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PAthogenisity Island DataBase (PAI DB)

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Homologs of yea gene of AY803022

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) NGK_1048
( YP_002001673.1 )

hypothetical protein

NC_011035
(Neisseria gonorrhoeae NCCP11945)

0.0

2) Sbal117_4769
( YP_006039768.1 )

DEAD/DEAH box helicase

NC_017580
(Shewanella baltica OS117)

0.0

3) BUPH_04990
( YP_006836210.1 )

SNF2-like protein

NC_018696
(Burkholderia phenoliruptrix BR3459a)

0.0

4) DSC_04175
( YP_004929529.1 )

plasmid-like protein

NC_016147
(Pseudoxanthomonas spadix BD-a59)

0.0

5) Bpet1323
( YP_001629928.1 )

hypothetical protein

NC_010170
(Bordetella petrii DSM 12804)

0.0

6) Aave_0540
( YP_968919.1 )

DEAD/DEAH box helicase

NC_008752
(Acidovorax citrulli AAC00-1)

0.0

7) Dd1591_0457
( YP_003002823.1 )

DEAD-like helicase

NC_012912
(Dickeya zeae Ech1591)

0.0

8) B5T_02092
( YP_006820709.1 )

helicase domain-containing protein

NC_018691
(Alcanivorax dieselolei B5)

0.0

9) PFL_4690
( YP_261773.1 )

hypothetical protein

NC_004129
(Pseudomonas protegens Pf-5)

3e-180

10) XAC29_11355
( YP_007636689.1 )

plasmid-like protein

NC_020800
(Xanthomonas axonopodis Xac29-1)

3e-180

11) G655_23610
( YP_007711558.1 )

putative helicase

NC_020912
(Pseudomonas aeruginosa B136-33)

4e-180

12) orf8
( NP_642560.1 )

plasmid-like protein

NC_003919
(Xanthomonas axonopodis 306)

7e-180

13) PSPA7_4493
( YP_001349842.1 )

DEAD/DEAH box helicase

NC_009656
(Pseudomonas aeruginosa PA7)

3e-179

14) PA14_59540
( YP_792944.1 )

hypothetical protein

NC_008463
(Pseudomonas aeruginosa UCBPP-PA14)

3e-179

15) ebA2431
( YP_158391.1 )

hypothetical protein

NC_006513
(Aromatoleum aromaticum EbN1)

4e-179

16) Tgr7_2839
( YP_002514899.1 )

DEAD/DEAH box helicase

NC_011901
(Thioalkalivibrio sulfidophilus HL-EbGR7)

7e-179

17) NCGM2_1839
( YP_005980084.1 )

hypothetical protein

NC_017549
(Pseudomonas aeruginosa NCGM2.S1)

2e-178

18) Psyr_1463
( YP_234551.1 )

DEAD/DEAH box helicase

NC_007005
(Pseudomonas syringae B728a)

5e-178

19) Bpet1064
( YP_001629667.1 )

hypothetical protein

NC_010170
(Bordetella petrii DSM 12804)

6e-178

20) Neut_0104
( YP_746357.1 )

helicase domain-containing protein

NC_008344
(Nitrosomonas eutropha C91)

2e-177

21) PSTAB_1196
( YP_004713566.1 )

plasmid-like protein

NC_015740
(Pseudomonas stutzeri ATCC 17588)

7e-177

22) TMO_c0060
( YP_006373652.1 )

helicase-like protein

NC_017958
(Tistrella mobilis KA081020-065)

7e-177

23) PSTAA_1265
( YP_005937917.1 )

Helicase conserved C-terminal domain protein

NC_017532
(Pseudomonas stutzeri DSM 4166)

1e-176

24) Alide_4011
( YP_004128604.1 )

dead-like helicase

NC_014910
(Alicycliphilus denitrificans BC)

1e-176

25) Ajs_1285
( YP_985585.1 )

helicase domain-containing protein

NC_008782
(Acidovorax sp. JS42)

9e-177

26) NH44784_009701
( YP_008028071.1 )

Superfamily II DNA/RNA helicases, SNF2 family

NC_021285
(Achromobacter xylosoxidans NH44784-1996)

2e-176

27) Rmet_2330
( YP_584476.1 )

putative plasmid-related DNA/RNA helicase

NC_007973
(Cupriavidus metallidurans CH34)

2e-176

28) PLES_26731
( YP_002440266.1 )

hypothetical protein

NC_011770
(Pseudomonas aeruginosa LESB58)

2e-176

29) Tmz1t_0972
( YP_002354634.1 )

DEAD-like helicase

NC_011662
(Thauera sp. MZ1T)

2e-176

30) BN117_0546
( YP_006894595.1 )

hypothetical protein

NC_018828
(Bordetella parapertussis Bpp5)

3e-176

31) Ajs_2220
( YP_986461.1 )

helicase domain-containing protein

NC_008782
(Acidovorax sp. JS42)

4e-176

32) NCGM2_1427
( YP_005979678.1 )

hypothetical protein

NC_017549
(Pseudomonas aeruginosa NCGM2.S1)

5e-176

33) AXYL_01085
( YP_003977144.1 )

helicase

NC_014640
(Achromobacter xylosoxidans A8)

1e-175

34) A458_06210
( YP_006456911.1 )

DEAD-like helicase

NC_018028
(Pseudomonas stutzeri CCUG 29243)

5e-175

35) Mpe_A2368
( YP_001021558.1 )

plasmid-like protein

NC_008825
(Methylibium petroleiphilum PM1)

5e-175

36) Ajs_1417
( YP_985708.1 )

helicase domain-containing protein

NC_008782
(Acidovorax sp. JS42)

7e-175

37) XCV2386
( YP_364117.1 )

helicase

NC_007508
(Xanthomonas campestris 85-10)

7e-175

38) SMD_1541
( YP_006184273.1 )

superfamily II DNA/RNA helicases, SNF2 family

NC_017671
(Stenotrophomonas maltophilia D457)

8e-175

39) NH44784_008681
( YP_008027970.1 )

Superfamily II DNA/RNA helicases, SNF2 family

NC_021285
(Achromobacter xylosoxidans NH44784-1996)

9e-175

40) Alide2_1759
( YP_004387663.1 )

DEAD/DEAH box helicase

NC_015422
(Alicycliphilus denitrificans K601)

1e-174

41) Tola_2424
( YP_002893605.1 )

helicase domain-containing protein

NC_012691
(Tolumonas auensis DSM 9187)

3e-174

42) Alide2_1905
( YP_004387799.1 )

DEAD/DEAH box helicase

NC_015422
(Alicycliphilus denitrificans K601)

1e-173

43) XCAW_01672
( YP_007649667.1 )

Hypothetical Protein

NC_020815
(Xanthomonas citri Aw12879)

9e-174

44) NH44784_010641
( YP_008028164.1 )

Superfamily II DNA/RNA helicases, SNF2 family

NC_021285
(Achromobacter xylosoxidans NH44784-1996)

6e-173

45) HEAR1996
( YP_001100264.1 )

helicase from plasmid origin

NC_009138
(Herminiimonas arsenicoxydans )

6e-173

46) Pecwa_1646
( YP_003259043.1 )

DEAD/DEAH box helicase

NC_013421
(Pectobacterium wasabiae WPP163)

5e-170

47) xccb100_2433
( YP_001903838.1 )

DNA/RNA helicase SNF2

NC_010688
(Xanthomonas campestris B100)

6e-170

48) XC_2046
( YP_243127.1 )

plasmid-like protein

NC_007086
(Xanthomonas campestris 8004)

9e-169

49) Plav_3405
( YP_001414665.1 )

helicase domain-containing protein

NC_009719
(Parvibaculum lavamentivorans DS-1)

6e-167

50) Aave_2701
( YP_971045.1 )

helicase domain-containing protein

NC_008752
(Acidovorax citrulli AAC00-1)

1e-164

51) Bpet4284
( YP_001632900.1 )

hypothetical protein

NC_010170
(Bordetella petrii DSM 12804)

2e-161

52) HDN1F_17910
( YP_003811022.1 )

hypothetical protein

NC_014366
(gamma proteobacterium HdN1)

3e-157

53) HDN1F_35270
( YP_003812739.1 )

helicase

NC_014366
(gamma proteobacterium HdN1)

3e-157

54) Bpet1476
( YP_001630081.1 )

hypothetical protein

NC_010170
(Bordetella petrii DSM 12804)

3e-149

55) Daci_4161
( YP_001565177.1 )

helicase domain-containing protein

NC_010002
(Delftia acidovorans SPH-1)

1e-143

• Sequence Alignments

1) NGK_1048 in NC_011035


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score = 1313 bits (4981),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 824/827 (99%), Positives = 826/827 (99%), Gaps = 0/827 (0%)

Query  1    MYNPVSKIDELLPDFAGLDQTVTEMQERQNQITTDFNFIIRQVAETAQKSTEAAVLPEES  60
            MYNPVSKIDELLPDFAGLDQTVTEMQERQNQITTDFNFIIRQVAETAQKSTEAAVLPEES
Sbjct  1    MYNPVSKIDELLPDFAGLDQTVTEMQERQNQITTDFNFIIRQVAETAQKSTEAAVLPEES  60

Query  61   PETELPDSDIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLEEVLDNLERPLFAAQRE  120
            PETELPDSDIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLEEVLDNLERPLFAAQRE
Sbjct  61   PETELPDSDIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLEEVLDNLERPLFAAQRE  120

Query  121  VVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVaaaaaaHQAGLHRTLVLSPPHLVYKWRR  180
            VVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLHRTLVLSPPHLVYKWRR
Sbjct  121  VVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLHRTLVLSPPHLVYKWRR  180

Query  181  EILKTVPNARVWILNGADTLAKLLQIRALGRKPEVPEFFVMGRVRMRMGYHWRPSYAVRR  240
            EILKTVPNARVWILNGADTLAKLLQIRAL+RKPEVPEFFVMGRVRMRMGYHWRPSYAVRR
Sbjct  181  EILKTVPNARVWILNGADTLAKLLQIRALDRKPEVPEFFVMGRVRMRMGYHWRPSYAVRR  240

Query  241  RRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNALAKNRRFCKGNHHGKPC  300
            RRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNALAKNRRFCKGNHHGKPC
Sbjct  241  RRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNALAKNRRFCKGNHHGKPC  300

Query  301  KEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKIIGMYGEQYLAEILENNI  360
            KEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKIIGMYGEQYLAEILENNI
Sbjct  301  KEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKIIGMYGEQYLAEILENNI  360

Query  361  QAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTEFVKRYLPKNFFGLLVVD  420
            QAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTEFVKRYLPKNFFGLLVVD
Sbjct  361  QAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTEFVKRYLPKNFFGLLVVD  420

Query  421  EGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFFLLWRLWPQMMIEDGFSY  480
            EGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFFLLWRLWPQMMIEDGFSY
Sbjct  421  EGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFFLLWRLWPQMMIEDGFSY  480

Query  481  NKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAERNSVRTAKAPGFSPLGIM  540
            NKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAERNSVRTAKAPGFSPLGIM
Sbjct  481  NKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAERNSVRTAKAPGFSPLGIM  540

Query  541  RYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKNMESVLRQHLKVALRNRDN  600
            RYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKNMESVLRQHLKVALRNRDN
Sbjct  541  RYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKNMESVLRQHLKVALRNRDN  600

Query  601  TLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEEKISPKEADMLEVVKDSLA  660
            TLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEE ISPKEADMLEVVKDSLA
Sbjct  601  TLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEEEISPKEADMLEVVKDSLA  660

Query  661  KGRKCLvytvytdtrdttgrLKEIFKRHGIKAAVMKATVKADQREDWVEDQLASGVQVVI  720
            KGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKADQREDWVEDQLASGVQVVI
Sbjct  661  KGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKADQREDWVEDQLASGVQVVI  720

Query  721  CNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQKEDVEVYFAGYSDTAQQI  780
            CNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQKEDVEVYFAGYSDTAQQI
Sbjct  721  CNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQKEDVEVYFAGYSDTAQQI  780

Query  781  CLELMGQKVAVTQSTSGDMPDSGLDILNQAEDSVEVQLAKRFVDRQD  827
            CLELMGQKVAVTQSTSGDMPDSGLDILNQAE+SVEVQLAKRFVDRQD
Sbjct  781  CLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAKRFVDRQD  827

2) BUPH_02442 in NC_018695


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  680 bits (2570),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 394/757 (53%), Positives = 565/757 (75%), Gaps = 19/757 (2%)

Query  32   IALPDFISNFGAGLLNAVRQQNPSIYDGQRPQQWDALLDALSRQPFPAQREVIHAV-TTL  90
            I+L +F+++FG +L+NAV +QN ++Y+GQ     + +LD L R  F+AQREV++AV   L
Sbjct  70   IPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLEEVLDNLERPLFAAQREVVRAVLQQL  129

Query  91   LTQHAPGGVINAEMGTGKTLMGIGVAVLLHHAGYPRTLVIAPPHLVYKWRREIKTTVPVA  150
            ++++ P+++INAEMGTGKT+M+++ A   H+AG  RTLV++PPHLVYKWRREI  TVP A
Sbjct  130  VAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLHRTLVLSPPHLVYKWRREILKTVPNA  189

Query  151  RVWILNGPDTLRKLLQLRVMRSKPAVPEFFILGRVRMRMGFDWKPAFA--RRVATLDMET  208
            RVWILNG+DTL KLLQ+R +  KP VPEFF++GRVRMRMG++W+P++A  RR    +  +
Sbjct  190  RVWILNGADTLAKLLQIRALDRKPEVPEFFVMGRVRMRMGYHWRPSYAVRRRRIPSEGAS  249

Query  209  DAITRVFACCPSCGEFVSDEDGNPL-TPTLARVALNEKRRACH-------CGERLWTLAP  260
            ++++     CP CG  + DE+ +P  T    + AL  +RR C        C E LWTL  
Sbjct  250  EGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNALAKNRRFCKGNHHGKPCKEPLWTLCR  309

Query  261  KGQGTRSMRELVKGALLQ----MPTVGEKTAERLLSRFGESMLADMLQDNLYEFINLMDD  316
            K Q+  ++   V + +L+    +P +G KTA ++++ +GE  LA++L++N+  F NLMD+
Sbjct  310  KEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKIIGMYGEQYLAEILENNIQAFSNLMDE  369

Query  317  SGELVFSDRQAKRMERALAHTEISFGQGGYQASEFIKRYLPQGYFGLLIADEGHEYKNEN  376
            +GE++F DRQA R++R L+ +E+S+G+GGYQ++EF+KRYLP+ +FGLL+ DEGHEYKN  
Sbjct  370  NGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTEFVKRYLPKNFFGLLVVDEGHEYKNYG  429

Query  377  SAQGQAMGVLARKASKtllltgtlmggYADDLYHLLYRLNPSMLIEDGFNYNGNGSMAAA  436
            +AQGQAMGVLAR  +K L LTGTLMGGYA+DL+ LL RL P M+IEDGF+YN   ++++A
Sbjct  430  TAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFFLLWRLWPQMMIEDGFSYNKGNTLGSA  489

Query  437  TMAFMREHGVLIDIHRQVD----EGSHRTAKGDRRSVSTVKGPGFGPKGIMRYVVPYTAF  492
            +MAFMR HGVL DI R+++    +G+  ++K++R SV T K+PGF+P GIMRYV+P T F
Sbjct  490  SMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAERNSVRTAKAPGFSPLGIMRYVLPITVF  549

Query  493  LKLSQIGQNVLPPYDESLLPVALTEEMAAAYRTLESTLTSELRAALRCGDKSLLGVVLNA  552
            LKL ++G+ VLP Y E + PV +TE+  A Y+ +ES L  +L+ ALR  D++L GVV++A
Sbjct  550  LKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKNMESVLRQHLKVALRNRDNTLTGVVMSA  609

Query  553  LLAWPECCFRPEIVRHPRTKRILASVPALLRDDQPGPKEEALLRLVRGELLNRRRTLVYT  612
            LL+WP+CC++P+ V   R ++IL    + + +++ +PKE  +L +V++ L + R+ LVYT
Sbjct  610  LLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEEEISPKEADMLEVVKDSLAKGRKCLVYT  669

Query  613  TYTGTRDTSVRLKNLFDAVGVRASVLRASVPAEKREDWVADQLERGAEVIITNPELVKTG  672
             YT+TRDT+ RLK++F   G++A+V++A+V A++REDWV DQL  G +V+I NPELVKTG
Sbjct  670  VYTDTRDTTGRLKEIFKRHGIKAAVMKATVKADQREDWVEDQLASGVQVVICNPELVKTG  729

Query  673  LDLLEFPTIAFLQSGFNTYTLQQAARRSWRIGQTHDVTVRFLAYEATTQMRCLKLMGQKI  732
            LDLL FPTI FLQ+G+N YTL QAARRSWRIGQ +DV V F +Y  T+Q  CL LMGQK+
Sbjct  730  LDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQKEDVEVYFAGYSDTAQQICLELMGQKV  789

Query  733  AVSQSTSGDMPESGLDILNQGGESIEVALARQLVSQE  769
            AV+QSTSGDMP+SGLDILNQ+  S+EV LA+++V ++
Sbjct  790  AVTQSTSGDMPDSGLDILNQAEGSVEVQLAKRFVDRQ  826

3) Sbal117_4769 in NC_017580


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  658 bits (2487),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 387/773 (51%), Positives = 563/773 (73%), Gaps = 25/773 (3%)

Query  9    LVTEESEVQTSKNTVSLTDFIHDFGSGLLANVENAYPARYQ-HACIDRDMVMQSLKRVPF  67
            L  E +E + + + ++LT+F+ +FG +L+  V +   + YQ ++    + V+++L R  F
Sbjct  56   LPEESPETELPDSDIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLEEVLDNLERPLF  115

Query  68   EAQAEVVQAVSSLLVDDNAPAAIINAEMGTGKTMMAIAVTAVLHAERKAHRILVLSPPHL  127
             AQ EVV+AV   LV ++ PAAIINAEMGTGKTMM++A +A  H +   HR LVLSPPHL
Sbjct  116  AAQREVVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAH-QAGLHRTLVLSPPHL  174

Query  128  VYKWRREILDTVDNAKVWILNGPDTLLSLLKIRAIATEHDGPEYFILGRVRMRMGYNWKV  187
            VYKWRREIL TV NA+VWILNG+DTL  LL+IRA+    + PE+F++GRVRMRMGY+W+ 
Sbjct  175  VYKWRREILKTVPNARVWILNGADTLAKLLQIRALDRKPEVPEFFVMGRVRMRMGYHWRP  234

Query  188  AFKIKRKRTLLSRDIDDPQYGWANHVVCPDCFSEVKDEEGYAFTPANFPQD----NQLWC  243
            ++ ++R+R  ++ +     ++  ++  CP C  E+ DEE  ++      ++    N+  C
Sbjct  235  SYAVRRRR--IPSEGASEGFA-VSEYYCPKCGCEILDEENKPYNTEGGVKNALAKNRRFC  291

Query  244  Q------QCKSPLWTLHRKR-----IDGSLDGTVKRSLMTLPTIGEATAARLIDAFGVNN  292
            +       CK PLWTL RK      + +++ + V +++ TLP IG  TAA++I+ +G + 
Sbjct  292  KGNHHGKPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKIIGMYGEQY  351

Query  293  MAEALTDNIYELVNLIDAEGEFVFNDRQAERIERKLAKTQFAFGQGDYQASEFIKRYLPK  352
            +AE L +NI  + NL+D +GEF+F+DRQA RI+R L+K++F++G+G+YQ++EF+KRYLPK
Sbjct  352  LAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTEFVKRYLPK  411

Query  353  GFFDLMVIDEAHEYKNGGSAQGQAMQVLASCTKQtllltgtlmggYAEDLFYLLWRCMPN  412
             FF+L+V+DE+HEYKN G+AQGQAM VLA C ++ L LTGTLMGGYAEDLF+LLWR  P+
Sbjct  412  NFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFFLLWRLWPQ  471

Query  413  IMMKDGYTYHNGR-LGSAAMAFSQEHGIIKEIMK----VSSEDNHKTAKGKNIRVSQTRA  467
            +M+ DG++Y++G  LGSA+MAF + HG++K+I++      S++   ++K+    V  ++A
Sbjct  472  MMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAERNSVRTAKA  531

Query  468  PGFGPLGVARYVLPYTAFLKLKDIGGNILPAYEEFFDGVDLDADMAERYSALETTLLERL  527
            PGF+PLG+ RYVLP T FLKL+D+G  +LP+Y E F  V++  D    Y  +E+ L ++L
Sbjct  532  PGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKNMESVLRQHL  591

Query  528  RKALRAGDTTLLGVVMNVLLAWPDCCFRAENVLHPRTRETLAFVPSLFDDERPTPKEERL  587
            + ALR  D TL GVVM+ LL+WPDCC+++++V   R    L    + FD+E  +PKE  +
Sbjct  592  KVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEEEISPKEADM  651

Query  588  IEMLNSNKAKGRRTLVYTAYTGKRDTATRLKSLLQPSGIKAAVMRASVKTEDREDWILEQ  647
            +E+++ + AKGR+ LVYT YT+ RDT+ RLK +++  GIKAAVM+A+VK+++REDW+ +Q
Sbjct  652  LEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKADQREDWVEDQ  711

Query  648  VDRGVDCIICNPELVKTGLDLLEFPSIIFMQTGYNVYTLMQAARRSWRIGQSDDVDVTFL  707
            +  GV+ +ICNPELVKTGLDLL FP+I F+QTGYNVYTLMQAARRSWRIGQ +DV+V F 
Sbjct  712  LASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQKEDVEVYFA  771

Query  708  GYNNTAQMTCLELMAKKIAVTQSTSGDMPDNGLDALNSDGDSIEVALAKKLLN  760
            GY++TAQ  CLELM++K+AVTQSTSGDMPD+GLD LN   +S+EV LAK++++
Sbjct  772  GYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAKRFVD  824

4) BC1001_1985 in NC_015136


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  656 bits (2480),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 394/783 (51%), Positives = 575/783 (74%), Gaps = 19/783 (2%)

Query  6    TAVIDSDIHTSTTGDDLVDGDQSRDVIALPDFIANFGAGLLDAVRQQNPSIYDGLRPQKW  65
            +   +   +++   ++  + + +   I+L +F+A+FG +L++AV +QN ++Y+G      
Sbjct  44   AETAQKSTEAAVLPEESPETELPDSDIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLL  103

Query  66   DARLDALSRRPFPAQREVIHAI-TTLLTQHAPGGVINAEMGTGKTLMGIGVAVLLHHAGY  124
            +  LD L R  F+AQREV++A+   L++++ P+++INAEMGTGKT+M+++ A   H+AG 
Sbjct  104  EEVLDNLERPLFAAQREVVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGL  163

Query  125  PRTLVIAPPHLVYKWRREIKTTVPDARVWILNGPDTLRKLLQLRVMRSKPTMPEFFILGR  184
             RTLV++PPHLVYKWRREI  TVP+ARVWILNG+DTL KLLQ+R +  KP +PEFF++GR
Sbjct  164  HRTLVLSPPHLVYKWRREILKTVPNARVWILNGADTLAKLLQIRALDRKPEVPEFFVMGR  223

Query  185  VRMRMGFDWRPAFA--RRVATLDMETDAITRVFACCPSCGEFVCDEDGNPLTLTLA-RPA  241
            VRMRMG++WRP++A  RR    +  +++++     CP CG  + DE+ +P     + + A
Sbjct  224  VRMRMGYHWRPSYAVRRRRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNA  283

Query  242  LNEKRRAC-------ACGERLWTLAPKGQGTRPTRELVKGALLQ----MPTVGEKTAERL  290
            L  +RR C       +C E LWTL  K Q+       V + +L+    +P +G KTA ++
Sbjct  284  LAKNRRFCKGNHHGKPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKI  343

Query  291  LSRFGESMLADMLQDNLYEFINLMDDSGELVFSDRQAKRMERALAHTEISFGQGGYQASE  350
            ++ +GE  LA++L++N+  F NLMD++GE++F DRQA R++R L+ +E+S+G+GGYQ++E
Sbjct  344  IGMYGEQYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTE  403

Query  351  FVKRYLPQGYFGLLIADEGHEYKNENSAQGQAMGVLARKASKtllltgtlmggYADDLYH  410
            FVKRYLP+ +FGLL+ DEGHEYKN  +AQGQAMGVLAR  +K L LTGTLMGGYA+DL+ 
Sbjct  404  FVKRYLPKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFF  463

Query  411  LLYRLNPTMLIEDGFNYNSNGSMAAATMAFMREHGVLIDIHKQVD----EGSHRTAKGDR  466
            LL RL P M+IEDGF+YN   ++++A+MAFMR HGVL DI ++++    +G+  ++K++R
Sbjct  464  LLWRLWPQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAER  523

Query  467  KSVSTVKGPGFGPKGIMRYVVPYTAFLKLSQIGQNVLPPYDESLLPVALTEEMAAAYRTL  526
            +SV T K+PGF+P GIMRYV+P T FLKL ++G+ VLP Y E + PV +TE+  A Y+ +
Sbjct  524  NSVRTAKAPGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKNM  583

Query  527  ESTLTSELRAALRCGDKSLLGVVLNALLAWPECCFRPEIVRHPRTKRILASVPALLRDGQ  586
            ES L  +L+ ALR  D++L GVV++ALL+WP+CC++P+ V   R ++IL    + + + +
Sbjct  584  ESVLRQHLKVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEEE  643

Query  587  PGPKeeellrlvrgellnrrrTLVYTTYTGTRDTSVRLKNLFDAVGVRASVLRASVSAEK  646
             +PKE ++L +V++ L + R+ LVYT YT+TRDT+ RLK++F   G++A+V++A+V A++
Sbjct  644  ISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKADQ  703

Query  647  REDWVADQLERGADVIITNPELVKTGLDLLEFPTIAFLQSGYNVYTLQQAARRSWRIGQT  706
            REDWV DQL  G +V+I NPELVKTGLDLL FPTI FLQ+GYNVYTL QAARRSWRIGQ 
Sbjct  704  REDWVEDQLASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQK  763

Query  707  LDVTVRFLGYEGTAQMRCLKLMAQKIAVSQSTSGDMPESGLDILNQGGESIEVALARQLV  766
             DV V F GY +TAQ  CL LM+QK+AV+QSTSGDMP+SGLDILNQ+  S+EV LA+++V
Sbjct  764  EDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAKRFV  823

Query  767  TQE  769
             ++
Sbjct  824  DRQ  826

5) BUPH_04990 in NC_018696


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  655 bits (2475),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 390/757 (52%), Positives = 572/757 (76%), Gaps = 19/757 (2%)

Query  28   IALPDFISNFGAGLLDAVRQQNPSIYDGQRSSRWDALLDELSRQPFPAQRQVIHAI-TTL  86
            I+L +F+++FG +L++AV +QN ++Y+GQ  +  + +LD+L R  F+AQR+V++A+   L
Sbjct  70   IPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLEEVLDNLERPLFAAQREVVRAVLQQL  129

Query  87   LTQHAPGGVINAEMGTGKTLMGIGVAVLLHHCGFPRTLVIAPPHLVYKSRREIKSTVSDA  146
            ++++ P+++INAEMGTGKT+M+++ A   H+ G+ RTLV++PPHLVYK RREI  TV++A
Sbjct  130  VAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLHRTLVLSPPHLVYKWRREILKTVPNA  189

Query  147  RVWILNGPDTLRKLLQLRVMRSRPTVPEFFILGRVRMRMGFDWKPAFA--RRVATLDMET  204
            RVWILNG+DTL KLLQ+R +  +P VPEFF++GRVRMRMG++W+P++A  RR    +  +
Sbjct  190  RVWILNGADTLAKLLQIRALDRKPEVPEFFVMGRVRMRMGYHWRPSYAVRRRRIPSEGAS  249

Query  205  DAITRVFACCPACGEFVCDEDGNPL-TPTQARPALNEKRRAC-------SCGERLWTLAP  256
            ++++     CP CG  + DE+ +P  T    + AL  +RR C       +C E LWTL  
Sbjct  250  EGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNALAKNRRFCKGNHHGKPCKEPLWTLCR  309

Query  257  KGQGTRSMRELVKGALLQ----MPTVGEKTAERLLSRFGESMLADMLQDNLYEFINLMDD  312
            K Q+  ++   V + +L+    +P +G KTA ++++ +GE  LA++L++N+  F NLMD+
Sbjct  310  KEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKIIGMYGEQYLAEILENNIQAFSNLMDE  369

Query  313  SGELVFSDRQAKRMERALAHTEISFGQGGYQASEFVKRYLPQGYFGLLIADEGHEYKNEN  372
            +GE++F DRQA R++R L+ +E+S+G+GGYQ++EFVKRYLP+ +FGLL+ DEGHEYKN  
Sbjct  370  NGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTEFVKRYLPKNFFGLLVVDEGHEYKNYG  429

Query  373  SAQGQAMGVLARKASKtllltgtlmggYADDLYHLLYRLNPAMLIEDGFNYNRNGSMAAA  432
            +AQGQAMGVLAR  +K L LTGTLMGGYA+DL+ LL RL P M+IEDGF+YN+  ++++A
Sbjct  430  TAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFFLLWRLWPQMMIEDGFSYNKGNTLGSA  489

Query  433  TMAFMREHGVLIDIHKQVD----EGSHRTAKGDRKSVSTVKGPGFGPKGIMRYVVPYTAF  488
            +MAFMR HGVL DI ++++    +G+  ++K++R+SV T K+PGF+P GIMRYV+P T F
Sbjct  490  SMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAERNSVRTAKAPGFSPLGIMRYVLPITVF  549

Query  489  LKLSQIGQNVLPPYDESLLPVALTEEMVAAYRTLESTLTSELRAALRCGDKSLLGVVLNA  548
            LKL ++G+ VLP Y E + PV +TE+  A Y+ +ES L  +L+ ALR  D++L GVV++A
Sbjct  550  LKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKNMESVLRQHLKVALRNRDNTLTGVVMSA  609

Query  549  LLAWPECCFRPEIVRHPRTKRILASVPAMLRDDQPGPKeeellrlvrgellnrrrTLVYT  608
            LL+WP+CC++P+ V   R ++IL    + + +++ +PKE ++L +V++ L + R+ LVYT
Sbjct  610  LLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEEEISPKEADMLEVVKDSLAKGRKCLVYT  669

Query  609  TYTGTRDTSVRLKNLFDAVGVRASVLRASVSAEKREDWVADQLERGADVIITNPELVKTG  668
             YT+TRDT+ RLK++F   G++A+V++A+V A++REDWV DQL  G +V+I NPELVKTG
Sbjct  670  VYTDTRDTTGRLKEIFKRHGIKAAVMKATVKADQREDWVEDQLASGVQVVICNPELVKTG  729

Query  669  LDLLEFPTIAFLQSGYNVYTLQQAARRSWRIGQTLDVTVRFLGYEGTAQMRCLKLMAQKI  728
            LDLL FPTI FLQ+GYNVYTL QAARRSWRIGQ  DV V F GY +TAQ  CL LM+QK+
Sbjct  730  LDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQKEDVEVYFAGYSDTAQQICLELMGQKV  789

Query  729  AVSQSTSGDMPESGLDILNQGGESIEVALARQLVSQE  765
            AV+QSTSGDMP+SGLDILNQ+  S+EV LA+++V ++
Sbjct  790  AVTQSTSGDMPDSGLDILNQAEGSVEVQLAKRFVDRQ  826

6) DSC_04175 in NC_016147


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  641 bits (2422),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 385/764 (51%), Positives = 545/764 (72%), Gaps = 27/764 (3%)

Query  7    DAESSPLTMSLQDFVAECGDDLLDSLNRANPPVYTGRPQAHRQLILASLKRQLFPAQADV  66
            ++E +   ++L +F+AE GD L++++   N PVY G+  +  + +L +L R LF+AQ +V
Sbjct  62   ETELPDSDIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLEEVLDNLERPLFAAQREV  121

Query  67   VHAVSELLIARGERAAIVNGEMGCGKTTVGIATAAVLNAEGYRRTLVLSPPHLVYKWRRE  126
            V+AV + L+A +  AAI+N+EMG GKT +++A+AA  +  G +RTLVLSPPHLVYKWRRE
Sbjct  122  VRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLHRTLVLSPPHLVYKWRRE  181

Query  127  IQETVAGARVWVLNGPDTLVKLMKLREQLNVPTQGPEFFVLGRVRMRMGFHWKPAFT--R  184
            I  TV+ ARVW+LNG+DTL KL+++R  L+   + PEFFV+GRVRMRMG+HW+P+++  R
Sbjct  182  ILKTVPNARVWILNGADTLAKLLQIRA-LDRKPEVPEFFVMGRVRMRMGYHWRPSYAVRR  240

Query  185  HRTPHGDVGA--------CPDCGQVITDLDGEPINP---LDLEAEEQRRKCG------QC  227
            +R P  + +         CP CG  I D +  P N    +      +RR C        C
Sbjct  241  RRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNALAKNRRFCKGNHHGKPC  300

Query  228  GSALWSLIRPKGLSASDQSSA---VQKALTRIPTIGQVTAQKLMKRFGDGFLASMLGDNI  284
              +LW+L R      +  S+    V K++T +P IG  TA K++  +G+ +LA +L +NI
Sbjct  301  KEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKIIGMYGEQYLAEILENNI  360

Query  285  HEFINLMDGNGELVFSDRQAHRMERAMANMEFGFGEGGYQPSEYIKRYLPQGTFDLLIAD  344
            + F NLMD NGE++F DRQA R++R +++ EF++G GGYQP+E++KRYLP+  F+LL+ D
Sbjct  361  QAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTEFVKRYLPKNFFGLLVVD  420

Query  345  EAHEYKNGGSAQGQAMGVLAAKARKCVLLTGTLMGGYGDDLFHLLFRALPGRMIEDGYRP  404
            E+HEYKN G+AQGQAMGVLA    K + LTGTLMGGY++DLF LL R  P  MIEDG+  
Sbjct  421  EGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFFLLWRLWPQMMIEDGFSY  480

Query  405  TKSGSMTSAAMAFMRDHGVLKDIY----SESKSTAHKTAKGSKVSVRTVKAPGFGPKGVL  460
             K+ ++ SA+MAFMR HGVLKDI     +E  + A  ++K+ + SVRT KAPGF+P G++
Sbjct  481  NKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAERNSVRTAKAPGFSPLGIM  540

Query  461  RCILPFTVFLKLKDIGGNVLPPYDEEFREVAMEADQATAYRGLSSRLTQELKQALARRDT  520
            R +LP+TVFLKL+D+G  VLP Y E FR V M  DQ + Y+ + S L Q+LK AL  RD 
Sbjct  541  RYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKNMESVLRQHLKVALRNRDN  600

Query  521  TllgvvlnvllAWPDCCFRSETVVHPRTRNTLAFVPAQFNEFEITPKERELIDVCKQEKA  580
            TL GVV++ LL+WPDCC++++ V   R  + L    +QF+E EI+PKE ++++V K+  A
Sbjct  601  TLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEEEISPKEADMLEVVKDSLA  660

Query  581  EGRKTLVYSVYTGTRDTTSRLKVLLEQEGFKVAVLRASVDASRREDWIAEQLDRGIDVLI  640
             GRK LVY+VYT+TRDTT+RLK ++ ++G+K AV++A+V A +REDW+ +QL  G++V+I
Sbjct  661  KGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKADQREDWVEDQLASGVQVVI  720

Query  641  TNPELVKTGLDLLEFPTIVFMQSGYNVYSLQQAARRSWRIGQKQPVRVIYLGYANSSQMT  700
             NPELVKTGLDLL FPTI F+Q+GYNVY+L QAARRSWRIGQK+ V V + GY++++Q  
Sbjct  721  CNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQKEDVEVYFAGYSDTAQQI  780

