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Homologs of yscR gene of NC_004631_P1

473

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) yscR
( NP_456109.1 )

putative type III secretion protein

NC_003198
(Salmonella enterica CT18)

4e-86

100

2) STBHUCCB_13770
( YP_005216935.1 )

hypothetical protein

NC_016832
(Salmonella enterica P-stx-12)

4e-86

100

3) yscR
( NP_805090.1 )

type III secretion system protein

NC_004631
(Salmonella enterica Ty2)

4e-86

100

4) TY21A_06540
( YP_007925612.1 )

type III secretion system protein

NC_021176
(Salmonella enterica Ty21a)

4e-86

100

5) ssaR
( YP_008265618.1 )

flagellar biosynthesis protein FliP

NC_021820
(Salmonella enterica 08-1736)

2e-85

6) ssaR
( YP_005237289.1 )

type III secretion system protein

NC_016856
(Salmonella enterica 14028S)

2e-85

7) SEEH1578_16330
( YP_008247325.1 )

type III secretion system protein YscR

NC_021810
(Salmonella enterica 41578)

2e-85

8) yscR
( YP_005396816.1 )

type III secretion protein

NC_017046
(Salmonella enterica 798)

2e-85

9) SSPA1332
( YP_002142171.1 )

type III secretion system protein

NC_011147
(Salmonella enterica AKU12601)

2e-85

10) yscR
( YP_150685.1 )

type III secretion protein

NC_006511
(Salmonella enterica ATCC 9150)

2e-85

11) SU5_02035
( YP_006087669.1 )

Type III secretion inner membrane protein

NC_017623
(Salmonella enterica B182)

2e-85

12) ssaR
( YP_008255384.1 )

flagellar biosynthesis protein FliP

NC_021814
(Salmonella enterica CFSAN001921)

2e-85

13) CFSAN001992_04495
( YP_007470657.1 )

type III secretion system protein YscR

NC_020307
(Salmonella enterica CFSAN001992)

2e-85

14) ssaR
( YP_008260609.1 )

flagellar biosynthesis protein FliP

NC_021818
(Salmonella enterica CFSAN002050)

2e-85

15) ssaR
( YP_008249241.1 )

flagellar biosynthesis protein FliP

NC_021812
(Salmonella enterica CFSAN002069)

2e-85

16) epaP
( YP_002215713.1 )

type III secretion system protein

NC_011205
(Salmonella enterica CT_02021853)

2e-85

17) epaP
( YP_002114432.1 )

type III secretion system protein

NC_011094
(Salmonella enterica CVM19633)

2e-85

18) STMMW_14241
( YP_005232478.1 )

putative type III secretion protein

NC_016854
(Salmonella enterica D23580)

2e-85

19) ssaR
( NP_460384.1 )

type III secretion system protein

NC_003197
(Salmonella enterica LT2)

2e-85

20) yscR
( YP_002637868.1 )

type III secretion system protein

NC_012125
(Salmonella enterica RKS4594)

2e-85

21) ssaR
( YP_216427.1 )

type III secretion system protein

NC_006905
(Salmonella enterica SC-B67)

2e-85

22) SPAB_01906
( YP_001588129.1 )

type III secretion system protein

NC_010102
(Salmonella enterica SGSC4150; SPB7)

2e-85

23) yscR
( YP_005181263.1 )

putative type III secretion protein

NC_016810
(Salmonella enterica SL1344)

2e-85

24) epaP
( YP_002045422.1 )

type III secretion system protein

NC_011083
(Salmonella enterica SL476)

2e-85

25) ssaR
( YP_005242320.1 )

type III secretion system protein

NC_016857
(Salmonella enterica ST4/74)

2e-85

26) STMDT12_C14350
( YP_005247131.1 )

type III secretion system protein

NC_016860
(Salmonella enterica T000240)

2e-85

27) STU288_03415
( YP_007901788.1 )

type III secretion system protein YscR

NC_021151
(Salmonella enterica U288)

2e-85

28) ssaR
( YP_005251923.1 )

type III secretion system protein

NC_016863
(Salmonella enterica UK-1)

2e-85

29) ssaR
( YP_002226666.1 )

type III secretion system protein

NC_011274
(Salmonella enterica 287/91)

3e-85

30) SBOV14161
( YP_008505286.1 )

type III secretion apparatus protein, YscR/HrcR family

NC_022241
(Salmonella enterica 3114)

3e-85

31) ssaR
( YP_008480906.1 )

putative type III secretion protein

NC_022221
(Salmonella enterica CDC1983-67)

3e-85

32) ssaR
( YP_008308803.1 )

flagellar biosynthesis protein FliP

NC_021844
(Salmonella enterica CFSAN000189)

3e-85

33) ssaR
( YP_002243726.1 )

type III secretion system protein

NC_011294
(Salmonella enterica P125109)

3e-85

34) ssaR
( YP_005212444.1 )

putative type III secretion protein

NC_016831
(Salmonella enterica RKS5078)

3e-85

35) ssaR
( YP_008380650.1 )

flagellar biosynthesis protein FliP

NC_021984
(Salmonella enterica S06004)

3e-85

36) epaP
( YP_002040671.1 )

type III secretion system protein

NC_011080
(Salmonella enterica SL254)

3e-85

37) SN31241_24890
( YP_008360405.1 )

Virulence protein yscR

NC_021902
(Salmonella enterica USMARC-S3124.1)

3e-85

38) epaP
( YP_002146623.1 )

type III secretion system protein

NC_011149
(Salmonella enterica SL483)

5e-85

39) SARI_01563
( YP_001570599.1 )

type III secretion system protein

NC_010067
(Salmonella enterica RSK2980)

2e-84

40) SG1305
( YP_454985.1 )

type III secretion system protein

NC_007712
(Sodalis glossinidius morsitans)

2e-73

41) Sbal195_2278
( YP_001554706.1 )

type III secretion system protein

NC_009997
(Shewanella baltica OS195)

4e-59

42) Sbal678_2288
( YP_005273495.1 )

Yop virulence translocation R

NC_016901
(Shewanella baltica OS678)

4e-59

43) Sbal175_2391
( YP_006020948.1 )

Yop virulence translocation R

NC_017571
(Shewanella baltica BA175)

6e-59

44) Sbal117_2090
( YP_006037321.1 )

Yop virulence translocation R

NC_017579
(Shewanella baltica OS117)

6e-59

45) Sbal_1974
( YP_001050347.1 )

type III secretion system protein

NC_009052
(Shewanella baltica OS155)

6e-59

46) fliP1
( NP_991819.2 )

type III secretion system protein

NC_005810
(Yersinia pestis 91001)

5e-57

47) A1122_03785
( YP_005520452.1 )

type III secretion system protein YscR

NC_017168
(Yersinia pestis A1122)

5e-57

48) YPA_4012
( YP_653918.1 )

type III secretion system protein

NC_008150
(Yersinia pestis Antiqua)

5e-57

49) y0530
( NP_667867.1 )

type III secretion system protein

NC_004088
(Yersinia pestis KIM)

5e-57

50) YPN_3397
( YP_649324.1 )

type III secretion system protein

NC_008149
(Yersinia pestis Nepal516)

5e-57

51) YPDSF_3700
( YP_001165023.1 )

type III secretion system protein

NC_009381
(Yersinia pestis Pestoides F)

5e-57

52) YPTB0327
( YP_068873.2 )

type III secretion system protein

NC_006155
(Yersinia pseudotuberculosis IP 32953)

5e-57

53) YPTS_0351
( YP_001870797.1 )

type III secretion system protein

NC_010634
(Yersinia pseudotuberculosis PB1/+)

5e-57

54) YPK_3902
( YP_001722620.1 )

type III secretion system protein

NC_010465
(Yersinia pseudotuberculosis YPIII)

5e-57

55) epaP
( YP_001608228.1 )

type III secretion system protein

NC_010159
(Yersinia pestis Angola)

6e-57

56) YPO0270
( YP_002345352.1 )

type III secretion system protein

NC_003143
(Yersinia pestis CO92)

6e-57

57) YPD4_0235
( YP_005503447.1 )

putative type III secretion apparatus protein

NC_017154
(Yersinia pestis D106004)

6e-57

58) YPD8_0240
( YP_005507323.1 )

putative type III secretion apparatus protein

NC_017160
(Yersinia pestis D182038)

6e-57

59) YPZ3_0233
( YP_003566405.1 )

putative type III secretion apparatus protein

NC_014029
(Yersinia pestis Z176003)

6e-57

60) epaP
( YP_001402768.1 )

type III secretion system protein

NC_009708
(Yersinia pseudotuberculosis IP 31758)

6e-57

61) escR
( NP_902277.1 )

type III secretion system protein

NC_005085
(Chromobacterium violaceum ATCC 12472)

9e-57

62) SVI_2230
( YP_003556979.1 )

type III secretion system EscR protein

NC_014012
(Shewanella violacea DSS12)

9e-57

63) ETAC_04225
( YP_007628336.1 )

type III secretion system protein YscR

NC_020796
(Edwardsiella tarda C07-087)

2e-55

64) esaR
( YP_003294936.1 )

type three secretion apparatus protein R

NC_013508
(Edwardsiella tarda EIB202)

2e-55

65) esaR
( YP_005698435.1 )

protein EsaR

NC_017309
(Edwardsiella tarda FL6-60)

2e-55

66) YE105_C0338
( YP_004296539.1 )

type III secretion apparatus protein, YscR/HrcR family

NC_015224
(Yersinia enterocolitica 105.5R(r))

3e-55

67) Y11_35451
( YP_006007044.1 )

type III secretion inner membrane protein

NC_017564
(Yersinia enterocolitica Y11)

2e-54

68) ssaR
( YP_002924940.1 )

type III secretion system protein

NC_012751
(Candidatus Hamiltonella defensa T5A)

8e-51

69) NT01EI_0960
( YP_002932408.1 )

type III secretion apparatus protein, YscR/HrcR family, putative

NC_012779
(Edwardsiella ictaluri 93-146)

9e-50

70) HCH_03263
( YP_434447.1 )

type III secretion system protein

NC_007645
(Hahella chejuensis KCTC 2396)

3e-46

71) pscR
( YP_005975938.1 )

type III secretion system protein

NC_017548
(Pseudomonas aeruginosa M18)

1e-44

72) pscR
( YP_005980835.1 )

type III secretion system protein

NC_017549
(Pseudomonas aeruginosa NCGM2.S1)

1e-44

73) pscR
( NP_250384.1 )

type III secretion system protein

NC_002516
(Pseudomonas aeruginosa PAO1)

1e-44

74) ssaR
( YP_008132244.1 )

flagellar biosynthesis protein FliP

NC_021577
(Pseudomonas aeruginosa RP73)

1e-44

75) pscR
( YP_791552.1 )

type III secretion system protein

NC_008463
(Pseudomonas aeruginosa UCBPP-PA14)

1e-44

76) PADK2_17235
( YP_006483428.1 )

type III secretion system protein YscR

NC_018080
(Pseudomonas aeruginosa DK2)

2e-44

77) escR
( YP_003366517.1 )

T3SS structural protein EscR

NC_013716
(Citrobacter rodentium ICC168)

5e-44

78) G655_16715
( YP_007710183.1 )

type III secretion system protein YscR

NC_020912
(Pseudomonas aeruginosa B136-33)

7e-44

79) ECs4583
( NP_312610.1 )

type III secretion system protein

NC_002695
(Escherichia coli Sakai)

8e-44

80) escR
( YP_003236103.1 )

T3SS structure protein EscR

NC_013364
(Escherichia coli 11128)

9e-44

81) escR
( YP_003501889.1 )

type III secretion system EscR protein

NC_013941
(Escherichia coli CB9615)

9e-44

82) escR
( YP_002331425.1 )

type III secretion system protein

NC_011601
(Escherichia coli E2348/69)

9e-44

83) epaP
( YP_002273179.1 )

type III secretion system protein

NC_011353
(Escherichia coli EC4115)

9e-44

84) escR
( NP_290283.1 )

type III secretion system protein

NC_002655
(Escherichia coli EDL933)

9e-44

85) ECO55CA74_21290
( YP_006161363.1 )

type III secretion system protein YscR

NC_017656
(Escherichia coli RM12579)

9e-44

86) escR
( YP_003080495.1 )

type III secretion system protein

NC_013008
(Escherichia coli TW14359)

9e-44

87) CDCO157_4318
( YP_006315183.1 )

type III secretion system protein

NC_017906
(Escherichia coli Xuzhou21)

9e-44

88) escR
( YP_003232138.1 )

type III secretion system protein

NC_013361
(Escherichia coli 11368)

1e-43

89) escR
( YP_003223490.1 )

T3SS structure protein EscR

NC_013353
(Escherichia coli 12009)

1e-43

90) pscR
( YP_002441218.1 )

type III secretion system protein

NC_011770
(Pseudomonas aeruginosa LESB58)

4e-43

91) Dvul_2984
( YP_961183.1 )

type III secretion system protein

NC_008741
(Desulfovibrio vulgaris DP4)

3e-42

92) DVUA0122
( YP_009162.1 )

type III secretion system protein

NC_005863
(Desulfovibrio vulgaris Hildenborough)

3e-42

93) Deval_3224
( YP_005704003.1 )

Yop virulence translocation R

NC_017311
(Desulfovibrio vulgaris RCH1)

3e-42

94) DvMF_2439
( YP_002436848.1 )

type III secretion system protein

NC_011769
(Desulfovibrio vulgaris Miyazaki F)

4e-42

95) ascR
( YP_001144302.1 )

type III secretion system protein

NC_009350
(Aeromonas salmonicida A449)

7e-42

96) sctR
( YP_003039885.1 )

type iii secretion component protein sctr

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

3e-41

97) sctR
( NP_930977.1 )

type III secretion system protein

NC_005126
(Photorhabdus luminescens TTO1)

5e-41

98) yscR
( YP_436217.1 )

type III secretion system protein

NC_007645
(Hahella chejuensis KCTC 2396)

1e-40

99) NH44784_014541
( YP_008028549.1 )

Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components

NC_021285
(Achromobacter xylosoxidans NH44784-1996)

1e-40

100) yscR
( YP_004677245.1 )

Yop proteins translocation protein R

NC_015717
(Hyphomicrobium sp. MC1)

2e-40

101) YE105_P0026
( YP_004424928.1 )

type III secretion system protein

NC_015475
(Yersinia enterocolitica 105.5R(r))

2e-39

102) yscR
( YP_001004082.1 )

type III secretion system protein

NC_008791
(Yersinia enterocolitica 8081)

2e-39

103) Y11_p0741
( YP_006007922.1 )

type III secretion inner membrane protein

NC_017565
(Yersinia enterocolitica Y11)

2e-39

104) yscR
( NP_995367.1 )

type III secretion system protein

NC_005813
(Yersinia pestis 91001)

3e-39

105) yscR
( YP_001604476.1 )

type III secretion system protein

NC_010157
(Yersinia pestis Angola)

3e-39

106) YPA_CD0018
( YP_636810.1 )

type III secretion system protein

NC_008122
(Yersinia pestis Antiqua)

3e-39

107) yscR
( NP_395178.1 )

type III secretion system protein

NC_003131
(Yersinia pestis CO92)

3e-39

108) yscR
( YP_005503177.1 )

needle complex export protein

NC_017153
(Yersinia pestis D106004)

3e-39

109) yscR
( YP_005506960.1 )

needle complex export protein

NC_017157
(Yersinia pestis D182038)

3e-39

110) YPDSF_3973
( YP_001154602.1 )

type III secretion system protein

NC_009377
(Yersinia pestis Pestoides F)

3e-39

111) yscR
( YP_003560536.1 )

needle complex export protein

NC_014017
(Yersinia pestis Z176003)

3e-39

112) pYV0071
( YP_068480.1 )

type III secretion system protein

NC_006153
(Yersinia pseudotuberculosis IP 32953)

3e-39

113) YPTS_4289
( YP_001874689.1 )

type III secretion system protein

NC_010635
(Yersinia pseudotuberculosis PB1/+)

3e-39

114) sctR
( YP_007365636.1 )

type III secretion system protein

NC_020127
(Lawsonia intracellularis N343)

1e-38

115) SctR
( YP_594912.1 )

type III secretion system protein

NC_008011
(Lawsonia intracellularis PHE/MN1-00)

1e-38

116) bscR
( YP_006899833.1 )

type III secretion protein

NC_018829
(Bordetella bronchiseptica MO149)

2e-38

117) bscR
( YP_006625537.1 )

type III secretion protein

NC_018518
(Bordetella pertussis 18323)

2e-38

118) bscR
( YP_005590274.1 )

type III secretion system protein

NC_017223
(Bordetella pertussis CS)

2e-38

119) bscR
( NP_880884.1 )

type III secretion system protein

NC_002929
(Bordetella pertussis Tohama I)

2e-38

120) bscR
( YP_006967888.1 )

type III secretion protein

NC_019382
(Bordetella bronchiseptica 253)

2e-38

121) bscR
( NP_888177.1 )

type III secretion system protein

NC_002927
(Bordetella bronchiseptica RB50)

2e-38

122) bscR
( NP_884486.1 )

type III secretion system protein

NC_002928
(Bordetella parapertussis 12822)

2e-38

123) bscR
( YP_006895376.1 )

type III secretion protein

NC_018828
(Bordetella parapertussis Bpp5)

2e-38

124) hrcR
( YP_003774221.1 )

type III secretion HrcR transmembrane protein

NC_014323
(Herbaspirillum seropedicae SmR1)

7e-38

125) Acav_0515
( YP_004233005.1 )

Yop virulence translocation R

NC_015138
(Acidovorax avenae ATCC 19860)

9e-38

126) rhcR
( YP_002824496.1 )

type III secretion system protein

NC_012586
(Sinorhizobium fredii NGR234)

2e-37

127) USDA257_c21640
( YP_006397503.1 )

translocation protein y4yL

NC_018000
(Sinorhizobium fredii USDA 257)

2e-37

128) SFHH103_04957
( YP_005191562.1 )

RhcR-like, type III secretion system

NC_016815
(Sinorhizobium fredii HH103)

2e-37

129) sctR
( YP_004022632.1 )

type III secretion inner membrane protein SctR

NC_014718
(Burkholderia rhizoxinica HKI 454)

4e-37

130) hrcR
( YP_003539968.1 )

type III secretion system protein

NC_013971
(Erwinia amylovora ATCC 49946)

5e-37

131) hcrR
( YP_003529886.1 )

Harpin secretion protein HrcR

NC_013961
(Erwinia amylovora CFBP1430)

5e-37

132) C770_GR4pC1264
( YP_007193547.1 )

type III secretion apparatus protein, YscR/HrcR family

NC_019848
(Sinorhizobium meliloti GR4)

5e-37

133) D781_3938
( YP_007346313.1 )

type III secretion apparatus protein, YscR/HrcR family

NC_020064
(Serratia marcescens FGI94)

1e-36

134) hcrR
( YP_005804091.1 )

Harpin secretion protein HrcR

NC_017390
(Erwinia pyrifoliae DSM 12163)

7e-37

135) hrcR
( YP_002650074.1 )

type III secretion system protein

NC_012214
(Erwinia pyrifoliae Ep1/96)

7e-37

136) hrcR
( YP_005818255.1 )

type III secretion system protein

NC_017445
(Erwinia sp. Ejp617)

7e-37

137) hrcR
( YP_001906463.1 )

type III secretion system protein

NC_010694
(Erwinia tasmaniensis Et1/99)

2e-36

138) Marme_1071
( YP_004312182.1 )

Yop virulence translocation R

NC_015276
(Marinomonas mediterranea MMB-1)

4e-36

139) yscR
( YP_005082209.1 )

Yop proteins translocation protein R

NC_016642
(Pseudovibrio sp. FO-BEG1)

1e-35

140) fliP
( YP_004303272.1 )

flagellar transport protein FliP

NC_015259
(Polymorphum gilvum SL003B-26A1)

3e-35

141) hrcR
( YP_005210969.1 )

protein HrcR

NC_016830
(Pseudomonas fluorescens F113)

3e-35

142) fliP
( YP_006716878.1 )

flagellar biosynthesis protein FliP

NC_007498
(Pelobacter carbinolicus DSM 2380)

3e-35

143) hrcR
( YP_198720.1 )

type III secretion system protein

NC_006834
(Xanthomonas oryzae KACC10331)

3e-35

144) XOO_0095
( YP_449124.1 )

type III secretion system protein

NC_007705
(Xanthomonas oryzae MAFF 311018)

3e-35

145) epaP
( YP_001911274.1 )

type III secretion system protein

NC_010717
(Xanthomonas oryzae PXO99A)

3e-35

146) PSEBR_a5382
( YP_004356892.1 )

type III secretion protein

NC_015379
(Pseudomonas brassicacearum NFM421)

4e-35

147) hrcR
( YP_005636495.1 )

type III secretion protein HrcR

NC_017271
(Xanthomonas campestris 756C)

4e-35

148) XC_3016
( YP_244084.1 )

type III secretion system protein

NC_007086
(Xanthomonas campestris 8004)

4e-35

149) hrcR
( NP_636600.1 )

type III secretion system protein

NC_003902
(Xanthomonas campestris ATCC 33913)

4e-35

150) xccb100_3079
( YP_001904484.1 )

type III secretion system protein

NC_010688
(Xanthomonas campestris B100)

4e-35

151) hrcR
( NP_640757.1 )

type III secretion system protein

NC_003919
(Xanthomonas axonopodis 306)

4e-35

152) hrcR
( YP_004849999.1 )

type III secretion system protein

NC_016010
(Xanthomonas axonopodis F1)

4e-35

153) XAC29_02060
( YP_007634905.1 )

type III secretion system protein YscR

NC_020800
(Xanthomonas axonopodis Xac29-1)

4e-35

154) hrcR
( YP_362153.1 )

type III secretion system protein

NC_007508
(Xanthomonas campestris 85-10)

4e-35

155) hrcR
( YP_007648827.1 )

HrcR protein

NC_020815
(Xanthomonas citri Aw12879)

4e-35

156) Meso_0110
( YP_672680.1 )

type III secretion system protein

NC_008254
(Chelativorans sp. BNC1)

6e-35

157) hrcR
( YP_005630680.1 )

type III secretion protein HrcR

NC_017267
(Xanthomonas oryzae BLS256)

7e-35

158) hrcR
( YP_004754990.1 )

type III secretion inner membrane protein

NC_015856
(Collimonas fungivorans Ter331)

8e-35

159) sctR
( YP_003708474.1 )

type III secretion inner membrane protein SctR

NC_014225
(Waddlia chondrophila WSU 86-1044)

5e-34

160) DaAHT2_1718
( YP_003691029.1 )

flagellar biosynthetic protein FliP

NC_014216
(Desulfurivibrio alkaliphilus AHT2)

5e-34

161) fliP
( YP_002796342.1 )

flagellar biosynthesis protein FliP

NC_012559
(Laribacter hongkongensis HLHK9)

1e-33

162) rscR
( YP_002870380.1 )

type III secretion system protein

NC_012660
(Pseudomonas fluorescens SBW25)

1e-33

163) H045_00190
( YP_007395610.1 )

type III secretion system protein YscR

NC_020209
(Pseudomonas poae RE*1-1-14)

1e-33

164) fliP
( YP_780479.1 )

flagellar biosynthesis protein FliP

NC_008435
(Rhodopseudomonas palustris BisA53)

1e-33

165) fliP
( YP_002419488.1 )

flagellar biosynthesis protein FliP

NC_011757
(Methylobacterium chloromethanicum CM4)

3e-33

166) fliP
( YP_002961672.1 )

flagellar biosynthesis protein FliP

NC_012808
(Methylobacterium extorquens AM1)

3e-33

167) Btus_1509
( YP_003589366.1 )

flagellar biosynthetic protein FliP

NC_014098
(Kyrpidia tusciae DSM 2912)

3e-33

168) fliP
( YP_008104325.1 )

flagellar biosynthesis protein FliP

NC_021499
(Pseudomonas resinovorans NBRC 106553)

3e-33

169) fliP
( YP_006325174.1 )

flagellar biosynthetic protein FliP

NC_017911
(Pseudomonas fluorescens A506)

3e-33

170) fliP
( YP_002873959.1 )

flagellar biosynthesis protein FliP

NC_012660
(Pseudomonas fluorescens SBW25)

3e-33

171) hrcR
( YP_003883246.1 )

type III secretion inner membrane protein

NC_014500
(Dickeya dadantii 3937)

4e-33

172) fliP
( YP_001638112.1 )

flagellar biosynthesis protein FliP

NC_010172
(Methylobacterium extorquens PA1)

4e-33

173) MXAN_5647
( YP_633786.1 )

type III secretion system protein

NC_008095
(Myxococcus xanthus DK 1622)

4e-33

174) fliP
( YP_275528.1 )

flagellar biosynthesis protein FliP

NC_005773
(Pseudomonas syringae 1448A)

4e-33

175) fliP
( YP_236514.1 )

flagellar biosynthesis protein FliP

NC_007005
(Pseudomonas syringae B728a)

4e-33

176) C770_GR4pB210
( YP_007192280.1 )

Type III secretory pathway, component EscR

NC_019847
(Sinorhizobium meliloti GR4)

5e-33

177) fliP
( YP_007657206.1 )

flagellar biosynthesis protein FliP

NC_020829
(Pseudomonas denitrificans ATCC 13867)

1e-32

178) fliP
( YP_007030862.1 )

flagellar biosynthetic protein FliP

NC_019670
(Pseudomonas sp. UW4)

1e-32

179) fliP
( YP_001923318.1 )

flagellar biosynthesis protein FliP

NC_010725
(Methylobacterium populi BJ001)

1e-32

180) fliP
( YP_347281.1 )

flagellar biosynthesis protein FliP

NC_007492
(Pseudomonas fluorescens Pf0-1)

7e-33

181) fliP
( NP_782262.1 )

flagellar biosynthesis protein FliP

NC_004557
(Clostridium tetani E88)

9e-33

182) fliP
( YP_004846442.1 )

flagellar biosynthetic protein FliP

NC_016002
(Pseudogulbenkiania sp. NH8B)

9e-33

183) Dd1591_1885
( YP_003004214.1 )

type III secretion system protein

NC_012912
(Dickeya zeae Ech1591)

1e-32

184) PSEBR_a1491
( YP_004352690.1 )

flagellar biosynthetic protein

NC_015379
(Pseudomonas brassicacearum NFM421)

1e-32

185) fliP
( YP_005206995.1 )

protein FliP

NC_016830
(Pseudomonas fluorescens F113)

1e-32

186) fliP
( NP_791795.1 )

flagellar biosynthetic protein FliP

NC_004578
(Pseudomonas syringae DC3000)

1e-32

187) B488_02070
( YP_007232455.1 )

Flagellar biosynthesis protein FliP

NC_019907
(Liberibacter crescens BT-1)

2e-32

188) fliP
( YP_003066310.1 )

flagellar biosynthesis protein FliP

NC_012988
(Methylobacterium extorquens DM4)

2e-32

189) fliP
( YP_007998982.1 )

flagellar biosynthetic protein FliP

NC_021237
(Pseudomonas fluorescens CHA0)

2e-32

190) Psefu_1935
( YP_004474002.1 )

flagellar biosynthetic protein FliP

NC_015556
(Pseudomonas fulva 12-X)

2e-32

191) fliP
( YP_258777.2 )

flagellar biosynthesis protein FliP

NC_004129
(Pseudomonas protegens Pf-5)

2e-32

192) fliP
( YP_001266852.1 )

flagellar biosynthesis protein FliP

NC_009512
(Pseudomonas putida F1)

2e-32

193) YSA_08109
( YP_006388272.1 )

flagellar biosynthesis protein FliP

NC_017986
(Pseudomonas putida ND6)

2e-32

194) fliP
( YP_001750532.1 )

flagellar biosynthesis protein FliP

NC_010501
(Pseudomonas putida W619)

2e-32

195) TOPB45_1333
( YP_004628342.1 )

flagellar biosynthetic protein FliP

NC_015682
(Thermodesulfobacterium geofontis OPB45)

3e-32

196) hrcR
( YP_001984354.1 )

type III secretion system protein

NC_010996
(Rhizobium etli CIAT 652)

3e-32

197) Daud_1753
( YP_001717881.1 )

flagellar biosynthetic protein FliP

NC_010424
(Candidatus Desulforudis audaxviator MP104C)

3e-32

198) fliP
( YP_007398170.1 )

flagellar biosynthesis protein FliP

NC_020209
(Pseudomonas poae RE*1-1-14)

3e-32

199) fliP
( YP_005929380.1 )

protein FliP

NC_017530
(Pseudomonas putida BIRD-1)

3e-32

200) fliP
( YP_006532961.1 )

flagellar biosynthesis protein FliP

NC_018220
(Pseudomonas putida DOT-T1E)

3e-32

201) fliP
( YP_001670143.1 )

flagellar biosynthesis protein FliP

NC_010322
(Pseudomonas putida GB-1)

3e-32

202) L483_24060
( YP_008096573.1 )

flagellar biosynthesis protein FliP

NC_021491
(Pseudomonas putida H8234)

3e-32

203) fliP
( NP_746469.1 )

flagellar biosynthesis protein FliP

NC_002947
(Pseudomonas putida KT2440)

3e-32

204) fliP
( YP_007230563.1 )

flagellar biosynthesis protein FliP

NC_019905
(Pseudomonas putida PC9)

3e-32

205) RHE_PD00059
( NP_659978.1 )

type III secretion system protein

NC_004041
(Rhizobium etli CFN 42)

4e-32

206) PPS_3758
( YP_004703179.1 )

flagellar biosynthesis protein FliP

NC_015733
(Pseudomonas putida S16)

4e-32

207) Dalk_1007
( YP_002430178.1 )

flagellar biosynthetic protein FliP

NC_011768
(Desulfatibacillum alkenivorans AK-01)

5e-32

208) fliP
( YP_001188299.1 )

flagellar biosynthesis protein FliP

NC_009439
(Pseudomonas mendocina ymp)

5e-32

209) Ser39006_2919
( YP_008523301.1 )

Yop virulence translocation R

NC_022268
(Serratia sp. ATCC 39006)

7e-32

210) H650_14845
( YP_008108769.1 )

hypothetical protein

NC_021500
(Enterobacter sp. R4-368)

7e-32

211) MDS_1862
( YP_004379645.1 )

flagellar biosynthesis protein FliP

NC_015410
(Pseudomonas mendocina NK-01)

8e-32

212) Cwoe_0066
( YP_003391877.1 )

flagellar biosynthetic protein FliP

NC_013739
(Conexibacter woesei DSM 14684)

1e-31

213) JCM7686_1775
( YP_008404643.1 )

type III secretion protein

NC_022041
(Paracoccus aminophilus JCM 7686)

1e-31

214) Pmen_0046
( YP_001185552.1 )

type III secretion system protein

NC_009439
(Pseudomonas mendocina ymp)

2e-31

215) Deba_2315
( YP_003808271.1 )

flagellar biosynthetic protein FliP

NC_014365
(Desulfarculus baarsii DSM 2075)

2e-31

216) fliP
( YP_007710437.1 )

flagellar biosynthesis protein FliP

NC_020912
(Pseudomonas aeruginosa B136-33)

2e-31

217) fliP
( YP_006483676.1 )

flagellar biosynthesis protein FliP

NC_018080
(Pseudomonas aeruginosa DK2)

2e-31

218) fliP
( YP_002441550.1 )

flagellar biosynthesis protein FliP

NC_011770
(Pseudomonas aeruginosa LESB58)

2e-31

219) fliP
( YP_005976268.1 )

flagellar biosynthesis protein FliP

NC_017548
(Pseudomonas aeruginosa M18)

2e-31

220) fliP
( YP_005980573.1 )

flagellar biosynthesis protein

NC_017549
(Pseudomonas aeruginosa NCGM2.S1)

2e-31

221) fliP
( NP_250137.1 )

flagellar biosynthesis protein FliP

NC_002516
(Pseudomonas aeruginosa PAO1)

2e-31

222) M062_07750
( YP_008131995.1 )

flagellar biosynthesis protein FliP

NC_021577
(Pseudomonas aeruginosa RP73)

2e-31

223) fliP
( YP_791806.1 )

flagellar biosynthesis protein FliP

NC_008463
(Pseudomonas aeruginosa UCBPP-PA14)

2e-31

224) fliP
( YP_003496926.1 )

flagellar transport protein FliP

NC_013939
(Deferribacter desulfuricans SSM1)

3e-31

225) CCALI_00613
( YP_008088580.1 )

flagellar biosynthetic protein FliP

NC_021487
(Chthonomonas calidirosea T49)

3e-31

226) Dd586_1882
( YP_003333446.1 )

Yop virulence translocation R

NC_013592
(Dickeya dadantii Ech586)

3e-31

227) Hore_16720
( YP_002509417.1 )

flagellar biosynthetic protein FliP

NC_011899
(Halothermothrix orenii H 168)

3e-31

228) hrcR
( NP_791222.3 )

type III secretion protein HrcR

NC_004578
(Pseudomonas syringae DC3000)

3e-31

229) PC1_2212
( YP_003017787.1 )

Yop virulence translocation R

NC_012917
(Pectobacterium carotovorum PC1)

4e-31

230) PCC21_022910
( YP_006646947.1 )

type III secretion system protein

NC_018525
(Pectobacterium carotovorum PCC21)

4e-31

231) M301_1012
( YP_003673973.1 )

flagellar biosynthetic protein FliP

NC_014207
(Methylotenera versatilis 301)

4e-31

232) mlr8766
( NP_106869.1 )

type III secretion system protein

NC_002678
(Mesorhizobium loti MAFF303099)

4e-31

233) hrcR
( YP_050174.1 )

type III secretion system protein

NC_004547
(Pectobacterium atrosepticum SCRI1043)

6e-31

234) fliP
( YP_359852.1 )

flagellar biosynthesis protein FliP

NC_007503
(Carboxydothermus hydrogenoformans Z-2901)

7e-31

235) fliP
( YP_786224.1 )

flagellar biosynthesis protein FliP

NC_010645
(Bordetella avium 197N)

1e-30

236) fliP
( YP_004375656.1 )

flagellar biosynthesis protein FliP

NC_015391
(Carnobacterium sp. 17-4)

1e-30

237) fliP
( YP_587429.1 )

flagellar biosynthesis protein FliP

NC_007974
(Cupriavidus metallidurans CH34)

1e-30

238) hrcR
( YP_273544.2 )

type III secretion system protein

NC_005773
(Pseudomonas syringae 1448A)

3e-30

239) fliP
( YP_001452577.1 )

flagellar biosynthesis protein FliP

NC_009792
(Citrobacter koseri ATCC BAA-895)

3e-30

240) NT01EI_2431
( YP_002933836.1 )

flagellar biosynthetic protein FliP, putative

NC_012779
(Edwardsiella ictaluri 93-146)

4e-30

241) D782_1687
( YP_007339871.1 )

flagellar biosynthetic protein FliP

NC_020063
(Enterobacteriaceae bacterium FGI 57)

4e-30

242) Adeg_2033
( YP_003239961.1 )

flagellar biosynthetic protein FliP

NC_013385
(Ammonifex degensii KC4)

5e-30

243) HrcR
( YP_234300.1 )

type III secretion system protein

NC_007005
(Pseudomonas syringae B728a)

6e-30

244) rscR
( YP_006322231.1 )

type III secretion protein RscR

NC_017911
(Pseudomonas fluorescens A506)

6e-30

245) fliP
( YP_315368.1 )

flagellar biosynthesis protein FliP

NC_007404
(Thiobacillus denitrificans ATCC 25259)

6e-30

246) Arnit_1944
( YP_003656105.1 )

flagellar biosynthetic protein FliP

NC_014166
(Arcobacter nitrofigilis DSM 7299)

6e-30

247) fliP
( YP_008266182.1 )

flagellar biosynthesis protein FliP

NC_021820
(Salmonella enterica 08-1736)

1e-29

248) fliP
( YP_005237949.1 )

flagellar biosynthesis protein FliP

NC_016856
(Salmonella enterica 14028S)

1e-29

249) fliP
( YP_005397341.1 )

flagellar biosynthetic protein FliP

NC_017046
(Salmonella enterica 798)

1e-29

250) fliP
( YP_008254817.1 )

flagellar biosynthesis protein FliP

NC_021814
(Salmonella enterica CFSAN001921)

1e-29

251) STMMW_19591
( YP_005232998.1 )

flagellar biosynthetic protein FliP

NC_016854
(Salmonella enterica D23580)

1e-29

252) fliP
( NP_460932.1 )

flagellar biosynthesis protein FliP

NC_003197
(Salmonella enterica LT2)

1e-29

253) fliP
( YP_005181802.1 )

flagellar biosynthetic protein FliP

NC_016810
(Salmonella enterica SL1344)

1e-29

254) fliP
( YP_005242887.1 )

flagellar biosynthesis protein FliP

NC_016857
(Salmonella enterica ST4/74)

1e-29

255) fliP
( YP_005247696.1 )

flagellar biosynthesis protein FliP

NC_016860
(Salmonella enterica T000240)

1e-29

256) fliP
( YP_007902356.1 )

flagellar biosynthesis protein FliP

NC_021151
(Salmonella enterica U288)

1e-29

257) fliP
( YP_005252485.1 )

flagellar biosynthesis protein FliP

NC_016863
(Salmonella enterica UK-1)

1e-29

258) Mar181_0819
( YP_004480792.1 )

flagellar biosynthetic protein FliP

NC_015559
(Marinomonas posidonica IVIA-Po-181)

9e-30

259) fliP
( YP_003365583.1 )

flagellar biosynthetic protein FliP

NC_013716
(Citrobacter rodentium ICC168)

1e-29

260) fliP
( YP_002226128.1 )

flagellar biosynthesis protein FliP

NC_011274
(Salmonella enterica 287/91)

2e-29

261) SBOV20391
( YP_008505882.1 )

flagellar biosynthetic protein FliP

NC_022241
(Salmonella enterica 3114)

2e-29

262) fliP
( YP_008481487.1 )

flagellar biosynthetic protein flip precursor

NC_022221
(Salmonella enterica CDC1983-67)

2e-29

263) fliP
( YP_008308242.1 )

flagellar biosynthesis protein FliP

NC_021844
(Salmonella enterica CFSAN000189)

2e-29

264) fliP
( YP_007470075.1 )

flagellar biosynthesis protein FliP

NC_020307
(Salmonella enterica CFSAN001992)

