GTPQG+ILSPLL+NIVLNELDWWIASQWEEMP K     
Sbjct  214  IKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLNELDWWIASQWEEMPTKTKFKT  273

Query  177  IRKDNGKEDKGSIFLAYRERSNLKECHLVRYADDFKIFCRKRSDADKIFEATKLWLWDRL  236
              + +G E K+  + A R RS LKE H VRYADDFKIFC  + DA + + AT LWL DRL
Sbjct  274  RSNAQGTEIKSHAYRALR-RSRLKEMHAVRYADDFKIFCATHEDAVRAYKATELWLKDRL  332

Query  237  HLEISEEKSSVTNLKRHYSEYLGFQIRLHKKGKTKGGKPRYTVKSHITEKADKRIKDSLH  296
             LEIS +KS V NLKR+YS++LGF++      K +    +Y V+SH+++KA K+  + + 
Sbjct  333  GLEISPDKSKVVNLKRQYSDFLGFKL------KVRKKGKKYVVRSHMSDKAYKKAHEKVS  386

Query  297  KQIRSVQKPIGNRSGHASVECYNAYVIGVHNYYEIATYVAQDFYKISHSAYKSLRARLKK  356
             +++ +  + ++ +    ++ YN+ V G+H+YY I+T V++DF +++ S  K LR RLK 
Sbjct  387  EEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLAFSINKQLRNRLKG  446

Query  357  RMKRSGQYILPYIQEKYGHSQQIHYVYDTALAPIGAIKHRPPGMLRVAVNKYTHQGRAGI  416
             + + GQ    +I+EKYG S+Q++++ + ++ P+G ++ + +   R ++NKYT +GR  I
Sbjct  447  DLSKKGQLRNGFIKEKYGASRQMRFLHGRPVVPLGYVQSKNAQHKRKSINKYTVKGREQI  506

Query  417  HSRLETVNMAVLTFLMRNPVRDRTIEFNDNRLSLYCGQCGKCAISGENLEIGHLHCHHII  476
            H  L +++ A +  LMRNPV++RTIE+ DNR+SLY +Q GKCA++G  ++  ++HCHH +
Sbjct  507  HKNL-AIDTATMLWLMRNPVKGRTIEYADNRISLYAAQYGKCAVTGIPMNSHDIHCHHKV  565

Query  477  PLQKA  481
            P+ ++
Sbjct  566  PVSNG  570

67) pE33L466_0466 in NC_007103


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  406 bits (1529),  Expect = 2e-114, Method: Compositional matrix adjust.
 Identities = 274/616 (45%), Positives = 413/616 (68%), Gaps = 27/616 (4%)

Query  5    LRHAEYYDMQKVFDDLYERSENNAIKGVNLYKYIISKDNILLAYRNIKANTGSKTEGTDG  64
            +R++EYYDM+  FD LY  S ++     +L   I S +NI LAYR IK NTGS T G D 
Sbjct  18   IRNSEYYDMEGTFDRLYAESKKDKTFN-HLMEIIESEENIKLAYRTIKKNTGSDTSGVDK  76

Query  65   ITIDHYKMKDVDSFVNNIRKTLVDYKPNTVRRVEISKPNGKKRLLGIPTMRDRLIQQMFK  124
             TI +      + +V  IRK + +Y P  VRRVEI+KPNGK R LGIPT+ DR++QQ + 
Sbjct  77   RTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQCIL  136

Query  125  QVLEPICEAKFYKHSYGFRPNRSTHHAMARCQFLMNRGGYSHVVDIDIQGFFDNVNHSKL  184
            QV+EPICEAKF  +S GFRPNRS++ A+A+C  L++     HVVD+DI+GFFDN++H+KL
Sbjct  137  QVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISHTKL  196

Query  185  LKQLYNIGITDRRVLTIISKMLKAPI---KGEGI-PTKGTPQGGILSPLLSNVVLNDLDW  240
            ++Q+  +GI D+++L II  MLKAP+   +GE   P++GTPQGGILSPLL+N+VLN+LDW
Sbjct  197  IRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLNELDW  256

Query  241  WISSQWDTIKIR---------KPHTVQTKNYR-LAKAKLKRMYIVRYADDFKIFTNNHQS  290
            WI+SQW+ +  +         +   +++  YR L +++LK M  VRYADDFKIF   H+ 
Sbjct  257  WIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCATHED  316

Query  291  ATKIFHAVEGYLKNQLHLNISNEKSTITNLKRKSSDFLGFSIKSVKKSKRYVANTHVSEk  350
            A + + A E  LK++L L+IS +KS + NLKR+ SDFLGF +K  KK+K+YV  +H+S+K
Sbjct  317  AVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHMSDK  376

Query  351  kkkdilekakakikaiqkNPSGKT----VQDYNSYVLGIKNYYKIATHVTIDFAEIAFRL  406
              K   EK    +K +  ++ +++    +Q YNS V G+ +YY I+T+V+ DF+ +AF +
Sbjct  377  AYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLAFSI  436

Query  407  SKTLFNRLKSIGKYKVPTNAN---ALYKRTHRNNYRTFEIAGNHVYPLADIQTRFPQSFS  463
            +K L NRLK+    K           Y  +++  +    + G  V PL+ +Q++ +Q   
Sbjct  437  NKQLRNRLKGDLSKKGQLRNGFIKEKYGASRQMRF----LHGRPVVPLGYVQSKNAQHKR  492

Query  464  QDICNYTIKGRQKLIKSLKGNIANEMQKMLLSSNRGESMEYTDNRISRYSMQNGKCAVIG  523
            + I +YT+KGR+++ K+L  + A  M  ++ ++ +G ++EY+DNRIS Y+ Q GKCAV G
Sbjct  493  KSINKYTVKGREQIHKNLAIDTAT-MLWLMRNPVKGRTIEYADNRISLYAAQYGKCAVTG  551

Query  524  IFLIAEDVHCHHKIPKGMGGTDEFNNLIIVHEFVHRLIHATNEETIRTYMRILQLNDKQL  583
            I + ++D+HCHHK+P + GG+DE+ NLI+V   VH LIHA++E TI  Y++ L+L++KQ+
Sbjct  552  IPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLNLDNKQI  611

Query  584  NKINKLRKACNLVTLV  599
            +K+NKLR   ++  ++
Sbjct  612  EKLNKLRSMAEMPPII  627

68) BCN_1696 in NC_016771


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  406 bits (1528),  Expect = 2e-114, Method: Compositional matrix adjust.
 Identities = 281/625 (45%), Positives = 424/625 (68%), Gaps = 29/625 (4%)

Query  3    KKTKLRHSEYYDMQRKYDELYSNSLNGNNFYKLIDIIGSEENIRLAYRNIKTNKGSNTAG  62
            K+ K+R+SEYYDM+  +D LY++S +++ F  L++II SEENI+LAYR IK N GS+T+G
Sbjct  14   KQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSG  73

Query  63   VDNLTIKDIWHLNDTKIIHEVRKRLNNYQPQAVKRVLIPKEGSDKKRPVGIPTIWDRLVQ  122
            VD+ TI D+  L++   ++ +RK+++NY+P +V+RV IPK  + K RP+GIPTI DR+VQ
Sbjct  74   VDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNG-KTRPLGIPTIVDRIVQ  132

Query  123  QSILQVLEPICEAKFHNHSYGFRPNRSTHHALSRVVSLINIGHQHYCVDIDIKGFFDNVC  182
            Q ILQV+EPICEAKF ++S GFRPNRS++ A+++ + LI++ H    VD+DIKGFFDN+ 
Sbjct  133  QCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNIS  192

Query  183  HKKLLRQMWTLGIRDKSLLCVISKILKSEI---EGEGI-PNKGTPQGGIISPLLSNIVLN  238
            H KL+RQ+W+LGIRDK LLC+I  +LK+ +   +GE   P +GTPQGGI+SPLL+NIVLN
Sbjct  193  HTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLN  252

Query  239  ELDWWISSQWET------YK----PHRISTRHLGFRQYARKYTNLKCGYVVRYADDFKIM  288
            ELDWWI+SQWE       +K    ++    +  ++R   R  + LK    VRYADDFKI 
Sbjct  253  ELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRR--SRLKEMHAVRYADDFKIF  310

Query  289  CRTYDEAQRFYHATVDFLKSRLGLEInpkkskvvnlkknssvFLGFKIKVVKQGKAKFGY  348
            C T ++A R Y AT   LK RLGLEI+P KSKVVNLK++ S FLGFK+KV K+GK    Y
Sbjct  311  CATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKK---Y  367

Query  349  IAKTSMSDKAITKAKRQLKERIK----GIQKEPTSEKVTQFNSTLLGIQNYFKYAVTIYM  404
            + ++ MSDKA  KA  ++ E +K    + + ++   ++ ++NS + G+++Y+  +  +  
Sbjct  368  VVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSH  427

Query  405  DLTEVNYSLRRVIRTRLRNNMKHMKFCETSVNFKRKTKGIQPNTKIYVVQNTPLLPVTGI  464
            D++ + +S+ + +R RL+ ++      +    F +   G   + ++  ++  P++P+  +
Sbjct  428  DFSRLAFSINKQLRNRLKGDLSKKG--QLRNGFIKEKYGASRQMRF--LHGRPVVPLGYV  483

Query  465  HHKNPWNFSQVICNYTETGRNKVHSNLKAIPKDVLNQVMRTYSKNKSIEYNDNRISKYVA  524
            + KN+ +  + I +YT  GR+++H NL AI    +  +MR   K ++IEY DNRIS Y A
Sbjct  484  QSKNAQHKRKSINKYTVKGREQIHKNL-AIDTATMLWLMRNPVKGRTIEYADNRISLYAA  542

Query  525  QYGKCYVTGEEIGIERVHCHHIVPIKQGGDDKYNNLVIVDWFIHKLIHMTNLNKITHYLR  584
            QYGKC VTG  +  + +HCHH VP+ +GG D Y NL++V   +H LIH ++   I  YL+
Sbjct  543  QYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLK  602

Query  585  SFKLNKKQMDKLNVLRTKAGNEPIV  609
            S++L++KQ++KLN LR+ A   PI+
Sbjct  603  SLNLDNKQIEKLNKLRSMAEMPPII  627

69) BCE_3857 in NC_003909


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  406 bits (1528),  Expect = 2e-114, Method: Compositional matrix adjust.
 Identities = 267/619 (44%), Positives = 412/619 (67%), Gaps = 23/619 (3%)

Query  3    QKLRNNEYFGLQSIFDNLYKESKKGRYFKNIYELIISEENIRLAFRNLKSNTGSKTKGTN  62
            +K+RN+EY+++++ FD LY ESKK++ F+++ E+I SEENI+LA+R +K NTGS T G +
Sbjct  16   RKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVD  75

Query  63   GHTIKHLNKIDADKLIRITKKRLENYMPHAVRRVFIPKPNGKMRPLGIPTIEDRLIQQMF  122
             +TI +L K+  +  +R+ +K++ NY P +VRRV IPKPNGK RPLGIPTI DR++QQ +
Sbjct  76   KRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQCI  135

Query  123  LQILEPIVEAKFHPQSYGFRPKRSTHDALARCYHMVNHSHQHFVVDIDIKGFFDNVNHKK  182
            LQ++EPI EAKF  +S GFRP+RS++ A+A+C ++++  H   VVD+DIKGFFDN++H K
Sbjct  136  LQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISHTK  195

Query  183  LMRQLWTIGIRDKKVLYIIKKMLKAEV----TGEGIPAKGTPQGGILSPLLANVVLNELD  238
            L+RQ+W++GIRDKK+L IIK MLKA V         PA+GTPQGGILSPLLAN+VLNELD
Sbjct  196  LIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLNELD  255

Query  239  WWVSNQWETKPTRVPYKLKRNKTD---------ALKKTRLKPMYLVRYADDFKIFTNSYE  289
            WW+++QWE  PT+  +K + N  +         AL+++RLK M  VRYADDFKIF  + E
Sbjct  256  WWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCATHE  315

Query  290  NARKIKIAVEKWLKERLGLEISEEKSKITNLRKNGTDFLGIRFRAVQKGNAKTGYIVNSK  349
            +A +   A E WLK+RLGLEIS +KSK+ NL+++ +DFLG+    ++  +    Y+V S 
Sbjct  316  DAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGF---KLKVRKKGKKYVVRSH  372

Query  350  MDPKAKGKVLGVIRHQLVKLRKSPTPE----KVMNFNSNILGLHNYYKIATRISRDFNEI  405
            M  KA  K    + +++ KL  S+  +    ++ ++NS + GLH+YY I+T +S+DF+ +
Sbjct  373  MSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRL  432

Query  406  RHKVHPNIKSLIFRNIFVYTKETNNIIDKFYGDYNCPRFKSNGLLVYPIEAIRHDIRGQR  465
               ++ ++++ +  ++    +  N +I   YG     RF  +G  V P+  ++     ++
Sbjct  433  AFSINKQLRNRLKGDLSKKGQLRNGFIKEKYGASRQMRF-LHGRPVVPLGYVQSKNAQHK  491

Query  466  DPNFSVYNKKDRASIHKEIKRVSVREIEMFRKGIYKNKSVLYENNRLSKYVAQKGCCGIT  525
              +++ Y  K+R  IHK++   +   + + R+ + K +++ Y +NR+S Y AQ G C++T
Sbjct  492  RKSINKYTVKGREQIHKNLAIDTATMLWLMRNPV-KGRTIEYADNRISLYAAQYGKCAVT  550

Query  526  GERLTPHNAICHHIKPTEQGGSDECHNLIIINKKYHMLIHNKDPLANEDYKKMLVKFDKK  585
            G  + +H+  CHH  P  +GGSDE  NLI+++K  H+LIH     + E Y K L ++D+K
Sbjct  551  GIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSL-NLDNK  609

Query  586  ALSKLNKLRTEVGNPKLSL  604
             + KLNKLR+    P + L
Sbjct  610  QIEKLNKLRSMAEMPPIIL  628

70) Bsph_p115 in NC_010381


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  405 bits (1524),  Expect = 4e-114, Method: Compositional matrix adjust.
 Identities = 274/615 (45%), Positives = 411/615 (67%), Gaps = 23/615 (3%)

Query  5    LRHAEYYDMQSIFDDLYERSKNNATKGLNLYEHIISKNNILLAYRNIKANTGSKTAGTDG  64
            +R++EYYDM++ FD LY  SK++ T   +L E I S +NI LAYR IK NTGS T+G D 
Sbjct  18   IRNSEYYDMEGTFDRLYAESKKDKTFN-HLMEIIESEENIKLAYRTIKKNTGSDTSGVDK  76

Query  65   ITIEQYKIEDVETFVDEIRATLKNYKPQTVRRVEIPKPNGKTRPLGIPTMRDRLIQQMFK  124
             TI +      E +V  IR  + NY P  VRRVEIPKPNGKTRPLGIPT+ DR++QQ + 
Sbjct  77   RTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQCIL  136

Query  125  QILEPICEARFYNHSYGFRPNRSTHHAMGRCQFLANIALNQHVVDIDIQGFFDNVSHSKL  184
            Q++EPICEA+F ++S GFRPNRS++ A+++C  L ++    HVVD+DI+GFFDN+SH+KL
Sbjct  137  QVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISHTKL  196

Query  185  LKQMYSIGICDKRVLSVVSKMLKAPI----KGIGIPTKGTPQGGILSPLLSNIVLNDLDW  240
            ++Q+ ++GI DK++L ++  MLKAP+         P++GTPQGGILSPLL+NIVLN+LDW
Sbjct  197  IRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLNELDW  256

Query  241  WISNQWENMKTKFNYKER--------KNKVLMIKRTTTLKEMYIVRYADDFKIFTKSHKN  292
            WI++QWE+M TK ++K R        K+      R + LKEM  VRYADDFKIF  +H +
Sbjct  257  WIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCATHED  316

Query  293  AIKLYHAVKGYLKNHLNLDISNEKSKITNLRKRASEFLGFSLKVIKKGKRYVANTHVMDD  352
            A++ Y A    LK++L L+IS +KSK+ NL+++ S+FLGF LKV KKGK+YV  +H+ D 
Sbjct  317  AVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHMSDK  376

Query  353  KVKTILQK----ARKLIHEIKKNPTAKMAMNYNAYVLGIKNYYKIATHVNTDFSEIAYRL  408
              K   +K     +KL      N+      +YN+ V G+ +YY I+T+V+ DFS +A+ +
Sbjct  377  AYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLAFSI  436

Query  409  SRTLYNRLKSIGNYGIPIKPSETY--KRFNKNNFKTFEIENIHLFPIADIKTVNSTNFSQ  466
            ++ L NRLK  G+ +   +  + +   ++  +    F ++   + P++ +++ N+ +  +
Sbjct  437  NKQLRNRLK--GDLSKKGQLRNGFIKEKYGASRQMRF-LHGRPVVPLGYVQSKNAQHKRK  493

Query  467  DLCNYTKEGRLKLHKQLKNDVAIEINRLLKTISYNDNLEYADNRISRYSMQSGKCAITGD  526
             + +YT  GR ++HK+L  D A  + +L++       +EYADNRIS Y+ Q GKCA+TG 
Sbjct  494  SINKYTVKGREQIHKNLAIDTATML-WLMRNPVKGRTIEYADNRISLYAAQYGKCAVTGI  552

Query  527  FLVAEEVHCHHRIPRYMGGSDEFKNLVIVHSNVHKLIHATETETIERYKSLLQLDGKQLE  586
             + ++++HCHH++P   GGSDE+ NL++V   VH LIHA+   TIE+Y   L+LD KQ+E
Sbjct  553  PMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLNLDNKQIE  612

Query  587  KLNQFRKKCNLVALV  601
            KLN++R   ++ +++
Sbjct  613  KLNKLRSMAEMPPII  627

71) Bsph_4038 in NC_010382


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  405 bits (1524),  Expect = 4e-114, Method: Compositional matrix adjust.
 Identities = 274/615 (45%), Positives = 411/615 (67%), Gaps = 23/615 (3%)

Query  5    LRHAEYYDMQSIFDDLYERSKNNATKGLNLYEHIISKNNILLAYRNIKANTGSKTAGTDG  64
            +R++EYYDM++ FD LY  SK++ T   +L E I S +NI LAYR IK NTGS T+G D 
Sbjct  18   IRNSEYYDMEGTFDRLYAESKKDKTFN-HLMEIIESEENIKLAYRTIKKNTGSDTSGVDK  76

Query  65   ITIEQYKIEDVETFVDEIRATLKNYKPQTVRRVEIPKPNGKTRPLGIPTMRDRLIQQMFK  124
             TI +      E +V  IR  + NY P  VRRVEIPKPNGKTRPLGIPT+ DR++QQ + 
Sbjct  77   RTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQCIL  136

Query  125  QILEPICEARFYNHSYGFRPNRSTHHAMGRCQFLANIALNQHVVDIDIQGFFDNVSHSKL  184
            Q++EPICEA+F ++S GFRPNRS++ A+++C  L ++    HVVD+DI+GFFDN+SH+KL
Sbjct  137  QVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISHTKL  196

Query  185  LKQMYSIGICDKRVLSVVSKMLKAPI----KGIGIPTKGTPQGGILSPLLSNIVLNDLDW  240
            ++Q+ ++GI DK++L ++  MLKAP+         P++GTPQGGILSPLL+NIVLN+LDW
Sbjct  197  IRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLNELDW  256

Query  241  WISNQWENMKTKFNYKER--------KNKVLMIKRTTTLKEMYIVRYADDFKIFTKSHKN  292
            WI++QWE+M TK ++K R        K+      R + LKEM  VRYADDFKIF  +H +
Sbjct  257  WIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCATHED  316

Query  293  AIKLYHAVKGYLKNHLNLDISNEKSKITNLRKRASEFLGFSLKVIKKGKRYVANTHVMDD  352
            A++ Y A    LK++L L+IS +KSK+ NL+++ S+FLGF LKV KKGK+YV  +H+ D 
Sbjct  317  AVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHMSDK  376

Query  353  KVKTILQK----ARKLIHEIKKNPTAKMAMNYNAYVLGIKNYYKIATHVNTDFSEIAYRL  408
              K   +K     +KL      N+      +YN+ V G+ +YY I+T+V+ DFS +A+ +
Sbjct  377  AYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLAFSI  436

Query  409  SRTLYNRLKSIGNYGIPIKPSETY--KRFNKNNFKTFEIENIHLFPIADIKTVNSTNFSQ  466
            ++ L NRLK  G+ +   +  + +   ++  +    F ++   + P++ +++ N+ +  +
Sbjct  437  NKQLRNRLK--GDLSKKGQLRNGFIKEKYGASRQMRF-LHGRPVVPLGYVQSKNAQHKRK  493

Query  467  DLCNYTKEGRLKLHKQLKNDVAIEINRLLKTISYNDNLEYADNRISRYSMQSGKCAITGD  526
             + +YT  GR ++HK+L  D A  + +L++       +EYADNRIS Y+ Q GKCA+TG 
Sbjct  494  SINKYTVKGREQIHKNLAIDTATML-WLMRNPVKGRTIEYADNRISLYAAQYGKCAVTGI  552

Query  527  FLVAEEVHCHHRIPRYMGGSDEFKNLVIVHSNVHKLIHATETETIERYKSLLQLDGKQLE  586
             + ++++HCHH++P   GGSDE+ NL++V   VH LIHA+   TIE+Y   L+LD KQ+E
Sbjct  553  PMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLNLDNKQIE  612

Query  587  KLNQFRKKCNLVALV  601
            KLN++R   ++ +++
Sbjct  613  KLNKLRSMAEMPPII  627

72) SCI_1288 in NC_022238


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  400 bits (1505),  Expect = 1e-112, Method: Compositional matrix adjust.
 Identities = 289/637 (46%), Positives = 418/637 (66%), Gaps = 39/637 (6%)

Query  6    ERQPKRQKLRNAEYYDMQDLTDKLYQESIQGKTFNKLMQLITSENNILLAFRNIKNNKGS  65
            ER++K++K+RN+EYYDM++  D+LY ES ++KTFN LM++I SE+NI LA+R IK+N GS
Sbjct  10   ERKSKQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGS  69

Query  66   MTKGTDGKTIKYYKEWSEEQFVKYFQDKFKNYHPKSVLRVEIPKTGQPDKTRPLGIPCMD  125
             T G D +TI      SEE++V+ ++ +F NYHP +V RVEIPK    +KTRPLGIP + 
Sbjct  70   DTSGVDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPN--GKTRPLGIPTIV  127

Query  126  DRIVQQCIIQILEPVCEAKFHAHSYGFRPNRSASHAIARVQSLMNVSKLHYVVDVDIKGF  185
            DRIVQQCI+Q++EP+CEAKF  +S GFRPNRSA  AIA+   L++V  L  VVD+DIKGF
Sbjct  128  DRIVQQCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGF  187

Query  186  FDNVNHGKLIKQIWTMGIRDk----slisiigkilkskiegigiPEKGTPQGGIISPLLS  241
            FDN++H KLI+QIW++GIRDK     +  ++   +         P +GTPQGGI+SPLL+
Sbjct  188  FDNISHTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLA  247

Query  242  NIVLNELDWWLSDQWETIQTRHKYTA----------SHKYDALKKSKLKELFFVRYADDF  291
            NIVLNELDWW++ QWE + T+ K+ +          SH Y AL++S+LKE+  VRYADDF
Sbjct  248  NIVLNELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDF  307

Query  292  KILCRDYKTAQKIFVAVKNWLFERLELEISPEKLKITNVRKGKTDFLGFLLYVSKKGKKY  351
            KI+C     A + + A   WL +RL LEISP+K K+ N+++  +DFLGF L V KKGKKY
Sbjct  308  KIFCATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKY  367

Query  352  VSRSNVSDka--kkamkiklkeqikeiqkDTSPH--QVNQLNSMILGMHNYYNVATGCSI  407
            V RS++SDKA  K   K+    +      D +++  Q+++ NS++ G+H+YY ++T  S 
Sbjct  368  VVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSH  427

Query  408  DFREINFVVSKSLKHRLREktkkakrnkkakkllsgkvpkSKTYERFYGRYNQKPKIVAG  467
            DF  + F ++K L++RL+    K  + +++                 YG   Q  +++ G
Sbjct  428  DFSRLAFSINKQLRNRLKGDLSKKGQLRNGFIKEK------------YGASRQM-RFLHG  474

Query  468  IHIFPIYGCRFVTPRMFS---REVNKYTPQGRVLIHKNLSTGRYLVEYLLEMKEYDKSVE  524
              + P+    +V ++      + +NKYT +GR  IHKNL+ +   +  L+     ++++E
Sbjct  475  RPVVPL---GYVQSKNAQHKRKSINKYTVKGREQIHKNLAIDTATMLWLMRNPVKGRTIE  531

Query  525  YNDNRISLMAGQNGKCAVTGEALNIFNMECHHKKPKHLGGTDEYKNLVWLRTEVHKLIHA  584
            Y DNRISL A+Q GKCAVTG ++N  +++CHHK P   GG+DEY NL+ +   VH LIHA
Sbjct  532  YADNRISLYAAQYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHA  591

Query  585  TDKDTIEKYLSILKLDEKALKKVNSLRLLAENLEIVV  621
            +   TIEKYL  L+LD+K + K+N LR +AE   I++
Sbjct  592  SSEPTIEKYLKSLNLDNKQIEKLNKLRSMAEMPPIIL  628

