Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of APECO1_3494 gene of NC_008563_P4

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) c5163
( NP_757011.1 )

hypothetical protein

NC_004431
(Escherichia coli CFT073)

3e-148

100

2) ECS88_3303
( YP_002392914.1 )

hypothetical protein

NC_011742
(Escherichia coli S88)

3e-148

100

3) APECO1_3494
( YP_854317.1 )

hypothetical protein

NC_008563
(Escherichia coli APEC O1)

4e-148

100

4) SeHA_C4686
( YP_002048322.1 )

hypothetical protein

NC_011083
(Salmonella enterica SL476)

4e-148

100

5) SN31241_6680
( YP_008358586.1 )

hypothetical protein

NC_021902
(Salmonella enterica USMARC-S3124.1)

2e-102

6) EC55989_4885
( YP_002405742.1 )

hypothetical protein

NC_011748
(Escherichia coli 55989)

1e-63

7) ECNA114_2125
( YP_006139230.1 )

hypothetical protein

NC_017644
(Escherichia coli NA114)

1e-63

• Sequence Alignments

1) c5163 in NC_004431


> NC_008563_P4|42|G41|117625234|YP_854317.1|Escherichia_coli_APEC_O1|-|45439..46389|-|APECO1_3494|hypothetical 
protein
Length=316

 Score =  517 bits (1950),  Expect = 3e-148, Method: Compositional matrix adjust.
 Identities = 316/316 (100%), Positives = 316/316 (100%), Gaps = 0/316 (0%)

Query  2    MASLSINTLRRMSICKSQAWKDTQRILKRSGLVYRGERSESFDPEKHFNRYTVRYLYLLN  61
            MASLSINTLRRMSICKSQAWKDTQRILKRSGLVYRGERSESFDPEKHFNRYTVRYLYLLN
Sbjct  1    MASLSINTLRRMSICKSQAWKDTQRILKRSGLVYRGERSESFDPEKHFNRYTVRYLYLLN  60

Query  62   IIALKIRSVSKFSCWIEVGQCHRMTGKHLSLNAPPFMLIPRSIRRKVDGFRQSKGEATPK  121
            IIALKIRSVSKFSCWIEVGQCHRMTGKHLSLNAPPFMLIPRSIRRKVDGFRQSKGEATPK
Sbjct  61   IIALKIRSVSKFSCWIEVGQCHRMTGKHLSLNAPPFMLIPRSIRRKVDGFRQSKGEATPK  120

Query  122  SAQPFTGSLYEVLSKESDSAKLDAWIAELPLNLQEEGKEISVMGFSPRAVARPVLRSASP  181
            SAQPFTGSLYEVLSKESDSAKLDAWIAELPLNLQEEGKEISVMGFSPRAVARPVLRSASP
Sbjct  121  SAQPFTGSLYEVLSKESDSAKLDAWIAELPLNLQEEGKEISVMGFSPRAVARPVLRSASP  180

Query  182  TFELFYQEYQSLRLKSVFKFEPRFEQLLTRLSFRKQSILRKQQYRVKSQLLERLGNVLFF  241
            TFELFYQEYQSLRLKSVFKFEPRFEQLLTRLSFRKQSILRKQQYRVKSQLLERLGNVLFF
Sbjct  181  TFELFYQEYQSLRLKSVFKFEPRFEQLLTRLSFRKQSILRKQQYRVKSQLLERLGNVLFF  240

Query  242  TSLYNQGCLEEFINALVEKEDIYLKMSPGEEKVKAHQKMVNYIEAFCNKMTEKYLMPAAS  301
            TSLYNQGCLEEFINALVEKEDIYLKMSPGEEKVKAHQKMVNYIEAFCNKMTEKYLMPAAS
Sbjct  241  TSLYNQGCLEEFINALVEKEDIYLKMSPGEEKVKAHQKMVNYIEAFCNKMTEKYLMPAAS  300

Query  302  RHYKKKKIARSESGES  317
            RHYKKKKIARSESGES
Sbjct  301  RHYKKKKIARSESGES  316

2) ECS88_3303 in NC_011742


> NC_008563_P4|42|G41|117625234|YP_854317.1|Escherichia_coli_APEC_O1|-|45439..46389|-|APECO1_3494|hypothetical 
protein
Length=316