2e-29

265) fliP
( YP_008261244.1 )

flagellar biosynthesis protein FliP

NC_021818
(Salmonella enterica CFSAN002050)

2e-29

266) STY2187
( NP_456540.1 )

flagellar biosynthetic protein FliP

NC_003198
(Salmonella enterica CT18)

2e-29

267) fliP
( YP_002215107.1 )

flagellar biosynthesis protein FliP

NC_011205
(Salmonella enterica CT_02021853)

2e-29

268) fliP
( YP_002115013.1 )

flagellar biosynthesis protein FliP

NC_011094
(Salmonella enterica CVM19633)

2e-29

269) STBHUCCB_9660
( YP_005216542.1 )

Flagellar biosynthetic protein fliP

NC_016832
(Salmonella enterica P-stx-12)

2e-29

270) fliP
( YP_002243159.1 )

flagellar biosynthesis protein FliP

NC_011294
(Salmonella enterica P125109)

2e-29

271) fliP
( YP_002637320.1 )

flagellar biosynthesis protein FliP

NC_012125
(Salmonella enterica RKS4594)

2e-29

272) fliP
( YP_005213029.1 )

flagellar biosynthetic protein flip precursor

NC_016831
(Salmonella enterica RKS5078)

2e-29

273) fliP
( YP_001570011.1 )

flagellar biosynthesis protein FliP

NC_010067
(Salmonella enterica RSK2980)

2e-29

274) fliP
( YP_008381167.1 )

flagellar biosynthesis protein FliP

NC_021984
(Salmonella enterica S06004)

2e-29

275) fliP
( YP_216971.1 )

flagellar biosynthesis protein FliP

NC_006905
(Salmonella enterica SC-B67)

2e-29

276) fliP
( YP_001587417.1 )

flagellar biosynthesis protein FliP

NC_010102
(Salmonella enterica SGSC4150; SPB7)

2e-29

277) fliP
( YP_002041244.1 )

flagellar biosynthesis protein FliP

NC_011080
(Salmonella enterica SL254)

2e-29

278) fliP
( YP_002146044.1 )

flagellar biosynthesis protein FliP

NC_011149
(Salmonella enterica SL483)

2e-29

279) fliP
( NP_804727.1 )

flagellar biosynthesis protein FliP

NC_004631
(Salmonella enterica Ty2)

2e-29

280) fliP
( YP_007925244.1 )

flagellar biosynthesis protein FliP

NC_021176
(Salmonella enterica Ty21a)

2e-29

281) SN31241_30780
( YP_008360994.1 )

Flagellar biosynthetic protein fliP

NC_021902
(Salmonella enterica USMARC-S3124.1)

2e-29

282) fliP
( YP_008533662.1 )

flagellar biosynthesis protein FliP

NC_022347
(Campylobacter coli CVM N29710)

3e-29

283) BN865_13040
( YP_008473941.1 )

Flagellar biosynthesis protein FliP

NC_022132
(Campylobacter coli 76339)

4e-29

284) Tlie_0100
( YP_004931943.1 )

flagellar biosynthetic protein FliP

NC_016148
(Thermovirga lienii DSM 17291)

5e-29

285) A464_2127
( YP_008322722.1 )

Flagellar biosynthesis protein FliP

NC_021870
(Salmonella bongori N268-08)

5e-29

286) fliP
( YP_004730660.1 )

flagellar biosynthetic protein FliP

NC_015761
(Salmonella bongori NCTC 12419)

5e-29

287) fliP
( YP_008247887.1 )

flagellar biosynthesis protein FliP

NC_021810
(Salmonella enterica 41578)

6e-29

288) SU5_02582
( YP_006088206.1 )

Flagellar biosynthesis protein FliP

NC_017623
(Salmonella enterica B182)

6e-29

289) fliP
( YP_008253121.1 )

flagellar biosynthesis protein FliP

NC_021812
(Salmonella enterica CFSAN002069)

6e-29

290) fliP
( YP_002046030.1 )

flagellar biosynthesis protein FliP

NC_011083
(Salmonella enterica SL476)

6e-29

291) Desaf_1174
( YP_005051174.1 )

flagellar biosynthetic protein FliP

NC_016629
(Desulfovibrio africanus Walvis Bay)

9e-29

292) fliP
( YP_001398263.1 )

flagellar biosynthesis protein FliP

NC_009707
(Campylobacter jejuni 269.97)

2e-28

293) fliP
( YP_001000505.1 )

flagellar biosynthesis protein FliP

NC_008787
(Campylobacter jejuni 81-176)

3e-28

294) ICDCCJ07001_789
( YP_004066342.1 )

flagellar biosynthesis protein

NC_014802
(Campylobacter jejuni ICDCCJ07001)

3e-28

295) fliP
( YP_008540417.1 )

flagellar biosynthesis protein FliP

NC_022352
(jejuni jejuni 00-2426)

3e-28

296) M635_08385
( YP_008294568.1 )

flagellar biosynthesis protein FliP

NC_021834
(Campylobacter jejuni 32488)

4e-28

297) fliP
( YP_001482343.1 )

flagellar biosynthesis protein FliP

NC_009839
(Campylobacter jejuni 81116)

4e-28

298) fliP
( YP_005656134.1 )

flagellar biosynthetic protein FliP

NC_017279
(Campylobacter jejuni IA3902)

4e-28

299) fliP
( YP_005657749.1 )

Flagellar biosynthetic protein FliP

NC_017280
(Campylobacter jejuni M1)

4e-28

300) fliP
( YP_002344227.1 )

flagellar biosynthesis protein FliP

NC_002163
(Campylobacter jejuni NCTC 11168)

4e-28

301) fliP
( YP_006632976.1 )

flagellar biosynthesis protein FliP

NC_018521
(Campylobacter jejuni NCTC 11168-BN148)

4e-28

302) fliP
( YP_006857870.1 )

flagellar biosynthesis protein FliP

NC_018709
(Campylobacter jejuni PT14)

4e-28

303) fliP
( YP_178909.1 )

flagellar biosynthesis protein FliP

NC_003912
(Campylobacter jejuni RM1221)

4e-28

304) fliP
( YP_005659435.1 )

Flagellar biosynthesis protein fliP

NC_017281
(Campylobacter jejuni S3)

4e-28

305) fliP
( YP_008562164.1 )

flagellar biosynthesis protein FliP

NC_022362
(jejuni jejuni 00-2425)

4e-28

306) fliP
( YP_008538743.1 )

flagellar biosynthesis protein FliP

NC_022351
(jejuni jejuni 00-2538)

4e-28

307) fliP
( YP_008542141.1 )

flagellar biosynthesis protein FliP

NC_022353
(jejuni jejuni 00-2544)

4e-28

308) Sulba_1139
( YP_006404010.1 )

flagellar biosynthetic protein FliP

NC_018002
(Sulfurospirillum barnesii SES-3)

4e-28

309) fliP
( YP_004833415.1 )

flagellar biosynthetic protein FliP

NC_015976
(Sphingobium sp. SYK-6)

4e-28

310) Sdel_1122
( YP_003304180.1 )

flagellar biosynthetic protein FliP

NC_013512
(Sulfurospirillum deleyianum DSM 6946)

7e-28

311) fliP
( YP_005093325.1 )

flagellar biosynthesis protein FliP

NC_016745
(Oceanimonas sp. GK1)

2e-27

312) Psest_1732
( YP_007239911.1 )

flagellar biosynthetic protein FliP

NC_019936
(Pseudomonas stutzeri RCH2)

2e-27

313) fliP
( YP_004589901.1 )

type III protein exporter membrane protein

NC_015662
(Buchnera aphidicola host: Cinara tujafilina)

3e-27

314) spaP
( YP_455764.1 )

surface presentation of antigens protein SpaP

NC_007712
(Sodalis glossinidius morsitans)

3e-27

315) fliP
( YP_002955997.1 )

flagellar biosynthesis protein FliP

NC_012796
(Desulfovibrio magneticus RS-1)

4e-27

316) fliP
( YP_006458384.1 )

flagellar biosynthesis protein FliP

NC_018028
(Pseudomonas stutzeri CCUG 29243)

4e-27

317) fliP
( YP_531396.1 )

flagellar biosynthesis protein FliP

NC_007925
(Rhodopseudomonas palustris BisB18)

5e-27

318) fliP
( NP_902797.1 )

flagellar biosynthesis protein FliP

NC_005085
(Chromobacterium violaceum ATCC 12472)

5e-27

319) fliP
( YP_007600043.1 )

flagellar biosynthesis protein

NC_020555
(Helicobacter cinaedi ATCC BAA-847)

8e-27

320) fliP
( NP_860223.1 )

flagellar biosynthesis protein FliP

NC_004917
(Helicobacter hepaticus ATCC 51449)

1e-26

321) fliP
( YP_005449752.1 )

flagellar biosynthesis protein FliP

NC_017082
(Bradyrhizobium sp. S23321)

7e-27

322) fliP
( YP_001173069.1 )

flagellar biosynthetic protein FliP

NC_009434
(Pseudomonas stutzeri A1501)

8e-27

323) fliP
( YP_006234595.1 )

flagellar biosynthesis protein FliP

NC_017761
(Helicobacter cinaedi PAGU611)

9e-27

324) fliP
( YP_006822033.1 )

flagellar biosynthetic protein

NC_018691
(Alcanivorax dieselolei B5)

2e-26

325) fliP
( YP_487384.1 )

flagellar biosynthesis protein FliP

NC_007778
(Rhodopseudomonas palustris HaA2)

2e-26

326) fliP
( NP_949227.1 )

flagellar biosynthesis protein FliP

NC_005296
(Rhodopseudomonas palustris CGA009)

3e-26

327) fliP
( YP_001993384.1 )

flagellar biosynthesis protein FliP

NC_011004
(Rhodopseudomonas palustris TIE-1)

3e-26

328) Thein_0183
( YP_004625032.1 )

flagellar biosynthetic protein FliP

NC_015681
(Thermodesulfatator indicus DSM 15286)

3e-26

329) fliP
( YP_001206945.1 )

flagellar biosynthesis protein FliP

NC_009445
(Bradyrhizobium sp. ORS278)

4e-26

330) fliP
( YP_007512251.1 )

flagellar transport protein FliP

NC_020453
(Bradyrhizobium oligotrophicum S58)

1e-25

331) fliP
( YP_002575556.1 )

flagellar biosynthesis protein FliP

NC_012039
(Campylobacter lari RM2100)

5e-26

332) fliP
( YP_004073913.1 )

flagellar biosynthesis protein

NC_014810
(Helicobacter felis ATCC 49179)

5e-26

333) fliP
( YP_001241367.1 )

flagellar biosynthesis protein FliP

NC_009485
(Bradyrhizobium sp. BTAi1)

5e-26

334) fliP
( NP_772456.1 )

flagellar biosynthesis protein FliP

NC_004463
(Bradyrhizobium japonicum USDA 110)

6e-26

335) S70_18345
( YP_006218162.1 )

flagellar biosynthesis protein FliP

NC_017731
(Providencia stuartii MRSN 2154)

6e-26

336) fliP
( YP_317744.1 )

flagellar biosynthesis protein FliP

NC_007406
(Nitrobacter winogradskyi Nb-255)

7e-26

337) fliP
( YP_001466589.1 )

flagellar biosynthesis protein FliP

NC_009802
(Campylobacter concisus 13826)

8e-26

338) fliP
( YP_005608752.1 )

flagellar biosynthetic protein

NC_017249
(Bradyrhizobium japonicum USDA 6)

9e-26

339) Rpdx1_1458
( YP_004107813.1 )

flagellar biosynthetic protein FliP

NC_014834
(Rhodopseudomonas palustris DX-1)

1e-25

340) fliP
( YP_568828.1 )

flagellar biosynthesis protein FliP

NC_007958
(Rhodopseudomonas palustris BisB5)

2e-25

341) fliP
( YP_576672.1 )

flagellar biosynthesis protein FliP

NC_007964
(Nitrobacter hamburgensis X14)

2e-25

342) fliP
( YP_005771256.1 )

flagellar biosynthesis protein FliP

NC_017361
(Helicobacter pylori SouthAfrica7)

2e-25

343) fliP
( YP_664645.1 )

flagellar biosynthesis protein FliP

NC_008229
(Helicobacter acinonychis Sheeba)

4e-25

344) ABED_0941
( YP_005538468.1 )

flagellar biosynthesis protein FliP

NC_017187
(Arcobacter butzleri ED-1)

4e-25

345) fliP
( YP_001489924.1 )

flagellar biosynthesis protein FliP

NC_009850
(Arcobacter butzleri RM4018)

4e-25

346) fliP
( YP_007372210.1 )

flagellar biosynthetic protein FliP

NC_020134
(Clostridium stercorarium DSM 8532)

4e-25

347) fliP
( YP_007678668.1 )

FliP

NC_020887
(Clostridium stercorarium DSM 8532)

4e-25

348) fliP
( YP_008330936.1 )

flagellar biosynthesis protein

NC_021878
(Arcobacter butzleri 7h1h)

4e-25

349) fliP
( YP_005775862.1 )

flagellar biosynthesis protein FliP

NC_017366
(Helicobacter pylori F32)

5e-25

350) fliP
( YP_005763615.1 )

flagellar biosynthetic protein FliP

NC_017355
(Helicobacter pylori v225d)

5e-25

351) fliP
( YP_005762174.1 )

flagellar biosynthesis protein FliP

NC_017354
(Helicobacter pylori 52)

5e-25

352) fliP
( YP_007017196.1 )

flagellar biosynthesis protein FliP

NC_019560
(Helicobacter pylori Aklavik117)

5e-25

353) fliP
( YP_003057436.1 )

flagellar biosynthesis protein FliP

NC_012973
(Helicobacter pylori B38)

5e-25

354) fliP
( YP_005766806.1 )

flagellar biosynthesis protein FliP

NC_017358
(Helicobacter pylori Cuz20)

5e-25

355) fliP
( YP_005778930.1 )

flagellar biosynthesis protein FliP

NC_017368
(Helicobacter pylori F16)

5e-25

356) fliP
( YP_005774392.1 )

flagellar biosynthesis protein FliP

NC_017365
(Helicobacter pylori F30)

5e-25

357) fliP
( YP_005777421.1 )

flagellar biosynthesis protein FliP

NC_017367
(Helicobacter pylori F57)

5e-25

358) fliP
( YP_627409.1 )

flagellar biosynthesis protein FliP

NC_008086
(Helicobacter pylori HPAG1)

5e-25

359) fliP
( YP_006219372.1 )

flagellar biosynthesis protein FliP

NC_017733
(Helicobacter pylori HUP-B14)

5e-25

360) fliP
( YP_005781967.1 )

flagellar biosynthesis protein FliP

NC_017372
(Helicobacter pylori India7)

5e-25

361) fliP
( NP_223343.1 )

flagellar biosynthesis protein FliP

NC_000921
(Helicobacter pylori J99)

5e-25

362) fliP
( YP_005772819.1 )

flagellar biosynthesis protein FliP

NC_017362
(Helicobacter pylori Lithuania75)

5e-25

363) HPOK310_0676
( YP_007538310.1 )

flagellar biosynthesis protein FliP

NC_020509
(Helicobacter pylori OK310)

5e-25

364) fliP
( YP_006228922.1 )

flagellar biosynthesis protein FliP

NC_017742
(Helicobacter pylori PeCan18)

5e-25

365) fliP
( YP_005788328.1 )

flagellar biosynthesis protein FliP

NC_017378
(Helicobacter pylori Puno120)

5e-25

366) fliP
( YP_005789888.1 )

flagellar biosynthesis protein FliP

NC_017379
(Helicobacter pylori Puno135)

5e-25

367) fliP
( YP_006227415.1 )

flagellar biosynthesis protein FliP

NC_017741
(Helicobacter pylori Shi112)

5e-25

368) fliP
( YP_006224302.1 )

flagellar biosynthesis protein FliP

NC_017739
(Helicobacter pylori Shi417)

5e-25

369) K747_07525
( YP_007979688.1 )

flagellar biosynthesis protein FliP

NC_021215
(Helicobacter pylori UM032)

5e-25

370) K751_03955
( YP_007983769.1 )

flagellar biosynthesis protein FliP

NC_021218
(Helicobacter pylori UM066)

5e-25

371) K748_00620
( YP_008336047.1 )

flagellar biosynthesis protein FliP

NC_021882
(Helicobacter pylori UM298)

5e-25

372) K749_02145
( YP_007980226.1 )

flagellar biosynthesis protein FliP

NC_021216
(Helicobacter pylori UM299)

5e-25

373) fliP
( YP_003516248.1 )

flagellar biosynthesis protein

NC_013949
(Helicobacter mustelae 12198)

5e-25

374) fliP
( YP_002772948.1 )

flagellar biosynthetic protein FliP precursor

NC_012491
(Brevibacillus brevis NBRC 100599)

5e-25

375) fliP
( YP_005783661.1 )

Flagellar biosynthesis protein

NC_017374
(Helicobacter pylori 2017)

6e-25

376) fliP
( YP_005770013.1 )

flagellar biosynthetic protein FliP

NC_017360
(Helicobacter pylori 35A)

6e-25

377) fliP
( YP_005765193.1 )

Flagellar biosynthesis protein

NC_017357
(Helicobacter pylori 908)

6e-25

378) fliP
( YP_003926954.1 )

flagellar biosynthesis protein FliP

NC_014555
(Helicobacter pylori PeCan4)

6e-25

379) fliP
( YP_008471673.1 )

flagellar biosynthetic protein FliP

NC_022130
(Helicobacter pylori SouthAfrica20)

6e-25

380) K750_05710
( YP_007982491.1 )

flagellar biosynthesis protein FliP

NC_021217
(Helicobacter pylori UM037)

6e-25

381) fliP
( YP_005785311.1 )

flagellar biosynthetic protein FliP

NC_017375
(Helicobacter pylori 83)

6e-25

382) fliP
( YP_005786841.1 )

flagellar biosynthesis protein FliP

NC_017376
(Helicobacter pylori Santal49)

6e-25

383) fliP
( YP_003728907.1 )

flagellar biosynthesis protein FliP

NC_014256
(Helicobacter pylori B8)

7e-25

384) fliP
( YP_002266267.1 )

flagellar biosynthesis protein FliP

NC_011333
(Helicobacter pylori G27)

7e-25

385) fliP
( YP_005780419.1 )

flagellar biosynthesis protein FliP

NC_017371
(Helicobacter pylori Gambia94/24)

7e-25

386) fliP
( YP_002301330.1 )

flagellar biosynthesis protein FliP

NC_011498
(Helicobacter pylori P12)

7e-25

387) fliP
( YP_005768321.1 )

flagellar biosynthesis protein FliP

NC_017359
(Helicobacter pylori Sat464)

7e-25

388) fliP
( YP_006225889.1 )

flagellar biosynthesis protein FliP

NC_017740
(Helicobacter pylori Shi169)

7e-25

389) fliP
( YP_001910157.1 )

flagellar biosynthesis protein FliP

NC_010698
(Helicobacter pylori Shi470)

7e-25

390) fliP
( YP_006338349.1 )

flagellar biosynthesis protein FliP

NC_017926
(Helicobacter pylori XZ274)

7e-25

391) fliP
( YP_006222976.1 )

flagellar biosynthesis protein FliP

NC_017737
(Helicobacter cetorum MIT 00-7128)

1e-24

392) fliP
( YP_006221253.1 )

flagellar biosynthesis protein FliP

NC_017735
(Helicobacter cetorum MIT 99-5656)

1e-24

393) fliP
( YP_007018934.1 )

flagellar biosynthesis protein FliP

NC_019563
(Helicobacter pylori Aklavik86)

1e-24

394) Fbal_1045
( YP_003912328.1 )

flagellar biosynthetic protein FliP

NC_014541
(Ferrimonas balearica DSM 9799)

1e-24

395) fliP
( YP_005793034.1 )

flagellar biosynthetic protein

NC_017382
(Helicobacter pylori 51)

9e-25

396) HPOK113_0695
( YP_007536809.1 )

flagellar biosynthesis protein FliP

NC_020508
(Helicobacter pylori OK113)

9e-25

397) HBZC1_14080
( YP_004608106.1 )

flagellar biosynthesis protein FliP

NC_015674
(Helicobacter bizzozeronii CIII-1)

2e-24

398) fliP
( YP_001561679.1 )

flagellar biosynthesis protein FliP

NC_010002
(Delftia acidovorans SPH-1)

2e-24

399) DelCs14_0586
( YP_004485980.1 )

flagellar biosynthetic protein FliP

NC_015563
(Delftia sp. Cs1-4)

2e-24

400) CtCNB1_0468
( YP_003276510.1 )

flagellar biosynthetic protein FliP

NC_013446
(Comamonas testosteroni CNB-1)

2e-24

401) fliP
( YP_006919819.1 )

flagellar biosynthetic protein FliP

NC_018870
(Thermacetogenium phaeum DSM 12270)

3e-24

402) fliP
( YP_987980.1 )

flagellar biosynthesis protein FliP

NC_008782
(Acidovorax sp. JS42)

3e-24

403) B565_1109
( YP_004391761.1 )

flagellar biosynthetic protein FliP

NC_015424
(Aeromonas veronii B565)

3e-24

404) Alide_3847
( YP_004128442.1 )

flagellar biosynthetic protein flip

NC_014910
(Alicycliphilus denitrificans BC)

3e-24

405) Alide2_4193
( YP_004390024.1 )

flagellar biosynthetic protein FliP

NC_015422
(Alicycliphilus denitrificans K601)

3e-24

406) fliP
( YP_002554504.1 )

flagellar biosynthesis protein flip

NC_011992
(Acidovorax ebreus TPSY)

4e-24

407) Mahau_0870
( YP_004462890.1 )

flagellar biosynthetic protein FliP

NC_015520
(Mahella australiensis 50-1 BON)

4e-24

408) fliP
( YP_855914.1 )

flagellar biosynthesis protein FliP

NC_008570
(Aeromonas hydrophila ATCC 7966)

6e-24

409) fliP
( YP_006747081.1 )

flagellar biosynthesis protein FliP

NC_018632
(Alteromonas macleodii ATCC 27126)

1e-23

410) fliP
( YP_006824044.1 )

flagellar biosynthesis protein FliP

NC_018692
(Alteromonas macleodii Black Sea 11)

1e-23

411) fliP
( YP_006798070.1 )

flagellar biosynthesis protein FliP

NC_018678
(Alteromonas macleodii English Channel 673)

1e-23

412) BN341_p1310
( YP_007043253.1 )

Flagellar biosynthesis protein FliP

NC_019674
(Helicobacter heilmannii ASB1.4)

1e-23

413) fliP
( YP_008042621.1 )

flagellar biosynthesis protein FliP

NC_021290
(Aeromonas hydrophila ML09-119)

1e-23

414) fliP
( YP_001982204.1 )

flagellar biosynthesis protein FliP

NC_010995
(Cellvibrio japonicus Ueda107)

1e-23

415) fliP
( YP_001885056.1 )

flagellar biosynthetic protein FliP

NC_010674
(Clostridium botulinum Eklund 17B)

7e-24

416) fliP
( YP_001920217.1 )

flagellar biosynthetic protein FliP

NC_010723
(Clostridium botulinum Alaska E43)

9e-24

417) fliP
( YP_006975941.1 )

flagellar biosynthesis protein FliP

NC_019393
(Alteromonas macleodii AltDE1)

2e-23

418) fliP
( YP_006801984.1 )

flagellar biosynthesis protein FliP

NC_018679
(Alteromonas macleodii Balearic Sea AD45)

2e-23

419) MADE_1005950
( YP_004426330.1 )

flagellar biosynthesis protein FliP

NC_011138
(Alteromonas macleodii Deep ecotype)

2e-23

420) fliP
( YP_008191968.1 )

flagellar biosynthesis protein FliP

NC_021716
(Alteromonas macleodii English Channel 615)

2e-23

421) fliP
( YP_008171083.1 )

flagellar biosynthesis protein FliP

NC_021710
(Alteromonas macleodii Ionian Sea U4)

2e-23

422) fliP
( YP_008195492.1 )

flagellar biosynthesis protein FliP

NC_021717
(Alteromonas macleodii Ionian Sea U7)

2e-23

423) fliP
( YP_008175213.1 )

flagellar biosynthesis protein FliP

NC_021712
(Alteromonas macleodii Ionian Sea U8)

2e-23

424) fliP
( YP_008183049.1 )

flagellar biosynthesis protein FliP

NC_021714
(Alteromonas macleodii Ionian Sea UM4b)

2e-23

425) fliP
( YP_008178996.1 )

flagellar biosynthesis protein FliP

NC_021713
(Alteromonas macleodii Ionian Sea UM7)

2e-23

426) fliP
( NP_908191.1 )

flagellar biosynthesis protein FliP

NC_005090
(Wolinella succinogenes DSM 1740)

2e-23

427) fliP
( YP_005093167.1 )

flagellar biosynthesis protein FliP

NC_016745
(Oceanimonas sp. GK1)

3e-23

428) Clocl_1950
( YP_005046476.1 )

flagellar biosynthetic protein FliP

NC_016627
(Clostridium clariflavum DSM 19732)

5e-23

429) fliP
( YP_001036912.1 )

flagellar biosynthesis protein FliP

NC_009012
(Clostridium thermocellum ATCC 27405)

1e-22

430) Clo1313_1739
( YP_005688247.1 )

flagellar biosynthetic protein FliP

NC_017304
(Clostridium thermocellum DSM 1313)

1e-22

431) Hipma_0871
( YP_004339900.1 )

flagellar biosynthetic protein FliP

NC_015318
(Hippea maritima DSM 10411)

5e-23

432) fliP
( YP_004467968.1 )

flagellar biosynthesis protein FliP

NC_015554
(Alteromonas sp. SN2)

6e-23

433) Ethha_2563
( YP_004092787.1 )

flagellar biosynthetic protein FliP

NC_014828
(Ethanoligenens harbinense YUAN-3)

2e-22

434) ETEC_3055
( YP_006116602.1 )

type III secretion system protein

NC_017633
(Escherichia coli ETEC H10407)

1e-22

435) Tthe_1440
( YP_003852038.1 )

flagellar biosynthetic protein FliP

NC_014410
(Thermoanaerobacterium thermosaccharolyticum DSM 571)

2e-22

436) Thethe_01405
( YP_007298744.1 )

flagellar biosynthetic protein FliP

NC_019970
(Thermoanaerobacterium thermosaccharolyticum M0795)

2e-22

437) Celgi_0475
( YP_004599565.1 )

flagellar biosynthetic protein FliP

NC_015671
(Cellvibrio gilvus ATCC 13127)

4e-22

438) Rhom172_2117
( YP_004825856.1 )

flagellar biosynthetic protein FliP

NC_015966
(Rhodothermus marinus SG0.5JP17-172)

5e-22

439) Rmar_0765
( YP_003290051.1 )

flagellar biosynthetic protein FliP

NC_013501
(Rhodothermus marinus DSM 4252)

7e-22

440) Sked_31060
( YP_003315837.1 )

flagellar biosynthetic protein FliP

NC_013521
(Sanguibacter keddieii DSM 10542)

7e-22

441) Desor_4879
( YP_004972795.1 )

flagellar biosynthetic protein FliP

NC_016584
(Desulfosporosinus orientis DSM 765)

1e-21

442) Tsac_1796
( YP_006392401.1 )

flagellar biosynthetic protein FliP

NC_017992
(Thermoanaerobacterium saccharolyticum JW/SL-YS485)

8e-22

443) fliP
( YP_004872445.1 )

flagellar biosynthesis protein FliP

NC_016041
(Glaciecola nitratireducens FR1064)

1e-21

444) Thexy_1317
( YP_004471022.1 )

flagellar biosynthetic protein FliP

NC_015555
(Thermoanaerobacterium xylanolyticum LX-11)

1e-21

445) fliP
( YP_001787969.1 )

flagellar biosynthesis protein FliP

NC_010520
(Clostridium botulinum Loch Maree)

2e-21

446) H04402_02743
( YP_005679281.1 )

flagellar biosynthesis protein FliP

NC_017299
(Clostridium botulinum H04402 065)

2e-21

447) fliP
( YP_001782265.1 )

flagellar biosynthesis protein FliP

NC_010516
(Clostridium botulinum Okra)

2e-21

448) fliP
( YP_002863640.1 )

flagellar biosynthesis protein FliP

NC_012658
(Clostridium botulinum 657)

3e-21

449) fliP
( YP_001384893.1 )

flagellar biosynthesis protein FliP

NC_009697
(Clostridium botulinum ATCC 19397)

3e-21

450) fliP
( YP_001255147.1 )

flagellar biosynthesis protein FliP

NC_009495
(Clostridium botulinum ATCC 3502)

3e-21

451) fliP
( YP_001388362.1 )

flagellar biosynthesis protein FliP

NC_009698
(Clostridium botulinum Hall)

3e-21

452) fliP
( YP_002805152.1 )

flagellar biosynthesis protein FliP

NC_012563
(Clostridium botulinum Kyoto)

3e-21

453) TOL_2496
( YP_007683132.1 )

flagellar biosynthetic protein FliP

NC_020888
(Thalassolituus oleivorans MIL-1)

4e-21

454) fliP
( YP_005675545.1 )

flagellar biosynthetic protein FliP

NC_017297
(Clostridium botulinum 230613)

6e-21

455) fliP
( YP_001391949.1 )

flagellar biosynthesis protein FliP

NC_009699
(Clostridium botulinum Langeland)

6e-21

456) hscR
( YP_003811251.1 )

type III secretory pathway protein

NC_014366
(gamma proteobacterium HdN1)

8e-21

457) Slip_0969
( YP_003702313.1 )

flagellar biosynthetic protein FliP

NC_014220
(Syntrophothermus lipocalidus DSM 12680)

2e-20

458) fliP
( YP_564662.1 )

flagellar biosynthesis protein FliP

NC_007954
(Shewanella denitrificans OS217)

2e-20

459) fliP
( YP_006364962.1 )

flagellar transport protein FliP

NC_017955
(Modestobacter marinus BC501)

2e-20

460) NAL212_0476
( YP_004293583.1 )

flagellar biosynthetic protein FliP

NC_015222
(Nitrosomonas sp. AL212)

2e-19

461) fliP
( YP_891929.1 )

flagellar biosynthesis protein FliP

NC_008599
(Campylobacter fetus 82-40)

2e-19

462) Thimo_0280
( YP_007242780.1 )

flagellar biosynthetic protein FliP

NC_019940
(Thioflavicoccus mobilis 8321)

2e-19

463) fliP
( YP_005951584.1 )

flagellar biosynthetic protein FliP

NC_017538
(Oligotropha carboxidovorans OM4)

2e-17

464) fliP
( YP_004633521.1 )

flagellar biosynthetic protein FliP

NC_015684
(Oligotropha carboxidovorans OM5)

2e-17

465) fliP
( YP_002288390.1 )

flagellar biosynthesis protein FliP

NC_011386
(Oligotropha carboxidovorans OM5; ATCC 49405)

2e-17

466) fliP
( NP_207479.1 )

flagellar biosynthesis protein FliP

NC_000915
(Helicobacter pylori 26695)

1e-16

467) fliP
( YP_921955.1 )

flagellar biosynthesis protein FliP

NC_008699
(Nocardioides sp. JS614)

4e-16

468) fliP
( YP_001019772.1 )

flagellar biosynthesis protein FliP

NC_008825
(Methylibium petroleiphilum PM1)

8e-16

469) MROS_2143
( YP_006528386.1 )

flagellar biosynthetic protein FliP

NC_018178
(Melioribacter roseus P3M-2)

8e-15

470) Calni_1332
( YP_004051403.1 )

flagellar biosynthetic protein flip

NC_014758
(Calditerrivibrio nitroreducens DSM 19672)

5e-14

471) fliP
( YP_002607556.1 )

flagellar biosynthesis protein FliP

NC_012115
(Nautilia profundicola AmH)

9e-13

472) Thivi_0368
( YP_006412562.1 )

flagellar biosynthetic protein FliP

NC_018012
(Thiocystis violascens DSM 198)

6e-09

473) Alvin_2932
( YP_003444867.1 )

flagellar biosynthetic protein FliP

NC_013851
(Allochromatium vinosum DSM 180)

1e-06

• Sequence Alignments

1) yscR in NC_003198


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  310 bits (1162),  Expect = 4e-86, Method: Compositional matrix adjust.
 Identities = 215/215 (100%), Positives = 215/215 (100%), Gaps = 0/215 (0%)

Query  1    MSLPDSPlqligilfllsilpliiVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60
            MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120
            VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180
            IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215
            MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

2) STBHUCCB_13770 in NC_016832


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  310 bits (1162),  Expect = 4e-86, Method: Compositional matrix adjust.
 Identities = 215/215 (100%), Positives = 215/215 (100%), Gaps = 0/215 (0%)

Query  1    MSLPDSPlqligilfllsilpliiVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60
            MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120
            VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180
            IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215
            MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

3) TY21A_06540 in NC_021176


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  310 bits (1162),  Expect = 4e-86, Method: Compositional matrix adjust.
 Identities = 215/215 (100%), Positives = 215/215 (100%), Gaps = 0/215 (0%)

Query  1    MSLPDSPlqligilfllsilpliiVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60
            MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120
            VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180
            IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215
            MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

4) yscR in NC_004631


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  310 bits (1162),  Expect = 4e-86, Method: Compositional matrix adjust.
 Identities = 215/215 (100%), Positives = 215/215 (100%), Gaps = 0/215 (0%)

Query  1    MSLPDSPlqligilfllsilpliiVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60
            MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120
            VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180
            IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215
            MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

5) ssaR in NC_021820


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  308 bits (1154),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 214/215 (99%), Positives = 215/215 (100%), Gaps = 0/215 (0%)

Query  1    MSLPDSPlqligilfllsilpliiVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL  60
            MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120
            VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180
            IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215
            MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

6) ssaR in NC_006905


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  308 bits (1154),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 214/215 (99%), Positives = 215/215 (100%), Gaps = 0/215 (0%)

Query  1    MSLPDSPlqligilfllsilpliiVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL  60
            MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120
            VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180
            IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215
            MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

7) ssaR in NC_021818


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  308 bits (1154),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 214/215 (99%), Positives = 215/215 (100%), Gaps = 0/215 (0%)

Query  1    MSLPDSPlqligilfllsilpliiVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL  60
            MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120
            VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180
            IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215
            MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

8) epaP in NC_011205


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  308 bits (1154),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 214/215 (99%), Positives = 215/215 (100%), Gaps = 0/215 (0%)

Query  1    MSLPDSPlqligilfllsilpliiVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL  60
            MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120
            VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180
            IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215
            MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

9) SEEH1578_16330 in NC_021810


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  308 bits (1154),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 214/215 (99%), Positives = 215/215 (100%), Gaps = 0/215 (0%)

Query  1    MSLPDSPlqligilfllsilpliiVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL  60
            MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120
            VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180
            IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215
            MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

10) SU5_02035 in NC_017623


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  308 bits (1154),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 214/215 (99%), Positives = 215/215 (100%), Gaps = 0/215 (0%)

Query  1    MSLPDSPlqligilfllsilpliiVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL  60
            MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120
            VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180
            IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215
            MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

11) ssaR in NC_021812


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  308 bits (1154),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 214/215 (99%), Positives = 215/215 (100%), Gaps = 0/215 (0%)

Query  1    MSLPDSPlqligilfllsilpliiVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL  60
            MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120
            VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180
            IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215
            MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

12) epaP in NC_011083


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  308 bits (1154),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 214/215 (99%), Positives = 215/215 (100%), Gaps = 0/215 (0%)

Query  1    MSLPDSPlqligilfllsilpliiVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL  60
            MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120
            VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180
            IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215
            MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

13) CFSAN001992_04495 in NC_020307


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  308 bits (1154),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 214/215 (99%), Positives = 215/215 (100%), Gaps = 0/215 (0%)

Query  1    MSLPDSPlqligilfllsilpliiVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL  60
            MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120
            VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180
            IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215
            MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

14) SSPA1332 in NC_011147


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  308 bits (1154),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 214/215 (99%), Positives = 215/215 (100%), Gaps = 0/215 (0%)

Query  1    MSLPDSPlqligilfllsilpliiVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL  60
            MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120
            VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180
            IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215
            MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

15) yscR in NC_006511


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  308 bits (1154),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 214/215 (99%), Positives = 215/215 (100%), Gaps = 0/215 (0%)

Query  1    MSLPDSPlqligilfllsilpliiVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL  60
            MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120
            VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180
            IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215
            MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

16) SPAB_01906 in NC_010102


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  308 bits (1154),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 214/215 (99%), Positives = 215/215 (100%), Gaps = 0/215 (0%)

Query  1    MSLPDSPlqligilfllsilpliiVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL  60
            MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120
            VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180
            IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215
            MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

17) yscR in NC_012125


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  308 bits (1154),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 214/215 (99%), Positives = 215/215 (100%), Gaps = 0/215 (0%)

Query  1    MSLPDSPlqligilfllsilpliiVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL  60
            MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120
            VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180
            IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215
            MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

18) epaP in NC_011094


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  308 bits (1154),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 214/215 (99%), Positives = 215/215 (100%), Gaps = 0/215 (0%)

Query  1    MSLPDSPlqligilfllsilpliiVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL  60
            MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120
            VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180
            IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215
            MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

19) ssaR in NC_016856


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  308 bits (1154),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 214/215 (99%), Positives = 215/215 (100%), Gaps = 0/215 (0%)

Query  1    MSLPDSPlqligilfllsilpliiVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL  60
            MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120
            VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180
            IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215
            MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

20) yscR in NC_017046


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  308 bits (1154),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 214/215 (99%), Positives = 215/215 (100%), Gaps = 0/215 (0%)

Query  1    MSLPDSPlqligilfllsilpliiVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL  60
            MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120
            VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180
            IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215
            MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

21) STMMW_14241 in NC_016854


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  308 bits (1154),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 214/215 (99%), Positives = 215/215 (100%), Gaps = 0/215 (0%)

Query  1    MSLPDSPlqligilfllsilpliiVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL  60
            MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120
            VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180
            IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215
            MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

22) ssaR in NC_003197


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  308 bits (1154),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 214/215 (99%), Positives = 215/215 (100%), Gaps = 0/215 (0%)

Query  1    MSLPDSPlqligilfllsilpliiVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL  60
            MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120
            VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180
            IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215
            MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

23) yscR in NC_016810


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  308 bits (1154),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 214/215 (99%), Positives = 215/215 (100%), Gaps = 0/215 (0%)