73) SCRE_1229 in NC_022236


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  400 bits (1505),  Expect = 1e-112, Method: Compositional matrix adjust.
 Identities = 289/637 (46%), Positives = 418/637 (66%), Gaps = 39/637 (6%)

Query  6    ERQPKRQKLRNAEYYDMQDLTDKLYQESIQGKTFNKLMQLITSENNILLAFRNIKNNKGS  65
            ER++K++K+RN+EYYDM++  D+LY ES ++KTFN LM++I SE+NI LA+R IK+N GS
Sbjct  10   ERKSKQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGS  69

Query  66   MTKGTDGKTIKYYKEWSEEQFVKYFQDKFKNYHPKSVLRVEIPKTGQPDKTRPLGIPCMD  125
             T G D +TI      SEE++V+ ++ +F NYHP +V RVEIPK    +KTRPLGIP + 
Sbjct  70   DTSGVDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPN--GKTRPLGIPTIV  127

Query  126  DRIVQQCIIQILEPVCEAKFHAHSYGFRPNRSASHAIARVQSLMNVSKLHYVVDVDIKGF  185
            DRIVQQCI+Q++EP+CEAKF  +S GFRPNRSA  AIA+   L++V  L  VVD+DIKGF
Sbjct  128  DRIVQQCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGF  187

Query  186  FDNVNHGKLIKQIWTMGIRDk----slisiigkilkskiegigiPEKGTPQGGIISPLLS  241
            FDN++H KLI+QIW++GIRDK     +  ++   +         P +GTPQGGI+SPLL+
Sbjct  188  FDNISHTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLA  247

Query  242  NIVLNELDWWLSDQWETIQTRHKYTA----------SHKYDALKKSKLKELFFVRYADDF  291
            NIVLNELDWW++ QWE + T+ K+ +          SH Y AL++S+LKE+  VRYADDF
Sbjct  248  NIVLNELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDF  307

Query  292  KILCRDYKTAQKIFVAVKNWLFERLELEISPEKLKITNVRKGKTDFLGFLLYVSKKGKKY  351
            KI+C     A + + A   WL +RL LEISP+K K+ N+++  +DFLGF L V KKGKKY
Sbjct  308  KIFCATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKY  367

Query  352  VSRSNVSDka--kkamkiklkeqikeiqkDTSPH--QVNQLNSMILGMHNYYNVATGCSI  407
            V RS++SDKA  K   K+    +      D +++  Q+++ NS++ G+H+YY ++T  S 
Sbjct  368  VVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSH  427

Query  408  DFREINFVVSKSLKHRLREktkkakrnkkakkllsgkvpkSKTYERFYGRYNQKPKIVAG  467
            DF  + F ++K L++RL+    K  + +++                 YG   Q  +++ G
Sbjct  428  DFSRLAFSINKQLRNRLKGDLSKKGQLRNGFIKEK------------YGASRQM-RFLHG  474

Query  468  IHIFPIYGCRFVTPRMFS---REVNKYTPQGRVLIHKNLSTGRYLVEYLLEMKEYDKSVE  524
              + P+    +V ++      + +NKYT +GR  IHKNL+ +   +  L+     ++++E
Sbjct  475  RPVVPL---GYVQSKNAQHKRKSINKYTVKGREQIHKNLAIDTATMLWLMRNPVKGRTIE  531

Query  525  YNDNRISLMAGQNGKCAVTGEALNIFNMECHHKKPKHLGGTDEYKNLVWLRTEVHKLIHA  584
            Y DNRISL A+Q GKCAVTG ++N  +++CHHK P   GG+DEY NL+ +   VH LIHA
Sbjct  532  YADNRISLYAAQYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHA  591

Query  585  TDKDTIEKYLSILKLDEKALKKVNSLRLLAENLEIVV  621
            +   TIEKYL  L+LD+K + K+N LR +AE   I++
Sbjct  592  SSEPTIEKYLKSLNLDNKQIEKLNKLRSMAEMPPIIL  628

74) SCR2_1229 in NC_022245


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  400 bits (1505),  Expect = 1e-112, Method: Compositional matrix adjust.
 Identities = 289/637 (46%), Positives = 418/637 (66%), Gaps = 39/637 (6%)

Query  6    ERQPKRQKLRNAEYYDMQDLTDKLYQESIQGKTFNKLMQLITSENNILLAFRNIKNNKGS  65
            ER++K++K+RN+EYYDM++  D+LY ES ++KTFN LM++I SE+NI LA+R IK+N GS
Sbjct  10   ERKSKQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGS  69

Query  66   MTKGTDGKTIKYYKEWSEEQFVKYFQDKFKNYHPKSVLRVEIPKTGQPDKTRPLGIPCMD  125
             T G D +TI      SEE++V+ ++ +F NYHP +V RVEIPK    +KTRPLGIP + 
Sbjct  70   DTSGVDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPN--GKTRPLGIPTIV  127

Query  126  DRIVQQCIIQILEPVCEAKFHAHSYGFRPNRSASHAIARVQSLMNVSKLHYVVDVDIKGF  185
            DRIVQQCI+Q++EP+CEAKF  +S GFRPNRSA  AIA+   L++V  L  VVD+DIKGF
Sbjct  128  DRIVQQCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGF  187

Query  186  FDNVNHGKLIKQIWTMGIRDk----slisiigkilkskiegigiPEKGTPQGGIISPLLS  241
            FDN++H KLI+QIW++GIRDK     +  ++   +         P +GTPQGGI+SPLL+
Sbjct  188  FDNISHTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLA  247

Query  242  NIVLNELDWWLSDQWETIQTRHKYTA----------SHKYDALKKSKLKELFFVRYADDF  291
            NIVLNELDWW++ QWE + T+ K+ +          SH Y AL++S+LKE+  VRYADDF
Sbjct  248  NIVLNELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDF  307

Query  292  KILCRDYKTAQKIFVAVKNWLFERLELEISPEKLKITNVRKGKTDFLGFLLYVSKKGKKY  351
            KI+C     A + + A   WL +RL LEISP+K K+ N+++  +DFLGF L V KKGKKY
Sbjct  308  KIFCATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKY  367

Query  352  VSRSNVSDka--kkamkiklkeqikeiqkDTSPH--QVNQLNSMILGMHNYYNVATGCSI  407
            V RS++SDKA  K   K+    +      D +++  Q+++ NS++ G+H+YY ++T  S 
Sbjct  368  VVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSH  427

Query  408  DFREINFVVSKSLKHRLREktkkakrnkkakkllsgkvpkSKTYERFYGRYNQKPKIVAG  467
            DF  + F ++K L++RL+    K  + +++                 YG   Q  +++ G
Sbjct  428  DFSRLAFSINKQLRNRLKGDLSKKGQLRNGFIKEK------------YGASRQM-RFLHG  474

Query  468  IHIFPIYGCRFVTPRMFS---REVNKYTPQGRVLIHKNLSTGRYLVEYLLEMKEYDKSVE  524
              + P+    +V ++      + +NKYT +GR  IHKNL+ +   +  L+     ++++E
Sbjct  475  RPVVPL---GYVQSKNAQHKRKSINKYTVKGREQIHKNLAIDTATMLWLMRNPVKGRTIE  531

Query  525  YNDNRISLMAGQNGKCAVTGEALNIFNMECHHKKPKHLGGTDEYKNLVWLRTEVHKLIHA  584
            Y DNRISL A+Q GKCAVTG ++N  +++CHHK P   GG+DEY NL+ +   VH LIHA
Sbjct  532  YADNRISLYAAQYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHA  591

Query  585  TDKDTIEKYLSILKLDEKALKKVNSLRLLAENLEIVV  621
            +   TIEKYL  L+LD+K + K+N LR +AE   I++
Sbjct  592  SSEPTIEKYLKSLNLDNKQIEKLNKLRSMAEMPPIIL  628

75) BMB171_P0101 in NC_014172


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  399 bits (1501),  Expect = 3e-112, Method: Compositional matrix adjust.
 Identities = 284/637 (45%), Positives = 424/637 (67%), Gaps = 41/637 (6%)

Query  3    KKTKLRHSEYYDMQTKYDELYSNSLNGNNFYKLIDIIGSEENIRLAYRNIKTNKGSNTAG  62
            K+ K+R+SEYYDM+  +D LY++S +++ F  L++II SEENI+LAYR IK N GS+T+G
Sbjct  14   KQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSG  73

Query  63   VDNLTIKDIWHLNDTKIVHEVRKRLNNYQPQAVKRVLIPKEGSDKKRPLGIPTIWDRLVQ  122
            VD+ TI D+  L++   V+ +RK+++NY+P +V+RV IPK  + K RPLGIPTI DR+VQ
Sbjct  74   VDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNG-KTRPLGIPTIVDRIVQ  132

Query  123  QSILQVLEPICEAKFHNHSYGFRPNRSTHHALSRVVSLINIGHQHYCVDIDIKGFFDNVC  182
            Q ILQV+EPICEAKF ++S GFRPNRS++ A+++ + LI++ H    VD+DIKGFFDN+ 
Sbjct  133  QCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNIS  192

Query  183  HKKLLRQMWTLGIRDKSLLCVISKILKSEI---EGEGI-PNKGTPQGGIISPLLSNIVLN  238
            H KL+RQ+W+LGIRDK LLC+I  +LK+ +   +GE   P +GTPQGGI+SPLL+NIVLN
Sbjct  193  HTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLN  252

Query  239  ELDWWISSQWET------YK----PHRISTRHLGFRQYARKYTNLKCGYVVRYADDFKIM  288
            ELDWWI+SQWE       +K    ++    +  ++R   R  + LK    VRYADDFKI 
Sbjct  253  ELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRR--SRLKEMHAVRYADDFKIF  310

Query  289  CRTYDEAQRFYHATVDFLKSRLGLEINAkkskvvnlkknssDFLGFKIKVVKQGKAKFGH  348
            C T ++A R Y AT   LK RLGLEI++ KSKVVNLK++ SDFLGFK+KV K+GK     
Sbjct  311  CATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKK---Y  367

Query  349  IAKTSMSDKAITKAKRQLKERIK----GIQKEPTSEKVTQFNSTLLGIQNYFKYAVTIYM  404
            + ++ MSDKA  KA  ++ E +K    + + ++   ++ ++NS + G+++Y+  +  +  
Sbjct  368  VVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSH  427

Query  405  DLTEVNYSLRRVMRTRLRNNMKHMKFCETSVNFKRKTKGIQPNSKIYVVQNTPLLPVTGI  464
            D++ + +S+ + +R RL+ ++      +    F +   G   + ++  ++  P++P+  +
Sbjct  428  DFSRLAFSINKQLRNRLKGDLSKKG--QLRNGFIKEKYGASRQMRF--LHGRPVVPLGYV  483

Query  465  HHKNPWNFSQVICNYTETGRNKVHSNLKAIPKDVLNQVMRTYSKNKSIEYNDNRISKYVA  524
            + KN+ +  + I +YT  GR+++H NL AI    +  +MR   K ++IEY DNRIS Y A
Sbjct  484  QSKNAQHKRKSINKYTVKGREQIHKNL-AIDTATMLWLMRNPVKGRTIEYADNRISLYAA  542

Query  525  QYGKCYVTGEEIGIERVHCHHIVPVKQGGDDKYNNLVIVDWFIHKLIHMTNLNKITHYLR  584
            QYGKC VTG  +  + +HCHH VPV +GG D Y NL++V   +H LIH +          
Sbjct  543  QYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHAS----------  592

Query  585  SFNLNKITHYLRSFNLNKKQMDKLNVLRTKAGNEPIV  621
              +   I  YL+S+NL++KQ++KLN LR+ A   PI+
Sbjct  593  --SEPTIEKYLKSLNLDNKQIEKLNKLRSMAEMPPII  627

76) CD630_05060 in NC_009089


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  397 bits (1493),  Expect = 1e-111, Method: Compositional matrix adjust.
 Identities = 285/618 (47%), Positives = 420/618 (68%), Gaps = 23/618 (3%)

Query  6    SNKKALRFNEYYDTQKIQDELYQLSAEGSHVFRDLMSYITQEENILLAYRNIKSNKGSKT  65
            S+++ +R +EYYD +   D LY   +     F +LM  I  EENI LAYR IK N GS T
Sbjct  13   SKQRKIRNSEYYDMEGTFDRLYA-ESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDT  71

Query  66   AGTNKRTIIDVGEENPYQLVQYVQNRFNNFQPHSIRRVEIPKPNGKTRPLGIPTIEDRLV  125
            +G +KRTI D++  +  + V+ ++++F+N++P ++RRVEIPKPNGKTRPLGIPTI DR+V
Sbjct  72   SGVDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIV  131

Query  126  QQCIKQILEPILEAKFHKHSYGFRPERSSHHAIAIFQQWT-FKGFHYVVDIDIKGFFDNV  184
            QQCI Q++EPI EAKF  +S GFRP+RS++ AIA   +    + +  VVD+DIKGFFDN+
Sbjct  132  QQCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNI  191

Query  185  NHGKLLKQLWTMKIRDKTFISILSRMLKAEV---KGIGK-STKGTPQGGILSPLLANVVL  240
            +H KL++Q+W++ IRDK ++ I+  MLKA V   +G    +++GTPQGGILSPLLAN+VL
Sbjct  192  SHTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVL  251

Query  241  NELDWWIDSQWDGFPTKRKYSSLLS------KTQSIR--KYSNLKEIKIVRYADDFKIMC  292
            NELDWWI SQW+  PTK K+ +  +      K+++ R  + S LKE+  VRYADDFKI C
Sbjct  252  NELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFC  311

Query  293  KDYHTAQKIFLATKQWLKVRLDLDISPEKSKVTNLRKNYSDflgfklkvkkgkANGYTNR  352
               + A + + AT  WLK RL+L+ISP+KSKV NL+++YSDFLGFKLKV+K   + Y  R
Sbjct  312  ATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKK-YVVR  370

Query  353  SRMCDKAKINAVDKLKNNIKTIA----ANPTVDNVNKYNSVVLGLHNYYKIATLVNLDFV  408
            S+M DKA  +A +K+ +++K +A     N+   +++KYNSVV GLH+YY I+T V+ DF 
Sbjct  371  SHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFS  430

Query  409  DIAFTVNKSLDCRTKNIRNKHGTLTSTYQKFYKQY--NWKKRFIANMILFPIAGIKFTMP  466
             +AF++NK L  R K   +K G L + + K   +Y  +++ RF+    + P++ ++   +
Sbjct  431  RLAFSINKQLRNRLKGDLSKKGQLRNGFIK--EKYGASRQMRFLHGRPVVPLGYVQSKNA  488

Query  467  RIFPKDWNRYTPEGRLFIHQRLKMDMHTVYYLLENSNPNKSVEFNDNRISLFIAQQGKCH  526
            +   K  N+YT  GR  IH+ L +D  T+  L+ N+   +++E+ DNRISL+ AQ GKC 
Sbjct  489  QHKRKSINKYTVKGREQIHKNLAIDTATMLWLMRNPVKGRTIEYADNRISLYAAQYGKCA  548

Query  527  VSGENLSKDNMEVHHIKPLSLGGNDNYKNLVIVTKETHKLIHATKRETIVHYLPLVLKKE  586
            V+G  ++ ++++ HH  P+S GG+D+Y NL++V+K  H LIHA+   TI  YL  +   +
Sbjct  549  VTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLNLDN  608

Query  587  RSLEKLNKLRALAGNSEI  604
            + +EKLNKLR++A  + I
Sbjct  609  KQIEKLNKLRSMAEMPPI  626

77) BCN_3944 in NC_016771


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  397 bits (1494),  Expect = 1e-111, Method: Compositional matrix adjust.
 Identities = 279/625 (45%), Positives = 419/625 (68%), Gaps = 29/625 (4%)

Query  3    KKTKLRHSEYYDMQRKYDELYSNSLNGNNFYKLIDIIGSEENIRLAYRNIKTNKGSNTAG  62
            K+ K+R+SEYYDM+  +D LY++S +++ F  L++II SEENI+LAYR IK N GS+T+G
Sbjct  14   KQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSG  73

Query  63   VDNLTIKDIWHLNDTKIIHEVRKRLNNYQPQAVKRVLIPKEGSDKKRPLGIPTIWDRLVQ  122
            VD+ TI D+  L++   ++ +RK+++NY+P +V+RV IPK  + K RPLGIPTI DR+VQ
Sbjct  74   VDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNG-KTRPLGIPTIVDRIVQ  132

Query  123  QSILQVLEPICEAKFHNHSYGFRPNRSTHHALSRVVSLINIGHQHYCVDIDIKGFFDNVC  182
            Q ILQV+EPICEAKF ++S GFRPNRS++ A+++ + LI++ H    VD+DIKGFFDN+ 
Sbjct  133  QCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNIS  192

Query  183  HKKLLRQMWTLGIRDKSLLCVISKILKSEI---EGEGI-PNKGTPQGGIISPLLSNIVLN  238
            H KL+RQ+W+LGIRDK LLC+I  +LK+ +   +GE   P +GTPQGGI+SPLL+NIVLN
Sbjct  193  HTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLN  252

Query  239  ELDWWISSQWET------YK----PHRISTRHLGFRQYARKYTNLKCGYVVRYADDFKIM  288
            ELDWWI+SQWE       +K    ++    +  ++R   R  + LK    VRYADDFKI 
Sbjct  253  ELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRR--SRLKEMHAVRYADDFKIF  310

Query  289  CRTYDEAQRFYHATVDFLKSRLGLEInpkkskvvnlkknssvFLGFKIKVVKQGKAKFGY  348
            C T ++A R Y AT   LK RLGLEI+P KSKVVNLK++ S FLGFK+KV K+GK    Y
Sbjct  311  CATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKK---Y  367

Query  349  IAKTSMSDKAITKAKRQLKERIK----GIQKEPTSEKVTQFNSTLLGIQNYFKYAVTIYM  404
            + ++ MSDKA  KA  ++ E +K    + + ++   ++ ++NS + G+++Y+  +  +  
Sbjct  368  VVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSH  427

Query  405  DLTEVNYSLRRVIRTRLRNNMKHMKFCETSVNFKRKTKGIQPNTKIYVVQNTPLLPVTGI  464
            D++ + +S+ + +R RL+ ++      +    F +   G   + ++  ++  P++P+  +
Sbjct  428  DFSRLAFSINKQLRNRLKGDLSKKG--QLRNGFIKEKYGASRQMRF--LHGRPVVPLGYV  483

Query  465  HHKNPWIFRRLSVTIRKRGVIKVHSNLKAIPKDVLNQVMRTYSKNKSIEYNDNRISKYVA  524
            + KN+   R+       +G  ++H NL AI    +  +MR   K ++IEY DNRIS Y A
Sbjct  484  QSKNAQHKRKSINKYTVKGREQIHKNL-AIDTATMLWLMRNPVKGRTIEYADNRISLYAA  542

Query  525  QYGKCYVTGEEIGIERVHCHHIVPIKQGGDDKYNNLVIVDWFIHKLIHMTNLNKITHYLR  584
            QYGKC VTG  +  + +HCHH VP+ +GG D Y NL++V   +H LIH ++   I  YL+
Sbjct  543  QYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLK  602

Query  585  SFKLNKKQMDKLNVLRTKAGNEPIV  609
            S++L++KQ++KLN LR+ A   PI+
Sbjct  603  SLNLDNKQIEKLNKLRSMAEMPPII  627

78) BCA_3916 in NC_012472


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  393 bits (1477),  Expect = 2e-110, Method: Compositional matrix adjust.
 Identities = 253/590 (43%), Positives = 392/590 (67%), Gaps = 22/590 (3%)

Query  3    QKLRNNEYFGLQSTFDNLYEESKKGRYFKNIYELIISEENIRLAFRNLKSNIGSKTKGTN  62
            +K+RN+EY+++++TFD LY ESKK++ F+++ E+I SEENI+LA+R +K N GS T G +
Sbjct  16   RKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVD  75

Query  63   GHTIKHLNKIDADKLIRLTQKRLENYMPHAVRRLFISKPNGKMRPLGIPTIEDRLIQQMF  122
             +TI +L K+  +  +RL +K++ NY P +VRR+ I+KPNGK RPLGIPTI DR++QQ +
Sbjct  76   KRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQCI  135

Query  123  QQVLEPIVEGKFHPQSYGFRPKRGTHDALARCYHMVNHSHQHFVVDIDIKGFFDNVNHKK  182
             QV+EPI E+KF  +S GFRP+R+++ A+A+C ++++  H   VVD+DIKGFFDN++H K
Sbjct  136  LQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISHTK  195

Query  183  LMRQLWTIGIRDKKVLSIIKKMLKAEV----TGEGIPVKGTPQGGILSPLLANVVLNELD  238
            L+RQ+W++GIRDKK+L IIK MLKA V         P +GTPQGGILSPLLAN+VLNELD
Sbjct  196  LIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLNELD  255

Query  239  WWVSNQWETKPTRVPYKLKRNKTD---------ALKKTRLKPMYLVRYADDFKIFTNSYD  289
            WW+++QWE  PT+  +K + N  +         AL+++RLK M  VRYADDFKIF  + +
Sbjct  256  WWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCATHE  315

Query  290  NARKIKIAVEKWLKERLGLEISEEKSKITNLRKNGTDFLGIRFRAVQKGNAKTGYIVNSK  349
            +A +   A E WLK+RLGLEIS +KSK+ NL+++ +DFLG+    ++  +    Y+V S 
Sbjct  316  DAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGF---KLKVRKKGKKYVVRSH  372

Query  350  MDPKAKDKVLGVIRHQLVKLRKSPTPE----KVMNFNSNILGLHNYYKIATRISQDFNEL  405
            M  KA  K    + +++ KL  S+  +    ++ ++NS + GLH+YY I+T +S+DF+ L
Sbjct  373  MSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRL  432

Query  406  RHKIHPNIKSLMFRNIFVYTIETNHIIDKFYGDYNCPRFKSNGLLVYPIEAIRHDIRGQR  465
               I+ ++++ +  ++       N +I   YG     RF  +G  V P+  ++     ++
Sbjct  433  AFSINKQLRNRLKGDLSKKGQLRNGFIKEKYGASRQMRF-LHGRPVVPLGYVQSKNAQHK  491

Query  466  DPNFSVYNKKDRASIHKEIKHVSVREIEMFRKGIYKAKSVLYENNRLSKYVAQKGCCGIT  525
              +++ Y  K+R  IHK++   +   + + R+ + K++++ Y +NR+S Y AQ G C++T
Sbjct  492  RKSINKYTVKGREQIHKNLAIDTATMLWLMRNPV-KGRTIEYADNRISLYAAQYGKCAVT  550

Query  526  GERLTPHNAICHHIKPTEQGGSDEYHNLIIINKKYHTLIHNKDPLANEDY  575
            G  + +H+  CHH  P  +GGSDEY NLI+++K  H LIH     + E Y
Sbjct  551  GIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKY  600

79) bcf_18955 in NC_016779


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  393 bits (1478),  Expect = 2e-110, Method: Compositional matrix adjust.
 Identities = 253/590 (43%), Positives = 393/590 (67%), Gaps = 22/590 (3%)

Query  3    QKLRNNEYFGLQSTFDNLYEESKKGRYFKNIYELIISEENIRLAFRNLKSNIGSKTKGTN  62
            +K+RN+EY+++++TFD LY ESKK++ F+++ E+I SEENI+LA+R +K N GS T G +
Sbjct  16   RKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVD  75

Query  63   GHTIKHLNKIDADKLIRLTQKRLENYMPHAVRRLFISKPNGKMRPLGIPTIEDRLIQQMF  122
             +TI +L K+  +  +RL +K++ NY P +VRR+ I+KPNGK RPLGIPTI DR++QQ +
Sbjct  76   KRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQCI  135

Query  123  QQVLEPIVEGKFHPQSYGFRPKRGTHDALARCYHMVNHSHQHFVVDIDIKGFFDNVNHKK  182
             QV+EPI E+KF  +S GFRP+R+++ A+A+C ++++  H   VVD+DIKGFFDN++H K
Sbjct  136  LQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISHTK  195

Query  183  LMRQLWTIGIRDKKVLSIIKKMLKAEV----TGEGIPVKGTPQGGILSPLLANVVLNELD  238
            L+RQ+W++GIRDKK+L IIK MLKA V         P +GTPQGGILSPLLAN+VLNELD
Sbjct  196  LIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLNELD  255

Query  239  WWVSNQWETKPTRVPYKLKRNKTD---------ALKKTRLKPMYLVRYADDFKIFTNSYD  289
            WW+++QWE  PT+  +K + N  +         AL+++RLK M  VRYADDFKIF  + +
Sbjct  256  WWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCATHE  315

Query  290  NARKIKIAVEKWLKERLGLEISEEKSKITNLRKNGTDFLGIRFRAVQKGNAKTGYIVNSK  349
            +A +   A E WLK+RLGLEIS +KSK+ NL+++ +DFLG+    ++  +    Y+V S 
Sbjct  316  DAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGF---KLKVRKKGKKYVVRSH  372

Query  350  MDPKAKDKVLGVIRHQLVKLRKSPTPE----KVMNFNSNILGLHNYYKIATRISQDFNEL  405
            M  KA  K    + +++ KL  S+  +    ++ ++NS + GLH+YY I+T +S+DF+ L
Sbjct  373  MSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRL  432

Query  406  RHKIHPNIKSLMFRNIFVYTIETNHIIDKFYGDYNCPRFKSNGLLVYPIEAIRHDIRGQR  465
               I+ ++++ +  ++       N +I   YG     RF  +G  V P+  ++     ++
Sbjct  433  AFSINKQLRNRLKGDLSKKGQLRNGFIKEKYGASRQMRF-LHGRPVVPLGYVQSKNAQHK  491