Query  701  CLGLMARKIMVSQSTSGDVPESGLDVLNQDGDSVEVALARQLVA  744
            CL LM++K+ V+QSTSGD+P+SGLD+LNQ  +SVEV LA+++V 
Sbjct  781  CLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAKRFVD  824

7) BTI_2186 in NC_021173


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  636 bits (2402),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 393/776 (51%), Positives = 554/776 (72%), Gaps = 32/776 (4%)

Query  4    DTLSDAPEQGDLLEAAASPLTLPLQDFVTEFGDELLEALNGANPPVYAGQPRAHRQLVLA  63
              L++ + + +L ++      +PL +F++EFGD L++A+   N PVY GQ  +  + VL 
Sbjct  54   AVLPEESPETELPDSD-----IPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLEEVLD  108

Query  64   GLKRRLFPAQADVVHAVTELLIERHERAAIVNGEMGCGKTTVGIATAAVLHAEGYRRTLV  123
             L R LF+AQ +VV+AV + L+  +  AAI+N+EMG GKT +++A+AA  H  G +RTLV
Sbjct  109  NLERPLFAAQREVVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLHRTLV  168

Query  124  LSPPHLVYKWRREILETVAGAKVWVLNGPDTLVKLMKLREALHVPAQGQEFFVLGRVRMR  183
            LSPPHLVYKWRREIL TV+ A+VW+LNG+DTL KL+++R AL+  ++  EFFV+GRVRMR
Sbjct  169  LSPPHLVYKWRREILKTVPNARVWILNGADTLAKLLQIR-ALDRKPEVPEFFVMGRVRMR  227

Query  184  MGFHWKPEF-VRRRTL------HGFIGA---CPHCGDIITDLDGEPINP---IELDAEDI  230
            MG+HW+P + VRRR +      +GF  +   CP CG  I D +  P N    +       
Sbjct  228  MGYHWRPSYAVRRRRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNALAKN  287

Query  231  RHKCA------HCASPLWTLMRPRTVSANDQSTA---VLKALKRIPTIGEVTAQKLMKQF  281
            R+ C        C  PLWTL R         ST    VLK++  +P IG  TA K++  +
Sbjct  288  RRFCKGNHHGKPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKIIGMY  347

Query  282  GDAFLASMLGDNLFEFINLMDEHGELVFSDRQAQRMERAMANMEFGFGEGGYQPSEYVKR  341
            G+ +LA +L +N+  F NLMDE+GE++F DRQA R++R +++ EF++G GGYQP+E+VKR
Sbjct  348  GEQYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTEFVKR  407

Query  342  YLPQGTFDLLIADEAHEYKNAGSAQGQAMGVLAAKTRKtllltgtlmggYADDLFHLLFR  401
            YLP+  F+LL+ DE+HEYKN G+AQGQAMGVLA    K L LTGTLMGGYA+DLF LL R
Sbjct  408  YLPKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFFLLWR  467

Query  402  SLPGRMIEDGYRPNRQGSLTSAAMAFMRDHGVLKDIY----SESTGSSHKTAKGSKITVR  457
              P  MIEDG+  N+  +L SA+MAFMR HGVLKDI     +E + ++  ++K+ + +VR
Sbjct  468  LWPQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAERNSVR  527

Query  458  TVKAPGFGPKGVLRCVLPFTVFLKLKDIGGNVLPPYDEAFRDVAMTPEQASAYRQLSGTL  517
            T KAPGF+P G++R VLP+TVFLKL+D+G  VLP Y E FR V MT +Q + Y+++ + L
Sbjct  528  TAKAPGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKNMESVL  587

Query  518  TMHLKQALAKRDTTllgvvlnvllAWPDTCFRSETVKHPRTHAMLAFTPAQFGELNVMPN  577
              HLK AL +RD TL GVV++ LL+WPD C++++ V   R + +L  T +QF+E ++ P+
Sbjct  588  RQHLKVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEEEISPK  647

Query  578  ERELIDICRQEKAAGRKTLVYSVYSGTRDTTSRLKTLLEQEGFKVAVLRASVDASRREDW  637
            E +++++ ++  A GRK LVY+VY++TRDTT+RLK ++ ++G+K AV++A+V A +REDW
Sbjct  648  EADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKADQREDW  707

Query  638  IAEQLDRGIDVLITNPDLVKTGLDLLEFPTIVFMQSGYNVYTLQQAARRSWRIGQKQPVK  697
            + +QL  G++V+I NP+LVKTGLDLL FPTI F+Q+GYNVYTL QAARRSWRIGQK+ V 
Sbjct  708  VEDQLASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQKEDVE  767

Query  698  VIYLGYAETSQMHCLALMAKKIAVSQSTSGDVPDSGLDVLNQDGDSVEVALARQLV  753
            V + GY++T+Q  CL LM++K+AV+QSTSGD+PDSGLD+LNQ  +SVEV LA+++V
Sbjct  768  VYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAKRFV  823

8) Bpet1323 in NC_010170


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  634 bits (2395),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 393/779 (51%), Positives = 545/779 (70%), Gaps = 32/779 (4%)

Query  4    DLETMPDSATQGDLLETESSPLTISLNDFVSEFGDELLDSLNRANPPVYTGQARPHRQQV  63
            +   +P+ + + +L +++     I+L +F++EFGD L++++   N PVY GQ+ P  ++V
Sbjct  52   EAAVLPEESPETELPDSD-----IPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLEEV  106

Query  64   LSRLKRLPFPAQAEVIHAVSELLIDRGERAAIINAEMGTGKTLMAIAVAAVLNAEGYRRT  123
            L  L R  F+AQ EV++AV + L+  +  AAIINAEMGTGKT+M++A AA  +  G +RT
Sbjct  107  LDNLERPLFAAQREVVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLHRT  166

Query  124  LVLSPPHLVYKWRREILETIPGAKVWVLNGPDTLVKLLKLREQLGVPATGQEFFVLGRVR  183
            LVLSPPHLVYKWRREIL T+P A+VW+LNG+DTL KLL++R  L+  +   EFFV+GRVR
Sbjct  167  LVLSPPHLVYKWRREILKTVPNARVWILNGADTLAKLLQIRA-LDRKPEVPEFFVMGRVR  225

Query  184  MRMGFHWKPVFT--RRRTPG-----GFVGA---CPHCGHVITDLDGEPINT---VELEAE  230
            MRMG+HW+P ++  RRR P+     GF  +   CP CG  I D +  P NT   V     
Sbjct  226  MRMGYHWRPSYAVRRRRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNALA  285

Query  231  ESRRKCS------QCASALWTLIRPRSLSATDQSSA---VIKALKRIPTIGEATAQRLMK  281
             +RR C        C  +LWTL R         S+    V+K++  +P IG  TA +++ 
Sbjct  286  KNRRFCKGNHHGKPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKIIG  345

Query  282  KFGESFLISLLGDNLFEFINLMDENGDLVFSDRQAQRMERAMASMEFGFGEGGYQASEFI  341
             +GE +L  +L +N+  F NLMDENG+++F DRQA R++R ++  EF++G GGYQ++EF+
Sbjct  346  MYGEQYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTEFV  405

Query  342  KRYLPQGFFDLLVCDEGHEYKGSGSAQGQAMGVLASKARRtllltgtlmggYADDLFALL  401
            KRYLP+ FF+LLV DEGHEYK  G+AQGQAMGVLA    + L LTGTLMGGYA+DLF LL
Sbjct  406  KRYLPKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFFLL  465

Query  402  FRTLTGRMIEDGYRPSRTGSMTSAAMAFMREHGVLKDIY----SESTGTAHKTARGTKIT  457
             R     MIEDG+  ++  ++ SA+MAFMR HGVLKDI     +E +  A  ++++ + +
Sbjct  466  WRLWPQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAERNS  525

Query  458  VRTVKAPGFGPKGILRCVLPFTVFLKLRDIGGNVLPPYEEEFREVAMEADQASAYRDLAG  517
            VRT KAPGF+P GI+R VLP+TVFLKLRD+G  VLP Y E FR V M  DQ + Y+++ +
Sbjct  526  VRTAKAPGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKNMES  585

Query  518  RLTAALKEALRKRDTTllgvvlnvllAWPDTCFRPETVTHPRTRELLAFTPSQFNELEIT  577
             L   LK ALR+RD TL GVV++ LL+WPD C++P+ V   R   +L  T +QF+E EI+
Sbjct  586  VLRQHLKVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEEEIS  645

Query  578  PKERELIDICKAEKAEGRKVLAYTVYTGTRDTTSRLKVLLEQEGLKVAVLRASVDTSRRE  637
            PKE +++++ K   A GRK L YTVYT+TRDTT+RLK ++ ++G+K AV++A+V + +RE
Sbjct  646  PKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKADQRE  705

Query  638  DWIAEQLDRGIDVLLTNPELVKTGLDLLEFPTIVFMQSGWNVYTLQQAARRSWRIGQKLA  697
            DW+ +QL  G++V++ NPELVKTGLDLL FPTI F+Q+G NVYTL QAARRSWRIGQK  
Sbjct  706  DWVEDQLASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQKED  765

Query  698  VKVIYLGYAATSQMTCLSLMAKKILVSQSTSGDVPESGLDALNTDGDSVEVAMARQLVA  756
            V V + GY+ T+Q  CL LM++K+ V+QSTSGD+P+SGLD LN   +SVEV +A+++V 
Sbjct  766  VEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAKRFVD  824

9) Aave_0540 in NC_008752


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  632 bits (2390),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 385/753 (52%), Positives = 534/753 (71%), Gaps = 27/753 (3%)

Query  31   TEFVAEFGDELLESLNRANPPVYAGQPRAHRERVIAGLKRRLFPAQAEVVHAAAELLIDR  90
            T+F+AEFGD L++++   N PVY GQ  +  E V+  L R LF+AQ EVV+A  + L+  
Sbjct  73   TQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLEEVLDNLERPLFAAQREVVRAVLQQLVAE  132

Query  91   GERAAFVNGEMGCGKTTVGIATAAVLHAEGYRRTLVLSPPHLVYKWRREILETVAGAKVW  150
            +  AA++N+EMG GKT +++A+AA  H  G +RTLVLSPPHLVYKWRREIL TV+ A+VW
Sbjct  133  DKPAAIINAEMGTGKTMMSVAAAAAAHQAGLHRTLVLSPPHLVYKWRREILKTVPNARVW  192

Query  151  VLNGPDTLVKLIKLREQLGVQPGGQEFFVLGRVRMRMGFHWKPTFVARRTRHGHVAA---  207
            +LNG+DTL KL+++R  L+ +P   EFFV+GRVRMRMG+HW+P++  RR R    +A   
Sbjct  193  ILNGADTLAKLLQIRA-LDRKPEVPEFFVMGRVRMRMGYHWRPSYAVRRRRIPSEGASEG  251

Query  208  -------CPDCGTVVTDLDGEPVSP---VALDAEEYRRKCG------HCATPLWTLMRPR  251
                   CP CG  + D +  P +    V       RR C        C  PLWTL R  
Sbjct  252  FAVSEYYCPKCGCEILDEENKPYNTEGGVKNALAKNRRFCKGNHHGKPCKEPLWTLCRKE  311

Query  252  TLSGSDQSSA---VLKALKRIPTIGEVTAQKLMRKFGDGFLASMLGDNIHEFINLMDGDG  308
               ++  S+    VLK++  +P IG  TA K++  +G+ +LA +L +NI+ F NLMD +G
Sbjct  312  QSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKIIGMYGEQYLAEILENNIQAFSNLMDENG  371

Query  309  ELVFSDRQaarmeramanmeFGFGEGGYQPSEFVKRYLPNGTFDLLIADEAHEYKNGGSA  368
            E++F DRQAAR++R +++ EF++G GGYQP+EFVKRYLP+  F+LL+ DE+HEYKN G+A
Sbjct  372  EFLFDDRQAARIDRDLGKAEFSLGRGGYQPTEFVKRYLPKNFFGLLVVDEGHEYKNYGTA  431

Query  369  QGQAMGVLASKCRKSLALTGTLMGGYGDDLFYLLFRALPGRMIEDGYRPSKSGSMTSAAM  428
            QGQAMGVLA  C K L LTGTLMGGY++DLF+LL R  P  MIEDG+  +K+ ++ SA+M
Sbjct  432  QGQAMGVLARCCNKILCLTGTLMGGYAEDLFFLLWRLWPQMMIEDGFSYNKGNTLGSASM  491

Query  429  AFMRDHGVLRDIY----SESAGTAHKTAKGNKVSVRTVKAPGFGPKGVLRCVVPFTIFLK  484
            AFMR HGVL+DI     +E +  A  ++K+++ SVRT KAPGF+P G++R V+P+T+FLK
Sbjct  492  AFMRKHGVLKDIVRHLGTEYSNGAFSSSKAERNSVRTAKAPGFSPLGIMRYVLPITVFLK  551

Query  485  LRDIGSDALPPYDEELREVPMapaqaaayaaLSVRLTTELRQALARRDTTLLGVVLNALL  544
            LRD+G + LP Y E +R V M+  Q A Y  +   L  +L+ AL  RD TL GVV++ALL
Sbjct  552  LRDLGEGVLPGYKEVFRPVEMTEDQQAVYKNMESVLRQHLKVALRNRDNTLTGVVMSALL  611

Query  545  AWPDTCFRAENVVHPRTRATLAFVPSQFHDMEVMPKERELIEICRQEKALGRKTLVYTTY  604
            +WPD C+++++V   R    L    +QF++ E+ PKE +++E+ ++  A GRK LVYT Y
Sbjct  612  SWPDCCYKPQDVYWRRQNKILFHTEPQFDEEEISPKEADMLEVVKDSLAKGRKCLVYTVY  671

Query  605  TGKRDTTSRLKRILELEGFKVAVLRATVDASRREDWIAEQVDRGIDVLITNPELVKTGLD  664
            T+ RDTT+RLK I+  +G+K AV++ATV A +REDW+ +Q+  G++V+I NPELVKTGLD
Sbjct  672  TDTRDTTGRLKEIFKRHGIKAAVMKATVKADQREDWVEDQLASGVQVVICNPELVKTGLD  731

Query  665  LLDFPTIVFMQSGYNVYSLQQAARRSWRIGQKQDIRVIFLGYAASSQMACLKLMAQKIMV  724
            LL FPTI F+Q+GYNVY+L QAARRSWRIGQK+D+ V F GY+ ++Q  CL LM+QK+ V
Sbjct  732  LLAFPTIYFLQTGYNVYTLMQAARRSWRIGQKEDVEVYFAGYSDTAQQICLELMGQKVAV  791

Query  725  AQSTSGDIPESGLDVLNQDGDSVEVALARQLVA  757
            +QSTSGD+P+SGLD+LNQ  +SVEV LA+++V 
Sbjct  792  TQSTSGDMPDSGLDILNQAEGSVEVQLAKRFVD  824

10) Dd1591_0457 in NC_012912


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  631 bits (2384),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 379/760 (50%), Positives = 539/760 (71%), Gaps = 28/760 (3%)

Query  26   AELAISLQDFVSEFGDELLDSLNRANPPVYNGVPRANRQRILANLKRQLFPaqaevvhaa  85
            ++  I+L +F++EFGD L++++   N PVY+G   +  + +L NL R LF+AQ EVV+A 
Sbjct  66   PDSDIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLEEVLDNLERPLFAAQREVVRAV  125

Query  86   aellvNQGERSAIVNGEMGTGKTTVGIALAAVLNAEGYRRTLVLSPPHLVYKWRREILET  145
             + LV ++  +AI+N+EMGTGKT +++A AA  +  G +RTLVLSPPHLVYKWRREIL T
Sbjct  126  LQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLHRTLVLSPPHLVYKWRREILKT  185

Query  146  VTGARVWVLNGPDTLLKLIKLREQLNVPADGQEFFIIGRVRMRMGFHWRPAFVRKRTRHG  205
            V  ARVW+LNG+DTL KL+++R  L+  ++  EFF++GRVRMRMG+HWRP++  +R R  
Sbjct  186  VPNARVWILNGADTLAKLLQIRA-LDRKPEVPEFFVMGRVRMRMGYHWRPSYAVRRRRIP  244

Query  206  TVG----------LCPHCGTMINTLDGEP---VSALELDAEEVRRKCG------FCKSAL  246
            + G           CP CG  I   +  P    +++       RR C        CK +L
Sbjct  245  SEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNALAKNRRFCKGNHHGKPCKEPL  304

Query  247  WTLMRPRSVSGSDQSAA---VLRALKRIPTIGEATAAKLMKTFGDSFLASMLGDNFHQFI  303
            WTL R     ++  S+    VL+++  +P IG  TAAK++  +G+ +LA +L +N++ F 
Sbjct  305  WTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKIIGMYGEQYLAEILENNIQAFS  364

Query  304  NLMDNRGELVFSDRQAQRMERAMSSMEFGFGEGGYQPSEFVKRYLPQSTFDLLIADEAHE  363
            NLMD+ GE++F DRQA R++R ++  EF++G GGYQP+EFVKRYLP++ F+LL+ DE+HE
Sbjct  365  NLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTEFVKRYLPKNFFGLLVVDEGHE  424

Query  364  YKTGGSAQGQAMGVIAAKTRKTLQLTGTLMGGYASDLFYLLFRALPERMIEDGYRPSTRG  423
            YK  G+AQGQAMGV+A    K L LTGTLMGGYA DLF+LL R  P+ MIEDG+  +   
Sbjct  425  YKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFFLLWRLWPQMMIEDGFSYNKGN  484

Query  424  SMNAAAMAFMRDHGVLKDIY----SESDGPSHKTAKGSKITVRTVKAPGFGPKGVLRCVL  479
            ++ +A+MAFMR HGVLKDI     +E    +  ++K+ + +VRT KAPGF+P G++R VL
Sbjct  485  TLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAERNSVRTAKAPGFSPLGIMRYVL  544

Query  480  PFTIFLKLRDIG-GVLPPYDEEFREVEMEAEQSDTYSKLAASLTTQLKEALRKRDTTllg  538
            P+T+FLKLRD+G GVLP Y E FR VEM  +Q   Y ++ + L  +LK ALR+RD TL G
Sbjct  545  PITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKNMESVLRQHLKVALRNRDNTLTG  604

Query  539  vvlnvllAWSDCCFRTETVRHPRTREVLAFIPAQFNELQVMPKEQELIDICKQEKAEGRK  598
            VV++ LL+W+DCC++ + V   R   +L    +QF+E ++ PKE +++++ K+  A GRK
Sbjct  605  VVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEEEISPKEADMLEVVKDSLAKGRK  664

Query  599  TLVYSVYTGTRDTTSRLKMLLEQEGFKVAVLRASVDASRREDWIAEQLDRGIDVLITNPE  658
             LVY+VYT+TRDTT+RLK ++ ++G+K AV++A+V A +REDW+ +QL  G++V+I NPE
Sbjct  665  CLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKADQREDWVEDQLASGVQVVICNPE  724

Query  659  LVKTGLDLLEFPTIVFMQSGYNVYTLQQAARRSWRIGQTQPVKVIYLGYAATSQMTCLAL  718
            LVKTGLDLL FPTI F+Q+GYNVYTL QAARRSWRIGQ + V V + GY+ T+Q  CL L
Sbjct  725  LVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQKEDVEVYFAGYSDTAQQICLEL  784

Query  719  MAKKILVSQSTSGDVPESGLDVLNQDGDSIEVALARQLVA  758
            M++K+ V+QSTSGD+P+SGLD+LNQ  +S+EV LA+++V 
Sbjct  785  MGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAKRFVD  824

11) B5T_02092 in NC_018691


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  627 bits (2370),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 397/756 (53%), Positives = 549/756 (73%), Gaps = 29/756 (3%)

Query  25   VGLSDFVEEFGDELLAALNQANPPVFDGQPRQEREQVLDGLSRTLFLAQARTVHAVTELL  84
            + L++F+ EFGD L+ A+ + N PV++GQ     E+VLD L R LF AQ   V+AV + L
Sbjct  70   IPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLEEVLDNLERPLFAAQREVVRAVLQQL  129

Query  85   INRGEPAAIVNGEMGCGKTTVGIATAAVLHRTAGYRRTLVLSPPHLVYKWRREILETIPD  144
            +  + PAAI+N+EMG GKT +++A+AA  H+ AG +RTLVLSPPHLVYKWRREIL T+P+
Sbjct  130  VAEDKPAAIINAEMGTGKTMMSVAAAAAAHQ-AGLHRTLVLSPPHLVYKWRREILKTVPN  188

Query  145  ARVWVLNGPDTLSKLLKLRETLGSPVEGPEFFVLGRVRMRMGFHWQPAFQRRRRQHGEEA  204
            ARVW+LNG+DTL+KLL++R +L+   E PEFFV+GRVRMRMG+HW+P++  RRR+   E+
Sbjct  189  ARVWILNGADTLAKLLQIR-ALDRKPEVPEFFVMGRVRMRMGYHWRPSYAVRRRRIPSEG  247

Query  205  V----------CPDCGRTLTDPDGEPIRP--AVLDA-EDTRRKCDG------CGTPLWTL  245
                       CP CG  + D +  P     +V +A    RR C G      C  PLWTL
Sbjct  248  ASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNALAKNRRFCKGNHHGKPCKEPLWTL  307

Query  246  VRPKGLSATDRSAA---VIKALKRIPTIGEVTARRLMKTFGEAFLASMLGDNLYEFINLM  302
             R         S+    V+K++  +P IG  TA +++  +GE +LA +L +N+  F NLM
Sbjct  308  CRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKIIGMYGEQYLAEILENNIQAFSNLM  367

Query  303  DANGQLVFSDRQAQRMERAMANMEFGFGEGGFQPSEFIKRQLPQNTFDLLIADEAHEYKN  362
            D NG+++F DRQA R++R +++ EF++G GG+QP+EF+KR LP+N F+LL+ DE+HEYKN
Sbjct  368  DENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTEFVKRYLPKNFFGLLVVDEGHEYKN  427

Query  363  RGSAQGQAMGvlaakarkvlllTGTLMGGYADDlffllfRALPSRMIEDGYRPTQRGSLS  422
             G+AQGQAMGVLA    K+L LTGTLMGGYA+DLFFLL R  P  MIEDG+   +  +L+
Sbjct  428  YGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFFLLWRLWPQMMIEDGFSYNKGNTLG  487

Query  423  SAAMAFMRDHGVLKDIY----SESTSAAHKTAKGNKVTVRTTKAPGFGPNGVLRYVLPFT  478
            SA+MAFMR HGVLKDI     +E +++A  ++K+++ +VRT+KAPGF+P G++RYVLP+T
Sbjct  488  SASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAERNSVRTAKAPGFSPLGIMRYVLPIT  547

Query  479  VFLKLRDIG-GVLPPYDEAFRDVAMTEEQERVHQTLACQLTAELKRALSRRDTTllgvvl  537
            VFLKLRD+G GVLP Y E FR V MTE+Q+ V + +   L  +LK AL  RD TL GVV+
Sbjct  548  VFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKNMESVLRQHLKVALRNRDNTLTGVVM  607

Query  538  nvllAWPDTCFRAETVKHPQTREPLAFVPAQFSDTDVMPKEAELVEICREAKAEGRNTLV  597
            + LL+WPD C++++ V   +    L    +QF + ++ PKEA+++E+ +++ A GR+ LV
Sbjct  608  SALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEEEISPKEADMLEVVKDSLAKGRKCLV  667

Query  598  YTVYTGHRDTTARLKGILERDGFKVAVLRASVDAARREDWIADQLERGIDVLITNPELVK  657
            YTVYT+ RDTT+RLK I+ R+G+K AV++A+V A +REDW+ DQL  G++V+I NPELVK
Sbjct  668  YTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKADQREDWVEDQLASGVQVVICNPELVK  727

Query  658  TGLDLLAFPTIVFMQSGYNVYSLQQAARRSWRIGQTQPVRVIYLGYARTSQMTCLGLMAK  717
            TGLDLLAFPTI F+Q+GYNVY+L QAARRSWRIGQ + V V + GY+ T+Q  CL LM++
Sbjct  728  TGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQKEDVEVYFAGYSDTAQQICLELMGQ  787

Query  718  KITVAQSTSGDVPESGLDVLNQDSDSVEVALAKQLV  753
            K++V+QSTSGD+P+SGLD+LNQ  +SVEV LAK++V
Sbjct  788  KVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAKRFV  823

12) PFL_4690 in NC_004129


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  625 bits (2361),  Expect = 3e-180, Method: Compositional matrix adjust.
 Identities = 390/758 (52%), Positives = 545/758 (72%), Gaps = 27/758 (3%)

Query  16   NINLTDFIDEFGDELLESLNRSNPPVYTGVAHEQRQAVMDNLKRKPFaaqadvvqasaal  75
            +I LT+F+ EFGD L++++   N PVY G +    + V+DNL R  FAAQ +VV+A    
Sbjct  69   DIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLEEVLDNLERPLFAAQREVVRAVLQQ  128

Query  76   lldRNEQAAIINAEMGTGKTMMAIAVAAIMHSAGYRRTLVISPPHLVYKWRREILETIPD  135
            L+  +  AAIINAEMGTGKTMM++A AA  H AG +RTLV+SPPHLVYKWRREIL T+P+
Sbjct  129  LVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLHRTLVLSPPHLVYKWRREILKTVPN  188

Query  136  ARVWVLNGPDTLIKLLKLRDQLGLTYDGRQEFFILGRVRMRMGFHWRLACSKRR-----A  190
            ARVW+LNG+DTL KLL++R  L+       EFF++GRVRMRMG+HWR + + RR      
Sbjct  189  ARVWILNGADTLAKLLQIRA-LDRK-PEVPEFFVMGRVRMRMGYHWRPSYAVRRRRIPSE  246

Query  191  SGGQQLAA----CPDCG-RVLEDLEGNLITVDEFERG--DRRRNCNA------CNAALWT  237
            ++++ +A     CP CG  +L++ +    T +    +    RR C++      C+ +LWT
Sbjct  247  GASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNALAKNRRFCKGNHHGKPCKEPLWT  306

Query  238  LMRPGKADGGDRRST---ILKSMCRIPTIGPVRAERLLNDFGEDFLASMLVDNVSEFINL  294
            L R  ++++G   +    +LK+M  +P IGP  A +++  +GE++LA +L +N+  F NL
Sbjct  307  LCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKIIGMYGEQYLAEILENNIQAFSNL  366

Query  295  MDTKGNFIFSDRQAKRMERAMANIEFGFGEGGYQPTEFIKRYLPDGFFDLLVVDEGHEYK  354
            MD +G+F+F DRQA R++R +++ EF++G GGYQPTEF+KRYLP  FF+LLVVDEGHEYK
Sbjct  367  MDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTEFVKRYLPKNFFGLLVVDEGHEYK  426

Query  355  NSGSAQGQAMGVLAAKARKTVLLTGTLMGGYADDLFYLLFRILTRQMIEDGYRPNARGSM  414
            N G+AQGQAMGVLA    K + LTGTLMGGYA+DLF+LL R+  + MIEDG+  N   ++
Sbjct  427  NYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFFLLWRLWPQMMIEDGFSYNKGNTL  486

Query  415  APAAMAFMRDHGVLKDIY----TERDGDSHKTAKGKKFSVRTVKAPGFGPKGIHRFVLPF  470
            ++A+MAFMR HGVLKDI     TE   ++  ++K+ + SVRT KAPGF+P GI R+VLP+
Sbjct  487  GSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAERNSVRTAKAPGFSPLGIMRYVLPI  546

Query  471  TVFLKLKDIGGNILPTYNEEFIDVPMAPGQASAYQSLASKLTAELRQALARRDTTllgvv  530
            TVFLKL+D+G  +LP Y+E F  V M+ +Q + Y+++ S L  +L+ AL  RD TL GVV
Sbjct  547  TVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKNMESVLRQHLKVALRNRDNTLTGVV  606

Query  531  lnvllAWPDCCFRSEIVKHPRTRGTLAFVPAIFNEEQLMPKEQALLSLCIEEKAKGRKVL  590
            ++ LL+WPDCC++++ V   R    L    + F+EE++ PKE  +L +  +  AKGRK L
Sbjct  607  MSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEEEISPKEADMLEVVKDSLAKGRKCL  666

Query  591  AYTVYSGTRDTTCRLKKVLEQAGLKVAVLRASVDTSRREDWILDQVDRGIDVLITNPELV  650
             YTVY++TRDTT RLK ++ + G+K AV++A+V + +REDW+ DQ+  G++V+I NPELV
Sbjct  667  VYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKADQREDWVEDQLASGVQVVICNPELV  726

Query  651  KTGLDLLDFPTIVFLQTGYNVYTLQQAARRSWRIGQKHPVRVIFLGYAGSSQITCLQLMA  710
            KTGLDLL FPTI FLQTGYNVYTL QAARRSWRIGQK+ V V F GY++++Q  CL+LM+
Sbjct  727  KTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQKEDVEVYFAGYSDTAQQICLELMG  786

Query  711  KKIAVAQSTSGDVPESGLDSLNQDGDSVEMALARQLIA  748
            +K+AV+QSTSGD+P+SGLD LNQ  +SVE+ LA++++ 
Sbjct  787  QKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAKRFVD  824

13) XAC29_11355 in NC_020800


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  625 bits (2361),  Expect = 3e-180, Method: Compositional matrix adjust.
 Identities = 387/778 (50%), Positives = 544/778 (70%), Gaps = 27/778 (3%)

Query  6    DTAADNAPVQGDLLGAEPSPLELSLTEFVAEFGDELLESLNRANPPVYSGQPRAHRQRIV  65
            + +++ A +  +   +E +  +++LT+F+AEFGD L++++   N PVY GQ  +  + ++
Sbjct  48   QKSTEAAVLPEESPETELPDSDIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLEEVL  107

Query  66   AGLKRRLFPAQAEVVHAAAELLIDRGERAAIVNGEMGCGKTTVGIATAAVLHAEGYRRTL  125
              L R LF+AQ EVV+A  + L+  +  AAI+N+EMG GKT +++A+AA  H  G +RTL
Sbjct  108  DNLERPLFAAQREVVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLHRTL  167

Query  126  VLSPPHLVYKWRREILETVAGARVWVLNGPDTLVKLIKLREQLGERPTGQEFFVLGRVRM  185
            VLSPPHLVYKWRREIL TV+ ARVW+LNG+DTL KL+++R  L+ +P   EFFV+GRVRM
Sbjct  168  VLSPPHLVYKWRREILKTVPNARVWILNGADTLAKLLQIRA-LDRKPEVPEFFVMGRVRM  226

Query  186  RMGFHWKPVCAVRRTRHGDVAT----------CPDCGHVVTDLDGEPVHPA---MLDEDE  232
            RMG+HW+P  AVRR R    ++          CP CG  + D +  P +           
Sbjct  227  RMGYHWRPSYAVRRRRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNALAK  286

Query  233  HRRKCG------HCAAPLWTLMRPESLSGNAQSSA---VAKALQRIPTIGEATAQKLMRK  283
            +RR C        C  PLWTL R E   +   S+    V K++  +P IG  TA K++  
Sbjct  287  NRRFCKGNHHGKPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKIIGM  346

Query  284  FGDGFLASMLGDNIHEFINLMDANGELVFSDRQATRMERAMANMEFGFGEGGYQPTEFIK  343
            +G+ +LA +L +NI+ F NLMD NGE++F DRQA+R++R +++ EF++G GGYQPTEF+K
Sbjct  347  YGEQYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTEFVK  406

Query  344  RYLPQGTFDLLIPDEAHEYKNGGSAQGQAMGVLAAKCRKAllltgtlmggygddlFYLLF  403
            RYLP+  F+LL+ DE+HEYKN G+AQGQAMGVLA  C K L LTGTLMGGY++DLF+LL 
Sbjct  407  RYLPKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFFLLW  466

Query  404  RALPGRMIEDGYRPAKNGSMTSAAMAFMRDHGVLKDIY----SESAGTAHKTAKGSKTSV  459
            R  P  MIEDG+   K  ++ SA+MAFMR HGVLKDI     +E +  A  ++K+ + SV
Sbjct  467  RLWPQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAERNSV  526

Query  460  RTVKAPGFGPKGVLRCVLPFTIFLKLRDLGRDVLPPYDEEFREVPMAPAQASAYSALSIA  519
            RT KAPGF+P G++R VLP+T+FLKLRDLG +VLP Y E FR V M+  Q + Y  +   
Sbjct  527  RTAKAPGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKNMESV  586

Query  520  LTSALRQALARRDTTllgvvlnvllAWPDTCFRAENVVHPRTRDTLAFVPAQFHDAQAMP  579
            L   L+ AL  RD TL GVV++ LL+WPD C+++++V   R    L    +QF++ +  P
Sbjct  587  LRQHLKVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEEEISP  646

Query  580  KERELIDICRQEKAQGRKTLVYTVYTGTRDTTSRLKRLLEVEGFKVAVLRASVDASRRED  639
            KE +++++ ++  A+GRK LVYTVYT+TRDTT+RLK ++  +G+K AV++A+V A +RED
Sbjct  647  KEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKADQRED  706

Query  640  WIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYSLQQAARRSWRIGQTQCI  699
            W+ +QL  G++V+I NPELVKTGLDLL FPTI F+Q+GYNVY+L QAARRSWRIGQ + +
Sbjct  707  WVEDQLASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQKEDV  766

Query  700  KVIYLGYAASSQMSCLKLMAQKIMVAQSTSGDIPESGLDVLNQDGDSVEVALARQLVN  757
             V + GY+ ++Q  CL LM+QK+ V+QSTSGD+P+SGLD+LNQ  +SVEV LA+++V+
Sbjct  767  EVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAKRFVD  824

14) G655_23610 in NC_020912


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  624 bits (2359),  Expect = 4e-180, Method: Compositional matrix adjust.
 Identities = 384/760 (51%), Positives = 544/760 (72%), Gaps = 31/760 (4%)

Query  16   NINLTDFIDEFGDELLESLNRSNPPVYTGSDNAHRQLVMDRLKRKPFAAQAEVVQAITAL  75
            +I LT+F+ EFGD L++++   N PVY G   +  + V+D L R  FAAQ EVV+A+   
Sbjct  69   DIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLEEVLDNLERPLFAAQREVVRAVLQQ  128

Query  76   LLDRNEQAGIINAEMGTGKTmmaiavaavmhaaGYRRTLVVSPPHLVYKWRREILETIPA  135
            L+  +  A+IINAEMGTGKTMM++A AA  H AG +RTLV+SPPHLVYKWRREIL T+P 
Sbjct  129  LVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLHRTLVLSPPHLVYKWRREILKTVPN  188

Query  136  ARVWVLNGPDTLLKLLKLR--DQMGDAYDGRQEFFILGRVRMRMGFHWRLAC--WKKRAA  191
            ARVW+LNG+DTL KLL++R  D+  +      EFF++GRVRMRMG+HWR +   +++R +
Sbjct  189  ARVWILNGADTLAKLLQIRALDRKPEV----PEFFVMGRVRMRMGYHWRPSYAVRRRRIP  244

Query  192  GGQLLAA-------CPDCG-QVLEDLEGNLVTVEEFERG--DRRRTCSS------CRGAL  235
            +     +       CP CG ++L++ +    T      +    RR C +      C+ +L
Sbjct  245  SEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNALAKNRRFCKGNHHGKPCKEPL  304

Query  236  WTLIRPGKPDGGNRRAT---ILKSMCRIPTIGPVRAERLLNDFGEDFLATMLVDNVSEFI  292
            WTL R  ++++G   +    +LK+M  +P IGP  A +++  +GE++LA +L +N+  F 
Sbjct  305  WTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKIIGMYGEQYLAEILENNIQAFS  364

Query  293  NLMDAKGNFVFSDRQAKRMERSMANIEFGFGEGGYQPTEFIKRYLPDGYFDLLVVDEGHE  352
            NLMD +G+F+F DRQA R++R +++ EF++G GGYQPTEF+KRYLP  +F+LLVVDEGHE
Sbjct  365  NLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTEFVKRYLPKNFFGLLVVDEGHE  424