Query  1    MSLPDSPlqligilfllsilpliiVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL  60
            MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120
            VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180
            IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215
            MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

24) ssaR in NC_016857


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  308 bits (1154),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 214/215 (99%), Positives = 215/215 (100%), Gaps = 0/215 (0%)

Query  1    MSLPDSPlqligilfllsilpliiVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL  60
            MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120
            VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180
            IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215
            MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

25) STMDT12_C14350 in NC_016860


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  308 bits (1154),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 214/215 (99%), Positives = 215/215 (100%), Gaps = 0/215 (0%)

Query  1    MSLPDSPlqligilfllsilpliiVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL  60
            MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120
            VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180
            IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215
            MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

26) STU288_03415 in NC_021151


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  308 bits (1154),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 214/215 (99%), Positives = 215/215 (100%), Gaps = 0/215 (0%)

Query  1    MSLPDSPlqligilfllsilpliiVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL  60
            MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120
            VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180
            IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215
            MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

27) ssaR in NC_016863


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  308 bits (1154),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 214/215 (99%), Positives = 215/215 (100%), Gaps = 0/215 (0%)

Query  1    MSLPDSPlqligilfllsilpliiVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL  60
            MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120
            VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180
            IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215
            MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

28) ssaR in NC_021814


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  308 bits (1154),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 214/215 (99%), Positives = 215/215 (100%), Gaps = 0/215 (0%)

Query  1    MSLPDSPlqligilfllsilpliiVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL  60
            MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120
            VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180
            IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215
            MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

29) ssaR in NC_021844


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  307 bits (1152),  Expect = 3e-85, Method: Compositional matrix adjust.
 Identities = 213/215 (99%), Positives = 215/215 (100%), Gaps = 0/215 (0%)

Query  1    MSLPDSPlqligilfllsilpliiVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL  60
            MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRSL  120
            VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFR+L
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180
            IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215
            MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

30) SBOV14161 in NC_022241


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  307 bits (1152),  Expect = 3e-85, Method: Compositional matrix adjust.
 Identities = 213/215 (99%), Positives = 215/215 (100%), Gaps = 0/215 (0%)

Query  1    MSLPDSPlqligilfllsilpliiVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL  60
            MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRSL  120
            VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFR+L
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180
            IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215
            MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

31) ssaR in NC_011294


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  307 bits (1152),  Expect = 3e-85, Method: Compositional matrix adjust.
 Identities = 213/215 (99%), Positives = 215/215 (100%), Gaps = 0/215 (0%)

Query  1    MSLPDSPlqligilfllsilpliiVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL  60
            MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRSL  120
            VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFR+L
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180
            IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215
            MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

32) ssaR in NC_011274


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  307 bits (1152),  Expect = 3e-85, Method: Compositional matrix adjust.
 Identities = 213/215 (99%), Positives = 215/215 (100%), Gaps = 0/215 (0%)

Query  1    MSLPDSPlqligilfllsilpliiVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL  60
            MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRSL  120
            VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFR+L
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180
            IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215
            MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

33) ssaR in NC_022221


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  307 bits (1152),  Expect = 3e-85, Method: Compositional matrix adjust.
 Identities = 213/215 (99%), Positives = 215/215 (100%), Gaps = 0/215 (0%)

Query  1    MSLPDSPlqligilfllsilpliiVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL  60
            MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRSL  120
            VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFR+L
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180
            IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215
            MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

34) ssaR in NC_016831


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  307 bits (1152),  Expect = 3e-85, Method: Compositional matrix adjust.
 Identities = 213/215 (99%), Positives = 215/215 (100%), Gaps = 0/215 (0%)

Query  1    MSLPDSPlqligilfllsilpliiVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL  60
            MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRSL  120
            VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFR+L
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180
            IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215
            MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

35) epaP in NC_011080


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  307 bits (1152),  Expect = 3e-85, Method: Compositional matrix adjust.
 Identities = 213/215 (99%), Positives = 215/215 (100%), Gaps = 0/215 (0%)

Query  1    MSLPDSPlqligilfllsilpliiVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL  60
            MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRSL  120
            VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFR+L
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180
            IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215
            MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

36) SN31241_24890 in NC_021902


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  307 bits (1152),  Expect = 3e-85, Method: Compositional matrix adjust.
 Identities = 213/215 (99%), Positives = 215/215 (100%), Gaps = 0/215 (0%)

Query  1    MSLPDSPlqligilfllsilpliiVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL  60
            MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRSL  120
            VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFR+L
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180
            IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215
            MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

37) ssaR in NC_021984


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  307 bits (1152),  Expect = 3e-85, Method: Compositional matrix adjust.
 Identities = 213/215 (99%), Positives = 215/215 (100%), Gaps = 0/215 (0%)

Query  1    MSLPDSPlqligilfllsilpliiVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL  60
            MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRSL  120
            VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFR+L
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180
            IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215
            MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

38) epaP in NC_011149


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  307 bits (1149),  Expect = 5e-85, Method: Compositional matrix adjust.
 Identities = 213/215 (99%), Positives = 215/215 (100%), Gaps = 0/215 (0%)

Query  1    MSLPDSPlqligilfllsilpliiVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL  60
            MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120
            VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180
            IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAKLVQSFS  215
            MMVSPMTISLPFKLLIFLLAGGWDLTLA+LVQSFS
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

39) SARI_01563 in NC_010067


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  304 bits (1141),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 211/215 (99%), Positives = 214/215 (99%), Gaps = 0/215 (0%)

Query  1    MSLPDSPlqligilfllsilpliiVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL  60
            MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLSLFIMGPTLLAVKERWHPVQVADAPFWMSEWDSKALAPYRQFLQKNSEEKEASYFRNL  120
            VLSLFIMGPTLLAVKERWHPVQVA+APFW SEWDSKALAPYRQFLQKNSEEKEA+YFRNL
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180
            IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215
            MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

40) SG1305 in NC_007712


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  268 bits (1003),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 165/215 (77%), Positives = 197/215 (92%), Gaps = 0/215 (0%)

Query  1    MSLPDSPWQliillvvlsllplavvMGTSFLKLAVVLSILRNALGIQQVPPNMALYGLAL  60
            MSLPDSP QLI +L +LS+LPL +VMGTSFLKLAVV+SILRNALGIQQVPPN+ALYG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   ILSLFIMAPTALAVKAQWHPVAAPGDTPWASGWDGKALMPYRQFLRRNADEKEIRYFHQL  120
            +LSLFIM+PT LAVK +WHPV  +G   W+S WD+KAL PYRQFL++N++EKE  YF++L
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  VTKTWPEEARRRVRPDSLLILLPAFTVSQLSQAFRIGLLIYLPFLAIDLLVSNVLLAMGM  180
            + +TWPE+ +R+++PDSLLIL+PAFTVSQL+QAFRIGLLIYLPFLAIDLL+SN+LLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISLPFKLLIFMLAGGWDLILSQLVQSFS  215
            MMVSPMTISLPFKLLIF+LAGGWDL L+QLVQSFS
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

41) epaP in NC_021173


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  227 bits (845),  Expect = 5e-61, Method: Compositional matrix adjust.
 Identities = 129/217 (60%), Positives = 177/217 (82%), Gaps = 3/217 (1%)

Query  1    MSVLDQPVQLIVVLFALSILPLLMVLGSSFLKLAVVFALLRNALGTQQIPPNIALYGLAL  60
            MS+ D P+QLI +LF LSILPL++V+G+SFLKLAVVF++LRNALG QQ+PPNIALYG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLTLFIMAPVGLAIQDNLAEHPVQLDDKQF-TQQVETTILAPYRDFLARNTARAQVRFFA  119
            VL+LFIM+P  LA+++    HPVQ+ +  F T + ++  LAPYR+FL +N+   +  +F 
Sbjct  61   VLSLFIMGPTLLAVKERW--HPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFR  118

Query  120  DIGHRTWPEPYRNRIPDDSLIVLIPAFAISQLIEAFKIGLLLFLPFVAIDLIVSNVLLAM  179
            ++  RTWPE  + +I  DSL++LIPAF++SQL +AF+IGLL++LPF+AIDL++SN+LLAM
Sbjct  119  NLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAM  178

Query  180  GMMMVSPMTIALPLKLLVFVLINGWEKLLGQLVLSFH  216
            GMMMVSPMTI+LP+KLL+F+L  GW+  L+QLV SF 
Sbjct  179  GMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

42) Sbal195_2278 in NC_009997


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  220 bits (821),  Expect = 4e-59, Method: Compositional matrix adjust.
 Identities = 126/216 (59%), Positives = 177/216 (82%), Gaps = 1/216 (0%)

Query  1    MTLLDHPIQLIIMLFCLSLLPLFAVMGTSFLKLAIVFSMLRNALGIQQIPPNMAIYGLAL  60
            M+L D P+QLI +LF LS+LPL+ VMGTSFLKLA+VFS+LRNALGIQQ+PPN+A+YG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   ILTLFTMAPVGMAINDNLKATPIVFDAPNVFEQINTEAIAPYRAFLEKNTSNTQIEFFAN  120
            +L+LF M+P  +A+++   +  +  +AP    + ++ A+APYR FL+KN+ + + ++F N
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVA-GAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRN  119

Query  121  IGHKVWPEKYQQVLTKDSLLVMVPAFTMSQLIEAFKIGLLIYLPFVAIDLIVSNILLAMG  180
            +  + WPE  ++ +  DSLL+++PAFT+SQL +AF+IGLLIYLPF+AIDL++SNILLAMG
Sbjct  120  LIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMG  179

Query  181  MMMVSPMTIALPFKLLIFILMGGWEKLISQLMMSFS  216
            MMMVSPMTI+LPFKLLIF+L GGW+  ++QL+ SFS
Sbjct  180  MMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

43) Sbal678_2288 in NC_016901


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  220 bits (821),  Expect = 4e-59, Method: Compositional matrix adjust.
 Identities = 126/216 (59%), Positives = 177/216 (82%), Gaps = 1/216 (0%)

Query  1    MTLLDHPIQLIIMLFCLSLLPLFAVMGTSFLKLAIVFSMLRNALGIQQIPPNMAIYGLAL  60
            M+L D P+QLI +LF LS+LPL+ VMGTSFLKLA+VFS+LRNALGIQQ+PPN+A+YG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   ILTLFTMAPVGMAINDNLKATPIVFDAPNVFEQINTEAIAPYRAFLEKNTSNTQIEFFAN  120
            +L+LF M+P  +A+++   +  +  +AP    + ++ A+APYR FL+KN+ + + ++F N
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVA-GAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRN  119

Query  121  IGHKVWPEKYQQVLTKDSLLVMVPAFTMSQLIEAFKIGLLIYLPFVAIDLIVSNILLAMG  180
            +  + WPE  ++ +  DSLL+++PAFT+SQL +AF+IGLLIYLPF+AIDL++SNILLAMG
Sbjct  120  LIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMG  179

Query  181  MMMVSPMTIALPFKLLIFILMGGWEKLISQLMMSFS  216
            MMMVSPMTI+LPFKLLIF+L GGW+  ++QL+ SFS
Sbjct  180  MMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

44) Sbal175_2391 in NC_017571


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  220 bits (819),  Expect = 6e-59, Method: Compositional matrix adjust.
 Identities = 126/216 (59%), Positives = 177/216 (82%), Gaps = 1/216 (0%)

Query  1    MTLLDHPVQLIIMLFCLSLLPLFAVMGTSFLKLAIVFSMLRNALGIQQIPPNMAIYGLAL  60
            M+L D P+QLI +LF LS+LPL+ VMGTSFLKLA+VFS+LRNALGIQQ+PPN+A+YG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   ILTLFTMAPVGMAINDNLKATPIVFDAPNVFEQINTEAIAPYRAFLDKNTSNTQIEFFAN  120
            +L+LF M+P  +A+++   +  +  +AP    + ++ A+APYR FL+KN+ + + ++F N
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVA-GAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRN  119

Query  121  IGHKVWPEKYQQVLTKDSLLVMVPAFTMSQLIEAFKIGLLIYLPFVAIDLIVSNILLAMG  180
            +  + WPE  ++ +  DSLL+++PAFT+SQL +AF+IGLLIYLPF+AIDL++SNILLAMG
Sbjct  120  LIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMG  179

Query  181  MMMVSPMTIALPFKLLIFILMGGWEKLISQLMMSFS  216
            MMMVSPMTI+LPFKLLIF+L GGW+  ++QL+ SFS
Sbjct  180  MMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

45) Sbal117_2090 in NC_017579


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  220 bits (819),  Expect = 6e-59, Method: Compositional matrix adjust.
 Identities = 126/216 (59%), Positives = 177/216 (82%), Gaps = 1/216 (0%)

Query  1    MTLLDHPVQLIIMLFCLSLLPLFAVMGTSFLKLAIVFSMLRNALGIQQIPPNMAIYGLAL  60
            M+L D P+QLI +LF LS+LPL+ VMGTSFLKLA+VFS+LRNALGIQQ+PPN+A+YG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   ILTLFTMAPVGMAINDNLKATPIVFDAPNVFEQINTEAIAPYRAFLDKNTSNTQIEFFAN  120
            +L+LF M+P  +A+++   +  +  +AP    + ++ A+APYR FL+KN+ + + ++F N
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVA-GAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRN  119

Query  121  IGHKVWPEKYQQVLTKDSLLVMVPAFTMSQLIEAFKIGLLIYLPFVAIDLIVSNILLAMG  180
            +  + WPE  ++ +  DSLL+++PAFT+SQL +AF+IGLLIYLPF+AIDL++SNILLAMG
Sbjct  120  LIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMG  179

Query  181  MMMVSPMTIALPFKLLIFILMGGWEKLISQLMMSFS  216
            MMMVSPMTI+LPFKLLIF+L GGW+  ++QL+ SFS
Sbjct  180  MMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

46) Sbal_1974 in NC_009052


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  220 bits (819),  Expect = 6e-59, Method: Compositional matrix adjust.
 Identities = 126/216 (59%), Positives = 177/216 (82%), Gaps = 1/216 (0%)

Query  1    MTLLDHPVQLIIMLFCLSLLPLFAVMGTSFLKLAIVFSMLRNALGIQQIPPNMAIYGLAL  60
            M+L D P+QLI +LF LS+LPL+ VMGTSFLKLA+VFS+LRNALGIQQ+PPN+A+YG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   ILTLFTMAPVGMAINDNLKATPIVFDAPNVFEQINTEAIAPYRAFLDKNTSNTQIEFFAN  120
            +L+LF M+P  +A+++   +  +  +AP    + ++ A+APYR FL+KN+ + + ++F N
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVA-GAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRN  119

Query  121  IGHKVWPEKYQQVLTKDSLLVMVPAFTMSQLIEAFKIGLLIYLPFVAIDLIVSNILLAMG  180
            +  + WPE  ++ +  DSLL+++PAFT+SQL +AF+IGLLIYLPF+AIDL++SNILLAMG
Sbjct  120  LIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMG  179

Query  181  MMMVSPMTIALPFKLLIFILMGGWEKLISQLMMSFS  216
            MMMVSPMTI+LPFKLLIF+L GGW+  ++QL+ SFS
Sbjct  180  MMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

47) A1122_03785 in NC_017168


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  214 bits (795),  Expect = 5e-57, Method: Compositional matrix adjust.
 Identities = 127/215 (60%), Positives = 179/215 (84%), Gaps = 1/215 (0%)

Query  21   MELLNSSYQLIAllfmlsvlpllvvMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  80
            M L +S+ QLI++LF+LS+LPL++VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  81   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  140
            VL++FIM+P  L V+ R +  +++      + + D +AL PYR+FLQ+N++  +  +F +
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRN  119

Query  141  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  200
            +++  WPE  +  +KPDSLLIL+PAFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMG
Sbjct  120  LIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMG  179

Query  201  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  235
            MMMVSPMT+SLPFKLL+F+L +GW L L+QLV S+
Sbjct  180  MMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

48) YPA_4012 in NC_008150


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  214 bits (795),  Expect = 5e-57, Method: Compositional matrix adjust.
 Identities = 127/215 (60%), Positives = 179/215 (84%), Gaps = 1/215 (0%)

Query  21   MELLNSSYQLIAllfmlsvlpllvvMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  80
            M L +S+ QLI++LF+LS+LPL++VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  81   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  140
            VL++FIM+P  L V+ R +  +++      + + D +AL PYR+FLQ+N++  +  +F +
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRN  119

Query  141  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  200
            +++  WPE  +  +KPDSLLIL+PAFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMG
Sbjct  120  LIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMG  179

Query  201  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  235
            MMMVSPMT+SLPFKLL+F+L +GW L L+QLV S+
Sbjct  180  MMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

49) fliP1 in NC_005810


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  214 bits (795),  Expect = 5e-57, Method: Compositional matrix adjust.
 Identities = 127/215 (60%), Positives = 179/215 (84%), Gaps = 1/215 (0%)

Query  21   MELLNSSYQLIAllfmlsvlpllvvMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  80
            M L +S+ QLI++LF+LS+LPL++VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  81   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  140
            VL++FIM+P  L V+ R +  +++      + + D +AL PYR+FLQ+N++  +  +F +
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRN  119

Query  141  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  200
            +++  WPE  +  +KPDSLLIL+PAFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMG
Sbjct  120  LIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMG  179

Query  201  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  235
            MMMVSPMT+SLPFKLL+F+L +GW L L+QLV S+
Sbjct  180  MMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

50) y0530 in NC_004088


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  214 bits (795),  Expect = 5e-57, Method: Compositional matrix adjust.
 Identities = 127/215 (60%), Positives = 179/215 (84%), Gaps = 1/215 (0%)

Query  21   MELLNSSYQLIAllfmlsvlpllvvMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  80
            M L +S+ QLI++LF+LS+LPL++VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  81   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  140
            VL++FIM+P  L V+ R +  +++      + + D +AL PYR+FLQ+N++  +  +F +
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRN  119

Query  141  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  200
            +++  WPE  +  +KPDSLLIL+PAFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMG
Sbjct  120  LIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMG  179

Query  201  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  235
            MMMVSPMT+SLPFKLL+F+L +GW L L+QLV S+
Sbjct  180  MMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

51) YPN_3397 in NC_008149


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  214 bits (795),  Expect = 5e-57, Method: Compositional matrix adjust.
 Identities = 127/215 (60%), Positives = 179/215 (84%), Gaps = 1/215 (0%)

Query  21   MELLNSSYQLIAllfmlsvlpllvvMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  80
            M L +S+ QLI++LF+LS+LPL++VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  81   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  140
            VL++FIM+P  L V+ R +  +++      + + D +AL PYR+FLQ+N++  +  +F +
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRN  119

Query  141  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  200
            +++  WPE  +  +KPDSLLIL+PAFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMG
Sbjct  120  LIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMG  179

Query  201  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  235
            MMMVSPMT+SLPFKLL+F+L +GW L L+QLV S+
Sbjct  180  MMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

52) YPDSF_3700 in NC_009381


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  214 bits (795),  Expect = 5e-57, Method: Compositional matrix adjust.
 Identities = 127/215 (60%), Positives = 179/215 (84%), Gaps = 1/215 (0%)

Query  21   MELLNSSYQLIAllfmlsvlpllvvMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  80
            M L +S+ QLI++LF+LS+LPL++VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  81   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  140
            VL++FIM+P  L V+ R +  +++      + + D +AL PYR+FLQ+N++  +  +F +
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRN  119

Query  141  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  200
            +++  WPE  +  +KPDSLLIL+PAFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMG
Sbjct  120  LIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMG  179

Query  201  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  235
            MMMVSPMT+SLPFKLL+F+L +GW L L+QLV S+
Sbjct  180  MMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

53) YPTB0327 in NC_006155


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  214 bits (795),  Expect = 5e-57, Method: Compositional matrix adjust.
 Identities = 127/215 (60%), Positives = 179/215 (84%), Gaps = 1/215 (0%)

Query  21   MELLNSSYQLIAllfmlsvlpllvvMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  80
            M L +S+ QLI++LF+LS+LPL++VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  81   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  140
            VL++FIM+P  L V+ R +  +++      + + D +AL PYR+FLQ+N++  +  +F +
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRN  119

Query  141  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  200
            +++  WPE  +  +KPDSLLIL+PAFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMG
Sbjct  120  LIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMG  179

Query  201  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  235
            MMMVSPMT+SLPFKLL+F+L +GW L L+QLV S+
Sbjct  180  MMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

54) YPTS_0351 in NC_010634


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  214 bits (795),  Expect = 5e-57, Method: Compositional matrix adjust.
 Identities = 127/215 (60%), Positives = 179/215 (84%), Gaps = 1/215 (0%)

Query  21   MELLNSSYQLIAllfmlsvlpllvvMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  80
            M L +S+ QLI++LF+LS+LPL++VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  81   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  140
            VL++FIM+P  L V+ R +  +++      + + D +AL PYR+FLQ+N++  +  +F +
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRN  119

Query  141  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  200
            +++  WPE  +  +KPDSLLIL+PAFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMG
Sbjct  120  LIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMG  179

Query  201  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  235
            MMMVSPMT+SLPFKLL+F+L +GW L L+QLV S+
Sbjct  180  MMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

55) YPK_3902 in NC_010465


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  214 bits (795),  Expect = 5e-57, Method: Compositional matrix adjust.
 Identities = 127/215 (60%), Positives = 179/215 (84%), Gaps = 1/215 (0%)

Query  21   MELLNSSYQLIAllfmlsvlpllvvMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  80
            M L +S+ QLI++LF+LS+LPL++VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  81   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  140
            VL++FIM+P  L V+ R +  +++      + + D +AL PYR+FLQ+N++  +  +F +
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRN  119

Query  141  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  200
            +++  WPE  +  +KPDSLLIL+PAFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMG
Sbjct  120  LIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMG  179

Query  201  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  235
            MMMVSPMT+SLPFKLL+F+L +GW L L+QLV S+
Sbjct  180  MMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

56) epaP in NC_010159


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  213 bits (794),  Expect = 6e-57, Method: Compositional matrix adjust.
 Identities = 127/215 (60%), Positives = 179/215 (84%), Gaps = 1/215 (0%)

Query  1    MELLNSSYQLIAllfmlsvlpllvvMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60
            M L +S+ QLI++LF+LS+LPL++VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120
            VL++FIM+P  L V+ R +  +++      + + D +AL PYR+FLQ+N++  +  +F +
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRN  119

Query  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180
            +++  WPE  +  +KPDSLLIL+PAFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMG
Sbjct  120  LIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMG  179

Query  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215
            MMMVSPMT+SLPFKLL+F+L +GW L L+QLV S+
Sbjct  180  MMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

57) YPO0270 in NC_003143


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  213 bits (794),  Expect = 6e-57, Method: Compositional matrix adjust.
 Identities = 127/215 (60%), Positives = 179/215 (84%), Gaps = 1/215 (0%)

Query  1    MELLNSSYQLIAllfmlsvlpllvvMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60
            M L +S+ QLI++LF+LS+LPL++VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120
            VL++FIM+P  L V+ R +  +++      + + D +AL PYR+FLQ+N++  +  +F +
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRN  119

Query  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180
            +++  WPE  +  +KPDSLLIL+PAFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMG
Sbjct  120  LIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMG  179

Query  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215
            MMMVSPMT+SLPFKLL+F+L +GW L L+QLV S+
Sbjct  180  MMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

58) YPD4_0235 in NC_017154


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  213 bits (794),  Expect = 6e-57, Method: Compositional matrix adjust.
 Identities = 127/215 (60%), Positives = 179/215 (84%), Gaps = 1/215 (0%)

Query  1    MELLNSSYQLIAllfmlsvlpllvvMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60
            M L +S+ QLI++LF+LS+LPL++VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120
            VL++FIM+P  L V+ R +  +++      + + D +AL PYR+FLQ+N++  +  +F +
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRN  119

Query  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180
            +++  WPE  +  +KPDSLLIL+PAFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMG
Sbjct  120  LIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMG  179

Query  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215
            MMMVSPMT+SLPFKLL+F+L +GW L L+QLV S+
Sbjct  180  MMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

59) YPD8_0240 in NC_017160


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  213 bits (794),  Expect = 6e-57, Method: Compositional matrix adjust.
 Identities = 127/215 (60%), Positives = 179/215 (84%), Gaps = 1/215 (0%)

Query  1    MELLNSSYQLIAllfmlsvlpllvvMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60
            M L +S+ QLI++LF+LS+LPL++VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120
            VL++FIM+P  L V+ R +  +++      + + D +AL PYR+FLQ+N++  +  +F +
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRN  119

Query  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180
            +++  WPE  +  +KPDSLLIL+PAFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMG
Sbjct  120  LIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMG  179

Query  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215
            MMMVSPMT+SLPFKLL+F+L +GW L L+QLV S+
Sbjct  180  MMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

60) YPZ3_0233 in NC_014029


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  213 bits (794),  Expect = 6e-57, Method: Compositional matrix adjust.
 Identities = 127/215 (60%), Positives = 179/215 (84%), Gaps = 1/215 (0%)

Query  1    MELLNSSYQLIAllfmlsvlpllvvMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60
            M L +S+ QLI++LF+LS+LPL++VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120
            VL++FIM+P  L V+ R +  +++      + + D +AL PYR+FLQ+N++  +  +F +
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRN  119

Query  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180
            +++  WPE  +  +KPDSLLIL+PAFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMG
Sbjct  120  LIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMG  179

Query  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215
            MMMVSPMT+SLPFKLL+F+L +GW L L+QLV S+
Sbjct  180  MMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

61) epaP in NC_009708


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  213 bits (794),  Expect = 6e-57, Method: Compositional matrix adjust.
 Identities = 127/215 (60%), Positives = 179/215 (84%), Gaps = 1/215 (0%)

Query  1    MELLNSSYQLIAllfmlsvlpllvvMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLAL  60
            M L +S+ QLI++LF+LS+LPL++VMGT+FLKL+VVFS+LRNALG+QQVPPNIA+YG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLTIFIMAPVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFND  120
            VL++FIM+P  L V+ R +  +++      + + D +AL PYR+FLQ+N++  +  +F +
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRN  119

Query  121  IVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMG  180
            +++  WPE  +  +KPDSLLIL+PAFT+SQL +AF+IGLL++LPF+AIDL++SNILLAMG
Sbjct  120  LIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMG  179

Query  181  MMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSY  215
            MMMVSPMT+SLPFKLL+F+L +GW L L+QLV S+
Sbjct  180  MMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

62) escR in NC_005085


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  213 bits (791),  Expect = 9e-57, Method: Compositional matrix adjust.
 Identities = 117/203 (58%), Positives = 169/203 (84%), Gaps = 3/203 (1%)

Query  15   FALSILPLLVVLGTSFLKLAVVFALLRNALGIQQIPPNIALYGLALILTLFIMAPIGLEI  74
            F LSILPL++V+GTSFLKLAVVF++LRNALGIQQ+PPNIALYG+AL+L+LFIM+P  L +
Sbjct  15   FLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV  74

Query  75   QDNLIAHPIKIESPAF-IQQVESGVFTPYRVFLERNTAPEQVHFFADIGHQIWPEKYQQR  133
            ++    HP+++ +++F   + +S  ++PYR FL++N+   + ++F ++  + WPE  +++
Sbjct  75   KERW--HPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRK  132

Query  134  IPDNSLLVLMPAFTVSQLIEAFKIGLLLFLPFVAIDLVVSNVLLAMGMMMVSPMTISMPL  193
            I  +SLL+L+PAFTVSQL +AF+IGLL++LPF+AIDL++SN+LLAMGMMMVSPMTIS+P+
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  194  KLLVFVLMNGWEKLLGQLVLSFS  216
            KLL+F+L  GW+  L+QLV SFS
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSFS  215

63) SVI_2230 in NC_014012


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  213 bits (791),  Expect = 9e-57, Method: Compositional matrix adjust.
 Identities = 124/217 (58%), Positives = 178/217 (83%), Gaps = 3/217 (1%)

Query  1    MSVLDNPVQLIILLFCLSILPLFAVMGTSFLKLSIVLSMLRNALGIQQIPPNMAIYGLSL  60
            MS+ D+P+QLI +LF LSILPL+ VMGTSFLKL++V+S+LRNALGIQQ+PPN+A+YG++L
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   ILTLFIMAPIGMEINDNLKVHPIVFDSANI-IEQVNTLAIIPYRDFLEKNTSKTQLDFFA  119
            +L+LFIM+P  + +++    HP+   +A +   + ++ A+ PYR+FL+KN+   + ++F 
Sbjct  61   VLSLFIMGPTLLAVKERW--HPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFR  118

Query  120  NIGHKTWPDKYQDVLSKDSLFVMLPAFTMSQLIEAFKIGLLIYLPFVAIDLIVSNILLAM  179
            N+  +TWP+  +  +  DSL++++PAFT+SQL +AF+IGLLIYLPF+AIDL++SNILLAM
Sbjct  119  NLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAM  178

Query  180  GMMMVSPMTISLPFKLLIFILMGGWEKLVSQLMVSFS  216
            GMMMVSPMTISLPFKLLIF+L GGW+  ++QL+ SFS
Sbjct  179  GMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

64) ETAC_04225 in NC_020796


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  208 bits (774),  Expect = 2e-55, Method: Compositional matrix adjust.
 Identities = 123/214 (58%), Positives = 171/214 (80%), Gaps = 0/214 (0%)

Query  1    MSLTEQPAEliallvtlsllpllIVMGTSFLKLSVVFALLRNALGIQQIPPNIALYGLAL  60
            MSL + P +LI++L  LS+LPL+IVMGTSFLKL+VVF++LRNALGIQQ+PPNIALYG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   ILTLFIMTPVGTAVQARLADAPAEAQTTLLARLSDNTLDPYRQFLRQHTSATQLHFFRQV  120
            +L+LFIM P   AV+ R       +     +    ++L PYRQFL++++   + ++FR++
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  ATKSWPASVREQISDDSLLLLMPAFAVSQLVEAFQIGLLLFLPFIAIDLIVSNILLAMGM  180
              ++WP  ++ +I  DSLL+L+PAF+VSQL +AF+IGLL++LPF+AIDL++SNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISMPFKLLVFILVGGWDKLLGQLLLSY  214
            MMVSPMTIS+PFKLL+F+L GGWD  L+QL+ S+
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

65) esaR in NC_013508


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  208 bits (774),  Expect = 2e-55, Method: Compositional matrix adjust.
 Identities = 123/214 (58%), Positives = 171/214 (80%), Gaps = 0/214 (0%)

Query  1    MSLTEQPAEliallvtlsllpllIVMGTSFLKLSVVFALLRNALGIQQIPPNIALYGLAL  60
            MSL + P +LI++L  LS+LPL+IVMGTSFLKL+VVF++LRNALGIQQ+PPNIALYG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   ILTLFIMTPVGTAVQARLADAPAEAQTTLLARLSDNTLDPYRQFLRQHTSATQLHFFRQV  120
            +L+LFIM P   AV+ R       +     +    ++L PYRQFL++++   + ++FR++
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  ATKSWPASVREQISDDSLLLLMPAFAVSQLVEAFQIGLLLFLPFIAIDLIVSNILLAMGM  180
              ++WP  ++ +I  DSLL+L+PAF+VSQL +AF+IGLL++LPF+AIDL++SNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISMPFKLLVFILVGGWDKLLGQLLLSY  214
            MMVSPMTIS+PFKLL+F+L GGWD  L+QL+ S+
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

66) esaR in NC_017309


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  208 bits (774),  Expect = 2e-55, Method: Compositional matrix adjust.
 Identities = 123/214 (58%), Positives = 171/214 (80%), Gaps = 0/214 (0%)

Query  1    MSLTEQPAEliallvtlsllpllIVMGTSFLKLSVVFALLRNALGIQQIPPNIALYGLAL  60
            MSL + P +LI++L  LS+LPL+IVMGTSFLKL+VVF++LRNALGIQQ+PPNIALYG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   ILTLFIMTPVGTAVQARLADAPAEAQTTLLARLSDNTLDPYRQFLRQHTSATQLHFFRQV  120
            +L+LFIM P   AV+ R       +     +    ++L PYRQFL++++   + ++FR++
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  ATKSWPASVREQISDDSLLLLMPAFAVSQLVEAFQIGLLLFLPFIAIDLIVSNILLAMGM  180
              ++WP  ++ +I  DSLL+L+PAF+VSQL +AF+IGLL++LPF+AIDL++SNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISMPFKLLVFILVGGWDKLLGQLLLSY  214
            MMVSPMTIS+PFKLL+F+L GGWD  L+QL+ S+
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

67) YE105_C0338 in NC_015224


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  207 bits (771),  Expect = 3e-55, Method: Compositional matrix adjust.
 Identities = 117/195 (60%), Positives = 160/195 (83%), Gaps = 7/195 (3%)

Query  24   MVMGTSFLKLSIVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVHARLQDEPL  83
            +VMGTSFLKL++VFS+LRNALG+QQVPPNIA+YG+ALVL++FIM+P  L V  R +    
Sbjct  24   IVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWH----  79

Query  84   PNDLGALLYHIDE---HALEPYRDFLQRNTDAAQVHFFNDIVQTKWPVRYRDTIKPNSLL  140
            P ++++  +   E    AL PYR+FLQ+N++  + ++F ++++  WP   +  IKP+SLL
Sbjct  80   PVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLL  139

Query  141  ILMPAFTLSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMVSPITISLPFKLLIFIL  200
            IL+PAFT+SQLT+AF+IGLL+YLPF+AIDL++SNILLAMGMMMVSP+TISLPFKLLIF+L
Sbjct  140  ILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLL  199

Query  201  IDGWGLLLGQLVGSY  215
             +GW+L L+QLV S+
Sbjct  200  AGGWDLTLAQLVQSF  214

68) Y11_35451 in NC_017564


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  205 bits (762),  Expect = 2e-54, Method: Compositional matrix adjust.
 Identities = 116/195 (60%), Positives = 160/195 (83%), Gaps = 7/195 (3%)

Query  24   MVMGTSFLKLSIVLSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVHARLQDEPL  83
            +VMGTSFLKL++V+S+LRNALG+QQVPPNIA+YG+ALVL++FIM+P  L V  R +    
Sbjct  24   IVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWH----  79

Query  84   PNDLGALLYHIDE---HALEPYRDFLQRNTDAAQVHFFNDIVQTKWPVRYRDTIKPNSLL  140
            P ++++  +   E    AL PYR+FLQ+N++  + ++F ++++  WP   +  IKP+SLL
Sbjct  80   PVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLL  139

Query  141  ILMPAFTLSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMVSPITISLPFKLLIFIL  200
            IL+PAFT+SQLT+AF+IGLL+YLPF+AIDL++SNILLAMGMMMVSP+TISLPFKLLIF+L
Sbjct  140  ILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLL  199

Query  201  IDGWGLLLGQLVGSY  215
             +GW+L L+QLV S+
Sbjct  200  AGGWDLTLAQLVQSF  214

69) ssaR in NC_012751


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  193 bits (716),  Expect = 8e-51, Method: Compositional matrix adjust.
 Identities = 118/192 (62%), Positives = 153/192 (80%), Gaps = 1/192 (0%)

Query  24   VVMGTCFLKLSVVFSLLRNALGVQQTPPNIAIYGLALVLTIFIMAPVGLEVNESLKGEKL  83
            +VMGT FLKL+VVFS+LRNALG+QQ PPNIA+YG+ALVL++FIM+P  L V+E     ++
Sbjct  24   IVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQV  83

Query  84   SQDFGTFVEQINSKALDPYRQFLLHNTSSEQINFFSDMIKNNWPKKYRDKVASDSLLILM  143
            +        + +SKAL PYRQFL  N+   + N+F ++IK  WP   + K+ +DSLLIL+
Sbjct  84   AGA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILI  142

Query  144  PAFTVSQLIEAFKIGLLLYLPFVAIDLIVSNILLAmgmmmmspmTISLPFKILIFLLVGG  203
            PAFTVSQL +AF+IGLL+YLPF+AIDL++SNILLAMGMMM+SPMTISLPFK+LIFLL GG
Sbjct  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202

Query  204  WDMILGQLAGSY  215
            WD+ L+QL  S+
Sbjct  203  WDLTLAQLVQSF  214

70) NT01EI_0960 in NC_012779


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  189 bits (703),  Expect = 9e-50, Method: Compositional matrix adjust.
 Identities = 124/214 (58%), Positives = 172/214 (81%), Gaps = 0/214 (0%)

Query  1    MSLTEQPAEliallvtlsllpllIVMGTSFLKLSVVFALLRNALGIQQIPPNlalyglal  60
            MSL + P +LI++L  LS+LPL+IVMGTSFLKL+VVF++LRNALGIQQ+PPN+ALYG+AL
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   iltlFIMTPVGTAVQARLADAPAQAQTTLLSRLSDNTLDPYRQFLRQHTSAKQLKFFRQV  120
            +L+LFIM P   AV+ R       +     S    ++L PYRQFL++++  K+ ++FR++
Sbjct  61   VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  121  ATKSWPASVREKISDNSLLLLMPAFAVSQLVEAFQIGLLLFLPFIAIDLIVSNILLAMGM  180
              ++WP  ++ KI  +SLL+L+PAF+VSQL +AF+IGLL++LPF+AIDL++SNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  181  MMVSPMTISMPFKLLVFILVGGWDKILGQLLLSY  214
            MMVSPMTIS+PFKLL+F+L GGWD  L+QL+ S+
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

71) HCH_03263 in NC_007645


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  178 bits (658),  Expect = 3e-46, Method: Compositional matrix adjust.
 Identities = 110/219 (51%), Positives = 163/219 (75%), Gaps = 10/219 (4%)

Query  1    MTLPDPFYLTLGLAGI----ALIPFFAVMATSFVKIAVVLGLLRNALGIQQIPPNMALYG  56
            M+LPD+    L L GI    +++P++ VM+TSF+K+AVV+++LRNALGIQQ+PPN+ALYG
Sbjct  1    MSLPDS---PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYG  57

Query  57   LAIILTAYIMAPVGISAYNELSTKPISLENTQELKALMDTAS-QPYKEFLQRHGSEDEQT  115
            +A++L+ +IM+P  ++  +     P+ +  +    +  D+ +  PY++FLQ+++ E E  
Sbjct  58   FALVLSLFIMGPTLLAVKERW--HPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEAN  115