Query  466  DPNFSVYNKKDRASIHKEIKHVSVREIEMFRKGIYKAKSVLYENNRLSKYVAQKGCCGIT  525
              +++ Y  K+R  IHK++   +   + + R+ + K++++ Y +NR+S Y AQ G C++T
Sbjct  492  RKSINKYTVKGREQIHKNLAIDTATMLWLMRNPV-KGRTIEYADNRISLYAAQYGKCAVT  550

Query  526  GERLTPHNAICHHIKPTGQGGSDEYHNLIIINKKYHTLIHNKDPLANEDY  575
            G  + +H+  CHH  P ++GGSDEY NLI+++K  H LIH     + E Y
Sbjct  551  GIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKY  600

80) BALH_3447 in NC_008600


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  393 bits (1479),  Expect = 2e-110, Method: Compositional matrix adjust.
 Identities = 253/590 (43%), Positives = 393/590 (67%), Gaps = 22/590 (3%)

Query  7    QKLRNNEYFGLQSTFDNLYEESKKGRYFKNIYELIISEENIRLAFRNLKSNIGSKTKGTN  66
            +K+RN+EY+++++TFD LY ESKK++ F+++ E+I SEENI+LA+R +K N GS T G +
Sbjct  16   RKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVD  75

Query  67   GHTIKHLNKIDADKLIRLTQKRLENYMPHAVRRLFISKPNGKMRPLGIPTIEDRLIQQMF  126
             +TI +L K+  +  +RL +K++ NY P +VRR+ I+KPNGK RPLGIPTI DR++QQ +
Sbjct  76   KRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQCI  135

Query  127  QQVLEPIVEGKFHPQSYGFRPKRGTHDALARCYHMVNHSHQHFVVDIDIKGFFDNVNHKK  186
             QV+EPI E+KF  +S GFRP+R+++ A+A+C ++++  H   VVD+DIKGFFDN++H K
Sbjct  136  LQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISHTK  195

Query  187  LMRQLWTIGIRDKKVLSIIKKMLKAEV----TGEGIPVKGTPQGGILSPLLANVVLNELD  242
            L+RQ+W++GIRDKK+L IIK MLKA V         P +GTPQGGILSPLLAN+VLNELD
Sbjct  196  LIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLNELD  255

Query  243  WWVSNQWETKPTRVPYKLKRNKTD---------ALKKTRLKPMYLVRYADDFKIFTNSYD  293
            WW+++QWE  PT+  +K + N  +         AL+++RLK M  VRYADDFKIF  + +
Sbjct  256  WWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCATHE  315

Query  294  NARKIKIAVEKWLKERLGLEISEEKSKITNLRKNGTDFLGIRFRAVQKGNAKTGYIVNSK  353
            +A +   A E WLK+RLGLEIS +KSK+ NL+++ +DFLG+    ++  +    Y+V S 
Sbjct  316  DAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGF---KLKVRKKGKKYVVRSH  372

Query  354  MDPKAKDKVLGVIRHQLVKLRKSPTPE----KVMNFNSNILGLHNYYKIATRISQDFNEL  409
            M  KA  K    + +++ KL  S+  +    ++ ++NS + GLH+YY I+T +S+DF+ L
Sbjct  373  MSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRL  432

Query  410  RHKIHPNIKSLMFRNIFVYTIETNHIIDKFYGDYNCPRFKSNGLLVYPIEAIRHDIRGQR  469
               I+ ++++ +  ++       N +I   YG     RF  +G  V P+  ++     ++
Sbjct  433  AFSINKQLRNRLKGDLSKKGQLRNGFIKEKYGASRQMRF-LHGRPVVPLGYVQSKNAQHK  491

Query  470  DPNFSVYNKKDRASIHKEIKHVSVREIEMFRKGIYKAKSVLYENNRLSKYVAQKGCCGIT  529
              +++ Y  K+R  IHK++   +   + + R+ + K++++ Y +NR+S Y AQ G C++T
Sbjct  492  RKSINKYTVKGREQIHKNLAIDTATMLWLMRNPV-KGRTIEYADNRISLYAAQYGKCAVT  550

Query  530  GERLTPHNAICHHIKPTGQGGSDEYHNLIIINKKYHTLIHNKDPLANEDY  579
            G  + +H+  CHH  P ++GGSDEY NLI+++K  H LIH     + E Y
Sbjct  551  GIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKY  600

81) YBT020_18725 in NC_017200


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  393 bits (1479),  Expect = 2e-110, Method: Compositional matrix adjust.
 Identities = 253/590 (43%), Positives = 393/590 (67%), Gaps = 22/590 (3%)

Query  7    QKLRNNEYFGLQSTFDNLYEESKKGRYFKNIYELIISEENIRLAFRNLKSNIGSKTKGTN  66
            +K+RN+EY+++++TFD LY ESKK++ F+++ E+I SEENI+LA+R +K N GS T G +
Sbjct  16   RKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVD  75

Query  67   GHTIKHLNKIDADKLIRLTQKRLENYMPHAVRRLFISKPNGKMRPLGIPTIEDRLIQQMF  126
             +TI +L K+  +  +RL +K++ NY P +VRR+ I+KPNGK RPLGIPTI DR++QQ +
Sbjct  76   KRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQCI  135

Query  127  QQVLEPIVEGKFHPQSYGFRPKRGTHDALARCYHMVNHSHQHFVVDIDIKGFFDNVNHKK  186
             QV+EPI E+KF  +S GFRP+R+++ A+A+C ++++  H   VVD+DIKGFFDN++H K
Sbjct  136  LQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISHTK  195

Query  187  LMRQLWTIGIRDKKVLSIIKKMLKAEV----TGEGIPVKGTPQGGILSPLLANVVLNELD  242
            L+RQ+W++GIRDKK+L IIK MLKA V         P +GTPQGGILSPLLAN+VLNELD
Sbjct  196  LIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLNELD  255

Query  243  WWVSNQWETKPTRVPYKLKRNKTD---------ALKKTRLKPMYLVRYADDFKIFTNSYD  293
            WW+++QWE  PT+  +K + N  +         AL+++RLK M  VRYADDFKIF  + +
Sbjct  256  WWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCATHE  315

Query  294  NARKIKIAVEKWLKERLGLEISEEKSKITNLRKNGTDFLGIRFRAVQKGNAKTGYIVNSK  353
            +A +   A E WLK+RLGLEIS +KSK+ NL+++ +DFLG+    ++  +    Y+V S 
Sbjct  316  DAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGF---KLKVRKKGKKYVVRSH  372

Query  354  MDPKAKDKVLGVIRHQLVKLRKSPTPE----KVMNFNSNILGLHNYYKIATRISQDFNEL  409
            M  KA  K    + +++ KL  S+  +    ++ ++NS + GLH+YY I+T +S+DF+ L
Sbjct  373  MSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRL  432

Query  410  RHKIHPNIKSLMFRNIFVYTIETNHIIDKFYGDYNCPRFKSNGLLVYPIEAIRHDIRGQR  469
               I+ ++++ +  ++       N +I   YG     RF  +G  V P+  ++     ++
Sbjct  433  AFSINKQLRNRLKGDLSKKGQLRNGFIKEKYGASRQMRF-LHGRPVVPLGYVQSKNAQHK  491

Query  470  DPNFSVYNKKDRASIHKEIKHVSVREIEMFRKGIYKAKSVLYENNRLSKYVAQKGCCGIT  529
              +++ Y  K+R  IHK++   +   + + R+ + K++++ Y +NR+S Y AQ G C++T
Sbjct  492  RKSINKYTVKGREQIHKNLAIDTATMLWLMRNPV-KGRTIEYADNRISLYAAQYGKCAVT  550

Query  530  GERLTPHNAICHHIKPTGQGGSDEYHNLIIINKKYHTLIHNKDPLANEDY  579
            G  + +H+  CHH  P ++GGSDEY NLI+++K  H LIH     + E Y
Sbjct  551  GIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKY  600

82) matK in NC_017543


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  384 bits (1444),  Expect = 1e-107, Method: Compositional matrix adjust.
 Identities = 273/650 (42%), Positives = 417/650 (65%), Gaps = 55/650 (8%)

Query  2    AKRLKLRHNEYYNFQDILDELYTLSQQGKYFNNLIQTMKDEKNILLAYRNIKRNGGRNTP  61
            +K+ K+R++EYY+ ++ +D LY+ S+++K FN+L++ +  E NI LAYR IK+N G +T+
Sbjct  13   SKQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTS  72

Query  62   GVDGLTMQDIAKLHPDEVVARVQDMFRFYVPKPVRRKMIDKGNGKQRPLGIPCIWDRLFQ  121
            GVD  T+ D+AKL  +E V  ++  F  Y P PVRR  I K NGK RPLGIP I DR+ Q
Sbjct  73   GVDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQ  132

Query  122  QCILQVLEPICEAKFHNHSYGFRPNRGTHHALARMKSLINLGGLHHCVDVDIKGFFDNVH  181
            QCILQV+EPICEAKF ++S GFRPNR+++ A+A+   LI++  L H VD+DIKGFFDN+ 
Sbjct  133  QCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNIS  192

Query  182  HGKLLKQMWTIGIRDKKLLSIISALIKAEI---TGEGV-PLKGTPQGGILSPLLSNIVLN  237
            H KL++Q+W++GIRDKKLL II  ++KA +    GE   P +GTPQGGILSPLL+NIVLN
Sbjct  193  HTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLN  252

Query  238  ELDWWVSNQWETFETEHKYADLAK----------YRAMKKTGLKEAFIVRYADDFKILCR  287
            ELDWW+++QWE   T  K+   ++          YRA++++ LKE   VRYADDFKI+C 
Sbjct  253  ELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCA  312

Query  288  TRNQAIRVRIAVEKFLKERLNLECSKEKSKVINLKKQWSEFLGFQLKAQRKGFDEVKLSK  347
            T+++A+R   A E  LK+RL LE S +KSKV+NLK+Q S+FLGF+               
Sbjct  313  THEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFK---------------  357

Query  348  RESRGYDKNTGKQIRKTVITGVKKIPKFVCISRMSHKAKTNARLKISDAVSRL----QKS  403
                              +   KK  K+V  S+MS+KA  +A+ K+S+ V +L    + +
Sbjct  358  ------------------LKVRKKGKKYVVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDN  399

Query  404  TTVKQVQRFNTTVMGIQNYYRAASLISLDLAEINFTCRMRIFNRLKNNMVPATMKDLTDS  463
            +   Q+Q++N+ V G+++YY  ++ +S D++ + F+   ++ NRLK ++  +   +L ++
Sbjct  400  AQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLAFSINKQLRNRLKGDL--SKKGQLRNG  457

Query  464  -QKERYKDYDCKLHALGGVALVPIHAQRNVPPMNFNQKVCGFTADGRDLIHNKLVSSAAH  522
              KE+Y     +++ L G ++VP+   ++  + +  + +  +T  GR+ IH++L   +A 
Sbjct  458  FIKEKYGA-SRQMRFLHGRPVVPLGYVQSKNAQHKRKSINKYTVKGREQIHKNLAIDTAT  516

Query  523  VLALGLTNIPDKSIEYHDNRISKFLAQYGKCYVTGRELGLHGWHCHHVVPFHISKDDRFS  582
            +L L    + +++IEY DNRIS + AQYGKC VTG  +  H+ HCHH VP   +  D ++
Sbjct  517  MLWLMRNPVKGRTIEYADNRISLYAAQYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYA  576

Query  583  NLVIVDGDIHSLIHMTDQTkidallkildldSKNLVSLNRLRRKAGREAI  632
            NL++V   +H LIH + +  I+  LK L+LD+K++  LN+LR  A   +I
Sbjct  577  NLILVSKAVHILIHASSEPTIEKYLKSLNLDNKQIEKLNKLRSMAEMPPI  626

83) BpOF4_20684 in NC_013792


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  372 bits (1400),  Expect = 2e-104, Method: Compositional matrix adjust.
 Identities = 270/623 (44%), Positives = 398/623 (64%), Gaps = 42/623 (6%)

Query  6    IRYKQYYEFGEIQKDLYTKSKTGESFKNLLEIILSEENIMLAYRNIKKNTGSKTKGTDGY  65
            IR  +YY+       LY+ SK + +F++L+EII SEENI LAYR IKKNTGS T G D  
Sbjct  18   IRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDKR  77

Query  66   TIIHLAEKNKESFIEEMRLRLENYKPQRVRRVLIDKNYGTDKRPLGIPTIADRIIQQMFL  125
            TI +LA  + E ++  +R ++ NY P  VRRV I K  G   RPLGIPTI DRI+QQ +L
Sbjct  78   TIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKT-RPLGIPTIVDRIVQQCIL  136

Query  126  QVLEPICEAKFYNHSYGFRPLRSTRHAIARVQTLININKLHYTVDIDIKGFFDNVNHNLL  185
            QV+EPICEAKF ++S GFRP RS+  AIA+   LI+++ L   VD+DIKGFFDN++H  L
Sbjct  137  QVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISHTKL  196

Query  186  IKQLWNIGVKDKRVLAIISKMLKAPI----QKEGIPKKGVPQGGILSPLLSNVVLNDLDQ  241
            I+Q+W +G++DK++L II  MLKAP+         P +G PQGGILSPLL+N+VLN+LD 
Sbjct  197  IRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLNELDW  256

Query  242  WVAGQWECFNTKHQY------SGNDVKIANLK--RASNLKEGYIVRYADDFRILARDHNT  293
            W+A+QWE   TK ++       G ++K    +  R S LKE   VRYADDF+I+   H+ 
Sbjct  257  WIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCATHED  316

Query  294  AWKWFHAVKGYLKDRLKLEISNEKSRVINLRKKSSDFLSYKIKAVPKRKKWVAKTNVTDK  353
            A + + A    LKDRL LEIS +KS+V+NL+++ SDFL++K+K   K KK V +++++DK
Sbjct  317  AVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHMSDK  376

Query  354  RIEQIQSKLRQSVRELKKHPTPENVVY-----YNSVVLGTQQYFKYATHVVKDFERIEFN  408
               + + K+ + V+ L   ++ +N  +     YNSVV G ++Y+  +T+V  DF R+ F+
Sbjct  377  AYKKAHEKVSEEVKKL-AYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLAFS  435

Query  409  LLKTLKTRLK-DVAK-----YGYIKVDKQCTYYRIYGNRRKKTFSIKKAGYLFPIAAVKT  462
            + K L+ RLK D++K      G+IK          YG  R+  F   ++  + P++ V++
Sbjct  436  INKQLRNRLKGDLSKKGQLRNGFIKEK--------YGASRQMRFLHGRP--VVPLGYVQS  485

Query  463  QSNLNFSQSLNPY------DTPKNFVWDKE-LVKLMRANIPNATIEYLDNRLSRYSMQQG  515
            ++  +  +S+N Y      +  KN+  D   ++ LMR  +   TIEY DNR+S Y+ Q G
Sbjct  486  KNAQHKRKSINKYTVKGREQIHKNLAIDTATMLWLMRNPVKGRTIEYADNRISLYAAQYG  545

Query  516  KCVISKMLLTADVTHCHHKVPKSLGGSDAFDNLVIVHVFVHRLIHATDNNTIQNYRKILN  575
            KC ++ + + ++  HCHHKVP S GGSD + NL++V   VH LIHA+ + TI++Y K LN
Sbjct  546  KCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLN  605

Query  576  LNTAQLRKLNQLRALCKLESIAI  598
            L+  Q+ KLN+LR++  + +I +
Sbjct  606  LDNKQIEKLNKLRSMAEMPPIIL  628

84) H175_285p101 in NC_020384


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  371 bits (1396),  Expect = 5e-104, Method: Compositional matrix adjust.
 Identities = 260/608 (43%), Positives = 407/608 (67%), Gaps = 24/608 (3%)

Query  1    MQSTLDDLYQQSQNGNNFYKLIELMKMDENIRLAYRNIKRNMGSLTAGTDGMTINDIKML  60
            M++T+D LY +S++++ F  L+E++  +ENI+LAYR IK+N GS T+G D  TI D+  L
Sbjct  26   MEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDKRTIADLAKL  85

Query  61   STDEVIEKVRTMFGWYEPQSVRRVFIPKPNGDRRPLGIPTIWDRLFQQCVLQILEPICEA  120
            S +E +  +R  F+ Y+P +VRRV IPKPNG  RPLGIPTI DR+ QQC+LQ++EPICEA
Sbjct  86   SEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQCILQVMEPICEA  145

Query  121  KFHNHSYGFRPNRSTHHALARMKSLVNRKGNGFHYCVDIDIKGFFDNVHHGKLLKQLWTI  180
            KF ++S GFRPNRS++ A+A+   L++ + + +H  VD+DIKGFFDN+ H KL++Q+W++
Sbjct  146  KFSENSNGFRPNRSAETAIAQCMRLIQVQ-HLYH-VVDLDIKGFFDNISHTKLIRQIWAL  203

Query  181  GIRDKKILSIISRLLKAEIV----NEGVPQKGTPQGGILSPLLSNIVLNELDWWVSNQWE  236
            GIRDKK+L II  +LKA +V    +   P +GTPQGGILSPLL+NIVLNELDWW+++QWE
Sbjct  204  GIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLNELDWWIASQWE  263

Query  237  TIKTSHPYKGNSE---------KYRALKKSKLKECFLIRYADDAKILCRDYVTALKMFEA  287
             + T   +K  S+          YRAL++S+LKE   +RYADD KI+C     A++ + A
Sbjct  264  EMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCATHEDAVRAYKA  323

Query  288  TKDFLRTRLHLDISLEKSKIINLRKKASHFLGFTVKANKKGNKHVAHSRMCVKSRKHAYS  347
            T   L+ RL L+IS +KSK++NL+++ S+FLGF +K  KKG+K V +S+M  K+ K A  
Sbjct  324  TELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHMSDKAYKKAHE  383

Query  348  KLKKAVKDI--SREQTPE--SVWRFNTTVMGIQNYYSAATHINHDLDHMSCHLIRTLYNR  403
            K+   VK +  S ++ ++   + ++N+ V G+++YY  +T+++HD+ +++  + + L NR
Sbjct  384  KVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLAFSINKQLRNR  443

Query  404  LRRDWKKATKSDM-STVLRKRYKRYNPKLYKIKDIVLLPIHAQKHKPARNFTQSISNYTK  462
            L+ D  K  K+++ +  ++ +Y       + + +  ++P+   + K A++  +SI++YT 
Sbjct  444  LKGDLSK--KGQLRNGFIKEKYGASRQMRF-LHGRPVVPLGYVQSKNAQHKRKSINKYTV  500

Query  463  EGREKIHDTLKAVDRETLRHVHRFYMKHRTVEYNDNRIAKFIAQYGKCAITKQEVGLVGW  522
             GRE+IH  L A+D  T+  + R  +K RT+EY DNRI+ + AQYGKCA+T   +   + 
Sbjct  501  KGREQIHKNL-AIDTATMLWLMRNPVKGRTIEYADNRISLYAAQYGKCAVTGIPMNSHDI  559

Query  523  HCHHKIPLEFGGQDNYENLVIVLEdihiaihsddsdKAKSILNKYDIIEDKKVMFDKLRI  582
            HCHHK+P+  GG D+Y NL++V   +HI IH+         L+  ++ + +   ++KLR 
Sbjct  560  HCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLNLDNKQIEKLNKLRS  619

Query  583  SARRHPIF  590
             A   PI+
Sbjct  620  MAEMPPII  627

85) BCAH820_B0013 in NC_011777


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  368 bits (1382),  Expect = 8e-103, Method: Compositional matrix adjust.
 Identities = 265/617 (43%), Positives = 408/617 (67%), Gaps = 32/617 (5%)

Query  7    RHKQYYDFTGIQNDLFQRSREGTKNFKNLLEIVISDENILLAYRQVKSNTGSKTPGTDDK  66
            R+ +YYD  G  + L+  S+ + K F++L+EI+ S+ENI LAYR +K NTGS T+G D +
Sbjct  19   RNSEYYDMEGTFDRLYAESKKD-KTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDKR  77

Query  67   TILDLANTNQDEFIHYMRELVLNYKPKSVRRVWIDKNYSKGKRPLGIPCIQDRIVQQMFL  126
            TI DLA+ +++E+++ +R    NY P +VRRV I K  +K  RPLGIP I DRIVQQ +L
Sbjct  78   TIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKT-RPLGIPTIVDRIVQQCIL  136

Query  127  NVLEPICEGKFYNHSYGFRPTRTTRHAVARVQTLVNINKYHYTVDIDIKGFFDNVNHSIL  186
            +V+EPICE+KF ++S GFRP R++  A+A+   L++++     VD+DIKGFFDN++H+ L
Sbjct  137  QVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISHTKL  196

Query  187  LKQVWNIGIRDKRVIAVISKMLKAPI---KGEGI-PTKGVPQGGILSPLLSNIVLNDLDQ  242
            ++Q+W +GIRDK+++ +I  MLKAP+   +GE   P++G PQGGILSPLL+NIVLN+LD 
Sbjct  197  IRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLNELDW  256

Query  243  WVADQWECFETRYQY---------SVNYSKYVNLRRNSKLKEGFLVRYADDFRIMTNTHD  293
            W+A QWE   T+ ++          ++   Y  LRR S+LKE   VRYADDF+I   TH+
Sbjct  257  WIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRR-SRLKEMHAVRYADDFKIFCATHE  315

Query  294  SAVKWFHAVVDFLNKRLKLEISPNKSKIINLRKKSSSFLGYKFKSTIKGNKRVFFSHIDD  353
             AV+ + A    L+ RL LEISP+KSK++NL+++ S FLG+K+K   KG+K V  SH+ D
Sbjct  316  DAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHMSD  375

Query  354  DKQKQIITKLKERI----YEIQKHPSAGNANLYNSVVLGVQNNFQYATHIVKDMSDIEYR  409
               K+   K+ E +    Y  + ++   + + YNSVV G+++ +  +T++  D S + + 
Sbjct  376  KAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLAFS  435

Query  410  VLRTLNNRLKKIAWYGKPNELPEKGAYLKF-YKNTRKTYRVAGVYLFPIGQVTTKNNLNY  468
            + + L NRLK     +K  +L  + +++K  Y  +R+   + G  + P+G V +KN  + 
Sbjct  436  INKQLRNRLKGD--LSKKGQL--RNGFIKEKYGASRQMRFLHGRPVVPLGYVQSKNAQHK  491

Query  469  SQSINPYTDEKVFDWDKELTE-------LMKSRLPNRSIEYMDNRLSKYSAQKGKCFITG  521
             +SIN YT     + +K+L+        LM++ +  R+IEY DNR+S Y+AQ GKC +TG
Sbjct  492  RKSINKYTVKGREQIHKNLAIDTATMLWLMRNPVKGRTIEYADNRISLYAAQYGKCAVTG  551

Query  522  LPLKARDVHCHHKKPTFLGGTDEFQNLIIVHKDIHTLIHASLEGTVLRYVNRFRLHTKQI  581
            +P++++D+HCHHK P   GG+DE+ NLI+V K +H LIHAS E T+ +Y++ + L+ KQI
Sbjct  552  IPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLNLDNKQI  611

Query  582  EKINQLRKLCKLERITI  598
            EK+N+LR +  +  I +
Sbjct  612  EKLNKLRSMAEMPPIIL  628

86) MC28_D026 in NC_018686


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  365 bits (1370),  Expect = 6e-102, Method: Compositional matrix adjust.
 Identities = 256/632 (41%), Positives = 417/632 (66%), Gaps = 30/632 (4%)

Query  1    MNVGKTPRRCPQLNARMRYWEYYNMQETFDKLYEDSRANKPFQGLYEMITAENNILLAYR  60
            +  G+  R+  Q   ++R  EYY+M+ TFD+LY +S+ +K F+ L E+I +E+NI LAYR
Sbjct  4    LTSGQQERKSKQ--RKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYR  61

Query  61   TIKSNKGSKTAGIDSFAIDQYKSMDKAEFLNLVRNRLNQYKPKAVKRVFIPKPNGDKRPL  120
            TIK N GS T+G+D  +I +   +   E++ L+R+++++Y P +V+RV IPKPNG  RPL
Sbjct  62   TIKKNTGSDTSGVDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPL  121

Query  121  GIPTMFDRLIQQMIKQILEPICEAKFYEHSYGFRPLRGARHAISRVMYLISRNTFHYAVE  180
            GIPT+ DR++QQ I Q++EPICEAKF E+S GFRP R+A  AI++ M LI  + +   V+
Sbjct  122  GIPTIVDRIVQQCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVD  181

Query  181  IDIKGFFDNVNHTLLLKQLWNMGIKDKRVLKLIYLILKAPI---KGVGI-PRKGTPQGGI  236
            +DIKGFFDN++HT L++Q+W +GI+DK++L +I  +LKAP+   +G    P +GTPQGGI
Sbjct  182  LDIKGFFDNISHTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGI  241

Query  237  LSPLLSNVVLNDLDQWIARQWHHFQSDYDYTEPGNRS---------RALKRTKLKQGYIV  287
            LSPLL+N+VLN+LD WIA QW++  +   +   +N           RAL+R++LK+   V
Sbjct  242  LSPLLANIVLNELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAV  301

Query  288  RYADDFKIMAKDFRTAQKWFMATKLYLKERLKLDISPGKSRIINLRKNKSEFLGYSLYVV  347
            RYADDFKI       A + + AT L LK+RL L+ISP+KS+++NL+++ S+FLG+ L V 
Sbjct  302  RYADDFKIFCATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVR  361