Query  353  YKNSGSAQGQAMGVLAAKARKTVLLTGTLMGGYADDLFYLLFRILTQRMIEDGYRPNARG  412
            YKN G+AQGQAMGVLA    K + LTGTLMGGYA+DLF+LL R+  Q MIEDG+  N   
Sbjct  425  YKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFFLLWRLWPQMMIEDGFSYNKGN  484

Query  413  SMAPAAMSFMRDHGVLKDIY----TERDGDSHKTARGKKLSVRTVKAPGFGPKGIHRFVL  468
            ++++A+M+FMR HGVLKDI     TE   ++  ++++ + SVRT KAPGF+P GI R+VL
Sbjct  485  TLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAERNSVRTAKAPGFSPLGIMRYVL  544

Query  469  PFTVFLKLKDIGGNVLPDYQEEFVDVPMAPEQASAYQRLAATLTAELRQALARRDTTllg  528
            P+TVFLKL+D+G  VLP+Y+E F  V M+ +Q + Y+ + + L  +L+ AL  RD TL G
Sbjct  545  PITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKNMESVLRQHLKVALRNRDNTLTG  604

Query  529  vvlnvllAWPDCCFRPEIVKHPRTRDTLAFVPAIFGDEQLMPKEQALVDLCLEEKAKGRK  588
            VV++ LL+WPDCC++P+ V   R    L    + F++E++ PKE  ++++  +  AKGRK
Sbjct  605  VVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEEEISPKEADMLEVVKDSLAKGRK  664

Query  589  VLAYTVYSGTRDTTSRLKKVLEQSGLKVAVLRASVDTARREDWILDQVDRGIDVLITNPE  648
             L YTVY++TRDTT+RLK ++ + G+K AV++A+V + +REDW+ DQ+  G++V+I NPE
Sbjct  665  CLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKADQREDWVEDQLASGVQVVICNPE  724

Query  649  LVKTGLDLLDFPTIAFLQTGYNVYTLQQAARRSWRIGQKHPVRVVFFGYAGSSQITCLQL  708
            LVKTGLDLL FPTI FLQTGYNVYTL QAARRSWRIGQK+ V V F GY++++Q  CL+L
Sbjct  725  LVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQKEDVEVYFAGYSDTAQQICLEL  784

Query  709  MAKKIAVAQSTSGDVPESGLDSLNQDGDSVEMALARQLIA  748
            M++K+AV+QSTSGD+P+SGLD LNQ  +SVE+ LA++++ 
Sbjct  785  MGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAKRFVD  824

15) orf8 in NC_003919


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  623 bits (2356),  Expect = 7e-180, Method: Compositional matrix adjust.
 Identities = 387/778 (50%), Positives = 544/778 (70%), Gaps = 27/778 (3%)

Query  15   DTAADNAPVQGDLLGAEPSPLELSLTEFVAEFGDELLESLNRANPPVYSGQPRAHRQRIV  74
            + +++ A +  +   +E +  +++LT+F+AEFGD L++++   N PVY GQ  +  + ++
Sbjct  48   QKSTEAAVLPEESPETELPDSDIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLEEVL  107

Query  75   AGLKRRLFPAQAEVVHAAAELLIDRGERAAIVNGEMGCGKTTVGIATAAVLHAEGYRRTL  134
              L R LF+AQ EVV+A  + L+  +  AAI+N+EMG GKT +++A+AA  H  G +RTL
Sbjct  108  DNLERPLFAAQREVVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLHRTL  167

Query  135  VLSPPHLVYKWRREILETVAGARVWVLNGPDTLVKLIKLREQLGERPTGQEFFVLGRVRM  194
            VLSPPHLVYKWRREIL TV+ ARVW+LNG+DTL KL+++R  L+ +P   EFFV+GRVRM
Sbjct  168  VLSPPHLVYKWRREILKTVPNARVWILNGADTLAKLLQIRA-LDRKPEVPEFFVMGRVRM  226

Query  195  RMGFHWKPVCAVRRTRHGDVAT----------CPDCGHVVTDLDGEPVHPA---MLDEDE  241
            RMG+HW+P  AVRR R    ++          CP CG  + D +  P +           
Sbjct  227  RMGYHWRPSYAVRRRRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNALAK  286

Query  242  HRRKCG------HCAAPLWTLMRPESLSGNAQSSA---VAKALQRIPTIGEATAQKLMRK  292
            +RR C        C  PLWTL R E   +   S+    V K++  +P IG  TA K++  
Sbjct  287  NRRFCKGNHHGKPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKIIGM  346

Query  293  FGDGFLASMLGDNIHEFINLMDANGELVFSDRQATRMERAMANMEFGFGEGGYQPTEFIK  352
            +G+ +LA +L +NI+ F NLMD NGE++F DRQA+R++R +++ EF++G GGYQPTEF+K
Sbjct  347  YGEQYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTEFVK  406

Query  353  RYLPQGTFDLLIPDEAHEYKNGGSAQGQAMGVLAAKCRKAllltgtlmggygddlFYLLF  412
            RYLP+  F+LL+ DE+HEYKN G+AQGQAMGVLA  C K L LTGTLMGGY++DLF+LL 
Sbjct  407  RYLPKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFFLLW  466

Query  413  RALPGRMIEDGYRPAKNGSMTSAAMAFMRDHGVLKDIY----SESAGTAHKTAKGSKTSV  468
            R  P  MIEDG+   K  ++ SA+MAFMR HGVLKDI     +E +  A  ++K+ + SV
Sbjct  467  RLWPQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAERNSV  526

Query  469  RTVKAPGFGPKGVLRCVLPFTIFLKLRDLGRDVLPPYDEEFREVPMAPAQASAYSALSIA  528
            RT KAPGF+P G++R VLP+T+FLKLRDLG +VLP Y E FR V M+  Q + Y  +   
Sbjct  527  RTAKAPGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKNMESV  586

Query  529  LTSALRQALARRDTTllgvvlnvllAWPDTCFRAENVVHPRTRDTLAFVPAQFHDAQAMP  588
            L   L+ AL  RD TL GVV++ LL+WPD C+++++V   R    L    +QF++ +  P
Sbjct  587  LRQHLKVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEEEISP  646

Query  589  KERELIDICRQEKAQGRKTLVYTVYTGTRDTTSRLKRLLEVEGFKVAVLRASVDASRRED  648
            KE +++++ ++  A+GRK LVYTVYT+TRDTT+RLK ++  +G+K AV++A+V A +RED
Sbjct  647  KEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKADQRED  706

Query  649  WIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYSLQQAARRSWRIGQTQCI  708
            W+ +QL  G++V+I NPELVKTGLDLL FPTI F+Q+GYNVY+L QAARRSWRIGQ + +
Sbjct  707  WVEDQLASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQKEDV  766

Query  709  KVIYLGYAASSQMSCLKLMAQKIMVAQSTSGDIPESGLDVLNQDGDSVEVALARQLVN  766
             V + GY+ ++Q  CL LM+QK+ V+QSTSGD+P+SGLD+LNQ  +SVEV LA+++V+
Sbjct  767  EVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAKRFVD  824

16) PSPA7_4493 in NC_009656


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  621 bits (2348),  Expect = 3e-179, Method: Compositional matrix adjust.
 Identities = 384/760 (51%), Positives = 544/760 (72%), Gaps = 31/760 (4%)

Query  16   NINLTDFIDEFGDELLESLNRSNPPVYTGSDNAHRQLVMDRLKRKPFAAQAEVVQAITAL  75
            +I LT+F+ EFGD L++++   N PVY G   +  + V+D L R  FAAQ EVV+A+   
Sbjct  69   DIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLEEVLDNLERPLFAAQREVVRAVLQQ  128

Query  76   LLDRNEQAGIINAEMGTGKTmmaiavaavmhaaGYRRTLVVSPPHLVYKWRREILETIPA  135
            L+  +  A+IINAEMGTGKTMM++A AA  H AG +RTLV+SPPHLVYKWRREIL T+P 
Sbjct  129  LVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLHRTLVLSPPHLVYKWRREILKTVPN  188

Query  136  ARVWVLNGPDTLLKLLKLR--DQMGDAYDGRQEFFILGRVRMRMGFHWRLAC--WKKRAA  191
            ARVW+LNG+DTL KLL++R  D+  +      EFF++GRVRMRMG+HWR +   +++R +
Sbjct  189  ARVWILNGADTLAKLLQIRALDRKPEV----PEFFVMGRVRMRMGYHWRPSYAVRRRRIP  244

Query  192  GGQLLAA-------CPDCG-QVLEDLEGNLVTVEEFERG--DRRRTCSS------CRGAL  235
            +     +       CP CG ++L++ +    T      +    RR C +      C+ +L
Sbjct  245  SEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNALAKNRRFCKGNHHGKPCKEPL  304

Query  236  WTLIRPGKPDGGNRRAT---ILKSMCRIPTIGPVRAERLLNDFGEDFLATMLVDNVSEFI  292
            WTL R  ++++G   +    +LK+M  +P IGP  A +++  +GE++LA +L +N+  F 
Sbjct  305  WTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKIIGMYGEQYLAEILENNIQAFS  364

Query  293  NLMDAKGDFVFSDRQAKRMERSMANIEFGFGEGGYQPTEFIKRQLPNGYFDLLVVDEGHE  352
            NLMD +G+F+F DRQA R++R +++ EF++G GGYQPTEF+KR LP+ +F+LLVVDEGHE
Sbjct  365  NLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTEFVKRYLPKNFFGLLVVDEGHE  424

Query  353  YKNSGSAQGQAMGVLAAKARKTVLLTGTLMGGYADDLFYLLFRILTQRMIEDGYRPNARG  412
            YKN G+AQGQAMGVLA    K + LTGTLMGGYA+DLF+LL R+  Q MIEDG+  N   
Sbjct  425  YKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFFLLWRLWPQMMIEDGFSYNKGN  484

Query  413  SMAPAAMSFMRDHGVLKDIY----TERDGDSHKTARGKKLSVRTVKAPGFGPKGIHRFVL  468
            ++++A+M+FMR HGVLKDI     TE   ++  ++++ + SVRT KAPGF+P GI R+VL
Sbjct  485  TLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAERNSVRTAKAPGFSPLGIMRYVL  544

Query  469  PFTVFLKLKDIGGNVLPDYQEEFVDVPMAPDQASAYQRLAATLTAELRQALARRDTTllg  528
            P+TVFLKL+D+G  VLP+Y+E F  V M+ DQ + Y+ + + L  +L+ AL  RD TL G
Sbjct  545  PITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKNMESVLRQHLKVALRNRDNTLTG  604

Query  529  vvlnvllAWPDCCFRPEIVKHPRSRDTLAFVPAIFGDEQLMPKEQALVDLCLEEKAKGRK  588
            VV++ LL+WPDCC++P+ V   R    L    + F++E++ PKE  ++++  +  AKGRK
Sbjct  605  VVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEEEISPKEADMLEVVKDSLAKGRK  664

Query  589  VLAYTVYSGTRDTTSRLKKVLEQSGLKVAVLRASVDTARREDWILDQVDRGIDVLITNPE  648
             L YTVY++TRDTT+RLK ++ + G+K AV++A+V + +REDW+ DQ+  G++V+I NPE
Sbjct  665  CLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKADQREDWVEDQLASGVQVVICNPE  724

Query  649  LVKTGLDLLDFPTIAFLQTGYNVYTLQQAARRSWRIGQKHPVRVVFFGYAGSSQITCLQL  708
            LVKTGLDLL FPTI FLQTGYNVYTL QAARRSWRIGQK+ V V F GY++++Q  CL+L
Sbjct  725  LVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQKEDVEVYFAGYSDTAQQICLEL  784

Query  709  MAKKIAVAQSTSGDVPESGLDSLNQDGDSVEMALARQLIA  748
            M++K+AV+QSTSGD+P+SGLD LNQ  +SVE+ LA++++ 
Sbjct  785  MGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAKRFVD  824

17) PA14_59540 in NC_008463


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  621 bits (2348),  Expect = 3e-179, Method: Compositional matrix adjust.
 Identities = 383/760 (51%), Positives = 544/760 (72%), Gaps = 31/760 (4%)

Query  16   NINLTDFIDEFGDELLESLNRSNPPVYTGSVNAHRQLVMDRLKRKPFAAQAEVVQAITAL  75
            +I LT+F+ EFGD L++++   N PVY G   +  + V+D L R  FAAQ EVV+A+   
Sbjct  69   DIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLEEVLDNLERPLFAAQREVVRAVLQQ  128

Query  76   LLDRNEQAGIINAEMGTGKTmmaiavaavmhaaGYRRTLVVSPPHLVYKWRREILETIPA  135
            L+  +  A+IINAEMGTGKTMM++A AA  H AG +RTLV+SPPHLVYKWRREIL T+P 
Sbjct  129  LVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLHRTLVLSPPHLVYKWRREILKTVPN  188

Query  136  ARVWVLNGPDTLLKLLKLR--DQMGDAYDGRQEFFILGRVRMRMGFHWRLAC--WKKRAA  191
            ARVW+LNG+DTL KLL++R  D+  +      EFF++GRVRMRMG+HWR +   +++R +
Sbjct  189  ARVWILNGADTLAKLLQIRALDRKPEV----PEFFVMGRVRMRMGYHWRPSYAVRRRRIP  244

Query  192  GGQLLAA-------CPDCG-QVLEDLEGNLVTVEEFERG--DRRRTCSS------CRGAL  235
            +     +       CP CG ++L++ +    T      +    RR C +      C+ +L
Sbjct  245  SEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNALAKNRRFCKGNHHGKPCKEPL  304

Query  236  WTLIRPGKPDGGNRRAT---ILKSMCRIPTIGPVRAERLLNDFGEDFLATMLVDNVSEFI  292
            WTL R  ++++G   +    +LK+M  +P IGP  A +++  +GE++LA +L +N+  F 
Sbjct  305  WTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKIIGMYGEQYLAEILENNIQAFS  364

Query  293  NLMDAKGNFVFSDRQAKRMERSMANIEFGFGEGGYQPTEFIKRYLPDGYFDLLVLDEGHE  352
            NLMD +G+F+F DRQA R++R +++ EF++G GGYQPTEF+KRYLP  +F+LLV+DEGHE
Sbjct  365  NLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTEFVKRYLPKNFFGLLVVDEGHE  424

Query  353  YKNSGSAQGQAMGVLAAKARKTVLLTGTLMGGYADDLFYLLFRILTQRMIEDGYRPNARG  412
            YKN G+AQGQAMGVLA    K + LTGTLMGGYA+DLF+LL R+  Q MIEDG+  N   
Sbjct  425  YKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFFLLWRLWPQMMIEDGFSYNKGN  484

Query  413  SMAPAAMSFMRDHGVLKDIY----TERDGDSHKTARGKKLSVRTVKAPGFGPKGIHRFVL  468
            ++++A+M+FMR HGVLKDI     TE   ++  ++++ + SVRT KAPGF+P GI R+VL
Sbjct  485  TLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAERNSVRTAKAPGFSPLGIMRYVL  544

Query  469  PFTVFLKLKDIGGNVLPDYQEEFIDVPMAPEQASAYQRLAATLTAELRQALARRDTTllg  528
            P+TVFLKL+D+G  VLP+Y+E F  V M+ +Q + Y+ + + L  +L+ AL  RD TL G
Sbjct  545  PITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKNMESVLRQHLKVALRNRDNTLTG  604

Query  529  vvlnvllAWPDCCFRPEIVKHPRTRDTLAFVPAIFGDEQLIPKEQVLVDLCFEEKAKGRK  588
            VV++ LL+WPDCC++P+ V   R    L    + F++E++ PKE  ++++  +  AKGRK
Sbjct  605  VVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEEEISPKEADMLEVVKDSLAKGRK  664

Query  589  VLAYTVYSGTRDTTSRLKKVLEQSGLKVAVLRASVDTARREDWILDQVDRGIDVLITNPE  648
             L YTVY++TRDTT+RLK ++ + G+K AV++A+V + +REDW+ DQ+  G++V+I NPE
Sbjct  665  CLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKADQREDWVEDQLASGVQVVICNPE  724

Query  649  LVKTGLDLLDFPTIAFLQTGYNVYTLQQAARRSWRIGQKHPVRVVFFGYAGSSQITCLQL  708
            LVKTGLDLL FPTI FLQTGYNVYTL QAARRSWRIGQK+ V V F GY++++Q  CL+L
Sbjct  725  LVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQKEDVEVYFAGYSDTAQQICLEL  784

Query  709  MAKKIAVAQSTSGDVPESGLDSLNQDGDSVEMALARQLIA  748
            M++K+AV+QSTSGD+P+SGLD LNQ  +SVE+ LA++++ 
Sbjct  785  MGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAKRFVD  824

18) ebA2431 in NC_006513


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  621 bits (2347),  Expect = 4e-179, Method: Compositional matrix adjust.
 Identities = 391/782 (50%), Positives = 548/782 (71%), Gaps = 38/782 (4%)

Query  4    DLETIPETAAQGDLLEAAASPLILSLQDFVTEFGDELLDSLNRANPPVYTGQPRAHRQIV  63
            +   +PE +++ +L ++      ++L +F++EFGD L++++   N PVY GQ  +  + V
Sbjct  52   EAAVLPEESPETELPDSD-----IPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLEEV  106

Query  64   LAGLKRKLFQAQADVVHAVTELLVDRGERAAIVNGEMGCGKTTVGIATAAALNAEGYRRT  123
            L  L R LF AQ +VV+AV + LV  +  AAI+N+EMG GKT +++A+AAA +  G +RT
Sbjct  107  LDNLERPLFAAQREVVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLHRT  166

Query  124  LVLSPPHLVYKWRREIQETVASAKVWVLNGPDTLVKLLKLREQLGVPAHGQEFFVLGRVR  183
            LVLSPPHLVYKWRREI  TV++A+VW+LNG+DTL KLL++R  L+  ++  EFFV+GRVR
Sbjct  167  LVLSPPHLVYKWRREILKTVPNARVWILNGADTLAKLLQIRA-LDRKPEVPEFFVMGRVR  225

Query  184  MRMGFHWKPVFTRHRSRHGDVAA----------CPDCGHVITDLDGEP---ANPVELEAE  230
            MRMG+HW+P ++ +R R    +A          CP CG  I D +  P      V     
Sbjct  226  MRMGYHWRPSYAVRRRRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNALA  285

Query  231  EIRRKCS------HCAAPLWTLIRPRGLSASDQSS---SVLKALKRIPTIGEVTAQKLMQ  281
              RR C        C  PLWTL R      +  S+    VLK++  +P IG  TA K++ 
Sbjct  286  KNRRFCKGNHHGKPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKIIG  345

Query  282  KFGDAFLASMLGDNIHEFINLMDDRGELVFSDRQAHRMERAMANMEFGFGEGGYQPSEFI  341
             +G+ +LA +L +NI+ F NLMD+ GE++F DRQA R++R +++ EF++G GGYQP+EF+
Sbjct  346  MYGEQYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTEFV  405

Query  342  KRYLPQGTFDLLIADEAHEYKNGGSAQGQAMGVLAAKSRKtllltgtlmggygDDLFHLL  401
            KRYLP+  F+LL+ DE+HEYKN G+AQGQAMGVLA    K L LTGTLMGGY++DLF LL
Sbjct  406  KRYLPKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFFLL  465

Query  402  FRALPGRMIEDGYRPTKSGSMTSAAMAFMRDHGVLKDI-------YSEStgtahktakgt  454
             R  P  MIEDG+   K+ ++ SA+MAFMR HGVLKDI       YS+++ ++ K+ +  
Sbjct  466  WRLWPQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAERN-  524

Query  455  kVSVRTVKAPGFGPKGVLRCVLPFTVFLKLKDIGGNVLPPYDEEFREVAMDTAQAAAYRD  514
              SVRT KAPGF+P G++R VLP+TVFLKL+D+G  VLP Y E FR V M   Q A Y++
Sbjct  525  --SVRTAKAPGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKN  582

Query  515  LAGRLTQELKEALARRDTTllgvvlnvllAWPDCCFRSETVVHPRTRNTLAFVPAQFNEL  574
            + + L Q+LK AL  RD TL GVV++ LL+WPDCC++++ V   R  + L    +QF+E 
Sbjct  583  MESVLRQHLKVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEE  642

Query  575  EVMPKERELIEICKQEKAEGRKTLVYSVYTGTRDTTSRLKVLLEQEGFKVAVLRASVDAS  634
            E+ PKE +++E+ K+  A GRK LVY+VYT+TRDTT+RLK ++ ++G+K AV++A+V A 
Sbjct  643  EISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKAD  702

Query  635  RREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYSLQQAARRSWRIGQ  694
            +REDW+ +QL  G++V+I NPELVKTGLDLL FPTI F+Q+GYNVY+L QAARRSWRIGQ
Sbjct  703  QREDWVEDQLASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQ  762

Query  695  KQPVRVIYLGYANSSQMTCLGLMAKKIMVSQSTSGDVPESGLDVLNQDGDSVEVALARQL  754
            K+ V V + GY++++Q  CL LM++K+ V+QSTSGD+P+SGLD+LNQ  +SVEV LA+++
Sbjct  763  KEDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAKRF  822

Query  755  VA  756
            V 
Sbjct  823  VD  824

19) Tgr7_2839 in NC_011901


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  620 bits (2344),  Expect = 7e-179, Method: Compositional matrix adjust.
 Identities = 387/779 (50%), Positives = 545/779 (70%), Gaps = 32/779 (4%)

Query  4    DLETVPDTAVQGDLLEAAASPLTISLQDFVSEFGDELLDSLNRANPPVYAGQARAHRQTI  63
            +   +P+ + + +L ++      I+L +F++EFGD L++++   N PVY GQ+ +  + +
Sbjct  52   EAAVLPEESPETELPDSD-----IPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLEEV  106

Query  64   LAGLKRKLFPAQAEVVHAVTELLVDRGERAAIVNGEMGCGKTTVGIATAAVLNAEGYRRT  123
            L  L R LF+AQ EVV+AV + LV  +  AAI+N+EMG GKT +++A+AA  +  G +RT
Sbjct  107  LDNLERPLFAAQREVVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLHRT  166

Query  124  LVLSPPHLVYKWRREIQETVAGAKVWVLNGPDTLVKLLKLREQLGVPPQGQEFFVLGRVR  183
            LVLSPPHLVYKWRREI  TV+ A+VW+LNG+DTL KLL++R  L+  P+  EFFV+GRVR
Sbjct  167  LVLSPPHLVYKWRREILKTVPNARVWILNGADTLAKLLQIRA-LDRKPEVPEFFVMGRVR  225

Query  184  MRMGFHWKPVFVRWRTRHGDVGA----------CPHCGHVITDLDGEPINP---VELEAE  230
            MRMG+HW+P +  +R R    GA          CP CG  I D +  P N    V     
Sbjct  226  MRMGYHWRPSYAVRRRRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNALA  285

Query  231  ETRRKCG------HCASALWTLIRPRRLS---VNDQSQAVLKALKRIPTIGEVTAQKLMK  281
              RR C        C  +LWTL R  +     V+   + VLK++  +P IG  TA K++ 
Sbjct  286  KNRRFCKGNHHGKPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKIIG  345

Query  282  KFGESFLASMLGDNLYEFINLMDDNGELVFSDRQAQRMERAMASMEFGFGEGGYQPSEYV  341
             +GE +LA +L +N+  F NLMD+NGE++F DRQA R++R ++  EF++G GGYQP+E+V
Sbjct  346  MYGEQYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTEFV  405

Query  342  KRYLPQGTFDLLIADEAHEYKNAGSAQGQAMGVLASKSRKtllltgtlmggygDDLFYLL  401
            KRYLP+  F+LL+ DE+HEYKN G+AQGQAMGVLA    K L LTGTLMGGY++DLF+LL
Sbjct  406  KRYLPKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFFLL  465

Query  402  FRALPGRMIEDGYRPSKQGSLTPAAMAFMRDHGVLKDIY----SESNGSAHKTAKGSKIT  457
             R  P  MIEDG+  +K  +L +A+MAFMR HGVLKDI     +E + +A  ++K+ + +
Sbjct  466  WRLWPQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAERNS  525

Query  458  VRTVKAPGFGPKGVLRCVLPFTVFLKLKDIGGNVLPPYDEEFREVAMDAEQAQAYGRLAG  517
            VRT KAPGF+P G++R VLP+TVFLKL+D+G  VLP Y E FR V M  +Q   Y  + +
Sbjct  526  VRTAKAPGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKNMES  585

Query  518  QLTAELKQALARRDTTllgvvlnvllAWPDTCFRSETVKHPRTRNLLAFTPSLFTDLEVM  577
             L  +LK AL  RD TL GVV++ LL+WPD C++++ V   R  ++L  T + F + E+ 
Sbjct  586  VLRQHLKVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEEEIS  645

Query  578  PKERELIDICREEKAAGRKVLVYSVYTGTRDTTSRLKVLLEQEGFKVAVLRASVDASRRE  637
            PKE +++++ ++  A GRK LVY+VYT+TRDTT+RLK ++ ++G+K AV++A+V A +RE
Sbjct  646  PKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKADQRE  705

Query  638  DWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYSLQQAARRSWRIGQKQP  697
            DW+ +QL  G++V+I NPELVKTGLDLL FPTI F+Q+GYNVY+L QAARRSWRIGQK+ 
Sbjct  706  DWVEDQLASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQKED  765

Query  698  VRVIYLGYAATSQMTCLGLMAKKITVSQSTSGDVPESGLDVLNQDGDSVEVALARQLVH  756
            V V + GY+ T+Q  CL LM++K++V+QSTSGD+P+SGLD+LNQ  +SVEV LA+++V+
Sbjct  766  VEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAKRFVD  824

20) Rpic12D_0667 in NC_012856


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  619 bits (2338),  Expect = 2e-178, Method: Compositional matrix adjust.
 Identities = 390/753 (52%), Positives = 534/753 (71%), Gaps = 29/753 (3%)

Query  34   DFVAEFGDELLDSLNRANPPVYTGQARPHRQIVLASLKRKLFQAQAEVVHAVIELLADRG  93
            +F+AEFGD L++++   N PVY GQ+ P  + VL +L R LF AQ EVV+AV++ L   +
Sbjct  74   QFLAEFGDSLFNAVTEQNQPVYQGQTYPLLEEVLDNLERPLFAAQREVVRAVLQQLVAED  133

Query  94   ERAAIVNGEMGCGKTTVGIATAAVLHAEGYRRTLVLSPPHLVYKWRREIQETVAGAKVWV  153
              AAI+N+EMG GKT +++A+AA  H  G +RTLVLSPPHLVYKWRREI  TV+ A+VW+
Sbjct  134  KPAAIINAEMGTGKTMMSVAAAAAAHQAGLHRTLVLSPPHLVYKWRREILKTVPNARVWI  193

Query  154  LNGPDTLVKLIKLREQLGVPARGQEFFVLGRVRMRMGFHWKPVFNVRRTRHGEVGA----  209
            LNG+DTL KL+++R  L+  +   EFFV+GRVRMRMG+HW+P + VRR R    GA    
Sbjct  194  LNGADTLAKLLQIRA-LDRKPEVPEFFVMGRVRMRMGYHWRPSYAVRRRRIPSEGASEGF  252

Query  210  ------CPDCGQIITNLDGEPINP---VELEAEDYRRRCS------HCAAPLWTLMRPRS  254
                  CP CG  I + +  P N    V       RR C        C  PLWTL R + 
Sbjct  253  AVSEYYCPKCGCEILDEENKPYNTEGGVKNALAKNRRFCKGNHHGKPCKEPLWTLCR-KE  311

Query  255  LSASDQSTAVF----KALQRIPTIGEVTAQKLMRKFGDSFLASMLGDNIHEFINLMDGNG  310
             S  +  ++V+    K++  +P IG  TA K++  +G+ +LA +L +NI+ F NLMD NG
Sbjct  312  QSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKIIGMYGEQYLAEILENNIQAFSNLMDENG  371

Query  311  ELVFSDRQAHRMERAMANMEFGFGEGGYQPSEFIKRYLPQGTFDLLIADEAHEYKNGGSA  370
            E++F DRQA R++R +++ EF++G GGYQP+EF+KRYLP+  F+LL+ DE+HEYKN G+A
Sbjct  372  EFLFDDRQAARIDRDLGKAEFSLGRGGYQPTEFVKRYLPKNFFGLLVVDEGHEYKNYGTA  431

Query  371  QGQAMGVlaakarktllltgtlmggygDDLFHLLFRALPGRMIEDGYRPTKSGSMTSAAM  430
            QGQAMGVLA    K L LTGTLMGGY++DLF LL R  P  MIEDG+   K+ ++ SA+M
Sbjct  432  QGQAMGVLARCCNKILCLTGTLMGGYAEDLFFLLWRLWPQMMIEDGFSYNKGNTLGSASM  491

Query  431  AFMRDHGVLKDIY----SESTGTAHKTAKGNKVSVRTVKAPGFGPKGVLRCVLPFTVFLK  486
            AFMR HGVLKDI     +E +  A  ++K+++ SVRT KAPGF+P G++R VLP+TVFLK
Sbjct  492  AFMRKHGVLKDIVRHLGTEYSNGAFSSSKAERNSVRTAKAPGFSPLGIMRYVLPITVFLK  551

Query  487  LKDIGGNVLPPYDEEFREVAMDTAQAAAYRDLSGRLTTALKQALAKRDTTllgvvlnvll  546
            L+D+G  VLP Y E FR V M   Q A Y+++ + L   LK AL +RD TL GVV++ LL
Sbjct  552  LRDLGEGVLPGYKEVFRPVEMTEDQQAVYKNMESVLRQHLKVALRNRDNTLTGVVMSALL  611

Query  547  AWPDCCFRSETVVHPRTRQTLAFVPAQFNELEVMPKERELIEICKQEKAAGRKTLVYSVY  606
            +WPDCC++++ V   R  + L    +QF+E E+ PKE +++E+ K+  A GRK LVY+VY
Sbjct  612  SWPDCCYKPQDVYWRRQNKILFHTEPQFDEEEISPKEADMLEVVKDSLAKGRKCLVYTVY  671

Query  607  TGTRDTTSRLKVLLEQEGFKVAVLRASVDASRREDWIAEQLDRGIDVLITNPELVKTGLD  666
            T+TRDTT+RLK ++ ++G+K AV++A+V A +REDW+ +QL  G++V+I NPELVKTGLD
Sbjct  672  TDTRDTTGRLKEIFKRHGIKAAVMKATVKADQREDWVEDQLASGVQVVICNPELVKTGLD  731

Query  667  LLEFPTIVFMQSGYNVYSLQQAARRSWRIGQKQPVRVIYLGYAASSQMTCLGLMARKIMV  726
            LL FPTI F+Q+GYNVY+L QAARRSWRIGQK+ V V + GY+ ++Q  CL LM++K+ V
Sbjct  732  LLAFPTIYFLQTGYNVYTLMQAARRSWRIGQKEDVEVYFAGYSDTAQQICLELMGQKVAV  791

Query  727  SQSTSGDVPESGLDVLNQDGDSVEVALARQLVA  759
            +QSTSGD+P+SGLD+LNQ  +SVEV LA+++V 
Sbjct  792  TQSTSGDMPDSGLDILNQAEGSVEVQLAKRFVD  824

21) NCGM2_1839 in NC_017549


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  619 bits (2339),  Expect = 2e-178, Method: Compositional matrix adjust.
 Identities = 382/760 (51%), Positives = 543/760 (72%), Gaps = 31/760 (4%)

Query  16   NINLTDFIDEFGDELLESLNRSNPPVYTGSDNAHRQLVMDRLKRKPFAAQAEVVQAITAL  75
            +I LT+F+ EFGD L++++   N PVY G   +  + V+D L R  FAAQ EVV+A+   
Sbjct  69   DIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLEEVLDNLERPLFAAQREVVRAVLQQ  128

Query  76   LLDRNEQAGIINAEMGTGKTmmaiavaavmhaaGYRRTLVISPPHLVYKWRREILETIPA  135
            L+  +  A+IINAEMGTGKTMM++A AA  H AG +RTLV+SPPHLVYKWRREIL T+P 
Sbjct  129  LVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLHRTLVLSPPHLVYKWRREILKTVPN  188

Query  136  ARVWVLNGPDTLLKLLKLR--DQMGDAYDGRQEFFILGRVRMRMGFHWRLAC--WKKRAA  191
            ARVW+LNG+DTL KLL++R  D+  +      EFF++GRVRMRMG+HWR +   +++R +
Sbjct  189  ARVWILNGADTLAKLLQIRALDRKPEV----PEFFVMGRVRMRMGYHWRPSYAVRRRRIP  244

Query  192  GGQLLAA-------CPDCG-QVLEDLEGNLVTVEEFERG--DRRRTCSS------CRGAL  235
            +     +       CP CG ++L++ +    T      +    RR C +      C+ +L
Sbjct  245  SEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNALAKNRRFCKGNHHGKPCKEPL  304

Query  236  WTLIRPGKPNGGNRRAT---ILTSMCRIPTIGPVRAERLLNDFGEDFLATMLVDNVSEFI  292
            WTL R  ++++G   +    +L +M  +P IGP  A +++  +GE++LA +L +N+  F 
Sbjct  305  WTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKIIGMYGEQYLAEILENNIQAFS  364

Query  293  NLMDAKGNFVFSDRQAKRMERSMANIEFGFGEGGYQPTEFIKRQLPNGYFDLLVVDEGHE  352
            NLMD +G+F+F DRQA R++R +++ EF++G GGYQPTEF+KR LP+ +F+LLVVDEGHE
Sbjct  365  NLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTEFVKRYLPKNFFGLLVVDEGHE  424

Query  353  YKNSGSAQGQAMGVLAAKARKTVLLTGTLMGGYADDLFYLLFRILTQRMIEDGYRPNARG  412
            YKN G+AQGQAMGVLA    K + LTGTLMGGYA+DLF+LL R+  Q MIEDG+  N   
Sbjct  425  YKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFFLLWRLWPQMMIEDGFSYNKGN  484

Query  413  SMAPAAMSFMRDHGVLKDIY----TERDGDSHKTARGKKLSVRTVKAPGFGPKGIHRFVL  468
            ++++A+M+FMR HGVLKDI     TE   ++  ++++ + SVRT KAPGF+P GI R+VL
Sbjct  485  TLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAERNSVRTAKAPGFSPLGIMRYVL  544

Query  469  PFTVFLKLKDIGGNVLPDYQEEFVDVPMAPEQASAYQRLAATLTAELRQALARRDTTllg  528
            P+TVFLKL+D+G  VLP+Y+E F  V M+ +Q + Y+ + + L  +L+ AL  RD TL G
Sbjct  545  PITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKNMESVLRQHLKVALRNRDNTLTG  604

Query  529  vvlnvllAWPDCCFRPEIVKHPRSRDTLAFVPAIFGDEQLMPKEQALVDLCLEEKAKGRK  588
            VV++ LL+WPDCC++P+ V   R    L    + F++E++ PKE  ++++  +  AKGRK
Sbjct  605  VVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEEEISPKEADMLEVVKDSLAKGRK  664

Query  589  VLTYTVYSGTRDTTSRLKKVLEQSGLKVAVLRASVDTARREDWILDQVDRGIDVLITNPE  648
             L YTVY++TRDTT+RLK ++ + G+K AV++A+V + +REDW+ DQ+  G++V+I NPE
Sbjct  665  CLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKADQREDWVEDQLASGVQVVICNPE  724

Query  649  LVKTGLDLLDFPTIAFLQTGYNVYTLQQAARRSWRIGQKHPVRVVFFGYAGSSQITCLQL  708
            LVKTGLDLL FPTI FLQTGYNVYTL QAARRSWRIGQK+ V V F GY++++Q  CL+L
Sbjct  725  LVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQKEDVEVYFAGYSDTAQQICLEL  784