Query  116  FFHETAAEIWPEDVAKGLEKDSFFVLIPAFTASELTSAFEIGFLIYLPFLAIDLIISNIL  175
            +F++     WPED+ + +  DS+++LIPAFT S+LT AF IG+LIYLPFLAIDL+ISNIL
Sbjct  116  YFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNIL  175

Query  176  LAMGMMMVSPMTISLPFKLLLFVLMDGWTRLIHGLVLAY  214
            LAMGMMMVSPMTISLPFKLL+F+L +GW   +  LV ++
Sbjct  176  LAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

72) pscR in NC_017548


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  172 bits (637),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 108/198 (55%), Positives = 159/198 (81%), Gaps = 3/198 (1%)

Query  20   VPFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLR  79
            +P+I VM+TSF+K++VVFS+LRNALG+QQ+PPN+A+YG+A++LSL++M+P  +A ++  R
Sbjct  20   LPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKE--R  77

Query  80   NHDVSLSDSA-SVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDS  138
             H V +++++         ++APYR+FL+++ +E+E  +F +  ++ WP +   ++ PDS
Sbjct  78   WHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDS  137

Query  139  LLILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllf  198
            LLIL+PAFTVS+LT+AF IG+LIYLPF+AIDL+ISNILLAMGMMMVSPMTISLPFKLL+F
Sbjct  138  LLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIF  197

Query  199  vllDGWARLTHGLVISYG  216
            +L +GW      LV S++
Sbjct  198  LLAGGWDLTLAQLVQSFS  215

73) pscR in NC_017549


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  172 bits (637),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 108/198 (55%), Positives = 159/198 (81%), Gaps = 3/198 (1%)

Query  20   VPFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLR  79
            +P+I VM+TSF+K++VVFS+LRNALG+QQ+PPN+A+YG+A++LSL++M+P  +A ++  R
Sbjct  20   LPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKE--R  77

Query  80   NHDVSLSDSA-SVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDS  138
             H V +++++         ++APYR+FL+++ +E+E  +F +  ++ WP +   ++ PDS
Sbjct  78   WHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDS  137

Query  139  LLILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllf  198
            LLIL+PAFTVS+LT+AF IG+LIYLPF+AIDL+ISNILLAMGMMMVSPMTISLPFKLL+F
Sbjct  138  LLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIF  197

Query  199  vllDGWARLTHGLVISYG  216
            +L +GW      LV S++
Sbjct  198  LLAGGWDLTLAQLVQSFS  215

74) pscR in NC_002516


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  172 bits (637),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 108/198 (55%), Positives = 159/198 (81%), Gaps = 3/198 (1%)

Query  20   VPFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLR  79
            +P+I VM+TSF+K++VVFS+LRNALG+QQ+PPN+A+YG+A++LSL++M+P  +A ++  R
Sbjct  20   LPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKE--R  77

Query  80   NHDVSLSDSA-SVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDS  138
             H V +++++         ++APYR+FL+++ +E+E  +F +  ++ WP +   ++ PDS
Sbjct  78   WHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDS  137

Query  139  LLILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllf  198
            LLIL+PAFTVS+LT+AF IG+LIYLPF+AIDL+ISNILLAMGMMMVSPMTISLPFKLL+F
Sbjct  138  LLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIF  197

Query  199  vllDGWARLTHGLVISYG  216
            +L +GW      LV S++
Sbjct  198  LLAGGWDLTLAQLVQSFS  215

75) ssaR in NC_021577


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  172 bits (637),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 108/198 (55%), Positives = 159/198 (81%), Gaps = 3/198 (1%)

Query  20   VPFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLR  79
            +P+I VM+TSF+K++VVFS+LRNALG+QQ+PPN+A+YG+A++LSL++M+P  +A ++  R
Sbjct  20   LPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKE--R  77

Query  80   NHDVSLSDSA-SVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDS  138
             H V +++++         ++APYR+FL+++ +E+E  +F +  ++ WP +   ++ PDS
Sbjct  78   WHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDS  137

Query  139  LLILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllf  198
            LLIL+PAFTVS+LT+AF IG+LIYLPF+AIDL+ISNILLAMGMMMVSPMTISLPFKLL+F
Sbjct  138  LLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIF  197

Query  199  vllDGWARLTHGLVISYG  216
            +L +GW      LV S++
Sbjct  198  LLAGGWDLTLAQLVQSFS  215

76) pscR in NC_008463


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  172 bits (637),  Expect = 1e-44, Method: Compositional matrix adjust.
 Identities = 108/198 (55%), Positives = 159/198 (81%), Gaps = 3/198 (1%)

Query  20   VPFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLR  79
            +P+I VM+TSF+K++VVFS+LRNALG+QQ+PPN+A+YG+A++LSL++M+P  +A ++  R
Sbjct  20   LPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKE--R  77

Query  80   NHDVSLSDSA-SVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDS  138
             H V +++++         ++APYR+FL+++ +E+E  +F +  ++ WP +   ++ PDS
Sbjct  78   WHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDS  137

Query  139  LLILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllf  198
            LLIL+PAFTVS+LT+AF IG+LIYLPF+AIDL+ISNILLAMGMMMVSPMTISLPFKLL+F
Sbjct  138  LLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIF  197

Query  199  vllDGWARLTHGLVISYG  216
            +L +GW      LV S++
Sbjct  198  LLAGGWDLTLAQLVQSFS  215

77) PADK2_17235 in NC_018080


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  172 bits (636),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 108/198 (55%), Positives = 158/198 (80%), Gaps = 3/198 (1%)

Query  20   VPFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLR  79
            +P+I VM+TSF+K++VVFS+LRNALG+QQ+PPN+A+YG+A++LSL++M+P  +A ++  R
Sbjct  20   LPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKE--R  77

Query  80   NHDVSLNDSA-SVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDS  138
             H V + +++         ++APYR+FL+++ +E+E  +F +  ++ WP +   ++ PDS
Sbjct  78   WHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDS  137

Query  139  LLILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllf  198
            LLIL+PAFTVS+LT+AF IG+LIYLPF+AIDL+ISNILLAMGMMMVSPMTISLPFKLL+F
Sbjct  138  LLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIF  197

Query  199  vllDGWARLTHGLVISYG  216
            +L +GW      LV S++
Sbjct  198  LLAGGWDLTLAQLVQSFS  215

78) escR in NC_013716


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  170 bits (630),  Expect = 5e-44, Method: Compositional matrix adjust.
 Identities = 93/180 (52%), Positives = 147/180 (82%), Gaps = 5/180 (2%)

Query  31   GTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTIFIMSPIILQINDNISQEPINYT  90
            GTSFLK+++V++IL+NALGIQQVPPN+AL + +L+L++FIM+P +L +++    +P++ +
Sbjct  27   GTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKER--WHPVQVA  84

Query  91   DSDFYQKV-DGKIISPYRIFLENNTNKENIDFFENVAKKKLGNE--TSLKKDSLFILLPA  147
            ++ F     D+K ++PYR FL++N++  + ++F N+ K+   ++    +K DSL+IL+PA
Sbjct  85   GAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIPA  144

Query  148  FTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILIGGWQ  207
            FT++QL  AF+IG+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GGW+
Sbjct  145  FTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWD  204

79) G655_16715 in NC_020912


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  170 bits (628),  Expect = 7e-44, Method: Compositional matrix adjust.
 Identities = 108/198 (55%), Positives = 159/198 (81%), Gaps = 3/198 (1%)

Query  20   VPFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLR  79
            +P+I VM+TSF+K++VVFS+LRNALG+QQ+PPN+A+YG+A++LSL++M+P  +A ++  R
Sbjct  20   LPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKE--R  77

Query  80   NHDVSLSDSA-SVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDS  138
             H V +++++         ++APYR+FL+++ +E+E  +F +  ++ WP +   ++ PDS
Sbjct  78   WHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDS  137

Query  139  LLILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllf  198
            LLIL+PAFTVS+LT+AF IG+LIYLPF+AIDL+ISNILLAMGMMMVSPMTISLPFKLL+F
Sbjct  138  LLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIF  197

Query  199  vllDGWARLTHGLVISYG  216
            +L +GW      LV S++
Sbjct  198  LLAGGWDLTLAQLVQSFS  215

80) ECs4583 in NC_002695


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  170 bits (628),  Expect = 8e-44, Method: Compositional matrix adjust.
 Identities = 94/181 (52%), Positives = 145/181 (81%), Gaps = 5/181 (2%)

Query  30   IGTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIILQINDNISQEPINY  89
            +GTSFLK+++V++IL+NALGIQQVPPN+AL + +L+L++FIM+P +L +++    +P++ 
Sbjct  26   MGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKER--WHPVQV  83

Query  90   TDSDFFQKV-DEKILSPYRGFLEKNTEKDNVEFFERAAQKKLGNE--TILKKDSLFILLP  146
            +++ F     D K L+PYR FL+KN+E  + ++F    ++   ++    +K DSL+IL+P
Sbjct  84   AGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143

Query  147  AFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGW  206
            AFT++QL  AF+IG+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GGW
Sbjct  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203

Query  207  Q  207
            +
Sbjct  204  D  204

81) escR in NC_013364


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  170 bits (627),  Expect = 9e-44, Method: Compositional matrix adjust.
 Identities = 94/180 (53%), Positives = 144/180 (80%), Gaps = 5/180 (2%)

Query  31   GTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIILQINDNISQEPINYT  90
            GTSFLK+++V++IL+NALGIQQVPPN+AL + +L+L++FIM+P +L +++    +P++ +
Sbjct  27   GTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKER--WHPVQVA  84

Query  91   DSDFFQKV-DEKILSPYRGFLEKNTEKDNVEFFERAAQKKLGNE--TILKKDSLFILLPA  147
            ++ F     D K L+PYR FL+KN+E  + ++F    ++   ++    +K DSL+IL+PA
Sbjct  85   GAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIPA  144

Query  148  FTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207
            FT++QL  AF+IG+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GGW+
Sbjct  145  FTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWD  204

82) escR in NC_011601


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  170 bits (627),  Expect = 9e-44, Method: Compositional matrix adjust.
 Identities = 94/180 (53%), Positives = 144/180 (80%), Gaps = 5/180 (2%)

Query  31   GTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIILQINDNISQEPINYT  90
            GTSFLK+++V++IL+NALGIQQVPPN+AL + +L+L++FIM+P +L +++    +P++ +
Sbjct  27   GTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKER--WHPVQVA  84

Query  91   DSDFFQKV-DEKILSPYRGFLEKNTEKDNVEFFERAAQKKLGNE--TILKKDSLFILLPA  147
            ++ F     D K L+PYR FL+KN+E  + ++F    ++   ++    +K DSL+IL+PA
Sbjct  85   GAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIPA  144

Query  148  FTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207
            FT++QL  AF+IG+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GGW+
Sbjct  145  FTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWD  204

83) epaP in NC_011353


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  170 bits (627),  Expect = 9e-44, Method: Compositional matrix adjust.
 Identities = 94/180 (53%), Positives = 144/180 (80%), Gaps = 5/180 (2%)

Query  31   GTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIILQINDNISQEPINYT  90
            GTSFLK+++V++IL+NALGIQQVPPN+AL + +L+L++FIM+P +L +++    +P++ +
Sbjct  27   GTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKER--WHPVQVA  84

Query  91   DSDFFQKV-DEKILSPYRGFLEKNTEKDNVEFFERAAQKKLGNE--TILKKDSLFILLPA  147
            ++ F     D K L+PYR FL+KN+E  + ++F    ++   ++    +K DSL+IL+PA
Sbjct  85   GAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIPA  144

Query  148  FTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207
            FT++QL  AF+IG+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GGW+
Sbjct  145  FTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWD  204

84) escR in NC_002655


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  170 bits (627),  Expect = 9e-44, Method: Compositional matrix adjust.
 Identities = 94/180 (53%), Positives = 144/180 (80%), Gaps = 5/180 (2%)

Query  31   GTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIILQINDNISQEPINYT  90
            GTSFLK+++V++IL+NALGIQQVPPN+AL + +L+L++FIM+P +L +++    +P++ +
Sbjct  27   GTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKER--WHPVQVA  84

Query  91   DSDFFQKV-DEKILSPYRGFLEKNTEKDNVEFFERAAQKKLGNE--TILKKDSLFILLPA  147
            ++ F     D K L+PYR FL+KN+E  + ++F    ++   ++    +K DSL+IL+PA
Sbjct  85   GAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIPA  144

Query  148  FTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207
            FT++QL  AF+IG+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GGW+
Sbjct  145  FTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWD  204

85) escR in NC_013008


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  170 bits (627),  Expect = 9e-44, Method: Compositional matrix adjust.
 Identities = 94/180 (53%), Positives = 144/180 (80%), Gaps = 5/180 (2%)

Query  31   GTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIILQINDNISQEPINYT  90
            GTSFLK+++V++IL+NALGIQQVPPN+AL + +L+L++FIM+P +L +++    +P++ +
Sbjct  27   GTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKER--WHPVQVA  84

Query  91   DSDFFQKV-DEKILSPYRGFLEKNTEKDNVEFFERAAQKKLGNE--TILKKDSLFILLPA  147
            ++ F     D K L+PYR FL+KN+E  + ++F    ++   ++    +K DSL+IL+PA
Sbjct  85   GAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIPA  144

Query  148  FTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207
            FT++QL  AF+IG+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GGW+
Sbjct  145  FTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWD  204

86) escR in NC_013941


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  170 bits (627),  Expect = 9e-44, Method: Compositional matrix adjust.
 Identities = 94/180 (53%), Positives = 144/180 (80%), Gaps = 5/180 (2%)

Query  31   GTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIILQINDNISQEPINYT  90
            GTSFLK+++V++IL+NALGIQQVPPN+AL + +L+L++FIM+P +L +++    +P++ +
Sbjct  27   GTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKER--WHPVQVA  84

Query  91   DSDFFQKV-DEKILSPYRGFLEKNTEKDNVEFFERAAQKKLGNE--TILKKDSLFILLPA  147
            ++ F     D K L+PYR FL+KN+E  + ++F    ++   ++    +K DSL+IL+PA
Sbjct  85   GAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIPA  144

Query  148  FTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207
            FT++QL  AF+IG+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GGW+
Sbjct  145  FTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWD  204

87) ECO55CA74_21290 in NC_017656


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  170 bits (627),  Expect = 9e-44, Method: Compositional matrix adjust.
 Identities = 94/180 (53%), Positives = 144/180 (80%), Gaps = 5/180 (2%)

Query  31   GTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIILQINDNISQEPINYT  90
            GTSFLK+++V++IL+NALGIQQVPPN+AL + +L+L++FIM+P +L +++    +P++ +
Sbjct  27   GTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKER--WHPVQVA  84

Query  91   DSDFFQKV-DEKILSPYRGFLEKNTEKDNVEFFERAAQKKLGNE--TILKKDSLFILLPA  147
            ++ F     D K L+PYR FL+KN+E  + ++F    ++   ++    +K DSL+IL+PA
Sbjct  85   GAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIPA  144

Query  148  FTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207
            FT++QL  AF+IG+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GGW+
Sbjct  145  FTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWD  204

88) CDCO157_4318 in NC_017906


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  170 bits (627),  Expect = 9e-44, Method: Compositional matrix adjust.
 Identities = 94/180 (53%), Positives = 144/180 (80%), Gaps = 5/180 (2%)

Query  31   GTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIILQINDNISQEPINYT  90
            GTSFLK+++V++IL+NALGIQQVPPN+AL + +L+L++FIM+P +L +++    +P++ +
Sbjct  27   GTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKER--WHPVQVA  84

Query  91   DSDFFQKV-DEKILSPYRGFLEKNTEKDNVEFFERAAQKKLGNE--TILKKDSLFILLPA  147
            ++ F     D K L+PYR FL+KN+E  + ++F    ++   ++    +K DSL+IL+PA
Sbjct  85   GAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIPA  144

Query  148  FTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207
            FT++QL  AF+IG+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GGW+
Sbjct  145  FTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWD  204

89) escR in NC_013353


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  169 bits (626),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 94/180 (53%), Positives = 144/180 (80%), Gaps = 5/180 (2%)

Query  31   GTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIILQINDNISQEPINYT  90
            GTSFLK+++V++IL+NALGIQQVPPN+AL + +L+L++FIM+P +L +++    +P++ +
Sbjct  27   GTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKER--WHPVQVA  84

Query  91   DSDFFQKV-DEKILSPYRGFLEKNTEKENVEFFERAAQKKLGNE--TILKKDSLFILLPA  147
            ++ F     D K L+PYR FL+KN+E  + ++F    ++   ++    +K DSL+IL+PA
Sbjct  85   GAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIPA  144

Query  148  FTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207
            FT++QL  AF+IG+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GGW+
Sbjct  145  FTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWD  204

90) escR in NC_013361


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  169 bits (626),  Expect = 1e-43, Method: Compositional matrix adjust.
 Identities = 94/180 (53%), Positives = 144/180 (80%), Gaps = 5/180 (2%)

Query  31   GTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIILQINDNISQEPINYT  90
            GTSFLK+++V++IL+NALGIQQVPPN+AL + +L+L++FIM+P +L +++    +P++ +
Sbjct  27   GTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKER--WHPVQVA  84

Query  91   DSDFFQKV-DEKILSPYRGFLEKNTEKENVEFFERAAQKKLGNE--TILKKDSLFILLPA  147
            ++ F     D K L+PYR FL+KN+E  + ++F    ++   ++    +K DSL+IL+PA
Sbjct  85   GAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIPA  144

Query  148  FTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQ  207
            FT++QL  AF+IG+L+YLPF+AIDL+ISNILLA+GMMMVSP+TIS+PFK+L+F+L GGW+
Sbjct  145  FTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWD  204

91) pscR in NC_011770


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  167 bits (619),  Expect = 4e-43, Method: Compositional matrix adjust.
 Identities = 105/192 (55%), Positives = 154/192 (81%), Gaps = 3/192 (1%)

Query  26   MATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLRNHDVSL  85
            M+TSF+K++VVFS+LRNALG+QQ+PPN+A+YG+A++LSL++M+P  +A ++  R H V +
Sbjct  26   MGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKE--RWHPVQV  83

Query  86   SDSA-SVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSLLILLP  144
            ++++         ++APYR+FL+++ +E+E  +F +  ++ WP +   ++ PDSLLIL+P
Sbjct  84   AGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143

Query  145  AFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AFTVS+LT+AF IG+LIYLPF+AIDL+ISNILLAMGMMMVSPMTISLPFKLL+F+L +GW
Sbjct  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203

Query  205  ARLTHGLVISYG  216
                  LV S++
Sbjct  204  DLTLAQLVQSFS  215

92) Dvul_2984 in NC_008741


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  164 bits (607),  Expect = 3e-42, Method: Compositional matrix adjust.
 Identities = 100/203 (50%), Positives = 153/203 (76%), Gaps = 8/203 (3%)

Query  5    APLYFIAGMALLGLAPFFLMMVTSYVKIVVVTSLVRNALGVQQVPPTMVMNGLAIILSIF  64
            +PL +I+ + LL++ P++++M TS++K+ VV S++RNALG+QQVPP + + G+A++LS+F
Sbjct  6    SPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLF  65

Query  65   IMAPVASGTLDLMQNMKIGPDP---APREIIALLDKASPPLRGFLERNADDKVVTVFMST  121
            IM+P   +  +  + ++++  P   + ++      KA +P R FL++N+++K    F + 
Sbjct  66   IMGPTLLAVKERWHPVQVAGAPFWTSEWD-----SKALAPYRQFLQKNSEEKEANYFRNL  120

Query  122  AKRIWPADQHASISRDNLLILIPSFTISELTRAFQIGFLLYLPFVAIDLVISNILLAMGM  181
             KR WP D    I  D+LLILIP+FT+S+LT+AF+IG+L+YLPF+AIDL+ISNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  182  MMVSPMTISLPFKLLLFVTLDGW  204
            MMVSPMTISLPFKLL+F+  +GW
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGW  203

93) DVUA0122 in NC_005863


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  164 bits (607),  Expect = 3e-42, Method: Compositional matrix adjust.
 Identities = 100/203 (50%), Positives = 153/203 (76%), Gaps = 8/203 (3%)

Query  5    APLYFIAGMALLGLAPFFLMMVTSYVKIVVVTSLVRNALGVQQVPPTMVMNGLAIILSIF  64
            +PL +I+ + LL++ P++++M TS++K+ VV S++RNALG+QQVPP + + G+A++LS+F
Sbjct  6    SPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLF  65

Query  65   IMAPVASGTLDLMQNMKIGPDP---APREIIALLDKASPPLRGFLERNADDKVVTVFMST  121
            IM+P   +  +  + ++++  P   + ++      KA +P R FL++N+++K    F + 
Sbjct  66   IMGPTLLAVKERWHPVQVAGAPFWTSEWD-----SKALAPYRQFLQKNSEEKEANYFRNL  120

Query  122  AKRIWPADQHASISRDNLLILIPSFTISELTRAFQIGFLLYLPFVAIDLVISNILLAMGM  181
             KR WP D    I  D+LLILIP+FT+S+LT+AF+IG+L+YLPF+AIDL+ISNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  182  MMVSPMTISLPFKLLLFVTLDGW  204
            MMVSPMTISLPFKLL+F+  +GW
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGW  203

94) Deval_3224 in NC_017311


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  164 bits (607),  Expect = 3e-42, Method: Compositional matrix adjust.
 Identities = 100/203 (50%), Positives = 153/203 (76%), Gaps = 8/203 (3%)

Query  5    APLYFIAGMALLGLAPFFLMMVTSYVKIVVVTSLVRNALGVQQVPPTMVMNGLAIILSIF  64
            +PL +I+ + LL++ P++++M TS++K+ VV S++RNALG+QQVPP + + G+A++LS+F
Sbjct  6    SPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLF  65

Query  65   IMAPVASGTLDLMQNMKIGPDP---APREIIALLDKASPPLRGFLERNADDKVVTVFMST  121
            IM+P   +  +  + ++++  P   + ++      KA +P R FL++N+++K    F + 
Sbjct  66   IMGPTLLAVKERWHPVQVAGAPFWTSEWD-----SKALAPYRQFLQKNSEEKEANYFRNL  120

Query  122  AKRIWPADQHASISRDNLLILIPSFTISELTRAFQIGFLLYLPFVAIDLVISNILLAMGM  181
             KR WP D    I  D+LLILIP+FT+S+LT+AF+IG+L+YLPF+AIDL+ISNILLAMGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  182  MMVSPMTISLPFKLLLFVTLDGW  204
            MMVSPMTISLPFKLL+F+  +GW
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGW  203

95) DvMF_2439 in NC_011769


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  164 bits (606),  Expect = 4e-42, Method: Compositional matrix adjust.
 Identities = 99/202 (50%), Positives = 150/202 (75%), Gaps = 8/202 (3%)

Query  6    PLYYIAGMALLGLAPFFLMMVTSYVKIVVVTSLVRNALGVQQVPPAMVMNGLAIILSIFI  65
            PL  I+ + LL++ P++++M TS++K+ VV S++RNALG+QQVPP + + G+A++LS+FI
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  66   MAPMVESTLDILKTVRVSEQP---EPREVVELLDRASPPLRDFLSRNADDKVITAFMGTA  122
            M+P + +  +    V+V+  P     ++      +A +P R+FL +N+++K    F    
Sbjct  67   MGPTLLAVKERWHPVQVAGAPFWTSEWD-----SKALAPYRQFLQKNSEEKEANYFRNLI  121

Query  123  KRIWPKERHDTIRRENLLILVPAFTISELTKAFQIGFLLYLPFVAIDLIISNILLAMGMM  182
            KR WP +    I+ ++LLIL+PAFT+S+LT+AF+IG+L+YLPF+AIDL+ISNILLAMGMM
Sbjct  122  KRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMM  181

Query  183  MVSPMTISLPFKLLLFVTLDGW  204
            MVSPMTISLPFKLL+F+  +GW
Sbjct  182  MVSPMTISLPFKLLIFLLAGGW  203

96) ascR in NC_009350


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  163 bits (602),  Expect = 7e-42, Method: Compositional matrix adjust.
 Identities = 119/217 (55%), Positives = 167/217 (77%), Gaps = 4/217 (1%)

Query  2    IQLPDE-LNLIVGlallallPFIAVMATSFVKLAVVFSLLRNALGVQQIPPNMAMYGLAI  60
            + LPD  L+LI  L LL++LP+I VM+TSF+KLAVVFS+LRNALG+QQ+PPN+A+YG+A+
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   ILSIYVMAPVGFATQDYLRQNEVSLAKSE-SVEKFLDEGIAPYRDFLKKQIKPREHAFFI  119
            +LS+++M+P  +A ++  R + V +A +          ++APYR+FL+K+   +E  +F 
Sbjct  61   VLSLFIMGPTLLAVKE--RWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFR  118

Query  120  DSTKQLWPSKYADRLEPDSLLILLPAFTVSELSRAFEIGFLIYLPFIAIDLIISNILLAM  179
            +  K+ WP     ++ PDSLLIL+PAFTVS+L++AF IG+LIYLPF+AIDL+ISNILLAM
Sbjct  119  NLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAM  178

Query  180  GMMMVSPMTISlpfklllfvllDGWARLTHGLVISYG  216
            GMMMVSPMTISLPFKLL+F+L +GW      LV S++
Sbjct  179  GMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

97) sctR in NC_012962


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  161 bits (595),  Expect = 3e-41, Method: Compositional matrix adjust.
 Identities = 105/195 (54%), Positives = 152/195 (78%), Gaps = 7/195 (3%)

Query  25   VMATSFLKLAVVFSLLRNALGVQQIPPNMAMYGLAIILTIYVMAPVGFATQDYLRQNEVS  84
            VM+TSFLKLAVVFS+LRNALG+QQ+PPN+A+YG+A++L++++M+P  +A ++  +  +V+
Sbjct  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVA  84

Query  85   ---FSNAQSVEKFLEEGMAPYRNFLKQHIKSSERTFFIDSTRQIWPSQYANRLEPDSLLI  141
               F  ++   K    ++APYR+FL+++    E  +F +  ++ WP +   ++ PDSLLI
Sbjct  85   GAPFWTSEWDSK----ALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLI  140

Query  142  LLPAFTVSELTRAFEIGFLLYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllfvll  201
            L+PAFTVS+LT+AF IG+L+YLPF+AIDL+ISNILLAMGMMMVSPMTISLPFKLL+F+L 
Sbjct  141  LIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLA  200

Query  202  DGWTRLTHGLVISYG  216
            +GW      LV S++
Sbjct  201  GGWDLTLAQLVQSFS  215

98) sctR in NC_005126


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  160 bits (592),  Expect = 5e-41, Method: Compositional matrix adjust.
 Identities = 103/192 (54%), Positives = 150/192 (79%), Gaps = 1/192 (0%)

Query  25   VMATSFLKLAVVFSLLRNALGVQQIPPNMAMYGLAIILTIYVMAPVGFATQDYLRQNEVS  84
            VM+TSFLKLAVVFS+LRNALG+QQ+PPN+A+YG+A++L++++M+P  +A ++  +  +V+
Sbjct  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVA  84

Query  85   FSNAQSVDKFVEEGLTPYRNFLKQHIKPSERTFFIDSTRQIWPSQYADRLEPDSLLILLP  144
             + +         +L+PYR+FL+++    E  +F +  ++ WP +   ++ PDSLLIL+P
Sbjct  85   -GAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143

Query  145  AFTVSELTRAFEIGFLLYLPFIAIDLIISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AFTVS+LT+AF IG+L+YLPF+AIDL+ISNILLAMGMMMVSPMTISLPFKLL+F+L +GW
Sbjct  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203

Query  205  TRLTHGLVISYG  216
                  LV S++
Sbjct  204  DLTLAQLVQSFS  215

99) yscR in NC_007645


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  159 bits (586),  Expect = 1e-40, Method: Compositional matrix adjust.
 Identities = 108/202 (54%), Positives = 151/202 (75%), Gaps = 7/202 (3%)

Query  6    AIPLIGTLVLLSLIPFIAIMTTSFIKLAVVFSLLRNALGIQQIPPNMALYGLAIVLSIYI  65
            ++ LIG L LLS++P+I +M TSF+KLAVVFS+LRNALGIQQ+PPN+ALYG+A+VLS++I
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  66   MAPVGYQIAD---TVKEKGFDLSQSESLKELANSAIDPMSEFLTKHSSEKERGFFLESAE  122
            M+P    + +    V+  G  +  SE      + A+ P  +FL K+S EKE  +F +   
Sbjct  67   MGPTLLAVKERWHPVQVAGAPFWTSEW----DSKALAPYRQFLQKNSEEKEANYFRNLIK  122

Query  123  TLWPKEYAARLDTNSMLVLVPSFTISELKSAFEIGFLLYLPFIAIDLIVSNILLAMGMMM  182
              WP +   ++  +S+L+L+P+FT+S+L  AF IG+L+YLPF+AIDL++SNILLAMGMMM
Sbjct  123  RTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMM  182

Query  183  VSPMTISlpfklllfvllDGWT  204
            VSPMTISLPFKLL+F+L +GW 
Sbjct  183  VSPMTISLPFKLLIFLLAGGWD  204

100) NH44784_014541 in NC_021285


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  159 bits (587),  Expect = 1e-40, Method: Compositional matrix adjust.
 Identities = 93/198 (47%), Positives = 146/198 (74%), Gaps = 8/198 (4%)

Query  25   MTTSFLKIAVVLTLVRNALGVQQVPPNMALYGLALILSAYVMGPVVMQIGDELRAPPAVA  84
            M TSFLK+AVV++++RNALG+QQVPPN+ALYG+AL+LS ++MGP ++ + +  + P  VA
Sbjct  26   MGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKER-WHPVQVA  84

Query  85   APGTPEPDRLEGILEAVARGAEPMRAFMLKNSRAEQRDFFLRTARGLWGEQQARNLKEDD  144
            ++    +++        +++  P R F+ KNS   + ++F    +  W E+  R++K D 
Sbjct  85   GAPFWTSEW-------DSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDS  137

Query  145  LLVLIPSFLLSELTAAFQIGFLLYLPFVIIDLIVSNILLAMGMMMVSPVTISMPLKLFLF  204
            LL+LIP+F +S+LT AF+IG+L+YLPF+ IDL++SNILLAMGMMMVSP+TIS+P+KL++F
Sbjct  138  LLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIF  197

Query  205  VMVDGWTRLIQGLVLSYT  222
            ++ +GW   +  LV S++
Sbjct  198  LLAGGWDLTLAQLVQSFS  215

101) yscR in NC_015717


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  159 bits (586),  Expect = 2e-40, Method: Compositional matrix adjust.
 Identities = 87/199 (44%), Positives = 145/199 (73%), Gaps = 7/199 (3%)

Query  27   PFIAIMATTYVKLVVVLGLVRNALGVQNVPPNMALNGIAIILTVYIMAPVAIASYQAVRD  86
            P+I +M+T+++KL VV++++RNALG+Q+VPPN+AL G+A++L+++IM+P  +A    V++
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLA----VKE  76

Query  87   R--PVDTRNME-SLADIARDGAKPFLHFLERNTTPADRAFFVDTTHRLWPKDQADSVTDH  143
            R  PV+        ++    +  P+ +FL++N+   +  +F +   R WP D    +  +
Sbjct  77   RWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPD  136

Query  144  DILVLVPAFTTAELTKAFKAGFLLFLPFIVIDLIVSNILLAMGMMMVSPMTISLPFKLFL  203
             +L+L+PAFT ++LT+AF+ G+L++LPF+ IDL++SNILLAMGMMMVSPMTISLPFKL++
Sbjct  137  SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLI  196

Query  204  FVIVNGWQKLIQGLVLSYA  222
            F++  GW+  +  LV S++
Sbjct  197  FLLAGGWDLTLAQLVQSFS  215

102) yscR in NC_008791


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  155 bits (572),  Expect = 2e-39, Method: Compositional matrix adjust.
 Identities = 103/194 (54%), Positives = 153/194 (79%), Gaps = 1/194 (0%)

Query  23   VSVMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANE  82
            + VM+TSF+K+AVVFS+LRNALG+QQ+PPN+A+YG+A++LSL++M+P  +A ++  ++ +
Sbjct  23   IIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQ  82

Query  83   VSLTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFIL  142
            V+ + +         +LAPYR FL+++ + +E ++F +  K+ WP +   ++ +DSL+IL
Sbjct  83   VAGAPF-WTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLIL  141

Query  143  LPAFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllD  202
            +PAFTVS+LT+AF IG+LIYLPF+ IDL+ISNILLAMGMMMVSPMTISLPFKLL+F+L +
Sbjct  142  IPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAG  201

Query  203  GWTRLTHGLVISYG  216
            GW      LV S++
Sbjct  202  GWDLTLAQLVQSFS  215

103) YE105_P0026 in NC_015475


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  155 bits (572),  Expect = 2e-39, Method: Compositional matrix adjust.
 Identities = 103/194 (54%), Positives = 153/194 (79%), Gaps = 1/194 (0%)

Query  23   VSVMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANE  82
            + VM+TSF+K+AVVFS+LRNALG+QQ+PPN+A+YG+A++LSL++M+P  +A ++  ++ +
Sbjct  23   IIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQ  82

Query  83   VSLTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFIL  142
            V+ + +         +LAPYR FL+++ + +E ++F +  K+ WP +   ++ +DSL+IL
Sbjct  83   VAGAPF-WTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLIL  141

Query  143  LPAFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllD  202
            +PAFTVS+LT+AF IG+LIYLPF+ IDL+ISNILLAMGMMMVSPMTISLPFKLL+F+L +
Sbjct  142  IPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAG  201

Query  203  GWTRLTHGLVISYG  216
            GW      LV S++
Sbjct  202  GWDLTLAQLVQSFS  215

104) Y11_p0741 in NC_017565


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  155 bits (572),  Expect = 2e-39, Method: Compositional matrix adjust.
 Identities = 103/194 (54%), Positives = 153/194 (79%), Gaps = 1/194 (0%)

Query  23   VSVMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANE  82
            + VM+TSF+K+AVVFS+LRNALG+QQ+PPN+A+YG+A++LSL++M+P  +A ++  ++ +
Sbjct  23   IIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQ  82

Query  83   VSLTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFIL  142
            V+ + +         +LAPYR FL+++ + +E ++F +  K+ WP +   ++ +DSL+IL
Sbjct  83   VAGAPF-WTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLIL  141

Query  143  LPAFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllD  202
            +PAFTVS+LT+AF IG+LIYLPF+ IDL+ISNILLAMGMMMVSPMTISLPFKLL+F+L +
Sbjct  142  IPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAG  201

Query  203  GWTRLTHGLVISYG  216
            GW      LV S++
Sbjct  202  GWDLTLAQLVQSFS  215

105) yscR in NC_010157


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  155 bits (570),  Expect = 3e-39, Method: Compositional matrix adjust.
 Identities = 103/192 (54%), Positives = 152/192 (80%), Gaps = 1/192 (0%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            VM+TSF+K+AVVFS+LRNALG+QQ+PPN+A+YG+A++LSL++M+P  +A ++  ++ +V+
Sbjct  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVA  84

Query  85   LTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILLP  144
             + +         +LAPYR FL+++ + +E ++F +  K+ WP +   ++ +DSL+IL+P
Sbjct  85   GAPF-WTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143

Query  145  AFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AFTVS+LT+AF IG+LIYLPF+ IDL+ISNILLAMGMMMVSPMTISLPFKLL+F+L +GW
Sbjct  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203

Query  205  TRLTHGLVISYG  216
                  LV S++
Sbjct  204  DLTLAQLVQSFS  215

106) YPA_CD0018 in NC_008122


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  155 bits (570),  Expect = 3e-39, Method: Compositional matrix adjust.
 Identities = 103/192 (54%), Positives = 152/192 (80%), Gaps = 1/192 (0%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            VM+TSF+K+AVVFS+LRNALG+QQ+PPN+A+YG+A++LSL++M+P  +A ++  ++ +V+
Sbjct  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVA  84

Query  85   LTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILLP  144
             + +         +LAPYR FL+++ + +E ++F +  K+ WP +   ++ +DSL+IL+P
Sbjct  85   GAPF-WTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143

Query  145  AFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AFTVS+LT+AF IG+LIYLPF+ IDL+ISNILLAMGMMMVSPMTISLPFKLL+F+L +GW
Sbjct  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203

Query  205  TRLTHGLVISYG  216
                  LV S++
Sbjct  204  DLTLAQLVQSFS  215

107) yscR in NC_005813


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  155 bits (570),  Expect = 3e-39, Method: Compositional matrix adjust.
 Identities = 103/192 (54%), Positives = 152/192 (80%), Gaps = 1/192 (0%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            VM+TSF+K+AVVFS+LRNALG+QQ+PPN+A+YG+A++LSL++M+P  +A ++  ++ +V+
Sbjct  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVA  84

Query  85   LTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILLP  144
             + +         +LAPYR FL+++ + +E ++F +  K+ WP +   ++ +DSL+IL+P
Sbjct  85   GAPF-WTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143

Query  145  AFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AFTVS+LT+AF IG+LIYLPF+ IDL+ISNILLAMGMMMVSPMTISLPFKLL+F+L +GW
Sbjct  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203

Query  205  TRLTHGLVISYG  216
                  LV S++
Sbjct  204  DLTLAQLVQSFS  215

108) yscR in NC_003131


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  155 bits (570),  Expect = 3e-39, Method: Compositional matrix adjust.
 Identities = 103/192 (54%), Positives = 152/192 (80%), Gaps = 1/192 (0%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            VM+TSF+K+AVVFS+LRNALG+QQ+PPN+A+YG+A++LSL++M+P  +A ++  ++ +V+
Sbjct  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVA  84

Query  85   LTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILLP  144
             + +         +LAPYR FL+++ + +E ++F +  K+ WP +   ++ +DSL+IL+P
Sbjct  85   GAPF-WTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143

Query  145  AFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AFTVS+LT+AF IG+LIYLPF+ IDL+ISNILLAMGMMMVSPMTISLPFKLL+F+L +GW
Sbjct  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203

Query  205  TRLTHGLVISYG  216
                  LV S++
Sbjct  204  DLTLAQLVQSFS  215

109) yscR in NC_017153


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  155 bits (570),  Expect = 3e-39, Method: Compositional matrix adjust.
 Identities = 103/192 (54%), Positives = 152/192 (80%), Gaps = 1/192 (0%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            VM+TSF+K+AVVFS+LRNALG+QQ+PPN+A+YG+A++LSL++M+P  +A ++  ++ +V+
Sbjct  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVA  84

