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Homologs of escF gene of NC_013361_P1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) escF
( YP_003236072.1 )

T3SS structure protein EscF

NC_013364
(Escherichia coli 11128)

8e-28

100

2) escF
( YP_003232169.1 )

T3SS structure protein EscF

NC_013361
(Escherichia coli 11368)

8e-28

100

3) escF
( YP_003223459.1 )

T3SS structure protein EscF

NC_013353
(Escherichia coli 12009)

8e-28

100

4) escF
( YP_003501858.1 )

type III secretion apparatus needle protein

NC_013941
(Escherichia coli CB9615)

8e-28

100

5) escF
( YP_002331394.1 )

T3SS structure protein EscF

NC_011601
(Escherichia coli E2348/69)

8e-28

100

6) eprI
( YP_002273151.1 )

type III secretion apparatus needle protein

NC_011353
(Escherichia coli EC4115)

8e-28

100

7) escF
( NP_290252.1 )

hypothetical protein

NC_002655
(Escherichia coli EDL933)

8e-28

100

8) ECO55CA74_21150
( YP_006161335.1 )

type III secretion apparatus needle protein

NC_017656
(Escherichia coli RM12579)

8e-28

100

9) ECs4552
( NP_312579.1 )

protein EscF

NC_002695
(Escherichia coli Sakai)

8e-28

100

10) escF
( YP_003080464.1 )

LEE-encoded type III secretion system component

NC_013008
(Escherichia coli TW14359)

8e-28

100

11) CDCO157_4286
( YP_006315152.1 )

protein EscF

NC_017906
(Escherichia coli Xuzhou21)

8e-28

100

12) escF
( YP_003366486.1 )

T3SS structural protein EscF

NC_013716
(Citrobacter rodentium ICC168)

8e-22

13) Sbal175_2406
( YP_006020963.1 )

type III secretion system needle protein

NC_017571
(Shewanella baltica BA175)

5e-10

14) Sbal117_2075
( YP_006037306.1 )

type III secretion system needle protein

NC_017579
(Shewanella baltica OS117)

5e-10

15) Sbal_1959
( YP_001050332.1 )

type III secretion system needle protein

NC_009052
(Shewanella baltica OS155)

5e-10

• Sequence Alignments

1) escF in NC_013353


> NC_013361_P1|42|G41|260858278|YP_003232169.1|Escherichia_coli_O26:H11_str._11368|+|34432..34653|escF|ECO26_5287|T3SS 
structure 
protein EscF
Length=73

 Score =  116 bits (425),  Expect = 8e-28, Method: Compositional matrix adjust.
 Identities = 73/73 (100%), Positives = 73/73 (100%), Gaps = 0/73 (0%)

Query  1   MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT  60
           MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT
Sbjct  1   MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT  60

Query  61  IKDLVSTISNRSF  73
           IKDLVSTISNRSF
Sbjct  61  IKDLVSTISNRSF  73

2) escF in NC_013364


> NC_013361_P1|42|G41|260858278|YP_003232169.1|Escherichia_coli_O26:H11_str._11368|+|34432..34653|escF|ECO26_5287|T3SS 
structure 
protein EscF
Length=73

 Score =  116 bits (425),  Expect = 8e-28, Method: Compositional matrix adjust.
 Identities = 73/73 (100%), Positives = 73/73 (100%), Gaps = 0/73 (0%)

Query  1   MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT  60
           MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT
Sbjct  1   MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT  60

Query  61  IKDLVSTISNRSF  73
           IKDLVSTISNRSF
Sbjct  61  IKDLVSTISNRSF  73

3) escF in NC_011601


> NC_013361_P1|42|G41|260858278|YP_003232169.1|Escherichia_coli_O26:H11_str._11368|+|34432..34653|escF|ECO26_5287|T3SS 
structure 
protein EscF
Length=73

 Score =  116 bits (425),  Expect = 8e-28, Method: Compositional matrix adjust.
 Identities = 73/73 (100%), Positives = 73/73 (100%), Gaps = 0/73 (0%)

Query  1   MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT  60
           MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT
Sbjct  1   MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT  60

Query  61  IKDLVSTISNRSF  73
           IKDLVSTISNRSF
Sbjct  61  IKDLVSTISNRSF  73

4) eprI in NC_011353


> NC_013361_P1|42|G41|260858278|YP_003232169.1|Escherichia_coli_O26:H11_str._11368|+|34432..34653|escF|ECO26_5287|T3SS 
structure 
protein EscF
Length=73