Query  709  MAKKIAVAQSTSGDVPESGLDSLNQDGDSVEMALARQLIA  748
            M++K+AV+QSTSGD+P+SGLD LNQ  +SVE+ LA++++ 
Sbjct  785  MGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAKRFVD  824

22) Psyr_1463 in NC_007005


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  617 bits (2333),  Expect = 5e-178, Method: Compositional matrix adjust.
 Identities = 389/773 (51%), Positives = 549/773 (72%), Gaps = 29/773 (3%)

Query  4    LPLAAPADHPCVPTLNIGLTEFIEEFGDELLESLNRSNPPVYAGIDNPARQWVLDGLKRQ  63
            LP  +P  +  +P  +I LT+F+ EFGD L++++   N PVY G   P  + VLD L R 
Sbjct  56   LPEESPETE--LPDSDIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLEEVLDNLERP  113

Query  64   PFPaqaqvvqaiaalllDQNEQAGIINAEMGTGKTMMAIALAAVMHGSGYRRTMVIAPPH  123
             F+AQ +VV+A+   L+ ++  A+IINAEMGTGKTMM++A AA  H +G +RT+V++PPH
Sbjct  114  LFAAQREVVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLHRTLVLSPPH  173

Query  124  LVYKWRREILETIPDARVWVLNGPDTLVKLLKLRDQLGDTYDGRQEFFILGRVRMRMGFH  183
            LVYKWRREIL T+P+ARVW+LNG+DTL KLL++R    D      EFF++GRVRMRMG+H
Sbjct  174  LVYKWRREILKTVPNARVWILNGADTLAKLLQIRAL--DRKPEVPEFFVMGRVRMRMGYH  231

Query  184  WRLAFWQRR-----AGGGRSLAA----CPDCGRLLQDQEGNLITAeefqreerrrr---C  231
            WR ++  RR      G++ ++A     CP CG  + D+E +   +E   ++   +    C
Sbjct  232  WRPSYAVRRRRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNALAKNRRFC  291

Query  232  D------HCDAALWTLMRPGKSDGGSRRNT---ILKSMCRIPTIGPVRAERLLSDFGEDF  282
                    C  +LWTL R  +S++G        +LK+M  +P IGP  A ++++ +GE++
Sbjct  292  KGNHHGKPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKIIGMYGEQY  351

Query  283  LASMLLDNVSEFINLMDAKGNFIFSDRQAKRMERAMANIEFGFGEGGYQPTEFIKRYLPD  342
            LA +L +N+  F NLMD +G+F+F DRQA R++R +++ EF++G GGYQPTEF+KRYLP 
Sbjct  352  LAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTEFVKRYLPK  411

Query  343  GCFDLLVVDEGHEYKNSGSAQGQAMGVLAAKARKTVLLTGTLMGGYADDLFYLLFRILTR  402
              F+LLVVDEGHEYKN G+AQGQAMGVLA    K + LTGTLMGGYA+DLF+LL R+  +
Sbjct  412  NFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFFLLWRLWPQ  471

Query  403  RMIEDGYQPNARGSMAPAAMSFMRDHGVLKDIY----TERDGSSHKTAKGKKLSVRTVKA  458
             MIEDG+  N   ++++A+M+FMR HGVLKDI     TE   ++  ++K+ + SVRT KA
Sbjct  472  MMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAERNSVRTAKA  531

Query  459  PGFGPKGIHRFVLPFTVFLKLKDIGGNVLPGYREEFIDVPMSPDQEAAHRKLAQTLTVEL  518
            PGF+P GI R+VLP+TVFLKL+D+G  VLPGY+E F  V M+ DQ+A  +++   L  +L
Sbjct  532  PGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKNMESVLRQHL  591

Query  519  RQALARRDTTllgvvlnvllAWPDCCFRPEVVKHPRSRDTLAFVPSVFDDDELMPKEQAL  578
            + AL  RD TL GVV++ LL+WPDCC++P+ V   R    L    + FD++E+ PKE  +
Sbjct  592  KVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEEEISPKEADM  651

Query  579  LDLCLAEKARNRKVLAYSVYTGTRDTTSRMKRVLEQSGLKVAVLRASVDTARREDWILDQ  638
            L++     A+ RK L Y+VYT+TRDTT+R+K ++ + G+K AV++A+V + +REDW+ DQ
Sbjct  652  LEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKADQREDWVEDQ  711

Query  639  VDRGVDVLITNPELVKTGLDLLDFPTIAFMQTGYNVYTVQQAARRSWRIGQKQDVRVIFF  698
            +  GV+V+I NPELVKTGLDLL FPTI F+QTGYNVYT+ QAARRSWRIGQK+DV V F 
Sbjct  712  LASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQKEDVEVYFA  771

Query  699  GYIGSSQITCLQLMAKKIAVSQSTSGDVPESGLDSLNQDGDSVEMALARQLIN  751
            GY +++Q  CL+LM++K+AV+QSTSGD+P+SGLD LNQ  +SVE+ LA+++++
Sbjct  772  GYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAKRFVD  824

23) Bpet1064 in NC_010170


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  617 bits (2332),  Expect = 6e-178, Method: Compositional matrix adjust.
 Identities = 391/784 (50%), Positives = 554/784 (71%), Gaps = 31/784 (3%)

Query  13   DHETTAAEAAPIQGELLDAESSPLTLSLQDFVGEFGDELLDALNSANPPVYAGQPQAHRQ  72
            +    ++EAA +  E  ++E +   ++L +F++EFGD L++A+   N PVY GQ  +  +
Sbjct  45   ETAQKSTEAAVLPEESPETELPDSDIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLE  104

Query  73   LIVASLKRKLFGAQAEVVHAAAELLIDRGERAAIVNGEMGCGKTTVGIATAAVLNAEGYR  132
             ++ +L R LF+AQ EVV+A  + L+  +  AAI+N+EMG GKT +++A+AA  +  G +
Sbjct  105  EVLDNLERPLFAAQREVVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLH  164

Query  133  RTLVLSPPHLVYKWRREIQETVAGAKVWVLNGPDTLVKLIRLREQLGVQATGQEFFVLGR  192
            RTLVLSPPHLVYKWRREI  TV+ A+VW+LNG+DTL KL+++R  L+ ++   EFFV+GR
Sbjct  165  RTLVLSPPHLVYKWRREILKTVPNARVWILNGADTLAKLLQIRA-LDRKPEVPEFFVMGR  223

Query  193  VRMRMGFHWKPVFTTRRTRHGDVAA----------CPDCGTVITDLDGEPVNP---VALE  239
            VRMRMG+HW+P ++ RR R    +A          CP CG  I D +  P N    V   
Sbjct  224  VRMRMGYHWRPSYAVRRRRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNA  283

Query  240  AEEYRRKCSNSD----CAAPLWTLIRPRSLSGSDQSSA---VLKALKRIPTIGEVTAQKL  292
                RR C  ++    C  PLWTL R     ++  S+    VLK++  +P IG  TA K+
Sbjct  284  LAKNRRFCKGNHHGKPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKI  343

Query  293  IQKFGDGFLASMLGDNIHEFINLMDGNGELVFSDRQATRMERAMANMEFGFGEGGYQPSE  352
            I  +G+ +LA +L +NI+ F NLMD NGE++F DRQA+R++R +++ EF++G GGYQP+E
Sbjct  344  IGMYGEQYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTE  403

Query  353  FIKRYLPQGTFDLLIADEAHEYKNGGSAQGQAMGVlaakarktllltgtlmggygDDLFY  412
            F+KRYLP+  F+LL+ DE+HEYKN G+AQGQAMGVLA    K L LTGTLMGGY++DLF+
Sbjct  404  FVKRYLPKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFF  463

Query  413  LLFRALPGRMIEDGYRPTTSGSMTSAAMAFMRDHGVLKDI-------YSEStgtahktak  465
            LL R  P  MIEDG+    + ++ SA+MAFMR HGVLKDI       YS+++ ++ K+ +
Sbjct  464  LLWRLWPQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAER  523

Query  466  gtkVSVRTVKAPGFGPKGVLRCILPFTIFLKLKDIGGNVLPPYDEEFREVAMDTAQAAAY  525
                SVRT KAPGF+P G++R +LP+T+FLKL+D+G  VLP Y E FR V M   Q A Y
Sbjct  524  N---SVRTAKAPGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVY  580

Query  526  RDLAGRLTAELKQALARRDTTllgvvlnvllAWPDCCFRSETVVHPRTRNTLAFVPAQFN  585
            +++ + L  +LK AL  RD TL GVV++ LL+WPDCC++++ V   R  + L    +QF+
Sbjct  581  KNMESVLRQHLKVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFD  640

Query  586  EFEISPKERELIEICKEEKAQGRKVLAYTVYTGTRDTTSRLKVLLEQEGFRVAVLRASVD  645
            E EISPKE +++E+ K+  A+GRK L YTVYT+TRDTT+RLK ++ ++G++ AV++A+V 
Sbjct  641  EEEISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVK  700

Query  646  ASRREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYSLQQAARRSWRI  705
            A +REDW+ +QL  G++V+I NPELVKTGLDLL FPTI F+Q+GYNVY+L QAARRSWRI
Sbjct  701  ADQREDWVEDQLASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRI  760

Query  706  GQKQPVRVIYLGYAGSSQMTCLELMAKKIMVSQSTSGDVPESGLDVLNQDGDSVEVALAR  765
            GQK+ V V + GY++++Q  CLELM++K+ V+QSTSGD+P+SGLD+LNQ  +SVEV LA+
Sbjct  761  GQKEDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAK  820

Query  766  QLVA  769
            ++V 
Sbjct  821  RFVD  824

24) Neut_0104 in NC_008344


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  615 bits (2324),  Expect = 2e-177, Method: Compositional matrix adjust.
 Identities = 384/782 (50%), Positives = 548/782 (71%), Gaps = 28/782 (3%)

Query  3    TQLEATTVAETIHTDEQADVAESELSFSLQDFVEEFGDELLDSLNRANPPVYNGTPRPER  62
            ++    +   ++  +E ++   ++  ++L +F+ EFGD L++++   N PVY+G   P  
Sbjct  44   AETAQKSTEAAVLPEESPETELPDSDIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLL  103

Query  63   QLVLAALKRQLFPaqaevvhaaaellvNQGERAAIINGEMGTGKTIVGIALAAVLNAEGY  122
            + VL  L R LF+AQ EVV+A  + LV ++  AAIIN+EMGTGKT++++A AA  +  G 
Sbjct  104  EEVLDNLERPLFAAQREVVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGL  163

Query  123  RRTLVLSPPHLVYKWRREILETVAGAKVWVLNGPDTLLKLIKLREQMGEEPTGQEFFIIG  182
            +RTLVLSPPHLVYKWRREIL TV+ A+VW+LNG+DTL KL+++R  ++  P   EFF++G
Sbjct  164  HRTLVLSPPHLVYKWRREILKTVPNARVWILNGADTLAKLLQIRA-LDRKPEVPEFFVMG  222

Query  183  RVRMRMGFHWKPAFMRKRTRDGVIGA----------CPHCGTEITDLDGEPINA---LEL  229
            RVRMRMG+HW+P++  +R R    GA          CP CG EI D +  P N+   +  
Sbjct  223  RVRMRMGYHWRPSYAVRRRRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKN  282

Query  230  EAEETRRKCN------VCTEALWTLMRPRTLSGNDQSSA---VLRALKRIPTIGEATAQK  280
                 RR C+       C E+LWTL R     +   S+    VL+++  +P IG  TA K
Sbjct  283  ALAKNRRFCKGNHHGKPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAK  342

Query  281  LMKMFGDSFLASMLGDNLHNFINLMDDRGELVFSDRQAQRMERAMSSMEFGFGEGGYQAS  340
            ++ M+G+ +LA +L +N++ F NLMD+ GE++F DRQA R++R ++  EF++G GGYQ++
Sbjct  343  IIGMYGEQYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPT  402

Query  341  EYVKRYLPQGTFDLLIADEAHEYKTGGSAQGQAMGVIAAKVRKTVLLTGTLMGGYADDLF  400
            E+VKRYLP+  F+LL+ DE+HEYK  G+AQGQAMGV+A    K + LTGTLMGGYA+DLF
Sbjct  403  EFVKRYLPKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLF  462

Query  401  HLLFRALPGRMIEDGYRPsssgsmssaamafmRDHGVLKDIF----SETDGPAHKTAKGS  456
             LL R  P  MIEDG+  + + +++SA+MAFMR HGVLKDI     +E    A  ++K+ 
Sbjct  463  FLLWRLWPQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAE  522

Query  457  KVSVRTVKAPGFGPKGVLRCILPYTIFLKLRDMG-GILPPYVEEFREVEMDAEQGDTYSS  515
            + SVRT KAPGF+P G++R +LP T+FLKLRD+G G+LP Y E FR VEM  +Q   Y +
Sbjct  523  RNSVRTAKAPGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKN  582

Query  516  LAANLTSALKEALRKRDTTllgvvlnvllAWSDCCFRAETVRHPRTRQVLAFTPVQFNEL  575
            + + L   LK ALR+RD TL GVV++ LL+W+DCC++++ V   R  ++L  T  QF+E 
Sbjct  583  MESVLRQHLKVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEE  642

Query  576  EIMPKERELIDICREEKSAGRKTLVYSVYTGTRDTTSRLKILLEQEGFKVAVLRASVDAS  635
            EI PKE +++++ ++  + GRK LVY+VYT+TRDTT+RLK ++ ++G+K AV++A+V A 
Sbjct  643  EISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKAD  702

Query  636  RREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYTLQQAARRSWRIGQ  695
            +REDW+ +QL  G++V+I NPELVKTGLDLL FPTI F+Q+GYNVYTL QAARRSWRIGQ
Sbjct  703  QREDWVEDQLASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQ  762

Query  696  KLAVRVIYLGYAATSQMTCLTLMAKKILVSQSTSGDVPESGLDVLNPDGDSVEVALARQL  755
            K  V V + GY+ T+Q  CL LM++K+ V+QSTSGD+P+SGLD+LN   +SVEV LA+++
Sbjct  763  KEDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAKRF  822

Query  756  VA  757
            V 
Sbjct  823  VD  824

25) PSTAB_1196 in NC_015740


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  614 bits (2318),  Expect = 7e-177, Method: Compositional matrix adjust.
 Identities = 391/781 (51%), Positives = 548/781 (71%), Gaps = 38/781 (4%)

Query  4    DLETVPETAVQGDLLETAASPLTLSLQDFVSEFGDELLDSLNRANPPVYTGQVRVHRQLI  63
            +   +PE + + +L ++      ++L +F++EFGD L++++   N PVY GQ     + +
Sbjct  52   EAAVLPEESPETELPDSD-----IPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLEEV  106

Query  64   LAALKRKLFPAQADVVHAVTELLVDRGERAAIVNGEMGCGKTTVGIATAAVLNAEGYRRT  123
            L  L R LF+AQ +VV+AV + LV  +  AAI+N+EMG GKT +++A+AA  +  G +RT
Sbjct  107  LDNLERPLFAAQREVVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLHRT  166

Query  124  LVLSPPHLVYKWRREIQETVAGAKVWVLNGPDTLVKLLKLREQLGVPAQGQEFFVLGRVR  183
            LVLSPPHLVYKWRREI  TV+ A+VW+LNG+DTL KLL++R  L+  ++  EFFV+GRVR
Sbjct  167  LVLSPPHLVYKWRREILKTVPNARVWILNGADTLAKLLQIRA-LDRKPEVPEFFVMGRVR  225

Query  184  MRMGFHWKPVFV--RRRTPHGDVGA--------CPDCGHVITDLDGEPINP---VALEAE  230
            MRMG+HW+P +   RRR P  + +         CP CG  I D +  P N    V     
Sbjct  226  MRMGYHWRPSYAVRRRRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNALA  285

Query  231  ESRRKCS------HCRAPLWSLIRPRGLSASDQSST---VLKALKRIPTIGEVTAQKLMQ  281
             +RR C        C+ PLW+L R      +  S+    VLK++  +P IG  TA K++ 
Sbjct  286  KNRRFCKGNHHGKPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKIIG  345

Query  282  KFGDAFLASMLGDNIHEFINLMDGNGELVFSDRQAHRMERAMANMEFGFGEGGYQPSEFI  341
             +G+ +LA +L +NI+ F NLMD NGE++F DRQA R++R +++ EF++G GGYQP+EF+
Sbjct  346  MYGEQYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTEFV  405

Query  342  KRQLPQGTFDLLIADEAHEYKNGGSAQGQAMGVlaakarktllltgtlmggygDDLFHLL  401
            KR LP+  F+LL+ DE+HEYKN G+AQGQAMGVLA    K L LTGTLMGGY++DLF LL
Sbjct  406  KRYLPKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFFLL  465

Query  402  FRALPGRMIEDGYRPTKSGSMTSAAMAFMRDHGVLKDI-------YSEStgtahktakgt  454
             R  P  MIEDG+   K+ ++ SA+MAFMR HGVLKDI       YS+++ ++ K+ +  
Sbjct  466  WRLWPQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAERN-  524

Query  455  kVSVRTVKAPGFGPKGVLRCVLPFTVFLKLKDIGGNVLPPYDEEFREVAMDTAQAAAYRD  514
              SVRT KAPGF+P G++R VLP+TVFLKL+D+G  VLP Y E FR V M   Q A Y++
Sbjct  525  --SVRTAKAPGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKN  582

Query  515  LAGRLTQELKQALAKRDTTllgvvlnvllAWPDCCFRSETVVHPRTRNTLAFVPAQFNEL  574
            + + L Q+LK AL +RD TL GVV++ LL+WPDCC++++ V   R  + L    +QF+E 
Sbjct  583  MESVLRQHLKVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEE  642

Query  575  EVMPKERELIEICKQEKAEGRKTLVYSVYTGTRDTTSRLKVLLEQEGFKVAVLRASVDAS  634
            E+ PKE +++E+ K+  A GRK LVY+VYT+TRDTT+RLK ++ ++G+K AV++A+V A 
Sbjct  643  EISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKAD  702

Query  635  RREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFLQSGYNVYSLQQAARRSWRIGQ  694
            +REDW+ +QL  G++V+I NPELVKTGLDLL FPTI FLQ+GYNVY+L QAARRSWRIGQ
Sbjct  703  QREDWVEDQLASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQ  762

Query  695  KQPVRVIYLGYANSSQMTCLGLMARKIMVSQSTSGDVPESGLDVLNQDGDSVEVALARQL  754
            K+ V V + GY++++Q  CL LM++K+ V+QSTSGD+P+SGLD+LNQ  +SVEV LA+++
Sbjct  763  KEDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAKRF  822

Query  755  V  755
            V
Sbjct  823  V  823

26) TMO_c0060 in NC_017958


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  614 bits (2318),  Expect = 7e-177, Method: Compositional matrix adjust.
 Identities = 392/784 (50%), Positives = 551/784 (71%), Gaps = 33/784 (4%)

Query  4    DLETTAADAAPVQGELLDAESSPLTLSLQDFVGEFGDELLDALNSANPPVYTGQPQAHRQ  63
            +    +++AA +  E  ++E +   ++L +F++EFGD L++A+   N PVY GQ  +  +
Sbjct  45   ETAQKSTEAAVLPEESPETELPDSDIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLE  104

Query  64   LIVASLKRKLFPAQAEVVHAAAELLIDRGERAAIVNGEMGCGKTTVGIAAAAVLNAEGYR  123
             ++ +L R LF+AQ EVV+A  + L+  +  AAI+N+EMG GKT +++AAAA  +  G +
Sbjct  105  EVLDNLERPLFAAQREVVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLH  164

Query  124  RTLVLSPPHLVYKWRREIQETVAGAKVWVLNGPDTLVKLLKLREQLGVQPTGQEFFVLGR  183
            RTLVLSPPHLVYKWRREI  TV+ A+VW+LNG+DTL KLL++R  L+ +P   EFFV+GR
Sbjct  165  RTLVLSPPHLVYKWRREILKTVPNARVWILNGADTLAKLLQIRA-LDRKPEVPEFFVMGR  223

Query  184  VRMRMGFHWKPVFTQRRTRHGDVAA----------CPDCGTVITDLDGEPVNP---VALE  230
            VRMRMG+HW+P ++ RR R    +A          CP CG  I D +  P N    V   
Sbjct  224  VRMRMGYHWRPSYAVRRRRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNA  283

Query  231  AEEYRRKCS------HCAAPLWTLIRPRSLSGSDQSSA---VLKALKRIPTIGEVTAQKL  281
                RR C        C  PLWTL R     ++  S+    VLK++  +P IG  TA K+
Sbjct  284  LAKNRRFCKGNHHGKPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKI  343

Query  282  MQKFGDGFLASMLGDNIHEFINLMDGNGELVFSDRQATRMERAMANMEFGFGEGGYQPSE  341
            +  +G+ +LA +L +NI+ F NLMD NGE++F DRQA+R++R +++ EF++G GGYQP+E
Sbjct  344  IGMYGEQYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTE  403

Query  342  FIKRYLPQGTFDLLIADEAHEYKNGGSAQGQAMGVlaakarktllltgtlmggygDDLFH  401
            F+KRYLP+  F+LL+ DE+HEYKN G+AQGQAMGVLA    K L LTGTLMGGY++DLF 
Sbjct  404  FVKRYLPKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFF  463

Query  402  LLFRALPGRMIEDGYRPTTSGSMTSAAMAFMRDHGVLKDI-------YSEStgtahktak  454
            LL R  P  MIEDG+    + ++ SA+MAFMR HGVLKDI       YS+++ ++ K+ +
Sbjct  464  LLWRLWPQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAER  523

Query  455  gtkVSVRTVKAPGFGPKGVLRCILPFTIFLKLKDIGGNVLPPYDEEFREVAMDTAQAAAY  514
                SVRT KAPGF+P G++R +LP+T+FLKL+D+G  VLP Y E FR V M   Q A Y
Sbjct  524  N---SVRTAKAPGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVY  580

Query  515  RDLAGRLTAELKQALARRDTTllgvvlnvllAWPDCCFRSETVVHPRTRNTLAFVPAQFN  574
            +++ + L  +LK AL  RD TL GVV++ LL+WPDCC++++ V   R  + L    +QF+
Sbjct  581  KNMESVLRQHLKVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFD  640

Query  575  EFEISPKERELIDICKEEKAQGRKVLAYTVYTGTRDTTSRLKVLLEQEGFKVAVLRASVD  634
            E EISPKE +++++ K+  A+GRK L YTVYT+TRDTT+RLK ++ ++G+K AV++A+V 
Sbjct  641  EEEISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVK  700

Query  635  ASRREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYSLQQAARRSWRI  694
            A +REDW+ +QL  G++V+I NPELVKTGLDLL FPTI F+Q+GYNVY+L QAARRSWRI
Sbjct  701  ADQREDWVEDQLASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRI  760

Query  695  GQKQPVRVIYLGYAGSSQMTCLELMAKKIMVSQSTSGDVPESGLDVLNQDGDSVEVALAR  754
            GQK+ V V + GY++++Q  CLELM++K+ V+QSTSGD+P+SGLD+LNQ  +SVEV LA+
Sbjct  761  GQKEDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAK  820

Query  755  QLVA  758
            ++V 
Sbjct  821  RFVD  824

27) PSTAA_1265 in NC_017532


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  613 bits (2315),  Expect = 1e-176, Method: Compositional matrix adjust.
 Identities = 391/780 (51%), Positives = 551/780 (71%), Gaps = 27/780 (3%)

Query  4    DLNTTANDAAPVQGELLEAESNPLTLSLQVFVGEFGDELLDSLNRANPPVYAGQAQAQRQ  63
            +    + +AA +  E  E+E     ++L  F++EFGD L++++   N PVY GQ+ +  +
Sbjct  45   ETAQKSTEAAVLPEESPETELPDSDIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLE  104

Query  64   LVVASLKRKLFqaqaevvhaaaellVDQGERAAIVNGEMGCGKTTVGIATAAVLNAEGYR  123
             V+ +L R LF AQ EVV+A  + LV ++  AAI+N+EMG GKT +++A+AA  +  G +
Sbjct  105  EVLDNLERPLFAAQREVVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLH  164

Query  124  RTLVLSPPHLVYKWRREIQETVAGAKVWVLNGPDTLVKLIKLREQLGVQPTGQEFFILGR  183
            RTLVLSPPHLVYKWRREI  TV+ A+VW+LNG+DTL KL+++R  L+ +P   EFF++GR
Sbjct  165  RTLVLSPPHLVYKWRREILKTVPNARVWILNGADTLAKLLQIRA-LDRKPEVPEFFVMGR  223

Query  184  VRMRMGFHWKPVFTQRRTRHGDVAA----------CPDCGTLITDLDGEPVNP---VALE  230
            VRMRMG+HW+P ++ RR R    +A          CP CG  I D +  P N    V   
Sbjct  224  VRMRMGYHWRPSYAVRRRRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNA  283

Query  231  AEESRRKCS------HCAAPLWTLIRPRSLSGSDQSSV---VLKALKRIPTIGEVTAQKL  281
               +RR C        C  PLWTL R     ++  S+V   VLK++  +P IG  TA K+
Sbjct  284  LAKNRRFCKGNHHGKPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKI  343

Query  282  MQKFGDGFLASMLGDNIHEFINLMDGNGELVFSDRQATRMERAMANMEFGFGEGGYQPSE  341
            +  +G+ +LA +L +NI+ F NLMD NGE++F DRQA+R++R +++ EF++G GGYQP+E
Sbjct  344  IGMYGEQYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTE  403

Query  342  FIKRYLPQGTFDLLIADEAHEYKNGGSAQGQAMGVlaakarktllltgtlmggygDDLFY  401
            F+KRYLP+  F+LL+ DE+HEYKN G+AQGQAMGVLA    K L LTGTLMGGY++DLF+
Sbjct  404  FVKRYLPKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFF  463

Query  402  LLFRALPGRMIEDGYRPTTSGSMTSAAMAFMRDHGVLKDIY----SESAGTAHKTAKGTK  457
            LL R  P  MIEDG+    + ++ SA+MAFMR HGVLKDI     +E +  A  ++K+ +
Sbjct  464  LLWRLWPQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAER  523

Query  458  VSVRTVKAPGFGPKGVLRCILPFTIFLKLKDIGGNVLPPYDEEFREVQMDVAQAAAYRDL  517
             SVRT KAPGF+P G++R +LP+T+FLKL+D+G  VLP Y E FR V+M   Q A Y+++
Sbjct  524  NSVRTAKAPGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKNM  583

Query  518  AGRLTAELKQALARRDTTllgvvlnvllAWPDCCFRSETVVHPRTRNTLAFVPAQFNEFE  577
             + L  +LK AL  RD TL GVV++ LL+WPDCC++++ V   R  + L    +QF+E E
Sbjct  584  ESVLRQHLKVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEEE  643

Query  578  ISPKERELIDICKAEKAQGRKVLAYTVYTGTRDTTSRLKGLLEQEGFKVAVLRASVDASR  637
            ISPKE +++++ K   A+GRK L YTVYT+TRDTT+RLK ++ ++G+K AV++A+V A +
Sbjct  644  ISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKADQ  703

Query  638  REDWIAEQLDRGIDVLVTNPELVKTGLDLLDFPTIVFMQSGYNVYSLQQAARRSWRIGQK  697
            REDW+ +QL  G++V++ NPELVKTGLDLL FPTI F+Q+GYNVY+L QAARRSWRIGQK
Sbjct  704  REDWVEDQLASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQK  763

Query  698  QPVRVIYLGYAGSSQMTCLELMAKKIMVSQSTSGDVPESGLDVLNQDGDSVEVALARQLV  757
            + V V + GY++++Q  CLELM++K+ V+QSTSGD+P+SGLD+LNQ  +SVEV LA+++V
Sbjct  764  EDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAKRFV  823

28) Alide_4011 in NC_014910


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  613 bits (2316),  Expect = 1e-176, Method: Compositional matrix adjust.
 Identities = 390/780 (50%), Positives = 548/780 (71%), Gaps = 33/780 (4%)

Query  8    TTAEATPVQGELLDAESNPLTLSLQDFVGEFGDELLDALNSANPPVYTGQPQAHRQVIVA  67
             ++EA+ +  E  ++E     ++L +F++EFGD L++A+   N PVY GQ  +  + ++ 
Sbjct  49   KSTEAAVLPEESPETELPDSDIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLEEVLD  108

Query  68   SLKRKLFPAQAEVVHAAAELLIDRGERAAIVNGEMGCGKTTVGIATAAVLNAEGYRRTLV  127
            +L R LF+AQ EVV+A  + L+  +  AAI+N+EMG GKT +++A+AA  +  G +RTLV
Sbjct  109  NLERPLFAAQREVVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLHRTLV  168

Query  128  LSPPHLVYKWRREIQETVAGAKVWVLNGPDTLVKLIKLREQLGVQPTGQEFFVLGRVRMR  187
            LSPPHLVYKWRREI  TV+ A+VW+LNG+DTL KL+++R  L+ +P   EFFV+GRVRMR
Sbjct  169  LSPPHLVYKWRREILKTVPNARVWILNGADTLAKLLQIRA-LDRKPEVPEFFVMGRVRMR  227

Query  188  MGFHWKPVFTTRRTRHGDVAA----------CPDCGTVITDLDGEPVNP---VALEAEEY  234
            MG+HW+P ++ RR R    +A          CP CG  I D +  P N    V       
Sbjct  228  MGYHWRPSYAVRRRRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNALAKN  287

Query  235  RRKCG------HCAAPLWTLIRPRSLSGSDQSSA---VLKALKRIPTIGEITAQKLMKRF  285
            RR C        C  PLWTL R     ++  S+    VLK++  +P IG  TA K++  +
Sbjct  288  RRFCKGNHHGKPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKIIGMY  347

Query  286  GDGFLASMLGDNVHEFINLMDGNGELVFSDRQATRMERAMASMEFGFGEGGYQPSEFIKR  345
            G+ +LA +L +N++ F NLMD NGE++F DRQA+R++R ++  EF++G GGYQP+EF+KR
Sbjct  348  GEQYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTEFVKR  407

Query  346  YLPQGTFDLLVADEAHEYKNGGSAQGQAMGVlaakarktllltgtlmggygDDLFHLLFR  405
            YLP+  F+LLV DE+HEYKN G+AQGQAMGVLA    K L LTGTLMGGY++DLF LL R
Sbjct  408  YLPKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFFLLWR  467

Query  406  ALPGRMIEDGYRPTTSGSMTSAAMAFMRDHGVLKDI-------YSEStgtahktakgtkV  458
              P  MIEDG+    + ++ SA+MAFMR HGVLKDI       YS+++ ++ K+ +    
Sbjct  468  LWPQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAERN---  524

Query  459  SVRTVKAPGFGPKGVLRCILPFTIFLKLKDIGGNVLPPYDEEFREVAMDTAQAAAYRDLA  518
            SVRT KAPGF+P G++R +LP+T+FLKL+D+G  VLP Y E FR V M   Q A Y+++ 
Sbjct  525  SVRTAKAPGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKNME  584

Query  519  GRLTAELKQALARRDTTllgvvlnvllAWPDCCFRSETVVHPRTRNTLAFVPAQFNEFEI  578
            + L  +LK AL  RD TL GVV++ LL+WPDCC++++ V   R  + L    +QF+E EI
Sbjct  585  SVLRQHLKVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEEEI  644

Query  579  SPKERELIDICKEEKAQGRKVLAYTVYTGTRDTTSRLKVLLEQEGFRVAVLRASVDASRR  638
            SPKE +++++ K+  A+GRK L YTVYT+TRDTT+RLK ++ ++G++ AV++A+V A +R
Sbjct  645  SPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKADQR  704

Query  639  EDWIAEQLDRGIDVLITNPELVKTGLDLLDFPTIVFMQSGYNVYSLQQAARRSWRIGQKQ  698
            EDW+ +QL  G++V+I NPELVKTGLDLL FPTI F+Q+GYNVY+L QAARRSWRIGQK+
Sbjct  705  EDWVEDQLASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQKE  764

Query  699  HVRVIYLGYAATSQMTCLELMAKKIMVSQSTSGDVPESGLDVLNQDGDSVEVALARQLVA  758
            +V V + GY+ T+Q  CLELM++K+ V+QSTSGD+P+SGLD+LNQ  +SVEV LA+++V 
Sbjct  765  DVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAKRFVD  824

29) Ajs_1285 in NC_008782


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  613 bits (2317),  Expect = 9e-177, Method: Compositional matrix adjust.
 Identities = 391/784 (50%), Positives = 552/784 (71%), Gaps = 33/784 (4%)

Query  4    DLETTAAEATPVQGELLDAESSPLTLSLQDFVGEFGDELLDALNSANPPVYTGQPQAHRQ  63
            +    ++EA+ +  E  ++E +   ++L +F++EFGD L++A+   N PVY GQ  +  +
Sbjct  45   ETAQKSTEAAVLPEESPETELPDSDIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLE  104

Query  64   LVVASLKRKLFPAQAEVVHAAAELLIDRGERAAIVNGEMGCGKTTVGIATAAVLNAEGYR  123
             V+ +L R LF+AQ EVV+A  + L+  +  AAI+N+EMG GKT +++A+AA  +  G +
Sbjct  105  EVLDNLERPLFAAQREVVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLH  164

Query  124  RTLVLSPPHLVYKWRREIQETVAGAKVWVLNGPDTLVKLIKLREQLGVQPTGQEFFVLGR  183
            RTLVLSPPHLVYKWRREI  TV+ A+VW+LNG+DTL KL+++R  L+ +P   EFFV+GR
Sbjct  165  RTLVLSPPHLVYKWRREILKTVPNARVWILNGADTLAKLLQIRA-LDRKPEVPEFFVMGR  223

Query  184  VRMRMGFHWKPVFTTRRTRHGDVAA----------CPDCGTVITDLDGEPVNP---IALQ  230
            VRMRMG+HW+P ++ RR R    +A          CP CG  I D +  P N    +   
Sbjct  224  VRMRMGYHWRPSYAVRRRRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNA  283

Query  231  AEECRRKCG------HCAAPLWTLIRPRSLSGSDQSSA---VLKALKRIPTIGEVTAQKL  281
                RR C        C  PLWTL R     ++  S+    VLK++  +P IG  TA K+
Sbjct  284  LAKNRRFCKGNHHGKPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKI  343

Query  282  MQKFGDGFLASMLGDNIHEFINLMDGNGELVFSDRQATRMERAMANMEFGFGEGGYQPSE  341
            +  +G+ +LA +L +NI+ F NLMD NGE++F DRQA+R++R +++ EF++G GGYQP+E
Sbjct  344  IGMYGEQYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTE  403

Query  342  FIKRYLPQGTFDLLIADEAHEYKNGGSAQGQAMGVlaakarktllltgtlmggygDDLFY  401
            F+KRYLP+  F+LL+ DE+HEYKN G+AQGQAMGVLA    K L LTGTLMGGY++DLF+
Sbjct  404  FVKRYLPKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFF  463

Query  402  LLFRALPGRMIEDGYRPTTSGSMTSAAMAFMRDHGVLKDI-------YSEStgtahktak  454
            LL R  P  MIEDG+    + ++ SA+MAFMR HGVLKDI       YS+++ ++ K+ +
Sbjct  464  LLWRLWPQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAER  523

Query  455  gtkVSVRTVKAPGFGPKGVLRCILPFTIFLKLKDIGGNVLPPYDEEFREVAMDVAQAAAY  514
                SVRT KAPGF+P G++R +LP+T+FLKL+D+G  VLP Y E FR V M   Q A Y
Sbjct  524  N---SVRTAKAPGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVY  580