Query  348  PKRNKWVCnsnisekkkkqieseLRKRIKSIQRSTTRQ----NVQLYNAYVLGLRNYFRY  403
             K +K V  S++S+K  K+ +  +   +K +  S+  +    ++Q YN+ V GL++Y+  
Sbjct  362  KKGKKYVVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCI  421

Query  404  ATHVNIDMHELTFSVSLTFFNRLKSVGKYEVPINAPPVYKKFFKNNYRTFK----VCGIY  459
            +T+V+ D   L+FS++  + NRLK+    +++ ++  + + F+K++Y + +    + G  
Sbjct  422  STEVSHDFSRLAFSINKQLRNRLKG----DLSKKG-QLRNGFIKEKYGASRQMRFLHGRP  476

Query  460  LFPLADIQTATIWNYTQSQTPYSKKGRNSAEHKELDRNVLVEITRLLTVNTISRSLEYSD  519
            + PL+ +Q+    +  +S   Y+ KGR+   HK+L  +    + +L+     +R++EY+D
Sbjct  477  VVPLGYVQSKNAQHKRKSINKYTVKGREQI-HKNLAIDT-ATMLWLMRNPVKGRTIEYAD  534

Query  520  NRISRYSMVMGKCEILKEFLTASEVHCHHYVPLGLGGTDDYSNLRIIRKDIHRLIHATDN  579
            NRIS Y+   GKC +    + + ++HCHH VP++ GG+D+Y+NL ++ K +H LIHA+ +
Sbjct  535  NRISLYAAQYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSE  594

Query  580  RTIENYLKSLLLTDEQVKRINQYRRACNLEEI  611
             TIE+YLKSL L + Q+ ++N+ R   ++  I
Sbjct  595  PTIEKYLKSLNLDNKQIEKLNKLRSMAEMPPI  626

87) MC28_D126 in NC_018686


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  365 bits (1370),  Expect = 6e-102, Method: Compositional matrix adjust.
 Identities = 256/632 (41%), Positives = 417/632 (66%), Gaps = 30/632 (4%)

Query  1    MNVGKTPRRCPQLNARMRYWEYYNMQETFDKLYEDSRANKPFQGLYEMITAENNILLAYR  60
            +  G+  R+  Q   ++R  EYY+M+ TFD+LY +S+ +K F+ L E+I +E+NI LAYR
Sbjct  4    LTSGQQERKSKQ--RKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYR  61

Query  61   TIKSNKGSKTAGIDSFAIDQYKSMDKAEFLNLVRNRLNQYKPKAVKRVFIPKPNGDKRPL  120
            TIK N GS T+G+D  +I +   +   E++ L+R+++++Y P +V+RV IPKPNG  RPL
Sbjct  62   TIKKNTGSDTSGVDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPL  121

Query  121  GIPTMFDRLIQQMIKQILEPICEAKFYEHSYGFRPLRGARHAISRVMYLISRNTFHYAVE  180
            GIPT+ DR++QQ I Q++EPICEAKF E+S GFRP R+A  AI++ M LI  + +   V+
Sbjct  122  GIPTIVDRIVQQCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVD  181

Query  181  IDIKGFFDNVNHTLLLKQLWNMGIKDKRVLKLIYLILKAPI---KGVGI-PRKGTPQGGI  236
            +DIKGFFDN++HT L++Q+W +GI+DK++L +I  +LKAP+   +G    P +GTPQGGI
Sbjct  182  LDIKGFFDNISHTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGI  241

Query  237  LSPLLSNVVLNDLDQWIARQWHHFQSDYDYTEPGNRS---------RALKRTKLKQGYIV  287
            LSPLL+N+VLN+LD WIA QW++  +   +   +N           RAL+R++LK+   V
Sbjct  242  LSPLLANIVLNELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAV  301

Query  288  RYADDFKIMAKDFRTAQKWFMATKLYLKERLKLDISPGKSRIINLRKNKSEFLGYSLYVV  347
            RYADDFKI       A + + AT L LK+RL L+ISP+KS+++NL+++ S+FLG+ L V 
Sbjct  302  RYADDFKIFCATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVR  361

Query  348  PKRNKWVCnsnisekkkkqieseLRKRIKSIQRSTTRQ----NVQLYNAYVLGLRNYFRY  403
             K +K V  S++S+K  K+ +  +   +K +  S+  +    ++Q YN+ V GL++Y+  
Sbjct  362  KKGKKYVVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCI  421

Query  404  ATHVNIDMHELTFSVSLTFFNRLKSVGKYEVPINAPPVYKKFFKNNYRTFK----VCGIY  459
            +T+V+ D   L+FS++  + NRLK+    +++ ++  + + F+K++Y + +    + G  
Sbjct  422  STEVSHDFSRLAFSINKQLRNRLKG----DLSKKG-QLRNGFIKEKYGASRQMRFLHGRP  476

Query  460  LFPLADIQTATIWNYTQSQTPYSKKGRNSAEHKELDRNVLVEITRLLTVNTISRSLEYSD  519
            + PL+ +Q+    +  +S   Y+ KGR+   HK+L  +    + +L+     +R++EY+D
Sbjct  477  VVPLGYVQSKNAQHKRKSINKYTVKGREQI-HKNLAIDT-ATMLWLMRNPVKGRTIEYAD  534

Query  520  NRISRYSMVMGKCEILKEFLTASEVHCHHYVPLGLGGTDDYSNLRIIRKDIHRLIHATDN  579
            NRIS Y+   GKC +    + + ++HCHH VP++ GG+D+Y+NL ++ K +H LIHA+ +
Sbjct  535  NRISLYAAQYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSE  594

Query  580  RTIENYLKSLLLTDEQVKRINQYRRACNLEEI  611
             TIE+YLKSL L + Q+ ++N+ R   ++  I
Sbjct  595  PTIEKYLKSLNLDNKQIEKLNKLRSMAEMPPI  626

88) HBHAL_1226 in NC_017668


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  364 bits (1366),  Expect = 1e-101, Method: Compositional matrix adjust.
 Identities = 256/626 (41%), Positives = 397/626 (64%), Gaps = 19/626 (3%)

Query  1    MGTSLQRRDATVSTLRNWDYYNMTETFTDLHEKASQGNTFSHLYETIISRENILLAFRMI  60
            + ++ Q R +    +RN +YY+M  TF  L   + +++TF+HL E I S ENI LA+R I
Sbjct  4    LTSGQQERKSKQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTI  63

Query  61   KTNKGSRTPGTDGKTIDDMKELSENDLVNEVRSKLQNYHPKKVRREWIEKENGKWRPLGI  120
            K N GS T+G D +TI D+  LSE++ V  +R ++ NYHP  VRR  I K NGK RPLGI
Sbjct  64   KKNTGSDTSGVDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGI  123

Query  121  PCILDRVIQQCFKQVLEPIVESQFFKHSYGFRPLRSAHHAMARIQFLINHSQLHYVVDVD  180
            P I+DR++QQC+ QV+EPI E++F  +S GFRP RSA+ A+A+   LI+  +L  VVD+D
Sbjct  124  PTIVDRIVQQCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLD  183

Query  181  IKSFFDNVNHRLLKKQLWNIGIQDRKVLACISKMITSEI---DGEGV-PDKGSPQGGILS  236
            IK+FFDN++H  L +Q+W +GI+D+K+L  I  M+ + +   +GE   P +G+PQGGILS
Sbjct  184  IKGFFDNISHTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILS  243

Query  237  PLLSNVVLNDLDQWVADQWEVFPLTKSYssddarrrar---------KQTNLKQGYLVRY  287
            PLL+N+VLN+LD W+A QWE  P    + +    + +          +++ LK+   VRY
Sbjct  244  PLLANIVLNELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRY  303

Query  288  ADDFKILCRDGKTAQRWYHAVRLYLKERLKLDISPEKSQIVNLRKRESEFLGFTIRANKK  347
            ADDFKI+C     A R Y A  L LK+RL L+ISP+KS++VNL+++ S+FLGF ++  KK
Sbjct  304  ADDFKIFCATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKK  363

Query  348  GKKRVAHTGVVT----SKSEKIKQEAKKLIRRMKASPSTENINRYNSFVLGLHQYFKRAT  403
            GKK V ++ +         EK+ +E KKL      ++   ++++YNS V GLH+Y+  +T
Sbjct  364  GKKYVVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCIST  423

Query  404  HVSLVFSRLAYDLKPFLVNRLRPVGKLEHPFKPPPFYRKTFSLGTKTININDTYLFPIGN  463
            +VS  FSRLA+ ++  L NRL+        ++   F +  ++ + +   +++  + P+G 
Sbjct  424  EVSHDFSRLAFSINKQLRNRLKGDLSKKGQLR-NGFIKEKYGASRQMRFLHGRPVVPLGY  482

Query  464  VKTFHAMSFSSKLSLYTKKGREQIHKSLRPDIQKEIGHLMKSSLPKRSIEYLDNRISRYS  523
            V++ +A      ++ YT KGREQIHK+L  D    +  LM++++  R+IEY DNRIS Y+
Sbjct  483  VQSKNAQHKRKSINKYTVKGREQIHKNLAIDTATML-WLMRNPVKGRTIEYADNRISLYA  541

Query  524  MKMGRCEITGKYLHAQDVHCHHYVPKNQGGSDQFQNLRILHKDIHRLIHMKDIEKIKVYL  583
             + G+C +TG  ++++D+HCHH VP ++GGSD++ NL ++ K +H LIH      I  YL
Sbjct  542  AQYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYL  601

Query  584  ERLPQNRLILDKINQYRKVCGVEGIV  609
              L  +   ++K+N+ R +  +  I+
Sbjct  602  KSLNLDNKQIEKLNKLRSMAEMPPII  627

89) HBHAL_1667 in NC_017668


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  364 bits (1366),  Expect = 1e-101, Method: Compositional matrix adjust.
 Identities = 256/626 (41%), Positives = 397/626 (64%), Gaps = 19/626 (3%)

Query  1    MGTSLQRRDATVSTLRNWDYYNMTETFTDLHEKASQGNTFSHLYETIISRENILLAFRMI  60
            + ++ Q R +    +RN +YY+M  TF  L   + +++TF+HL E I S ENI LA+R I
Sbjct  4    LTSGQQERKSKQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTI  63

Query  61   KTNKGSRTPGTDGKTIDDMKELSENDLVNEVRSKLQNYHPKKVRREWIEKENGKWRPLGI  120
            K N GS T+G D +TI D+  LSE++ V  +R ++ NYHP  VRR  I K NGK RPLGI
Sbjct  64   KKNTGSDTSGVDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGI  123

Query  121  PCILDRVIQQCFKQVLEPIVESQFFKHSYGFRPLRSAHHAMARIQFLINHSQLHYVVDVD  180
            P I+DR++QQC+ QV+EPI E++F  +S GFRP RSA+ A+A+   LI+  +L  VVD+D
Sbjct  124  PTIVDRIVQQCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLD  183

Query  181  IKSFFDNVNHRLLKKQLWNIGIQDRKVLACISKMITSEI---DGEGV-PDKGSPQGGILS  236
            IK+FFDN++H  L +Q+W +GI+D+K+L  I  M+ + +   +GE   P +G+PQGGILS
Sbjct  184  IKGFFDNISHTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILS  243

Query  237  PLLSNVVLNDLDQWVADQWEVFPLTKSYssddarrrar---------KQTNLKQGYLVRY  287
            PLL+N+VLN+LD W+A QWE  P    + +    + +          +++ LK+   VRY
Sbjct  244  PLLANIVLNELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRY  303

Query  288  ADDFKILCRDGKTAQRWYHAVRLYLKERLKLDISPEKSQIVNLRKRESEFLGFTIRANKK  347
            ADDFKI+C     A R Y A  L LK+RL L+ISP+KS++VNL+++ S+FLGF ++  KK
Sbjct  304  ADDFKIFCATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKK  363

Query  348  GKKRVAHTGVVT----SKSEKIKQEAKKLIRRMKASPSTENINRYNSFVLGLHQYFKRAT  403
            GKK V ++ +         EK+ +E KKL      ++   ++++YNS V GLH+Y+  +T
Sbjct  364  GKKYVVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCIST  423

Query  404  HVSLVFSRLAYDLKPFLVNRLRPVGKLEHPFKPPPFYRKTFSLGTKTININDTYLFPIGN  463
            +VS  FSRLA+ ++  L NRL+        ++   F +  ++ + +   +++  + P+G 
Sbjct  424  EVSHDFSRLAFSINKQLRNRLKGDLSKKGQLR-NGFIKEKYGASRQMRFLHGRPVVPLGY  482

Query  464  VKTFHAMSFSSKLSLYTKKGREQIHKSLRPDIQKEIGHLMKSSLPKRSIEYLDNRISRYS  523
            V++ +A      ++ YT KGREQIHK+L  D    +  LM++++  R+IEY DNRIS Y+
Sbjct  483  VQSKNAQHKRKSINKYTVKGREQIHKNLAIDTATML-WLMRNPVKGRTIEYADNRISLYA  541

Query  524  MKMGRCEITGKYLHAQDVHCHHYVPKNQGGSDQFQNLRILHKDIHRLIHMKDIEKIKVYL  583
             + G+C +TG  ++++D+HCHH VP ++GGSD++ NL ++ K +H LIH      I  YL
Sbjct  542  AQYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYL  601

Query  584  ERLPQNRLILDKINQYRKVCGVEGIV  609
              L  +   ++K+N+ R +  +  I+
Sbjct  602  KSLNLDNKQIEKLNKLRSMAEMPPII  627

90) HBHAL_2489 in NC_017668


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  364 bits (1366),  Expect = 1e-101, Method: Compositional matrix adjust.
 Identities = 256/626 (41%), Positives = 397/626 (64%), Gaps = 19/626 (3%)

Query  1    MGTSLQRRDATVSTLRNWDYYNMTETFTDLHEKASQGNTFSHLYETIISRENILLAFRMI  60
            + ++ Q R +    +RN +YY+M  TF  L   + +++TF+HL E I S ENI LA+R I
Sbjct  4    LTSGQQERKSKQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTI  63

Query  61   KTNKGSRTPGTDGKTIDDMKELSENDLVNEVRSKLQNYHPKKVRREWIEKENGKWRPLGI  120
            K N GS T+G D +TI D+  LSE++ V  +R ++ NYHP  VRR  I K NGK RPLGI
Sbjct  64   KKNTGSDTSGVDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGI  123

Query  121  PCILDRVIQQCFKQVLEPIVESQFFKHSYGFRPLRSAHHAMARIQFLINHSQLHYVVDVD  180
            P I+DR++QQC+ QV+EPI E++F  +S GFRP RSA+ A+A+   LI+  +L  VVD+D
Sbjct  124  PTIVDRIVQQCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLD  183

Query  181  IKSFFDNVNHRLLKKQLWNIGIQDRKVLACISKMITSEI---DGEGV-PDKGSPQGGILS  236
            IK+FFDN++H  L +Q+W +GI+D+K+L  I  M+ + +   +GE   P +G+PQGGILS
Sbjct  184  IKGFFDNISHTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILS  243

Query  237  PLLSNVVLNDLDQWVADQWEVFPLTKSYssddarrrar---------KQTNLKQGYLVRY  287
            PLL+N+VLN+LD W+A QWE  P    + +    + +          +++ LK+   VRY
Sbjct  244  PLLANIVLNELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRY  303

Query  288  ADDFKILCRDGKTAQRWYHAVRLYLKERLKLDISPEKSQIVNLRKRESEFLGFTIRANKK  347
            ADDFKI+C     A R Y A  L LK+RL L+ISP+KS++VNL+++ S+FLGF ++  KK
Sbjct  304  ADDFKIFCATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKK  363

Query  348  GKKRVAHTGVVT----SKSEKIKQEAKKLIRRMKASPSTENINRYNSFVLGLHQYFKRAT  403
            GKK V ++ +         EK+ +E KKL      ++   ++++YNS V GLH+Y+  +T
Sbjct  364  GKKYVVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCIST  423

Query  404  HVSLVFSRLAYDLKPFLVNRLRPVGKLEHPFKPPPFYRKTFSLGTKTININDTYLFPIGN  463
            +VS  FSRLA+ ++  L NRL+        ++   F +  ++ + +   +++  + P+G 
Sbjct  424  EVSHDFSRLAFSINKQLRNRLKGDLSKKGQLR-NGFIKEKYGASRQMRFLHGRPVVPLGY  482

Query  464  VKTFHAMSFSSKLSLYTKKGREQIHKSLRPDIQKEIGHLMKSSLPKRSIEYLDNRISRYS  523
            V++ +A      ++ YT KGREQIHK+L  D    +  LM++++  R+IEY DNRIS Y+
Sbjct  483  VQSKNAQHKRKSINKYTVKGREQIHKNLAIDTATML-WLMRNPVKGRTIEYADNRISLYA  541

Query  524  MKMGRCEITGKYLHAQDVHCHHYVPKNQGGSDQFQNLRILHKDIHRLIHMKDIEKIKVYL  583
             + G+C +TG  ++++D+HCHH VP ++GGSD++ NL ++ K +H LIH      I  YL
Sbjct  542  AQYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYL  601

Query  584  ERLPQNRLILDKINQYRKVCGVEGIV  609
              L  +   ++K+N+ R +  +  I+
Sbjct  602  KSLNLDNKQIEKLNKLRSMAEMPPII  627

91) HBHAL_2493 in NC_017668


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  364 bits (1366),  Expect = 1e-101, Method: Compositional matrix adjust.
 Identities = 256/626 (41%), Positives = 397/626 (64%), Gaps = 19/626 (3%)

Query  1    MGTSLQRRDATVSTLRNWDYYNMTETFTDLHEKASQGNTFSHLYETIISRENILLAFRMI  60
            + ++ Q R +    +RN +YY+M  TF  L   + +++TF+HL E I S ENI LA+R I
Sbjct  4    LTSGQQERKSKQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTI  63

Query  61   KTNKGSRTPGTDGKTIDDMKELSENDLVNEVRSKLQNYHPKKVRREWIEKENGKWRPLGI  120
            K N GS T+G D +TI D+  LSE++ V  +R ++ NYHP  VRR  I K NGK RPLGI
Sbjct  64   KKNTGSDTSGVDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGI  123

Query  121  PCILDRVIQQCFKQVLEPIVESQFFKHSYGFRPLRSAHHAMARIQFLINHSQLHYVVDVD  180
            P I+DR++QQC+ QV+EPI E++F  +S GFRP RSA+ A+A+   LI+  +L  VVD+D
Sbjct  124  PTIVDRIVQQCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLD  183

Query  181  IKSFFDNVNHRLLKKQLWNIGIQDRKVLACISKMITSEI---DGEGV-PDKGSPQGGILS  236
            IK+FFDN++H  L +Q+W +GI+D+K+L  I  M+ + +   +GE   P +G+PQGGILS
Sbjct  184  IKGFFDNISHTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILS  243

Query  237  PLLSNVVLNDLDQWVADQWEVFPLTKSYssddarrrar---------KQTNLKQGYLVRY  287
            PLL+N+VLN+LD W+A QWE  P    + +    + +          +++ LK+   VRY
Sbjct  244  PLLANIVLNELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRY  303

Query  288  ADDFKILCRDGKTAQRWYHAVRLYLKERLKLDISPEKSQIVNLRKRESEFLGFTIRANKK  347
            ADDFKI+C     A R Y A  L LK+RL L+ISP+KS++VNL+++ S+FLGF ++  KK
Sbjct  304  ADDFKIFCATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKK  363

Query  348  GKKRVAHTGVVT----SKSEKIKQEAKKLIRRMKASPSTENINRYNSFVLGLHQYFKRAT  403
            GKK V ++ +         EK+ +E KKL      ++   ++++YNS V GLH+Y+  +T
Sbjct  364  GKKYVVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCIST  423

Query  404  HVSLVFSRLAYDLKPFLVNRLRPVGKLEHPFKPPPFYRKTFSLGTKTININDTYLFPIGN  463
            +VS  FSRLA+ ++  L NRL+        ++   F +  ++ + +   +++  + P+G 
Sbjct  424  EVSHDFSRLAFSINKQLRNRLKGDLSKKGQLR-NGFIKEKYGASRQMRFLHGRPVVPLGY  482

Query  464  VKTFHAMSFSSKLSLYTKKGREQIHKSLRPDIQKEIGHLMKSSLPKRSIEYLDNRISRYS  523
            V++ +A      ++ YT KGREQIHK+L  D    +  LM++++  R+IEY DNRIS Y+
Sbjct  483  VQSKNAQHKRKSINKYTVKGREQIHKNLAIDTATML-WLMRNPVKGRTIEYADNRISLYA  541

Query  524  MKMGRCEITGKYLHAQDVHCHHYVPKNQGGSDQFQNLRILHKDIHRLIHMKDIEKIKVYL  583
             + G+C +TG  ++++D+HCHH VP ++GGSD++ NL ++ K +H LIH      I  YL
Sbjct  542  AQYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYL  601

Query  584  ERLPQNRLILDKINQYRKVCGVEGIV  609
              L  +   ++K+N+ R +  +  I+
Sbjct  602  KSLNLDNKQIEKLNKLRSMAEMPPII  627

92) HBHAL_2515 in NC_017668


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  364 bits (1366),  Expect = 1e-101, Method: Compositional matrix adjust.
 Identities = 256/626 (41%), Positives = 397/626 (64%), Gaps = 19/626 (3%)

Query  1    MGTSLQRRDATVSTLRNWDYYNMTETFTDLHEKASQGNTFSHLYETIISRENILLAFRMI  60
            + ++ Q R +    +RN +YY+M  TF  L   + +++TF+HL E I S ENI LA+R I
Sbjct  4    LTSGQQERKSKQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTI  63

Query  61   KTNKGSRTPGTDGKTIDDMKELSENDLVNEVRSKLQNYHPKKVRREWIEKENGKWRPLGI  120
            K N GS T+G D +TI D+  LSE++ V  +R ++ NYHP  VRR  I K NGK RPLGI
Sbjct  64   KKNTGSDTSGVDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGI  123

Query  121  PCILDRVIQQCFKQVLEPIVESQFFKHSYGFRPLRSAHHAMARIQFLINHSQLHYVVDVD  180
            P I+DR++QQC+ QV+EPI E++F  +S GFRP RSA+ A+A+   LI+  +L  VVD+D
Sbjct  124  PTIVDRIVQQCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLD  183

Query  181  IKSFFDNVNHRLLKKQLWNIGIQDRKVLACISKMITSEI---DGEGV-PDKGSPQGGILS  236
            IK+FFDN++H  L +Q+W +GI+D+K+L  I  M+ + +   +GE   P +G+PQGGILS
Sbjct  184  IKGFFDNISHTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILS  243

Query  237  PLLSNVVLNDLDQWVADQWEVFPLTKSYssddarrrar---------KQTNLKQGYLVRY  287
            PLL+N+VLN+LD W+A QWE  P    + +    + +          +++ LK+   VRY
Sbjct  244  PLLANIVLNELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRY  303

Query  288  ADDFKILCRDGKTAQRWYHAVRLYLKERLKLDISPEKSQIVNLRKRESEFLGFTIRANKK  347
            ADDFKI+C     A R Y A  L LK+RL L+ISP+KS++VNL+++ S+FLGF ++  KK
Sbjct  304  ADDFKIFCATHEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKK  363

Query  348  GKKRVAHTGVVT----SKSEKIKQEAKKLIRRMKASPSTENINRYNSFVLGLHQYFKRAT  403
            GKK V ++ +         EK+ +E KKL      ++   ++++YNS V GLH+Y+  +T
Sbjct  364  GKKYVVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCIST  423

Query  404  HVSLVFSRLAYDLKPFLVNRLRPVGKLEHPFKPPPFYRKTFSLGTKTININDTYLFPIGN  463
            +VS  FSRLA+ ++  L NRL+        ++   F +  ++ + +   +++  + P+G 
Sbjct  424  EVSHDFSRLAFSINKQLRNRLKGDLSKKGQLR-NGFIKEKYGASRQMRFLHGRPVVPLGY  482

Query  464  VKTFHAMSFSSKLSLYTKKGREQIHKSLRPDIQKEIGHLMKSSLPKRSIEYLDNRISRYS  523
            V++ +A      ++ YT KGREQIHK+L  D    +  LM++++  R+IEY DNRIS Y+
Sbjct  483  VQSKNAQHKRKSINKYTVKGREQIHKNLAIDTATML-WLMRNPVKGRTIEYADNRISLYA  541

Query  524  MKMGRCEITGKYLHAQDVHCHHYVPKNQGGSDQFQNLRILHKDIHRLIHMKDIEKIKVYL  583
             + G+C +TG  ++++D+HCHH VP ++GGSD++ NL ++ K +H LIH      I  YL
Sbjct  542  AQYGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYL  601

Query  584  ERLPQNRLILDKINQYRKVCGVEGIV  609
              L  +   ++K+N+ R +  +  I+
Sbjct  602  KSLNLDNKQIEKLNKLRSMAEMPPII  627

93) BCQ_PI121 in NC_011973


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  353 bits (1327),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 265/617 (43%), Positives = 408/617 (67%), Gaps = 32/617 (5%)

Query  7    RHKQYYDFTGIQNDLFQRSREGTKNFKNLLEIVISDENILLAYRQVKSNTGSKTPGIDDK  66
            R+ +YYD  G  + L+  S+ + K F++L+EI+ S+ENI LAYR +K NTGS T+G+D +
Sbjct  19   RNSEYYDMEGTFDRLYAESKKD-KTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDKR  77