 Score =  517 bits (1950),  Expect = 3e-148, Method: Compositional matrix adjust.
 Identities = 316/316 (100%), Positives = 316/316 (100%), Gaps = 0/316 (0%)

Query  2    MASLSINTLRRMSICKSQAWKDTQRILKRSGLVYRGERSESFDPEKHFNRYTVRYLYLLN  61
            MASLSINTLRRMSICKSQAWKDTQRILKRSGLVYRGERSESFDPEKHFNRYTVRYLYLLN
Sbjct  1    MASLSINTLRRMSICKSQAWKDTQRILKRSGLVYRGERSESFDPEKHFNRYTVRYLYLLN  60

Query  62   IIALKIRSVSKFSCWIEVGQCHRMTGKHLSLNAPPFMLIPRSIRRKVDGFRQSKGEATPK  121
            IIALKIRSVSKFSCWIEVGQCHRMTGKHLSLNAPPFMLIPRSIRRKVDGFRQSKGEATPK
Sbjct  61   IIALKIRSVSKFSCWIEVGQCHRMTGKHLSLNAPPFMLIPRSIRRKVDGFRQSKGEATPK  120

Query  122  SAQPFTGSLYEVLSKESDSAKLDAWIAELPLNLQEEGKEISVMGFSPRAVARPVLRSASP  181
            SAQPFTGSLYEVLSKESDSAKLDAWIAELPLNLQEEGKEISVMGFSPRAVARPVLRSASP
Sbjct  121  SAQPFTGSLYEVLSKESDSAKLDAWIAELPLNLQEEGKEISVMGFSPRAVARPVLRSASP  180

Query  182  TFELFYQEYQSLRLKSVFKFEPRFEQLLTRLSFRKQSILRKQQYRVKSQLLERLGNVLFF  241
            TFELFYQEYQSLRLKSVFKFEPRFEQLLTRLSFRKQSILRKQQYRVKSQLLERLGNVLFF
Sbjct  181  TFELFYQEYQSLRLKSVFKFEPRFEQLLTRLSFRKQSILRKQQYRVKSQLLERLGNVLFF  240

Query  242  TSLYNQGCLEEFINALVEKEDIYLKMSPGEEKVKAHQKMVNYIEAFCNKMTEKYLMPAAS  301
            TSLYNQGCLEEFINALVEKEDIYLKMSPGEEKVKAHQKMVNYIEAFCNKMTEKYLMPAAS
Sbjct  241  TSLYNQGCLEEFINALVEKEDIYLKMSPGEEKVKAHQKMVNYIEAFCNKMTEKYLMPAAS  300

Query  302  RHYKKKKIARSESGES  317
            RHYKKKKIARSESGES
Sbjct  301  RHYKKKKIARSESGES  316

3) APECO1_3494 in NC_008563


> NC_008563_P4|42|G41|117625234|YP_854317.1|Escherichia_coli_APEC_O1|-|45439..46389|-|APECO1_3494|hypothetical 
protein
Length=316

 Score =  517 bits (1949),  Expect = 4e-148, Method: Compositional matrix adjust.
 Identities = 316/316 (100%), Positives = 316/316 (100%), Gaps = 0/316 (0%)

Query  1    MASLSINTLRRMSICKSQAWKDTQRILKRSGLVYRGERSESFDPEKHFNRYTVRYLYLLN  60
            MASLSINTLRRMSICKSQAWKDTQRILKRSGLVYRGERSESFDPEKHFNRYTVRYLYLLN
Sbjct  1    MASLSINTLRRMSICKSQAWKDTQRILKRSGLVYRGERSESFDPEKHFNRYTVRYLYLLN  60

Query  61   IIALKIRSVSKFSCWIEVGQCHRMTGKHLSLNAPPFMLIPRSIRRKVDGFRQSKGEATPK  120
            IIALKIRSVSKFSCWIEVGQCHRMTGKHLSLNAPPFMLIPRSIRRKVDGFRQSKGEATPK
Sbjct  61   IIALKIRSVSKFSCWIEVGQCHRMTGKHLSLNAPPFMLIPRSIRRKVDGFRQSKGEATPK  120