Query  515  RDLAGRLTAELKQALARRDTTllgvvlnvllAWPDCCFRSETVVHPRTRNTLAFVPAQFN  574
            +++ + L  +LK AL  RD TL GVV++ LL+WPDCC++++ V   R  + L    +QF+
Sbjct  581  KNMESVLRQHLKVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFD  640

Query  575  EFEISPKERELIEICKEEKAQGRKVLAYTVYTGTRDTTSRLKVLLEQEGFRVAVLRASVD  634
            E EISPKE +++E+ K+  A+GRK L YTVYT+TRDTT+RLK ++ ++G++ AV++A+V 
Sbjct  641  EEEISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVK  700

Query  635  ASRREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYSLQQAARRSWRI  694
            A +REDW+ +QL  G++V+I NPELVKTGLDLL FPTI F+Q+GYNVY+L QAARRSWRI
Sbjct  701  ADQREDWVEDQLASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRI  760

Query  695  GQKQPVRVIYLGYSGSSQMTCLELMAKKIMVSQSTSGDVPESGLDVLNQDGDSVEVALAR  754
            GQK+ V V + GYS+++Q  CLELM++K+ V+QSTSGD+P+SGLD+LNQ  +SVEV LA+
Sbjct  761  GQKEDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAK  820

Query  755  QLVA  758
            ++V 
Sbjct  821  RFVD  824

30) NH44784_009701 in NC_021285


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  612 bits (2313),  Expect = 2e-176, Method: Compositional matrix adjust.
 Identities = 390/784 (50%), Positives = 551/784 (71%), Gaps = 33/784 (4%)

Query  4    DLETTAAESAPVQGELLDAESSPLTLSLQDFVGEFGDELLDALNSANPPVYTGQPQAHRQ  63
            +    ++E+A +  E  ++E +   ++L +F++EFGD L++A+   N PVY GQ  +  +
Sbjct  45   ETAQKSTEAAVLPEESPETELPDSDIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLE  104

Query  64   LVVASLKRKLFPAQAEVVHAAAELLIDRGERAAIVNGEMGCGKTTVGIATAAVLNAEGYR  123
             V+ +L R LF+AQ EVV+A  + L+  +  AAI+N+EMG GKT +++A+AA  +  G +
Sbjct  105  EVLDNLERPLFAAQREVVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLH  164

Query  124  RTLVLSPPHLVYKWRREIQETVAGAKVWVLNGPDTLVKLIKLREQLGVQPTGQEFFVLGR  183
            RTLVLSPPHLVYKWRREI  TV+ A+VW+LNG+DTL KL+++R  L+ +P   EFFV+GR
Sbjct  165  RTLVLSPPHLVYKWRREILKTVPNARVWILNGADTLAKLLQIRA-LDRKPEVPEFFVMGR  223

Query  184  VRMRMGFHWKPVFTTRRTRHGDVAA----------CPDCGTVITDLDGEPVNP---IALQ  230
            VRMRMG+HW+P ++ RR R    +A          CP CG  I D +  P N    +   
Sbjct  224  VRMRMGYHWRPSYAVRRRRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNA  283

Query  231  AEECRRKCG------HCAAPLWTLIRPRSLSGSDQSSA---VLKALKRIPTIGEVTAQKL  281
                RR C        C  PLWTL R     ++  S+    VLK++  +P IG  TA K+
Sbjct  284  LAKNRRFCKGNHHGKPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKI  343

Query  282  MQKFGDGFLASMLGDNIHEFINLMDGNGELVFSDRQATRMERAMANMEFGFGEGGYQPSE  341
            +  +G+ +LA +L +NI+ F NLMD NGE++F DRQA+R++R +++ EF++G GGYQP+E
Sbjct  344  IGMYGEQYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTE  403

Query  342  FIKRYLPQGTFDLLIADEAHEYKNGGSAQGQAMGVlaakarktllltgtlmggygDDLFH  401
            F+KRYLP+  F+LL+ DE+HEYKN G+AQGQAMGVLA    K L LTGTLMGGY++DLF 
Sbjct  404  FVKRYLPKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFF  463

Query  402  LLFRALPGRMIEDGYRPTTSGSMTSAAMAFMRDHGVLKDI-------YSEStgtahktak  454
            LL R  P  MIEDG+    + ++ SA+MAFMR HGVLKDI       YS+++ ++ K+ +
Sbjct  464  LLWRLWPQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAER  523

Query  455  gtkVSVRTVKAPGFGPKGVLRCILPFTIFLKLKDIGGNVLPPYDEEFREVAMDTAQAAAY  514
                SVRT KAPGF+P G++R +LP+T+FLKL+D+G  VLP Y E FR V M   Q A Y
Sbjct  524  N---SVRTAKAPGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVY  580

Query  515  RDLAGRLTAELKQALARRDTTllgvvlnvllAWPDCCFRSETVVHPRTRNTLAFVPAQFN  574
            +++ + L  +LK AL  RD TL GVV++ LL+WPDCC++++ V   R  + L    +QF+
Sbjct  581  KNMESVLRQHLKVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFD  640

Query  575  EFEISPKERELIDICKEEKAQGRKVLAYTVYTGTRDTTSRLKVLLEQEGFKVAVLRASVD  634
            E EISPKE +++++ K+  A+GRK L YTVYT+TRDTT+RLK ++ ++G+K AV++A+V 
Sbjct  641  EEEISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVK  700

Query  635  ASRREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYSLQQAARRSWRI  694
            A +REDW+ +QL  G++V+I NPELVKTGLDLL FPTI F+Q+GYNVY+L QAARRSWRI
Sbjct  701  ADQREDWVEDQLASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRI  760

Query  695  GQKQPVRVIYLGYAGSSQMTCLELMAKKIMVSQSTSGDVPESGLDVLNQDGDSVEVALAR  754
            GQK+ V V + GY++++Q  CLELM++K+ V+QSTSGD+P+SGLD+LNQ  +SVEV LA+
Sbjct  761  GQKEDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAK  820

Query  755  QLVA  758
            ++V 
Sbjct  821  RFVD  824

31) Rmet_2330 in NC_007973


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  612 bits (2313),  Expect = 2e-176, Method: Compositional matrix adjust.
 Identities = 390/784 (50%), Positives = 551/784 (71%), Gaps = 33/784 (4%)

Query  4    DLETTAAESAPVQGELLDAESSPLTLSLQDFVGEFGDELLDALNSANPPVYTGQPQAHRQ  63
            +    ++E+A +  E  ++E +   ++L +F++EFGD L++A+   N PVY GQ  +  +
Sbjct  45   ETAQKSTEAAVLPEESPETELPDSDIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLE  104

Query  64   LVVASLKRKLFPAQAEVVHAAAELLIDRGERAAIVNGEMGCGKTTVGIATAAVLNAEGYR  123
             V+ +L R LF+AQ EVV+A  + L+  +  AAI+N+EMG GKT +++A+AA  +  G +
Sbjct  105  EVLDNLERPLFAAQREVVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLH  164

Query  124  RTLVLSPPHLVYKWRREIQETVAGAKVWVLNGPDTLVKLIKLREQLGVQPTGQEFFVLGR  183
            RTLVLSPPHLVYKWRREI  TV+ A+VW+LNG+DTL KL+++R  L+ +P   EFFV+GR
Sbjct  165  RTLVLSPPHLVYKWRREILKTVPNARVWILNGADTLAKLLQIRA-LDRKPEVPEFFVMGR  223

Query  184  VRMRMGFHWKPVFTTRRTRHGDVAA----------CPDCGTVITDLDGEPVNP---IALQ  230
            VRMRMG+HW+P ++ RR R    +A          CP CG  I D +  P N    +   
Sbjct  224  VRMRMGYHWRPSYAVRRRRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNA  283

Query  231  AEECRRKCG------HCAAPLWTLIRPRSLSGSDQSSA---VLKALKRIPTIGEVTAQKL  281
                RR C        C  PLWTL R     ++  S+    VLK++  +P IG  TA K+
Sbjct  284  LAKNRRFCKGNHHGKPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKI  343

Query  282  MQKFGDGFLASMLGDNIHEFINLMDGNGELVFSDRQATRMERAMANMEFGFGEGGYQPSE  341
            +  +G+ +LA +L +NI+ F NLMD NGE++F DRQA+R++R +++ EF++G GGYQP+E
Sbjct  344  IGMYGEQYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTE  403

Query  342  FIKRYLPQGTFDLLIADEAHEYKNGGSAQGQAMGVlaakarktllltgtlmggygDDLFH  401
            F+KRYLP+  F+LL+ DE+HEYKN G+AQGQAMGVLA    K L LTGTLMGGY++DLF 
Sbjct  404  FVKRYLPKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFF  463

Query  402  LLFRALPGRMIEDGYRPTTSGSMTSAAMAFMRDHGVLKDI-------YSEStgtahktak  454
            LL R  P  MIEDG+    + ++ SA+MAFMR HGVLKDI       YS+++ ++ K+ +
Sbjct  464  LLWRLWPQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAER  523

Query  455  gtkVSVRTVKAPGFGPKGVLRCILPFTIFLKLKDIGGNVLPPYDEEFREVAMDTAQAAAY  514
                SVRT KAPGF+P G++R +LP+T+FLKL+D+G  VLP Y E FR V M   Q A Y
Sbjct  524  N---SVRTAKAPGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVY  580

Query  515  RDLAGRLTAELKQALARRDTTllgvvlnvllAWPDCCFRSETVVHPRTRNTLAFVPAQFN  574
            +++ + L  +LK AL  RD TL GVV++ LL+WPDCC++++ V   R  + L    +QF+
Sbjct  581  KNMESVLRQHLKVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFD  640

Query  575  EFEISPKERELIDICKEEKAQGRKVLAYTVYTGTRDTTSRLKVLLEQEGFKVAVLRASVD  634
            E EISPKE +++++ K+  A+GRK L YTVYT+TRDTT+RLK ++ ++G+K AV++A+V 
Sbjct  641  EEEISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVK  700

Query  635  ASRREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYSLQQAARRSWRI  694
            A +REDW+ +QL  G++V+I NPELVKTGLDLL FPTI F+Q+GYNVY+L QAARRSWRI
Sbjct  701  ADQREDWVEDQLASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRI  760

Query  695  GQKQPVRVIYLGYAGSSQMTCLELMAKKIMVSQSTSGDVPESGLDVLNQDGDSVEVALAR  754
            GQK+ V V + GY++++Q  CLELM++K+ V+QSTSGD+P+SGLD+LNQ  +SVEV LA+
Sbjct  761  GQKEDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAK  820

Query  755  QLVA  758
            ++V 
Sbjct  821  RFVD  824

32) PLES_26731 in NC_011770


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  612 bits (2313),  Expect = 2e-176, Method: Compositional matrix adjust.
 Identities = 390/784 (50%), Positives = 551/784 (71%), Gaps = 33/784 (4%)

Query  4    DLETTAAESAPVQGELLDAESSPLTLSLQDFVGEFGDELLDALNSANPPVYTGQPQAHRQ  63
            +    ++E+A +  E  ++E +   ++L +F++EFGD L++A+   N PVY GQ  +  +
Sbjct  45   ETAQKSTEAAVLPEESPETELPDSDIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLE  104

Query  64   LVVASLKRKLFPAQAEVVHAAAELLIDRGERAAIVNGEMGCGKTTVGIATAAVLNAEGYR  123
             V+ +L R LF+AQ EVV+A  + L+  +  AAI+N+EMG GKT +++A+AA  +  G +
Sbjct  105  EVLDNLERPLFAAQREVVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLH  164

Query  124  RTLVLSPPHLVYKWRREIQETVAGAKVWVLNGPDTLVKLIKLREQLGVQPTGQEFFVLGR  183
            RTLVLSPPHLVYKWRREI  TV+ A+VW+LNG+DTL KL+++R  L+ +P   EFFV+GR
Sbjct  165  RTLVLSPPHLVYKWRREILKTVPNARVWILNGADTLAKLLQIRA-LDRKPEVPEFFVMGR  223

Query  184  VRMRMGFHWKPVFTTRRTRHGDVAA----------CPDCGTVITDLDGEPVNP---IALQ  230
            VRMRMG+HW+P ++ RR R    +A          CP CG  I D +  P N    +   
Sbjct  224  VRMRMGYHWRPSYAVRRRRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNA  283

Query  231  AEECRRKCG------HCAAPLWTLIRPRSLSGSDQSSA---VLKALKRIPTIGEVTAQKL  281
                RR C        C  PLWTL R     ++  S+    VLK++  +P IG  TA K+
Sbjct  284  LAKNRRFCKGNHHGKPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKI  343

Query  282  MQKFGDGFLASMLGDNIHEFINLMDGNGELVFSDRQATRMERAMANMEFGFGEGGYQPSE  341
            +  +G+ +LA +L +NI+ F NLMD NGE++F DRQA+R++R +++ EF++G GGYQP+E
Sbjct  344  IGMYGEQYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTE  403

Query  342  FIKRYLPQGTFDLLIADEAHEYKNGGSAQGQAMGVlaakarktllltgtlmggygDDLFH  401
            F+KRYLP+  F+LL+ DE+HEYKN G+AQGQAMGVLA    K L LTGTLMGGY++DLF 
Sbjct  404  FVKRYLPKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFF  463

Query  402  LLFRALPGRMIEDGYRPTTSGSMTSAAMAFMRDHGVLKDI-------YSEStgtahktak  454
            LL R  P  MIEDG+    + ++ SA+MAFMR HGVLKDI       YS+++ ++ K+ +
Sbjct  464  LLWRLWPQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAER  523

Query  455  gtkVSVRTVKAPGFGPKGVLRCILPFTIFLKLKDIGGNVLPPYDEEFREVAMDTAQAAAY  514
                SVRT KAPGF+P G++R +LP+T+FLKL+D+G  VLP Y E FR V M   Q A Y
Sbjct  524  N---SVRTAKAPGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVY  580

Query  515  RDLAGRLTAELKQALARRDTTllgvvlnvllAWPDCCFRSETVVHPRTRNTLAFVPAQFN  574
            +++ + L  +LK AL  RD TL GVV++ LL+WPDCC++++ V   R  + L    +QF+
Sbjct  581  KNMESVLRQHLKVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFD  640

Query  575  EFEISPKERELIDICKEEKAQGRKVLAYTVYTGTRDTTSRLKVLLEQEGFKVAVLRASVD  634
            E EISPKE +++++ K+  A+GRK L YTVYT+TRDTT+RLK ++ ++G+K AV++A+V 
Sbjct  641  EEEISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVK  700

Query  635  ASRREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYSLQQAARRSWRI  694
            A +REDW+ +QL  G++V+I NPELVKTGLDLL FPTI F+Q+GYNVY+L QAARRSWRI
Sbjct  701  ADQREDWVEDQLASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRI  760

Query  695  GQKQPVRVIYLGYAGSSQMTCLELMAKKIMVSQSTSGDVPESGLDVLNQDGDSVEVALAR  754
            GQK+ V V + GY++++Q  CLELM++K+ V+QSTSGD+P+SGLD+LNQ  +SVEV LA+
Sbjct  761  GQKEDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAK  820

Query  755  QLVA  758
            ++V 
Sbjct  821  RFVD  824

33) Tmz1t_0972 in NC_011662


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  612 bits (2311),  Expect = 2e-176, Method: Compositional matrix adjust.
 Identities = 390/782 (50%), Positives = 549/782 (71%), Gaps = 38/782 (4%)

Query  4    DLETVPETAVQGDLLETAASPLTLSLQDFVSEFGDELLDSLNRANPPVYTGQVRVHRQLI  63
            +   +PE + + +L ++      ++L +F++EFGD L++++   N PVY GQ     + +
Sbjct  52   EAAVLPEESPETELPDSD-----IPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLEEV  106

Query  64   LAALKRKLFPAQADVVHAVTELLVDRGERAAIVNGEMGCGKTTVGIATAAVLNAEGYRRT  123
            L  L R LF+AQ +VV+AV + LV  +  AAI+N+EMG GKT +++A+AA  +  G +RT
Sbjct  107  LDNLERPLFAAQREVVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLHRT  166

Query  124  LVLSPPHLVYKWRREIQETVAGAKVWVLNGPDTLVKLLKLREQLGVPAQGQEFFVLGRVR  183
            LVLSPPHLVYKWRREI  TV+ A+VW+LNG+DTL KLL++R  L+  ++  EFFV+GRVR
Sbjct  167  LVLSPPHLVYKWRREILKTVPNARVWILNGADTLAKLLQIRA-LDRKPEVPEFFVMGRVR  225

Query  184  MRMGFHWKPIFV--RRRTPHGDVGA--------CPGCGHVITDLDGEPVNT---IDLEAE  230
            MRMG+HW+P +   RRR P  + +         CP CG  I D +  P NT   +     
Sbjct  226  MRMGYHWRPSYAVRRRRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNALA  285

Query  231  ESRRKCS------HCRAPLWSLIRPRGLSASDQSS---SVLKALKRIPTIGEVTAQKLMQ  281
             +RR C        C+ PLW+L R      +  S+    VLK++  +P IG  TA K++ 
Sbjct  286  KNRRFCKGNHHGKPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKIIG  345

Query  282  KFGDAFLASMLGDNIHEFINLMDGNGELVFSDRQAHRMERAMANMEFGFGEGGYQPSEFI  341
             +G+ +LA +L +NI+ F NLMD NGE++F DRQA R++R +++ EF++G GGYQP+EF+
Sbjct  346  MYGEQYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTEFV  405

Query  342  KRQLPQGTFDLLIADEAHEYKNGGSAQGQAMGVlaakarktllltgtlmggygDDLFHLL  401
            KR LP+  F+LL+ DE+HEYKN G+AQGQAMGVLA    K L LTGTLMGGY++DLF LL
Sbjct  406  KRYLPKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFFLL  465

Query  402  FRALPGRMIEDGYRPTKSGSMTSAAMAFMRDHGVLKDI-------YSEStgtahktakgt  454
             R  P  MIEDG+   K+ ++ SA+MAFMR HGVLKDI       YS+++ ++ K+ +  
Sbjct  466  WRLWPQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAERN-  524

Query  455  kVSVRTVKAPGFGPKGVLRCVLPFTVFLKLKDIGGNVLPPYDEEFREVAMDTAQAAAYRD  514
              SVRT KAPGF+P G++R VLP+TVFLKL+D+G  VLP Y E FR V M   Q A Y++
Sbjct  525  --SVRTAKAPGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKN  582

Query  515  LAGRLTQELKQALAKRDTTllgvvlnvllAWPDCCFRSETVVHPRTRNTLAFVPAQFNGL  574
            + + L Q+LK AL +RD TL GVV++ LL+WPDCC++++ V   R  + L    +QF+  
Sbjct  583  MESVLRQHLKVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEE  642

Query  575  EVMPKERELIEICKQEKAEGRKTLVYSVYTGTRDTTSRLKVLLEQEGFKVAVLRASVDAS  634
            E+ PKE +++E+ K+  A GRK LVY+VYT+TRDTT+RLK ++ ++G+K AV++A+V A 
Sbjct  643  EISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKAD  702

Query  635  RREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFLQSGYNVYSLQQAARRSWRIGQ  694
            +REDW+ +QL  G++V+I NPELVKTGLDLL FPTI FLQ+GYNVY+L QAARRSWRIGQ
Sbjct  703  QREDWVEDQLASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQ  762

Query  695  KQPVRVIYLGYANSSQMTCLGLMARKIMVSQSTSGDVPESGLDVLNQDGDSVEVALARQL  754
            K+ V V + GY++++Q  CL LM++K+ V+QSTSGD+P+SGLD+LNQ  +SVEV LA+++
Sbjct  763  KEDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAKRF  822

Query  755  VH  756
            V+
Sbjct  823  VD  824

34) BN117_0546 in NC_018828


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  611 bits (2310),  Expect = 3e-176, Method: Compositional matrix adjust.
 Identities = 392/787 (50%), Positives = 553/787 (71%), Gaps = 38/787 (4%)

Query  8    SITMSLDLETVPETAVQGDLLEAAASPLTLSLQDFVSEFGDELLDSLNRANPPVYTGQVR  67
            +   S +   +PE + + +L ++      ++L +F++EFGD L++++   N PVY GQ  
Sbjct  46   TAQKSTEAAVLPEESPETELPDSD-----IPLTQFLAEFGDSLFNAVTEQNQPVYQGQTY  100

Query  68   VHRQLILAALKRKLFPAQADVVHAVTELLVDRGERAAIVNGEMGCGKTTVGIATAAVLNA  127
               + +L  L R LF+AQ +VV+AV + LV  +  AAI+N+EMG GKT +++A+AA  + 
Sbjct  101  PLLEEVLDNLERPLFAAQREVVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQ  160

Query  128  EGYRRTLVLSPPHLVYKWRREIQETVAGAKVWVLNGPDTLVKLLKLREQLGVPAQGQEFF  187
             G +RTLVLSPPHLVYKWRREI  TV+ A+VW+LNG+DTL KLL++R  L+  ++  EFF
Sbjct  161  AGLHRTLVLSPPHLVYKWRREILKTVPNARVWILNGADTLAKLLQIRA-LDRKPEVPEFF  219

Query  188  VLGRVRMRMGFHWKPVFT-RRRTLHGDVAA---------CPDCGHIITDLDGEPINP---  234
            V+GRVRMRMG+HW+P ++ RRR + ++ A+         CP CG  I D +  P N    
Sbjct  220  VMGRVRMRMGYHWRPSYAVRRRRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGG  279

Query  235  VELEAEEYRRKCS------HCRAPLWSLIRPRGLSASDQSST---VLKALKRIPTIGEVT  285
            V       RR C        C+ PLW+L R      +  S+    VLK++  +P IG  T
Sbjct  280  VKNALAKNRRFCKGNHHGKPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKT  339

Query  286  AQKLMQKFGDAFLASMLGDNIHEFINLMDGNGELVFSDRQAHRMERAMANMEFGFGEGGY  345
            A K++  +G+ +LA +L +NI+ F NLMD NGE++F DRQA R++R +++ EF++G GGY
Sbjct  340  AAKIIGMYGEQYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGY  399

Query  346  QPSEFIKRQLPQGTFDLLIADEAHEYKNGGSAQGQAMGVlaakarktllltgtlmggygD  405
            QP+EF+KR LP+  F+LL+ DE+HEYKN G+AQGQAMGVLA    K L LTGTLMGGY++
Sbjct  400  QPTEFVKRYLPKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAE  459

Query  406  DLFHLLFRALPGRMIEDGYRPTKSGSMTSAAMAFMRDHGVLKDI-------YSEStgtah  458
            DLF LL R  P  MIEDG+   K+ ++ SA+MAFMR HGVLKDI       YS+++ ++ 
Sbjct  460  DLFFLLWRLWPQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSS  519

Query  459  ktakgtkVSVRTVKAPGFGPKGVLRCVLPFTVFLKLKDIGGNVLPPYDEEFREVAMDTAQ  518
            K+ +    SVRT KAPGF+P G++R VLP+TVFLKL+D+G  VLP Y E FR V M   Q
Sbjct  520  KAERN---SVRTAKAPGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQ  576

Query  519  AAAYRDLAGRLTQELKQALAKRDTTllgvvlnvllAWPDCCFRSETVVHPRTRNTLAFVP  578
             A Y+++ + L Q+LK AL +RD TL GVV++ LL+WPDCC++++ V   R  + L    
Sbjct  577  QAVYKNMESVLRQHLKVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTE  636

Query  579  AQFNELEVMPKERELIEICKQEKAEGRKTLVYSVYTGTRDTTSRLKVLLEQEGFKVAVLR  638
            +QF+E E+ PKE +++E+ K+  A GRK LVY+VYT+TRDTT+RLK ++ ++G+K AV++
Sbjct  637  PQFDEEEISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMK  696

Query  639  ASVDASRREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFLQSGYNVYSLQQAARR  698
            A+V A +REDW+ +QL  G++V+I NPELVKTGLDLL FPTI FLQ+GYNVY+L QAARR
Sbjct  697  ATVKADQREDWVEDQLASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARR  756

Query  699  SWRIGQKQPVRVIYLGYANSSQMTCLGLMARKITVSQSTSGDVPESGLDVLNQDGDSVEV  758
            SWRIGQK+ V V + GY++++Q  CL LM++K++V+QSTSGD+P+SGLD+LNQ  +SVEV
Sbjct  757  SWRIGQKEDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEV  816

Query  759  ALARQLV  765
             LA+++V
Sbjct  817  QLAKRFV  823

35) Ajs_2220 in NC_008782


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  611 bits (2309),  Expect = 4e-176, Method: Compositional matrix adjust.
 Identities = 390/782 (50%), Positives = 549/782 (71%), Gaps = 38/782 (4%)

Query  4    DLETVPETAVQGDLLEAAASPLTLSLQDFVSEFGDELLDSLNRANPPVYTGQVRGHRQLI  63
            +   +PE + + +L ++      ++L +F++EFGD L++++   N PVY GQ     + +
Sbjct  52   EAAVLPEESPETELPDSD-----IPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLEEV  106

Query  64   LAALKRKLFPAQADVVHAVTELLVDRGERAAIVNGEMGCGKTTVGIATAAMLNAEGYRRT  123
            L  L R LF+AQ +VV+AV + LV  +  AAI+N+EMG GKT +++A+AA  +  G +RT
Sbjct  107  LDNLERPLFAAQREVVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLHRT  166

Query  124  LVLSPPHLVYKWRREIQETVAGAKVWVLNGPDTLVKLLKLREQLGVPAQGQEFFVLGRVR  183
            LVLSPPHLVYKWRREI  TV+ A+VW+LNG+DTL KLL++R  L+  ++  EFFV+GRVR
Sbjct  167  LVLSPPHLVYKWRREILKTVPNARVWILNGADTLAKLLQIRA-LDRKPEVPEFFVMGRVR  225

Query  184  MRMGFHWKPVFV--RRRMPHGDVGA--------CPDCGHVITDLDGEPINP---VELEAE  230
            MRMG+HW+P +   RRR+P  + +         CP CG  I D +  P N    V     
Sbjct  226  MRMGYHWRPSYAVRRRRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNALA  285

Query  231  ESRRKCS------HCRAPLWSLIRPRGLSASDQSST---VLKALKRIPTIGEVTAQKLMQ  281
             +RR C        C+ PLW+L R      +  S+    VLK++  +P IG  TA K++ 
Sbjct  286  KNRRFCKGNHHGKPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKIIG  345

Query  282  KFGDAFLASMLGDNIHEFINLMDGNGELVFSDRQAHRMERAMANMEFGFGEGGYQPSEFI  341
             +G+ +LA +L +NI+ F NLMD NGE++F DRQA R++R +++ EF++G GGYQP+EF+
Sbjct  346  MYGEQYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTEFV  405

Query  342  KRQLPQGTFDLLIADEAHEYKNGGSAQGQAMGVlaakarktllltgtlmggygDDLFHLL  401
            KR LP+  F+LL+ DE+HEYKN G+AQGQAMGVLA    K L LTGTLMGGY++DLF LL
Sbjct  406  KRYLPKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFFLL  465

Query  402  FRALPGRMIEDGYRPTKSGSMTSAAMAFMRDHGVLKDI-------YSEStgtahktakgt  454
             R  P  MIEDG+   K+ ++ SA+MAFMR HGVLKDI       YS+++ ++ K+ +  
Sbjct  466  WRLWPQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAERN-  524

Query  455  kVSVRTVKAPGFGPKGVLRCVLPFTVFLKLKDICGNVLPPYDEEFREVAMDTAQAAAYRD  514
              SVRT KAPGF+P G++R VLP+TVFLKL+D+   VLP Y E FR V M   Q A Y++
Sbjct  525  --SVRTAKAPGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKN  582

Query  515  LAGRLTQELKQALAKRDTTllgvvlnvllAWPDCCFRSETVVHPRTRNTLAFVPAQFNEL  574
            + + L Q+LK AL +RD TL GVV++ LL+WPDCC++++ V   R  + L    +QF+E 
Sbjct  583  MESVLRQHLKVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEE  642

Query  575  EVMPKERELIEICKQEKAEGRKTLVYSVYTGTRDTTSRLKVLLEQEGLKVAVLRASVDAS  634
            E+ PKE +++E+ K+  A GRK LVY+VYT+TRDTT+RLK ++ ++G+K AV++A+V A 
Sbjct  643  EISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKAD  702

Query  635  RREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFLQSGYNVYSLQQAARRSWRIGQ  694
            +REDW+ +QL  G++V+I NPELVKTGLDLL FPTI FLQ+GYNVY+L QAARRSWRIGQ
Sbjct  703  QREDWVEDQLASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQ  762

Query  695  KQPVRVIYLGYANSSQMTCLGLMAKKIMVSQSTSGDVPESGLDVLNQDGDSVEVALARQL  754
            K+ V V + GY++++Q  CL LM++K+ V+QSTSGD+P+SGLD+LNQ  +SVEV LA+++
Sbjct  763  KEDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAKRF  822

Query  755  VH  756
            V+
Sbjct  823  VD  824

36) NCGM2_1427 in NC_017549


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  611 bits (2308),  Expect = 5e-176, Method: Compositional matrix adjust.
 Identities = 391/780 (51%), Positives = 550/780 (71%), Gaps = 27/780 (3%)

Query  4    DLDTTANDAASVQGELLEAESNPLTLSLQDFVGEFGDELLDSLNRANPPVYTGQPQAQRQ  63
            +    + +AA +  E  E+E     ++L +F++EFGD L++++   N PVY GQ  +  +
Sbjct  45   ETAQKSTEAAVLPEESPETELPDSDIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLE  104

Query  64   LVVASLKRKLFPaqvevvhaaaellvDQGERAAIVNGEMGCGKTTVGIATAAVLNAEGYR  123
             V+ +L R LF+AQ EVV+A  + LV ++  AAI+N+EMG GKT +++A+AA  +  G +
Sbjct  105  EVLDNLERPLFAAQREVVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLH  164

Query  124  RTLVLSPPHLVYKWRREIQETVAGAKVWVLNGPDTLVKLIKLREQLGVQPTGQEFFILGR  183
            RTLVLSPPHLVYKWRREI  TV+ A+VW+LNG+DTL KL+++R  L+ +P   EFF++GR
Sbjct  165  RTLVLSPPHLVYKWRREILKTVPNARVWILNGADTLAKLLQIRA-LDRKPEVPEFFVMGR  223

Query  184  VRMRMGFHWKPVFNQRRTRHGDVAA----------CPDCGTLITDLDGEPVNPIG---LE  230
            VRMRMG+HW+P +  RR R    +A          CP CG  I D +  P N  G     
Sbjct  224  VRMRMGYHWRPSYAVRRRRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNA  283

Query  231  AEESRRKCS------HCAAPLWTLIRPRSLSGSDQSSV---VLKALKRIPTIGEVTAQKL  281
               +RR C        C  PLWTL R     ++  S+V   VLK++  +P IG  TA K+
Sbjct  284  LAKNRRFCKGNHHGKPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKI  343

Query  282  MQKFGDGFLASMLGDNIHEFINLMDGNGELVFSDRQATRMERAMANMEFGFGEGGYQPSE  341
            +  +G+ +LA +L +NI+ F NLMD NGE++F DRQA+R++R +++ EF++G GGYQP+E
Sbjct  344  IGMYGEQYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTE  403

Query  342  FIKRYLPQGTFDLLIADEAHEYKNGGSAQGQAMGVlaakarktllltgtlmggygDDLFY  401
            F+KRYLP+  F+LL+ DE+HEYKN G+AQGQAMGVLA    K L LTGTLMGGY++DLF+
Sbjct  404  FVKRYLPKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFF  463

Query  402  LLFRALPGRMIEDGYRPTTSGSMTSAAMAFMRDHGVLKDIY----SESAGTAHKTAKGTK  457
            LL R  P  MIEDG+    + ++ SA+MAFMR HGVLKDI     +E +  A  ++K+ +
Sbjct  464  LLWRLWPQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAER  523

Query  458  VSVRTVKAPGFGPKGVLRCILPFTIFLKLKDIGGNVLPPYDEEFREVQMDVAQAAAYRDL  517
             SVRT KAPGF+P G++R +LP+T+FLKL+D+G  VLP Y E FR V+M   Q A Y+++
Sbjct  524  NSVRTAKAPGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKNM  583

Query  518  ASRLTAELKQALARRDTTllgvvlnvllAWPDCCFRSETVVHPRTRNTLAFVPAQFNEFE  577
             S L  +LK AL  RD TL GVV++ LL+WPDCC++++ V   R  + L    +QF+E E
Sbjct  584  ESVLRQHLKVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEEE  643

Query  578  ISPKERELIDICKAEKEQGRKVLAYTVYTGTRDTTSRLKGLLEQEGFKVAVLRASVDASR  637
            ISPKE +++++ K    +GRK L YTVYT+TRDTT+RLK ++ ++G+K AV++A+V A +
Sbjct  644  ISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKADQ  703

Query  638  REDWIAEQLDRGIDVLVTNPELVKTGLDLLEFPTIVFMQSGYNVYSLQQAARRSWRIGQK  697
            REDW+ +QL  G++V++ NPELVKTGLDLL FPTI F+Q+GYNVY+L QAARRSWRIGQK
Sbjct  704  REDWVEDQLASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQK  763

Query  698  QPVRVIYLGYAGSSQMTCLELMAKKIMVSQSTSGDVPESGLDVLNQDGDSVEVALARQLV  757
            + V V + GY++++Q  CLELM++K+ V+QSTSGD+P+SGLD+LNQ  +SVEV LA+++V
Sbjct  764  EDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAKRFV  823

37) AXYL_01085 in NC_014640


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  609 bits (2302),  Expect = 1e-175, Method: Compositional matrix adjust.
 Identities = 390/784 (50%), Positives = 549/784 (71%), Gaps = 33/784 (4%)

Query  4    DLETTAAESAPVQGELLDAESSPLTLSLQDFVGEFGDELLDALNSANPPVYTGQPQAHRQ  63
            +    ++E+A +  E  ++E +   ++L +F++EFGD L++A+   N PVY GQ  +  +
Sbjct  45   ETAQKSTEAAVLPEESPETELPDSDIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLE  104

Query  64   LVVASLKRKLFPAQAEVVHAAAELLIDRGERAAIVNGEMGCGKTTVGIATAAVLNAEGYR  123
             V+ +L R LF+AQ EVV+A  + L+  +  AAI+N+EMG GKT +++A+AA  +  G +
Sbjct  105  EVLDNLERPLFAAQREVVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLH  164

Query  124  RTLVLSPPHLVYKWRREIQETVAGAKVWVLNGPDTLVKLIKLREQLGVQPTGQEFFVLGR  183
            RTLVLSPPHLVYKWRREI  TV+ A+VW+LNG+DTL KL+++R  L+ +P   EFFV+GR
Sbjct  165  RTLVLSPPHLVYKWRREILKTVPNARVWILNGADTLAKLLQIRA-LDRKPEVPEFFVMGR  223

Query  184  VRMRMGFHWKPVFTTRRTRHGDVAA----------CPDCGTVITDLDGEPVNP---IALQ  230
            VRMRMG+HW+P ++ RR R    +A          CP CG  I D +  P N    +   
Sbjct  224  VRMRMGYHWRPSYAVRRRRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNA  283

Query  231  AEECRRKCG------HCAAPLWTLIRPRSLSGSDQSSA---VLKALKRIPTIGEVTAQKL  281
                RR C        C  PLWTL R     ++  S+    VLK++  +P IG  TA K+
Sbjct  284  LAKNRRFCKGNHHGKPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKI  343

Query  282  MQKFGDGFLASMLGDNIHEFINLMDGNGELVFSDRQATRMERAMANMEFGFGEGGYQPSE  341
            +  +G+ +LA +L +NI+ F NLMD NGE++F DRQA+R++R +++ EF++G GGYQP+E
Sbjct  344  IGMYGEQYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTE  403