Query  67   TILDLANTNQDEFIHYMREIVLNYKPKSVRRVWIDKNYSKGKRPLGIPCIQDRIVQQMFL  126
            TI DLA+ +++E+++ +R    NY P +VRRV I K  +K  RPLGIP I DRIVQQ +L
Sbjct  78   TIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKT-RPLGIPTIVDRIVQQCIL  136

Query  127  NVLEPICEGKFYNHSYGFRPTRTTRHAVARVQTLVNINKYHYTVDIDIKGFFDNVNHSIL  186
            +V+EPICE+KF ++S GFRP R++  A+A+   L++++     VD+DIKGFFDN++H+ L
Sbjct  137  QVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISHTKL  196

Query  187  LKQVWNIGIRDKRVIAVISKMLKAPI---KGEGI-PTKGVPQGGILSPLLSNIVLNDLDQ  242
            ++Q+W +GIRDK+++ +I  MLKAP+   +GE   P++G PQGGILSPLL+NIVLN+LD 
Sbjct  197  IRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLNELDW  256

Query  243  WVADQWECFETRYQY---------SVNYSKYVNLRRNSKLKEGFLVRYADDFRIMTNTHD  293
            W+A QWE   T+ ++          ++   Y  LRR S+LKE   VRYADDF+I   TH+
Sbjct  257  WIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRR-SRLKEMHAVRYADDFKIFCATHE  315

Query  294  SAVKWFHAVVDFLNKRLKLEISPNKSKIINLRkksssflgskfksTIKGNKRVFFSHIDD  353
             AV+ + A    L+ RL LEISP+KSK++NL+++ S FLG K+K   KG+K V  SH+ D
Sbjct  316  DAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHMSD  375

Query  354  DKQKQIITKLKERI----YEIQKHPSAGNANLYNSVVLGVQNNFQYATHIVKDMSDIEYR  409
               K+   K+ E +    Y  + ++   + + YNSVV G+++ +  +T++  D S + + 
Sbjct  376  KAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLAFS  435

Query  410  VLRTLNNRLKKIAWYGKPNELPEKGAYLKF-YKNTRKTYRIAGVYLFPIGQVTTKNNLNY  468
            + + L NRLK     +K  +L  + +++K  Y  +R+   + G  + P+G V +KN  + 
Sbjct  436  INKQLRNRLKGD--LSKKGQL--RNGFIKEKYGASRQMRFLHGRPVVPLGYVQSKNAQHK  491

Query  469  SQSINPYTDEKVFDWDKELTE-------LMKSRLPNRSIEYMDNRLSKYSAQKGKCFITG  521
             +SIN YT     + +K+L+        LM++ +  R+IEY DNR+S Y+AQ GKC +TG
Sbjct  492  RKSINKYTVKGREQIHKNLAIDTATMLWLMRNPVKGRTIEYADNRISLYAAQYGKCAVTG  551

Query  522  LPLKARDVHCHHKKPTFLGGTDEFQNLIIVHKDIHTLIHASLEGTVLRYVNRFRLHTKQI  581
            +P++++D+HCHHK P   GG+DE+ NLI+V K +H LIHAS E T+ +Y++ + L+ KQI
Sbjct  552  IPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLNLDNKQI  611

Query  582  EKINQLRKLCKLERITI  598
            EK+N+LR +  +  I +
Sbjct  612  EKLNKLRSMAEMPPIIL  628

94) CT43_P281094 in NC_017203


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  353 bits (1327),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 261/608 (43%), Positives = 407/608 (67%), Gaps = 24/608 (3%)

Query  1    MQSTLDDLYQQSQNGNNFYKLIELMKMDENIRLAYRNIKRNMGSLTAGTDGMTINDIKML  60
            M++T+D LY +S++++ F  L+E++  +ENI+LAYR IK+N GS T+G D  TI D+  L
Sbjct  26   MEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDKRTIADLAKL  85

Query  61   STDEVIEKVRTMFGWYEPQSVRRVFIPKPNGDRRPLGIPTIWDRLFQQCVLQILEPICEA  120
            S +E +  +R  F+ Y+P +VRRV IPKPNG  RPLGIPTI DR+ QQC+LQ++EPICEA
Sbjct  86   SEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQCILQVMEPICEA  145

Query  121  KFHNHSYGFRPNRSTHHALARMKSLVNRKGNGFHYCVDIDIKGFFDNVHHGKLLKQLWTI  180
            KF ++S GFRPNRS++ A+A+   L++ + + +H  VD+DIKGFFDN+ H KL++Q+W++
Sbjct  146  KFSENSNGFRPNRSAETAIAQCMRLIQVQ-HLYH-VVDLDIKGFFDNISHTKLIRQIWAL  203

Query  181  GIRDkkllsiisrllkAEIV----NEGVPQKGTPQGGILSPLLSNIVLNELDWWVSNQWE  236
            GIRDKKLL II  +LKA +V    +   P +GTPQGGILSPLL+NIVLNELDWW+++QWE
Sbjct  204  GIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLNELDWWIASQWE  263

Query  237  TIKTSHPYKGNSE---------KYRALKKSKLKECFLIRYADDAKILCRDYVTALKMFEA  287
             + T   +K  S+          YRAL++S+LKE   +RYADD KI+C     A++ + A
Sbjct  264  EMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCATHEDAVRAYKA  323

Query  288  TKDFLRTRLHLDISLEKSKIINLRKKASHFLGFTVKANKKGNKHVAHSRMCVKSRKHAYS  347
            T   L+ RL L+IS +KSK++NL+++ S+FLGF +K  KKG+K V +S+M  K+ K A  
Sbjct  324  TELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHMSDKAYKKAHE  383

Query  348  KLKKAVKDI--SREQTPE--SVWRFNTTVMGIQNYYSAATHINHDLDHMSCHLIRTLYNR  403
            K+   VK +  S ++ ++   + ++N+ V G+++YY  +T+++HD+ +++  + + L NR
Sbjct  384  KVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLAFSINKQLRNR  443

Query  404  LRRDWKKATKSDM-STVLRKRYKRYNPKLYKIKDIVLLPIHAQKHKPARNFTQSISNYTK  462
            L+ D  K  K+++ +  ++ +Y       + + +  ++P+   + K A++  +SI++YT 
Sbjct  444  LKGDLSK--KGQLRNGFIKEKYGASRQMRF-LHGRPVVPLGYVQSKNAQHKRKSINKYTV  500

Query  463  EGREKIHDTLKAVDRETLRHVHRFYMKHRTVEYNDNRIAKFIAQYGKCAITKQEVGLVGW  522
             GRE+IH  L A+D  T+  + R  +K RT+EY DNRI+ + AQYGKCA+T   +   + 
Sbjct  501  KGREQIHKNL-AIDTATMLWLMRNPVKGRTIEYADNRISLYAAQYGKCAVTGIPMNSHDI  559

Query  523  HCHHKIPLEFGGQDNYENLVIVLEdihiaihsddsdKAKSILNKYDIIEDKKVMFDKLRI  582
            HCHHK+P+  GG D+Y NL++V   +HI IH+         L+  ++ + +   ++KLR 
Sbjct  560  HCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLNLDNKQIEKLNKLRS  619

Query  583  SARRHPIF  590
             A   PI+
Sbjct  620  MAEMPPII  627

95) CT43_CH0563 in NC_017208


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  353 bits (1327),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 261/608 (43%), Positives = 407/608 (67%), Gaps = 24/608 (3%)

Query  1    MQSTLDDLYQQSQNGNNFYKLIELMKMDENIRLAYRNIKRNMGSLTAGTDGMTINDIKML  60
            M++T+D LY +S++++ F  L+E++  +ENI+LAYR IK+N GS T+G D  TI D+  L
Sbjct  26   MEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDKRTIADLAKL  85

Query  61   STDEVIEKVRTMFGWYEPQSVRRVFIPKPNGDRRPLGIPTIWDRLFQQCVLQILEPICEA  120
            S +E +  +R  F+ Y+P +VRRV IPKPNG  RPLGIPTI DR+ QQC+LQ++EPICEA
Sbjct  86   SEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQCILQVMEPICEA  145

Query  121  KFHNHSYGFRPNRSTHHALARMKSLVNRKGNGFHYCVDIDIKGFFDNVHHGKLLKQLWTI  180
            KF ++S GFRPNRS++ A+A+   L++ + + +H  VD+DIKGFFDN+ H KL++Q+W++
Sbjct  146  KFSENSNGFRPNRSAETAIAQCMRLIQVQ-HLYH-VVDLDIKGFFDNISHTKLIRQIWAL  203

Query  181  GIRDkkllsiisrllkAEIV----NEGVPQKGTPQGGILSPLLSNIVLNELDWWVSNQWE  236
            GIRDKKLL II  +LKA +V    +   P +GTPQGGILSPLL+NIVLNELDWW+++QWE
Sbjct  204  GIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLNELDWWIASQWE  263

Query  237  TIKTSHPYKGNSE---------KYRALKKSKLKECFLIRYADDAKILCRDYVTALKMFEA  287
             + T   +K  S+          YRAL++S+LKE   +RYADD KI+C     A++ + A
Sbjct  264  EMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCATHEDAVRAYKA  323

Query  288  TKDFLRTRLHLDISLEKSKIINLRKKASHFLGFTVKANKKGNKHVAHSRMCVKSRKHAYS  347
            T   L+ RL L+IS +KSK++NL+++ S+FLGF +K  KKG+K V +S+M  K+ K A  
Sbjct  324  TELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHMSDKAYKKAHE  383

Query  348  KLKKAVKDI--SREQTPE--SVWRFNTTVMGIQNYYSAATHINHDLDHMSCHLIRTLYNR  403
            K+   VK +  S ++ ++   + ++N+ V G+++YY  +T+++HD+ +++  + + L NR
Sbjct  384  KVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLAFSINKQLRNR  443

Query  404  LRRDWKKATKSDM-STVLRKRYKRYNPKLYKIKDIVLLPIHAQKHKPARNFTQSISNYTK  462
            L+ D  K  K+++ +  ++ +Y       + + +  ++P+   + K A++  +SI++YT 
Sbjct  444  LKGDLSK--KGQLRNGFIKEKYGASRQMRF-LHGRPVVPLGYVQSKNAQHKRKSINKYTV  500

Query  463  EGREKIHDTLKAVDRETLRHVHRFYMKHRTVEYNDNRIAKFIAQYGKCAITKQEVGLVGW  522
             GRE+IH  L A+D  T+  + R  +K RT+EY DNRI+ + AQYGKCA+T   +   + 
Sbjct  501  KGREQIHKNL-AIDTATMLWLMRNPVKGRTIEYADNRISLYAAQYGKCAVTGIPMNSHDI  559

Query  523  HCHHKIPLEFGGQDNYENLVIVLEdihiaihsddsdKAKSILNKYDIIEDKKVMFDKLRI  582
            HCHHK+P+  GG D+Y NL++V   +HI IH+         L+  ++ + +   ++KLR 
Sbjct  560  HCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLNLDNKQIEKLNKLRS  619

Query  583  SARRHPIF  590
             A   PI+
Sbjct  620  MAEMPPII  627

96) H175_ch1542 in NC_020376


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  353 bits (1327),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 261/608 (43%), Positives = 407/608 (67%), Gaps = 24/608 (3%)

Query  1    MQSTLDDLYQQSQNGNNFYKLIELMKMDENIRLAYRNIKRNMGSLTAGTDGMTINDIKML  60
            M++T+D LY +S++++ F  L+E++  +ENI+LAYR IK+N GS T+G D  TI D+  L
Sbjct  26   MEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDKRTIADLAKL  85

Query  61   STDEVIEKVRTMFGWYEPQSVRRVFIPKPNGDRRPLGIPTIWDRLFQQCVLQILEPICEA  120
            S +E +  +R  F+ Y+P +VRRV IPKPNG  RPLGIPTI DR+ QQC+LQ++EPICEA
Sbjct  86   SEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQCILQVMEPICEA  145

Query  121  KFHNHSYGFRPNRSTHHALARMKSLVNRKGNGFHYCVDIDIKGFFDNVHHGKLLKQLWTI  180
            KF ++S GFRPNRS++ A+A+   L++ + + +H  VD+DIKGFFDN+ H KL++Q+W++
Sbjct  146  KFSENSNGFRPNRSAETAIAQCMRLIQVQ-HLYH-VVDLDIKGFFDNISHTKLIRQIWAL  203

Query  181  GIRDkkllsiisrllkAEIV----NEGVPQKGTPQGGILSPLLSNIVLNELDWWVSNQWE  236
            GIRDKKLL II  +LKA +V    +   P +GTPQGGILSPLL+NIVLNELDWW+++QWE
Sbjct  204  GIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLNELDWWIASQWE  263

Query  237  TIKTSHPYKGNSE---------KYRALKKSKLKECFLIRYADDAKILCRDYVTALKMFEA  287
             + T   +K  S+          YRAL++S+LKE   +RYADD KI+C     A++ + A
Sbjct  264  EMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCATHEDAVRAYKA  323

Query  288  TKDFLRTRLHLDISLEKSKIINLRKKASHFLGFTVKANKKGNKHVAHSRMCVKSRKHAYS  347
            T   L+ RL L+IS +KSK++NL+++ S+FLGF +K  KKG+K V +S+M  K+ K A  
Sbjct  324  TELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHMSDKAYKKAHE  383

Query  348  KLKKAVKDI--SREQTPE--SVWRFNTTVMGIQNYYSAATHINHDLDHMSCHLIRTLYNR  403
            K+   VK +  S ++ ++   + ++N+ V G+++YY  +T+++HD+ +++  + + L NR
Sbjct  384  KVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLAFSINKQLRNR  443

Query  404  LRRDWKKATKSDM-STVLRKRYKRYNPKLYKIKDIVLLPIHAQKHKPARNFTQSISNYTK  462
            L+ D  K  K+++ +  ++ +Y       + + +  ++P+   + K A++  +SI++YT 
Sbjct  444  LKGDLSK--KGQLRNGFIKEKYGASRQMRF-LHGRPVVPLGYVQSKNAQHKRKSINKYTV  500

Query  463  EGREKIHDTLKAVDRETLRHVHRFYMKHRTVEYNDNRIAKFIAQYGKCAITKQEVGLVGW  522
             GRE+IH  L A+D  T+  + R  +K RT+EY DNRI+ + AQYGKCA+T   +   + 
Sbjct  501  KGREQIHKNL-AIDTATMLWLMRNPVKGRTIEYADNRISLYAAQYGKCAVTGIPMNSHDI  559

Query  523  HCHHKIPLEFGGQDNYENLVIVLEdihiaihsddsdKAKSILNKYDIIEDKKVMFDKLRI  582
            HCHHK+P+  GG D+Y NL++V   +HI IH+         L+  ++ + +   ++KLR 
Sbjct  560  HCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLNLDNKQIEKLNKLRS  619

Query  583  SARRHPIF  590
             A   PI+
Sbjct  620  MAEMPPII  627

97) H175_233p111 in NC_020394


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  353 bits (1327),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 261/608 (43%), Positives = 407/608 (67%), Gaps = 24/608 (3%)

Query  1    MQSTLDDLYQQSQNGNNFYKLIELMKMDENIRLAYRNIKRNMGSLTAGTDGMTINDIKML  60
            M++T+D LY +S++++ F  L+E++  +ENI+LAYR IK+N GS T+G D  TI D+  L
Sbjct  26   MEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDKRTIADLAKL  85

Query  61   STDEVIEKVRTMFGWYEPQSVRRVFIPKPNGDRRPLGIPTIWDRLFQQCVLQILEPICEA  120
            S +E +  +R  F+ Y+P +VRRV IPKPNG  RPLGIPTI DR+ QQC+LQ++EPICEA
Sbjct  86   SEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQCILQVMEPICEA  145

Query  121  KFHNHSYGFRPNRSTHHALARMKSLVNRKGNGFHYCVDIDIKGFFDNVHHGKLLKQLWTI  180
            KF ++S GFRPNRS++ A+A+   L++ + + +H  VD+DIKGFFDN+ H KL++Q+W++
Sbjct  146  KFSENSNGFRPNRSAETAIAQCMRLIQVQ-HLYH-VVDLDIKGFFDNISHTKLIRQIWAL  203

Query  181  GIRDkkllsiisrllkAEIV----NEGVPQKGTPQGGILSPLLSNIVLNELDWWVSNQWE  236
            GIRDKKLL II  +LKA +V    +   P +GTPQGGILSPLL+NIVLNELDWW+++QWE
Sbjct  204  GIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLNELDWWIASQWE  263

Query  237  TIKTSHPYKGNSE---------KYRALKKSKLKECFLIRYADDAKILCRDYVTALKMFEA  287
             + T   +K  S+          YRAL++S+LKE   +RYADD KI+C     A++ + A
Sbjct  264  EMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCATHEDAVRAYKA  323

Query  288  TKDFLRTRLHLDISLEKSKIINLRKKASHFLGFTVKANKKGNKHVAHSRMCVKSRKHAYS  347
            T   L+ RL L+IS +KSK++NL+++ S+FLGF +K  KKG+K V +S+M  K+ K A  
Sbjct  324  TELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHMSDKAYKKAHE  383

Query  348  KLKKAVKDI--SREQTPE--SVWRFNTTVMGIQNYYSAATHINHDLDHMSCHLIRTLYNR  403
            K+   VK +  S ++ ++   + ++N+ V G+++YY  +T+++HD+ +++  + + L NR
Sbjct  384  KVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLAFSINKQLRNR  443

Query  404  LRRDWKKATKSDM-STVLRKRYKRYNPKLYKIKDIVLLPIHAQKHKPARNFTQSISNYTK  462
            L+ D  K  K+++ +  ++ +Y       + + +  ++P+   + K A++  +SI++YT 
Sbjct  444  LKGDLSK--KGQLRNGFIKEKYGASRQMRF-LHGRPVVPLGYVQSKNAQHKRKSINKYTV  500

Query  463  EGREKIHDTLKAVDRETLRHVHRFYMKHRTVEYNDNRIAKFIAQYGKCAITKQEVGLVGW  522
             GRE+IH  L A+D  T+  + R  +K RT+EY DNRI+ + AQYGKCA+T   +   + 
Sbjct  501  KGREQIHKNL-AIDTATMLWLMRNPVKGRTIEYADNRISLYAAQYGKCAVTGIPMNSHDI  559

Query  523  HCHHKIPLEFGGQDNYENLVIVLEdihiaihsddsdKAKSILNKYDIIEDKKVMFDKLRI  582
            HCHHK+P+  GG D+Y NL++V   +HI IH+         L+  ++ + +   ++KLR 
Sbjct  560  HCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLNLDNKQIEKLNKLRS  619

Query  583  SARRHPIF  590
             A   PI+
Sbjct  620  MAEMPPII  627

98) CT43_P281112 in NC_017203


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  353 bits (1327),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 250/612 (41%), Positives = 395/612 (65%), Gaps = 25/612 (4%)

Query  7    QPQYYNFQGELDGLYVKSKNGGNFKDLYSFIIDERNIKLAFGTIKSNQGSKTPGTDQITI  66
            +++YY+ +G +D LY  SK++  F++L  +I  E NIKLA+ TIK N GS T+G D+ TI
Sbjct  20   NSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDKRTI  79

Query  67   NEYKGFSDDEIIHLVREKLINFKPDSVRRVFIPKADGKSRPLGIPTMLDRIIQQCFKQIL  126
             +   +S++E ++L+R ++ N+ P++VRRV IPK++GK+RPLGIPT++DRI+QQC+ Q++
Sbjct  80   ADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQCILQVM  139

Query  127  EPIVEAKFYEHSYGFRPLRSTHHAIARTNFLININKLHYCVDIDIKGFFDNINHNKLIKQ  186
            EPI EAKF E+S GFRP RS++ AIA+   LI+++ L   VD+DIKGFFDNI+H KLI+Q
Sbjct  140  EPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISHTKLIRQ  199

Query  187  LWNIGVRDKQVLAIIKKMLKCEIV---GEGK-AEKGTPQGGILSPLLANVVLNDLDHWVA  242
            +W +G+RDK++L IIK MLK  +V   GE   + +GTPQGGILSPLLAN+VLN+LD W+A
Sbjct  200  IWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLNELDWWIA  259

Query  243  SQWHNFPTNTHY---------EDNRPRYRVQKKTKLKQGFIVRYADDFKIFTNSYNSAKR  293
            SQW++ PT+T +         E +   YR  ++++LK+   VRYADDFKIF  + + A R
Sbjct  260  SQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCATHEDAVR  319

Query  294  WFHAVKNYIEKNLKLEISESKSKITNLRKRKSLFLGIEfkavakkkkfvaQSYIPKDSMK  353
             + A    +   L LEIS  KSK+ NL+++ S FLG+ +K   K KK+V +S ++  + K
Sbjct  320  AYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHMSDKAYK  379

Query  354  SIQANIKKKVKSIRINT-IPVKVSELNAY---IRGVHDYFKVATQVNKGFHKITYHSNRV  409
              + ++   VK +  ++    +  +L+ Y   + G+H+Y+ ++T+V+ +F ++++  N+ 
Sbjct  380  KAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLAFSINKQ  439

Query  410  IYNRLKGKVYFHADngsnkgyk---ksgykTFNVGGIQAIPIGNVSHSSAMNFSQAHTIY  466
            + NRLKG +   ++  +         S    F + G   +P+G V   +A +  ++   Y
Sbjct  440  LRNRLKGDLSKKGQLRNGFIKEKYGASRQMRF-LHGRPVVPLGYVQSKNAQHKRKSINKY  498

Query  467  SEESRVKYGHKEKAAHMKKAFAYLERNFVPNRSIEFNDNRIRRFAQTQGRCEISGVEMAF  526
            +  +R +  HK+ A +    +  L RN V  R+IE+ DNRI  +A   G+C ++G+ M  
Sbjct  499  TVKGREQI-HKNLAIDTATML-WLMRNPVKGRTIEYADNRISLYAAQYGKCAVTGIPMN-  555

Query  527  YPQMVRCHHVKRRADGGDDNYRNLIIVHELAHRLLHATKPNLIEKLMKQLMLSDKQVEKV  586
             ++ ++CHH    ++GG D+Y NLI+V    H L+HA+    IEK +K L L +KQ+EK+
Sbjct  556  -SHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLNLDNKQIEKL  614

Query  587  NKLRSNMNLFTI  598
            NKLRS  ++  I
Sbjct  615  NKLRSMAEMPPI  626

99) H175_285p119 in NC_020384


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  353 bits (1327),  Expect = 2e-98, Method: Compositional matrix adjust.
 Identities = 250/612 (41%), Positives = 395/612 (65%), Gaps = 25/612 (4%)

Query  7    QPQYYNFQGELDGLYVKSKNGGNFKDLYSFIIDERNIKLAFGTIKSNQGSKTPGTDQITI  66
            +++YY+ +G +D LY  SK++  F++L  +I  E NIKLA+ TIK N GS T+G D+ TI
Sbjct  20   NSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDKRTI  79

Query  67   NEYKGFSDDEIIHLVREKLINFKPDSVRRVFIPKADGKSRPLGIPTMLDRIIQQCFKQIL  126
             +   +S++E ++L+R ++ N+ P++VRRV IPK++GK+RPLGIPT++DRI+QQC+ Q++
Sbjct  80   ADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQCILQVM  139

Query  127  EPIVEAKFYEHSYGFRPLRSTHHAIARTNFLININKLHYCVDIDIKGFFDNINHNKLIKQ  186
            EPI EAKF E+S GFRP RS++ AIA+   LI+++ L   VD+DIKGFFDNI+H KLI+Q
Sbjct  140  EPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISHTKLIRQ  199

Query  187  LWNIGVRDKQVLAIIKKMLKCEIV---GEGK-AEKGTPQGGILSPLLANVVLNDLDHWVA  242
            +W +G+RDK++L IIK MLK  +V   GE   + +GTPQGGILSPLLAN+VLN+LD W+A
Sbjct  200  IWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLNELDWWIA  259

Query  243  SQWHNFPTNTHY---------EDNRPRYRVQKKTKLKQGFIVRYADDFKIFTNSYNSAKR  293
            SQW++ PT+T +         E +   YR  ++++LK+   VRYADDFKIF  + + A R
Sbjct  260  SQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCATHEDAVR  319

Query  294  WFHAVKNYIEKNLKLEISESKSKITNLRKRKSLFLGIEfkavakkkkfvaQSYIPKDSMK  353
             + A    +   L LEIS  KSK+ NL+++ S FLG+ +K   K KK+V +S ++  + K
Sbjct  320  AYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHMSDKAYK  379

Query  354  SIQANIKKKVKSIRINT-IPVKVSELNAY---IRGVHDYFKVATQVNKGFHKITYHSNRV  409
              + ++   VK +  ++    +  +L+ Y   + G+H+Y+ ++T+V+ +F ++++  N+ 
Sbjct  380  KAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLAFSINKQ  439

Query  410  IYNRLKGKVYFHADngsnkgyk---ksgykTFNVGGIQAIPIGNVSHSSAMNFSQAHTIY  466
            + NRLKG +   ++  +         S    F + G   +P+G V   +A +  ++   Y
Sbjct  440  LRNRLKGDLSKKGQLRNGFIKEKYGASRQMRF-LHGRPVVPLGYVQSKNAQHKRKSINKY  498