Query  121  SAQPFTGSLYEVLSKESDSAKLDAWIAELPLNLQEEGKEISVMGFSPRAVARPVLRSASP  180
            SAQPFTGSLYEVLSKESDSAKLDAWIAELPLNLQEEGKEISVMGFSPRAVARPVLRSASP
Sbjct  121  SAQPFTGSLYEVLSKESDSAKLDAWIAELPLNLQEEGKEISVMGFSPRAVARPVLRSASP  180

Query  181  TFELFYQEYQSLRLKSVFKFEPRFEQLLTRLSFRKQSILRKQQYRVKSQLLERLGNVLFF  240
            TFELFYQEYQSLRLKSVFKFEPRFEQLLTRLSFRKQSILRKQQYRVKSQLLERLGNVLFF
Sbjct  181  TFELFYQEYQSLRLKSVFKFEPRFEQLLTRLSFRKQSILRKQQYRVKSQLLERLGNVLFF  240

Query  241  TSLYNQGCLEEFINALVEKEDIYLKMSPGEEKVKAHQKMVNYIEAFCNKMTEKYLMPAAS  300
            TSLYNQGCLEEFINALVEKEDIYLKMSPGEEKVKAHQKMVNYIEAFCNKMTEKYLMPAAS
Sbjct  241  TSLYNQGCLEEFINALVEKEDIYLKMSPGEEKVKAHQKMVNYIEAFCNKMTEKYLMPAAS  300

Query  301  RHYKKKKIARSESGES  316
            RHYKKKKIARSESGES
Sbjct  301  RHYKKKKIARSESGES  316

4) SeHA_C4686 in NC_011083


> NC_008563_P4|42|G41|117625234|YP_854317.1|Escherichia_coli_APEC_O1|-|45439..46389|-|APECO1_3494|hypothetical 
protein
Length=316

 Score =  517 bits (1949),  Expect = 4e-148, Method: Compositional matrix adjust.
 Identities = 316/316 (100%), Positives = 316/316 (100%), Gaps = 0/316 (0%)

Query  1    MASLSINTLRRMSICKSQAWKDTQRILKRSGLVYRGERSESFDPEKHFNRYTVRYLYLLN  60
            MASLSINTLRRMSICKSQAWKDTQRILKRSGLVYRGERSESFDPEKHFNRYTVRYLYLLN
Sbjct  1    MASLSINTLRRMSICKSQAWKDTQRILKRSGLVYRGERSESFDPEKHFNRYTVRYLYLLN  60

Query  61   IIALKIRSVSKFSCWIEVGQCHRMTGKHLSLNAPPFMLIPRSIRRKVDGFRQSKGEATPK  120
            IIALKIRSVSKFSCWIEVGQCHRMTGKHLSLNAPPFMLIPRSIRRKVDGFRQSKGEATPK
Sbjct  61   IIALKIRSVSKFSCWIEVGQCHRMTGKHLSLNAPPFMLIPRSIRRKVDGFRQSKGEATPK  120

Query  121  SAQPFTGSLYEVLSKESDSAKLDAWIAELPLNLQEEGKEISVMGFSPRAVARPVLRSASP  180
            SAQPFTGSLYEVLSKESDSAKLDAWIAELPLNLQEEGKEISVMGFSPRAVARPVLRSASP
Sbjct  121  SAQPFTGSLYEVLSKESDSAKLDAWIAELPLNLQEEGKEISVMGFSPRAVARPVLRSASP  180

Query  181  TFELFYQEYQSLRLKSVFKFEPRFEQLLTRLSFRKQSILRKQQYRVKSQLLERLGNVLFF  240
            TFELFYQEYQSLRLKSVFKFEPRFEQLLTRLSFRKQSILRKQQYRVKSQLLERLGNVLFF
Sbjct  181  TFELFYQEYQSLRLKSVFKFEPRFEQLLTRLSFRKQSILRKQQYRVKSQLLERLGNVLFF  240

Query  241  TSLYNQGCLEEFINALVEKEDIYLKMSPGEEKVKAHQKMVNYIEAFCNKMTEKYLMPAAS  300
            TSLYNQGCLEEFINALVEKEDIYLKMSPGEEKVKAHQKMVNYIEAFCNKMTEKYLMPAAS
Sbjct  241  TSLYNQGCLEEFINALVEKEDIYLKMSPGEEKVKAHQKMVNYIEAFCNKMTEKYLMPAAS  300