Query  342  FIKRYLPQGTFDLLIADEAHEYKNGGSAQGQAMGVlaakarktllltgtlmggygDDLFH  401
            F+KRYLP+  F+LL+ DE+HEYKN G+AQGQAMGVLA    K L LTGTLMGGY++DLF 
Sbjct  404  FVKRYLPKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFF  463

Query  402  LLFRALPGRMIEDGYRPTTSGSMTSAAMAFMRDHGVLKDI-------YSEStgtahktak  454
            LL R  P  MIEDG+    + ++ SA+MAFMR HGVLKDI       YS+++ ++ K+ +
Sbjct  464  LLWRLWPQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAER  523

Query  455  gtkVSVRTVKAPGFGPKGVLRCILPFTIFLKLKDIGGNVLPPYDEEFREVAMDTAQAAAY  514
                SVRT KAPGF+P G++R +LP+T+FLKL+D+G  VLP Y E FR V M   Q A Y
Sbjct  524  N---SVRTAKAPGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVY  580

Query  515  RDLAGRLTAELKQALARRDTTllgvvlnvllAWPDCCFRSETVVHPRTRNTLAFVPAQFN  574
            +++ + L  +LK AL  RD TL GVV++ LL+WPDCC++++ V   R  + L    +QF+
Sbjct  581  KNMESVLRQHLKVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFD  640

Query  575  EFEISPKERELIDICKAEKAQGRKVLAYTVYTGTRDTTSRLKVLLEQEGFKVAVLRASVD  634
            E EISPKE +++++ K   A+GRK L YTVYT+TRDTT+RLK ++ ++G+K AV++A+V 
Sbjct  641  EEEISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVK  700

Query  635  ASRREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYSLQQAARRSWRI  694
            A +REDW+ +QL  G++V+I NPELVKTGLDLL FPTI F+Q+GYNVY+L QAARRSWRI
Sbjct  701  ADQREDWVEDQLASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRI  760

Query  695  GQKLPVRVIYLGYAGSSQMTCLELMAKKIMVSQSTSGDVPESGLDVLNQDGDSVEVALAR  754
            GQK  V V + GY++++Q  CLELM++K+ V+QSTSGD+P+SGLD+LNQ  +SVEV LA+
Sbjct  761  GQKEDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAK  820

Query  755  QLVA  758
            ++V 
Sbjct  821  RFVD  824

38) A458_06210 in NC_018028


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  607 bits (2295),  Expect = 5e-175, Method: Compositional matrix adjust.
 Identities = 390/767 (51%), Positives = 541/767 (71%), Gaps = 33/767 (4%)

Query  7    ETAASPLTLSLQDFVSEFGDELLDSLNRANPPVYTGQVRVHRQLILAALKRKLFPAQADV  66
            ET  +   ++L +F++EFGD L++++   N PVY GQ     + +L  L R LF+AQ +V
Sbjct  62   ETELPDSDIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLEEVLDNLERPLFAAQREV  121

Query  67   VHAVTELLVDRGERAAIVNGEMGCGKTTVGIATAAVLNAEGYRRTLVLSPPHLVYKWRRE  126
            V+AV + LV  +  AAI+N+EMG GKT +++A+AA  +  G +RTLVLSPPHLVYKWRRE
Sbjct  122  VRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLHRTLVLSPPHLVYKWRRE  181

Query  127  IQETVAGAKVWVLNGPDTLVKLLKLREQLGVPAQGQEFFVLGRVRMRMGFHWKPVFV--R  184
            I  TV+ A+VW+LNG+DTL KLL++R  L+  ++  EFFV+GRVRMRMG+HW+P +   R
Sbjct  182  ILKTVPNARVWILNGADTLAKLLQIRA-LDRKPEVPEFFVMGRVRMRMGYHWRPSYAVRR  240

Query  185  RRTPHGDVGA--------CPACGHVITDLDGEPVNT---IDLEAEESRRKCS------HC  227
            RR P  + +         CP CG  I D +  P NT   +      +RR C        C
Sbjct  241  RRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNALAKNRRFCKGNHHGKPC  300

Query  228  TSPLWTLIRPRGLSASDQSST---VLKALKRIPTIGEVTAQKLMQKFGDAFLASMLGDNI  284
              PLWTL R      +  S+    VLK++  +P IG  TA K++  +G+ +LA +L +NI
Sbjct  301  KEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKIIGMYGEQYLAEILENNI  360

Query  285  HEFINLMDGNGELVFSDRQAHRMERAMANMEFGFGEGGYQPSEFIKRQLPQGTFDLLIAD  344
            + F NLMD NGE++F DRQA R++R +++ EF++G GGYQP+EF+KR LP+  F+LL+ D
Sbjct  361  QAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTEFVKRYLPKNFFGLLVVD  420

Query  345  EAHEYKNGGSAQGQAMGVlaakarktllltgtlmggygDDLFHLLFRALPGRMIEDGYRP  404
            E+HEYKN G+AQGQAMGVLA    K L LTGTLMGGY++DLF LL R  P  MIEDG+  
Sbjct  421  EGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFFLLWRLWPQMMIEDGFSY  480

Query  405  TKSGSMTSAAMAFMRDHGVLKDI-------YSEStgtahktakgtkVSVRTVKAPGFGPK  457
             K+ ++ SA+MAFMR HGVLKDI       YS+++ ++ K+ +    SVRT KAPGF+P 
Sbjct  481  NKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAERN---SVRTAKAPGFSPL  537

Query  458  GVLRCVLPFTVFLKLKDICGNVLPPYDEEFREVAMDTAQAAAYRDLAGRLTQELKQALAK  517
            G++R VLP+TVFLKL+D+   VLP Y E FR V M   Q A Y+++ + L Q+LK AL +
Sbjct  538  GIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKNMESVLRQHLKVALRN  597

Query  518  RDTTllgvvlnvllAWPDCCFRSETVVHPRTRNTLAFVPAQFNELEVMPKERELIEICKQ  577
            RD TL GVV++ LL+WPDCC++++ V   R  + L    +QF+E E+ PKE +++E+ K+
Sbjct  598  RDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEEEISPKEADMLEVVKD  657

Query  578  EKAEGRKTLVYSVYTGTRDTTSRLKVLLEQEGLKVAVLRASVDASRREDWIAEQLDRGID  637
              A GRK LVY+VYT+TRDTT+RLK ++ ++G+K AV++A+V A +REDW+ +QL  G++
Sbjct  658  SLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKADQREDWVEDQLASGVQ  717

Query  638  VLITNPELVKTGLDLLEFPTIVFLQSGYNVYSLQQAARRSWRIGQKQPVRVIYLGYANSS  697
            V+I NPELVKTGLDLL FPTI FLQ+GYNVY+L QAARRSWRIGQK+ V V + GY++++
Sbjct  718  VVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQKEDVEVYFAGYSDTA  777

Query  698  QMTCLGLMAKKIMVSQSTSGDVPESGLDVLNQDGDSVEVALARQLVH  744
            Q  CL LM++K+ V+QSTSGD+P+SGLD+LNQ  +SVEV LA+++V+
Sbjct  778  QQICLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAKRFVD  824

39) Mpe_A2368 in NC_008825


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  607 bits (2295),  Expect = 5e-175, Method: Compositional matrix adjust.
 Identities = 389/782 (50%), Positives = 550/782 (71%), Gaps = 38/782 (4%)

Query  4    DLETVPETAVQGDLLEAAASPLTLSLQDFVSEFGDELLDSLNRANPPVYTGQVRVHRQLI  63
            +   +PE + + +L ++      ++L +F++EFGD L++++   N PVY GQ     + +
Sbjct  52   EAAVLPEESPETELPDSD-----IPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLEEV  106

Query  64   LAALKRKLFPAQADVVHAVTELLVDRGERAAIVNGEMGCGKTTVGIATAAVLNAEGYRRT  123
            L  L R LF+AQ +VV+AV + LV  +  AAI+N+EMG GKT +++A+AA  +  G +RT
Sbjct  107  LDNLERPLFAAQREVVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLHRT  166

Query  124  LVLSPPHLVYKWRREIQETVAGAKVWVLNGPDTLVKLLKLREQLGVPAHGQEFFVLGRVR  183
            LVLSPPHLVYKWRREI  TV+ A+VW+LNG+DTL KLL++R  L+  ++  EFFV+GRVR
Sbjct  167  LVLSPPHLVYKWRREILKTVPNARVWILNGADTLAKLLQIRA-LDRKPEVPEFFVMGRVR  225

Query  184  MRMGFHWKPVF-VQRCTLHGDVGA---------CPDCGHVITDLDGEPINP---VELEAE  230
            MRMG+HW+P + V+R  + ++ ++         CP CG  I D +  P N    V     
Sbjct  226  MRMGYHWRPSYAVRRRRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNALA  285

Query  231  ESRRKCS------HCRAPLWSLIRPRGLSASDQSST---VLKALKRIPTIGEVTAQKLMQ  281
             +RR C        C+ PLW+L R      +  S+    VLK++  +P IG  TA K++ 
Sbjct  286  KNRRFCKGNHHGKPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKIIG  345

Query  282  KFGDAFLASMLGDNIHEFINLMDGNGELVFSDRQAHRMERAMANMEFGFGEGGYQPSEFI  341
             +G+ +LA +L +NI+ F NLMD NGE++F DRQA R++R +++ EF++G GGYQP+EF+
Sbjct  346  MYGEQYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTEFV  405

Query  342  KRQLPQGTFDLLIADEAHEYKNGGSAQGQAMGVlaakarktllltgtlmggygDDLFHLL  401
            KR LP+  F+LL+ DE+HEYKN G+AQGQAMGVLA    K L LTGTLMGGY++DLF LL
Sbjct  406  KRYLPKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFFLL  465

Query  402  FRALPGRMIEDGYRPTKSGSMTSAAMAFMRDHGVLKDI-------YSEStgtahktakgt  454
             R  P  MIEDG+   K+ ++ SA+MAFMR HGVLKDI       YS+++ ++ K+ +  
Sbjct  466  WRLWPQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAERN-  524

Query  455  kVSVRTVKAPGFGPKGVLRCVLPFTVFLKLKDIGGNVLPPYDEEFREVAMDTAQAAAYRD  514
              SVRT KAPGF+P G++R VLP+TVFLKL+D+G  VLP Y E FR V M   Q A Y++
Sbjct  525  --SVRTAKAPGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKN  582

Query  515  LAGRLTQELKQALAKRDTTllgvvlnvllAWPDCCFRSETVVHPRTRNTLAFVPAQFNEL  574
            + + L Q+LK AL +RD TL GVV++ LL+WPDCC++++ V   R  + L    +QF+E 
Sbjct  583  MESVLRQHLKVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEE  642

Query  575  EVMPKERELIEICKQEKAEGRKTLVYSVYTGTRDTTSRLKVLLEQEGFKVAVLRASVDAS  634
            E+ PKE +++E+ K+  A GRK LVY+VYT+TRDTT+RLK ++ ++G+K AV++A+V A 
Sbjct  643  EISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKAD  702

Query  635  RREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFLQSGYNVYSLQQAARRSWRIGQ  694
            +REDW+ +QL  G++V+I NPELVKTGLDLL FPTI FLQ+GYNVY+L QAARRSWRIGQ
Sbjct  703  QREDWVEDQLASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQ  762

Query  695  KQPVRVIYLGYANSSQMTCLGLMAKKIMVSQSTSGDVPESGLDVLNQDGDSVEVALARQL  754
            K+ V V + GY++++Q  CL LM++K+ V+QSTSGD+P+SGLD+LNQ  +SVEV LA+++
Sbjct  763  KEDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAKRF  822

Query  755  VA  756
            V 
Sbjct  823  VD  824

40) Ajs_1417 in NC_008782


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  607 bits (2293),  Expect = 7e-175, Method: Compositional matrix adjust.
 Identities = 386/781 (50%), Positives = 548/781 (71%), Gaps = 27/781 (3%)

Query  4    DLETTAAEATPVQGELLDAESSPLTLSLQDFVGEFGDELLDALNSANPPVYNGQPQTRRQ  63
            +    ++EA+ +  E  ++E +   ++L +F++EFGD L++A+   N PVY+GQ     +
Sbjct  45   ETAQKSTEAAVLPEESPETELPDSDIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLE  104

Query  64   LIVAGLKRKLFPAQAEVVHAAAELLIDRGERAAIVNGEMGCGKTTVGIATAAVLNAEGYR  123
             ++  L R LF+AQ EVV+A  + L+  +  AAI+N+EMG GKT +++A+AA  +  G +
Sbjct  105  EVLDNLERPLFAAQREVVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLH  164

Query  124  RTLVLSPPHLVYKWRREIQETVAGAKVWVLNGPDTLVKLIKLREQLGVHPTGQEFFILGR  183
            RTLVLSPPHLVYKWRREI  TV+ A+VW+LNG+DTL KL+++R  L+  P   EFF++GR
Sbjct  165  RTLVLSPPHLVYKWRREILKTVPNARVWILNGADTLAKLLQIRA-LDRKPEVPEFFVMGR  223

Query  184  VRMRMGFHWKPVFTQRRTRHGHVAA----------CPDCGTVITDLDGEPVNP---VALQ  230
            VRMRMG+HW+P ++ RR R    +A          CP CG  I D +  P N    V   
Sbjct  224  VRMRMGYHWRPSYAVRRRRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNA  283

Query  231  AEEYRRKCS------HCAAPLWTLIRPRSLSGSDQSSA---VLKALKRIPTIGEVTAQKL  281
                RR C        C  PLWTL R     ++  S+    VLK++  +P IG  TA K+
Sbjct  284  LAKNRRFCKGNHHGKPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKI  343

Query  282  MQKFGDGFLASMLGDNIHEFINLMDGNGELVFSDRQAHRMERAMANMEFGFGEGGYQPSE  341
            +  +G+ +LA +L +NI+ F NLMD NGE++F DRQA R++R +++ EF++G GGYQP+E
Sbjct  344  IGMYGEQYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTE  403

Query  342  FIKRYLPQGTFDLLIADEAHEYKNGGSAQGQAMGVlaakarktllltgtlmggygDDLFH  401
            F+KRYLP+  F+LL+ DE+HEYKN G+AQGQAMGVLA    K L LTGTLMGGY++DLF 
Sbjct  404  FVKRYLPKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFF  463

Query  402  LLFRALPGRMIEDGYRPstsgsmtsaamaFMRDHGVLKDIY----SESAGTAHKTAKGTK  457
            LL R  P  MIEDG+  + + ++ SA+MAFMR HGVLKDI     +E +  A  ++K+ +
Sbjct  464  LLWRLWPQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAER  523

Query  458  VSVRTVKAPGFGPKGVLRCILPFTIFLKLKDIGGNVLPPYDEEFREVAMDTAQAAAYRDL  517
             SVRT KAPGF+P G++R +LP+T+FLKL+D+G  VLP Y E FR V M   Q A Y+++
Sbjct  524  NSVRTAKAPGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKNM  583

Query  518  AGRLTAELKQALARRDTTllgvvlnvllAWPDCCFRSETVVHPRTRNTLAFVPAQFNEFE  577
             + L  +LK AL  RD TL GVV++ LL+WPDCC++++ V   R  + L    +QF+E E
Sbjct  584  ESVLRQHLKVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEEE  643

Query  578  VTPKERELIDICKEEKAQGRKVLAYTVYTGTRDTTSRLKVLLEQEGFRVAVLRASVDASR  637
            ++PKE +++++ K+  A+GRK L YTVYT+TRDTT+RLK ++ ++G++ AV++A+V A +
Sbjct  644  ISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKADQ  703

Query  638  REDWIAEQLDRGIDVLITNPELVKTGLDLLDFPTIVFMQSGYNVYSLQQAARRSWRIGQK  697
            REDW+ +QL  G++V+I NPELVKTGLDLL FPTI F+Q+GYNVY+L QAARRSWRIGQK
Sbjct  704  REDWVEDQLASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQK  763

Query  698  QPVRVIYLGYAGSSQMTCLELMAKKIMVSQSTSGDVPESGLDVLNQDGDSVEVALARQLV  757
            + V V + GY++++Q  CLELM++K+ V+QSTSGD+P+SGLD+LNQ  +SVEV LA+++V
Sbjct  764  EDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAKRFV  823

Query  758  A  758
             
Sbjct  824  D  824

41) XCV2386 in NC_007508


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  607 bits (2293),  Expect = 7e-175, Method: Compositional matrix adjust.
 Identities = 386/781 (50%), Positives = 548/781 (71%), Gaps = 27/781 (3%)

Query  4    DLETTAAEATPVQGELLDAESSPLTLSLQDFVGEFGDELLDALNSANPPVYNGQPQTRRQ  63
            +    ++EA+ +  E  ++E +   ++L +F++EFGD L++A+   N PVY+GQ     +
Sbjct  45   ETAQKSTEAAVLPEESPETELPDSDIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLE  104

Query  64   LIVAGLKRKLFPAQAEVVHAAAELLIDRGERAAIVNGEMGCGKTTVGIATAAVLNAEGYR  123
             ++  L R LF+AQ EVV+A  + L+  +  AAI+N+EMG GKT +++A+AA  +  G +
Sbjct  105  EVLDNLERPLFAAQREVVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLH  164

Query  124  RTLVLSPPHLVYKWRREIQETVAGAKVWVLNGPDTLVKLIKLREQLGVHPTGQEFFILGR  183
            RTLVLSPPHLVYKWRREI  TV+ A+VW+LNG+DTL KL+++R  L+  P   EFF++GR
Sbjct  165  RTLVLSPPHLVYKWRREILKTVPNARVWILNGADTLAKLLQIRA-LDRKPEVPEFFVMGR  223

Query  184  VRMRMGFHWKPVFTQRRTRHGHVAA----------CPDCGTVITDLDGEPVNP---VALQ  230
            VRMRMG+HW+P ++ RR R    +A          CP CG  I D +  P N    V   
Sbjct  224  VRMRMGYHWRPSYAVRRRRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNA  283

Query  231  AEEYRRKCS------HCAAPLWTLIRPRSLSGSDQSSA---VLKALKRIPTIGEVTAQKL  281
                RR C        C  PLWTL R     ++  S+    VLK++  +P IG  TA K+
Sbjct  284  LAKNRRFCKGNHHGKPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKI  343

Query  282  MQKFGDGFLASMLGDNIHEFINLMDGNGELVFSDRQAHRMERAMANMEFGFGEGGYQPSE  341
            +  +G+ +LA +L +NI+ F NLMD NGE++F DRQA R++R +++ EF++G GGYQP+E
Sbjct  344  IGMYGEQYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTE  403

Query  342  FIKRYLPQGTFDLLIADEAHEYKNGGSAQGQAMGVlaakarktllltgtlmggygDDLFH  401
            F+KRYLP+  F+LL+ DE+HEYKN G+AQGQAMGVLA    K L LTGTLMGGY++DLF 
Sbjct  404  FVKRYLPKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFF  463

Query  402  LLFRALPGRMIEDGYRPstsgsmtsaamaFMRDHGVLKDIY----SESAGTAHKTAKGTK  457
            LL R  P  MIEDG+  + + ++ SA+MAFMR HGVLKDI     +E +  A  ++K+ +
Sbjct  464  LLWRLWPQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAER  523

Query  458  VSVRTVKAPGFGPKGVLRCILPFTIFLKLKDIGGNVLPPYDEEFREVAMDTAQAAAYRDL  517
             SVRT KAPGF+P G++R +LP+T+FLKL+D+G  VLP Y E FR V M   Q A Y+++
Sbjct  524  NSVRTAKAPGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKNM  583

Query  518  AGRLTAELKQALARRDTTllgvvlnvllAWPDCCFRSETVVHPRTRNTLAFVPAQFNEFE  577
             + L  +LK AL  RD TL GVV++ LL+WPDCC++++ V   R  + L    +QF+E E
Sbjct  584  ESVLRQHLKVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEEE  643

Query  578  VTPKERELIDICKEEKAQGRKVLAYTVYTGTRDTTSRLKVLLEQEGFRVAVLRASVDASR  637
            ++PKE +++++ K+  A+GRK L YTVYT+TRDTT+RLK ++ ++G++ AV++A+V A +
Sbjct  644  ISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKADQ  703

Query  638  REDWIAEQLDRGIDVLITNPELVKTGLDLLDFPTIVFMQSGYNVYSLQQAARRSWRIGQK  697
            REDW+ +QL  G++V+I NPELVKTGLDLL FPTI F+Q+GYNVY+L QAARRSWRIGQK
Sbjct  704  REDWVEDQLASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQK  763

Query  698  QPVRVIYLGYAGSSQMTCLELMAKKIMVSQSTSGDVPESGLDVLNQDGDSVEVALARQLV  757
            + V V + GY++++Q  CLELM++K+ V+QSTSGD+P+SGLD+LNQ  +SVEV LA+++V
Sbjct  764  EDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAKRFV  823

Query  758  A  758
             
Sbjct  824  D  824

42) SMD_1541 in NC_017671


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  607 bits (2292),  Expect = 8e-175, Method: Compositional matrix adjust.
 Identities = 389/784 (50%), Positives = 549/784 (71%), Gaps = 34/784 (4%)

Query  4    DLETTAAESAPVQGELLDAESSPLTLSLQDFVGEFGDELLDALNSANPPVYTGQPQAHRQ  63
            +    ++E+A +  E  ++E +   ++L +F++EFGD L++A+   N PVY GQ  +  +
Sbjct  45   ETAQKSTEAAVLPEESPETELPDSDIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLE  104

Query  64   LVVASLKRKLFPAQAEVVHAAAELLIDRGERAAIVNGEMGCGKTTVGIAAAVL-NAEGYR  122
             V+ +L R LF+AQ EVV+A  + L+  +  AAI+N+EMG GKT +++AAA   +  G +
Sbjct  105  EVLDNLERPLFAAQREVVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLH  164

Query  123  RTLVLSPPHLVYKWRREIQETVAGAKVWVLNGPDTLVKLIKLREQLGVQPTGQEFFVLGR  182
            RTLVLSPPHLVYKWRREI  TV+ A+VW+LNG+DTL KL+++R  L+ +P   EFFV+GR
Sbjct  165  RTLVLSPPHLVYKWRREILKTVPNARVWILNGADTLAKLLQIRA-LDRKPEVPEFFVMGR  223

Query  183  VRMRMGFHWKPVFTTRRTRHGDVAA----------CPDCGTVITDLDGEPVNP---IALQ  229
            VRMRMG+HW+P ++ RR R    +A          CP CG  I D +  P N    +   
Sbjct  224  VRMRMGYHWRPSYAVRRRRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNA  283

Query  230  AEECRRKCG------HCAAPLWTLIRPRSLSGSDQSSA---VLKALKRIPTIGEVTAQKL  280
                RR C        C  PLWTL R     ++  S+    VLK++  +P IG  TA K+
Sbjct  284  LAKNRRFCKGNHHGKPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKI  343

Query  281  MQKFGDGFLASMLGDNIHEFINLMDGNGELVFSDRQATRMERAMANMEFGFGEGGYQPSE  340
            +  +G+ +LA +L +NI+ F NLMD NGE++F DRQA+R++R +++ EF++G GGYQP+E
Sbjct  344  IGMYGEQYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTE  403

Query  341  FIKRYLPQGTFDLLIADEAHEYKNGGSAQGQAMGVlaakarktllltgtlmggygDDLFH  400
            F+KRYLP+  F+LL+ DE+HEYKN G+AQGQAMGVLA    K L LTGTLMGGY++DLF 
Sbjct  404  FVKRYLPKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFF  463

Query  401  LLFRALPGRMIEDGYRPTTSGSMTSAAMAFMRDHGVLKDI-------YSEStgtahktak  453
            LL R  P  MIEDG+    + ++ SA+MAFMR HGVLKDI       YS+++ ++ K+ +
Sbjct  464  LLWRLWPQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAER  523

Query  454  gtkVSVRMVKAPGFGPKGVLRCILPFTIFLKLKDIGGNVLPPYDEEFREVAMDTAQAAAY  513
                SVR  KAPGF+P G++R +LP+T+FLKL+D+G  VLP Y E FR V M   Q A Y
Sbjct  524  N---SVRTAKAPGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVY  580

Query  514  RDLAGRLTAELKQALARRDTTllgvvlnvllAWPDCCFRSETVVHPRTRNTLAFVPAQFN  573
            +++ + L  +LK AL  RD TL GVV++ LL+WPDCC++++ V   R  + L    +QF+
Sbjct  581  KNMESVLRQHLKVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFD  640

Query  574  EFEISPKERELIDICKEEKAQGRKVLAYTVYTGTRDTTSRLKVLLEQEGFKVAVLRASVD  633
            E EISPKE +++++ K+  A+GRK L YTVYT+TRDTT+RLK ++ ++G+K AV++A+V 
Sbjct  641  EEEISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVK  700

Query  634  ASRREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYSLQQAARRSWRI  693
            A +REDW+ +QL  G++V+I NPELVKTGLDLL FPTI F+Q+GYNVY+L QAARRSWRI
Sbjct  701  ADQREDWVEDQLASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRI  760

Query  694  GQKQPVRVIYLGYAGSSQMTCLELMAKKIMVSQSTSGDVPESGLDVLNQDGDSVEVALAR  753
            GQK+ V V + GY++++Q  CLELM++K+ V+QSTSGD+P+SGLD+LNQ  +SVEV LA+
Sbjct  761  GQKEDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAK  820

Query  754  QLVA  757
            ++V 
Sbjct  821  RFVD  824

43) NH44784_008681 in NC_021285


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  607 bits (2292),  Expect = 9e-175, Method: Compositional matrix adjust.
 Identities = 387/784 (50%), Positives = 551/784 (71%), Gaps = 33/784 (4%)

Query  4    DLETTAAEAAPVQGELLDAESSPLTLSLQDFVGEFGDELLDALNSANPPVYNGQPQAHRQ  63
            +    ++EAA +  E  ++E +   ++L +F++EFGD L++A+   N PVY+GQ  +  +
Sbjct  45   ETAQKSTEAAVLPEESPETELPDSDIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLE  104

Query  64   LVVASLKRKLFPAQAEVVHAAAELLIDRGERAAIVNGEMGCGKTTVGIATAAVLNAEGYR  123
             V+ +L R LF+AQ EVV+A  + L+  +  AAI+N+EMG GKT +++A+AA  +  G +
Sbjct  105  EVLDNLERPLFAAQREVVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLH  164

Query  124  RTLVLSPPHLVYKWRREIQETVAGAKVWVLNGPDTLVKLIKLREQLNVQSTGQEFFVLGR  183
            RTLVLSPPHLVYKWRREI  TV+ A+VW+LNG+DTL KL+++R  L+ ++   EFFV+GR
Sbjct  165  RTLVLSPPHLVYKWRREILKTVPNARVWILNGADTLAKLLQIRA-LDRKPEVPEFFVMGR  223

Query  184  VRMRMGFHWKPVSTQRRTRHGNVAA----------CPDCGTVITDLDGEPVNP---VALQ  230
            VRMRMG+HW+P  + RR R  + +A          CP CG  I D +  P N    V   
Sbjct  224  VRMRMGYHWRPSYAVRRRRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNA  283

Query  231  AEEYRRKCS------HCAAPLWTLIRPRSLSGSDQSST---VLKALKRIPTIGEVTAQKL  281
                RR C        C  PLWTL R     ++  S+    VLK++  +P IG  TA K+
Sbjct  284  LAKNRRFCKGNHHGKPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKI  343

Query  282  MQKFGDGFLASMLGDNIHEFINLMDSNGDLVFSDRQATRMERAMANMEFGFGEGGYQPSE  341
            +  +G+ +LA +L +NI+ F NLMD NG+++F DRQA+R++R +++ EF++G GGYQP+E
Sbjct  344  IGMYGEQYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTE  403

Query  342  FIKRYLPQGTFDLCIADEAHEYKNGGSAQGQAMGVlaakarktllltgtlmggygDDLFY  401
            F+KRYLP+  F+L + DE+HEYKN G+AQGQAMGVLA    K L LTGTLMGGY++DLF+
Sbjct  404  FVKRYLPKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFF  463

Query  402  LLFRALPGRMIEDGYRPTTSGSMTSAAMAFMRDHGVLKDI-------YSEStgtahktak  454
            LL R  P  MIEDG+    + ++ SA+MAFMR HGVLKDI       YS+++ ++ K+ +
Sbjct  464  LLWRLWPQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAER  523

Query  455  gtkVSVRTVKAPGFGPKGVLRCILPFTIFLKLRDIGGNVLPPYDEEFREVAMDTAQAAAY  514
                SVRT KAPGF+P G++R +LP+T+FLKLRD+G  VLP Y E FR V M   Q A Y
Sbjct  524  N---SVRTAKAPGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVY  580

Query  515  RDLAGRLTAELKQALARRDTTllgvvlnvllAWPDCCFRSETVVHPRTRNTLAFIPAQFN  574
            +++ + L  +LK AL  RD TL GVV++ LL+WPDCC++++ V   R  + L    +QF+
Sbjct  581  KNMESVLRQHLKVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFD  640

Query  575  EFEVTPKERELIDICKEEKAHGRKVLAYTVYTGTRDTTSRLKMLLEQEGFRVAVLRASVD  634
            E E++PKE +++++ K+  A GRK L YTVYT+TRDTT+RLK ++ ++G++ AV++A+V 
Sbjct  641  EEEISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVK  700

Query  635  ASRREDWIAEQLDRGIDVLITNPELVKTGLDLLDFPTIVFMQSGYNVYSLQQAARRSWRI  694
            A +REDW+ +QL  G++V+I NPELVKTGLDLL FPTI F+Q+GYNVY+L QAARRSWRI
Sbjct  701  ADQREDWVEDQLASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRI  760

Query  695  GQKQPVRVIYLGYAGSSQMTCLELMAKKIMVSQSTSGDVPESGLDVLNQDGDSVEVALAR  754
            GQK+ V V + GY++++Q  CLELM++K+ V+QSTSGD+P+SGLD+LNQ  +SVEV LA+
Sbjct  761  GQKEDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAK  820

Query  755  QLVA  758
            ++V 
Sbjct  821  RFVD  824

44) Alide2_1759 in NC_015422


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  606 bits (2291),  Expect = 1e-174, Method: Compositional matrix adjust.
 Identities = 390/782 (50%), Positives = 547/782 (70%), Gaps = 38/782 (4%)

Query  4    DLETVPETAVQGDLLETAASPLTLSLQDFVSEFGDELLDSLNRANPPVYTGQVRVHRQLI  63
            +   +PE + + +L ++      ++L +F++EFGD L++++   N PVY GQ     + +
Sbjct  52   EAAVLPEESPETELPDSD-----IPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLEEV  106

Query  64   LAALMRKLFPAQADVVHAVTELLVDRGERAAIVNGEMGCGKTTVGIATAAVLNAEGYRRT  123
            L  L R LF+AQ +VV+AV + LV  +  AAI+N+EMG GKT +++A+AA  +  G +RT
Sbjct  107  LDNLERPLFAAQREVVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLHRT  166

Query  124  LVLSPPHLVYKWRREIQETVAGAKVWVLNGPDTLVKLLKLREQLGVPAQGQEFFVLGRVR  183
            LVLSPPHLVYKWRREI  TV+ A+VW+LNG+DTL KLL++R  L+  ++  EFFV+GRVR
Sbjct  167  LVLSPPHLVYKWRREILKTVPNARVWILNGADTLAKLLQIRA-LDRKPEVPEFFVMGRVR  225

Query  184  MRMGFHWKPVFV--RRRTPHGDVGA--------CPDCGHVITDLDGEPINP---VELEAE  230
            MRMG+HW+P +   RRR P  + +         CP CG  I D +  P N    V     
Sbjct  226  MRMGYHWRPSYAVRRRRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNALA  285

Query  231  ESRRKCS------HCRAPLWSLIRPRGLSASDQSST---VLKALKRIPTIGEVTAQKLMQ  281
             +RR C        C+ PLW+L R      +  S+    VLK++  +P IG  TA K++ 
Sbjct  286  KNRRFCKGNHHGKPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKIIG  345

Query  282  KFGDAFLASMLGDNIHEFINLMDGNGELVFSDRQAHRMERAMANMEFGFGEGGYQPSEFI  341
             +G+ +LA +L +NI+ F NLMD NGE++F DRQA R++R +++ EF++G GGYQP+EF+
Sbjct  346  MYGEQYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTEFV  405

Query  342  KRQLPQGTFDLLIADEAHEYKNGGSAQGQAMGVlaakarktllltgtlmggygDDLFHLL  401
            KR LP+  F+LL+ DE+HEYKN G+AQGQAMGVLA    K L LTGTLMGGY++DLF LL
Sbjct  406  KRYLPKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFFLL  465

Query  402  FRALPGRMIEDGYRPTKSGSMTSAAMAFMRDHGVLKDI-------YSEStgtahktakgt  454
             R  P  MIEDG+   K+ ++ SA+MAFMR HGVLKDI       YS+++ ++ K+ +  
Sbjct  466  WRLWPQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAERN-  524

Query  455  kVSVRTVKAPGFGPKGVLRCVLPFTVFLKLKDIGGNVLPPYDEEFREVAMDTAQAAAYRD  514
              SVRT KAPGF+P G++R VLP+TVFLKL+D+G  VLP Y E FR V M   Q A Y++
Sbjct  525  --SVRTAKAPGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKN  582

Query  515  LAGRLTQELKQALAKRDTTllgvvlnvllAWPDCCFRSETVVHPRTRNTLAFVPAQFNEL  574
            + + L Q+LK AL +RD TL GVV++ LL+WPDCC++++ V   R  + L    +QF+E 
Sbjct  583  MESVLRQHLKVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEE  642

Query  575  ELMPKERELIEICKQEKAEGRKTLVYSVYTGTRDTTSRLKVLLEQEGFKVAVLRASVDAS  634
            E+ PKE +++E+ K+  A GRK LVY+VYT+TRDTT+RLK ++ ++G+K AV++A+V A 
Sbjct  643  EISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKAD  702

Query  635  RREDWIAEQLDRCIDVLITNPELVKTGLDLLEFPTIVFLQSGYNVYSLQQAARRSWRIGQ  694
            +REDW+ +QL   ++V+I NPELVKTGLDLL FPTI FLQ+GYNVY+L QAARRSWRIGQ
Sbjct  703  QREDWVEDQLASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQ  762

Query  695  KQPVRVIYLGYANSSQMTCLGLMARKIMVSQSTSGDEPESGLDVLNQDGDSVEVALARQL  754
            K+ V V + GY++++Q  CL LM++K+ V+QSTSGD P+SGLD+LNQ  +SVEV LA+++
Sbjct  763  KEDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAKRF  822

Query  755  VH  756
            V+
Sbjct  823  VD  824

45) Bxe_A1202 in NC_007951


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  606 bits (2288),  Expect = 2e-174, Method: Compositional matrix adjust.
 Identities = 385/781 (50%), Positives = 551/781 (71%), Gaps = 27/781 (3%)

Query  13   DLETTTAEATSVQGELLDAESSPLTLSLQDFVGEFGDELLDALNSANPPVYSGEPQAHRQ  72
            +    ++EA+ +  E  ++E +   ++L +F++EFGD L++A+   N PVY G+  +  +
Sbjct  45   ETAQKSTEAAVLPEESPETELPDSDIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLE  104

Query  73   LIVASLKRKLFqaqaevvhaaaellIDRGERAAIVNGEMGCGKTTVGIATAAVLNAEGYR  132
             ++ +L R LF AQ EVV+A  + L+  +  AAI+N+EMG GKT +++A+AA  +  G +
Sbjct  105  EVLDNLERPLFAAQREVVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLH  164

Query  133  RTLVLSPPHLVYKWRREIQETVAGAKVWVLNGPDTLVKLIKLREQMGVQPTGQEFFVLGR  192
            RTLVLSPPHLVYKWRREI  TV+ A+VW+LNG+DTL KL+++R  ++ +P   EFFV+GR
Sbjct  165  RTLVLSPPHLVYKWRREILKTVPNARVWILNGADTLAKLLQIRA-LDRKPEVPEFFVMGR  223