Query  85   LTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILLP  144
             + +         +LAPYR FL+++ + +E ++F +  K+ WP +   ++ +DSL+IL+P
Sbjct  85   GAPF-WTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143

Query  145  AFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AFTVS+LT+AF IG+LIYLPF+ IDL+ISNILLAMGMMMVSPMTISLPFKLL+F+L +GW
Sbjct  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203

Query  205  TRLTHGLVISYG  216
                  LV S++
Sbjct  204  DLTLAQLVQSFS  215

110) yscR in NC_017157


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  155 bits (570),  Expect = 3e-39, Method: Compositional matrix adjust.
 Identities = 103/192 (54%), Positives = 152/192 (80%), Gaps = 1/192 (0%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            VM+TSF+K+AVVFS+LRNALG+QQ+PPN+A+YG+A++LSL++M+P  +A ++  ++ +V+
Sbjct  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVA  84

Query  85   LTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILLP  144
             + +         +LAPYR FL+++ + +E ++F +  K+ WP +   ++ +DSL+IL+P
Sbjct  85   GAPF-WTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143

Query  145  AFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AFTVS+LT+AF IG+LIYLPF+ IDL+ISNILLAMGMMMVSPMTISLPFKLL+F+L +GW
Sbjct  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203

Query  205  TRLTHGLVISYG  216
                  LV S++
Sbjct  204  DLTLAQLVQSFS  215

111) YPDSF_3973 in NC_009377


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  155 bits (570),  Expect = 3e-39, Method: Compositional matrix adjust.
 Identities = 103/192 (54%), Positives = 152/192 (80%), Gaps = 1/192 (0%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            VM+TSF+K+AVVFS+LRNALG+QQ+PPN+A+YG+A++LSL++M+P  +A ++  ++ +V+
Sbjct  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVA  84

Query  85   LTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILLP  144
             + +         +LAPYR FL+++ + +E ++F +  K+ WP +   ++ +DSL+IL+P
Sbjct  85   GAPF-WTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143

Query  145  AFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AFTVS+LT+AF IG+LIYLPF+ IDL+ISNILLAMGMMMVSPMTISLPFKLL+F+L +GW
Sbjct  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203

Query  205  TRLTHGLVISYG  216
                  LV S++
Sbjct  204  DLTLAQLVQSFS  215

112) yscR in NC_014017


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  155 bits (570),  Expect = 3e-39, Method: Compositional matrix adjust.
 Identities = 103/192 (54%), Positives = 152/192 (80%), Gaps = 1/192 (0%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            VM+TSF+K+AVVFS+LRNALG+QQ+PPN+A+YG+A++LSL++M+P  +A ++  ++ +V+
Sbjct  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVA  84

Query  85   LTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILLP  144
             + +         +LAPYR FL+++ + +E ++F +  K+ WP +   ++ +DSL+IL+P
Sbjct  85   GAPF-WTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143

Query  145  AFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AFTVS+LT+AF IG+LIYLPF+ IDL+ISNILLAMGMMMVSPMTISLPFKLL+F+L +GW
Sbjct  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203

Query  205  TRLTHGLVISYG  216
                  LV S++
Sbjct  204  DLTLAQLVQSFS  215

113) pYV0071 in NC_006153


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  155 bits (570),  Expect = 3e-39, Method: Compositional matrix adjust.
 Identities = 103/192 (54%), Positives = 152/192 (80%), Gaps = 1/192 (0%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            VM+TSF+K+AVVFS+LRNALG+QQ+PPN+A+YG+A++LSL++M+P  +A ++  ++ +V+
Sbjct  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVA  84

Query  85   LTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILLP  144
             + +         +LAPYR FL+++ + +E ++F +  K+ WP +   ++ +DSL+IL+P
Sbjct  85   GAPF-WTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143

Query  145  AFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AFTVS+LT+AF IG+LIYLPF+ IDL+ISNILLAMGMMMVSPMTISLPFKLL+F+L +GW
Sbjct  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203

Query  205  TRLTHGLVISYG  216
                  LV S++
Sbjct  204  DLTLAQLVQSFS  215

114) YPTS_4289 in NC_010635


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  155 bits (570),  Expect = 3e-39, Method: Compositional matrix adjust.
 Identities = 103/192 (54%), Positives = 152/192 (80%), Gaps = 1/192 (0%)

Query  25   VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS  84
            VM+TSF+K+AVVFS+LRNALG+QQ+PPN+A+YG+A++LSL++M+P  +A ++  ++ +V+
Sbjct  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVA  84

Query  85   LTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILLP  144
             + +         +LAPYR FL+++ + +E ++F +  K+ WP +   ++ +DSL+IL+P
Sbjct  85   GAPF-WTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143

Query  145  AFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISlpfklllfvllDGW  204
            AFTVS+LT+AF IG+LIYLPF+ IDL+ISNILLAMGMMMVSPMTISLPFKLL+F+L +GW
Sbjct  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203

Query  205  TRLTHGLVISYG  216
                  LV S++
Sbjct  204  DLTLAQLVQSFS  215

115) sctR in NC_020127


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  152 bits (561),  Expect = 1e-38, Method: Compositional matrix adjust.
 Identities = 93/188 (50%), Positives = 140/188 (75%), Gaps = 8/188 (4%)

Query  20   PFVIMMVTSYVKIVVVTSLIRNALGVQQVPPAIVMNGLAIILSIFIMAPVYMKMEDLYLK  79
            P++I+M TS++K+ VV S++RNALG+QQVPP I + G+A++LS+FIM+P  + + +    
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP  80

Query  80   TALPSSP---AALEVIKALYDATPPLREFLIRNADESTIRGLMVTAKRIWPKDQHETISR  136
              ++++P   +  +  KAL    +P R+FL +N++E     +    KR WP D    I  
Sbjct  81   VQVAGAPFWTSEWDS-KAL----APYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKP  135

Query  137  NNLLIIIPAFTITELTKSFQIGFLLYLPFVAIDLVVSNILLAMGMMMVSPMTISLPFKLL  196
            ++LLI+IPAFT+++LT++F+IG+L+YLPF+AIDL++SNILLAMGMMMVSPMTISLPFKLL
Sbjct  136  DSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLL  195

Query  197  LFVTLDGW  204
            +F+  +GW
Sbjct  196  IFLLAGGW  203

116) SctR in NC_008011


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  152 bits (561),  Expect = 1e-38, Method: Compositional matrix adjust.
 Identities = 93/188 (50%), Positives = 140/188 (75%), Gaps = 8/188 (4%)

Query  20   PFVIMMVTSYVKIVVVTSLIRNALGVQQVPPAIVMNGLAIILSIFIMAPVYMKMEDLYLK  79
            P++I+M TS++K+ VV S++RNALG+QQVPP I + G+A++LS+FIM+P  + + +    
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP  80

Query  80   TALPSSP---AALEVIKALYDATPPLREFLIRNADESTIRGLMVTAKRIWPKDQHETISR  136
              ++++P   +  +  KAL    +P R+FL +N++E     +    KR WP D    I  
Sbjct  81   VQVAGAPFWTSEWDS-KAL----APYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKP  135

Query  137  NNLLIIIPAFTITELTKSFQIGFLLYLPFVAIDLVVSNILLAMGMMMVSPMTISLPFKLL  196
            ++LLI+IPAFT+++LT++F+IG+L+YLPF+AIDL++SNILLAMGMMMVSPMTISLPFKLL
Sbjct  136  DSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLL  195

Query  197  LFVTLDGW  204
            +F+  +GW
Sbjct  196  IFLLAGGW  203

117) N646_0740 in NC_022349


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  152 bits (560),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 106/197 (54%), Positives = 152/197 (78%), Gaps = 3/197 (1%)

Query  21   PFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFETYDYVKQ  80
            P+I +M+TSF+KLAVVFS+LRNALG+QQ+PPN+ALYG+A++LS+FIM+P  +   +  + 
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKE--RW  78

Query  81   HDISLEDSA-SVEGLIESGLQPYREFLKKHIRETEAIFFTDAARTLWPQKYVDRLESDSl  139
            H + + +++         +L PYR+FL+K+  E EA +F +  +  WP+    ++ +DSL
Sbjct  79   HPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSL  138

Query  140  llllPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISlpfklllfv  199
            L+L+PAFTVS+LT+AF IG+L+YLPF+AIDL++SNILLAMGMMMVSPMTISLPFKLL+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  200  llDGWTKLTHGLVLSYG  216
            L +GW      LV S++
Sbjct  199  LAGGWDLTLAQLVQSFS  215

118) VEA_003362 in NC_013456


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  152 bits (560),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 106/197 (54%), Positives = 152/197 (78%), Gaps = 3/197 (1%)

Query  21   PFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFETYDYVKQ  80
            P+I +M+TSF+KLAVVFS+LRNALG+QQ+PPN+ALYG+A++LS+FIM+P  +   +  + 
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKE--RW  78

Query  81   HDISLEDSA-SVEGLIESGLQPYREFLKKHIRETEAIFFTDAARTLWPQKYVDRLESDSl  139
            H + + +++         +L PYR+FL+K+  E EA +F +  +  WP+    ++ +DSL
Sbjct  79   HPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSL  138

Query  140  llllPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISlpfklllfv  199
            L+L+PAFTVS+LT+AF IG+L+YLPF+AIDL++SNILLAMGMMMVSPMTISLPFKLL+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  200  llDGWTKLTHGLVLSYG  216
            L +GW      LV S++
Sbjct  199  LAGGWDLTLAQLVQSFS  215

119) VPBB_1532 in NC_019955


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  152 bits (560),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 106/197 (54%), Positives = 152/197 (78%), Gaps = 3/197 (1%)

Query  21   PFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFETYDYVKQ  80
            P+I +M+TSF+KLAVVFS+LRNALG+QQ+PPN+ALYG+A++LS+FIM+P  +   +  + 
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKE--RW  78

Query  81   HDISLEDSA-SVEGLIESGLQPYREFLKKHIRETEAIFFTDAARTLWPQKYVDRLESDSl  139
            H + + +++         +L PYR+FL+K+  E EA +F +  +  WP+    ++ +DSL
Sbjct  79   HPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSL  138

Query  140  llllPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISlpfklllfv  199
            L+L+PAFTVS+LT+AF IG+L+YLPF+AIDL++SNILLAMGMMMVSPMTISLPFKLL+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  200  llDGWTKLTHGLVLSYG  216
            L +GW      LV S++
Sbjct  199  LAGGWDLTLAQLVQSFS  215

120) ssaR in NC_021848


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  152 bits (560),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 106/197 (54%), Positives = 152/197 (78%), Gaps = 3/197 (1%)

Query  21   PFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFETYDYVKQ  80
            P+I +M+TSF+KLAVVFS+LRNALG+QQ+PPN+ALYG+A++LS+FIM+P  +   +  + 
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKE--RW  78

Query  81   HDISLEDSA-SVEGLIESGLQPYREFLKKHIRETEAIFFTDAARTLWPQKYVDRLESDSl  139
            H + + +++         +L PYR+FL+K+  E EA +F +  +  WP+    ++ +DSL
Sbjct  79   HPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSL  138

Query  140  llllPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISlpfklllfv  199
            L+L+PAFTVS+LT+AF IG+L+YLPF+AIDL++SNILLAMGMMMVSPMTISLPFKLL+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  200  llDGWTKLTHGLVLSYG  216
            L +GW      LV S++
Sbjct  199  LAGGWDLTLAQLVQSFS  215

121) ssaR in NC_021847


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  152 bits (560),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 106/197 (54%), Positives = 152/197 (78%), Gaps = 3/197 (1%)

Query  21   PFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFETYDYVKQ  80
            P+I +M+TSF+KLAVVFS+LRNALG+QQ+PPN+ALYG+A++LS+FIM+P  +   +  + 
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKE--RW  78

Query  81   HDISLEDSA-SVEGLIESGLQPYREFLKKHIRETEAIFFTDAARTLWPQKYVDRLESDSl  139
            H + + +++         +L PYR+FL+K+  E EA +F +  +  WP+    ++ +DSL
Sbjct  79   HPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSL  138

Query  140  llllPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISlpfklllfv  199
            L+L+PAFTVS+LT+AF IG+L+YLPF+AIDL++SNILLAMGMMMVSPMTISLPFKLL+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  200  llDGWTKLTHGLVLSYG  216
            L +GW      LV S++
Sbjct  199  LAGGWDLTLAQLVQSFS  215

122) VP1672 in NC_004603


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  152 bits (560),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 106/197 (54%), Positives = 152/197 (78%), Gaps = 3/197 (1%)

Query  21   PFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFETYDYVKQ  80
            P+I +M+TSF+KLAVVFS+LRNALG+QQ+PPN+ALYG+A++LS+FIM+P  +   +  + 
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKE--RW  78

Query  81   HDISLEDSA-SVEGLIESGLQPYREFLKKHIRETEAIFFTDAARTLWPQKYVDRLESDSl  139
            H + + +++         +L PYR+FL+K+  E EA +F +  +  WP+    ++ +DSL
Sbjct  79   HPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSL  138

Query  140  llllPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISlpfklllfv  199
            L+L+PAFTVS+LT+AF IG+L+YLPF+AIDL++SNILLAMGMMMVSPMTISLPFKLL+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  200  llDGWTKLTHGLVLSYG  216
            L +GW      LV S++
Sbjct  199  LAGGWDLTLAQLVQSFS  215

123) bscR in NC_018829


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  152 bits (561),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 88/198 (45%), Positives = 142/198 (72%), Gaps = 9/198 (4%)

Query  25   MTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHRIGTEVQALTAQA  84
            M TSFLK+AVV++++RNALG+QQVPPN+ALYG+AL+LS ++M+P +  +    +++   +
Sbjct  26   MGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAG  85

Query  85   GESGTAAPMALDAVLGVAERGVGPLRAFMLRNSQPAQRDFFLRTARHLWGEEASRDLSED  144
            +   T+             ++++P R F+ +NS+  + ++F    ++ W E+  R +  D
Sbjct  86   APFWTSEW---------DSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPD  136

Query  145  NLLVLTPAFLVSELTAAFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVTISMPLKLFL  204
            +LL+L PAF VS+LT AF++G+L+YLPF+ IDL++SNILLAMGMMMVSP+TIS+P+KL++
Sbjct  137  SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLI  196

Query  205  FVMVDGWTRLIQGLVLSY  222
            F++ +GW   +  LV S+
Sbjct  197  FLLAGGWDLTLAQLVQSF  214

124) bscR in NC_018518


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  152 bits (561),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 88/198 (45%), Positives = 142/198 (72%), Gaps = 9/198 (4%)

Query  25   MTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHRIGTEVQALTAQA  84
            M TSFLK+AVV++++RNALG+QQVPPN+ALYG+AL+LS ++M+P +  +    +++   +
Sbjct  26   MGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAG  85

Query  85   GESGTAAPMALDAVLGVAERGVGPLRAFMLRNSQPAQRDFFLRTARHLWGEEASRDLSED  144
            +   T+             ++++P R F+ +NS+  + ++F    ++ W E+  R +  D
Sbjct  86   APFWTSEW---------DSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPD  136

Query  145  NLLVLTPAFLVSELTAAFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVTISMPLKLFL  204
            +LL+L PAF VS+LT AF++G+L+YLPF+ IDL++SNILLAMGMMMVSP+TIS+P+KL++
Sbjct  137  SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLI  196

Query  205  FVMVDGWTRLIQGLVLSY  222
            F++ +GW   +  LV S+
Sbjct  197  FLLAGGWDLTLAQLVQSF  214

125) bscR in NC_017223


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  152 bits (561),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 88/198 (45%), Positives = 142/198 (72%), Gaps = 9/198 (4%)

Query  25   MTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHRIGTEVQALTAQA  84
            M TSFLK+AVV++++RNALG+QQVPPN+ALYG+AL+LS ++M+P +  +    +++   +
Sbjct  26   MGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAG  85

Query  85   GESGTAAPMALDAVLGVAERGVGPLRAFMLRNSQPAQRDFFLRTARHLWGEEASRDLSED  144
            +   T+             ++++P R F+ +NS+  + ++F    ++ W E+  R +  D
Sbjct  86   APFWTSEW---------DSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPD  136

Query  145  NLLVLTPAFLVSELTAAFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVTISMPLKLFL  204
            +LL+L PAF VS+LT AF++G+L+YLPF+ IDL++SNILLAMGMMMVSP+TIS+P+KL++
Sbjct  137  SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLI  196

Query  205  FVMVDGWTRLIQGLVLSY  222
            F++ +GW   +  LV S+
Sbjct  197  FLLAGGWDLTLAQLVQSF  214

126) bscR in NC_002929


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  152 bits (561),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 88/198 (45%), Positives = 142/198 (72%), Gaps = 9/198 (4%)

Query  25   MTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHRIGTEVQALTAQA  84
            M TSFLK+AVV++++RNALG+QQVPPN+ALYG+AL+LS ++M+P +  +    +++   +
Sbjct  26   MGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAG  85

Query  85   GESGTAAPMALDAVLGVAERGVGPLRAFMLRNSQPAQRDFFLRTARHLWGEEASRDLSED  144
            +   T+             ++++P R F+ +NS+  + ++F    ++ W E+  R +  D
Sbjct  86   APFWTSEW---------DSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPD  136

Query  145  NLLVLTPAFLVSELTAAFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVTISMPLKLFL  204
            +LL+L PAF VS+LT AF++G+L+YLPF+ IDL++SNILLAMGMMMVSP+TIS+P+KL++
Sbjct  137  SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLI  196

Query  205  FVMVDGWTRLIQGLVLSY  222
            F++ +GW   +  LV S+
Sbjct  197  FLLAGGWDLTLAQLVQSF  214

127) bscR in NC_019382


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  151 bits (558),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 90/198 (46%), Positives = 144/198 (73%), Gaps = 9/198 (4%)

Query  25   MTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHRIGTEVQALTAQA  84
            M TSFLK+AVV++++RNALG+QQVPPN+ALYG+AL+LS ++M+P +  +    +++   +
Sbjct  26   MGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAG  85

Query  85   GESGTAAPMALDAVLGVVERGVAPLRAFMLRNSQPAQRDFFLRTARHLWGEEASRDLSED  144
            +   T+     D+      +++AP R F+ +NS+  + ++F    ++ W E+  R +  D
Sbjct  86   APFWTSE---WDS------KALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPD  136

Query  145  NLLVLTPAFLVSELTAAFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVTISMPLKLFL  204
            +LL+L PAF VS+LT AF++G+L+YLPF+ IDL++SNILLAMGMMMVSP+TIS+P+KL++
Sbjct  137  SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLI  196

Query  205  FVMVDGWTRLIQGLVLSY  222
            F++ +GW   +  LV S+
Sbjct  197  FLLAGGWDLTLAQLVQSF  214

128) bscR in NC_002927


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  151 bits (558),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 90/198 (46%), Positives = 144/198 (73%), Gaps = 9/198 (4%)

Query  25   MTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHRIGTEVQALTAQA  84
            M TSFLK+AVV++++RNALG+QQVPPN+ALYG+AL+LS ++M+P +  +    +++   +
Sbjct  26   MGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAG  85

Query  85   GESGTAAPMALDAVLGVVERGVAPLRAFMLRNSQPAQRDFFLRTARHLWGEEASRDLSED  144
            +   T+     D+      +++AP R F+ +NS+  + ++F    ++ W E+  R +  D
Sbjct  86   APFWTSE---WDS------KALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPD  136

Query  145  NLLVLTPAFLVSELTAAFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVTISMPLKLFL  204
            +LL+L PAF VS+LT AF++G+L+YLPF+ IDL++SNILLAMGMMMVSP+TIS+P+KL++
Sbjct  137  SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLI  196

Query  205  FVMVDGWTRLIQGLVLSY  222
            F++ +GW   +  LV S+
Sbjct  197  FLLAGGWDLTLAQLVQSF  214

129) bscR in NC_002928


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  151 bits (558),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 90/198 (46%), Positives = 144/198 (73%), Gaps = 9/198 (4%)

Query  25   MTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHRIGTEVQALTAQA  84
            M TSFLK+AVV++++RNALG+QQVPPN+ALYG+AL+LS ++M+P +  +    +++   +
Sbjct  26   MGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAG  85

Query  85   GESGTAAPMALDAVLGVVERGVAPLRAFMLRNSQPAQRDFFLRTARHLWGEEASRDLSED  144
            +   T+     D+      +++AP R F+ +NS+  + ++F    ++ W E+  R +  D
Sbjct  86   APFWTSE---WDS------KALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPD  136

Query  145  NLLVLTPAFLVSELTAAFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVTISMPLKLFL  204
            +LL+L PAF VS+LT AF++G+L+YLPF+ IDL++SNILLAMGMMMVSP+TIS+P+KL++
Sbjct  137  SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLI  196

Query  205  FVMVDGWTRLIQGLVLSY  222
            F++ +GW   +  LV S+
Sbjct  197  FLLAGGWDLTLAQLVQSF  214

130) bscR in NC_018828


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  151 bits (558),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 90/198 (46%), Positives = 144/198 (73%), Gaps = 9/198 (4%)

Query  25   MTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHRIGTEVQALTAQA  84
            M TSFLK+AVV++++RNALG+QQVPPN+ALYG+AL+LS ++M+P +  +    +++   +
Sbjct  26   MGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAG  85

Query  85   GESGTAAPMALDAVLGVVERGVAPLRAFMLRNSQPAQRDFFLRTARHLWGEEASRDLSED  144
            +   T+     D+      +++AP R F+ +NS+  + ++F    ++ W E+  R +  D
Sbjct  86   APFWTSE---WDS------KALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPD  136

Query  145  NLLVLTPAFLVSELTAAFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVTISMPLKLFL  204
            +LL+L PAF VS+LT AF++G+L+YLPF+ IDL++SNILLAMGMMMVSP+TIS+P+KL++
Sbjct  137  SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLI  196

Query  205  FVMVDGWTRLIQGLVLSY  222
            F++ +GW   +  LV S+
Sbjct  197  FLLAGGWDLTLAQLVQSF  214

131) VAPA_2c06210 in NC_022234


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  150 bits (554),  Expect = 5e-38, Method: Compositional matrix adjust.
 Identities = 88/218 (41%), Positives = 155/218 (72%), Gaps = 8/218 (3%)

Query  4    GLPE-PLTLVALIVAFGIAPFVALMVTSYTKLVIVFGLLRTALGLQQTPPNMVLNGIAII  62
            +LP+ PL L++++  ++I P++ +M TS+ KL +VF++LR ALG+QQ PPN+ L G+A++
Sbjct  2    SLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALV  61

Query  63   LSVYIMAPVGMDIGDALRGRSFGAKGEGLGDIMAVIDAAKA--PVKEFLQKHTHERERQF  120
            LS++IM+P  + +    + R    +  G + + +    +KA  P ++FLQK+++E+E ++
Sbjct  62   LSLFIMGPTLLAV----KERWHPVQVAG-APFWTSEWDSKALAPYRQFLQKNSEEKEANY  116

Query  121  FLKSAANIWPKARAEQLKDDDFMVLVPSFTLSELTRAFQIGFIIYLVFVVVDLIVATVLL  180
            F +     WP     ++K D +++L+P+FT+S+LT+AF+IG++IYL F+ +DL+++ +LL
Sbjct  117  FRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILL  176

Query  181  ALGMSMISPTTISLPFKLLLFVMLDGWTRLVHGLVLSY  218
            A+GM M+SP TISLPFKLL+F++ +GW   +  LV S+
Sbjct  177  AMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

132) hrcR in NC_014323


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  150 bits (552),  Expect = 7e-38, Method: Compositional matrix adjust.
 Identities = 89/192 (47%), Positives = 133/192 (70%), Gaps = 4/192 (2%)

Query  28   TTSFLKISLVLLVLRNAIGVQQVPPTLAIYGIALALSVFIMAPTVQEVGKRAMAVDVSHP  87
             TSFLK+++V+ +LRNA+G+QQVPP +A+YG+AL LS+FIM+PT+  V  R  +V+V+ +
Sbjct  27   GTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGA  86

Query  88   AASRTVPILERAQDAFDPLRKFMLKMSHAEQREMFLASAKKLWPKEAAKDAQPTDALILI  147
            +   +    E+   A+ P R+F+ K S+  + + F    K+ WP +  +  +P   LILI
Sbjct  87   PFWTS----EWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILI  142

Query  148  PAFVVSELQTGYEIGFLIYIPFVVIDLLISNLLMALGMQQVSPQTITIPLKLLLFTLVGG  207
            PAF VS+L  ++ IG+LIY+PF+ IDLLISN+L+A+GM  VSP TI++P+KLL+F L GG
Sbjct  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202

Query  208  WAKLLNALAMSY  219
            W   L  L  S+
Sbjct  203  WDLTLAQLVQSF  214

133) M892_04535 in NC_022269


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  150 bits (551),  Expect = 8e-38, Method: Compositional matrix adjust.
 Identities = 105/197 (54%), Positives = 150/197 (77%), Gaps = 3/197 (1%)

Query  21   PFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFETYDYVTQ  80
            P+I +M+TSF+KLAVVFS+LRNALG+QQ+PPN+ALYG+A++LS+FIM+P  +   +    
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKE--RW  78

Query  81   HEISLEDSE-SIEGLIESGLQPYREFLKKHIRETESVFFTDAARTLWPQKYVDRLESDSl  139
            H + + ++          +L PYR+FL+K+  E E+ +F +  +  WP+    ++ +DSL
Sbjct  79   HPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSL  138

Query  140  llllPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISlpfklllfv  199
            L+L+PAFTVS+LT+AF IG+L+YLPF+AIDL++SNILLAMGMMMVSPMTISLPFKLL+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  200  llDGWTKLTHGLVLSYG  216
            L +GW      LV S++
Sbjct  199  LAGGWDLTLAQLVQSFS  215

134) VIBHAR_01726 in NC_009783


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  150 bits (551),  Expect = 8e-38, Method: Compositional matrix adjust.
 Identities = 105/197 (54%), Positives = 150/197 (77%), Gaps = 3/197 (1%)

Query  21   PFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFETYDYVTQ  80
            P+I +M+TSF+KLAVVFS+LRNALG+QQ+PPN+ALYG+A++LS+FIM+P  +   +    
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKE--RW  78

Query  81   HEISLEDSE-SIEGLIESGLQPYREFLKKHIRETESVFFTDAARTLWPQKYVDRLESDSl  139
            H + + ++          +L PYR+FL+K+  E E+ +F +  +  WP+    ++ +DSL
Sbjct  79   HPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSL  138

Query  140  llllPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISlpfklllfv  199
            L+L+PAFTVS+LT+AF IG+L+YLPF+AIDL++SNILLAMGMMMVSPMTISLPFKLL+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  200  llDGWTKLTHGLVLSYG  216
            L +GW      LV S++
Sbjct  199  LAGGWDLTLAQLVQSFS  215

135) Acav_0515 in NC_015138


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  150 bits (551),  Expect = 9e-38, Method: Compositional matrix adjust.
 Identities = 77/190 (41%), Positives = 137/190 (73%), Gaps = 3/190 (1%)

Query  30   TSYTKVVVVLGLLRNALGVQQVPPNMVLNGIAIIISVYVMAPVAMEASDRMQMLPPSAQS  89
            TS+ K+ VV+++LRNALG+QQVPPN+ L G+A+++S+++M+P  +   +R + +  ++ +
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  90   SNTQQMLAAASAAREPFRKFLDKHADAAEKAFFLKSAQALWPEDRARSLQADDLVVLAPA  149
              T +     S A  P+R+FL+K+++  E  +F +  +  WPED  R +++D L++L PA
Sbjct  88   FWTSEW---DSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIPA  144

Query  150  FLLTELTAAFRIGFLLYLAFIIVELVIANVLLAMGLSQVSPTNVAIPFKLLLFVVLDGWS  209
            F +++LT AFRIG+L+YL+F+ ++L+I+N+LLAMG+  VSP  +++PFKLL+F++ +GW 
Sbjct  145  FTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWD  204

Query  210  QVMHGLVMTY  219
              +  LV ++
Sbjct  205  LTLAQLVQSF  214

136) rhcR in NC_012586


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  149 bits (547),  Expect = 2e-37, Method: Compositional matrix adjust.
 Identities = 88/217 (41%), Positives = 151/217 (70%), Gaps = 4/217 (1%)

Query  1    MGETTTNLIPIIIIVSTIGLIPLAVVTMTGFLKISIVLFLIRNALGIQQSPPNLVLYGVA  60
            + ++  +LI I++++S   ++PL +V  T+FLK+++V+ ++RNALGIQQ PPN+ LYG A
Sbjct  3    LPDSPLQLIGILFLLS---ILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFA  59

Query  61   LILTVYVTTPLVGEMYRTLSSEQVDMQSMDSMVRAANQLRAPLQAHLTRYTDENERQFFL  120
            L+L++++  P +  +     + QV   +  +  + ++ L AP +  L + ++E+E ++F 
Sbjct  60   LVLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKAL-APYRQFLQKNSEEKEANYFR  118

Query  121  QATERIWSEEARASVKTDSLLILVPAFVSSELTRAFEIGFLLYLPFLVIDLIVSTVLMAM  180
            +   R W+E+ +  +K DSLLIL+PAF  S+LT+AF IG+L+YLPFL IDL++S +L+AM
Sbjct  119  NLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAM  178

Query  181  GMMMVSPTLISIPLKIFLFVAVNGWSRLMHGLILSYG  217
            GMMMVSP  IS+P+K+++F+   GW   +  L+ S++
Sbjct  179  GMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

137) USDA257_c21640 in NC_018000


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  149 bits (548),  Expect = 2e-37, Method: Compositional matrix adjust.
 Identities = 88/217 (41%), Positives = 150/217 (70%), Gaps = 4/217 (1%)

Query  1    MGETTTNLIPIIIIVSTIGLIPLAVVTMTGFLKISIVLFLIRNALGIQQSPPNLVLYGVA  60
            + ++  +LI I++++S   ++PL +V  T+FLK+++V+ ++RNALGIQQ PPN+ LYG A
Sbjct  3    LPDSPLQLIGILFLLS---ILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFA  59

Query  61   LILTVYVTTPLVGEMYRTLSSEQVDVQSMDSMVRAADQLRAPLQAHLTRYTDENERQFFL  120
            L+L++++  P +  +     + QV   +  +  + +  L AP +  L + ++E+E ++F 
Sbjct  60   LVLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKAL-APYRQFLQKNSEEKEANYFR  118

Query  121  QATERIWSEEARASVKTDSLLILVPAFVSSELTRAFEIGFLLYLPFLVIDLIVSTVLMAM  180
            +   R W+E+ +  +K DSLLIL+PAF  S+LT+AF IG+L+YLPFL IDL++S +L+AM
Sbjct  119  NLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAM  178

Query  181  GMMMVSPTLISIPLKIFLFVAVNGWSRLMHGLILSYG  217
            GMMMVSP  IS+P+K+++F+   GW   +  L+ S++
Sbjct  179  GMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

138) SFHH103_04957 in NC_016815


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  148 bits (545),  Expect = 2e-37, Method: Compositional matrix adjust.
 Identities = 88/217 (41%), Positives = 151/217 (70%), Gaps = 4/217 (1%)

Query  1    MGETTTNLIPIIIIVSTIGLIPLAVVTMTGFLKISIVLFLIRNALGIQQSPPNLVLYGVA  60
            + ++  +LI I++++S   ++PL +V  T+FLK+++V+ ++RNALGIQQ PPN+ LYG A
Sbjct  3    LPDSPLQLIGILFLLS---ILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFA  59

Query  61   LILTVYVTTPLVGEMYRTLSSEQVDMQSMDSMMRAANQLRAPLQAHLTRYTDENERQFFL  120
            L+L++++  P +  +     + QV   +  +  + ++ L AP +  L + ++E+E ++F 
Sbjct  60   LVLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKAL-APYRQFLQKNSEEKEANYFR  118

Query  121  QATERIWSEEARASVKTDSLLILVPAFVSSELTRAFEIGFLLYLPFLVIDLIVSTVLMAM  180
            +   R W+E+ +  +K DSLLIL+PAF  S+LT+AF IG+L+YLPFL IDL++S +L+AM
Sbjct  119  NLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAM  178

Query  181  GMMMVSPTLISIPLKIFLFVAVNGWSRLMHGLILSYG  217
            GMMMVSP  IS+P+K+++F+   GW   +  L+ S++
Sbjct  179  GMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

139) sctR in NC_014718


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  147 bits (542),  Expect = 4e-37, Method: Compositional matrix adjust.
 Identities = 82/203 (41%), Positives = 143/203 (71%), Gaps = 1/203 (0%)

Query  27   IVLAISVVPLVAVVITSYTKIVVVLSLLRNALGAQQVPPNMVLNGIAILVSLYIMAPIGM  86
            I++ +S++PL+ V+ TS+ K+ VV+S+LRNALG QQVPPN+ L G+A+++SL+IM+P  +
Sbjct  13   ILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLL  72

Query  87   AAAKQLENQPNAGTPSQSVVQAFSAAQEPFRAFLKQHANKREKRFFMRTATVIWPKEVAD  146
            A   + +    AG+P  +     S A  P+R FL+++++ +E  +F       WP ++  
Sbjct  73   AVKERWHPVQVAGAPFWTSEWD-SKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKR  131

Query  147  GLREDDFIVLAPAFTLSELTDAFKIGFLLYITFVVIDLIIANVLLAMGLNQVMPTNVAIP  206
             ++ D +++L PAFT+S+LT+AF+IG+L+Y+ F+ IDL+I+N+LLAMG+  V P  +++P
Sbjct  132  KIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLP  191

Query  207  FKLLLFVVMDGWSTLIHGLILTY  229
            FKLL+F++ +GW   +  L+ ++
Sbjct  192  FKLLIFLLAGGWDLTLAQLVQSF  214

140) hrcR in NC_013971


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  147 bits (541),  Expect = 5e-37, Method: Compositional matrix adjust.
 Identities = 81/194 (42%), Positives = 142/194 (74%), Gaps = 3/194 (1%)

Query  13   LFLGALSLIPMLMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVF  72
            LFL  LS++P+++++ T FLK+++V+ I RNA+G+QQVPPN+ALYG+AL  +LF+M+P +
Sbjct  14   LFL--LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTL  71

Query  73   NQMQQQFSQVPADLSSMDNLKTSVTNGVAPLQKFMTHNTDPDILIHLQENSVRMWPKEMS  132
              ++++   V    ++        ++++AP ++F+  N++      +++   R WP ++ 
Sbjct  72   LAVKERWHPVQVAGAPFWT-SEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIK  130

Query  133  DSVNKDNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSL  192
              ++ D+LL++IPAF +S+L  +F+IG+LIY+PF+ IDL++SN+LLA+GM MV+PMT+SL
Sbjct  131  RKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISL  190

Query  193  PLKMLLFVLINGWT  206
            P+K+L+F+L  GW 
Sbjct  191  PFKLLIFLLAGGWD  204

141) hcrR in NC_013961


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  147 bits (541),  Expect = 5e-37, Method: Compositional matrix adjust.
 Identities = 81/194 (42%), Positives = 142/194 (74%), Gaps = 3/194 (1%)

Query  13   LFLGALSLIPMLMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVF  72
            LFL  LS++P+++++ T FLK+++V+ I RNA+G+QQVPPN+ALYG+AL  +LF+M+P +
Sbjct  14   LFL--LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTL  71

Query  73   NQMQQQFSQVPADLSSMDNLKTSVTNGVAPLQKFMTHNTDPDILIHLQENSVRMWPKEMS  132
              ++++   V    ++        ++++AP ++F+  N++      +++   R WP ++ 
Sbjct  72   LAVKERWHPVQVAGAPFWT-SEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIK  130

Query  133  DSVNKDNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSL  192
              ++ D+LL++IPAF +S+L  +F+IG+LIY+PF+ IDL++SN+LLA+GM MV+PMT+SL
Sbjct  131  RKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISL  190

Query  193  PLKMLLFVLINGWT  206
            P+K+L+F+L  GW 
Sbjct  191  PFKLLIFLLAGGWD  204

142) C770_GR4pC1264 in NC_019848


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  147 bits (541),  Expect = 5e-37, Method: Compositional matrix adjust.
 Identities = 82/200 (41%), Positives = 141/200 (71%), Gaps = 1/200 (0%)

Query  17   IGLIPLAVVTMTGFLKISIVLFLIRNALGIQQSPPNLVLYGVALILTVYVTTPLVGEMYR  76
            ++++PL +V  T+FLK+++V+ ++RNALGIQQ PPN+ LYG AL+L++++  P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKE  76

Query  77   TLSSEPVDVQSIDSMMRAADSLRVPLQTHLKRYTDENERQFFMQATERIWSEEARAEVKT  136
               +  V   ++ +  + + +L  P +  L++ ++E+E ++F +   R W+E+ +  +K 
Sbjct  77   RWHPVQVAGAPFWTSEWDSKAL-APYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKP  135

Query  137  DSLLILVPAFVSSELTRAFEIGFLLYLPFLVIDLIVSTVLMAMGMMMVSPTLISIPLKIF  196
            DSLLIL+PAF  S+LT+AF IG+L+YLPFL IDL++S +L+AMGMMMVSP  IS+P+K++
Sbjct  136  DSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLL  195

Query  197  LFVAVNGWSRLMHGLILSYG  216
            +F+   GW   +  L+ S++
Sbjct  196  IFLLAGGWDLTLAQLVQSFS  215

143) D781_3938 in NC_020064


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  146 bits (536),  Expect = 1e-36, Method: Compositional matrix adjust.
 Identities = 81/197 (42%), Positives = 144/197 (74%), Gaps = 9/197 (4%)

Query  13   LFLGALSLVPMLMIVCTCFLKISMVLLLTRNAMGVQQVPPNMALYGIALAATLFVMAPVF  72
            LFL  LS++P+++++ T FLK+++V+ + RNA+G+QQVPPN+ALYG+AL  +LF+M+P +
Sbjct  14   LFL--LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTL  71

Query  73   NDMSQRLKAMPLD---FSNMERLEYTFGNGAEPLKAFMTRNTDPDILTHLQENGARMWPK  129
              + +R  ++ +    F   E+     +++  P + F+ +N++      +++   R WP 
Sbjct  72   LAVKERWHPVQVAGAPFWTSEWD----SKALAPYRQFLQKNSEEKEANYFRNLIKRTWPE  127