Query  467  SEESRVKYGHKEKAAHMKKAFAYLERNFVPNRSIEFNDNRIRRFAQTQGRCEISGVEMAF  526
            +  +R +  HK+ A +    +  L RN V  R+IE+ DNRI  +A   G+C ++G+ M  
Sbjct  499  TVKGREQI-HKNLAIDTATML-WLMRNPVKGRTIEYADNRISLYAAQYGKCAVTGIPMN-  555

Query  527  YPQMVRCHHVKRRADGGDDNYRNLIIVHELAHRLLHATKPNLIEKLMKQLMLSDKQVEKV  586
             ++ ++CHH    ++GG D+Y NLI+V    H L+HA+    IEK +K L L +KQ+EK+
Sbjct  556  -SHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLNLDNKQIEKL  614

Query  587  NKLRSNMNLFTI  598
            NKLRS  ++  I
Sbjct  615  NKLRSMAEMPPI  626

100) MC28_E108 in NC_018687


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  351 bits (1317),  Expect = 1e-97, Method: Compositional matrix adjust.
 Identities = 246/562 (44%), Positives = 381/562 (68%), Gaps = 24/562 (4%)

Query  1    MQSILDDLYQQSQNGNNFYKLVELMKMDENIRLAYRNIKRNMGSLTAGTDGMTINDIKML  60
            M++ +D LY +S++++ F  L+E++  +ENI+LAYR IK+N GS T+G D  TI D+  L
Sbjct  26   MEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDKRTIADLAKL  85

Query  61   STDEVIEKVKMMFGWYEPQSVRRVFIPKPNGNRRPLGIPTIWDRLFQQCVLQILEPICEA  120
            S +E +  ++  F+ Y+P +VRRV IPKPNG+ RPLGIPTI DR+ QQC+LQ++EPICEA
Sbjct  86   SEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQCILQVMEPICEA  145

Query  121  KFHNHSYGFRPNRSTHHALARMKSLVNRKGNGFHYCVDIDIKGFFDNVHHGKLLKQLWTI  180
            KF ++S GFRPNRS++ A+A+   L++   + +   VD+DIKGFFDN+ H KL++Q+W++
Sbjct  146  KFSENSNGFRPNRSAETAIAQCMRLIQ--VQHLYHVVDLDIKGFFDNISHTKLIRQIWAL  203

Query  181  GIRDkkllsiisrllkAEIV----NEGVPQKGTPQGGILSPLLSNIVLNELDWWVSNQWE  236
            GIRDKKLL II  +LKA +V    +   P +GTPQGGILSPLL+NIVLNELDWW+++QWE
Sbjct  204  GIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLNELDWWIASQWE  263

Query  237  TIKTSHPYKGNSD---------KYRALKKSKLKECFLIRYADDAKILCRDYVTALKMFEA  287
             + T   +K  S+          YRAL++S+LKE   +RYADD KI+C     A++ + A
Sbjct  264  EMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCATHEDAVRAYKA  323

Query  288  TKDFLRTRLHLDISLEKSKIINLRKKASHFLGFTVKANKKGNKHVAHSRMCVKSRKHAYS  347
            T   L+ RL L+IS +KSK++NL+++ S+FLGF +K  KKG+K V +S+M  K+ K A  
Sbjct  324  TELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHMSDKAYKKAHE  383

Query  348  KLKKAVKDISRVQTPESVW----RFNTTVMGIQNYYSAATHINHDLDHMSCHLIRTLYNR  403
            K+   VK ++     ++      ++N+ V G+++YY  +T+++HD+ +++  + + L NR
Sbjct  384  KVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLAFSINKQLRNR  443

Query  404  LRRDRKKATKSDMSTA-LRKRYKRYNPKLYKIKDIVLLPIHAQKHKPARNFTQSISNYTK  462
            L+ D  K  K+++  + ++ +Y       + + +  ++P+   + K A++  +SI++YT 
Sbjct  444  LKGDLSK--KGQLRNGFIKEKYGASRQMRF-LHGRPVVPLGYVQSKNAQHKRKSINKYTV  500

Query  463  EGREKIHDTLKAIDREILRHVQRFYMKHRTVEYNDNRITKFIAQYGKCAITKLEVGLVGW  522
             GRE+IH  L AID   +  + R  +K RT+EY DNRI+ + AQYGKCA+T + +   + 
Sbjct  501  KGREQIHKNL-AIDTATMLWLMRNPVKGRTIEYADNRISLYAAQYGKCAVTGIPMNSHDI  559

Query  523  HCHHKIPLEFGGQDNYENLVIV  544
            HCHHK+P+  GG D+Y NL++V
Sbjct  560  HCHHKVPVSNGGSDEYANLILV  581

101) MC28_E182 in NC_018687


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  350 bits (1315),  Expect = 1e-97, Method: Compositional matrix adjust.
 Identities = 246/562 (44%), Positives = 381/562 (68%), Gaps = 24/562 (4%)

Query  1    MQSILDDLYQQSQNGNNFYKLVELMKMDENIRLAYRNIKRNMGSLTAGTDGMTINDIKML  60
            M++ +D LY +S++++ F  L+E++  +ENI+LAYR IK+N GS T+G D  TI D+  L
Sbjct  26   MEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDKRTIADLAKL  85

Query  61   STDEVIEKVKMMFGWYEPQSVRRVFIPKPNGNRRPLGIPTIWDRLFQQCVLQILEPICEA  120
            S +E +  ++  F+ Y+P +VRRV IPKPNG+ RPLGIPTI DR+ QQC+LQ++EPICEA
Sbjct  86   SEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQCILQVMEPICEA  145

Query  121  KFHNHSYGFRPNRSTHHALARMKSLVNRKGNGFHYCVDIDIKGFFDNVHHGKLLKQLWTI  180
            KF ++S GFRPNRS++ A+A+   L++   + +   VD+DIKGFFDN+ H KL++Q+W++
Sbjct  146  KFSENSNGFRPNRSAETAIAQCMRLIQ--VQHLYHVVDLDIKGFFDNISHTKLIRQIWAL  203

Query  181  GIRDkkllsiisrllkAEIV----NEGVPQKGTPQGGILSPLLSNIVLNELDWWVSNQWE  236
            GIRDKKLL II  +LKA +V    +   P +GTPQGGILSPLL+NIVLNELDWW+++QWE
Sbjct  204  GIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLNELDWWIASQWE  263

Query  237  TIKTSHPYKGNSD---------KYRALKKSKLKECFLIRYADDAKILCRDYVTALKMFEA  287
             + T   +K  S+          YRAL++S+LKE   +RYADD KI+C     A++ + A
Sbjct  264  EMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCATHEDAVRAYKA  323

Query  288  TKDFLRTRLHLDISLEKSKIINLRKKASHFLGFTVKANKKGNKHVAHSRMCVKSRKHAYS  347
            T   L+ RL L+IS +KSK++NL+++ S+FLGF +K  KKG+K V +S+M  K+ K A  
Sbjct  324  TELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHMSDKAYKKAHE  383

Query  348  KLKKAVKDISRVQTPESVW----RFNTTVMGIQNYYSAATHINHDLDHMSCHLIRTLYNR  403
            K+   VK ++     ++      ++N+ V G+++YY  +T+++HD+ +++  + + L NR
Sbjct  384  KVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLAFSINKQLRNR  443

Query  404  LRRDWKKATKSDM-STVLRKRYKRYNPKLYKIKDIVLLPIHAQKHKPARNFTQSISNYTK  462
            L+ D  K  K+++ +  ++ +Y       + + +  ++P+   + K A++  +SI++YT 
Sbjct  444  LKGDLSK--KGQLRNGFIKEKYGASRQMRF-LHGRPVVPLGYVQSKNAQHKRKSINKYTV  500

Query  463  EGREKIHDTLKAIDREILRHVQRFYMKHRTVEYNDNRITKFIAQYGKCAITKLEVGLVGW  522
             GRE+IH  L AID   +  + R  +K RT+EY DNRI+ + AQYGKCA+T + +   + 
Sbjct  501  KGREQIHKNL-AIDTATMLWLMRNPVKGRTIEYADNRISLYAAQYGKCAVTGIPMNSHDI  559

Query  523  HCHHKIPLEFGGQDNYENLVIV  544
            HCHHK+P+  GG D+Y NL++V
Sbjct  560  HCHHKVPVSNGGSDEYANLILV  581

102) MC28_F012 in NC_018688


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  350 bits (1315),  Expect = 1e-97, Method: Compositional matrix adjust.
 Identities = 246/562 (44%), Positives = 381/562 (68%), Gaps = 24/562 (4%)

Query  1    MQSILDDLYQQSQNGNNFYKLVELMKMDENIRLAYRNIKRNMGSLTAGTDGMTINDIKML  60
            M++ +D LY +S++++ F  L+E++  +ENI+LAYR IK+N GS T+G D  TI D+  L
Sbjct  26   MEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDKRTIADLAKL  85

Query  61   STDEVIEKVKMMFGWYEPQSVRRVFIPKPNGNRRPLGIPTIWDRLFQQCVLQILEPICEA  120
            S +E +  ++  F+ Y+P +VRRV IPKPNG+ RPLGIPTI DR+ QQC+LQ++EPICEA
Sbjct  86   SEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQCILQVMEPICEA  145

Query  121  KFHNHSYGFRPNRSTHHALARMKSLVNRKGNGFHYCVDIDIKGFFDNVHHGKLLKQLWTI  180
            KF ++S GFRPNRS++ A+A+   L++   + +   VD+DIKGFFDN+ H KL++Q+W++
Sbjct  146  KFSENSNGFRPNRSAETAIAQCMRLIQ--VQHLYHVVDLDIKGFFDNISHTKLIRQIWAL  203

Query  181  GIRDkkllsiisrllkAEIV----NEGVPQKGTPQGGILSPLLSNIVLNELDWWVSNQWE  236
            GIRDKKLL II  +LKA +V    +   P +GTPQGGILSPLL+NIVLNELDWW+++QWE
Sbjct  204  GIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLNELDWWIASQWE  263

Query  237  TIKTSHPYKGNSD---------KYRALKKSKLKECFLIRYADDAKILCRDYVTALKMFEA  287
             + T   +K  S+          YRAL++S+LKE   +RYADD KI+C     A++ + A
Sbjct  264  EMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCATHEDAVRAYKA  323

Query  288  TKDFLRTRLHLDISLEKSKIINLRKKASHFLGFTVKANKKGNKHVAHSRMCVKSRKHAYS  347
            T   L+ RL L+IS +KSK++NL+++ S+FLGF +K  KKG+K V +S+M  K+ K A  
Sbjct  324  TELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHMSDKAYKKAHE  383

Query  348  KLKKAVKDISRVQTPESVW----RFNTTVMGIQNYYSAATHINHDLDHMSCHLIRTLYNR  403
            K+   VK ++     ++      ++N+ V G+++YY  +T+++HD+ +++  + + L NR
Sbjct  384  KVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLAFSINKQLRNR  443

Query  404  LRRDWKKATKSDM-STVLRKRYKRYNPKLYKIKDIVLLPIHAQKHKPARNFTQSISNYTK  462
            L+ D  K  K+++ +  ++ +Y       + + +  ++P+   + K A++  +SI++YT 
Sbjct  444  LKGDLSK--KGQLRNGFIKEKYGASRQMRF-LHGRPVVPLGYVQSKNAQHKRKSINKYTV  500

Query  463  EGREKIHDTLKAIDREILRHVQRFYMKHRTVEYNDNRITKFIAQYGKCAITKLEVGLVGW  522
             GRE+IH  L AID   +  + R  +K RT+EY DNRI+ + AQYGKCA+T + +   + 
Sbjct  501  KGREQIHKNL-AIDTATMLWLMRNPVKGRTIEYADNRISLYAAQYGKCAVTGIPMNSHDI  559

Query  523  HCHHKIPLEFGGQDNYENLVIV  544
            HCHHK+P+  GG D+Y NL++V
Sbjct  560  HCHHKVPVSNGGSDEYANLILV  581

103) CbC4_4059 in NC_015417


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  345 bits (1297),  Expect = 4e-96, Method: Compositional matrix adjust.
 Identities = 246/560 (44%), Positives = 364/560 (65%), Gaps = 25/560 (4%)

Query  4    KKKLRHNEYYDVQDTFDTLYYKSQKGYNFYKLVNIMSDEDNIRLAYRNiksntgsktkgt  63
            ++K+R++EYYD+++TFD LY  S+K+  F  L++I+  E+NI+LAYR IK NTGS T G 
Sbjct  15   QRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGV  74

Query  64   dgstikdINNIDIDEVITKIKTMFDFYTPKSIRRVEIPKANGKTRPLGIPTIWDRLFQQC  123
            D  TI D+ ++  +E +  I+  F  Y P ++RRVEIPK+NGKTRPLGIPTI DR+ QQC
Sbjct  75   DKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQC  134

Query  124  ILQVLEPICEAKFHKHSYGFRPNRSTHHAITRSVYLINITKLYHCVDVDIKGFFDNVNHG  183
            ILQV+EPICEAKF  +S GFRPNRS++ AI++ + LI++  LYH VD+DIKGFFDN++H 
Sbjct  135  ILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISHT  194

Query  184  KLLKQLWALGVKDKKLLKIISVMLKAPI----EGIGIPTKGVPQGGILSPLLSNIVLNEL  239
            KL++Q+WALG++DKKLL II  MLKAP+         P++G PQGGILSPLL+NIVLNEL
Sbjct  195  KLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLNEL  254

Query  240  DWWVSNQWETFKTDKDYTKYRTSKTGKIVVDHSIRNKMLKKSKLKEIYIVRYADDFKIFC  299
            DWW+++QWE   T   + K R++  G  +  H+ R   L++S+LKE+  VRYADDFKIFC
Sbjct  255  DWWIASQWEEMPTKTKF-KTRSNAQGTEIKSHAYRA--LRRSRLKEMHAVRYADDFKIFC  311

Query  300  RTRSQAKAIDIAVGDM-LKNRLGLECSAEKSKVLNLKKSYSEFLGFKMKAEWKRNKLRKT  358
             T+ +A        ++ LK+RLGLE S++KSKV+NLK+ YS+FLGFK+K        +K 
Sbjct  312  ATHEDA-VRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVR------KKG  364

Query  359  KDYKTLWVAKTYMSDKA--KTNAttkirkeikkikkrptkS--NINSYNSVVHGIQNYYK  414
            K Y    V ++ MSDKA  K++                     +++ YNSVV G+++YY 
Sbjct  365  KKY----VVRSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYC  420

Query  415  VATHITKNLRDINYSCSQTLKGLKNNRTEAKTENLSMHQRKRYKGYNPKYFMISGVVMSP  474
            ++T+++ ++  + +S ++ L+   +     K +  +   + +Y +     F+ +  V++ 
Sbjct  421  ISTEVSHDFSRLAFSINKQLRNRLKGDLSKKGQLRNGFIKEKYGASRQMRFLHGRPVVPL  480

Query  475  IYAQKNVTPINFSQDICNYTKVGRGTIHQSLKHINKDTLKYIKESYIPTMSIEYNDNRIS  534
             Y Q + +  +  + I +YT  GR  IH++L  I+  T+  +  + +   +IEY DNRIS
Sbjct  481  GYVQSKNAQHK-RKSINKYTVKGREQIHKNLA-IDTATMLWLMRNPVKGRTIEYADNRIS  538

Query  535  KYIAQHGKCISAIMGMQESD  554
             Y AQ GKC  + + M+  D
Sbjct  539  LYAAQYGKCAVTGIPMNSHD  558

104) B1NLA3E_02610 in NC_021171


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  335 bits (1256),  Expect = 7e-93, Method: Compositional matrix adjust.
 Identities = 250/613 (41%), Positives = 388/613 (64%), Gaps = 23/613 (3%)

Query  4    LRYWDYYSMTETFTDLYDRATRKESFTRLYDIITSRENILLSYRIIKSNKGSKTAGTDGK  63
            +R  +YY M  TF  LY  + +  +F +L +II S ENI L+YR IK N GS T+G D +
Sbjct  18   IRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDKR  77

Query  64   TISDIKILSEDELVTTVQSKLRNYRPKKVRRKLIEKENGKMRPLGIPCILDRIIQQCFKQ  123
            TI+D+  LSE+E V  ++ ++ NY+P  VRR  I K NGK RPLGIP I+DRI+QQC+ Q
Sbjct  78   TIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQCILQ  137

Query  124  VLEPIAEAQFYKHSYGFRPLRSTHHAMARVQSLVNHASLHYVVDIDIKGFFDNINHTLLI  183
            V+EPI EA+F  +S GFRP RS++ A+A+   L++   L  VVD+DIKGFFDNI+HT LI
Sbjct  138  VMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISHTKLI  197

Query  184  KQLWNLGIQDKKVLACISKMLKAEI---DGEGI-PSKGAPQggllspllsnvvlndldQW  239
            +Q+W LGI+DKK+L  I  MLKA +   +GE   P++G+PQGG+LSPLL+N+VLN+LD W
Sbjct  198  RQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLNELDWW  257

Query  240  VSTQWEFFPLNRPYETREGQLCAK---------KRTNLKEGYLVRYADDFKILCRDWKIA  290
            +++QWE  P +  + TR     +          +R+ LKE   VRYADDFKI+C     A
Sbjct  258  IASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCATHEDA  317

Query  291  QRWFAAVRQYLKDRLKLDISPEKSQIVNLRKRNSEFLGFTIRANKKRNKRVAHTGIKDNK  350
             R + A    LKDRL L+ISP+KS++VNL+++ S+FLGF ++  KK +K V ++ + D+ 
Sbjct  318  VRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHMSDKA  377

Query  351  RQKIKAEAKKRIQILRVSPTSQNALL----FNSFVLGMHNYFNRATHVNIEFSRIAYELQ  406
             +K        ++ L  S+  +  ++    +NS V G+H+Y+  +T+V+ +FSR+A+ ++
Sbjct  378  YKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLAFSIN  437

Query  407  SFMYNRLKSVGIYEHPSNASPTY--KKFYSRGTKTFKVANVYLFPLSNVKTRNAMNFSHG  464
              + NRLK  G     ++    +   K+ +     F  +   + PL+ V+++NA +   +
Sbjct  438  KQLRNRLK--GDLSKKGQLRNGFIKEKYGASRQMRFLHGRP-VVPLGYVQSKNAQHKRKS  494

Query  465  LTPFTIEGRARIHKKIQTDIQREIALLMKSNIQARSVEYLDNRISRYSMKMGKCEITGNF  524
            +  +T+ GR +IHK++  D    +  LM++ +++R++EY DNRIS Y+ + GKC +TG  
Sbjct  495  INKYTVKGREQIHKNLAIDTA-TMLWLMRNPVKGRTIEYADNRISLYAAQYGKCAVTGIP  553

Query  525  LYANEVHCHHYIPVHLDGSDQFKNLRILHKDVHQLIHMTDKKTITILISKLGISGPMVQK  584
            + ++++HCHH +PV  +GSD++ NL ++ K VH LIH +   TI   +  L +    ++K
Sbjct  554  MNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLNLDNKQIEK  613

Query  585  INTYREKCGIEPI  597
            +N  R    + PI
Sbjct  614  LNKLRSMAEMPPI  626

105) B1NLA3E_02640 in NC_021171


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  335 bits (1256),  Expect = 7e-93, Method: Compositional matrix adjust.
 Identities = 250/613 (41%), Positives = 388/613 (64%), Gaps = 23/613 (3%)

Query  4    LRYWDYYSMTETFTDLYDRATRKESFTRLYDIITSRENILLSYRIIKSNKGSKTAGTDGK  63
            +R  +YY M  TF  LY  + +  +F +L +II S ENI L+YR IK N GS T+G D +
Sbjct  18   IRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDKR  77

Query  64   TISDIKILSEDELVTTVQSKLRNYRPKKVRRKLIEKENGKMRPLGIPCILDRIIQQCFKQ  123
            TI+D+  LSE+E V  ++ ++ NY+P  VRR  I K NGK RPLGIP I+DRI+QQC+ Q
Sbjct  78   TIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQCILQ  137

Query  124  VLEPIAEAQFYKHSYGFRPLRSTHHAMARVQSLVNHASLHYVVDIDIKGFFDNINHTLLI  183
            V+EPI EA+F  +S GFRP RS++ A+A+   L++   L  VVD+DIKGFFDNI+HT LI
Sbjct  138  VMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISHTKLI  197

Query  184  KQLWNLGIQDKKVLACISKMLKAEI---DGEGI-PSKGAPQggllspllsnvvlndldQW  239
            +Q+W LGI+DKK+L  I  MLKA +   +GE   P++G+PQGG+LSPLL+N+VLN+LD W
Sbjct  198  RQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLNELDWW  257

Query  240  VSTQWEFFPLNRPYETREGQLCAK---------KRTNLKEGYLVRYADDFKILCRDWKIA  290
            +++QWE  P +  + TR     +          +R+ LKE   VRYADDFKI+C     A
Sbjct  258  IASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCATHEDA  317

Query  291  QRWFAAVRQYLKDRLKLDISPEKSQIVNLRKRNSEFLGFTIRANKKRNKRVAHTGIKDNK  350
             R + A    LKDRL L+ISP+KS++VNL+++ S+FLGF ++  KK +K V ++ + D+ 
Sbjct  318  VRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHMSDKA  377

Query  351  RQKIKAEAKKRIQILRVSPTSQNALL----FNSFVLGMHNYFNRATHVNIEFSRIAYELQ  406
             +K        ++ L  S+  +  ++    +NS V G+H+Y+  +T+V+ +FSR+A+ ++
Sbjct  378  YKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLAFSIN  437

Query  407  SFMYNRLKSVGIYEHPSNASPTY--KKFYSRGTKTFKVANVYLFPLSNVKTRNAMNFSHG  464
              + NRLK  G     ++    +   K+ +     F  +   + PL+ V+++NA +   +
Sbjct  438  KQLRNRLK--GDLSKKGQLRNGFIKEKYGASRQMRFLHGRP-VVPLGYVQSKNAQHKRKS  494

Query  465  LTPFTIEGRARIHKKIQTDIQREIALLMKSNIQARSVEYLDNRISRYSMKMGKCEITGNF  524
            +  +T+ GR +IHK++  D    +  LM++ +++R++EY DNRIS Y+ + GKC +TG  
Sbjct  495  INKYTVKGREQIHKNLAIDTA-TMLWLMRNPVKGRTIEYADNRISLYAAQYGKCAVTGIP  553

Query  525  LYANEVHCHHYIPVHLDGSDQFKNLRILHKDVHQLIHMTDKKTITILISKLGISGPMVQK  584
            + ++++HCHH +PV  +GSD++ NL ++ K VH LIH +   TI   +  L +    ++K
Sbjct  554  MNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLNLDNKQIEK  613

Query  585  INTYREKCGIEPI  597
            +N  R    + PI
Sbjct  614  LNKLRSMAEMPPI  626

106) B1NLA3E_13640 in NC_021171


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  335 bits (1256),  Expect = 7e-93, Method: Compositional matrix adjust.
 Identities = 250/613 (41%), Positives = 388/613 (64%), Gaps = 23/613 (3%)

Query  4    LRYWDYYSMTETFTDLYDRATRKESFTRLYDIITSRENILLSYRIIKSNKGSKTAGTDGK  63
            +R  +YY M  TF  LY  + +  +F +L +II S ENI L+YR IK N GS T+G D +
Sbjct  18   IRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDKR  77

Query  64   TISDIKILSEDELVTTVQSKLRNYRPKKVRRKLIEKENGKMRPLGIPCILDRIIQQCFKQ  123
            TI+D+  LSE+E V  ++ ++ NY+P  VRR  I K NGK RPLGIP I+DRI+QQC+ Q
Sbjct  78   TIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQCILQ  137

Query  124  VLEPIAEAQFYKHSYGFRPLRSTHHAMARVQSLVNHASLHYVVDIDIKGFFDNINHTLLI  183
            V+EPI EA+F  +S GFRP RS++ A+A+   L++   L  VVD+DIKGFFDNI+HT LI
Sbjct  138  VMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISHTKLI  197

Query  184  KQLWNLGIQDKKVLACISKMLKAEI---DGEGI-PSKGAPQggllspllsnvvlndldQW  239
            +Q+W LGI+DKK+L  I  MLKA +   +GE   P++G+PQGG+LSPLL+N+VLN+LD W
Sbjct  198  RQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLNELDWW  257

Query  240  VSTQWEFFPLNRPYETREGQLCAK---------KRTNLKEGYLVRYADDFKILCRDWKIA  290
            +++QWE  P +  + TR     +          +R+ LKE   VRYADDFKI+C     A
Sbjct  258  IASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCATHEDA  317

Query  291  QRWFAAVRQYLKDRLKLDISPEKSQIVNLRKRNSEFLGFTIRANKKRNKRVAHTGIKDNK  350
             R + A    LKDRL L+ISP+KS++VNL+++ S+FLGF ++  KK +K V ++ + D+ 
Sbjct  318  VRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHMSDKA  377

Query  351  RQKIKAEAKKRIQILRVSPTSQNALL----FNSFVLGMHNYFNRATHVNIEFSRIAYELQ  406
             +K        ++ L  S+  +  ++    +NS V G+H+Y+  +T+V+ +FSR+A+ ++
Sbjct  378  YKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLAFSIN  437

Query  407  SFMYNRLKSVGIYEHPSNASPTY--KKFYSRGTKTFKVANVYLFPLSNVKTRNAMNFSHG  464
              + NRLK  G     ++    +   K+ +     F  +   + PL+ V+++NA +   +
Sbjct  438  KQLRNRLK--GDLSKKGQLRNGFIKEKYGASRQMRFLHGRP-VVPLGYVQSKNAQHKRKS  494