Query  193  VRMRMGFHWKPVFTTRRTRHGDVAA----------CPDCGTVITDLDGEPVNP---VALQ  239
            VRMRMG+HW+P ++ RR R    +A          CP CG  I D +  P N    V   
Sbjct  224  VRMRMGYHWRPSYAVRRRRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNA  283

Query  240  AEEYRRKCS------HCAAPLWTLIRPRSLSGSDQSSA---VLKALKRIPTIGEVTAQKL  290
                RR C        C  PLWTL R     ++  S+    VLK++  +P IG  TA K+
Sbjct  284  LAKNRRFCKGNHHGKPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKI  343

Query  291  MQKFGDGFLASMLGDNIHEFINLMDGNGELVFSDRQATRMERAMANMEFGFGEGGYQPSE  350
            +  +G+ +LA +L +NI+ F NLMD NGE++F DRQA+R++R +++ EF++G GGYQP+E
Sbjct  344  IGMYGEQYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTE  403

Query  351  FIKRYLPQGTFDLLIADEAHEYKNGGSAQGQAMGVlaakarktllltgtlmggygDDLFY  410
            F+KRYLP+  F+LL+ DE+HEYKN G+AQGQAMGVLA    K L LTGTLMGGY++DLF+
Sbjct  404  FVKRYLPKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFF  463

Query  411  LLFRALPGRMIEDGYRPTTSGSMTSAAMAFMRDHGVLKDIY----SESAGTAHKTARGTK  466
            LL R  P  MIEDG+    + ++ SA+MAFMR HGVLKDI     +E +  A  ++++ +
Sbjct  464  LLWRLWPQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAER  523

Query  467  VSVRTVKAPGFGPKGVLRCILPFTIFLKLKDIGGNVLPPYDEQFREVQMDVAQAAAYRDL  526
             SVRT KAPGF+P G++R +LP+T+FLKL+D+G  VLP Y E FR V+M   Q A Y+++
Sbjct  524  NSVRTAKAPGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKNM  583

Query  527  AGRLTAELKQALARRDTTllgvvlnvllAWPDCCFRSETVVHPRTRNTLAFVPAQFNEFE  586
             + L  +LK AL  RD TL GVV++ LL+WPDCC++++ V   R  + L    +QF+E E
Sbjct  584  ESVLRQHLKVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEEE  643

Query  587  VTPKERELIDICKEEKAQGRKVLAYTVYTGTRDTTSRLKMLLEQEGFKVAVLRASVDASR  646
            ++PKE +++++ K+  A+GRK L YTVYT+TRDTT+RLK ++ ++G+K AV++A+V A +
Sbjct  644  ISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKADQ  703

Query  647  REDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYSLQQAARRSWRIGQK  706
            REDW+ +QL  G++V+I NPELVKTGLDLL FPTI F+Q+GYNVY+L QAARRSWRIGQK
Sbjct  704  REDWVEDQLASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQK  763

Query  707  LHVRVIYLGYAGSSQMTCLELMAKKIMVSQSTSGDVPESGLDVLNQDGDSVEVALARQLV  766
             +V V + GY++++Q  CLELM++K+ V+QSTSGD+P+SGLD+LNQ  +SVEV LA+++V
Sbjct  764  EDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAKRFV  823

Query  767  A  767
             
Sbjct  824  D  824

46) Tola_2424 in NC_012691


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  605 bits (2285),  Expect = 3e-174, Method: Compositional matrix adjust.
 Identities = 378/783 (49%), Positives = 556/783 (72%), Gaps = 31/783 (3%)

Query  8    APAAPSMPATGDLFKPADSESDLS---FSLQDFVTEFGDELLDSLNRANPPVYNGVPRAN  64
             + ++  ++ + ++    +E++L+   ++L +F++EFGD L++++   N PVY+G   + 
Sbjct  43   VAETAQKSTEAAVLPEESPETELPDSDIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPL  102

Query  65   RQLVLASLKRQLFPaqaevvhaaaellvNQGERAAIVNGEMGTGKTTVGIALGAVLNAEG  124
             + VL +L R LF+AQ EVV+A  + LV ++  AAI+N+EMGTGKT +++A +A  +  G
Sbjct  103  LEEVLDNLERPLFAAQREVVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAG  162

Query  125  YRRTLVLSPPHLVYKWRREILETVAGAKVWVLNGPDTLLKLIKLREQLNVPAEGQEFFII  184
             +RTLVLSPPHLVYKWRREIL TV+ A+VW+LNG+DTL KL+++R  L+  +E  EFF++
Sbjct  163  LHRTLVLSPPHLVYKWRREILKTVPNARVWILNGADTLAKLLQIRA-LDRKPEVPEFFVM  221

Query  185  GRVRMRMGFHWKPAFVRKHTRYGMVGA----------CPHCGTVVTDLDGEPVNA---LE  231
            GRVRMRMG+HW+P++  ++ R    GA          CP CG  + D +  P N+   + 
Sbjct  222  GRVRMRMGYHWRPSYAVRRRRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVK  281

Query  232  LEAEEIRRKCN------VCDGALWTLMRPRSLSGSDQSSA---VLRALKRIPTIGEATAN  282
                  RR C+       C  +LWTL R     ++  S+    VL+++  +P IG  TA 
Sbjct  282  NALAKNRRFCKGNHHGKPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAA  341

Query  283  KLMKTFGDSFLASMLGDNLHNFINLMDERGELVFSDRQAQRMERAMSSMEFGFGEGGYQP  342
            K++  +G+ +LA +L +N++ F NLMDE GE++F DRQA R++R ++  EF++G GGYQP
Sbjct  342  KIIGMYGEQYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQP  401

Query  343  SEYVKRYLPQSTFDLLIADEAHEYKTGGSAQGQAMGVIAAKARKTVLLTGTLMGGYADDL  402
            +E+VKRYLP++ F+LL+ DE+HEYK  G+AQGQAMGV+A    K + LTGTLMGGYA+DL
Sbjct  402  TEFVKRYLPKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDL  461

Query  403  FHLLFRALPARMIEDGYRPsasgsmnaaamafmRDHGVLKDIY----SESNGPAHKTAKG  458
            F LL R  P  MIEDG+  + + ++ +A+MAFMR HGVLKDI     +E +  A  ++K+
Sbjct  462  FFLLWRLWPQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKA  521

Query  459  SKITVRTVKAPGFGPKGVLRCVLPYTIFLKLRDIG-GVLPPYDEEFREVAMDAGQADAYR  517
             + +VRT KAPGF+P G++R VLP T+FLKLRD+G GVLP Y E FR V M  +Q   Y+
Sbjct  522  ERNSVRTAKAPGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYK  581

Query  518  NLAASLTAELKEALRKRDTTllgvvlnvllAWSDCCFRAETVRHPRTRQVLAFTPAQFNE  577
            N+ + L  +LK ALR+RD TL GVV++ LL+W+DCC++++ V   R  ++L  T +QF+E
Sbjct  582  NMESVLRQHLKVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDE  641

Query  578  LEIMPKERELIDICREEKAAGRKTLVYSVYTGTRDTTSRLKMLLEQEGFRVAVLRASVDA  637
             EI PKE +++++ ++  A GRK LVY+VYT+TRDTT+RLK ++ ++G++ AV++A+V A
Sbjct  642  EEISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKA  701

Query  638  SRREDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGWNIYTLQQAARRSWRIG  697
             +REDW+ +QL  G++V+I NPELVKTGLDLL FPTI F+Q+G N+YTL QAARRSWRIG
Sbjct  702  DQREDWVEDQLASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIG  761

Query  698  QKQHVKVIYLGYAATSQMTCLALMAKKILVSQSTSGDVPESGLDVLNQDGDSIEVALARQ  757
            QK++V V + GY+ T+Q  CL LM++K+ V+QSTSGD+P+SGLD+LNQ  +S+EV LA++
Sbjct  762  QKEDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAKR  821

Query  758  LVA  760
            +V 
Sbjct  822  FVD  824

47) Alide2_1905 in NC_015422


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  603 bits (2277),  Expect = 1e-173, Method: Compositional matrix adjust.
 Identities = 389/780 (50%), Positives = 545/780 (70%), Gaps = 35/780 (4%)

Query  10   AAHGTPIQGDLLEAAASPLAMSLQDFVAEFGDELLDSLNRANPPVYTGQARPHRQLVLAS  69
            +++++ +  +  E+  +   ++L +F+AEFGD L++++   N PVY GQ+ P  + VL +
Sbjct  50   STEAAVLPEESPETELPDSDIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLEEVLDN  109

Query  70   LKRKLFGAQAEVVHAVTELLADRGERAAIVNGEMGCGKTTVGIATAAVLHAEGYRRTLVL  129
            L R LF+AQ EVV+AV + L   +  AAI+N+EMG GKT +++A+AA  H  G +RTLVL
Sbjct  110  LERPLFAAQREVVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLHRTLVL  169

Query  130  SPPHLVYKWRREIQETVAGAKVWVLNGPDTLVKLIKLREQLGVPVRGQEFYVLGRVRMRM  189
            SPPHLVYKWRREI  TV+ A+VW+LNG+DTL KL+++R  L+      EF+V+GRVRMRM
Sbjct  170  SPPHLVYKWRREILKTVPNARVWILNGADTLAKLLQIRA-LDRKPEVPEFFVMGRVRMRM  228

Query  190  GFHWKPVFNVRHTKHGEVGA----------CPDCGQVITNLDGEPINP---VELEAEDYR  236
            G+HW+P + VR+ +    GA          CP CG  I + +  P N    V       R
Sbjct  229  GYHWRPSYAVRRRRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNALAKNR  288

Query  237  RRCS------HCAAPLWTLMRPRSLSASDQSTAVF----KALQRIPTIGEVTAQKLMKKF  286
            R C        C  PLWTL R +  S  +  ++V+    K++  +P IG  TA K++  +
Sbjct  289  RFCKGNHHGKPCKEPLWTLCR-KEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKIIGMY  347

Query  287  GDGFLASMLGDNIHEFINLMDAKGELVFSDRQAHRMERAMANMEFSFGEGGYQPSEFVKR  346
            G+ +LA +L +NI+ F NLMD +GE++F DRQA R++R +++ EFS+G GGYQP+EFVKR
Sbjct  348  GEQYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTEFVKR  407

Query  347  YLPQGTFDLLIADEAHEYKNGGSAQGQAMGVlaakarktllltgtlmggygDDLFHLLFR  406
            YLP+  F+LL+ DE+HEYKN G+AQGQAMGVLA    K L LTGTLMGGY++DLF LL R
Sbjct  408  YLPKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFFLLWR  467

Query  407  ALPGRMIEDGYRPTKSGSMTSAAMAFMRDHGILKDI-------YSEStgtahktakgtkV  459
              P  MIEDG+   K+ ++ SA+MAFMR HG+LKDI       YS+++ ++ K+ +    
Sbjct  468  LWPQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAERN---  524

Query  460  SVRTVKAPGFGPKGVLRCVLPFTVFLKLKDIGGNVLPSYDEEFREVAMDTAQAAAYRDLS  519
            SVRT KAPGF+P G++R VLP+TVFLKL+D+G  VLP+Y E FR V M   Q A Y+++ 
Sbjct  525  SVRTAKAPGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKNME  584

Query  520  FRLTSALKQALAKRDTTllgvvlnvllAWPDCCFRSETVVHPRTRQTLAFVPAQFNELEV  579
              L   LK AL +RD TL GVV++ LL+WPDCC++++ V   R  + L    +QF+E E+
Sbjct  585  SVLRQHLKVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEEEI  644

Query  580  MPKERELIEICKQEKAAGRKTLVYSVYTGTRDTTSRLKVLLEQEGFKVAVLRASVDASRR  639
             PKE +++E+ K+  A GRK LVY+VYT+TRDTT+RLK ++ ++G+K AV++A+V A +R
Sbjct  645  SPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKADQR  704

Query  640  EDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYSLQQAARRSWRIGQKL  699
            EDW+ +QL  G++V+I NPELVKTGLDLL FPTI F+Q+GYNVY+L QAARRSWRIGQK 
Sbjct  705  EDWVEDQLASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQKE  764

Query  700  PVRVIYLGYTASSQMTCLGLMARKIMVSQSTSGDVPESGLDVLNQDGDSVEVALARQLVA  759
             V V + GY+ ++Q  CL LM++K+ V+QSTSGD+P+SGLD+LNQ  +SVEV LA+++V 
Sbjct  765  DVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAKRFVD  824

48) XCAW_01672 in NC_020815


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  603 bits (2279),  Expect = 9e-174, Method: Compositional matrix adjust.
 Identities = 387/781 (50%), Positives = 548/781 (71%), Gaps = 27/781 (3%)

Query  4    DLESTAAQATPVQSELLDAESSPLTLSLQDFVGEFGDELLDSLNRANPPVYTGQPQTRRQ  63
            +    +++A+ +  E  ++E +   ++L +F++EFGD L++++   N PVY GQ     +
Sbjct  45   ETAQKSTEAAVLPEESPETELPDSDIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLE  104

Query  64   LIVASLKRKLFeaqaevvhaaaeLLIDRGERAAIVNGEMGCGKTTVGIATAAVLNAEGYR  123
             ++ +L R LF AQ EVV+A  + L+  +  AAI+N+EMG GKT +++A+AA  +  G +
Sbjct  105  EVLDNLERPLFAAQREVVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLH  164

Query  124  RTLVLSPPHLVYKWRREIQETVAGARVWVLNGPDTLVKLIKLREQLGVQPTGQEFFVLGR  183
            RTLVLSPPHLVYKWRREI  TV+ ARVW+LNG+DTL KL+++R  L+ +P   EFFV+GR
Sbjct  165  RTLVLSPPHLVYKWRREILKTVPNARVWILNGADTLAKLLQIRA-LDRKPEVPEFFVMGR  223

Query  184  VRMRMGFHWRSVFTRRRTRHGDVAA----------CPDCGHVITDLDGEPVNP---IELD  230
            VRMRMG+HWR+ ++ RR R    +A          CP CG  I D +  P N    +   
Sbjct  224  VRMRMGYHWRPSYAVRRRRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNA  283

Query  231  AEEYRRKCS------HCAAPLWTLTRPRSLSGSDQSSA---VLKALKRIPTIGEVTAQKL  281
                RR C        C  PLWTL R     ++  S+    VLK++  +P IG  TA K+
Sbjct  284  LAKNRRFCKGNHHGKPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKI  343

Query  282  MKRFGDGFLASMLGDNVHEFINLMDGNGELVFSDRQATRMERAMANMEFGFGEGGYQPSE  341
            +  +G+ +LA +L +N++ F NLMD NGE++F DRQA+R++R +++ EF++G GGYQP+E
Sbjct  344  IGMYGEQYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTE  403

Query  342  FIKRYLPQGTFDLLIADEAHEYKNGGSAQGQAMGVLAAKSRKtllltgtlmggygDDLFY  401
            F+KRYLP+  F+LL+ DE+HEYKN G+AQGQAMGVLA    K L LTGTLMGGY++DLF+
Sbjct  404  FVKRYLPKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFF  463

Query  402  LLFRALPGRMIEDGYRPTTSGsmasaamaFMRDHGVLKDIY----SESTGTAHKTAKGSK  457
            LL R  P  MIEDG+    + +++SA+MAFMR HGVLKDI     +E +  A  ++K+ +
Sbjct  464  LLWRLWPQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAER  523

Query  458  VSVRTVKAPGFGPKGVLRCILPFTVFLKLKDIGGNVLPPYDEEFREVAMDTAQVAAYRDL  517
             SVRT KAPGF+P G++R +LP+TVFLKL+D+G  VLP Y E FR V M   Q A Y+++
Sbjct  524  NSVRTAKAPGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKNM  583

Query  518  AGRLTAELKQALARRDTTllgvvlnvllAWPDCCFRSETVLHPRTRDTLAFVPAQFHEFE  577
             + L  +LK AL  RD TL GVV++ LL+WPDCC++++ V   R    L    +QF+E E
Sbjct  584  ESVLRQHLKVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEEE  643

Query  578  ITPKERELIDICKQEKAQGRKVLTYTVYTGKRDTTSRLKVLLEQEGFKVAVLRASVDASR  637
            I+PKE +++++ K+  A+GRK L YTVYT+ RDTT+RLK ++ ++G+K AV++A+V A +
Sbjct  644  ISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKADQ  703

Query  638  REDWIAEQLDRGIDVLITNPELVKTGLDLLDFPTIVFMQSGYNVYSLQQAARRSWRIGQK  697
            REDW+ +QL  G++V+I NPELVKTGLDLL FPTI F+Q+GYNVY+L QAARRSWRIGQK
Sbjct  704  REDWVEDQLASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQK  763

Query  698  EPVRVIYLGYAGSSQMTCLELMAKKIMVSQSTSGDVPESGLDVLNQDGDSVEVALARQLV  757
            E V V + GY++++Q  CLELM++K+ V+QSTSGD+P+SGLD+LNQ  +SVEV LA+++V
Sbjct  764  EDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAKRFV  823

Query  758  A  758
             
Sbjct  824  D  824

49) NH44784_010641 in NC_021285


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  600 bits (2268),  Expect = 6e-173, Method: Compositional matrix adjust.
 Identities = 391/780 (51%), Positives = 549/780 (71%), Gaps = 27/780 (3%)

Query  4    DLENTTAEATPVQGELLDAESNPLTLSLQDFVGEFGDELLDALNSANPPVYTGQPQAHRQ  63
            +  + ++EA+ +  E  ++E     ++L +F++EFGD L++A+   N PVY GQ  +  +
Sbjct  45   ETAQKSTEAAVLPEESPETELPDSDIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLE  104

Query  64   LVVASLKRKLFqaqaevvhaaaellIDRGEHAAIVNGEMGCGKTTVGIATAAVLNAEGYR  123
             V+ +L R LF AQ EVV+A  + L+  +  AAI+N+EMG GKT +++A+AA  +  G +
Sbjct  105  EVLDNLERPLFAAQREVVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLH  164

Query  124  RTLVLSPPHLVYKWRREIQETVAGAKVWVLNGPDTLVKLIKLREQLGVQPTGQEFFVLGR  183
            RTLVLSPPHLVYKWRREI  TV+ A+VW+LNG+DTL KL+++R  L+ +P   EFFV+GR
Sbjct  165  RTLVLSPPHLVYKWRREILKTVPNARVWILNGADTLAKLLQIRA-LDRKPEVPEFFVMGR  223

Query  184  VRMRMGFHWKPVFTTRRTRHGDVAA----------CPDCGTVITDLDGEPVNP---VALE  230
            VRMRMG+HW+P ++ RR R    +A          CP CG  I D +  P N    V   
Sbjct  224  VRMRMGYHWRPSYAVRRRRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNA  283

Query  231  AEEYRRKCS------HCAAPLWTLIRPRSLSGSDQSSA---VLKALKRIPTIGEVTAQKL  281
                RR C        C  PLWTL R     ++  S+    VLK++  +P IG  TA K+
Sbjct  284  LAKNRRFCKGNHHGKPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKI  343

Query  282  MQKFGDGFLASMLGDNIHEFINLMDGNGELVFSDRQATRMERAMANMEFGFGEGGYQPSE  341
            +  +G+ +LA +L +NI+ F NLMD NGE++F DRQA+R++R +++ EF++G GGYQP+E
Sbjct  344  IGMYGEQYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTE  403

Query  342  FIKRYLPQGTFDLLIADEAHEYKNGGSAQGQAMGVlaakarktllltgtlmggygDDLFY  401
            F+KRYLP+  F+LL+ DE+HEYKN G+AQGQAMGVLA    K L LTGTLMGGY++DLF+
Sbjct  404  FVKRYLPKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFF  463

Query  402  LLFRALPGRMIEDGYRPTTSGSMTSAAMAFMRDHGVLKDIY----SEStgtahktakgtk  457
            LL R  P  MIEDG+    + ++ SA+MAFMR HGVLKDI     +E +  A  ++K+ +
Sbjct  464  LLWRLWPQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAER  523

Query  458  VSVRTVKAPGFGPKGVLRCILPFTIFLKLRDIGGNVLPPYDEEFREVAMDTAQAAAYRDL  517
             SVRT KAPGF+P G++R +LP+T+FLKLRD+G  VLP Y E FR V M   Q A Y+++
Sbjct  524  NSVRTAKAPGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKNM  583

Query  518  AGRLTAELKQALARRDTTllgvvlnvllAWPDCCFRSETVVHPRTRNTLAFVPAQFNEFE  577
             + L  +LK AL  RD TL GVV++ LL+WPDCC++++ V   R  + L    +QF+E E
Sbjct  584  ESVLRQHLKVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEEE  643

Query  578  ISPKERELIDICREEKAQGRKVLAYTVYTGTRDTTSRLKVLLEQEGFKVAVLRASVDASR  637
            ISPKE +++++ ++  A+GRK L YTVYT+TRDTT+RLK ++ ++G+K AV++A+V A +
Sbjct  644  ISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKADQ  703

Query  638  REDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYSLQQAARRSWRIGQK  697
            REDW+ +QL  G++V+I NPELVKTGLDLL FPTI F+Q+GYNVY+L QAARRSWRIGQK
Sbjct  704  REDWVEDQLASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQK  763

Query  698  LSVRVIYLGYAGSSQMTCLELMAKKIMVSQSTSGDVPESGLDVLNQDGDSVEVALARQLV  757
              V V + GY++++Q  CLELM++K+ V+QSTSGD+P+SGLD+LNQ  +SVEV LA+++V
Sbjct  764  EDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAKRFV  823

50) HEAR1996 in NC_009138


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  600 bits (2268),  Expect = 6e-173, Method: Compositional matrix adjust.
 Identities = 391/780 (51%), Positives = 549/780 (71%), Gaps = 27/780 (3%)

Query  4    DLENTTAEATPVQGELLDAESNPLTLSLQDFVGEFGDELLDALNSANPPVYTGQPQAHRQ  63
            +  + ++EA+ +  E  ++E     ++L +F++EFGD L++A+   N PVY GQ  +  +
Sbjct  45   ETAQKSTEAAVLPEESPETELPDSDIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLE  104

Query  64   LVVASLKRKLFqaqaevvhaaaellIDRGEHAAIVNGEMGCGKTTVGIATAAVLNAEGYR  123
             V+ +L R LF AQ EVV+A  + L+  +  AAI+N+EMG GKT +++A+AA  +  G +
Sbjct  105  EVLDNLERPLFAAQREVVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLH  164

Query  124  RTLVLSPPHLVYKWRREIQETVAGAKVWVLNGPDTLVKLIKLREQLGVQPTGQEFFVLGR  183
            RTLVLSPPHLVYKWRREI  TV+ A+VW+LNG+DTL KL+++R  L+ +P   EFFV+GR
Sbjct  165  RTLVLSPPHLVYKWRREILKTVPNARVWILNGADTLAKLLQIRA-LDRKPEVPEFFVMGR  223

Query  184  VRMRMGFHWKPVFTTRRTRHGDVAA----------CPDCGTVITDLDGEPVNP---VALE  230
            VRMRMG+HW+P ++ RR R    +A          CP CG  I D +  P N    V   
Sbjct  224  VRMRMGYHWRPSYAVRRRRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNA  283

Query  231  AEEYRRKCS------HCAAPLWTLIRPRSLSGSDQSSA---VLKALKRIPTIGEVTAQKL  281
                RR C        C  PLWTL R     ++  S+    VLK++  +P IG  TA K+
Sbjct  284  LAKNRRFCKGNHHGKPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKI  343

Query  282  MQKFGDGFLASMLGDNIHEFINLMDGNGELVFSDRQATRMERAMANMEFGFGEGGYQPSE  341
            +  +G+ +LA +L +NI+ F NLMD NGE++F DRQA+R++R +++ EF++G GGYQP+E
Sbjct  344  IGMYGEQYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTE  403

Query  342  FIKRYLPQGTFDLLIADEAHEYKNGGSAQGQAMGVlaakarktllltgtlmggygDDLFY  401
            F+KRYLP+  F+LL+ DE+HEYKN G+AQGQAMGVLA    K L LTGTLMGGY++DLF+
Sbjct  404  FVKRYLPKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFF  463

Query  402  LLFRALPGRMIEDGYRPTTSGSMTSAAMAFMRDHGVLKDIY----SEStgtahktakgtk  457
            LL R  P  MIEDG+    + ++ SA+MAFMR HGVLKDI     +E +  A  ++K+ +
Sbjct  464  LLWRLWPQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAER  523

Query  458  VSVRTVKAPGFGPKGVLRCILPFTIFLKLRDIGGNVLPPYDEEFREVAMDTAQAAAYRDL  517
             SVRT KAPGF+P G++R +LP+T+FLKLRD+G  VLP Y E FR V M   Q A Y+++
Sbjct  524  NSVRTAKAPGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKNM  583

Query  518  AGRLTAELKQALARRDTTllgvvlnvllAWPDCCFRSETVVHPRTRNTLAFVPAQFNEFE  577
             + L  +LK AL  RD TL GVV++ LL+WPDCC++++ V   R  + L    +QF+E E
Sbjct  584  ESVLRQHLKVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEEE  643

Query  578  ISPKERELIDICREEKAQGRKVLAYTVYTGTRDTTSRLKVLLEQEGFKVAVLRASVDASR  637
            ISPKE +++++ ++  A+GRK L YTVYT+TRDTT+RLK ++ ++G+K AV++A+V A +
Sbjct  644  ISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKADQ  703

Query  638  REDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYSLQQAARRSWRIGQK  697
            REDW+ +QL  G++V+I NPELVKTGLDLL FPTI F+Q+GYNVY+L QAARRSWRIGQK
Sbjct  704  REDWVEDQLASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQK  763

Query  698  LSVRVIYLGYAGSSQMTCLELMAKKIMVSQSTSGDVPESGLDVLNQDGDSVEVALARQLV  757
              V V + GY++++Q  CLELM++K+ V+QSTSGD+P+SGLD+LNQ  +SVEV LA+++V
Sbjct  764  EDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAKRFV  823

51) Pecwa_1646 in NC_013421


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  591 bits (2231),  Expect = 5e-170, Method: Compositional matrix adjust.
 Identities = 377/767 (50%), Positives = 547/767 (72%), Gaps = 31/767 (4%)

Query  22   DPANDELS---ISLQDFVSEFGDELLDSLNRANPPVYNGVPRVNRQRILANLKRQLFlaq  78
            ++++ EL+   I+L +F++EFGD L++++   N PVY+G      + +L NL R LF AQ
Sbjct  59   ESPETELPDSDIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLEEVLDNLERPLFAAQ  118

Query  79   aevvhaaaellvNQGERAAIVNGEMGTGKTTVGIALAAVLNAEGYRRTLVLSPPHLVYKW  138
             EVV+A  + LV ++  AAI+N+EMGTGKT +++A AA  +  G +RTLVLSPPHLVYKW
Sbjct  119  REVVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLHRTLVLSPPHLVYKW  178

Query  139  RREILETVTGAKVWVLNGPDTLLKLIKLREQLNVPADGQEFFIIGRVRMRMGFHWKPAFV  198
            RREIL TV  A+VW+LNG+DTL KL+++R  L+  ++  EFF++GRVRMRMG+HW+P++ 
Sbjct  179  RREILKTVPNARVWILNGADTLAKLLQIRA-LDRKPEVPEFFVMGRVRMRMGYHWRPSYA  237

Query  199  RKHTRHGTVG----------LCPHCGTMVRNLDGEPVSALELDAEEVRRKCSFCES----  244
             ++ R  + G           CP CG  + + +  P ++     + + ++  FC +    
Sbjct  238  VRRRRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNALAKNRRFCKGNHHG  297

Query  245  -----ALWTLMRPRSLSGSDQSAA---VLRALKRIPTIGEATAAKLMKTFGDSFLASMLG  296
                 +LWTL R     ++  S+    VL+++  +P IG  TAAK++  +G+ +LA +L 
Sbjct  298  KPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKIIGMYGEQYLAEILE  357

Query  297  DNFHQFINLMDNRGELVFSDRQAQRMERAMSSMEFGFGEGGYQPSEFVKRYLPQSTFDLL  356
            +N++ F NLMD+ GE++F DRQA R++R ++  EF++G GGYQP+EFVKRYLP++ F+LL
Sbjct  358  NNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTEFVKRYLPKNFFGLL  417

Query  357  IADEAHEYKTGGSAQGQAMGVIAAKTRKtllltgtlmggYASDLFYLLFRALPRRMIEDG  416
            + DE+HEYK  G+AQGQAMGV+A    K L LTGTLMGGYA DLF+LL R  P+ MIEDG
Sbjct  418  VVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFFLLWRLWPQMMIEDG  477

Query  417  YRPsasgsmnaaamafmREHGVLKDIY----SESDGPSHKTAKGSKVTVRTVKAPGFGPK  472
            +  + + ++ +A+MAFMR HGVLKDI     +E    +  ++K+ + +VRT KAPGF+P 
Sbjct  478  FSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAERNSVRTAKAPGFSPL  537

Query  473  GVLRCVLPFTIFLKLRDIG-GVLPPYDEEFREVEMDAEQSDTYSKLAASLTTQLKEALRK  531
            G++R VLP+T+FLKLRD+G GVLP Y E FR VEM  +Q   Y ++ + L  +LK ALR+
Sbjct  538  GIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKNMESVLRQHLKVALRN  597

Query  532  RDTTllgvvlnvllAWSDCCFRTETVRHPRTREILAFTPAQFNELQVMPKERELIDICKQ  591
            RD TL GVV++ LL+W+DCC++ + V   R   IL  T +QF+E ++ PKE +++++ K+
Sbjct  598  RDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEEEISPKEADMLEVVKD  657

Query  592  EKAEGRKTLIYSVYTGTRDTTSRLKMLLEQEGFKVAVLRASVDASRREDWIAEQLDRGID  651
              A GRK L+Y+VYT+TRDTT+RLK ++ ++G+K AV++A+V A +REDW+ +QL  G++
Sbjct  658  SLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKADQREDWVEDQLASGVQ  717

Query  652  VLITNPELVKTGLDLLEFPTIVFMQSGYNVYTLQQAARRSWRIGQKQPVKVIYLGYTATS  711
            V+I NPELVKTGLDLL FPTI F+Q+GYNVYTL QAARRSWRIGQK+ V V + GY+ T+
Sbjct  718  VVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQKEDVEVYFAGYSDTA  777

Query  712  QMTCLALMAKKILVSQSTSGDVPESGLDVLNQDGDSIEVALARQLVA  758
            Q  CL LM++K+ V+QSTSGD+P+SGLD+LNQ  +S+EV LA+++V 
Sbjct  778  QQICLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAKRFVD  824

52) xccb100_2433 in NC_010688


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  591 bits (2231),  Expect = 6e-170, Method: Compositional matrix adjust.
 Identities = 385/780 (50%), Positives = 547/780 (71%), Gaps = 27/780 (3%)

Query  4    DLESTAAQATPVQSELLDAESSPLTLSLQDFVGEFGDELLDSLNRANPPVYTGQPQTRRQ  63
            +    +++A+ +  E  ++E +   ++L +F++EFGD L++++   N PVY GQ     +
Sbjct  45   ETAQKSTEAAVLPEESPETELPDSDIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLE  104

Query  64   LIVASLKRKLFeaqaevvhaaaeLLIDRGERAAIVNGEMGCGKTTVGIATAAVLNAEGYR  123
             ++ +L R LF AQ EVV+A  + L+  +  AAI+N+EMG GKT +++A+AA  +  G +
Sbjct  105  EVLDNLERPLFAAQREVVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLH  164

Query  124  RTLVLSPPHLVYKWRREIQETVAGAKVWVLNGPDTLVKLIKLREQLGVQPTGQEFFVLGR  183
            RTLVLSPPHLVYKWRREI  TV+ A+VW+LNG+DTL KL+++R  L+ +P   EFFV+GR
Sbjct  165  RTLVLSPPHLVYKWRREILKTVPNARVWILNGADTLAKLLQIRA-LDRKPEVPEFFVMGR  223

Query  184  VRMRMGFHWRSVFTRGRTRHGDVAA----------CPDCGHVITDLDGEPVNP---IELD  230
            VRMRMG+HWR+ ++  R R    +A          CP CG  I D +  P N    +   
Sbjct  224  VRMRMGYHWRPSYAVRRRRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNA  283

Query  231  AEEYRRKCS------HCAAPLWTLIRPRSLSGSDQSSA---VLKALKRIPTIGEVTAQKL  281
                RR C        C  PLWTL R     ++  S+    VLK++  +P IG  TA K+
Sbjct  284  LAKNRRFCKGNHHGKPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKI  343

Query  282  MKRFGDGFLASMLGDNVHEFINLMDGNGELVFSDRQATRMERAMANMEFGFGEGGYQPSE  341
            +  +G+ +LA +L +N++ F NLMD NGE++F DRQA+R++R +++ EF++G GGYQP+E
Sbjct  344  IGMYGEQYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTE  403

Query  342  FIKRYLPQGTFDLLIADEAHEYKNGGSAQGQAMGVlaakarktllltgtlmggygDDLFY  401
            F+KRYLP+  F+LL+ DE+HEYKN G+AQGQAMGVLA    K L LTGTLMGGY++DLF+
Sbjct  404  FVKRYLPKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFF  463

Query  402  LLFRALPGRMIEDGYRPTTSGsmasaamaFMRDHGVLKDIY----SESTGTAHKTAKGSK  457
            LL R  P  MIEDG+    + +++SA+MAFMR HGVLKDI     +E +  A  ++K+ +
Sbjct  464  LLWRLWPQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAER  523

Query  458  VSVRTVKAPGFGPKGVLRCILPFTVFLKLKDIGGNVLPPYDEEFREVAMDTAQVAAYRDL  517
             SVRT KAPGF+P G++R +LP+TVFLKL+D+G  VLP Y E FR V M   Q A Y+++
Sbjct  524  NSVRTAKAPGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKNM  583

Query  518  AGRLTAELKQALARRDTTllgvvlnvllAWPDCCFRSETVLHPRTRDTLAFVPAQFHEFE  577
             + L  +LK AL  RD TL GVV++ LL+WPDCC++++ V   R    L    +QF+E E
Sbjct  584  ESVLRQHLKVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEEE  643

Query  578  ISPKERELIDICKQEKAQGRKVLTYTVYTGKRDTTSRLKVLLEQEDFKVAVLRASVDASR  637
            ISPKE +++++ K+  A+GRK L YTVYT+ RDTT+RLK ++ ++++K AV++A+V A +
Sbjct  644  ISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKADQ  703

Query  638  REDWIAEQLDRGIDVLITNPELVKTGLDLLDFPTIVFMQSGYNVYSLQQAARRSWRIGQK  697
            REDW+ +QL  G++V+I NPELVKTGLDLL FPTI F+Q+GYNVY+L QAARRSWRIGQK
Sbjct  704  REDWVEDQLASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQK  763

Query  698  EPVRVIYLGYAGSSQMTCLELMAKKIMVSQSTSGDVPESGLDVLNQDGDSVEVALARQLV  757
            E V V + GY++++Q  CLELM++K+ V+QSTSGD+P+SGLD+LNQ  +SVEV LA+++V
Sbjct  764  EDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAKRFV  823

53) XC_2046 in NC_007086


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  587 bits (2216),  Expect = 9e-169, Method: Compositional matrix adjust.
 Identities = 388/781 (50%), Positives = 549/781 (71%), Gaps = 27/781 (3%)

Query  13   DLESTAAQATPVQSELLDAESSPLTLSLQDFVGEFGDELLDSLNRANPPVYTGQPQTRRQ  72
            +    +++A+ +  E  ++E +   ++L +F++EFGD L++++   N PVY GQ     +
Sbjct  45   ETAQKSTEAAVLPEESPETELPDSDIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLE  104