Query  130  EMAQSLTPQSPLLVIPAFVLSELQNGFKIGFLIFIPFLVMDLIVSNVLLALGMQMVSPMT  189
            ++ + + P+S L++IPAF +S+L ++F+IG+LI++PFL +DL++SN+LLA+GM MVSPMT
Sbjct  128  DIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMT  187

Query  190  VSLPLKILLFVLVSGWT  206
            +SLP+K+L+F+L +GW 
Sbjct  188  ISLPFKLLIFLLAGGWD  204

144) hrcR in NC_017445


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  146 bits (539),  Expect = 7e-37, Method: Compositional matrix adjust.
 Identities = 82/194 (43%), Positives = 141/194 (73%), Gaps = 3/194 (1%)

Query  13   LFLGALSLIPMLMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVF  72
            LFL  LS++P+++++ T FLK+++V+ I RNA+G+QQVPPN+ALYG+AL  +LF+M+P +
Sbjct  14   LFL--LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTL  71

Query  73   NQMQQQFSQVPADLSSMDNLKTSVSNGVAPLQKFMTHNTDPDILIHLQENSVRMWPKEMS  132
              ++++   V    ++        S+++AP ++F+  N++      +++   R WP ++ 
Sbjct  72   LAVKERWHPVQVAGAPFWT-SEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIK  130

Query  133  DSVSKDNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSL  192
              +  D+LL++IPAF +S+L  +F+IG+LIY+PF+ IDL++SN+LLA+GM MV+PMT+SL
Sbjct  131  RKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISL  190

Query  193  PLKMLLFVLINGWT  206
            P+K+L+F+L  GW 
Sbjct  191  PFKLLIFLLAGGWD  204

145) hcrR in NC_017390


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  146 bits (539),  Expect = 7e-37, Method: Compositional matrix adjust.
 Identities = 82/194 (43%), Positives = 141/194 (73%), Gaps = 3/194 (1%)

Query  13   LFLGALSLIPMLMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVF  72
            LFL  LS++P+++++ T FLK+++V+ I RNA+G+QQVPPN+ALYG+AL  +LF+M+P +
Sbjct  14   LFL--LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTL  71

Query  73   NQMQQQFSQVPADLSSMDNLKTSVSNGVAPLQKFMTHNTDPDILIHLQENSVRMWPKEMS  132
              ++++   V    ++        S+++AP ++F+  N++      +++   R WP ++ 
Sbjct  72   LAVKERWHPVQVAGAPFWT-SEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIK  130

Query  133  DSVSKDNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSL  192
              +  D+LL++IPAF +S+L  +F+IG+LIY+PF+ IDL++SN+LLA+GM MV+PMT+SL
Sbjct  131  RKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISL  190

Query  193  PLKMLLFVLINGWT  206
            P+K+L+F+L  GW 
Sbjct  191  PFKLLIFLLAGGWD  204

146) hrcR in NC_012214


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  146 bits (539),  Expect = 7e-37, Method: Compositional matrix adjust.
 Identities = 82/194 (43%), Positives = 141/194 (73%), Gaps = 3/194 (1%)

Query  13   LFLGALSLIPMLMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVF  72
            LFL  LS++P+++++ T FLK+++V+ I RNA+G+QQVPPN+ALYG+AL  +LF+M+P +
Sbjct  14   LFL--LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTL  71

Query  73   NQMQQQFSQVPADLSSMDNLKTSVSNGVAPLQKFMTHNTDPDILIHLQENSVRMWPKEMS  132
              ++++   V    ++        S+++AP ++F+  N++      +++   R WP ++ 
Sbjct  72   LAVKERWHPVQVAGAPFWT-SEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIK  130

Query  133  DSVSKDNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSL  192
              +  D+LL++IPAF +S+L  +F+IG+LIY+PF+ IDL++SN+LLA+GM MV+PMT+SL
Sbjct  131  RKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISL  190

Query  193  PLKMLLFVLINGWT  206
            P+K+L+F+L  GW 
Sbjct  191  PFKLLIFLLAGGWD  204

147) hrcR in NC_010694


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  145 bits (535),  Expect = 2e-36, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 141/194 (73%), Gaps = 3/194 (1%)

Query  13   LFLGALSLIPMLMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVF  72
            LFL  LS++P+++++ T FLK+++V+ I RNA+G+QQVPPN+ALYG+AL  +LF+M+P +
Sbjct  14   LFL--LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTL  71

Query  73   NQMQQQFSQSPADLSSMDSLKNSVTHGVAPLQKFMTHNTDPDILIHLQENSVRMWPKEMS  132
              ++++        ++  +  +  + ++AP ++F+  N++      +++   R WP ++ 
Sbjct  72   LAVKERWHPVQVAGAPFWT-SEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIK  130

Query  133  DSVSKDNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSL  192
              +  D+LL++IPAF +S+L  +F+IG+LIY+PF+ IDL++SN+LLA+GM MV+PMT+SL
Sbjct  131  RKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISL  190

Query  193  PLKMLLFVLINGWT  206
            P+K+L+F+L  GW 
Sbjct  191  PFKLLIFLLAGGWD  204

148) Marme_1071 in NC_015276


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  144 bits (530),  Expect = 4e-36, Method: Compositional matrix adjust.
 Identities = 77/188 (41%), Positives = 138/188 (74%), Gaps = 7/188 (3%)

Query  22   PIMLIVCSAFLKISMVLMITRNAMGVQQVPPNMAIYGIALAATMFVMAPVFSDIGNK---  78
            P+++++ ++FLK+++V+ I RNA+G+QQVPPN+A+YG+AL  ++F+M+P +  + ++   
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP  80

Query  79   VKETPPDFSSLEGMQTSANKIVGPLQAFMSRNSNPDVTTHMMDNTARLWPKEMASKVTKD  138
            V+ + + F + E      +K ++P + F+ +NS+   +    +   R WP ++  K+  D
Sbjct  81   VQVAGAPFWTSE----WDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPD  136

Query  139  DLMIVIPSFMLSELKAGLQIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTISLPLKILL  198
             L+I+IP+F +S+L  +++IG+LIY+PF+ IDL++SN+LLA+GM MVSPMTISLP+K+L+
Sbjct  137  SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLI  196

Query  199  FVLVDGWG  206
            F+L +GW+
Sbjct  197  FLLAGGWD  204

149) yscR in NC_016642


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  142 bits (524),  Expect = 1e-35, Method: Compositional matrix adjust.
 Identities = 89/194 (46%), Positives = 138/194 (72%), Gaps = 13/194 (6%)

Query  28   TSFIKLSVVLLLVRNALGVQQIPPNMALNALAIILSGYIMLPVFLQTFEILEKGNYSIAT  87
            TSF+KL+VV+ ++RNALG+QQ+PPN+AL ++A++LS +IM P +L       K       
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-----KERWHPVQ  82

Query  88   VEDMKTTFVAAK------GPLEEFLAKHADSKEKAFFLEASRQLWPAEVADSMSADSIAI  141
            V +  + F ++       +P  +FL K+++ KE  +F +  ++ WP ++   + +DS+ I
Sbjct  83   VAG--APFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLI  140

Query  142  LLPAYTVSQLREAFEIGFLLYLPFLAIDLVVSNILLAMGMMMVSPLTISLPFKLFLFVAV  201
            L+PA+TVSQL +AF IG+L+YLPFLAIDL++SNILLAMGMMMVSP+TISLPFKL++F+  
Sbjct  141  LIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLA  200

Query  202  DGWSRLILGLIKTY  215
            +GW   +  L++++
Sbjct  201  GGWDLTLAQLVQSF  214

150) fliP in NC_015259


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  141 bits (519),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 92/215 (43%), Positives = 153/215 (72%), Gaps = 7/215 (3%)

Query  35   SLTERAVQLVALLTVLSLAPSILVMVTSFTRIVVVLSLLRSAIGLQTAPPNMVMVSLALF  94
            SL + ++QL+++L +LS+ P I+VM TSF ++ VV+S+LR+A+G+Q  PPN+ + ++AL 
Sbjct  2    SLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALV  61

Query  95   LTAFIMAPTLQVAYEEGVQPL-VEGTIEFDQAFE-RASTPFHAFMLSQVREKDLALFQEL  152
            L+ FIM+PTL +A  E  +P+ V G+       + +A +P++ F+  +  EK+   F++L
Sbjct  62   LSLFIMGPTL-LAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  153  SGQEAPETQEDL----SFQTLIPAFMISELRRAFEIGFLLYLPFLIIDLVVASVLMSMGM  208
              +  PE         S+  LIPAF +S+L +AF IG+L+YLPFL IDL+++++L++MGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  209  MMLPPVVISLPFKLIFFVLVDGWNLVAGSLVRSFG  243
            MM++P+ ISLPFKL++F+L +GW+L  + LV+SF+
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

151) hrcR in NC_016830


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  141 bits (519),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 83/196 (43%), Positives = 140/196 (72%), Gaps = 3/196 (1%)

Query  18   ISLVPLLLIICSAFLKIAIVLTITRNAIGVQQVPPNMALYAIALAATLFIMAPVGHNIAE  77
            +S++PL++++ ++FLK+A+V++I RNA+G+QQVPPN+ALY++AL  +LFIM+P    + E
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKE  76

Query  78   QLKERPLDFSNTEALQGS-ALNAIKPLQAFMSRNTNPDILAHLLENTQRMWPKERAEQAS  136
            +   +P++ + +    +    +A+ P + F+ +N++      + +  +R WP +   +  
Sbjct  77   RW--HPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIK  134

Query  137  RDDLMLLIPAFMLSELEAGFQMGFLIYIPFIVIDLIVSNLLLALGMQMVAPMTISLPLKL  196
             D L++LIPAF +S+L  +F++G+LIY+PF+ IDL++SN+LLA+GM MV+PMTISLP+KL
Sbjct  135  PDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKL  194

Query  197  LIFVLVQGWTQLLDSL  212
            LIF+L  GW   L  L
Sbjct  195  LIFLLAGGWDLTLAQL  210

152) fliP in NC_007498


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  141 bits (519),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 89/216 (42%), Positives = 153/216 (71%), Gaps = 15/216 (6%)

Query  40   PSTLMQILLIMTVLSVAPAILLMTTAFIRLAVVLSFLRQAMGTQQMPPNQVIIGLSLFLT  99
            P + +Q++ I+ +LS+ P I++M T+F++LAVV+S+LR+A+G QQ+PPN  + G++L L+
Sbjct  4    PDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLS  63

Query  100  FFVMSPVFNQIND--QAVQ----PYLTQKIDQKQALTLAVEPMRQFMFSQTTESELSLLM  153
            +F+M+P +  +++  ++VQ    P+ T   D K     A+ P RQF+  ++ E E + + 
Sbjct  64   LFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSK-----ALAPYRQFLQKNSEEKEANYFR  118

Query  154  EI--SGHPDPAGKEDVPT--LTLIPAFMLSELKRAFQIGFMIYIPFLVIDMIVASVLMSM  209
            ++     P+   +   P   L LIPAF +S+L +AF+IG++IY+PFL ID++++++L++M
Sbjct  119  NLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAM  178

Query  210  GMMMLPPIIISLPFKLLLFVLVDGWTLIVGSLVQSF  245
            GMMM++P+ ISLPFKLL+F+L +GW L ++ LVQSF
Sbjct  179  GMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

153) hrcR in NC_006834


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  141 bits (519),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 130/194 (68%), Gaps = 0/194 (0%)

Query  32   PFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAFKAAQN  91
            P+  ++ TS+ K+ VV+++LRNA+G+QQVPPN+ L G AL++S F+M+P  +      + 
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP  80

Query  92   YGAGSDNSRIVVLLDACREPFRQFLLKHTPEREKAFFMRSAQQIWPKDKATTLKSDDLLI  151
               ++   +          P+RQFL K++ E+E  +F    ++ WP D    +K+D LLI
Sbjct  81   VQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLI  140

Query  152  LAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVAM  211
            L PAFT+S+LT+AFRIG+L+YL F+ IDL+++N L+AMG+  V+P  +++PFKLL+F+  
Sbjct  141  LIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLA  200

Query  212  DGWSMLIHGLVLSY  225
            +GW + +  LV S+
Sbjct  201  GGWDLTLAQLVQSF  214

154) XOO_0095 in NC_007705


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  141 bits (518),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 130/194 (68%), Gaps = 0/194 (0%)

Query  20   PFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAFKAAQN  79
            P+  ++ TS+ K+ VV+++LRNA+G+QQVPPN+ L G AL++S F+M+P  +      + 
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP  80

Query  80   YGAGSDNSRIVVLLDACREPFRQFLLKHTPEREKAFFMRSAQQIWPKDKATTLKSDDLLI  139
               ++   +          P+RQFL K++ E+E  +F    ++ WP D    +K+D LLI
Sbjct  81   VQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLI  140

Query  140  LAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVAM  199
            L PAFT+S+LT+AFRIG+L+YL F+ IDL+++N L+AMG+  V+P  +++PFKLL+F+  
Sbjct  141  LIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLA  200

Query  200  DGWSMLIHGLVLSY  213
            +GW + +  LV S+
Sbjct  201  GGWDLTLAQLVQSF  214

155) epaP in NC_010717


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  141 bits (518),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 130/194 (68%), Gaps = 0/194 (0%)

Query  20   PFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAFKAAQN  79
            P+  ++ TS+ K+ VV+++LRNA+G+QQVPPN+ L G AL++S F+M+P  +      + 
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP  80

Query  80   YGAGSDNSRIVVLLDACREPFRQFLLKHTPEREKAFFMRSAQQIWPKDKATTLKSDDLLI  139
               ++   +          P+RQFL K++ E+E  +F    ++ WP D    +K+D LLI
Sbjct  81   VQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLI  140

Query  140  LAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVAM  199
            L PAFT+S+LT+AFRIG+L+YL F+ IDL+++N L+AMG+  V+P  +++PFKLL+F+  
Sbjct  141  LIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLA  200

Query  200  DGWSMLIHGLVLSY  213
            +GW + +  LV S+
Sbjct  201  GGWDLTLAQLVQSF  214

156) PSEBR_a5382 in NC_015379


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  141 bits (518),  Expect = 4e-35, Method: Compositional matrix adjust.
 Identities = 85/198 (43%), Positives = 138/198 (70%), Gaps = 7/198 (3%)

Query  18   ISLVPLLLIICSAFLKIAIVLTITRNAIGVQQVPPNMALYAIALAATLFIMAPVGHNIAE  77
            +S++PL++++ ++FLK+A+V++I RNA+G+QQVPPN+ALY++AL  +LFIM+P    + E
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKE  76

Query  78   Q---VKERPLDFSNTEALQGSALNAIKPLQAFMSRNTNPDILAHLLENTQRMWPKERAEQ  134
            +   V+     F  +E       +A+ P + F+ +N++      + +  +R WP +   +
Sbjct  77   RWHPVQVAGAPFWTSE----WDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRK  132

Query  135  ASRDDLMLLIPAFMLSELEAGFQMGFLIYIPFIVIDLIVSNLLLALGMQMVAPMTISLPL  194
               D L++LIPAF +S+L  +F++G+LIY+PF+ IDL++SN+LLA+GM MV+PMTISLP+
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  195  KLLIFVLVQGWTQLLDSL  212
            KLLIF+L  GW   L  L
Sbjct  193  KLLIFLLAGGWDLTLAQL  210

157) XC_3016 in NC_007086


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  141 bits (517),  Expect = 4e-35, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 130/194 (68%), Gaps = 0/194 (0%)

Query  20   PFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAFKAAQN  79
            P+  ++ TS+ K+ VV+++LRNA+G+QQVPPN+ L G AL++S F+M+P  +      + 
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP  80

Query  80   YSPGADNSRVVVLLDACREPFRQFLLKHTREREKAFFIRSAQQIWPKDKADTLKPDDLLV  139
               ++   +          P+RQFL K++ E+E  +F    ++ WP D    +KPD LL+
Sbjct  81   VQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLI  140

Query  140  LAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVAL  199
            L PAFT+S+LT+AFRIG+L+YL F+ IDL+++N L+AMG+  V+P  +++PFKLL+F+  
Sbjct  141  LIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLA  200

Query  200  DGWSMLIHGLVLSY  213
            +GW + +  LV S+
Sbjct  201  GGWDLTLAQLVQSF  214

158) hrcR in NC_003902


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  141 bits (517),  Expect = 4e-35, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 130/194 (68%), Gaps = 0/194 (0%)

Query  20   PFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAFKAAQN  79
            P+  ++ TS+ K+ VV+++LRNA+G+QQVPPN+ L G AL++S F+M+P  +      + 
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP  80

Query  80   YSPGADNSRVVVLLDACREPFRQFLLKHTREREKAFFIRSAQQIWPKDKADTLKPDDLLV  139
               ++   +          P+RQFL K++ E+E  +F    ++ WP D    +KPD LL+
Sbjct  81   VQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLI  140

Query  140  LAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVAL  199
            L PAFT+S+LT+AFRIG+L+YL F+ IDL+++N L+AMG+  V+P  +++PFKLL+F+  
Sbjct  141  LIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLA  200

Query  200  DGWSMLIHGLVLSY  213
            +GW + +  LV S+
Sbjct  201  GGWDLTLAQLVQSF  214

159) hrcR in NC_017271


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  141 bits (517),  Expect = 4e-35, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 130/194 (68%), Gaps = 0/194 (0%)

Query  20   PFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAFKAAQN  79
            P+  ++ TS+ K+ VV+++LRNA+G+QQVPPN+ L G AL++S F+M+P  +      + 
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP  80

Query  80   YSPGAENSRVVVLLDACREPFRQFLLKHTREREKAFFIRSAQQIWPKDKADTLKPDDLLV  139
               ++   +          P+RQFL K++ E+E  +F    ++ WP D    +KPD LL+
Sbjct  81   VQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLI  140

Query  140  LAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVAL  199
            L PAFT+S+LT+AFRIG+L+YL F+ IDL+++N L+AMG+  V+P  +++PFKLL+F+  
Sbjct  141  LIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLA  200

Query  200  DGWSMLIHGLVLSY  213
            +GW + +  LV S+
Sbjct  201  GGWDLTLAQLVQSF  214

160) xccb100_3079 in NC_010688


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  141 bits (517),  Expect = 4e-35, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 130/194 (68%), Gaps = 0/194 (0%)

Query  20   PFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAFKAAQN  79
            P+  ++ TS+ K+ VV+++LRNA+G+QQVPPN+ L G AL++S F+M+P  +      + 
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP  80

Query  80   YSPGADNSRVVVLLDACREPFRQFLLKHTREREKAFFIRSAQQIWPKDKADTLKPDDLLV  139
               ++   +          P+RQFL K++ E+E  +F    ++ WP D    +KPD LL+
Sbjct  81   VQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLI  140

Query  140  LAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVAL  199
            L PAFT+S+LT+AFRIG+L+YL F+ IDL+++N L+AMG+  V+P  +++PFKLL+F+  
Sbjct  141  LIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLA  200

Query  200  DGWSMLIHGLVLSY  213
            +GW + +  LV S+
Sbjct  201  GGWDLTLAQLVQSF  214

161) hrcR in NC_003919


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  141 bits (517),  Expect = 4e-35, Method: Compositional matrix adjust.
 Identities = 79/194 (41%), Positives = 130/194 (68%), Gaps = 0/194 (0%)

Query  20   PFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAFKAAQN  79
            P+  ++ TS+ K+ VV+++LRNA+G+QQVPPN+ L G AL++S F+M+P  +      + 
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP  80

Query  80   YGAGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLKSDDLLV  139
               ++   +          P+RQFL K++ E+E  +F    ++ WP D    +K+D LL+
Sbjct  81   VQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLI  140

Query  140  LAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVAM  199
            L PAFT+S+LT+AFRIG+L+YL F+ IDL+++N L+AMG+  V+P  +++PFKLL+F+  
Sbjct  141  LIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLA  200

Query  200  DGWSMLIHGLVLSY  213
            +GW + +  LV S+
Sbjct  201  GGWDLTLAQLVQSF  214

162) hrcR in NC_016010


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  141 bits (517),  Expect = 4e-35, Method: Compositional matrix adjust.
 Identities = 79/194 (41%), Positives = 130/194 (68%), Gaps = 0/194 (0%)

Query  20   PFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAFKAAQN  79
            P+  ++ TS+ K+ VV+++LRNA+G+QQVPPN+ L G AL++S F+M+P  +      + 
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP  80

Query  80   YGAGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLKSDDLLV  139
               ++   +          P+RQFL K++ E+E  +F    ++ WP D    +K+D LL+
Sbjct  81   VQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLI  140

Query  140  LAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVAM  199
            L PAFT+S+LT+AFRIG+L+YL F+ IDL+++N L+AMG+  V+P  +++PFKLL+F+  
Sbjct  141  LIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLA  200

Query  200  DGWSMLIHGLVLSY  213
            +GW + +  LV S+
Sbjct  201  GGWDLTLAQLVQSF  214

163) XAC29_02060 in NC_020800


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  141 bits (517),  Expect = 4e-35, Method: Compositional matrix adjust.
 Identities = 79/194 (41%), Positives = 130/194 (68%), Gaps = 0/194 (0%)

Query  20   PFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAFKAAQN  79
            P+  ++ TS+ K+ VV+++LRNA+G+QQVPPN+ L G AL++S F+M+P  +      + 
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP  80

Query  80   YGAGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLKSDDLLV  139
               ++   +          P+RQFL K++ E+E  +F    ++ WP D    +K+D LL+
Sbjct  81   VQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLI  140

Query  140  LAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVAM  199
            L PAFT+S+LT+AFRIG+L+YL F+ IDL+++N L+AMG+  V+P  +++PFKLL+F+  
Sbjct  141  LIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLA  200

Query  200  DGWSMLIHGLVLSY  213
            +GW + +  LV S+
Sbjct  201  GGWDLTLAQLVQSF  214

164) hrcR in NC_007508


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  141 bits (517),  Expect = 4e-35, Method: Compositional matrix adjust.
 Identities = 79/194 (41%), Positives = 130/194 (68%), Gaps = 0/194 (0%)

Query  20   PFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAFKAAQN  79
            P+  ++ TS+ K+ VV+++LRNA+G+QQVPPN+ L G AL++S F+M+P  +      + 
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP  80

Query  80   YGAGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLKSDDLLV  139
               ++   +          P+RQFL K++ E+E  +F    ++ WP D    +K+D LL+
Sbjct  81   VQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLI  140

Query  140  LAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVAM  199
            L PAFT+S+LT+AFRIG+L+YL F+ IDL+++N L+AMG+  V+P  +++PFKLL+F+  
Sbjct  141  LIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLA  200

Query  200  DGWSMLIHGLVLSY  213
            +GW + +  LV S+
Sbjct  201  GGWDLTLAQLVQSF  214

165) hrcR in NC_020815


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  141 bits (517),  Expect = 4e-35, Method: Compositional matrix adjust.
 Identities = 79/194 (41%), Positives = 130/194 (68%), Gaps = 0/194 (0%)

Query  20   PFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAFKAAQN  79
            P+  ++ TS+ K+ VV+++LRNA+G+QQVPPN+ L G AL++S F+M+P  +      + 
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP  80

Query  80   YGAGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLKSDDLLV  139
               ++   +          P+RQFL K++ E+E  +F    ++ WP D    +K+D LL+
Sbjct  81   VQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLI  140

Query  140  LAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVAM  199
            L PAFT+S+LT+AFRIG+L+YL F+ IDL+++N L+AMG+  V+P  +++PFKLL+F+  
Sbjct  141  LIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLA  200

Query  200  DGWSMLIHGLVLSY  213
            +GW + +  LV S+
Sbjct  201  GGWDLTLAQLVQSF  214

166) Meso_0110 in NC_008254


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  140 bits (515),  Expect = 6e-35, Method: Compositional matrix adjust.
 Identities = 81/201 (41%), Positives = 147/201 (74%), Gaps = 3/201 (1%)

Query  20   LSFIPFIVVMGTAFTKISIVLMLLRNAIGVQQAPSGLVINSIALTLTVFVMVPVGNAIIT  79
            LS++P+I+VMGT+F K+++V+ +LRNA+G+QQ P+ + + ++AL L++F+M P   A+  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKE  76

Query  80   QVQQQQLGFTG-WENVSQLYSVVSEAFTGYLKQFSSPRELQFFMDAARKMWPETLHGQIT  138
            + +  Q++ +  W +  +  S    ++  +L++ S  +E ++F +  ++ WPE +  +I 
Sbjct  77   RWHPVQVAGAPFWTSEWD--SKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIK  134

Query  139  TDNVFILLPAHVTSELTRAFQIAFLIFLPFVVVDMVVSNILLAMGAMMVPPMLVSLPIKI  198
             D+++IL+PA   S+LT+AF+I++LI+LPF+ +D+++SNILLAMG MMV+PM +SLP+K+
Sbjct  135  PDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKL  194

Query  199  LLFVAADGWALLLHNLVLSYA  219
            L+F+ A+GW L L +LV S++
Sbjct  195  LIFLLAGGWDLTLAQLVQSFS  215

167) hrcR in NC_017267


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  140 bits (514),  Expect = 7e-35, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 130/194 (68%), Gaps = 0/194 (0%)

Query  20   PFAALVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAFKAAQN  79
            P+  ++ TS+ K+ VV+++LRNA+G+QQVPPN+ L G AL++S F+M+P  +      + 
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP  80

Query  80   YGAGSDNSRIVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLKSDDLLI  139
               ++   +          P+RQFL K++ E+E  +F    ++ WP D    +K+D LLI
Sbjct  81   VQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLI  140

Query  140  LAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVAM  199
            L PAFT+S+LT+AFRIG+L+YL F+ IDL+++N L+AMG+  V+P  +++PFKLL+F+  
Sbjct  141  LIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLA  200

Query  200  DGWSILIHGLVLSY  213
            +GW + +  LV S+
Sbjct  201  GGWDLTLAQLVQSF  214

168) hrcR in NC_015856


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  140 bits (514),  Expect = 8e-35, Method: Compositional matrix adjust.
 Identities = 78/192 (41%), Positives = 133/192 (70%), Gaps = 10/192 (5%)

Query  28   TSYTKIVVVLGLLRNALGLQQVPPTSVLNGVAIIISCFVMAPVGMEAVKHAQLSSEQTAG  87
            TS+ K+ VV+++LRNALG+QQVPP   L G A+++S F+M+P  + AVK+ +  + Q AG
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGP-TLLAVKE-RWHPVQVAG  85

Query  88   SQIMPLFDAARE-----PFRTFLRKHTSEREKAFFMRSARQIWPPERAAELKPDDLIVLA  142
            +   P+  + ++     P+R FL+K++ E+E  +F    ++ WP +    +KPD L++L 
Sbjct  86   A---PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILI  142

Query  143  PAFVLSELTAAFKIGFLLYLCFIVIDLVIANVLMALGLSQVNPSNVAIPFKLLLFISLDG  202
            PAF +S+LT AF+IG+L+YL F+ IDL+I+N+L+A+G+  V+P  +++PFKLL+F+  +G
Sbjct  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202

Query  203  WSTLVHGLISTY  214
            W   +  L+ ++
Sbjct  203  WDLTLAQLVQSF  214

169) sctR in NC_014225


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  137 bits (505),  Expect = 5e-34, Method: Compositional matrix adjust.
 Identities = 88/213 (42%), Positives = 150/213 (71%), Gaps = 10/213 (4%)

Query  83   AVLTILSMLPFIVMILTSFMKIVIVLSLLRNALGVQQAPPNQIINGVGLMLSMFIMYPTV  142
            ++L +LS+LP+I+++ TSF+K+ +V+S+LRNALG+QQ PPN  + G +L+LS+FIM PT+
Sbjct  12   GILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTL  71

Query  143  VEMYEVSQKATQEMQAPDSVISSGSSTYILTIADATKEPLRTFLIDNSSVRHRALFFRMA  202
            +    V ++  + +Q +++ + ++           +  P R FL  NS  ++   F  + 
Sbjct  72   LA---VKER-WHPVQVAGAPFWTSEW------DSKALAPYRQFLQKNSEEKEANYFRNLI  121

Query  203  YKVLPEKYRPNLKPEDFIIVVPSFITSQLKDAFEIGVLIYIPFFVIDLVTSNILLAMGMM  262
             +  PE  + ++KP+ ++I++P+F  SQL +AF IG+LIY+PF+ IDL+ SNILLAMGMM
Sbjct  122  KRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMM  181

Query  263  MLSPVTISMPLKLFLLVMLDGWTLLVEGLVNTF  295
            M+SP+TIS+P+KL+++++ +GW L +  LV++F
Sbjct  182  MVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

170) DaAHT2_1718 in NC_014216


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  137 bits (504),  Expect = 5e-34, Method: Compositional matrix adjust.
 Identities = 87/214 (41%), Positives = 149/214 (70%), Gaps = 18/214 (8%)

Query  44   LIELLLVFTVLAMAPAILLMMTCFTRLIVVFSFLRNAIGTQQMPPNQVLVGLAMFLTLFI  103
            LI +L+++++L++   I++M T F +L VVFS+LRNA+G QQ+PPN  L G+A+ L+LFI
Sbjct  10   LIGILFLLSILPL---IIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  104  MAPVFSQIN------QTAIGPYMEEEIGAEEALQLAAEPIREFMFKQTREKDLELFLGLA  157
            M+P +  ++      Q A +P+   E ++      A  P R+F+ K++ EK+ + F  L 
Sbjct  67   MGPTLLAVKERWHPVQVAGAPFWTSEWDSK-----ALAPYRQFLQKNSEEKEANYFRNLI  121

Query  158  RAPRPQT-KDDVPTH---ILIPAFMISELKTAFTIGFVLFLPFLVIDMVVASVLLSMGMM  213
            +  +P+  K  +  +   ILIPAF +S+L  AF IG++++LPFL ID++++++LL+MGMM
Sbjct  122  KRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMM  181

Query  214  MLPPIMVALPFKILLFVLVDGWYLIVGSLVRSFG  247
            M++P+ ++LPFK+L+F+L +GW L ++ LV+SF+
Sbjct  182  MVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

171) fliP in NC_012559


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  136 bits (499),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 81/196 (42%), Positives = 138/196 (71%), Gaps = 7/196 (3%)

Query  59   IPALLLMMTAFTRIVIVLSLLRQAIGLMQSPPNQVIVGLSLFLTLFVMAPVFDQAYREAW  118
            +P +++M T+F ++ +V+S+LR+A+G+ Q PPN  + G++L L+LF+M+P +  A +E W
Sbjct  20   LPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTL-LAVKERW  78

Query  119  LPYSDSQMNFMQA--AEKGVQPFKGFMLKQTREKDLAFFVEIAREA-PPATPADV---SL  172
             P   +   F  +    K++ P++ F+ K++ EK+  +F ++ + + P      +   SL
Sbjct  79   HPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSL  138

Query  173  KTLIPAFVVSELKTAFQIGFMVFIPFLIIDLVVASVLMAMGMMMVSPVIISLPFKLMLFV  232
              LIPAF VS+L  AF+IG+++++PFL IDL+++++L+AMGMMMVSP+ ISLPFKL++F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  233  LVDGWTLLIGSLVQSF  248
            L +GW L ++ LVQSF
Sbjct  199  LAGGWDLTLAQLVQSF  214

172) rscR in NC_012660


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  136 bits (498),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 82/196 (42%), Positives = 135/196 (69%), Gaps = 1/196 (0%)

Query  21   MPMLLVVCTAFLKIVIVLMITRNAIGVQQVPPSMAINGIALATTLFIMAPVGYEIAESVK  80
            +P+++V+ T+FLK+ +V+ I RNA+G+QQVPP++A+ G+AL  +LFIM+P    + E   
Sbjct  20   LPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWH  79

Query  81   ALPLDLSNVQTLLQTANEAIKPLRAFMLRNIDPDVLTHLLENTARLWPAQMAQEVQREDL  140
            ++ +  +   T  +  + A+ P R F+ +N +      + +   R WP ++ + ++ + L
Sbjct  80   PVQVAGAPFWTS-EWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSL  138

Query  141  ILLIPAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTISLPLKLLLFV  200
            ++LIPAF +SQL  +F IG+LIY+PF+ IDL++SN+LLA+GM MVSPMTISLP+KLL+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  201  MVSGWSRLLDSLFLSY  216
            + +GW   L  L  S+
Sbjct  199  LAGGWDLTLAQLVQSF  214

173) H045_00190 in NC_020209


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  136 bits (499),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 83/200 (42%), Positives = 139/200 (70%), Gaps = 3/200 (1%)

Query  18   MSLLPMLLVVCTAFLKIVIVLMITRNAIGVQQVPPSMAINGIALAATLFVMAPVGYQIAE  77
            +S+LP+++V+ T+FLK+ +V+ I RNA+G+QQVPP++A+ G+AL  +LF+M+P    + E
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKE  76

Query  78   NLKTSPLDMSNVQTLQAT-GLVAIQPLRTFMTRNTDPDVLTHLQENSARMWPPEMAQSTQ  136
              +  P++++      +  +  A+ P R F+ +N++      +++   R WP ++ +  +
Sbjct  77   --RWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIK  134

Query  137  REDWVLLIPAFVVSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTISLPLKL  196
             +  ++LIPAF VSQL  +F IG+LIY+PF+ IDL++SN+LLA+GM MVSPMTISLP+KL
Sbjct  135  PDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKL  194

Query  197  LLFVMVSGWSRLLDSLFLSY  216
            L+F++ +GW   L  L  S+
Sbjct  195  LIFLLAGGWDLTLAQLVQSF  214

174) fliP in NC_008435


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  136 bits (500),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 88/215 (41%), Positives = 143/215 (67%), Gaps = 7/215 (3%)

Query  43   GVTERAIQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLRTALGTATAPPNAVILALALF  102
            ++ + ++QLI++L +LSI P I++M TSF ++ VV+S+LR ALG    PPN  + ++AL 
Sbjct  2    SLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALV  61

Query  103  LTGFVMGPVLQKSYDDGIKPL--VANQITVEQAFERAVDPLRGFMQKNVREKDLKLFLDL  160
            L+ F+MGP L     +   P+   +  +   +   +A+ P R F+QKN  EK+ + F +L
Sbjct  62   LSLFIMGPTLLAV-KERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  161  SGEPPPATPDAM----SLRILVPAFMISELKRAFEIGFLLFLPFLVIDLVVASVLMSMGM  216
                 P          SL IL+PAF +S+L +AF IG+L++LPFL IDL+++++L++MGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  217  MMLPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSYG  251
            MM++P+ +SLPFKL++F+L +GW L  + LVQS++
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

175) Bamb_4215 in NC_008391


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  135 bits (497),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 88/198 (45%), Positives = 145/198 (74%), Gaps = 4/198 (2%)

Query  21   PFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIMAPVGMSIRDALQS  80
            P+  +M TS+ KL VV+++LR+ALGIQQVPPN+ L G+AL+LSLFIM+P  +++++  ++
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP  80

Query  81   RHFDASGQLSTSDIGVLADAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRADGIKDD  140
             +  A++ + TS+       AL+P ++FL  ++ +++ ++F       WP +    IK D
Sbjct  81   VQ-VAGAPFWTSE---WDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPD  136

Query  141  DLLVLVPSFTLAELTKAfqigfviyivfivvDLLVANILLALGMQMISPTTISVPFKLLL  200
             LL+L+P+FT+++LT+AF+IG++IY+ F+ +DLL++NILLA+GM M+SP TIS+PFKLL+
Sbjct  137  SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLI  196

Query  201  FVALDGWSLLVHGLVLSY  218
            F+  +GW L +  LV S+
Sbjct  197  FLLAGGWDLTLAQLVQSF  214

176) BamMC406_4737 in NC_010552


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  135 bits (497),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 88/198 (45%), Positives = 145/198 (74%), Gaps = 4/198 (2%)

Query  21   PFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIMAPVGMSIRDALQS  80
            P+  +M TS+ KL VV+++LR+ALGIQQVPPN+ L G+AL+LSLFIM+P  +++++  ++
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP  80

Query  81   RHFDASGQLSTSDIGVLADAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRADGIKDD  140
             +  A++ + TS+       AL+P ++FL  ++ +++ ++F       WP +    IK D
Sbjct  81   VQ-VAGAPFWTSE---WDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPD  136

Query  141  DLLVLVPSFTLAELTKAfqigfviyivfivvDLLVANILLALGMQMISPTTISVPFKLLL  200
             LL+L+P+FT+++LT+AF+IG++IY+ F+ +DLL++NILLA+GM M+SP TIS+PFKLL+
Sbjct  137  SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLI  196

Query  201  FVALDGWSLLVHGLVLSY  218
            F+  +GW L +  LV S+
Sbjct  197  FLLAGGWDLTLAQLVQSF  214

177) Bcen_3526 in NC_008061


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  135 bits (497),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 88/198 (45%), Positives = 145/198 (74%), Gaps = 4/198 (2%)

Query  21   PFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIMAPVGMSIRDALQA  80
            P+  +M TS+ KL VV+++LR+ALGIQQVPPN+ L G+AL+LSLFIM+P  +++++  ++
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP  80

Query  81   RHFDASGQLSTSDIGALADAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRADGIKDD  140
             +  A++ + TS+       AL+P ++FL  ++ +++ ++F       WP +    IK D
Sbjct  81   VQ-VAGAPFWTSE---WDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPD  136

Query  141  DLLVLVPSFTLAELTKAfqigfviyivfivvDLLVANILLALGMQMISPTTISVPFKLLL  200
             LL+L+P+FT+++LT+AF+IG++IY+ F+ +DLL++NILLA+GM M+SP TIS+PFKLL+
Sbjct  137  SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLI  196

Query  201  FVALDGWSLLVHGLVLSY  218
            F+  +GW L +  LV S+
Sbjct  197  FLLAGGWDLTLAQLVQSF  214

178) Bcen2424_4840 in NC_008543


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  135 bits (497),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 88/198 (45%), Positives = 145/198 (74%), Gaps = 4/198 (2%)

Query  21   PFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIMAPVGMSIRDALQA  80
            P+  +M TS+ KL VV+++LR+ALGIQQVPPN+ L G+AL+LSLFIM+P  +++++  ++
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP  80