 Score =  116 bits (425),  Expect = 8e-28, Method: Compositional matrix adjust.
 Identities = 73/73 (100%), Positives = 73/73 (100%), Gaps = 0/73 (0%)

Query  1   MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT  60
           MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT
Sbjct  1   MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT  60

Query  61  IKDLVSTISNRSF  73
           IKDLVSTISNRSF
Sbjct  61  IKDLVSTISNRSF  73

5) escF in NC_002655


> NC_013361_P1|42|G41|260858278|YP_003232169.1|Escherichia_coli_O26:H11_str._11368|+|34432..34653|escF|ECO26_5287|T3SS 
structure 
protein EscF
Length=73

 Score =  116 bits (425),  Expect = 8e-28, Method: Compositional matrix adjust.
 Identities = 73/73 (100%), Positives = 73/73 (100%), Gaps = 0/73 (0%)

Query  1   MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT  60
           MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT
Sbjct  1   MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT  60

Query  61  IKDLVSTISNRSF  73
           IKDLVSTISNRSF
Sbjct  61  IKDLVSTISNRSF  73

6) ECs4552 in NC_002695


> NC_013361_P1|42|G41|260858278|YP_003232169.1|Escherichia_coli_O26:H11_str._11368|+|34432..34653|escF|ECO26_5287|T3SS 
structure 
protein EscF
Length=73

 Score =  116 bits (425),  Expect = 8e-28, Method: Compositional matrix adjust.
 Identities = 73/73 (100%), Positives = 73/73 (100%), Gaps = 0/73 (0%)

Query  1   MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT  60
           MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT
Sbjct  1   MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT  60

Query  61  IKDLVSTISNRSF  73
           IKDLVSTISNRSF
Sbjct  61  IKDLVSTISNRSF  73

7) escF in NC_013008


> NC_013361_P1|42|G41|260858278|YP_003232169.1|Escherichia_coli_O26:H11_str._11368|+|34432..34653|escF|ECO26_5287|T3SS 
structure 
protein EscF
Length=73

 Score =  116 bits (425),  Expect = 8e-28, Method: Compositional matrix adjust.
 Identities = 73/73 (100%), Positives = 73/73 (100%), Gaps = 0/73 (0%)

Query  1   MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT  60
           MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT
Sbjct  1   MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT  60

Query  61  IKDLVSTISNRSF  73
           IKDLVSTISNRSF
Sbjct  61  IKDLVSTISNRSF  73

8) escF in NC_013361


> NC_013361_P1|42|G41|260858278|YP_003232169.1|Escherichia_coli_O26:H11_str._11368|+|34432..34653|escF|ECO26_5287|T3SS 
structure 
protein EscF
Length=73

 Score =  116 bits (425),  Expect = 8e-28, Method: Compositional matrix adjust.
 Identities = 73/73 (100%), Positives = 73/73 (100%), Gaps = 0/73 (0%)

Query  1   MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT  60
           MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT
Sbjct  1   MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT  60

Query  61  IKDLVSTISNRSF  73
           IKDLVSTISNRSF
Sbjct  61  IKDLVSTISNRSF  73

9) escF in NC_013941


> NC_013361_P1|42|G41|260858278|YP_003232169.1|Escherichia_coli_O26:H11_str._11368|+|34432..34653|escF|ECO26_5287|T3SS 
structure 
protein EscF
Length=73

 Score =  116 bits (425),  Expect = 8e-28, Method: Compositional matrix adjust.
 Identities = 73/73 (100%), Positives = 73/73 (100%), Gaps = 0/73 (0%)

Query  1   MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT  60
           MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT
Sbjct  1   MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT  60

Query  61  IKDLVSTISNRSF  73
           IKDLVSTISNRSF
Sbjct  61  IKDLVSTISNRSF  73

10) ECO55CA74_21150 in NC_017656


> NC_013361_P1|42|G41|260858278|YP_003232169.1|Escherichia_coli_O26:H11_str._11368|+|34432..34653|escF|ECO26_5287|T3SS 
structure 
protein EscF
Length=73

 Score =  116 bits (425),  Expect = 8e-28, Method: Compositional matrix adjust.
 Identities = 73/73 (100%), Positives = 73/73 (100%), Gaps = 0/73 (0%)

Query  1   MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT  60
           MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT
Sbjct  1   MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT  60