Query  301  RHYKKKKIARSESGES  316
            RHYKKKKIARSESGES
Sbjct  301  RHYKKKKIARSESGES  316

5) SN31241_6680 in NC_021902


> NC_008563_P4|42|G41|117625234|YP_854317.1|Escherichia_coli_APEC_O1|-|45439..46389|-|APECO1_3494|hypothetical 
protein
Length=316

 Score =  365 bits (1372),  Expect = 2e-102, Method: Compositional matrix adjust.
 Identities = 231/307 (76%), Positives = 261/307 (86%), Gaps = 4/307 (1%)

Query  17   RVTTILQSKAWKDTQRILQRSGLVCR-ERSEPFDPEKHFDCYTVRYLYLLNIIALELKPD  75
            R  +I +S+AWKDTQRIL+RSGLV R ERSE+FDPEKHF+ YTVRYLYLLNIIAL +++ 
Sbjct  10   RRMSICKSQAWKDTQRILKRSGLVYRGERSESFDPEKHFNRYTVRYLYLLNIIALKIRSV  69

Query  76   TRIK--VEVGQWYRITGKHLSLNVPPFMLIPRHIRRKVDGFRQS-GKTTKKPAQQFTGSL  132
            +++   +EVGQ  R+TGKHLSLN PPFMLIPR IRRKVDGFRQS G +T K+AQ FTGSL
Sbjct  70   SKFSCWIEVGQCHRMTGKHLSLNAPPFMLIPRSIRRKVDGFRQSKGEATPKSAQPFTGSL  129

Query  133  YKALSGDIDSAKLDAWIAGLPLSALEGAKEISSMGFNPWVVAKSVRRSASPTFELFYQEY  192
            Y  LS + DSAKLDAWIA LPL+  E +KEIS MGF+P+ VA++V RSASPTFELFYQEY
Sbjct  130  YEVLSKESDSAKLDAWIAELPLNLQEEGKEISVMGFSPRAVARPVLRSASPTFELFYQEY  189

Query  193  QSLVLKSVFKTEPGFEQLLTRLSFIKQSILRKQQYRVKSELLEILGNVLFFTLLYNQGCP  252
            QSL LKSVFK EP FEQLLTRLSF KQSILRKQQYRVKS+LLE LGNVLFFT LYNQGC 
Sbjct  190  QSLRLKSVFKFEPRFEQLLTRLSFRKQSILRKQQYRVKSQLLERLGNVLFFTSLYNQGCL  249

Query  253  GEFVNALVEKEATYLKASPGEEKVKAYQKMINYIEEFCNKMTEKYLISAAKRHYQKKKIT  312
             EF+NALVEKE  YLK SPGEEKVKA QKM+NYIE FCNKMTEKYL++AA RHY+KKKI+
Sbjct  250  EEFINALVEKEDIYLKMSPGEEKVKAHQKMVNYIEAFCNKMTEKYLMPAASRHYKKKKIA  309

Query  313  RIGSGES  319
            R  SGES
Sbjct  310  RSESGES  316

6) EC55989_4885 in NC_011748


> NC_008563_P4|42|G41|117625234|YP_854317.1|Escherichia_coli_APEC_O1|-|45439..46389|-|APECO1_3494|hypothetical 
protein
Length=316

 Score =  236 bits (881),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 164/297 (56%), Positives = 217/297 (74%), Gaps = 18/297 (6%)

Query  24   CK--AWKDTQRILKRSGLVCR-ERSEPFDPEKHFDCYTVRYLYLLNIMALELKSDTRIK-  79
            CK  AWKDTQRILKRSGLV R ERSE+FDPEKHF+ YTVRYLYLLNI+AL ++S +++  
Sbjct  15   CKSQAWKDTQRILKRSGLVYRGERSESFDPEKHFNRYTVRYLYLLNIIALKIRSVSKFSC  74