Query  81   RHFDASGQLSTSDIGALADAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRADGIKDD  140
             +  A++ + TS+       AL+P ++FL  ++ +++ ++F       WP +    IK D
Sbjct  81   VQ-VAGAPFWTSE---WDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPD  136

Query  141  DLLVLVPSFTLAELTKAfqigfviyivfivvDLLVANILLALGMQMISPTTISVPFKLLL  200
             LL+L+P+FT+++LT+AF+IG++IY+ F+ +DLL++NILLA+GM M+SP TIS+PFKLL+
Sbjct  137  SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLI  196

Query  201  FVALDGWSLLVHGLVLSY  218
            F+  +GW L +  LV S+
Sbjct  197  FLLAGGWDLTLAQLVQSF  214

179) bcscR in NC_011001


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  135 bits (497),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 88/198 (45%), Positives = 145/198 (74%), Gaps = 4/198 (2%)

Query  21   PFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIMAPVGMSIRDALQA  80
            P+  +M TS+ KL VV+++LR+ALGIQQVPPN+ L G+AL+LSLFIM+P  +++++  ++
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP  80

Query  81   RHFDASGQLSTSDIGALADAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRADGIKDD  140
             +  A++ + TS+       AL+P ++FL  ++ +++ ++F       WP +    IK D
Sbjct  81   VQ-VAGAPFWTSE---WDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPD  136

Query  141  DLLVLVPSFTLAELTKAfqigfviyivfivvDLLVANILLALGMQMISPTTISVPFKLLL  200
             LL+L+P+FT+++LT+AF+IG++IY+ F+ +DLL++NILLA+GM M+SP TIS+PFKLL+
Sbjct  137  SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLI  196

Query  201  FVALDGWSLLVHGLVLSY  218
            F+  +GW L +  LV S+
Sbjct  197  FLLAGGWDLTLAQLVQSF  214

180) Bcenmc03_5444 in NC_010515


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  135 bits (497),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 88/198 (45%), Positives = 145/198 (74%), Gaps = 4/198 (2%)

Query  21   PFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIMAPVGMSIRDALQA  80
            P+  +M TS+ KL VV+++LR+ALGIQQVPPN+ L G+AL+LSLFIM+P  +++++  ++
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP  80

Query  81   RHFDASGQLSTSDIGALADAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRADGIKDD  140
             +  A++ + TS+       AL+P ++FL  ++ +++ ++F       WP +    IK D
Sbjct  81   VQ-VAGAPFWTSE---WDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPD  136

Query  141  DLLVLVPSFTLAELTKAfqigfviyivfivvDLLVANILLALGMQMISPTTISVPFKLLL  200
             LL+L+P+FT+++LT+AF+IG++IY+ F+ +DLL++NILLA+GM M+SP TIS+PFKLL+
Sbjct  137  SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLI  196

Query  201  FVALDGWSLLVHGLVLSY  218
            F+  +GW L +  LV S+
Sbjct  197  FLLAGGWDLTLAQLVQSF  214

181) MYA_4948 in NC_017921


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  135 bits (497),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 87/198 (44%), Positives = 145/198 (74%), Gaps = 4/198 (2%)

Query  21   PFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIMAPVGMSIRDALQA  80
            P+  +M TS+ KL VV+++LR+ALGIQQVPPN+ L G+AL+LSLFIM+P  +++++  ++
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP  80

Query  81   RHFDAAGQLSTADIGVLADAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRADGIKDD  140
             +  A++ + T++       AL+P ++FL  ++ +++ ++F       WP +    IK D
Sbjct  81   VQ-VAGAPFWTSE---WDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPD  136

Query  141  DLLVLVPSFTLAELTKAfqigfviyivfivvDLLVANILLALGMQMISPTTISVPFKLLL  200
             LL+L+P+FT+++LT+AF+IG++IY+ F+ +DLL++NILLA+GM M+SP TIS+PFKLL+
Sbjct  137  SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLI  196

Query  201  FVALDGWSLLVHGLVLSY  218
            F+  +GW L +  LV S+
Sbjct  197  FLLAGGWDLTLAQLVQSF  214

182) Bmul_3754 in NC_010086


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  135 bits (495),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 86/198 (44%), Positives = 145/198 (74%), Gaps = 4/198 (2%)

Query  21   PFAALMVTSYTKLVVVLGLLRSALGVQQVPPNLVLNGIALILSLFIMAPVGMSIRDALQA  80
            P+  +M TS+ KL VV+++LR+ALG+QQVPPN+ L G+AL+LSLFIM+P  +++++  ++
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP  80

Query  81   RHFDASGQLSTADVGALADAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRADGIKDD  140
             +  A++ + T++       AL+P ++FL  ++ +++ ++F       WP +    IK D
Sbjct  81   VQ-VAGAPFWTSE---WDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPD  136

Query  141  DLLVLVPSFTLAELTKAfqigfviyivfivvDLLVANILLALGMQMISPTTISVPFKLLL  200
             LL+L+P+FT+++LT+AF+IG++IY+ F+ +DLL++NILLA+GM M+SP TIS+PFKLL+
Sbjct  137  SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLI  196

Query  201  FVALDGWSLLVHGLVLSY  218
            F+  +GW L +  LV S+
Sbjct  197  FLLAGGWDLTLAQLVQSF  214

183) yscR in NC_010805


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  135 bits (495),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 86/198 (44%), Positives = 145/198 (74%), Gaps = 4/198 (2%)

Query  21   PFAALMVTSYTKLVVVLGLLRSALGVQQVPPNLVLNGIALILSLFIMAPVGMSIRDALQA  80
            P+  +M TS+ KL VV+++LR+ALG+QQVPPN+ L G+AL+LSLFIM+P  +++++  ++
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP  80

Query  81   RHFDASGQLSTADVGALADAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRADGIKDD  140
             +  A++ + T++       AL+P ++FL  ++ +++ ++F       WP +    IK D
Sbjct  81   VQ-VAGAPFWTSE---WDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPD  136

Query  141  DLLVLVPSFTLAELTKAfqigfviyivfivvDLLVANILLALGMQMISPTTISVPFKLLL  200
             LL+L+P+FT+++LT+AF+IG++IY+ F+ +DLL++NILLA+GM M+SP TIS+PFKLL+
Sbjct  137  SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLI  196

Query  201  FVALDGWSLLVHGLVLSY  218
            F+  +GW L +  LV S+
Sbjct  197  FLLAGGWDLTLAQLVQSF  214

184) Bcep1808_5328 in NC_009255


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  135 bits (497),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 87/198 (44%), Positives = 145/198 (74%), Gaps = 4/198 (2%)

Query  21   PFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIMAPVGMSIRDALQA  80
            P+  +M TS+ KL VV+++LR+ALGIQQVPPN+ L G+AL+LSLFIM+P  +++++  ++
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP  80

Query  81   RHFDAAGQLSTADIGVLADAALPPIKDFLVSHTRQRDREFFVRTATSVWPKNRADGIKDD  140
             +  A++ + T++       AL+P ++FL  ++ +++ ++F       WP +    IK D
Sbjct  81   VQ-VAGAPFWTSE---WDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPD  136

Query  141  DLLVLVPSFTLAELTKAfqigfviyivfivvDLLVANILLALGMQMISPTTISVPFKLLL  200
             LL+L+P+FT+++LT+AF+IG++IY+ F+ +DLL++NILLA+GM M+SP TIS+PFKLL+
Sbjct  137  SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLI  196

Query  201  FVALDGWSLLVHGLVLSY  218
            F+  +GW L +  LV S+
Sbjct  197  FLLAGGWDLTLAQLVQSF  214

185) fliP in NC_011757


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  135 bits (494),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 87/210 (42%), Positives = 148/210 (71%), Gaps = 9/210 (4%)

Query  56   IQLVALLTVLSLAPGLLVMVTSFTRFAVAFSFLRSGLGLQSTPANLFLVSLALFMTFYVM  115
            +QL+++L +LS+ P ++VM TSF ++AV FS+LR++LG+Q  P+N+ L ++AL +++++M
Sbjct  8    LQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIM  67

Query  116  APTF---DRAWNEGVKPLQENRISEEEAFGKIVDPFREFMTQHVRPKDLQTFTDLASRTF  172
            +PT+      W+    +    + SE +  +K + P+R+F+ ++   K+ + F +L  RT 
Sbjct  68   GPTLLAVKERWHPVQVAGAPFWTSEWD--SKALAPYRQFLQKNSEEKEANYFRNLIKRTW  125

Query  173  PKAEAGEKI---DLRILIPAFMISELRRGFEIGFLIVLPFLVIDIIVSTIVMSMGMMMLP  229
            P  +   KI    L ILIPAF +S+L ++F IG+LI LPFL ID+++S I+++MGMMM++
Sbjct  126  P-EDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVS  184

Query  230  PTVISLPFKVLFFILIDGWNLLVSGLVRSF  259
            P  ISLPFK+L+F+L +GW+L ++ LV+SF
Sbjct  185  PMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

186) fliP in NC_012808


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  135 bits (494),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 87/210 (42%), Positives = 148/210 (71%), Gaps = 9/210 (4%)

Query  56   IQLVALLTVLSLAPGLLVMVTSFTRFAVAFSFLRSGLGLQSTPANLFLVSLALFMTFYVM  115
            +QL+++L +LS+ P ++VM TSF ++AV FS+LR++LG+Q  P+N+ L ++AL +++++M
Sbjct  8    LQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIM  67

Query  116  APTF---DRAWNEGVKPLQENRISEEEAFGKIVDPFREFMTQHVRPKDLQTFTDLASRTF  172
            +PT+      W+    +    + SE +  +K + P+R+F+ ++   K+ + F +L  RT 
Sbjct  68   GPTLLAVKERWHPVQVAGAPFWTSEWD--SKALAPYRQFLQKNSEEKEANYFRNLIKRTW  125

Query  173  PKAEAGEKI---DLRILIPAFMISELRRGFEIGFLIVLPFLVIDIIVSTIVMSMGMMMLP  229
            P  +   KI    L ILIPAF +S+L ++F IG+LI LPFL ID+++S I+++MGMMM++
Sbjct  126  P-EDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVS  184

Query  230  PTVISLPFKVLFFILIDGWNLLVSGLVRSF  259
            P  ISLPFK+L+F+L +GW+L ++ LV+SF
Sbjct  185  PMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

187) Btus_1509 in NC_014098


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  135 bits (494),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 80/199 (41%), Positives = 144/199 (73%), Gaps = 15/199 (7%)

Query  75   PGILVMITSFTRMIVVLSFVRSALAVQQTPPNQVLIGLALALTFFVMAPTLSQVNQ--QA  132
            P I+VM TSF ++ VV+S++R+AL++QQ PPN  L G+AL L++F+M+PTL  V++  ++
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP  80

Query  133  VQ----PYLRGELTQTQAIARAEVPFKHFMAKQTREKDLQLFLDYRNVALPD----RVED  184
            VQ    P+  +E       ++A  P+++F+ K++ EK+ + F +  + + P+    ++  
Sbjct  81   VQVAGAPFWTSEWD-----SKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKP  135

Query  185  IPMSLLVPAYTISELKTAFEIGFMIFIPFLIIDMVISSVLMAMGMMMLPPVIVSLPFKIL  244
             ++ +L+PA+T+S+L  AF IG++I++PFL ID++IS++L+AMGMMM++P+ +SLPFK+L
Sbjct  136  DSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLL  195

Query  245  LFVLADGWYLIVKSLLAGY  263
            +F+LA+GW L +  L+ ++
Sbjct  196  IFLLAGGWDLTLAQLVQSF  214

188) fliP in NC_021499


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  135 bits (495),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 85/210 (41%), Positives = 148/210 (71%), Gaps = 7/210 (3%)

Query  46   SLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILVGLALFLTMFI  105
            +LQ++ I+  LS++P ++++ TSF ++ +VFSILR+ALG+QQ P+N  L G+AL L++FI
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  106  MAPVF--DRVNRDALQPYLNEQLSAPDALAKAEVPIKDFMLAQTRASDLELFMRLSKRT-  162
            M+P +   +  ++++Q      + +++  +KA  P ++F+  ++   + + F  L KRT 
Sbjct  67   MGPTLLAVKERWHPVQV-AGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW  125

Query  163  --DIASP-DAAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSP  219
              DI     + +L IL+PAF  S+L  AF+IG++I++PFL IDL+++++L+AMGMMM+SP
Sbjct  126  PEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSP  185

Query  220  LIISLPFKIMLFVLVDGWALVIGTLASSFG  249
            + ISLPFK+++F+L +GW L ++ L  SF+
Sbjct  186  MTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

189) hrcR in NC_011983


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  134 bits (493),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 90/203 (45%), Positives = 138/203 (68%), Gaps = 7/203 (3%)

Query  18   ISILPVIAVVATSFTKIAVVLLIVRNAIGIQQTPPNLLVFAIAIVLSAFVMNPIL---QQ  74
            +SILP+I V++TSF K+AVV+ I+RNA+GIQQ PPN+ ++++A+VLS F+M P L   ++
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKE  76

Query  75   CWQVLLRADVHFDTINGLAAGLSEVGAPLKAFMMKFSDEEVRQFFVNSSQRIWGDTATLP  134
             W+ +  A+  F T +  + +L    AP + F+ K S+E   ++F N  +R W +     
Sbjct  77   RWHPVQVAGAPFWTSEWDSKAL----APYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRK  132

Query  135  ASPDDITVLTPSFLVSELTRAFEIGFLLYLPFLMIDFAVSAILVALGMQMMSPTVVSTPF  194
              PD + +L P+F VS+LT+AF IG+L+YLPFL ID+ +S IL+A+GM M+SP  +S PF
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  195  KLLLFVGVDGWRRLLEGLVLSYA  217
            KLL+F+  +GW   L  LV S++
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSFS  215

190) fliP in NC_017911


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  134 bits (493),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 88/214 (42%), Positives = 147/214 (69%), Gaps = 15/214 (7%)

Query  42   SLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTLFI  101
            +LQ++ I+  LS++P ++++ TSF ++ +VFSILR+ALG+QQ P+N  L G AL L+LFI
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  102  MAPVFDKVNQ--QALQ----PYLAEKLTAQDAIDKAQGPIKDFMLSQTRSSDLELFMRLS  155
            M+P +  V++  +++Q    P+ +    +     KA +P ++F+  ++   + + F  L 
Sbjct  67   MGPTLLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLI  121

Query  156  KRT---DIATP-DQAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMM  211
            KRT   DI       +L IL+PAF  S+L  AF+IG++I++PFL IDL+++++L+AMGMM
Sbjct  122  KRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMM  181

Query  212  MLSPLIISLPFKIMLFVLVDGWALIIGTLAGSFG  245
            M+SP+ ISLPFK+++F+L +GW L ++ L  SF+
Sbjct  182  MVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

191) fliP in NC_012660


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  134 bits (493),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 87/210 (42%), Positives = 146/210 (70%), Gaps = 7/210 (3%)

Query  42   SLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTLFI  101
            +LQ++ I+  LS++P ++++ TSF ++ +VFSILR+ALG+QQ P+N  L G AL L+LFI
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  102  MAPVFDKVNQ--QALQPYLAEKMTAQDAIDKAQGPIKDFMLSQTRSSDLELFMRLSKRT-  158
            M+P +  V++  +++Q   +    + +   KA +P ++F+  ++   + + F  L KRT 
Sbjct  67   MGPTLLAVKERWHPVQV-AGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW  125

Query  159  --DIATP-DQAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSP  215
              DI       +L IL+PAF  S+L  AF+IG++I++PFL IDL+++++L+AMGMMM+SP
Sbjct  126  PEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSP  185

Query  216  LIISLPFKIMLFVLVDGWALIIGTLASSFG  245
            + ISLPFK+++F+L +GW L ++ L  SF+
Sbjct  186  MTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

192) hrcR in NC_014500


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  134 bits (492),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 83/194 (43%), Positives = 144/194 (75%), Gaps = 3/194 (1%)

Query  13   LFLGALSLIPLMMIVCTCFLKVSMVLMITRNAIGVQQVPPNMALYGIALAATLFVMAPVF  72
            LFL  LS++PL++++ T FLK+++V+ I RNA+G+QQVPPN+ALYG+AL  +LF+M+P +
Sbjct  14   LFL--LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTL  71

Query  73   SDIKQRFQDAPVDFSSLDALESSVTKGIEPLQKFMSRNTDPDILTHLHENSLRMWPASMS  132
              +K+R +   V  +++ + E   +K++ P ++F+ +N++      +++   R WP  + 
Sbjct  72   LAVKERWHPVQVAGAPFWTSEWD-SKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIK  130

Query  133  EKITTQNILLVLPAYVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPTTlsl  192
             KI  +++L+++PA+ +S+L  +F+IG+LIY+PF+ IDL++SN+LLA+GM MV+P T+SL
Sbjct  131  RKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISL  190

Query  193  plklllfvlVNGWT  206
            P+KLL+F+L  GW 
Sbjct  191  PFKLLIFLLAGGWD  204

193) fliP in NC_010172


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  134 bits (493),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 87/210 (42%), Positives = 148/210 (71%), Gaps = 9/210 (4%)

Query  56   IQLVALLTVLSLAPGLLVMVTSFTRFAVAFSFLRSGLGLQSTPANLFLVSLALFMTFYVM  115
            +QL+++L +LS+ P ++VM TSF ++AV FS+LR++LG+Q  P+N+ L ++AL +++++M
Sbjct  8    LQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIM  67

Query  116  APTF---DRAWNEGVKPLQENRISEEEAFGKIVDPFREFMTQHVRPKDLQTFTDLASRTF  172
            +PT+      W+    +    + SE +  +K + P+R+F+ ++   K+ + F +L  RT 
Sbjct  68   GPTLLAVKERWHPVQVAGAPFWTSEWD--SKALAPYRQFLQKNSEEKEANYFRNLIKRTW  125

Query  173  PKAEAGEKI---DLRILIPAFMISELRRGFEIGFLIVLPFLVIDIIVSTIVMSMGMMMLP  229
            P  +   KI    L ILIPAF +S+L ++F IG+LI LPFL ID+++S I+++MGMMM++
Sbjct  126  P-EDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVS  184

Query  230  PTVISLPFKVLFFILIDGWNLLVSGLVRSF  259
            P  ISLPFK+L+F+L +GW+L ++ LV+SF
Sbjct  185  PMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

194) MXAN_5647 in NC_008095


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  134 bits (492),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 90/223 (41%), Positives = 147/223 (66%), Gaps = 15/223 (6%)

Query  1    MSYAGSPLSMMGMLAVMSLLPFAVLMLTSFSKIAVVLSLARSAMGTQQAPPTIVLTGLAA  60
            MS ++SPL ++G+L ++S+LP+ ++M TSF K+AVV+S+ R+A+G QQ PP I L G+A 
Sbjct  1    MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  61   VLTGHIMAP----VMERMYDAGQVAYAEVASGSGAEMLSA--ASRVSEPLRAFLIKHGSA  114
            VL+  IM+P    V ER  ++ QVA        GA   ++   S+   P R FL K++  
Sbjct  61   VLSLFIMGPTLLAVKER-WHPVQVA--------GAPFWTSEWDSKALAPYRQFLQKNSEE  111

Query  115  EERARFVDLARELRPVEEMDAVRETDLFIVIPAFVITELKEAFQIGFLVFLPFLVLDMVI  174
             E   F +L +  +P +    ++   L+I+IPAF +++L +AF+IG+L++LPFL +D++I
Sbjct  112  KEANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLI  171

Query  175  ANVLLALGMQTLSPSQVSLPFKILLFVAVDGWSLLARGLILGY  217
            +N+LLA+GM  +SP  +SLPFK+L+F+  +GW L    L+ ++
Sbjct  172  SNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

195) fliP in NC_007005


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  134 bits (493),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 86/210 (41%), Positives = 147/210 (70%), Gaps = 7/210 (3%)

Query  45   SLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQAPSNQILTGMALFLTMFI  104
            +LQ++ I+  LS++P ++++ TSF ++ +VFSILR+ALG+QQ P+N  L G AL L++FI
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  105  MAPVFDRVNQDALQPYL--AEKLSAQDAVAKAQVPIKDFMLAQTRTSDLELFMRLSKRT-  161
            M+P +  V+ +  +P    +  + + +  +KA  P ++F+  ++   + + F  L KRT 
Sbjct  67   MGPTLLAVK-ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW  125

Query  162  --DIPTP-DAAPLTILVPAFVISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSP  218
              DI     + +L IL+PAF +S+L  AF+IG++I++PFL IDL+++++L+AMGMMM+SP
Sbjct  126  PEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSP  185

Query  219  LIISLPFKIMLFVLVDGWALIVGTLAGSFG  248
            + ISLPFK+++F+L +GW L ++ L  SF+
Sbjct  186  MTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

196) fliP in NC_005773


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  134 bits (492),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 86/210 (41%), Positives = 147/210 (70%), Gaps = 7/210 (3%)

Query  45   SLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFI  104
            +LQ++ I+  LS++P ++++ TSF ++ +VFSILR+ALG+QQ P+N  L G AL L++FI
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  105  MAPVFDRVNQDALQPYL--AEKLSAQDAVAKAQVPIKDFMLAQTRTSDLELFMRLSKRT-  161
            M+P +  V+ +  +P    +  + + +  +KA  P ++F+  ++   + + F  L KRT 
Sbjct  67   MGPTLLAVK-ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW  125

Query  162  --DIPTP-DAAPLTILVPAFVISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSP  218
              DI     + +L IL+PAF +S+L  AF+IG++I++PFL IDL+++++L+AMGMMM+SP
Sbjct  126  PEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSP  185

Query  219  LIISLPFKIMLFVLVDGWALIVGTLAGSFG  248
            + ISLPFK+++F+L +GW L ++ L  SF+
Sbjct  186  MTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

197) C770_GR4pB210 in NC_019847


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  134 bits (491),  Expect = 5e-33, Method: Compositional matrix adjust.
 Identities = 85/203 (42%), Positives = 137/203 (68%), Gaps = 7/203 (3%)

Query  17   ISVLPVIAVVATSFTRISVVLLIVRNAIGIQQTPPNLLVFAIAIVLSAFVMNPVL---QS  73
            +S+LP+I V++TSF +++VV+ I+RNA+GIQQ PPN+ ++++A+VLS F+M P L   + 
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKE  76

Query  74   SWQLLILHGADFSTVGGMADGMVKVGAPLKEFMTKFSDEEVRGFFVEASQKIWVDAPTIP  133
             W+ + + GA F T    + ++    AP ++F+ K S+E    +F +  ++ W +     
Sbjct  77   RWHPVQVAGAPFWTSEWDSKAL----APYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRK  132

Query  134  IASDDVTILTPSFLVSELTRAFEAGFLIYLPFLMIDFAVSAILVALGMQMMSPTVVSTPI  193
            I +D + IL P+F VS+LT+AF  G+LIYLPFL ID+ +S IL+A+GM M+SP  +S P+
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  194  KLLLFVSIDGWRRLLEGLVLSYA  216
            KLL+F+  +GW   L  LV S++
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSFS  215

198) fliP in NC_020829


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  133 bits (487),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 87/210 (42%), Positives = 145/210 (70%), Gaps = 7/210 (3%)

Query  58   SLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLIGLALFLTLFV  117
            +LQ++ I+  LS++P ++++ TSF ++ +VFSILR+ALG+Q  P+N  L G+AL L+LF+
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  118  MAPVFDKINANALQPYLNEQIP--AQEAISRAEVPLKAFMLAQTRQSDLELFVRLSKRT-  174
            M+P +  ++    +P      P  + E  S+A  P + F+  ++ + + + F  L KRT 
Sbjct  67   MGPTLLAVKER-WHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW  125

Query  175  --DI-QSADATPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMMMLSP  231
              DI +   + +L IL+PAF  S+L  AF+IG++I++PFL IDL++S++L+AMGMMM+SP
Sbjct  126  PEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSP  185

Query  232  LIISLPFKIMLFVLVDGWALIIGTLAGSFG  261
            + ISLPFK+++F+L +GW L ++ L  SF+
Sbjct  186  MTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

199) fliP in NC_019670


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  133 bits (487),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 87/210 (42%), Positives = 147/210 (70%), Gaps = 7/210 (3%)

Query  45   SLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTLFI  104
            +LQ++ I+  LS++P ++++ TSF ++ +VFSILR+ALG+QQ P+N  L G AL L+LFI
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  105  MAPVFDRVNQ--DALQPYLAEKLTAQDAVAKAQVPIKNFMLAQTRTSDLELFMRLSKRT-  161
            M+P +  V++  +++Q   +  + + +  +KA  P ++F+  ++   + + F  L KRT 
Sbjct  67   MGPTLLAVKERWHPVQV-AGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW  125

Query  162  --DIATP-DQAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSP  218
              DI       +L IL+PAF  S+L  AF+IG++I++PFL IDL+++++L+AMGMMM+SP
Sbjct  126  PEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSP  185

Query  219  LIISLPFKIMLFVLVDGWALIIGTLASSFG  248
            + ISLPFK+++F+L +GW L ++ L  SF+
Sbjct  186  MTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

200) fliP in NC_010725


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  133 bits (487),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 85/210 (41%), Positives = 147/210 (70%), Gaps = 9/210 (4%)

Query  49   IQLVALLTVLSLAPGLLVMMTSFTRFAVAFSFLRSGLGLQSTPANLFLVSLALFMTFYVM  108
            +QL+++L +LS+ P ++VM TSF ++AV FS+LR++LG+Q  P+N+ L ++AL +++++M
Sbjct  8    LQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIM  67

Query  109  APTF---DRAWNEGVKPLQENRIGEEEAFGKIVEPFREFMTQHVRPKDLQTFTDLASRNF  165
            +PT+      W+    +    + +E +  +K + P+R+F+ ++   K+ + F +L  R  
Sbjct  68   GPTLLAVKERWHPVQVAGAPFWTSEWD--SKALAPYRQFLQKNSEEKEANYFRNLIKRTW  125

Query  166  PKAEAGEKI---DLRILIPAFMISELRRGFEIGFLIVLPFLVIDIIVSTIVMSMGMMMLP  222
            P  +   KI    L ILIPAF +S+L ++F IG+LI LPFL ID+++S I+++MGMMM++
Sbjct  126  P-EDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVS  184

Query  223  PTVISLPFKVLFFILIDGWNLLVSGLVRSF  252
            P  ISLPFK+L+F+L +GW+L ++ LV+SF
Sbjct  185  PMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

201) fliP in NC_007492


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  133 bits (489),  Expect = 7e-33, Method: Compositional matrix adjust.
 Identities = 88/214 (42%), Positives = 146/214 (69%), Gaps = 15/214 (7%)

Query  45   SLQILLIMTALSFIPAAVILMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTLFI  104
            +LQ++ I+  LS++P  +++ TSF ++ +VFSILR+ALG+QQ P+N  L G AL L+LFI
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  105  MAPVFDRVNN--DALQ----PYLAEKLTAQQAVEKAQVPIKDFMLAQTRSSDLELFVRLS  158
            M+P +  V++  +++Q    P+ +    +     KA  P ++F+  ++   + + F  L 
Sbjct  67   MGPTLLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLI  121

Query  159  KRT---DIATP-DAAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMM  214
            KRT   DI     + +L IL+PAF  S+L  AF+IG++I++PFL IDL+++++L+AMGMM
Sbjct  122  KRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMM  181

Query  215  MLSPLIISLPFKIMLFVLVDGWALIIGTLASSFG  248
            M+SP+ ISLPFK+++F+L +GW L ++ L  SF+
Sbjct  182  MVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

202) fliP in NC_004557


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  133 bits (488),  Expect = 9e-33, Method: Compositional matrix adjust.
 Identities = 86/203 (43%), Positives = 144/203 (71%), Gaps = 13/203 (6%)

Query  68   LSILPSFIVMMTSFVRISVVFGFLRNAMGTQQSPPNQVLVGLALFLTIFIMTPVYQIINK  127
            LSILP +IVM TSF++++VVF++LRNA+G QQ PPN  L G+AL L++FIM P    + K
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  128  EAIQPFVKSEINQEQAFETGSKPL---REFMLKQTREKDLKLFVEI------SNIDKNIT  178
            E  +P V+       + E +SK+L   R+F+ K++ EK+ + F ++       +I ++I 
Sbjct  76   ERWHP-VQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIK  134

Query  179  KENVPLYVVVPSFIISELKTAFQIGFLLYIPFLVIDLVVASVLMSMGMFMLPPVMVSLPF  238
             ++  L +++P+F +S+L  AF+IG+L+Y+PFL IDL+++++L++MGM M++P+ +SLPF
Sbjct  135  PDS--LLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  239  KLLLFVMVDGWHLLIKSLIMSFK  261
            KLL+F++ +GW+L +  L+ SF 
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSFS  215

203) fliP in NC_016002


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  133 bits (488),  Expect = 9e-33, Method: Compositional matrix adjust.
 Identities = 89/214 (42%), Positives = 144/214 (68%), Gaps = 15/214 (7%)

Query  41   SLSLQMLLFMTALSFIPALLLMMTSFTRIIIVLSLLRQAMGTMQAPPNQVLVGLALFLTL  100
            +L L  +LF+  LS++P +++M TSF ++ +V+S+LR+A+G  Q PPN  L G+AL L+L
Sbjct  7    PLQLIGILFL--LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSL  64

Query  101  FVMGPTFDQVYSKAWVPFSEDKIGF--AQMLEEGSKPMREFMLKQTREKDLAFFIEVSQS  158
            F+MGPT+  V  + W P       F  ++    +  P R+F+ K++ EK+  +F ++ + 
Sbjct  65   FIMGPTLLAVKER-WHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKR  123

Query  159  PAPPTPAEVSMKT-------LIPAFVISELKTAFQIGFMVFIPFLIIDLVVASILMAMGM  211
                 P ++  K        LIPAF +S+L  AF+IG+++++PFL IDL++++IL+AMGM
Sbjct  124  T---WPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  212  MMVSPVIISLPFKLMLFVLVDGWTLLMGSLVRSF  245
            MMVSP+ ISLPFKL++F+L +GW L ++ LV+SF
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

204) Dd1591_1885 in NC_012912


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  132 bits (485),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 82/194 (43%), Positives = 142/194 (74%), Gaps = 3/194 (1%)

Query  13   LFLGTLSLIPLSMIVCTCFLKISMVLMITRNAIGVQQVPPNMALYGIALAATVFVMAPVF  72
            LFL  LS++PL +++ T FLK+++V+ I RNA+G+QQVPPN+ALYG+AL  ++F+M+P +
Sbjct  14   LFL--LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTL  71

Query  73   SDIKQRFQDAPVDFSNLDALESSVTRGIEPLQKFMSRNTDPDILTHLHENSLRMWPAAMS  132
              +K+R +   V  + + + E   ++++ P ++F+ +N++      +++   R WP  + 
Sbjct  72   LAVKERWHPVQVAGAPFWTSEWD-SKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIK  130

Query  133  EKITTQSILLIVPAYVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPTTlsl  192
             KI  +S+L+++PA+ +S+L  +F+IG+LIY+PF+ IDL++SN+LLA+GM MV+P T+SL
Sbjct  131  RKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISL  190

Query  193  plklllfvlVNGWT  206
            P+KLL+F+L  GW 
Sbjct  191  PFKLLIFLLAGGWD  204

205) PSEBR_a1491 in NC_015379


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  132 bits (485),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 87/210 (42%), Positives = 147/210 (70%), Gaps = 7/210 (3%)

Query  44   SLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFI  103
            +LQ++ I+  LS++P ++++ TSF ++ +VFSILR+ALG+QQ P+N  L G AL L++FI
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  104  MAPVFDRVNQ--DALQPYLAEKITAQDAVAKAEVPIKDFMLAQTRSSDLELFMRLSKRT-  160
            M+P +  V++  +++Q   +  + + +  +KA  P ++F+  ++   + + F  L KRT 
Sbjct  67   MGPTLLAVKERWHPVQV-AGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW  125

Query  161  --DI-PSADQAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASILMAMGMMMLSP  217
              DI       +L IL+PAF  S+L  AF+IG++I++PFL IDL++++IL+AMGMMM+SP
Sbjct  126  PEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSP  185

Query  218  LIISLPFKIMLFVLVDGWALIIGTLAGSFG  247
            + ISLPFK+++F+L +GW L ++ L  SF+
Sbjct  186  MTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

206) fliP in NC_016830


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  132 bits (485),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 87/210 (42%), Positives = 147/210 (70%), Gaps = 7/210 (3%)

Query  44   SLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFI  103
            +LQ++ I+  LS++P ++++ TSF ++ +VFSILR+ALG+QQ P+N  L G AL L++FI
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  104  MAPVFDRVNQ--DALQPYLAEKITAQDAVAKAEVPIKDFMLAQTRSSDLELFMRLSKRT-  160
            M+P +  V++  +++Q   +  + + +  +KA  P ++F+  ++   + + F  L KRT 
Sbjct  67   MGPTLLAVKERWHPVQV-AGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW  125

Query  161  --DI-PSADQAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASILMAMGMMMLSP  217
              DI       +L IL+PAF  S+L  AF+IG++I++PFL IDL++++IL+AMGMMM+SP
Sbjct  126  PEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSP  185

Query  218  LIISLPFKIMLFVLVDGWALIIGTLAGSFG  247
            + ISLPFK+++F+L +GW L ++ L  SF+
Sbjct  186  MTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

207) fliP in NC_004578


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  132 bits (486),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 86/210 (41%), Positives = 147/210 (70%), Gaps = 7/210 (3%)

Query  45   SLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFI  104
            +LQ++ I+  LS++P ++++ TSF ++ +VFSILR+ALG+QQ P+N  L G AL L++FI
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  105  MAPVFDRVNQDALQPYL--AEKLTAQDAVAKAQVPIKDFMLAQTRTSDLELFMRLSKRT-  161
            M+P +  V+ +  +P    +  + + +  +KA  P ++F+  ++   + + F  L KRT 
Sbjct  67   MGPTLLAVK-ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW  125

Query  162  --DIPTP-DAAPLTILVPAFVISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSP  218
              DI     + +L IL+PAF +S+L  AF+IG++I++PFL IDL+++++L+AMGMMM+SP
Sbjct  126  PEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSP  185

Query  219  LIISLPFKIMLFVLVDGWALIVGTLAGSFG  248
            + ISLPFK+++F+L +GW L ++ L  SF+
Sbjct  186  MTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

208) B488_02070 in NC_019907


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  132 bits (485),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 82/204 (41%), Positives = 145/204 (72%), Gaps = 5/204 (2%)

Query  33   GVLTVLSIIPVILVMVTSFPRFIIVFSILRIGIGLTSTPSNIIMISLALFMTFYVMSPTL  92
            G+L +LSI+P+I+VM TSF ++ +VFSILR ++G+   P+NI + ++AL +++++M+PTL
Sbjct  12   GILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTL  71

Query  93   DHAMKEGIHPL--IENKITESEAIQRIGEPFHKFMKDNTRDKDLQLFINMAREK--GNSV  148
              A+KE  HP+      +  SE   +   P+++F++ N+ +K+ + F N+ +     +  
Sbjct  72   -LAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIK  130

Query  149  QGVDHVEYRVLIPAFMISEIRRGFEMGFLIVLPFLIIDMIVSAIIMAMGMMMLPPTSISL  208
            + +      +LIPAF +S++ ++F +G+LI LPFL ID+++S I++AMGMMM++P +ISL
Sbjct  131  RKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISL  190

Query  209  PFKLIFFVLIDGWNLLVGSLVRSF  232
            PFKL++F+L +GW+L ++ LV+SF
Sbjct  191  PFKLLIFLLAGGWDLTLAQLVQSF  214

209) fliP in NC_012988


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  132 bits (484),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 86/210 (41%), Positives = 148/210 (71%), Gaps = 9/210 (4%)

Query  56   IQLVALLTVLSLAPGLLVMVTSFTRFAVALSFLRSGLGLQSTPANLFLVSLALFMTFYVM  115
            +QL+++L +LS+ P ++VM TSF ++AV +S+LR++LG+Q  P+N+ L ++AL +++++M
Sbjct  8    LQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIM  67

Query  116  APTF---DRAWNEGVKPLQENRISEEEAFGKIVDPFREFMTQHVRPKDLQTFTDLASRTF  172
            +PT+      W+    +    + SE +  +K + P+R+F+ ++   K+ + F +L  RT 
Sbjct  68   GPTLLAVKERWHPVQVAGAPFWTSEWD--SKALAPYRQFLQKNSEEKEANYFRNLIKRTW  125

Query  173  PKAEAGEKI---DLRILIPAFMISELRRGFEIGFLIVLPFLVIDIIVSTIVMSMGMMMLP  229
            P  +   KI    L ILIPAF +S+L ++F IG+LI LPFL ID+++S I+++MGMMM++
Sbjct  126  P-EDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVS  184

Query  230  PTVISLPFKVLFFILIDGWNLLVSGLVRSF  259
            P  ISLPFK+L+F+L +GW+L ++ LV+SF
Sbjct  185  PMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

210) fliP in NC_021237


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  132 bits (485),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 86/210 (41%), Positives = 147/210 (70%), Gaps = 7/210 (3%)

Query  44   SLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFI  103
            +LQ++ I+  LS++P ++++ TSF ++ +VFSILR+ALG+QQ P+N  L G AL L++FI
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  104  MAPVFDRVNQ--DALQPYLAEKLTAQDAVAKAQVPIKDFMLAQTRSSDLELFMRLSKRT-  160
            M+P +  V++  +++Q   +  + + +  +KA  P ++F+  ++   + + F  L KRT 
Sbjct  67   MGPTLLAVKERWHPVQV-AGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW  125

Query  161  --DIASP-DQAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSP  217
              DI       +L IL+PAF  S+L  AF+IG++I++PFL IDL+++++L+AMGMMM+SP
Sbjct  126  PEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSP  185

Query  218  LIISLPFKIMLFVLVDGWALIIGTLAGSFG  247
            + ISLPFK+++F+L +GW L ++ L  SF+
Sbjct  186  MTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

211) fliP in NC_004129


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  132 bits (485),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 86/210 (41%), Positives = 147/210 (70%), Gaps = 7/210 (3%)