Query  465  LTPFTIEGRARIHKKIQTDIQREIALLMKSNIQARSVEYLDNRISRYSMKMGKCEITGNF  524
            +  +T+ GR +IHK++  D    +  LM++ +++R++EY DNRIS Y+ + GKC +TG  
Sbjct  495  INKYTVKGREQIHKNLAIDTA-TMLWLMRNPVKGRTIEYADNRISLYAAQYGKCAVTGIP  553

Query  525  LYANEVHCHHYIPVHLDGSDQFKNLRILHKDVHQLIHMTDKKTITILISKLGISGPMVQK  584
            + ++++HCHH +PV  +GSD++ NL ++ K VH LIH +   TI   +  L +    ++K
Sbjct  554  MNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLNLDNKQIEK  613

Query  585  INTYREKCGIEPI  597
            +N  R    + PI
Sbjct  614  LNKLRSMAEMPPI  626

107) ltrA1 in NC_018877


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  332 bits (1247),  Expect = 3e-92, Method: Compositional matrix adjust.
 Identities = 248/619 (41%), Positives = 397/619 (65%), Gaps = 34/619 (5%)

Query  5    MRYWEYYNMQETFDRLYEESQGNKSFHGLYELITSENNILLAYRTIKSNKGSKTAGTDLF  64
            +R  EYY+M+ TFDRLY ES+ +K+F+ L E+I SE+NI LAYRTIK N GS T+G D  
Sbjct  18   IRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDKR  77

Query  65   TIDNYKPMYKKEFLSLVCKQLEIYKPKAVKRVFIPKSNGDKRPLGIPTMFDRLIQQMIRQ  124
            TI +   +   E++ L+ KQ+  Y P +V+RV IPK+NG  RPLGIPT+ DR++QQ I Q
Sbjct  78   TIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQCILQ  137

Query  125  ILEPICEAKFYEHSYGFRPMRGTKHAISRVMFLISRNTFHYAVDIDIKGFFDNVNHTLLL  184
            ++EPICEAKF E+S GFRP R++  AI++ M LI  + +   VD+DIKGFFDN++HT L+
Sbjct  138  VMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISHTKLI  197

Query  185  KQLWNMGIKDKRVLKLIYLILKAPI------KGFGIPKKGTPQGGILSPLLSNIVLNDLD  238
            +Q+W +GI+DK++L +I  +LKAP+      K +  P +GTPQGGILSPLL+NIVLN+LD
Sbjct  198  RQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTY--PARGTPQGGILSPLLANIVLNELD  255

Query  239  QWIASQWHYFETSYPYTNNANQK---------RAMKGTKLKQGFIVRYADDFKIMAKDFR  289
             WIASQW+   T   +   +N +         RA++ ++LK+   VRYADDFKI      
Sbjct  256  WWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCATHE  315

Query  290  TAQKWFFATKMYLKERLKLDISPEKSRIINLRKNKSEFLGYLLYVVPKRNKWVCNSRisn  349
             A + + AT + LK+RL L+ISP+KS+++NL+++ S+FLG+ L V  K +K V  S++S+
Sbjct  316  DAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHMSD  375

Query  350  kkkkqikleikkrikAIQLSSTRK----NVQLYNAYVLGLRNYFRYVTHVNIEMKQLAFN  405
            K  K+    +   +K +  SS  +    ++Q YN+ V GL++Y+   T+V+ +  +LAF+
Sbjct  376  KAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLAFS  435

Query  406  LSLVIFNRLKSVGKYEVPINAPPVFTKFFKNNYRTFK----VCGIYLFPLADIQTATIWN  461
            ++  + NRLK+    +++ ++  +   F+K++Y + +    + G  + PL+ +Q+    +
Sbjct  436  INKQLRNRLKG----DLSKKG-QLRNGFIKEKYGASRQMRFLHGRPVVPLGYVQSKNAQH  490

Query  462  YTQTQTPYNQKGR-KIAKHIELNKLVLGEIKKLLTANIPNESIEYLDNRMARYSMLNGKC  520
              ++   Y  KGR +I K++ ++    + +  L+   +   +IEY DNR++ Y+   GKC
Sbjct  491  KRKSINKYTVKGREQIHKNLAIDT---ATMLWLMRNPVKGRTIEYADNRISLYAAQYGKC  547

Query  521  EILKEFLPASELHCHHYIPKGLGGTDEYENLRIIHKEIHRLIHMTNKQTIESYFQKHSLT  580
             +    + + ++HCHH +P + GG+DEY NL ++ K +H LIH ++  TIE Y++  +L 
Sbjct  548  AVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLNLD  607

Query  581  VEQVKRINQYRRACNLEKI  599
              Q+ ++N+ R   ++  I
Sbjct  608  NKQIEKLNKLRSMAEMPPI  626

108) ltrA2 in NC_018877


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  332 bits (1247),  Expect = 3e-92, Method: Compositional matrix adjust.
 Identities = 248/619 (41%), Positives = 397/619 (65%), Gaps = 34/619 (5%)

Query  5    MRYWEYYNMQETFDRLYEESQGNKSFHGLYELITSENNILLAYRTIKSNKGSKTAGTDLF  64
            +R  EYY+M+ TFDRLY ES+ +K+F+ L E+I SE+NI LAYRTIK N GS T+G D  
Sbjct  18   IRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDKR  77

Query  65   TIDNYKPMYKKEFLSLVCKQLEIYKPKAVKRVFIPKSNGDKRPLGIPTMFDRLIQQMIRQ  124
            TI +   +   E++ L+ KQ+  Y P +V+RV IPK+NG  RPLGIPT+ DR++QQ I Q
Sbjct  78   TIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQCILQ  137

Query  125  ILEPICEAKFYEHSYGFRPMRGTKHAISRVMFLISRNTFHYAVDIDIKGFFDNVNHTLLL  184
            ++EPICEAKF E+S GFRP R++  AI++ M LI  + +   VD+DIKGFFDN++HT L+
Sbjct  138  VMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISHTKLI  197

Query  185  KQLWNMGIKDKRVLKLIYLILKAPI------KGFGIPKKGTPQGGILSPLLSNIVLNDLD  238
            +Q+W +GI+DK++L +I  +LKAP+      K +  P +GTPQGGILSPLL+NIVLN+LD
Sbjct  198  RQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTY--PARGTPQGGILSPLLANIVLNELD  255

Query  239  QWIASQWHYFETSYPYTNNANQK---------RAMKGTKLKQGFIVRYADDFKIMAKDFR  289
             WIASQW+   T   +   +N +         RA++ ++LK+   VRYADDFKI      
Sbjct  256  WWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCATHE  315

Query  290  TAQKWFFATKMYLKERLKLDISPEKSRIINLRKNKSEFLGYLLYVVPKRNKWVCNSRisn  349
             A + + AT + LK+RL L+ISP+KS+++NL+++ S+FLG+ L V  K +K V  S++S+
Sbjct  316  DAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHMSD  375

Query  350  kkkkqikleikkrikAIQLSSTRK----NVQLYNAYVLGLRNYFRYVTHVNIEMKQLAFN  405
            K  K+    +   +K +  SS  +    ++Q YN+ V GL++Y+   T+V+ +  +LAF+
Sbjct  376  KAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLAFS  435

Query  406  LSLVIFNRLKSVGKYEVPINAPPVFTKFFKNNYRTFK----VCGIYLFPLADIQTATIWN  461
            ++  + NRLK+    +++ ++  +   F+K++Y + +    + G  + PL+ +Q+    +
Sbjct  436  INKQLRNRLKG----DLSKKG-QLRNGFIKEKYGASRQMRFLHGRPVVPLGYVQSKNAQH  490

Query  462  YTQTQTPYNQKGR-KIAKHIELNKLVLGEIKKLLTANIPNESIEYLDNRMARYSMLNGKC  520
              ++   Y  KGR +I K++ ++    + +  L+   +   +IEY DNR++ Y+   GKC
Sbjct  491  KRKSINKYTVKGREQIHKNLAIDT---ATMLWLMRNPVKGRTIEYADNRISLYAAQYGKC  547

Query  521  EILKEFLPASELHCHHYIPKGLGGTDEYENLRIIHKEIHRLIHMTNKQTIESYFQKHSLT  580
             +    + + ++HCHH +P + GG+DEY NL ++ K +H LIH ++  TIE Y++  +L 
Sbjct  548  AVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLNLD  607

Query  581  VEQVKRINQYRRACNLEKI  599
              Q+ ++N+ R   ++  I
Sbjct  608  NKQIEKLNKLRSMAEMPPI  626

109) CT43_P281096 in NC_017203


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  332 bits (1247),  Expect = 3e-92, Method: Compositional matrix adjust.
 Identities = 248/619 (41%), Positives = 397/619 (65%), Gaps = 34/619 (5%)

Query  5    MRYWEYYNMQETFDRLYEESQGNKSFHGLYELITSENNILLAYRTIKSNKGSKTAGTDLF  64
            +R  EYY+M+ TFDRLY ES+ +K+F+ L E+I SE+NI LAYRTIK N GS T+G D  
Sbjct  18   IRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDKR  77

Query  65   TIDNYKPMYKKEFLSLVCKQLEIYKPKAVKRVFIPKSNGDKRPLGIPTMFDRLIQQMIRQ  124
            TI +   +   E++ L+ KQ+  Y P +V+RV IPK+NG  RPLGIPT+ DR++QQ I Q
Sbjct  78   TIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQCILQ  137

Query  125  ILEPICEAKFYEHSYGFRPMRGTKHAISRVMFLISRNTFHYAVDIDIKGFFDNVNHTLLL  184
            ++EPICEAKF E+S GFRP R++  AI++ M LI  + +   VD+DIKGFFDN++HT L+
Sbjct  138  VMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISHTKLI  197

Query  185  KQLWNMGIKDKRVLKLIYLILKAPI------KGFGIPKKGTPQGGILSPLLSNIVLNDLD  238
            +Q+W +GI+DK++L +I  +LKAP+      K +  P +GTPQGGILSPLL+NIVLN+LD
Sbjct  198  RQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTY--PARGTPQGGILSPLLANIVLNELD  255

Query  239  QWIASQWHYFETSYPYTNNANQK---------RAMKGTKLKQGFIVRYADDFKIMAKDFR  289
             WIASQW+   T   +   +N +         RA++ ++LK+   VRYADDFKI      
Sbjct  256  WWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCATHE  315

Query  290  TAQKWFFATKMYLKERLKLDISPEKSRIINLRKNKSEFLGYLLYVVPKRNKWVCNSRisn  349
             A + + AT + LK+RL L+ISP+KS+++NL+++ S+FLG+ L V  K +K V  S++S+
Sbjct  316  DAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHMSD  375

Query  350  kkkkqikleikkrikAIQLSSTRK----NVQLYNAYVLGLRNYFRYVTHVNIEMKQLAFN  405
            K  K+    +   +K +  SS  +    ++Q YN+ V GL++Y+   T+V+ +  +LAF+
Sbjct  376  KAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLAFS  435

Query  406  LSLVIFNRLKSVGKYEVPINAPPVFTKFFKNNYRTFK----VCGIYLFPLADIQTATIWN  461
            ++  + NRLK+    +++ ++  +   F+K++Y + +    + G  + PL+ +Q+    +
Sbjct  436  INKQLRNRLKG----DLSKKG-QLRNGFIKEKYGASRQMRFLHGRPVVPLGYVQSKNAQH  490

Query  462  YTQTQTPYNQKGR-KIAKHIELNKLVLGEIKKLLTANIPNESIEYLDNRMARYSMLNGKC  520
              ++   Y  KGR +I K++ ++    + +  L+   +   +IEY DNR++ Y+   GKC
Sbjct  491  KRKSINKYTVKGREQIHKNLAIDT---ATMLWLMRNPVKGRTIEYADNRISLYAAQYGKC  547

Query  521  EILKEFLPASELHCHHYIPKGLGGTDEYENLRIIHKEIHRLIHMTNKQTIESYFQKHSLT  580
             +    + + ++HCHH +P + GG+DEY NL ++ K +H LIH ++  TIE Y++  +L 
Sbjct  548  AVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLNLD  607

Query  581  VEQVKRINQYRRACNLEKI  599
              Q+ ++N+ R   ++  I
Sbjct  608  NKQIEKLNKLRSMAEMPPI  626

110) CT43_CH0952 in NC_017208


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  332 bits (1247),  Expect = 3e-92, Method: Compositional matrix adjust.
 Identities = 248/619 (41%), Positives = 397/619 (65%), Gaps = 34/619 (5%)

Query  5    MRYWEYYNMQETFDRLYEESQGNKSFHGLYELITSENNILLAYRTIKSNKGSKTAGTDLF  64
            +R  EYY+M+ TFDRLY ES+ +K+F+ L E+I SE+NI LAYRTIK N GS T+G D  
Sbjct  18   IRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDKR  77

Query  65   TIDNYKPMYKKEFLSLVCKQLEIYKPKAVKRVFIPKSNGDKRPLGIPTMFDRLIQQMIRQ  124
            TI +   +   E++ L+ KQ+  Y P +V+RV IPK+NG  RPLGIPT+ DR++QQ I Q
Sbjct  78   TIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQCILQ  137

Query  125  ILEPICEAKFYEHSYGFRPMRGTKHAISRVMFLISRNTFHYAVDIDIKGFFDNVNHTLLL  184
            ++EPICEAKF E+S GFRP R++  AI++ M LI  + +   VD+DIKGFFDN++HT L+
Sbjct  138  VMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISHTKLI  197

Query  185  KQLWNMGIKDKRVLKLIYLILKAPI------KGFGIPKKGTPQGGILSPLLSNIVLNDLD  238
            +Q+W +GI+DK++L +I  +LKAP+      K +  P +GTPQGGILSPLL+NIVLN+LD
Sbjct  198  RQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTY--PARGTPQGGILSPLLANIVLNELD  255

Query  239  QWIASQWHYFETSYPYTNNANQK---------RAMKGTKLKQGFIVRYADDFKIMAKDFR  289
             WIASQW+   T   +   +N +         RA++ ++LK+   VRYADDFKI      
Sbjct  256  WWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCATHE  315

Query  290  TAQKWFFATKMYLKERLKLDISPEKSRIINLRKNKSEFLGYLLYVVPKRNKWVCNSRisn  349
             A + + AT + LK+RL L+ISP+KS+++NL+++ S+FLG+ L V  K +K V  S++S+
Sbjct  316  DAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHMSD  375

Query  350  kkkkqikleikkrikAIQLSSTRK----NVQLYNAYVLGLRNYFRYVTHVNIEMKQLAFN  405
            K  K+    +   +K +  SS  +    ++Q YN+ V GL++Y+   T+V+ +  +LAF+
Sbjct  376  KAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLAFS  435

Query  406  LSLVIFNRLKSVGKYEVPINAPPVFTKFFKNNYRTFK----VCGIYLFPLADIQTATIWN  461
            ++  + NRLK+    +++ ++  +   F+K++Y + +    + G  + PL+ +Q+    +
Sbjct  436  INKQLRNRLKG----DLSKKG-QLRNGFIKEKYGASRQMRFLHGRPVVPLGYVQSKNAQH  490

Query  462  YTQTQTPYNQKGR-KIAKHIELNKLVLGEIKKLLTANIPNESIEYLDNRMARYSMLNGKC  520
              ++   Y  KGR +I K++ ++    + +  L+   +   +IEY DNR++ Y+   GKC
Sbjct  491  KRKSINKYTVKGREQIHKNLAIDT---ATMLWLMRNPVKGRTIEYADNRISLYAAQYGKC  547

Query  521  EILKEFLPASELHCHHYIPKGLGGTDEYENLRIIHKEIHRLIHMTNKQTIESYFQKHSLT  580
             +    + + ++HCHH +P + GG+DEY NL ++ K +H LIH ++  TIE Y++  +L 
Sbjct  548  AVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLNLD  607

Query  581  VEQVKRINQYRRACNLEKI  599
              Q+ ++N+ R   ++  I
Sbjct  608  NKQIEKLNKLRSMAEMPPI  626

111) H175_ch0545 in NC_020376


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  332 bits (1247),  Expect = 3e-92, Method: Compositional matrix adjust.
 Identities = 248/619 (41%), Positives = 397/619 (65%), Gaps = 34/619 (5%)

Query  5    MRYWEYYNMQETFDRLYEESQGNKSFHGLYELITSENNILLAYRTIKSNKGSKTAGTDLF  64
            +R  EYY+M+ TFDRLY ES+ +K+F+ L E+I SE+NI LAYRTIK N GS T+G D  
Sbjct  18   IRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDKR  77

Query  65   TIDNYKPMYKKEFLSLVCKQLEIYKPKAVKRVFIPKSNGDKRPLGIPTMFDRLIQQMIRQ  124
            TI +   +   E++ L+ KQ+  Y P +V+RV IPK+NG  RPLGIPT+ DR++QQ I Q
Sbjct  78   TIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQCILQ  137

Query  125  ILEPICEAKFYEHSYGFRPMRGTKHAISRVMFLISRNTFHYAVDIDIKGFFDNVNHTLLL  184
            ++EPICEAKF E+S GFRP R++  AI++ M LI  + +   VD+DIKGFFDN++HT L+
Sbjct  138  VMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISHTKLI  197

Query  185  KQLWNMGIKDKRVLKLIYLILKAPI------KGFGIPKKGTPQGGILSPLLSNIVLNDLD  238
            +Q+W +GI+DK++L +I  +LKAP+      K +  P +GTPQGGILSPLL+NIVLN+LD
Sbjct  198  RQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTY--PARGTPQGGILSPLLANIVLNELD  255

Query  239  QWIASQWHYFETSYPYTNNANQK---------RAMKGTKLKQGFIVRYADDFKIMAKDFR  289
             WIASQW+   T   +   +N +         RA++ ++LK+   VRYADDFKI      
Sbjct  256  WWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCATHE  315

Query  290  TAQKWFFATKMYLKERLKLDISPEKSRIINLRKNKSEFLGYLLYVVPKRNKWVCNSRisn  349
             A + + AT + LK+RL L+ISP+KS+++NL+++ S+FLG+ L V  K +K V  S++S+
Sbjct  316  DAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHMSD  375

Query  350  kkkkqikleikkrikAIQLSSTRK----NVQLYNAYVLGLRNYFRYVTHVNIEMKQLAFN  405
            K  K+    +   +K +  SS  +    ++Q YN+ V GL++Y+   T+V+ +  +LAF+
Sbjct  376  KAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLAFS  435

Query  406  LSLVIFNRLKSVGKYEVPINAPPVFTKFFKNNYRTFK----VCGIYLFPLADIQTATIWN  461
            ++  + NRLK+    +++ ++  +   F+K++Y + +    + G  + PL+ +Q+    +
Sbjct  436  INKQLRNRLKG----DLSKKG-QLRNGFIKEKYGASRQMRFLHGRPVVPLGYVQSKNAQH  490

Query  462  YTQTQTPYNQKGR-KIAKHIELNKLVLGEIKKLLTANIPNESIEYLDNRMARYSMLNGKC  520
              ++   Y  KGR +I K++ ++    + +  L+   +   +IEY DNR++ Y+   GKC
Sbjct  491  KRKSINKYTVKGREQIHKNLAIDT---ATMLWLMRNPVKGRTIEYADNRISLYAAQYGKC  547

Query  521  EILKEFLPASELHCHHYIPKGLGGTDEYENLRIIHKEIHRLIHMTNKQTIESYFQKHSLT  580
             +    + + ++HCHH +P + GG+DEY NL ++ K +H LIH ++  TIE Y++  +L 
Sbjct  548  AVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLNLD  607

Query  581  VEQVKRINQYRRACNLEKI  599
              Q+ ++N+ R   ++  I
Sbjct  608  NKQIEKLNKLRSMAEMPPI  626

112) H175_ch0965 in NC_020376


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  332 bits (1247),  Expect = 3e-92, Method: Compositional matrix adjust.
 Identities = 248/619 (41%), Positives = 397/619 (65%), Gaps = 34/619 (5%)

Query  5    MRYWEYYNMQETFDRLYEESQGNKSFHGLYELITSENNILLAYRTIKSNKGSKTAGTDLF  64
            +R  EYY+M+ TFDRLY ES+ +K+F+ L E+I SE+NI LAYRTIK N GS T+G D  
Sbjct  18   IRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDKR  77

Query  65   TIDNYKPMYKKEFLSLVCKQLEIYKPKAVKRVFIPKSNGDKRPLGIPTMFDRLIQQMIRQ  124
            TI +   +   E++ L+ KQ+  Y P +V+RV IPK+NG  RPLGIPT+ DR++QQ I Q
Sbjct  78   TIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQCILQ  137

Query  125  ILEPICEAKFYEHSYGFRPMRGTKHAISRVMFLISRNTFHYAVDIDIKGFFDNVNHTLLL  184
            ++EPICEAKF E+S GFRP R++  AI++ M LI  + +   VD+DIKGFFDN++HT L+
Sbjct  138  VMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISHTKLI  197

Query  185  KQLWNMGIKDKRVLKLIYLILKAPI------KGFGIPKKGTPQGGILSPLLSNIVLNDLD  238
            +Q+W +GI+DK++L +I  +LKAP+      K +  P +GTPQGGILSPLL+NIVLN+LD
Sbjct  198  RQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTY--PARGTPQGGILSPLLANIVLNELD  255

Query  239  QWIASQWHYFETSYPYTNNANQK---------RAMKGTKLKQGFIVRYADDFKIMAKDFR  289
             WIASQW+   T   +   +N +         RA++ ++LK+   VRYADDFKI      
Sbjct  256  WWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCATHE  315

Query  290  TAQKWFFATKMYLKERLKLDISPEKSRIINLRKNKSEFLGYLLYVVPKRNKWVCNSRisn  349
             A + + AT + LK+RL L+ISP+KS+++NL+++ S+FLG+ L V  K +K V  S++S+
Sbjct  316  DAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHMSD  375

Query  350  kkkkqikleikkrikAIQLSSTRK----NVQLYNAYVLGLRNYFRYVTHVNIEMKQLAFN  405
            K  K+    +   +K +  SS  +    ++Q YN+ V GL++Y+   T+V+ +  +LAF+
Sbjct  376  KAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLAFS  435

Query  406  LSLVIFNRLKSVGKYEVPINAPPVFTKFFKNNYRTFK----VCGIYLFPLADIQTATIWN  461
            ++  + NRLK+    +++ ++  +   F+K++Y + +    + G  + PL+ +Q+    +
Sbjct  436  INKQLRNRLKG----DLSKKG-QLRNGFIKEKYGASRQMRFLHGRPVVPLGYVQSKNAQH  490

Query  462  YTQTQTPYNQKGR-KIAKHIELNKLVLGEIKKLLTANIPNESIEYLDNRMARYSMLNGKC  520
              ++   Y  KGR +I K++ ++    + +  L+   +   +IEY DNR++ Y+   GKC
Sbjct  491  KRKSINKYTVKGREQIHKNLAIDT---ATMLWLMRNPVKGRTIEYADNRISLYAAQYGKC  547

Query  521  EILKEFLPASELHCHHYIPKGLGGTDEYENLRIIHKEIHRLIHMTNKQTIESYFQKHSLT  580
             +    + + ++HCHH +P + GG+DEY NL ++ K +H LIH ++  TIE Y++  +L 
Sbjct  548  AVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLNLD  607

Query  581  VEQVKRINQYRRACNLEKI  599
              Q+ ++N+ R   ++  I
Sbjct  608  NKQIEKLNKLRSMAEMPPI  626

113) H175_285p103 in NC_020384


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  332 bits (1247),  Expect = 3e-92, Method: Compositional matrix adjust.
 Identities = 248/619 (41%), Positives = 397/619 (65%), Gaps = 34/619 (5%)

Query  5    MRYWEYYNMQETFDRLYEESQGNKSFHGLYELITSENNILLAYRTIKSNKGSKTAGTDLF  64
            +R  EYY+M+ TFDRLY ES+ +K+F+ L E+I SE+NI LAYRTIK N GS T+G D  
Sbjct  18   IRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDKR  77

Query  65   TIDNYKPMYKKEFLSLVCKQLEIYKPKAVKRVFIPKSNGDKRPLGIPTMFDRLIQQMIRQ  124
            TI +   +   E++ L+ KQ+  Y P +V+RV IPK+NG  RPLGIPT+ DR++QQ I Q
Sbjct  78   TIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQCILQ  137

Query  125  ILEPICEAKFYEHSYGFRPMRGTKHAISRVMFLISRNTFHYAVDIDIKGFFDNVNHTLLL  184
            ++EPICEAKF E+S GFRP R++  AI++ M LI  + +   VD+DIKGFFDN++HT L+
Sbjct  138  VMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISHTKLI  197

Query  185  KQLWNMGIKDKRVLKLIYLILKAPI------KGFGIPKKGTPQGGILSPLLSNIVLNDLD  238
            +Q+W +GI+DK++L +I  +LKAP+      K +  P +GTPQGGILSPLL+NIVLN+LD
Sbjct  198  RQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTY--PARGTPQGGILSPLLANIVLNELD  255

Query  239  QWIASQWHYFETSYPYTNNANQK---------RAMKGTKLKQGFIVRYADDFKIMAKDFR  289
             WIASQW+   T   +   +N +         RA++ ++LK+   VRYADDFKI      
Sbjct  256  WWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCATHE  315