Query  61  IKDLVSTISNRSF  73
           IKDLVSTISNRSF
Sbjct  61  IKDLVSTISNRSF  73

11) CDCO157_4286 in NC_017906


> NC_013361_P1|42|G41|260858278|YP_003232169.1|Escherichia_coli_O26:H11_str._11368|+|34432..34653|escF|ECO26_5287|T3SS 
structure 
protein EscF
Length=73

 Score =  116 bits (425),  Expect = 8e-28, Method: Compositional matrix adjust.
 Identities = 73/73 (100%), Positives = 73/73 (100%), Gaps = 0/73 (0%)

Query  1   MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT  60
           MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT
Sbjct  1   MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT  60

Query  61  IKDLVSTISNRSF  73
           IKDLVSTISNRSF
Sbjct  61  IKDLVSTISNRSF  73

12) escF in NC_013716


> NC_013361_P1|42|G41|260858278|YP_003232169.1|Escherichia_coli_O26:H11_str._11368|+|34432..34653|escF|ECO26_5287|T3SS 
structure 
protein EscF
Length=73

 Score = 97.0 bits (349),  Expect = 8e-22, Method: Compositional matrix adjust.
 Identities = 44/73 (61%), Positives = 69/73 (95%), Gaps = 0/73 (0%)

Query  1   MNLTQITEDMGNIADTLAEPVPKLLSNPDLVNDPQKMLQLSFSINQFSSYINLESGMIKT  60
           MNL++IT++MG+++ TL+++VP LL++ DLVNDP+KML+L F+++Q+S+Y+N+ESGM+KT
Sbjct  1   MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT  60

Query  61  VKDLISTISNRTF  73
           +KDL+STISNR+F
Sbjct  61  IKDLVSTISNRSF  73

13) Sbal175_2406 in NC_017571


> NC_013361_P1|42|G41|260858278|YP_003232169.1|Escherichia_coli_O26:H11_str._11368|+|34432..34653|escF|ECO26_5287|T3SS 
structure 
protein EscF
Length=73

 Score = 57.9 bits (200),  Expect = 5e-10, Method: Compositional matrix adjust.
 Identities = 29/71 (41%), Positives = 52/71 (74%), Gaps = 1/71 (1%)

Query  1   MDLSAIVNQLSQLSTRSAQEVQAKMSAGDL-NDPDKMIKAQFAMQQYSNFVGYESAMIKA  59
           M+LS I +Q+++++   ++ V   +++ DL NDP+KM+  QFA+QQYS +V  ES+M+K+
Sbjct  1   MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT  60

Query  60  IKDMIQGIISK  70
           IKD++  I ++
Sbjct  61  IKDLVSTISNR  71

14) Sbal117_2075 in NC_017579


> NC_013361_P1|42|G41|260858278|YP_003232169.1|Escherichia_coli_O26:H11_str._11368|+|34432..34653|escF|ECO26_5287|T3SS 
structure 
protein EscF
Length=73

 Score = 57.9 bits (200),  Expect = 5e-10, Method: Compositional matrix adjust.
 Identities = 29/71 (41%), Positives = 52/71 (74%), Gaps = 1/71 (1%)

Query  1   MDLSAIVNQLSQLSTRSAQEVQAKMSAGDL-NDPDKMIKAQFAMQQYSNFVGYESAMIKA  59
           M+LS I +Q+++++   ++ V   +++ DL NDP+KM+  QFA+QQYS +V  ES+M+K+
Sbjct  1   MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT  60

Query  60  IKDMIQGIISK  70
           IKD++  I ++
Sbjct  61  IKDLVSTISNR  71

15) Sbal_1959 in NC_009052


> NC_013361_P1|42|G41|260858278|YP_003232169.1|Escherichia_coli_O26:H11_str._11368|+|34432..34653|escF|ECO26_5287|T3SS 
structure 
protein EscF
Length=73

 Score = 57.9 bits (200),  Expect = 5e-10, Method: Compositional matrix adjust.
 Identities = 29/71 (41%), Positives = 52/71 (74%), Gaps = 1/71 (1%)

Query  1   MDLSAIVNQLSQLSTRSAQEVQAKMSAGDL-NDPDKMIKAQFAMQQYSNFVGYESAMIKA  59
           M+LS I +Q+++++   ++ V   +++ DL NDP+KM+  QFA+QQYS +V  ES+M+K+
Sbjct  1   MNLSEITQQMGEVGKTLSDSVPELLNSTDLVNDPEKMLELQFAVQQYSAYVNVESGMLKT  60

Query  60  IKDMIQGIISK  70
           IKD++  I ++
Sbjct  61  IKDLVSTISNR  71