Query  80   -VEVGQWYRMTGKRLSLNVPPFMLIPRNIRRKVDGFRQSRQSEDEATKNPPQPFTGSLYK  138
             +EVGQ  RMTGK+LSLN PPFMLIPR+IRRKVDGFRQS+   +EAT +++QPFTGSLY 
Sbjct  75   WIEVGQCHRMTGKHLSLNAPPFMLIPRSIRRKVDGFRQSK---GEATPKSAQPFTGSLYE  131

Query  139  VLSRDSDSAELDAWFAEPPLTRQEVWEGRRVTDFDPWALSSFICRSESPTFELFYQEYKR  198
            VLS++SDSA LDAW+AE PL  QE      V +F P+A++  + RS SPTFELFYQEY+ 
Sbjct  132  VLSKESDSAKLDAWIAELPLNLQEEGKEISVMGFSPRAVARPVLRSASPTFELFYQEYQS  191

Query  199  LGLKSLFVSGVMFEQFLTGLSFRKYGD------WVESQLLESLGNVMFFMLLYDMENLDK  252
            L LKS+F     FEQ+LT LSFRK +       +V SQLLE LGNV+FF  LY+   L+ 
Sbjct  192  LRLKSVFKFEPRFEQLLTRLSFRKQSILRKQQYRVKSQLLERLGNVLFFTSLYNQGCLEE  251

Query  253  FIKELM---DINVQSEDSKEKGKSRKERMLEYINSYIRNVYGRFLCTSKERYEQHKR  306
            FI+ L+   DI ++   + EK K++ ++M++YI+++  ++  ++L  +  R  + K+
Sbjct  252  FINALVEKEDIYLKMSPGEEKVKAH-QKMVNYIEAFCNKMTEKYLMPAASRHYKKKK  307

7) ECNA114_2125 in NC_017644


> NC_008563_P4|42|G41|117625234|YP_854317.1|Escherichia_coli_APEC_O1|-|45439..46389|-|APECO1_3494|hypothetical 
protein
Length=316

 Score =  236 bits (881),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 163/297 (55%), Positives = 217/297 (74%), Gaps = 18/297 (6%)

Query  24   CK--AWKDTQRILKRSGLVCR-ERSEPFDPEKHFDCYTVRYLYLLNIMALELKSDTRIK-  79
            CK  AWKDTQRILKRSGLV R ERSE+FDPEKHF+ YTVRYLYLLNI+AL ++S +++  
Sbjct  15   CKSQAWKDTQRILKRSGLVYRGERSESFDPEKHFNRYTVRYLYLLNIIALKIRSVSKFSC  74

Query  80   -VEVGQWYRMTGKRLSLNVPPFMLIPRNIRRKVDGFRQSRQSEDEATKNPPQPFTGSLYK  138
             +EVGQ  RMTGK+LSLN PPFMLIPR+IRRKVDGFRQS+   +EAT +++QPFTGSLY 
Sbjct  75   WIEVGQCHRMTGKHLSLNAPPFMLIPRSIRRKVDGFRQSK---GEATPKSAQPFTGSLYE  131

Query  139  VLSRDSDSAELDAWFADPPLTRQEVWEGRRVTDFDPWALSSFICRSESPTFELFYQEYKR  198
            VLS++SDSA LDAW+A+ PL  QE      V +F P+A++  + RS SPTFELFYQEY+ 
Sbjct  132  VLSKESDSAKLDAWIAELPLNLQEEGKEISVMGFSPRAVARPVLRSASPTFELFYQEYQS  191

Query  199  LGLKSLFVSGVMFEQFLTGLSFRKYGD------WVESQLLESLGNVMFFMLLYDMENLDK  252
            L LKS+F     FEQ+LT LSFRK +       +V SQLLE LGNV+FF  LY+   L+ 
Sbjct  192  LRLKSVFKFEPRFEQLLTRLSFRKQSILRKQQYRVKSQLLERLGNVLFFTSLYNQGCLEE  251

Query  253  FIKELM---DINVQSEDSKEKGKSRKERMLEYINSYIRNVYGRFLCTSKERYEQHKR  306
            FI+ L+   DI ++   + EK K++ ++M++YI+++  ++  ++L  +  R  + K+
Sbjct  252  FINALVEKEDIYLKMSPGEEKVKAH-QKMVNYIEAFCNKMTEKYLMPAASRHYKKKK  307