Query  290  TAQKWFFATKMYLKERLKLDISPEKSRIINLRKNKSEFLGYLLYVVPKRNKWVCNSRisn  349
             A + + AT + LK+RL L+ISP+KS+++NL+++ S+FLG+ L V  K +K V  S++S+
Sbjct  316  DAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHMSD  375

Query  350  kkkkqikleikkrikAIQLSSTRK----NVQLYNAYVLGLRNYFRYVTHVNIEMKQLAFN  405
            K  K+    +   +K +  SS  +    ++Q YN+ V GL++Y+   T+V+ +  +LAF+
Sbjct  376  KAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLAFS  435

Query  406  LSLVIFNRLKSVGKYEVPINAPPVFTKFFKNNYRTFK----VCGIYLFPLADIQTATIWN  461
            ++  + NRLK+    +++ ++  +   F+K++Y + +    + G  + PL+ +Q+    +
Sbjct  436  INKQLRNRLKG----DLSKKG-QLRNGFIKEKYGASRQMRFLHGRPVVPLGYVQSKNAQH  490

Query  462  YTQTQTPYNQKGR-KIAKHIELNKLVLGEIKKLLTANIPNESIEYLDNRMARYSMLNGKC  520
              ++   Y  KGR +I K++ ++    + +  L+   +   +IEY DNR++ Y+   GKC
Sbjct  491  KRKSINKYTVKGREQIHKNLAIDT---ATMLWLMRNPVKGRTIEYADNRISLYAAQYGKC  547

Query  521  EILKEFLPASELHCHHYIPKGLGGTDEYENLRIIHKEIHRLIHMTNKQTIESYFQKHSLT  580
             +    + + ++HCHH +P + GG+DEY NL ++ K +H LIH ++  TIE Y++  +L 
Sbjct  548  AVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLNLD  607

Query  581  VEQVKRINQYRRACNLEKI  599
              Q+ ++N+ R   ++  I
Sbjct  608  NKQIEKLNKLRSMAEMPPI  626

114) HD73_3406 in NC_020238


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  332 bits (1247),  Expect = 3e-92, Method: Compositional matrix adjust.
 Identities = 248/619 (41%), Positives = 397/619 (65%), Gaps = 34/619 (5%)

Query  5    MRYWEYYNMQETFDRLYEESQGNKSFHGLYELITSENNILLAYRTIKSNKGSKTAGTDLF  64
            +R  EYY+M+ TFDRLY ES+ +K+F+ L E+I SE+NI LAYRTIK N GS T+G D  
Sbjct  18   IRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDKR  77

Query  65   TIDNYKPMYKKEFLSLVCKQLEIYKPKAVKRVFIPKSNGDKRPLGIPTMFDRLIQQMIRQ  124
            TI +   +   E++ L+ KQ+  Y P +V+RV IPK+NG  RPLGIPT+ DR++QQ I Q
Sbjct  78   TIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQCILQ  137

Query  125  ILEPICEAKFYEHSYGFRPMRGTKHAISRVMFLISRNTFHYAVDIDIKGFFDNVNHTLLL  184
            ++EPICEAKF E+S GFRP R++  AI++ M LI  + +   VD+DIKGFFDN++HT L+
Sbjct  138  VMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISHTKLI  197

Query  185  KQLWNMGIKDKRVLKLIYLILKAPI------KGFGIPKKGTPQGGILSPLLSNIVLNDLD  238
            +Q+W +GI+DK++L +I  +LKAP+      K +  P +GTPQGGILSPLL+NIVLN+LD
Sbjct  198  RQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTY--PARGTPQGGILSPLLANIVLNELD  255

Query  239  QWIASQWHYFETSYPYTNNANQK---------RAMKGTKLKQGFIVRYADDFKIMAKDFR  289
             WIASQW+   T   +   +N +         RA++ ++LK+   VRYADDFKI      
Sbjct  256  WWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCATHE  315

Query  290  TAQKWFFATKMYLKERLKLDISPEKSRIINLRKNKSEFLGYLLYVVPKRNKWVCNSRisn  349
             A + + AT + LK+RL L+ISP+KS+++NL+++ S+FLG+ L V  K +K V  S++S+
Sbjct  316  DAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHMSD  375

Query  350  kkkkqikleikkrikAIQLSSTRK----NVQLYNAYVLGLRNYFRYVTHVNIEMKQLAFN  405
            K  K+    +   +K +  SS  +    ++Q YN+ V GL++Y+   T+V+ +  +LAF+
Sbjct  376  KAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLAFS  435

Query  406  LSLVIFNRLKSVGKYEVPINAPPVFTKFFKNNYRTFK----VCGIYLFPLADIQTATIWN  461
            ++  + NRLK+    +++ ++  +   F+K++Y + +    + G  + PL+ +Q+    +
Sbjct  436  INKQLRNRLKG----DLSKKG-QLRNGFIKEKYGASRQMRFLHGRPVVPLGYVQSKNAQH  490

Query  462  YTQTQTPYNQKGR-KIAKHIELNKLVLGEIKKLLTANIPNESIEYLDNRMARYSMLNGKC  520
              ++   Y  KGR +I K++ ++    + +  L+   +   +IEY DNR++ Y+   GKC
Sbjct  491  KRKSINKYTVKGREQIHKNLAIDT---ATMLWLMRNPVKGRTIEYADNRISLYAAQYGKC  547

Query  521  EILKEFLPASELHCHHYIPKGLGGTDEYENLRIIHKEIHRLIHMTNKQTIESYFQKHSLT  580
             +    + + ++HCHH +P + GG+DEY NL ++ K +H LIH ++  TIE Y++  +L 
Sbjct  548  AVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLNLD  607

Query  581  VEQVKRINQYRRACNLEKI  599
              Q+ ++N+ R   ++  I
Sbjct  608  NKQIEKLNKLRSMAEMPPI  626

115) HD73_4132 in NC_020238


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  332 bits (1247),  Expect = 3e-92, Method: Compositional matrix adjust.
 Identities = 248/619 (41%), Positives = 397/619 (65%), Gaps = 34/619 (5%)

Query  5    MRYWEYYNMQETFDRLYEESQGNKSFHGLYELITSENNILLAYRTIKSNKGSKTAGTDLF  64
            +R  EYY+M+ TFDRLY ES+ +K+F+ L E+I SE+NI LAYRTIK N GS T+G D  
Sbjct  18   IRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDKR  77

Query  65   TIDNYKPMYKKEFLSLVCKQLEIYKPKAVKRVFIPKSNGDKRPLGIPTMFDRLIQQMIRQ  124
            TI +   +   E++ L+ KQ+  Y P +V+RV IPK+NG  RPLGIPT+ DR++QQ I Q
Sbjct  78   TIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQCILQ  137

Query  125  ILEPICEAKFYEHSYGFRPMRGTKHAISRVMFLISRNTFHYAVDIDIKGFFDNVNHTLLL  184
            ++EPICEAKF E+S GFRP R++  AI++ M LI  + +   VD+DIKGFFDN++HT L+
Sbjct  138  VMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISHTKLI  197

Query  185  KQLWNMGIKDKRVLKLIYLILKAPI------KGFGIPKKGTPQGGILSPLLSNIVLNDLD  238
            +Q+W +GI+DK++L +I  +LKAP+      K +  P +GTPQGGILSPLL+NIVLN+LD
Sbjct  198  RQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTY--PARGTPQGGILSPLLANIVLNELD  255

Query  239  QWIASQWHYFETSYPYTNNANQK---------RAMKGTKLKQGFIVRYADDFKIMAKDFR  289
             WIASQW+   T   +   +N +         RA++ ++LK+   VRYADDFKI      
Sbjct  256  WWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCATHE  315

Query  290  TAQKWFFATKMYLKERLKLDISPEKSRIINLRKNKSEFLGYLLYVVPKRNKWVCNSRisn  349
             A + + AT + LK+RL L+ISP+KS+++NL+++ S+FLG+ L V  K +K V  S++S+
Sbjct  316  DAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHMSD  375

Query  350  kkkkqikleikkrikAIQLSSTRK----NVQLYNAYVLGLRNYFRYVTHVNIEMKQLAFN  405
            K  K+    +   +K +  SS  +    ++Q YN+ V GL++Y+   T+V+ +  +LAF+
Sbjct  376  KAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLAFS  435

Query  406  LSLVIFNRLKSVGKYEVPINAPPVFTKFFKNNYRTFK----VCGIYLFPLADIQTATIWN  461
            ++  + NRLK+    +++ ++  +   F+K++Y + +    + G  + PL+ +Q+    +
Sbjct  436  INKQLRNRLKG----DLSKKG-QLRNGFIKEKYGASRQMRFLHGRPVVPLGYVQSKNAQH  490

Query  462  YTQTQTPYNQKGR-KIAKHIELNKLVLGEIKKLLTANIPNESIEYLDNRMARYSMLNGKC  520
              ++   Y  KGR +I K++ ++    + +  L+   +   +IEY DNR++ Y+   GKC
Sbjct  491  KRKSINKYTVKGREQIHKNLAIDT---ATMLWLMRNPVKGRTIEYADNRISLYAAQYGKC  547

Query  521  EILKEFLPASELHCHHYIPKGLGGTDEYENLRIIHKEIHRLIHMTNKQTIESYFQKHSLT  580
             +    + + ++HCHH +P + GG+DEY NL ++ K +H LIH ++  TIE Y++  +L 
Sbjct  548  AVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLNLD  607

Query  581  VEQVKRINQYRRACNLEKI  599
              Q+ ++N+ R   ++  I
Sbjct  608  NKQIEKLNKLRSMAEMPPI  626

116) HD73_7507 in NC_020240


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  332 bits (1247),  Expect = 3e-92, Method: Compositional matrix adjust.
 Identities = 248/619 (41%), Positives = 397/619 (65%), Gaps = 34/619 (5%)

Query  5    MRYWEYYNMQETFDRLYEESQGNKSFHGLYELITSENNILLAYRTIKSNKGSKTAGTDLF  64
            +R  EYY+M+ TFDRLY ES+ +K+F+ L E+I SE+NI LAYRTIK N GS T+G D  
Sbjct  18   IRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDKR  77

Query  65   TIDNYKPMYKKEFLSLVCKQLEIYKPKAVKRVFIPKSNGDKRPLGIPTMFDRLIQQMIRQ  124
            TI +   +   E++ L+ KQ+  Y P +V+RV IPK+NG  RPLGIPT+ DR++QQ I Q
Sbjct  78   TIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQCILQ  137

Query  125  ILEPICEAKFYEHSYGFRPMRGTKHAISRVMFLISRNTFHYAVDIDIKGFFDNVNHTLLL  184
            ++EPICEAKF E+S GFRP R++  AI++ M LI  + +   VD+DIKGFFDN++HT L+
Sbjct  138  VMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISHTKLI  197

Query  185  KQLWNMGIKDKRVLKLIYLILKAPI------KGFGIPKKGTPQGGILSPLLSNIVLNDLD  238
            +Q+W +GI+DK++L +I  +LKAP+      K +  P +GTPQGGILSPLL+NIVLN+LD
Sbjct  198  RQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTY--PARGTPQGGILSPLLANIVLNELD  255

Query  239  QWIASQWHYFETSYPYTNNANQK---------RAMKGTKLKQGFIVRYADDFKIMAKDFR  289
             WIASQW+   T   +   +N +         RA++ ++LK+   VRYADDFKI      
Sbjct  256  WWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCATHE  315

Query  290  TAQKWFFATKMYLKERLKLDISPEKSRIINLRKNKSEFLGYLLYVVPKRNKWVCNSRisn  349
             A + + AT + LK+RL L+ISP+KS+++NL+++ S+FLG+ L V  K +K V  S++S+
Sbjct  316  DAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHMSD  375

Query  350  kkkkqikleikkrikAIQLSSTRK----NVQLYNAYVLGLRNYFRYVTHVNIEMKQLAFN  405
            K  K+    +   +K +  SS  +    ++Q YN+ V GL++Y+   T+V+ +  +LAF+
Sbjct  376  KAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLAFS  435

Query  406  LSLVIFNRLKSVGKYEVPINAPPVFTKFFKNNYRTFK----VCGIYLFPLADIQTATIWN  461
            ++  + NRLK+    +++ ++  +   F+K++Y + +    + G  + PL+ +Q+    +
Sbjct  436  INKQLRNRLKG----DLSKKG-QLRNGFIKEKYGASRQMRFLHGRPVVPLGYVQSKNAQH  490

Query  462  YTQTQTPYNQKGR-KIAKHIELNKLVLGEIKKLLTANIPNESIEYLDNRMARYSMLNGKC  520
              ++   Y  KGR +I K++ ++    + +  L+   +   +IEY DNR++ Y+   GKC
Sbjct  491  KRKSINKYTVKGREQIHKNLAIDT---ATMLWLMRNPVKGRTIEYADNRISLYAAQYGKC  547

Query  521  EILKEFLPASELHCHHYIPKGLGGTDEYENLRIIHKEIHRLIHMTNKQTIESYFQKHSLT  580
             +    + + ++HCHH +P + GG+DEY NL ++ K +H LIH ++  TIE Y++  +L 
Sbjct  548  AVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLNLD  607

Query  581  VEQVKRINQYRRACNLEKI  599
              Q+ ++N+ R   ++  I
Sbjct  608  NKQIEKLNKLRSMAEMPPI  626

117) HD73_3932 in NC_020238


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  332 bits (1247),  Expect = 4e-92, Method: Compositional matrix adjust.
 Identities = 248/619 (41%), Positives = 397/619 (65%), Gaps = 34/619 (5%)

Query  5    MRYWEYYNMQETFDRLYEESQGNKSFHGLYELITSENNILLAYRTIKSNKGSKTAGTDLF  64
            +R  EYY+M+ TFDRLY ES+ +K+F+ L E+I SE+NI LAYRTIK N GS T+G D  
Sbjct  18   IRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSGVDKR  77

Query  65   TIDNYKPMYKKEFLSLVCKQLEIYKPKAVKRVFIPKSNGDKRPLGIPTMFDRLIQQMIRQ  124
            TI +   +   E++ L+ KQ+  Y P +V+RV IPK+NG  RPLGIPT+ DR++QQ I Q
Sbjct  78   TIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNGKTRPLGIPTIVDRIVQQCILQ  137

Query  125  ILEPICEAKFYEHSYGFRPMRGTKHAISRVMFLISRNTFHYAVDIDIKGFFDNVNHTLLL  184
            ++EPICEAKF E+S GFRP R++  AI++ M LI  + +   VD+DIKGFFDN++HT L+
Sbjct  138  VMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNISHTKLI  197

Query  185  KQLWNMGIKDKRVLKLIYLILKAPI------KGFGIPKKGTPQGGILSPLLSNIVLNDLD  238
            +Q+W +GI+DK++L +I  +LKAP+      K +  P +GTPQGGILSPLL+NIVLN+LD
Sbjct  198  RQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTY--PARGTPQGGILSPLLANIVLNELD  255

Query  239  QWIASQWHYFETSYPYTNNANQK---------RAMKGTKLKQGFIVRYADDFKIMAKDFR  289
             WIASQW+   T   +   +N +         RA++ ++LK+   VRYADDFKI      
Sbjct  256  WWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCATHE  315

Query  290  TAQKWFFATKMYLKERLKLDISPEKSRIINLRKNKSEFLGYLLYVVPKRNKWVCNSRisn  349
             A + + AT + LK+RL L+ISP+KS+++NL+++ S+FLG+ L V  K +K V  S++S+
Sbjct  316  DAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRKKGKKYVVRSHMSD  375

Query  350  kkkkqikleikkrikAIQLSSTRK----NVQLYNAYVLGLRNYFRYVTHVNIEMKQLAFN  405
            K  K+    +   +K +  SS  +    ++Q YN+ V GL++Y+   T+V+ +  +LAF+
Sbjct  376  KAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDFSRLAFS  435

Query  406  LSLVIFNRLKSVGKYEVPINAPPVFTKFFKNNYRTFK----VCGIYLFPLADIQTATIWN  461
            ++  + NRLK+    +++ ++  +   F+K++Y + +    + G  + PL+ +Q+    +
Sbjct  436  INKQLRNRLKG----DLSKKG-QLRNGFIKEKYGASRQMRFLHGRPVVPLGYVQSKNAQH  490

Query  462  YTQTQTPYNQKGR-KIAKHIELNKLVLGEIKKLLTANIPNESIEYLDNRMARYSMLNGKC  520
              ++   Y  KGR +I K++ ++    + +  L+   +   +IEY DNR++ Y+   GKC
Sbjct  491  KRKSINKYTVKGREQIHKNLAIDT---ATMLWLMRNPVKGRTIEYADNRISLYAAQYGKC  547

Query  521  EILKEFLPASELHCHHYIPKGLGGTDEYENLRIIHKEIHRLIHMTNKQTIESYFQKHSLT  580
             +    + + ++HCHH +P + GG+DEY NL ++ K +H LIH ++  TIE Y++  +L 
Sbjct  548  AVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKSLNLD  607

Query  581  VEQVKRINQYRRACNLEKI  599
              Q+ ++N+ R   ++  I
Sbjct  608  NKQIEKLNKLRSMAEMPPI  626

118) EFAU004_01851 in NC_017022


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  330 bits (1238),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 264/616 (43%), Positives = 404/616 (66%), Gaps = 30/616 (4%)

Query  3    KKNKLRYNEYYDMQHIYDELYAQSKNGNNFYKLLEIIGSEQNICLAYRNLKSNSGSKTAG  62
            K+ K+R +EYYDM+  +D LYA+SK+++ F  L+EII SE+NI LAYR +K N+GS T+G
Sbjct  14   KQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSG  73

Query  63   TDGMTIDDIKQLSNAEIVATVRESLSNYRPKSVRRVFIPKAGSDKMRPLGIPCIWDRLVQ  122
             D  TI D+ +LS+ E V  +R  +SNY+P +VRRV IPK+ + K RPLGIP I DR+VQ
Sbjct  74   VDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNG-KTRPLGIPTIVDRIVQ  132

Query  123  QCILQVLEPICEPKFHNHSYGFRANRSAHHAVSRVTTLINLSKYHYCVDVDIKGFFDNVN  182
            QCILQV+EPICE+KF ++S GFR+NRSA+ A+++   LI++      VD+DIKGFFDN++
Sbjct  133  QCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNIS  192

Query  183  HGKLLKQIWTLGIRDKRLICIISKMLKAEI---DGEGV-PEKGTPQGGllspllslivln  238
            H KL++QIW+LGIRDK+L+CII  MLKA +   +GE   P +GTPQGG+LSPLL+ IVLN
Sbjct  193  HTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLN  252

Query  239  elDWWVSSQWETFQPKNRSKN---------GWLQY-AKKYTKLKSGFIVRYADDFKIMCS  288
            ELDWW++SQWE    K + K              Y A + ++LK    VRYADDFKI C+
Sbjct  253  ELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCA  312

Query  289  TYGEAQRFYHSTVDFLNKRLKLEISPEkskvvnlkknssDFLGFKIKVIPKGRTKHGYVA  348
            T  +A R Y +T   L+ RL LEISP+KSKVVNLK++ SDFLGFK+KV         YV 
Sbjct  313  THEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRK---KGKKYVV  369

Query  349  KTDMNQkalkkaktnlklkvkDIA---RHTTGF-NISRYNLTVIGMQNYYCIATNVYNNL  404
            +++M++KA KKA  ++   VK +A    + + F ++ +YN  V G+++YYCI+T+V +++
Sbjct  370  RSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDF  429

Query  405  TEVSYALLPTIRIRLR-NIAKSVPFESTSSEFQSRTKGIRPKTKIVMIADNPLLPIQGVQ  463
            + +++++   +R RL+ +++K   +    + F     G   + ++  + + P++P+  VQ
Sbjct  430  SRLAFSINKQLRNRLKGDLSKKGQL---RNGFIKEKYGASRQMRF--LHGRPVVPLGYVQ  484

Query  464  HKNPMNFSQDICNFTKQGRNKVHEDVVVVTKEEIRALLENENPADSVEFNDNRISAYIAQ  523
             KN+ +  + I ++T +GR+++H ++ + T   ++ L+ N   + ++E+ DNRIS Y AQ
Sbjct  485  SKNAQHKRKSINKYTVKGREQIHKNLAIDTATMLW-LMRNPVKGRTIEYADNRISLYAAQ  543

Query  524  QGNCYVMNRRGTPSTLICIHK-SDKGDNLDRYSNLAFVEIPIAKAILTESADEAKSLLKG  582
             G+C V      +  + C HK +   +  D Y+NL +V  ++   I + S       LK+
Sbjct  544  YGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKS  603

Query  583  YVLNSQQKKKLNRIRT  598
              L+++Q  KLN++R+
Sbjct  604  LNLDNKQIEKLNKLRS  619

119) EFAU085_00532 in NC_021994


> NC_004668_R1|43|G43|29376827|NP_815981.1|Enterococcus_faecalis_V583|-|45794..47680|-|EF2326|group 
II intron reverse transcriptase 
maturase
Length=628

 Score =  330 bits (1238),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 264/616 (43%), Positives = 404/616 (66%), Gaps = 30/616 (4%)

Query  3    KKNKLRYNEYYDMQHIYDELYAQSKNGNNFYKLLEIIGSEQNICLAYRNLKSNSGSKTAG  62
            K+ K+R +EYYDM+  +D LYA+SK+++ F  L+EII SE+NI LAYR +K N+GS T+G
Sbjct  14   KQRKIRNSEYYDMEGTFDRLYAESKKDKTFNHLMEIIESEENIKLAYRTIKKNTGSDTSG  73

Query  63   TDGMTIDDIKQLSNAEIVATVRESLSNYRPKSVRRVFIPKAGSDKMRPLGIPCIWDRLVQ  122
             D  TI D+ +LS+ E V  +R  +SNY+P +VRRV IPK+ + K RPLGIP I DR+VQ
Sbjct  74   VDKRTIADLAKLSEEEYVRLIRKQFSNYHPGPVRRVEIPKPNG-KTRPLGIPTIVDRIVQ  132

Query  123  QCILQVLEPICEPKFHNHSYGFRANRSAHHAVSRVTTLINLSKYHYCVDVDIKGFFDNVN  182
            QCILQV+EPICE+KF ++S GFR+NRSA+ A+++   LI++      VD+DIKGFFDN++
Sbjct  133  QCILQVMEPICEAKFSENSNGFRPNRSAETAIAQCMRLIQVQHLYHVVDLDIKGFFDNIS  192

Query  183  HGKLLKQIWTLGIRDKRLICIISKMLKAEI---DGEGV-PEKGTPQGGllspllslivln  238
            H KL++QIW+LGIRDK+L+CII  MLKA +   +GE   P +GTPQGG+LSPLL+ IVLN
Sbjct  193  HTKLIRQIWALGIRDKKLLCIIKEMLKAPVVLPNGEKTYPARGTPQGGILSPLLANIVLN  252

Query  239  elDWWVSSQWETFQPKNRSKN---------GWLQY-AKKYTKLKSGFIVRYADDFKIMCS  288
            ELDWW++SQWE    K + K              Y A + ++LK    VRYADDFKI C+
Sbjct  253  ELDWWIASQWEEMPTKTKFKTRSNAQGTEIKSHAYRALRRSRLKEMHAVRYADDFKIFCA  312

Query  289  TYGEAQRFYHSTVDFLNKRLKLEISPEkskvvnlkknssDFLGFKIKVIPKGRTKHGYVA  348
            T  +A R Y +T   L+ RL LEISP+KSKVVNLK++ SDFLGFK+KV         YV 
Sbjct  313  THEDAVRAYKATELWLKDRLGLEISPDKSKVVNLKRQYSDFLGFKLKVRK---KGKKYVV  369

Query  349  KTDMNQkalkkaktnlklkvkDIA---RHTTGF-NISRYNLTVIGMQNYYCIATNVYNNL  404
            +++M++KA KKA  ++   VK +A    + + F ++ +YN  V G+++YYCI+T+V +++
Sbjct  370  RSHMSDKAYKKAHEKVSEEVKKLAYSSDDNAQFMQLQKYNSVVAGLHEYYCISTEVSHDF  429

Query  405  TEVSYALLPTIRIRLR-NIAKSVPFESTSSEFQSRTKGIRPKTKIVMIADNPLLPIQGVQ  463
            + +++++   +R RL+ +++K   +    + F     G   + ++  + + P++P+  VQ
Sbjct  430  SRLAFSINKQLRNRLKGDLSKKGQL---RNGFIKEKYGASRQMRF--LHGRPVVPLGYVQ  484

Query  464  HKNPMNFSQDICNFTKQGRNKVHEDVVVVTKEEIRALLENENPADSVEFNDNRISAYIAQ  523
             KN+ +  + I ++T +GR+++H ++ + T   ++ L+ N   + ++E+ DNRIS Y AQ
Sbjct  485  SKNAQHKRKSINKYTVKGREQIHKNLAIDTATMLW-LMRNPVKGRTIEYADNRISLYAAQ  543

Query  524  QGNCYVMNRRGTPSTLICIHK-SDKGDNLDRYSNLAFVEIPIAKAILTESADEAKSLLKG  582
             G+C V      +  + C HK +   +  D Y+NL +V  ++   I + S       LK+
Sbjct  544  YGKCAVTGIPMNSHDIHCHHKVPVSNGGSDEYANLILVSKAVHILIHASSEPTIEKYLKS  603

Query  583  YVLNSQQKKKLNRIRT  598
              L+++Q  KLN++R+
Sbjct  604  LNLDNKQIEKLNKLRS  619