Query  73   LIVASLKRKLFeaqaevvhaaaeLLIDRGERAAIVNGEMGCGKTTVGIATAAVLNAEGYR  132
             ++ +L R LF AQ EVV+A  + L+  +  AAI+N+EMG GKT +++A+AA  +  G +
Sbjct  105  EVLDNLERPLFAAQREVVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLH  164

Query  133  RTLVLSPPHLVYKWRREIQETVAGARVWVLNGPDTLVKLIKLREQLGVQPTGQEFFVLGR  192
            RTLVLSPPHLVYKWRREI  TV+ ARVW+LNG+DTL KL+++R  L+ +P   EFFV+GR
Sbjct  165  RTLVLSPPHLVYKWRREILKTVPNARVWILNGADTLAKLLQIRA-LDRKPEVPEFFVMGR  223

Query  193  VRMRMGFHWRPVFTRRRTRHGDVAA----------CPDCGHVITDLDGEPVNP---IELD  239
            VRMRMG+HWRP ++ RR R    +A          CP CG  I D +  P N    +   
Sbjct  224  VRMRMGYHWRPSYAVRRRRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNA  283

Query  240  AEEYRRKCS------HCAAPLWTLIRPRSLSGSDQSSA---VLKALKRIPTIGEVTAQKL  290
                RR C        C  PLWTL R     ++  S+    VLK++  +P IG  TA K+
Sbjct  284  LAKNRRFCKGNHHGKPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKI  343

Query  291  MKRFGDGFLASMLGDNVHEFINLMDGNGELVFSDRQATRMERAMANMEFGFGEGGYQPSE  350
            +  +G+ +LA +L +N++ F NLMD NGE++F DRQA+R++R +++ EF++G GGYQP+E
Sbjct  344  IGMYGEQYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTE  403

Query  351  FIKRYLPQGTFDLLIADEAHEYKNGGSAQGQAMGVlaakarktllltgtlmggygDDLFY  410
            F+KRYLP+  F+LL+ DE+HEYKN G+AQGQAMGVLA    K L LTGTLMGGY++DLF+
Sbjct  404  FVKRYLPKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFF  463

Query  411  LLFRALPGRMIEDGYRPstsgsmasaamafmRDHGVLKDIY----SESTGTAHKTAKGSK  466
            LL R  P  MIEDG+  + + +++SA+MAFMR HGVLKDI     +E +  A  ++K+ +
Sbjct  464  LLWRLWPQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAER  523

Query  467  VSVRTVKAPGFGPKGVLRCILPFTVFLKLKDIGGNVLPPYDEEFREVAMDTAQVAAYRDL  526
             SVRT KAPGF+P G++R +LP+TVFLKL+D+G  VLP Y E FR V M   Q A Y+++
Sbjct  524  NSVRTAKAPGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKNM  583

Query  527  AGRLTAELKQALARRDTTllgvvlnvllAWPDCCFRSETVLHPRTRDTLAFVPAQFHEFE  586
             + L  +LK AL  RD TL GVV++ LL+WPDCC++++ V   R    L    +QF+E E
Sbjct  584  ESVLRQHLKVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEEE  643

Query  587  ISPKERELIDICKQEKAQGRNVLTYTVYTGKRDTTSRLKVLLEQEGFKVAVLRASVDASR  646
            ISPKE +++++ K+  A+GR+ L YTVYT+ RDTT+RLK ++ ++G+K AV++A+V A +
Sbjct  644  ISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKADQ  703

Query  647  REDWIAEQLDRGIDVLITNPELVKTGLDLLDFPTIVFMQSGYNVYSLQQAARRSWRIGQK  706
            REDW+ +QL  G++V+I NPELVKTGLDLL FPTI F+Q+GYNVY+L QAARRSWRIGQK
Sbjct  704  REDWVEDQLASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQK  763

Query  707  EPVRVIYLGYAGSSQMTCLELMAKKIMVSQSTSGDVPESGLDVLNQDGDSVEVALARQLV  766
            E V V + GY++++Q  CLELM++K+ V+QSTSGD+P+SGLD+LNQ  +SVEV LA+++V
Sbjct  764  EDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAKRFV  823

Query  767  A  767
             
Sbjct  824  D  824

54) Plav_3405 in NC_009719


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  581 bits (2193),  Expect = 6e-167, Method: Compositional matrix adjust.
 Identities = 385/780 (50%), Positives = 546/780 (70%), Gaps = 27/780 (3%)

Query  4    DLESTAAEATPVQGELLDAAPSPLTLSLQDFVGEFGDELLDSLNRANPPVYTGQPQAHRQ  63
            +    ++EA+ +  E  ++  +   ++L +F++EFGD L++++   N PVY GQ  +  +
Sbjct  45   ETAQKSTEAAVLPEESPETELPDSDIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLE  104

Query  64   LIVASLKRKLFeaqaevvyaaaellvDRGERAAIVNGEMGCGKTTVGIATAAVLNAEGYR  123
             ++ +L R LF AQ EVV A  + LV  +  AAI+N+EMG GKT +++A+AA  +  G +
Sbjct  105  EVLDNLERPLFAAQREVVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLH  164

Query  124  RTLVLSPPHLVYKWRREIQETVTGAKVWVLNGPDTLVKLIRLREQLGVQPTGQEFYVLGR  183
            RTLVLSPPHLVYKWRREI  TV  A+VW+LNG+DTL KL+++R  L+ +P   EF+V+GR
Sbjct  165  RTLVLSPPHLVYKWRREILKTVPNARVWILNGADTLAKLLQIRA-LDRKPEVPEFFVMGR  223

Query  184  VRMRMGFHWKPVFTRRRTRHGDVAA----------CPDCGTVITDLDGEPVNP---IALE  230
            VRMRMG+HW+P ++ RR R    +A          CP CG  I D +  P N    +   
Sbjct  224  VRMRMGYHWRPSYAVRRRRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNA  283

Query  231  AEEYRRKCS------HCAAPLWTLIRPRSLSGSDQSSA---VLKALKRIPTIGEVTAQRL  281
                RR C        C  PLWTL R     ++  S+    VLK++  +P IG  TA ++
Sbjct  284  LAKNRRFCKGNHHGKPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKI  343

Query  282  MQKFGDGFLASMLGDNIHEFINLMDGSGELVFSDRQATRMERAMANMEFGFGEGGYQPSE  341
            +  +G+ +LA +L +NI+ F NLMD +GE++F DRQA+R++R +++ EF++G GGYQP+E
Sbjct  344  IGMYGEQYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTE  403

Query  342  FIKRYLPQGTFDLLIADEAHEYKNGGSAQGQAMGVlaakarktllltgtlmggygDDLFY  401
            F+KRYLP+  F+LL+ DE+HEYKN G+AQGQAMGVLA    K L LTGTLMGGY++DLF+
Sbjct  404  FVKRYLPKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFF  463

Query  402  LLFRALPGRMIEDGYRPttsgsmtsasmaFMRDHGVLKDIY----SEStgtahktakgtk  457
            LL R  P  MIEDG+    + ++ SASMAFMR HGVLKDI     +E +  A  ++K+ +
Sbjct  464  LLWRLWPQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAER  523

Query  458  VSVRTVKAPGFGPKGVLRCILPFTIFLKLKDIGGNVLPPYDEEFREVAMDTAQAAAYRDL  517
             SVRT KAPGF+P G++R +LP+T+FLKL+D+G  VLP Y E FR V M   Q A Y+++
Sbjct  524  NSVRTAKAPGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKNM  583

Query  518  AGRLTAELKQALARRDTTllgvvlnvllAWPDCCFRSETVVHPRTRNTLAFVPAQFSEFE  577
             + L  +LK AL  RD TL GVV++ LL+WPDCC++++ V   R  + L    +QF E E
Sbjct  584  ESVLRQHLKVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEEE  643

Query  578  LTPKERELIDVCKEEKAQGRKVLAYTVYTGTRDTTSRLKVLLEQEGFKVAVLRASVDASR  637
            ++PKE ++++V K+  A+GRK L YTVYT+TRDTT+RLK ++ ++G+K AV++A+V A +
Sbjct  644  ISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKADQ  703

Query  638  REDWIAEQLDRGIDVLITNPELVKTGLDLLEFPTIVFMQSGYNVYSLQQAARRSWRIGQK  697
            REDW+ +QL  G++V+I NPELVKTGLDLL FPTI F+Q+GYNVY+L QAARRSWRIGQK
Sbjct  704  REDWVEDQLASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQK  763

Query  698  QPVRVIYLGYAGSSQMTCLELMAKKIMVSQSTSGDVPESGLDVLNQDGDSVEVALARQLV  757
            + V V + GY++++Q  CLELM++K+ V+QSTSGD+P+SGLD+LNQ  +SVEV LA+++V
Sbjct  764  EDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAKRFV  823

55) Aave_2701 in NC_008752


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  573 bits (2163),  Expect = 1e-164, Method: Compositional matrix adjust.
 Identities = 358/736 (49%), Positives = 517/736 (71%), Gaps = 35/736 (4%)

Query  27   APSDPTPADVATESQSGTVADVFDETIALGDFIRSFGQGLLQQVRSQHPPVYVPDRDQAT  86
            A +   +++ A  ++ +  +++ D  I+L +F+  FG++L++ V  Q+ PVY        
Sbjct  44   AETAQKSTEAAVLPEESPETELPDSDIPLTQFLAEFGDSLFNAVTEQNQPVY------QG  97

Query  87   EAWQARKRILGTLKRQPFEPQAEAVQAIVKLLVDQDEPAAVLNAEMGTGKTMMAICAAAL  146
            ++      +L+ L R  F +Q E V+A+++ LV +D PAA++NAEMGTGKTMM++ AAA 
Sbjct  98   QTYPLLEEVLDNLERPLFAAQREVVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAA  157

Query  147  MQESH-PRTLVISPPHLVYKWRREIMETVPNARVWVLNGPDTlrklltlrarlglESSQP  205
             +++   RTLV+SPPHLVYKWRREI+ TVPNARVW+LNG+DTL KLL +RA     +  P
Sbjct  158  AHQAGLHRTLVLSPPHLVYKWRREILKTVPNARVWILNGADTLAKLLQIRALDR-KPEVP  216

Query  206  EFFVLGRVRMRMGFHWRPS--LIERRIVVDGDRMSVA----CCPDCMRPIESKAGDGERM  259
            EFFV+GRVRMRMG+HWRPS  +  RRI  +G   + A     CP C         D E  
Sbjct  217  EFFVMGRVRMRMGYHWRPSYAVRRRRIPSEGASEGFAVSEYYCPKC----GCEILDEENK  272

Query  260  PMSMELA-KAVFGDRRMHCE------HCGSTLWTLIRAGRP----IESMHDLVHGALQQL  308
            P + E + K  ++  R  C        C   LWTL R  ++    + ++ D V  ++  L
Sbjct  273  PYNTEGGVKNALAKNRRFCKGNHHGKPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTL  332

Query  309  PTIGPASATRLLKAFGDKTLAAMLEDNVYEFVNLMDENGDLVFSDRQAKRMERSLANFEF  368
            P IGP +A++++  +G++ LA +LE+N+  F NLMDENG+++F DRQA R++R L++ EF
Sbjct  333  PGIGPKTAAKIIGMYGEQYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEF  392

Query  369  SIGQGGYQPTEFIKRYLPRDYFGLLVVDEGHEYKNEGSAQGQAMGVLASQCRKVLLLTGT  428
            S+G+GGYQPTEF+KRYLP+++FGLLVVDEGHEYKN G+AQGQAMGVLA  C K+L LTGT
Sbjct  393  SLGRGGYQPTEFVKRYLPKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGT  452

Query  429  LMGGYADDLFHLLWRVNPRALLADGFRPSKSGSMASATMGFMRAHGVLKDVYK----ESA  484
            LMGGYA+DLF LLWR+ P+ ++ DGF  +K+ +++SA+M+FMR HGVLKD+ +    E +
Sbjct  453  LMGGYAEDLFFLLWRLWPQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYS  512

Query  485  ASSHRTAKARSLTVRTSKAPGFGPVGLMRYVLPMTVFLKLRDIGQKVLPDYTENFIDVDM  544
             ++  ++KA   +VRT+KAPGF+P+G+MRYVLP+TVFLKLRD+G+ VLP+Y E F  V+M
Sbjct  513  NGAFSSSKAERNSVRTAKAPGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEM  572

Query  545  SPEQAEAYAVMSAKLVAILRQALAVGDSTLLGVVMNVLLAWPECSFRTETV-RHPRTKSL  603
            + +Q   Y  M + L   L+ AL   D+TL GVVM+ LL+WP+C ++ + V ++ + K L
Sbjct  573  TEDQQAVYKNMESVLRQHLKVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKIL  632

Query  604  LHLQPAVFEETACMPKEAKLIELCVQAKARGRKVLVYSIYSGKrdttarlrlllearGFK  663
            +H +P  F+E    PKEA ++E+  ++ A+GRK LVY++Y++ RDTT+RL+ ++  +G+K
Sbjct  633  FHTEPQ-FDEEEISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIK  691

Query  664  VGVLRASVDASKREDWVADQVERGIDVLITNPELVKTGLDLLDFPTIVFLQSGFNVYTVQ  723
             +V++A+V A +REDWV DQ+  G++V+I NPELVKTGLDLL FPTI FLQ+G+NVYT+ 
Sbjct  692  AAVMKATVKADQREDWVEDQLASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLM  751

Query  724  QAARRSWRIGVRGAME  739
            QAARRSWRIG +  +E
Sbjct  752  QAARRSWRIGQKEDVE  767

56) Bpet4284 in NC_010170


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  562 bits (2120),  Expect = 2e-161, Method: Compositional matrix adjust.
 Identities = 346/667 (52%), Positives = 478/667 (72%), Gaps = 27/667 (4%)

Query  3    NAEGYRRTLVLSPPHLVYKWRREIQETVAGAKVWVLNGPDTLVKLIKLREQLGVQPTGQE  62
            +  G +RTLVLSPPHLVYKWRREI  TV+ A+VW+LNG+DTL KL+++R  L+ +P   E
Sbjct  159  HQAGLHRTLVLSPPHLVYKWRREILKTVPNARVWILNGADTLAKLLQIRA-LDRKPEVPE  217

Query  63   FFILGRVRMRMGFHWKPVFTQRRTRHGDVAA----------CPDCGTLITDLDGEPVNP-  111
            FF++GRVRMRMG+HW+P ++ RR R    +A          CP CG  I D +  P N  
Sbjct  218  FFVMGRVRMRMGYHWRPSYAVRRRRIPSEGASEGFAVSEYYCPKCGCEILDEENKPYNTE  277

Query  112  --VALEAEESRRKCS------HCAAPLWTLIRPRSLSGSDQSSV---VLKALKRIPTIGE  160
              V      +RR C        C  PLWTL R     ++  S+V   VLK++  +P IG 
Sbjct  278  GGVKNALAKNRRFCKGNHHGKPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGP  337

Query  161  VTAQKLMQKFGDGFLASMLGDNIHEFINLMDGNGELVFSDRQATRMERAMANMEFGFGEG  220
             TA K++  +G+ +LA +L +NI+ F NLMD NGE++F DRQA+R++R +++ EF++G G
Sbjct  338  KTAAKIIGMYGEQYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRG  397

Query  221  GYQPSEFIKRYLPQGTFDLLIADEAHEYKNGGSAQGQAMGVlaakarktllltgtlmggy  280
            GYQP+EF+KRYLP+  F+LL+ DE+HEYKN G+AQGQAMGVLA    K L LTGTLMGGY
Sbjct  398  GYQPTEFVKRYLPKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGY  457

Query  281  gDDLFYLLFRALPGRMIEDGYRPTTSGSMTSAAMAFMRDHGVLKDIY----SESAGTAHK  336
            ++DLF+LL R  P  MIEDG+    + ++ SA+MAFMR HGVLKDI     +E +  A  
Sbjct  458  AEDLFFLLWRLWPQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFS  517

Query  337  TAKGTKVSVRTVKAPGFGPKGVLRCILPFTIFLKLKDIGGNVLPPYDEEFREVQMDVAQA  396
            ++K+ + SVRT KAPGF+P G++R +LP+T+FLKL+D+G  VLP Y E FR V+M   Q 
Sbjct  518  SSKAERNSVRTAKAPGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQ  577

Query  397  AAYRDLAGRLTAELKQALARRDTTllgvvlnvllAWPDCCFRSETVVHPRTRNTLAFVPA  456
            A Y+++ + L  +LK AL  RD TL GVV++ LL+WPDCC++++ V   R  + L    +
Sbjct  578  AVYKNMESVLRQHLKVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKILFHTEP  637

Query  457  QFNEFEISPKERELIDICKAEKEQGRKVLAYTVYTGTRDTTSRLKGLLEQEGFKVAVLRA  516
            QF+E EISPKE +++++ K    +GRK L YTVYT+TRDTT+RLK ++ ++G+K AV++A
Sbjct  638  QFDEEEISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKA  697

Query  517  SVDASRREDWIAEQLDRGIDVLVTNPELVKTGLDLLEFPTIVFMQSGYNVYSLQQAARRS  576
            +V A +REDW+ +QL  G++V++ NPELVKTGLDLL FPTI F+Q+GYNVY+L QAARRS
Sbjct  698  TVKADQREDWVEDQLASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRS  757

Query  577  WRIGQKQPVRVIYLGYAGSSQMTCLELMAKKIMVSQSTSGDVPESGLDVLNQDGDSVEVA  636
            WRIGQK+ V V + GY++++Q  CLELM++K+ V+QSTSGD+P+SGLD+LNQ  +SVEV 
Sbjct  758  WRIGQKEDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQ  817

Query  637  LARQLVA  643
            LA+++V 
Sbjct  818  LAKRFVD  824

57) HDN1F_17910 in NC_014366


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  548 bits (2070),  Expect = 3e-157, Method: Compositional matrix adjust.
 Identities = 350/701 (50%), Positives = 496/701 (71%), Gaps = 34/701 (4%)

Query  49   PATD-ATPTMSLHQFINDFGSDLLHAVERELPPVYAGARPEHRDQVLDALKRKPFDAQRE  107
            P T+ + + ++L QF+ +FG  L++AV  +  PVY G      ++VLD L R  F AQRE
Sbjct  61   PETELPDSDIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLEEVLDNLERPLFAAQRE  120

Query  108  AVHAATALLVDKGEQACVLNCDMGTGKTMMAICAAAILHAEGYRRMLILAPPHLVYKWRR  167
             V+A    LV  +  A ++N +MGTGKTMM++ AAA  H  G +R L+L+PPHLVYKWRR
Sbjct  121  VVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLHRTLVLSPPHLVYKWRR  180

Query  168  EILDTVPNAEVWVLNGPDTLAKLLKFRELLGVNPKGPQFFIMGRVRMRMGFHWRPAFGVR  227
            EIL TVPNA VW+LNG+DTLAKLL++R L + +P  P+FF+MGRVRMRMG+HWRP+++VR
Sbjct  181  EILKTVPNARVWILNGADTLAKLLQIRAL-DRKPEVPEFFVMGRVRMRMGYHWRPSYAVR  239

Query  228  NHYSLEAADGCDSDSPKVRRRTTFACCPDCGQAITGENDRPLHPDE---LAHADRRTACS  284
             +  + + ++ ++ +      + +  CP CG  I +E+++P + +     A A  R  C 
Sbjct  240  RR-RIPSEGASEGFAV-----SEY-YCPKCGCEILDEENKPYNTEGGVKNALAKNRRFCK  292

Query  285  ------HCGGRLWTLMRPCAQRPRQELVMDTV--------QQLPTIGPKTAHRLMNLFGE  330
                   C   LWTL   C +   ++ V+ TV          LP IGPKTA +++ ++GE
Sbjct  293  GNHHGKPCKEPLWTL---CRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKIIGMYGE  349

Query  331  DTLADMLSDNLYAFINLMDDEGNLVFSDRQAKRMERALANMELSFGDGHYQATEFVKRYF  390
            + LA++L +N+ AF NLMD++G+++F DRQA R++R L++ E+S+G G YQ+TEFVKRY+
Sbjct  350  QYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTEFVKRYL  409

Query  391  PRNTFDVLIVDEGHEYKSGSSAQGMAMAVLATQVRKTLLLTGTLMAGYADDLFFLLWRIM  450
            P+N F++L+VDEGHEYK+ ++AQG AM+VLA    K L LTGTLM+GYA+DLFFLLWR+ 
Sbjct  410  PKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFFLLWRLW  469

Query  451  TRRMREDGYQYNSRGSLGSASMAWMREHGVLKEIYK----EKESSDLRTAKGKRTTVRTS  506
             + M EDG+ YN   +LGSASMA MR HGVLK+I +    E  ++ + ++K+ R +VRT+
Sbjct  470  PQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAERNSVRTA  529

Query  507  KAPGFGPKGIARYVLPYTVFLKLKDIGQKVLPTYDEIFHEVDMTPAMTHVYSKMQETLSD  566
            KAPGF+P GI RYVLP TVFLKL+D+G+ VLP Y E+F+ V+MT     VY +M+  L +
Sbjct  530  KAPGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKNMESVLRQ  589

Query  567  HLKKALRAGDNTLLGVVLNALLAWPECCFRPENITHPRDRQKTLHFNAALFGEYEPTPKE  626
            HLK ALR  DNTL GVV++ALL+WP+CC++P+++   R+ +K L    + F+E E +PKE
Sbjct  590  HLKVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQ-NKILFHTEPQFDEEEISPKE  648

Query  627  QALIDLCRDEHAQGRRVLIYtvytgtrdtttrlktllarEGFNAAVLKATVATDKREDWI  686
              ++++ +D  A+GR+ L+YTVYT+TRDTT RLK ++ R+G++AAV+KATV +D+REDW+
Sbjct  649  ADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKADQREDWV  708

Query  687  VDQVERGCDALITNPELVKTGLDLLDFPTIVFLQTGYNVYV  727
             DQ+  G + +I NPELVKTGLDLL FPTI FLQTGYNVY 
Sbjct  709  EDQLASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYT  749

58) HDN1F_35270 in NC_014366


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  548 bits (2070),  Expect = 3e-157, Method: Compositional matrix adjust.
 Identities = 350/701 (50%), Positives = 496/701 (71%), Gaps = 34/701 (4%)

Query  49   PATD-ATPTMSLHQFINDFGSDLLHAVERELPPVYAGARPEHRDQVLDALKRKPFDAQRE  107
            P T+ + + ++L QF+ +FG  L++AV  +  PVY G      ++VLD L R  F AQRE
Sbjct  61   PETELPDSDIPLTQFLAEFGDSLFNAVTEQNQPVYQGQTYPLLEEVLDNLERPLFAAQRE  120

Query  108  AVHAATALLVDKGEQACVLNCDMGTGKTMMAICAAAILHAEGYRRMLILAPPHLVYKWRR  167
             V+A    LV  +  A ++N +MGTGKTMM++ AAA  H  G +R L+L+PPHLVYKWRR
Sbjct  121  VVRAVLQQLVAEDKPAAIINAEMGTGKTMMSVAAAAAAHQAGLHRTLVLSPPHLVYKWRR  180

Query  168  EILDTVPNAEVWVLNGPDTLAKLLKFRELLGVNPKGPQFFIMGRVRMRMGFHWRPAFGVR  227
            EIL TVPNA VW+LNG+DTLAKLL++R L + +P  P+FF+MGRVRMRMG+HWRP+++VR
Sbjct  181  EILKTVPNARVWILNGADTLAKLLQIRAL-DRKPEVPEFFVMGRVRMRMGYHWRPSYAVR  239

Query  228  NHYSLEAADGCDSDSPKVRRRTTFACCPDCGQAITGENDRPLHPDE---LAHADRRTACS  284
             +  + + ++ ++ +      + +  CP CG  I +E+++P + +     A A  R  C 
Sbjct  240  RR-RIPSEGASEGFAV-----SEY-YCPKCGCEILDEENKPYNTEGGVKNALAKNRRFCK  292

Query  285  ------HCGGRLWTLMRPCAQRPRQELVMDTV--------QQLPTIGPKTAHRLMNLFGE  330
                   C   LWTL   C +   ++ V+ TV          LP IGPKTA +++ ++GE
Sbjct  293  GNHHGKPCKEPLWTL---CRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKIIGMYGE  349

Query  331  DTLADMLSDNLYAFINLMDDEGNLVFSDRQAKRMERALANMELSFGDGHYQATEFVKRYF  390
            + LA++L +N+ AF NLMD++G+++F DRQA R++R L++ E+S+G G YQ+TEFVKRY+
Sbjct  350  QYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTEFVKRYL  409

Query  391  PRNTFDVLIVDEGHEYKSGSSAQGMAMAVLATQVRKTLLLTGTLMAGYADDLFFLLWRIM  450
            P+N F++L+VDEGHEYK+ ++AQG AM+VLA    K L LTGTLM+GYA+DLFFLLWR+ 
Sbjct  410  PKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFFLLWRLW  469

Query  451  TRRMREDGYQYNSRGSLGSASMAWMREHGVLKEIYK----EKESSDLRTAKGKRTTVRTS  506
             + M EDG+ YN   +LGSASMA MR HGVLK+I +    E  ++ + ++K+ R +VRT+
Sbjct  470  PQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAERNSVRTA  529

Query  507  KAPGFGPKGIARYVLPYTVFLKLKDIGQKVLPTYDEIFHEVDMTPAMTHVYSKMQETLSD  566
            KAPGF+P GI RYVLP TVFLKL+D+G+ VLP Y E+F+ V+MT     VY +M+  L +
Sbjct  530  KAPGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKNMESVLRQ  589

Query  567  HLKKALRAGDNTLLGVVLNALLAWPECCFRPENITHPRDRQKTLHFNAALFGEYEPTPKE  626
            HLK ALR  DNTL GVV++ALL+WP+CC++P+++   R+ +K L    + F+E E +PKE
Sbjct  590  HLKVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQ-NKILFHTEPQFDEEEISPKE  648

Query  627  QALIDLCRDEHAQGRRVLIYtvytgtrdtttrlktllarEGFNAAVLKATVATDKREDWI  686
              ++++ +D  A+GR+ L+YTVYT+TRDTT RLK ++ R+G++AAV+KATV +D+REDW+
Sbjct  649  ADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKADQREDWV  708

Query  687  VDQVERGCDALITNPELVKTGLDLLDFPTIVFLQTGYNVYV  727
             DQ+  G + +I NPELVKTGLDLL FPTI FLQTGYNVY 
Sbjct  709  EDQLASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYT  749

59) Bpet1476 in NC_010170


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  522 bits (1968),  Expect = 3e-149, Method: Compositional matrix adjust.
 Identities = 323/640 (51%), Positives = 456/640 (72%), Gaps = 27/640 (4%)

Query  1    MAGAKVWVLNGPDTLVKLIKLREQMGVQPTGQEFFVLGRVRMRMGFHWKPVFTTRRTRHG  60
            ++ A+VW+LNG+DTL KL+++R  ++ +P   EFFV+GRVRMRMG+HW+P ++ RR R  
Sbjct  186  VPNARVWILNGADTLAKLLQIRA-LDRKPEVPEFFVMGRVRMRMGYHWRPSYAVRRRRIP  244

Query  61   DVAA----------CPDCGTVITDLDGEPVNP---VALQAEEYRRKCS------HCAAPL  101
              +A          CP CG  I D +  P N    V       RR C        C  PL
Sbjct  245  SEGASEGFAVSEYYCPKCGCEILDEENKPYNTEGGVKNALAKNRRFCKGNHHGKPCKEPL  304

Query  102  WTLIRPRSLSGSDQSSA---VLKALKRIPTIGEVTAQKLMQKFGDGFLASMLGDNIHEFI  158
            WTL R     ++  S+    VLK++  +P IG  TA K++  +G+ +LA +L +NI+ F 
Sbjct  305  WTLCRKEQSEDGVVSTVYDRVLKTMTTLPGIGPKTAAKIIGMYGEQYLAEILENNIQAFS  364

Query  159  NLMDGNGELVFSDRQATRMERAMANMEFGFGEGGYQPSEFIKRYLPQGTFDLLIADEAHE  218
            NLMD NGE++F DRQA+R++R +++ EF++G GGYQP+EF+KRYLP+  F+LL+ DE+HE
Sbjct  365  NLMDENGEFLFDDRQAARIDRDLGKAEFSLGRGGYQPTEFVKRYLPKNFFGLLVVDEGHE  424

Query  219  YKNGGSAQGQAMGVlaakarktllltgtlmggygDDLFYLLFRALPGRMIEDGYRPTTSG  278
            YKN G+AQGQAMGVLA    K L LTGTLMGGY++DLF+LL R  P  MIEDG+    + 
Sbjct  425  YKNYGTAQGQAMGVLARCCNKILCLTGTLMGGYAEDLFFLLWRLWPQMMIEDGFSYNKGN  484

Query  279  SMTSAAMAFMRDHGVLKDIY----SESAGTAHKTARGTKVSVRTVKAPGFGPKGVLRCIL  334
            ++ SA+MAFMR HGVLKDI     +E +  A  ++++ + SVRT KAPGF+P G++R +L
Sbjct  485  TLGSASMAFMRKHGVLKDIVRHLGTEYSNGAFSSSKAERNSVRTAKAPGFSPLGIMRYVL  544

Query  335  PFTIFLKLKDIGGNVLPPYDEQFREVQMDVAQAAAYRDLAGRLTAELKQALARRDTTllg  394
            P+T+FLKL+D+G  VLP Y E FR V+M   Q A Y+++ + L  +LK AL  RD TL G
Sbjct  545  PITVFLKLRDLGEGVLPGYKEVFRPVEMTEDQQAVYKNMESVLRQHLKVALRNRDNTLTG  604

Query  395  vvlnvllAWPDCCFRSETVVHPRTRNTLAFVPAQFNEFEVTPKERELIDICKEEKAQGRK  454
            VV++ LL+WPDCC++++ V   R  + L    +QF+E E++PKE +++++ K+  A+GRK
Sbjct  605  VVMSALLSWPDCCYKPQDVYWRRQNKILFHTEPQFDEEEISPKEADMLEVVKDSLAKGRK  664

Query  455  VLAYTVYTGTRDTTSRLKMLLEQEGFKVAVLRASVDASRREDWIAEQLDRGIDVLITNPE  514
             L YTVYT+TRDTT+RLK ++ ++G+K AV++A+V A +REDW+ +QL  G++V+I NPE
Sbjct  665  CLVYTVYTDTRDTTGRLKEIFKRHGIKAAVMKATVKADQREDWVEDQLASGVQVVICNPE  724

Query  515  LVKTGLDLLEFPTIVFMQSGYNVYSLQQAARRSWRIGQKLHVRVIYLGYAGSSQMTCLEL  574
            LVKTGLDLL FPTI F+Q+GYNVY+L QAARRSWRIGQK +V V + GY++++Q  CLEL
Sbjct  725  LVKTGLDLLAFPTIYFLQTGYNVYTLMQAARRSWRIGQKEDVEVYFAGYSDTAQQICLEL  784

Query  575  MAKKIMVSQSTSGDVPESGLDVLNQDGDSVEVALARQLVA  614
            M++K+ V+QSTSGD+P+SGLD+LNQ  +SVEV LA+++V 
Sbjct  785  MGQKVAVTQSTSGDMPDSGLDILNQAEGSVEVQLAKRFVD  824

60) Daci_4161 in NC_010002


> AY803022|43|G43|58891411|AAW83099.1|Neisseria_gonorrhoeae_MS11|-|38695..41178|yea|-|Yea
Length=827

 Score =  503 bits (1897),  Expect = 1e-143, Method: Compositional matrix adjust.
 Identities = 312/613 (51%), Positives = 434/613 (71%), Gaps = 26/613 (4%)

Query  13   QPTGQEFFILGRVRMRMGFHWKPVFTQRRTRHGDVAA----------CPDCGTLITDLDG  62
            +P   EFF++GRVRMRMG+HW+P ++ RR R    +A          CP CG  I D + 
Sbjct  212  KPEVPEFFVMGRVRMRMGYHWRPSYAVRRRRIPSEGASEGFAVSEYYCPKCGCEILDEEN  271

Query  63   EPVNP---VALEAEESRRKCS------HCAAPLWTLIRPRSLSGSDQSSV---VLKALKR  110
             P N    V      +RR C        C  PLWTL R     ++  S+V   VLK++  
Sbjct  272  KPYNTEGGVKNALAKNRRFCKGNHHGKPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTT  331

Query  111  IPTIGEVTAQKLMQKFGDGFLASMLGDNIHEFINLMDGNGELVFSDRQATRMERAMANME  170
            +P IG  TA K++  +G+ +LA +L +NI+ F NLMD NGE++F DRQA+R++R +++ E
Sbjct  332  LPGIGPKTAAKIIGMYGEQYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGKAE  391

Query  171  FGFGEGGYQPSEFIKRYLPQGTFDLLIADEAHEYKNGGSAQGQAMGVlaakarktllltg  230
            F++G GGYQP+EF+KRYLP+  F+LL+ DE+HEYKN G+AQGQAMGVLA    K L LTG
Sbjct  392  FSLGRGGYQPTEFVKRYLPKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKILCLTG  451

Query  231  tlmggygDDLFYLLFRALPGRMIEDGYRPTTSGSMTSAAMAFMRDHGVLKDIY----SES  286
            TLMGGY++DLF+LL R  P  MIEDG+    + ++ SA+MAFMR HGVLKDI     +E 
Sbjct  452  TLMGGYAEDLFFLLWRLWPQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVRHLGTEY  511

Query  287  AGTAHKTAKGTKVSVRTVKAPGFGPKGVLRCILPFTIFLKLKDIGGNVLPPYDEEFREVQ  346
            +  A  ++K+ + SVRT KAPGF+P G++R +LP+T+FLKL+D+G  VLP Y E FR V+
Sbjct  512  SNGAFSSSKAERNSVRTAKAPGFSPLGIMRYVLPITVFLKLRDLGEGVLPGYKEVFRPVE  571

Query  347  MDVAQAAAYRDLAGRLTAELKQALARRDTTllgvvlnvllAWPDCCFRSETVVHPRTRNT  406
            M   Q A Y+++ + L  +LK AL  RD TL GVV++ LL+WPDCC++++ V   R  + 
Sbjct  572  MTEDQQAVYKNMESVLRQHLKVALRNRDNTLTGVVMSALLSWPDCCYKPQDVYWRRQNKI  631

Query  407  LAFVPAQFNEFEISPKERELIDICKAEKEQGRKVLAYTVYTGTRDTTSRLKGLLEQEGFK  466
            L    +QF+E EISPKE +++++ K    +GRK L YTVYT+TRDTT+RLK ++ ++G+K
Sbjct  632  LFHTEPQFDEEEISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTGRLKEIFKRHGIK  691

Query  467  VAVLRASVDASRREDWIAEQLDRGIDVLVTNPELVKTGLDLLEFPTIVFMQSGYNVYSLQ  526
             AV++A+V A +REDW+ +QL  G++V++ NPELVKTGLDLL FPTI F+Q+GYNVY+L 
Sbjct  692  AAVMKATVKADQREDWVEDQLASGVQVVICNPELVKTGLDLLAFPTIYFLQTGYNVYTLM  751

Query  527  QAARRSWRIGQKQPVRVIYLGYAGSSQMTCLELMAKKIMVSQSTSGDVPESGLDVLNQDG  586
            QAARRSWRIGQK+ V V + GY++++Q  CLELM++K+ V+QSTSGD+P+SGLD+LNQ  
Sbjct  752  QAARRSWRIGQKEDVEVYFAGYSDTAQQICLELMGQKVAVTQSTSGDMPDSGLDILNQAE  811

Query  587  DSVEVALARQLVA  599
            +SVEV LA+++V 
Sbjct  812  GSVEVQLAKRFVD  824