Query  44   SLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFI  103
            +LQ++ I+  LS++P ++++ TSF ++ +VFSILR+ALG+QQ P+N  L G AL L++FI
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  104  MAPVFDRVNQ--DALQPYLAEKLTAQDAVAKAQVPIKDFMLAQTRSSDLELFMRLSKRT-  160
            M+P +  V++  +++Q   +  + + +  +KA  P ++F+  ++   + + F  L KRT 
Sbjct  67   MGPTLLAVKERWHPVQV-AGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW  125

Query  161  --DIASP-DQAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSP  217
              DI       +L IL+PAF  S+L  AF+IG++I++PFL IDL+++++L+AMGMMM+SP
Sbjct  126  PEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSP  185

Query  218  LIISLPFKIMLFVLVDGWALIIGTLAGSFG  247
            + ISLPFK+++F+L +GW L ++ L  SF+
Sbjct  186  MTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

212) Psefu_1935 in NC_015556


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  132 bits (484),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 86/214 (41%), Positives = 149/214 (70%), Gaps = 15/214 (7%)

Query  56   SLQILLIMTALSFIPAFLMLMTSFTRIIIVFSILRQALGLQQTPSNQILIGLALFLTMFI  115
            +LQ++ I+  LS++P ++++ TSF ++ +VFSILR+ALG+QQ P+N  L G+AL L++FI
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  116  MAPVFDQIN--REALQ----PYLNQQLPAQQAIERAEVPIKNFMLAQTRESDLELFVRLS  169
            M+P +  ++  ++++Q    P+   +  +     +A  P ++F+  ++ E + + F  L 
Sbjct  67   MGPTLLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLI  121

Query  170  KRT---DIATP-EAAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASILMAMGMM  225
            KRT   DI     + +L IL+PAF  S+L  AF+IG++I++PFL ID+++++IL+AMGMM
Sbjct  122  KRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMM  181

Query  226  MLSPLIISLPFKIMLFVLIDGWALIMGTLASSFG  259
            M+SP+ ISLPFK+++F+L +GW L ++ L  SF+
Sbjct  182  MVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

213) YSA_08109 in NC_017986


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  132 bits (483),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 86/214 (41%), Positives = 148/214 (70%), Gaps = 15/214 (7%)

Query  46   SLQILLIMTALSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQLLNGMALFLTMFI  105
            +LQ++ I+  LS++P ++++ TSF ++ +VFSILR+ALG+QQ P+N  L G AL L++FI
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  106  MAPVFERVNQ--DALQ----PYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDLDLFMRLS  159
            M+P +  V++  +++Q    P+   +  +     KA +P ++F+  ++ + + + F  L 
Sbjct  67   MGPTLLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLI  121

Query  160  KRT---DIAGP-DQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMM  215
            KRT   DI       +L IL+PAF  S+L  AF+IG++I++PFL ID++++++L+AMGMM
Sbjct  122  KRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMM  181

Query  216  MLSPLIISLPFKIMLFVLVDGWALIMGTLASSFG  249
            M+SP+ ISLPFK+++F+L +GW L ++ L  SF+
Sbjct  182  MVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

214) fliP in NC_009512


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  132 bits (483),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 86/214 (41%), Positives = 148/214 (70%), Gaps = 15/214 (7%)

Query  46   SLQILLIMTALSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQLLNGMALFLTMFI  105
            +LQ++ I+  LS++P ++++ TSF ++ +VFSILR+ALG+QQ P+N  L G AL L++FI
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  106  MAPVFERVNQ--DALQ----PYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDLDLFMRLS  159
            M+P +  V++  +++Q    P+   +  +     KA +P ++F+  ++ + + + F  L 
Sbjct  67   MGPTLLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLI  121

Query  160  KRT---DIAGP-DQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMM  215
            KRT   DI       +L IL+PAF  S+L  AF+IG++I++PFL ID++++++L+AMGMM
Sbjct  122  KRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMM  181

Query  216  MLSPLIISLPFKIMLFVLVDGWALIMGTLASSFG  249
            M+SP+ ISLPFK+++F+L +GW L ++ L  SF+
Sbjct  182  MVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

215) fliP in NC_010501


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  132 bits (483),  Expect = 2e-32, Method: Compositional matrix adjust.
 Identities = 86/214 (41%), Positives = 148/214 (70%), Gaps = 15/214 (7%)

Query  50   SLQILLIMTALSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQVLTGMALFLTMFI  109
            +LQ++ I+  LS++P ++++ TSF ++ +VFSILR+ALG+QQ P+N  L G AL L++FI
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  110  MAPVFDRVNQ--DALQ----PYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDLDLFMRLS  163
            M+P +  V++  +++Q    P+   +  +     KA +P ++F+  ++ + + + F  L 
Sbjct  67   MGPTLLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLI  121

Query  164  KRT---DIAGP-DQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMM  219
            KRT   DI       +L IL+PAF  S+L  AF+IG++I++PFL ID++++++L+AMGMM
Sbjct  122  KRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMM  181

Query  220  MLSPLIISLPFKIMLFVLVDGWALIMGTLAGSFG  253
            M+SP+ ISLPFK+++F+L +GW L ++ L  SF+
Sbjct  182  MVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

216) TOPB45_1333 in NC_015682


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  131 bits (481),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 83/191 (44%), Positives = 132/191 (70%), Gaps = 15/191 (7%)

Query  51   SFTRLIVVFSILRHAIGTAQTPPNQVLISLALFLTFFIMAPTF---KEAYESALV---PY  104
            SF +L VVFSILR+A+G  Q PPN  L ++AL L++FIM+PT+   KE  ++  V   P+
Sbjct  29   SFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAPF  88

Query  105  LNKKIDEKEMFKRASKPFKEFMFKNTREKDLALFIKL----RNEERPRTPEDVSIFTLIP  160
                 D K +      P+++F+ KN+ EK+   F +L    + E+  R     S++ LIP
Sbjct  89   WTSEWDSKAL-----APYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143

Query  161  AFMISELKTAFQIGFLLYIPFLVIDMVVSSVLISMGILMLPPMMISLPIKLLLFVLVDGW  220
            AF +S+L  AF+IG+L+Y+PFL ID+++S++L++MG++M++PM ISLP+KLL+F+L +GW
Sbjct  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203

Query  221  NLLVGSLVKSF  231
            +L ++ LV+SF
Sbjct  204  DLTLAQLVQSF  214

217) hrcR in NC_010996


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  131 bits (482),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 84/203 (42%), Positives = 139/203 (69%), Gaps = 7/203 (3%)

Query  17   ISMLPVIAVIATSFTKISVVLLIVRNAIGIQQTPPNLLVFAIAIVLSAFVMNPVL---QN  73
            +S+LP+I V++TSF K++VV+ I+RNA+GIQQ PPN+ ++++A+VLS F+M P L   ++
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKE  76

Query  74   SWQLLLAHSGDFGTVSGMADGMIKVAAPLKDFMLKFSDAEVRDFFVQASQKIWANAPATS  133
             W+ +   ++ F T    ++   K  AP ++F+ K S+    ++F +  ++ W++     
Sbjct  77   RWHPVQVAGAPFWT----SEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRK  132

Query  134  IASDDITVLTPSFLVSELTRAFEIGFLIYLPFLMIDFAVSAILVALGMQMMSPTVVSTPL  193
            I +D + +L P+F VS+LT+AF IG+LIYLPFL ID+ +S IL+A+GM M+SP  +S P+
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  194  KLLLFVSIDGWRRLLEGLVLSYA  216
            KLL+F+  +GW   L  LV S++
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSFS  215

218) Daud_1753 in NC_010424


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  131 bits (482),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 90/224 (41%), Positives = 150/224 (67%), Gaps = 24/224 (10%)

Query  49   PESPAEVVSSVRLLLFLTVISLLPAFLVMVTSFTRIVVVLAFLRAGLGIYQAPPGSVLIG  108
            P+SP ++++    +LFL  +S+LP ++VM TSF ++ VV+++LR +LGI Q PP   L G
Sbjct  4    PDSPLQLIG----ILFL--LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYG  57

Query  109  LALFLTVFIMAPVYAQVNEQ------AIEPFLRGEIDQVEAQERAAGPLREFMLRHTREK  162
            +AL L++FIM+P    V+E+      A  PF  +E D      +A +P R+F+ +++ EK
Sbjct  58   FALVLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWD-----SKALAPYRQFLQKNSEEK  112

Query  163  DLDLF------VRMAEIENPVPNELPLTVVIPAFIISELKTAFTMGFMLYLPFLIIDMVV  216
            + + F       +  +I   +  + +L ++IPAF +S+L  AF +G+++YLPFL ID+++
Sbjct  113  EANYFRNLIKRTWPEDIKRKIKPD-SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLI  171

Query  217  ASILLSMGMFMLPPVMISLPFKLLLFVLVDGWYLVVRSLVESFA  260
            ++ILL+MGM M++P+ ISLPFKLL+F+L +GW L +  LV+SF+
Sbjct  172  SNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

219) fliP in NC_020209


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  131 bits (482),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 86/214 (41%), Positives = 146/214 (69%), Gaps = 15/214 (7%)

Query  42   SLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFI  101
            +LQ++ I+  LS++P ++++ TSF ++ +VFSILR+ALG+QQ P+N  L G AL L++FI
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  102  MAPVFDKVNQ--QALQ----PYLAETITPQVAIDRAQGPIKDFMLSQTRSSDLELFVRLS  155
            M+P +  V++  +++Q    P+ +          +A +P ++F+  ++   + + F  L 
Sbjct  67   MGPTLLAVKERWHPVQVAGAPFWTSEWD-----SKALAPYRQFLQKNSEEKEANYFRNLI  121

Query  156  KRT---DIATP-DQAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMM  211
            KRT   DI       +L IL+PAF  S+L  AF+IG++I++PFL IDL+++++L+AMGMM
Sbjct  122  KRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMM  181

Query  212  MLSPLIISLPFKIMLFVLVDGWALIIGTLAGSFG  245
            M+SP+ ISLPFK+++F+L +GW L ++ L  SF+
Sbjct  182  MVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

220) fliP in NC_017530


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  131 bits (480),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 86/214 (41%), Positives = 148/214 (70%), Gaps = 15/214 (7%)

Query  46   SLQILLIMTALSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQLLTGMALFLTMFI  105
            +LQ++ I+  LS++P ++++ TSF ++ +VFSILR+ALG+QQ P+N  L G AL L++FI
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  106  MAPVFDRVNQ--DALQ----PYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDLDLFMRLS  159
            M+P +  V++  +++Q    P+   +  +     KA +P ++F+  ++ + + + F  L 
Sbjct  67   MGPTLLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLI  121

Query  160  KRT---DIAGP-DQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMM  215
            KRT   DI       +L IL+PAF  S+L  AF+IG++I++PFL ID++++++L+AMGMM
Sbjct  122  KRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMM  181

Query  216  MLSPLIISLPFKIMLFVLVDGWALIMGTLASSFG  249
            M+SP+ ISLPFK+++F+L +GW L ++ L  SF+
Sbjct  182  MVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

221) fliP in NC_018220


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  131 bits (480),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 86/214 (41%), Positives = 148/214 (70%), Gaps = 15/214 (7%)

Query  46   SLQILLIMTALSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQLLTGMALFLTMFI  105
            +LQ++ I+  LS++P ++++ TSF ++ +VFSILR+ALG+QQ P+N  L G AL L++FI
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  106  MAPVFDRVNQ--DALQ----PYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDLDLFMRLS  159
            M+P +  V++  +++Q    P+   +  +     KA +P ++F+  ++ + + + F  L 
Sbjct  67   MGPTLLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLI  121

Query  160  KRT---DIAGP-DQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMM  215
            KRT   DI       +L IL+PAF  S+L  AF+IG++I++PFL ID++++++L+AMGMM
Sbjct  122  KRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMM  181

Query  216  MLSPLIISLPFKIMLFVLVDGWALIMGTLASSFG  249
            M+SP+ ISLPFK+++F+L +GW L ++ L  SF+
Sbjct  182  MVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

222) fliP in NC_010322


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  131 bits (481),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 86/214 (41%), Positives = 148/214 (70%), Gaps = 15/214 (7%)

Query  46   SLQILLIMTALSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQLLTGMALFLTMFI  105
            +LQ++ I+  LS++P ++++ TSF ++ +VFSILR+ALG+QQ P+N  L G AL L++FI
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  106  MAPVFDRVNQ--DALQ----PYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDLDLFMRLS  159
            M+P +  V++  +++Q    P+   +  +     KA +P ++F+  ++ + + + F  L 
Sbjct  67   MGPTLLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLI  121

Query  160  KRT---DIAGP-DQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMM  215
            KRT   DI       +L IL+PAF  S+L  AF+IG++I++PFL ID++++++L+AMGMM
Sbjct  122  KRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMM  181

Query  216  MLSPLIISLPFKIMLFVLVDGWALIMGTLASSFG  249
            M+SP+ ISLPFK+++F+L +GW L ++ L  SF+
Sbjct  182  MVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

223) L483_24060 in NC_021491


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  131 bits (481),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 86/214 (41%), Positives = 147/214 (69%), Gaps = 15/214 (7%)

Query  46   SLQILLIMTALSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFI  105
            +LQ++ I+  LS++P ++++ TSF ++ +VFSILR+ALG+QQ P+N  L G AL L++FI
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  106  MAPVFDRVNQ--DALQ----PYLKEQMTAQQAIDKAQVPLKDFMLAQTRQSDLDLFMRLS  159
            M+P +  V++  +++Q    P+   +  +     KA  P ++F+  ++ + + + F  L 
Sbjct  67   MGPTLLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLI  121

Query  160  KRT---DIAGP-DQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMM  215
            KRT   DI       +L IL+PAF  S+L  AF+IG++I++PFL ID++++++L+AMGMM
Sbjct  122  KRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMM  181

Query  216  MLSPLIISLPFKIMLFVLVDGWALIMGTLASSFG  249
            M+SP+ ISLPFK+++F+L +GW L ++ L  SF+
Sbjct  182  MVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

224) fliP in NC_019905


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  131 bits (481),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 86/214 (41%), Positives = 148/214 (70%), Gaps = 15/214 (7%)

Query  46   SLQILLIMTALSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQLLTGMALFLTMFI  105
            +LQ++ I+  LS++P ++++ TSF ++ +VFSILR+ALG+QQ P+N  L G AL L++FI
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  106  MAPVFDRVNQ--DALQ----PYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDLDLFMRLS  159
            M+P +  V++  +++Q    P+   +  +     KA +P ++F+  ++ + + + F  L 
Sbjct  67   MGPTLLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLI  121

Query  160  KRT---DIAGP-DQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMM  215
            KRT   DI       +L IL+PAF  S+L  AF+IG++I++PFL ID++++++L+AMGMM
Sbjct  122  KRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMM  181

Query  216  MLSPLIISLPFKIMLFVLVDGWALIMGTLASSFG  249
            M+SP+ ISLPFK+++F+L +GW L ++ L  SF+
Sbjct  182  MVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

225) fliP in NC_002947


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  131 bits (480),  Expect = 3e-32, Method: Compositional matrix adjust.
 Identities = 86/214 (41%), Positives = 148/214 (70%), Gaps = 15/214 (7%)

Query  46   SLQILLIMTALSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQLLTGMALFLTMFI  105
            +LQ++ I+  LS++P ++++ TSF ++ +VFSILR+ALG+QQ P+N  L G AL L++FI
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  106  MAPVFDRVNQ--DALQ----PYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDLDLFMRLS  159
            M+P +  V++  +++Q    P+   +  +     KA +P ++F+  ++ + + + F  L 
Sbjct  67   MGPTLLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLI  121

Query  160  KRT---DIAGP-DQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMM  215
            KRT   DI       +L IL+PAF  S+L  AF+IG++I++PFL ID++++++L+AMGMM
Sbjct  122  KRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMM  181

Query  216  MLSPLIISLPFKIMLFVLVDGWALIMGTLASSFG  249
            M+SP+ ISLPFK+++F+L +GW L ++ L  SF+
Sbjct  182  MVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

226) RHE_PD00059 in NC_004041


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  131 bits (479),  Expect = 4e-32, Method: Compositional matrix adjust.
 Identities = 84/203 (42%), Positives = 139/203 (69%), Gaps = 7/203 (3%)

Query  17   ISMLPVIAVIATSFTKISVVLLIVRNAIGIQQTPPNLLVFAIAIVLSAFVMNPVL---QN  73
            +S+LP+I V++TSF K++VV+ I+RNA+GIQQ PPN+ ++++A+VLS F+M P L   ++
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKE  76

Query  74   SWQLLLAHSGDFGTVSGMADGMIKVAAPLKDFMLKFSDAEVRDFFVQASQKIWANAPATP  133
             W+ +   ++ F T    ++   K  AP ++F+ K S+    ++F +  ++ W++     
Sbjct  77   RWHPVQVAGAPFWT----SEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRK  132

Query  134  IASDDITVLTPSFLVSELTRAFEIGFLIYLPFLMIDFAVSAILVALGMQMMSPTVVSTPL  193
            I +D + +L P+F VS+LT+AF IG+LIYLPFL ID+ +S IL+A+GM M+SP  +S P+
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  194  KLLLFVSIDGWRRLLEGLVLSYA  216
            KLL+F+  +GW   L  LV S++
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSFS  215

227) PPS_3758 in NC_015733


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  131 bits (480),  Expect = 4e-32, Method: Compositional matrix adjust.
 Identities = 86/214 (41%), Positives = 148/214 (70%), Gaps = 15/214 (7%)

Query  47   SLQILLIMTALSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQLLTGMALFLTMFI  106
            +LQ++ I+  LS++P ++++ TSF ++ +VFSILR+ALG+QQ P+N  L G AL L++FI
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  107  MAPVFDRVNQ--DALQ----PYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDLDLFMRLS  160
            M+P +  V++  +++Q    P+   +  +     KA +P ++F+  ++ + + + F  L 
Sbjct  67   MGPTLLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLI  121

Query  161  KRT---DIAGP-DQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMM  216
            KRT   DI       +L IL+PAF  S+L  AF+IG++I++PFL ID++++++L+AMGMM
Sbjct  122  KRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMM  181

Query  217  MLSPLIISLPFKIMLFVLVDGWALIMGTLASSFG  250
            M+SP+ ISLPFK+++F+L +GW L ++ L  SF+
Sbjct  182  MVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

228) Dalk_1007 in NC_011768


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  131 bits (479),  Expect = 5e-32, Method: Compositional matrix adjust.
 Identities = 84/194 (44%), Positives = 133/194 (69%), Gaps = 17/194 (8%)

Query  72   TSFTRLAVVFSFLRHALGTQQMPPNQVMVGLALFLTVFIMMPV-------WKDINTNALQ  124
            TSF +LAVVFS+LR+ALG QQ+PPN  + G+AL L++FIM P        W  ++  +  
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAG-A  86

Query  125  PYLNEEIGDQEAIEKAVTPLREFMFRHTREKDLALFVKISGEAKPNSPKD----VTIWTL  180
            P+   E +      KA++P R+F+ +++ EK+   F ++   + P+  K      ++  L
Sbjct  87   PFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLIL  141

Query  181  IPAFVISELTTAFMIGFIIYVPFLIIDMVVASVLLSMGMMMLPPVMISLPFKLMLFVLVD  240
            IPAF +S+LT AF IG++IY+PFL ID++++++LL+MGMMM++P+ ISLPFKL++F+L +
Sbjct  142  IPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAG  201

Query  241  GWSLIVGSLVQSFA  254
            GW L ++ LVQSF+
Sbjct  202  GWDLTLAQLVQSFS  215

229) fliP in NC_009439


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  131 bits (479),  Expect = 5e-32, Method: Compositional matrix adjust.
 Identities = 87/214 (41%), Positives = 145/214 (68%), Gaps = 15/214 (7%)

Query  56   SLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILVGLALFLTLFI  115
            +LQ++ I+  LS++P ++++ TSF ++ +VFSILR+ALG+QQ P+N  L G+AL L+LFI
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  116  MAPIF----DRINTDALQ--PYLNEEIVAQEALTRAEGPIRDFMLAQTRESDLALFVRLS  169
            M+P +    +R +   +   P+   E       ++A +P R+F+  ++ E +   F  L 
Sbjct  67   MGPTLLAVKERWHPVQVAGAPFWTSEWD-----SKALAPYRQFLQKNSEEKEANYFRNLI  121

Query  170  KRTDLAGVEDV----PLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASILMAMGMM  225
            KRT   ++       +L IL+PAF  S+L  AF+IG++I++PFL ID+++++IL+AMGMM
Sbjct  122  KRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMM  181

Query  226  MLSPLIISLPFKIMLFVLVDGWALIMGTLAASFG  259
            M+SP+ ISLPFK+++F+L +GW L ++ L  SF+
Sbjct  182  MVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

230) Ser39006_2919 in NC_022268


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  130 bits (476),  Expect = 7e-32, Method: Compositional matrix adjust.
 Identities = 82/195 (43%), Positives = 146/195 (75%), Gaps = 5/195 (2%)

Query  13   LFLGALSLIPMMMIVCTCFLKIAMVLIITRNAIGVQQVPPNMALYGIALASTLFIMAPVF  72
            LFL  LS++P+++++ T FLK+A+V+ I RNA+G+QQVPPN+ALYG+AL  +LFIM+P +
Sbjct  14   LFL--LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTL  71

Query  73   NDIRQQFQDTPLDLNSIETLETTLGS-GITPLQKFMSRNSDPDILVHLHENSIRMWPASM  131
              ++++ +  P+++ +     +  +S +++P ++F+ +NS+      +++   R WP  +
Sbjct  72   LAVKERWH--PVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDI  129

Query  132  SEKVNTQNILLVIPAFVLSELQAGFKIGFLVYIPFIVIDLIVSNVLLALGMQMVAPTTls  191
              K++ +++L++IPAF +S+L  +F+IG+L+Y+PF+ IDL++SN+LLA+GM MV+P T+S
Sbjct  130  KRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTIS  189

Query  192  lplklllfilVNGWT  206
            LP+KLL+F+L  GW 
Sbjct  190  LPFKLLIFLLAGGWD  204

231) H650_14845 in NC_021500


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  130 bits (476),  Expect = 7e-32, Method: Compositional matrix adjust.
 Identities = 74/184 (41%), Positives = 132/184 (72%), Gaps = 5/184 (2%)

Query  25   MIISTSFLKISVVLLIVRNALGIQQVPGNMVIYSISLAATLFIMGPVFNDMTQRVRQISP  84
            ++++TSFLK++VV+ I+RNALGIQQVP N+ +Y+++L  +LFIMGP +  + +R ++  P
Sbjct  24   IVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKER-WH--P  80

Query  85   DKIDVAAIYAHY--PTVIAPLQNFLQRNIDADTHVRLTEAAKKLWKDQANNPITRDNPAL  142
             ++  A++ +    +  +AP ++FLQ+N +      + +  K+ W ++ +  I  D+  +
Sbjct  81   VQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLI  140

Query  143  ILSAFVLSELQSGFKIGFLIYIPFLVIDLVVSTVLMALGMQMVAPMFIAIPLKLLLFVLI  202
            +++AF +S+L  +F+IG+LIY+PFL IDL++S +L+A+GM MV+PM I++P+KLL+F+L 
Sbjct  141  LIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLA  200

Query  203  EGWS  206
             GW 
Sbjct  201  GGWD  204

232) MDS_1862 in NC_015410


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  130 bits (476),  Expect = 8e-32, Method: Compositional matrix adjust.
 Identities = 85/210 (41%), Positives = 146/210 (70%), Gaps = 7/210 (3%)

Query  56   SLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILVGLALFLTMFI  115
            +LQ++ I+  LS++P ++++ TSF ++ +VFSILR+ALG+QQ P+N  L G+AL L++FI
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  116  MAPVFDRINTDALQPYL--NEEIIAQEALTRAEGPIRDFMLAQTRESDLALFVRLSKRTD  173
            M+P +  ++ +  +P       + + E  ++A +P R+F+  ++ E +   F  L KRT 
Sbjct  67   MGPTLLAVK-ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW  125

Query  174  LAGVEDV----PLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASILMAMGMMMLSP  229
              ++       +L IL+PAF  S+L  AF+IG++I++PFL ID+++++IL+AMGMMM+SP
Sbjct  126  PEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSP  185

Query  230  LIISLPFKIMLFVLVDGWALIMGTLAASFG  259
            + ISLPFK+++F+L +GW L ++ L  SF+
Sbjct  186  MTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

233) Cwoe_0066 in NC_013739


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  129 bits (473),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 78/189 (42%), Positives = 131/189 (70%), Gaps = 6/189 (3%)

Query  30   TGFTRILIVLGFIRTAIGTPTAPPNQVLVGIALFLTLFVMAPTFTQIKETAWDPLE--AG  87
            T+F ++ +V++++R A+G    PPN  L G+AL L+LF+M+PT+  +KE  W+P++  ++
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKER-WHPVQVAGA  86

Query  88   RINTAQAVRRAEEPLRQFMFEQTRTKDLALFVRL-SRTREQPRTRADIPTT--VLIPAFI  144
             + T++   +A  P RQF+  ++  K+   F  L  RT+ +   R   P +  +LIPAF 
Sbjct  87   PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFT  146

Query  145  VSELKTAFQIGFMIFLPFLVIDLIVASTLMSMGMIMLPPVFISLPFKILLFVLVDGWALI  204
            VS+L  AF+IG++I+LPFL IDL++++ L++MGM+M++P+ ISLPFK+L+F+L +GW L 
Sbjct  147  VSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLT  206

Query  205  TDSLVRSFN  213
               LV+SF+
Sbjct  207  LAQLVQSFS  215

234) JCM7686_1775 in NC_022041


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  129 bits (473),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 86/206 (42%), Positives = 138/206 (67%), Gaps = 14/206 (6%)

Query  14   LMVVPFIVVSLTAFVKIAVVLFLVRSALGVQQTPPNLVLYGVTIVLTGYVMSPVLAASFA  73
            L ++P+I+V  T+F+K+AVV+ ++R+ALG+QQ PPN+ LYG ++VL+ ++M+P L A   
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  74   EMTNGGQMDALP-PPSEWPGLIQRGLGPVREFLMRFTTPVDRAFFLSA-----AEEMHKT  127
            E  +  Q+ + P   SEW +   ++L+P R+FL + +   +  +F +      +E++ + 
Sbjct  76   ERWHPVQVAGAPFWTSEWDS---KALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRK  132

Query  128  SGVVPSEQDLFILAPAFVTAELTRAFEIGVMLYLPFIVVDLVITNILTAMGMMMVSPTVI  187
                   + L+IL PAF  ++LT+AF IG+++YLPF+ +DL+I+NIL AMGMMMVSP  I
Sbjct  133  I----KPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTI  188

Query  188  SLPFKLLLFVAVDGWARLTHGLVMSY  213
            SLPFKLL+F+  +GW      LV S+
Sbjct  189  SLPFKLLIFLLAGGWDLTLAQLVQSF  214

235) Pmen_0046 in NC_009439


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  129 bits (471),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 85/195 (44%), Positives = 143/195 (74%), Gaps = 5/195 (2%)

Query  13   LFLGALSLIPFLLIVCTAFLKIAMTLMITRNAIGVQQVPPNMAIYGIALAATMFVMAPVA  72
            LFL  LS++P+++++ T+FLK+A+ + I RNA+G+QQVPPN+A+YG+AL  ++F+M+P  
Sbjct  14   LFL--LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTL  71

Query  73   YEIQNRLSDNPLDLSSTD-SLQASAGNVVEPLQDFMVNNTDPDIATHLLENTQRMWPREM  131
              +++R   +P++++++        ++ + P ++F+ +N++   A  + +  +R WP ++
Sbjct  72   LAVKERW--HPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDI  129

Query  132  SEKASKSDLLLAIPAFVLSELQAAFQIGFLIYIPFIVIDLIISNLLLALGMQMVSPMTIS  191
              K     LL+ IPAF +S+L  AF+IG+LIY+PF+ IDL+ISN+LLA+GM MVSPMTIS
Sbjct  130  KRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTIS  189

Query  192  lplklllfvlVDGWT  206
            LP+KLL+F+L +GW 
Sbjct  190  LPFKLLIFLLAGGWD  204

236) Deba_2315 in NC_014365


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  129 bits (471),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 79/190 (42%), Positives = 130/190 (69%), Gaps = 5/190 (2%)

Query  74   MTTSFVRIAVSFSLLRNALGAPQVPPTQIIVGLSLFLTFFIMAPVFDQVHDKALKPYLDG  133
            M TSF+++AV FS+LRNALG  QVPP   + G++L L++FIM+P +  V ++     + G
Sbjct  26   MGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAG  85

Query  134  A-ISQSAFFEEAAKPMREFMLKQTRKKDLGLFMKIAGEDRP----RNEQDVTMSALVPAF  188
            A +  S     A  P R+F+ K++  K+   F ++    +P    R+ +  ++  L+PAF
Sbjct  86   APFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIPAF  145

Query  189  VISELRTAFEIGFLLYVPFLVIDMVVASVLLSMGMMMLPPVMISLPFKLMLFVLVDGWYL  248
             +S+L  AF IG+L+Y+PFL ID++++++LL+MGMMM++P+ ISLPFKL++F+L +GW L
Sbjct  146  TVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDL  205

Query  249  LVGSLVRSFG  258
             ++ LV+SF+
Sbjct  206  TLAQLVQSFS  215

237) fliP in NC_020912


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  129 bits (471),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 86/214 (41%), Positives = 144/214 (68%), Gaps = 15/214 (7%)

Query  50   SLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFV  109
            +LQ++ I+  LS++P ++++ TSF ++ +VFSILR+ALG+Q  P+N  L G+AL L++F+
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  110  MAPVF--DKINSQALQ----PYLNEQIPAQEALQKAEVPLKAFMLAQTRTSDLELFVRLS  163
            M+P +   K   +++Q    P+   +  +     KA  P + F+  ++   + + F  L 
Sbjct  67   MGPTLLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLI  121

Query  164  KRT---DIGSP-EATPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMM  219
            KRT   DI     + +L IL+PAF  S+L  AF+IG++I++PFL IDL++S++L+AMGMM
Sbjct  122  KRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMM  181

Query  220  MLSPLIISLPFKIMLFVLVDGWALIIGTLAGSFG  253
            M+SP+ ISLPFK+++F+L +GW L ++ L  SF+
Sbjct  182  MVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

238) fliP in NC_018080


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  129 bits (471),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 86/214 (41%), Positives = 144/214 (68%), Gaps = 15/214 (7%)

Query  50   SLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFV  109
            +LQ++ I+  LS++P ++++ TSF ++ +VFSILR+ALG+Q  P+N  L G+AL L++F+
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  110  MAPVF--DKINSQALQ----PYLNEQIPAQEALQKAEVPLKAFMLAQTRTSDLELFVRLS  163
            M+P +   K   +++Q    P+   +  +     KA  P + F+  ++   + + F  L 
Sbjct  67   MGPTLLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLI  121

Query  164  KRT---DIGSP-EATPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMM  219
            KRT   DI     + +L IL+PAF  S+L  AF+IG++I++PFL IDL++S++L+AMGMM
Sbjct  122  KRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMM  181

Query  220  MLSPLIISLPFKIMLFVLVDGWALIIGTLAGSFG  253
            M+SP+ ISLPFK+++F+L +GW L ++ L  SF+
Sbjct  182  MVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

239) fliP in NC_011770


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  129 bits (471),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 86/214 (41%), Positives = 144/214 (68%), Gaps = 15/214 (7%)

Query  50   SLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFV  109
            +LQ++ I+  LS++P ++++ TSF ++ +VFSILR+ALG+Q  P+N  L G+AL L++F+
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  110  MAPVF--DKINSQALQ----PYLNEQIPAQEALQKAEVPLKAFMLAQTRTSDLELFVRLS  163
            M+P +   K   +++Q    P+   +  +     KA  P + F+  ++   + + F  L 
Sbjct  67   MGPTLLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLI  121

Query  164  KRT---DIGSP-EATPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMM  219
            KRT   DI     + +L IL+PAF  S+L  AF+IG++I++PFL IDL++S++L+AMGMM
Sbjct  122  KRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMM  181

Query  220  MLSPLIISLPFKIMLFVLVDGWALIIGTLAGSFG  253
            M+SP+ ISLPFK+++F+L +GW L ++ L  SF+
Sbjct  182  MVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

240) fliP in NC_017548


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  129 bits (471),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 86/214 (41%), Positives = 144/214 (68%), Gaps = 15/214 (7%)

Query  50   SLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFV  109
            +LQ++ I+  LS++P ++++ TSF ++ +VFSILR+ALG+Q  P+N  L G+AL L++F+
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  110  MAPVF--DKINSQALQ----PYLNEQIPAQEALQKAEVPLKAFMLAQTRTSDLELFVRLS  163
            M+P +   K   +++Q    P+   +  +     KA  P + F+  ++   + + F  L 
Sbjct  67   MGPTLLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLI  121

Query  164  KRT---DIGSP-EATPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMM  219
            KRT   DI     + +L IL+PAF  S+L  AF+IG++I++PFL IDL++S++L+AMGMM
Sbjct  122  KRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMM  181

Query  220  MLSPLIISLPFKIMLFVLVDGWALIIGTLAGSFG  253
            M+SP+ ISLPFK+++F+L +GW L ++ L  SF+
Sbjct  182  MVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

241) fliP in NC_017549


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  129 bits (471),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 86/214 (41%), Positives = 144/214 (68%), Gaps = 15/214 (7%)

Query  50   SLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFV  109
            +LQ++ I+  LS++P ++++ TSF ++ +VFSILR+ALG+Q  P+N  L G+AL L++F+
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  110  MAPVF--DKINSQALQ----PYLNEQIPAQEALQKAEVPLKAFMLAQTRTSDLELFVRLS  163
            M+P +   K   +++Q    P+   +  +     KA  P + F+  ++   + + F  L 
Sbjct  67   MGPTLLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLI  121

Query  164  KRT---DIGSP-EATPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMM  219
            KRT   DI     + +L IL+PAF  S+L  AF+IG++I++PFL IDL++S++L+AMGMM
Sbjct  122  KRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMM  181

Query  220  MLSPLIISLPFKIMLFVLVDGWALIIGTLAGSFG  253
            M+SP+ ISLPFK+++F+L +GW L ++ L  SF+
Sbjct  182  MVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

242) fliP in NC_002516


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  129 bits (471),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 86/214 (41%), Positives = 144/214 (68%), Gaps = 15/214 (7%)

Query  50   SLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFV  109
            +LQ++ I+  LS++P ++++ TSF ++ +VFSILR+ALG+Q  P+N  L G+AL L++F+
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  110  MAPVF--DKINSQALQ----PYLNEQIPAQEALQKAEVPLKAFMLAQTRTSDLELFVRLS  163
            M+P +   K   +++Q    P+   +  +     KA  P + F+  ++   + + F  L 
Sbjct  67   MGPTLLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLI  121

Query  164  KRT---DIGSP-EATPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMM  219
            KRT   DI     + +L IL+PAF  S+L  AF+IG++I++PFL IDL++S++L+AMGMM
Sbjct  122  KRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMM  181

Query  220  MLSPLIISLPFKIMLFVLVDGWALIIGTLAGSFG  253
            M+SP+ ISLPFK+++F+L +GW L ++ L  SF+
Sbjct  182  MVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

243) M062_07750 in NC_021577


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  129 bits (471),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 86/214 (41%), Positives = 144/214 (68%), Gaps = 15/214 (7%)

Query  50   SLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFV  109
            +LQ++ I+  LS++P ++++ TSF ++ +VFSILR+ALG+Q  P+N  L G+AL L++F+
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  110  MAPVF--DKINSQALQ----PYLNEQIPAQEALQKAEVPLKAFMLAQTRTSDLELFVRLS  163
            M+P +   K   +++Q    P+   +  +     KA  P + F+  ++   + + F  L 
Sbjct  67   MGPTLLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLI  121

Query  164  KRT---DIGSP-EATPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMM  219
            KRT   DI     + +L IL+PAF  S+L  AF+IG++I++PFL IDL++S++L+AMGMM
Sbjct  122  KRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMM  181

Query  220  MLSPLIISLPFKIMLFVLVDGWALIIGTLAGSFG  253
            M+SP+ ISLPFK+++F+L +GW L ++ L  SF+
Sbjct  182  MVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

244) fliP in NC_008463


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  129 bits (471),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 86/214 (41%), Positives = 144/214 (68%), Gaps = 15/214 (7%)

Query  50   SLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFV  109
            +LQ++ I+  LS++P ++++ TSF ++ +VFSILR+ALG+Q  P+N  L G+AL L++F+
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  110  MAPVF--DKINSQALQ----PYLNEQIPAQEALQKAEVPLKAFMLAQTRTSDLELFVRLS  163
            M+P +   K   +++Q    P+   +  +     KA  P + F+  ++   + + F  L 
Sbjct  67   MGPTLLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLI  121

Query  164  KRT---DIGSP-EATPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMM  219
            KRT   DI     + +L IL+PAF  S+L  AF+IG++I++PFL IDL++S++L+AMGMM
Sbjct  122  KRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMM  181

Query  220  MLSPLIISLPFKIMLFVLVDGWALIIGTLAGSFG  253
            M+SP+ ISLPFK+++F+L +GW L ++ L  SF+
Sbjct  182  MVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

245) fliP in NC_013939


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  128 bits (468),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 87/190 (46%), Positives = 131/190 (69%), Gaps = 7/190 (3%)

Query  62   MVTSFTRLIIVFSFLRSALGTQQSPPNQVLIGLALFLTFFIMSPVLNDMYKNAVQPYMDG  121
            M TSF +L +VFS+LR+ALG QQ PPN  L G+AL L++FIM+P L  + K+  +P   +
Sbjct  26   MGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-KERWHPVQVA  84

Query  122  KLNFTQALVEAKK--PLRKFLLKNTRKKELLTFIEISKVQRPK--TPDDIPDS--VLIPA  175
               F  +  ++K   P R+FL KN+  KE   F ++ K  +P        PDS  +LIPA
Sbjct  85   GAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIPA  144

Query  176  FITSELQTAFEIGFLLFLPFLVIDFVVASVLLSMGMMMLPPVMISLPFKILLFVLVDGWG  235
            F  S+L  AF IG+L++LPFL ID++++++LL+MGMMM++P+ ISLPFK+L+F+L +GW+
Sbjct  145  FTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWD  204

Query  236  LIVGSMVKSF  245
            L ++ +V+SF
Sbjct  205  LTLAQLVQSF  214

246) CCALI_00613 in NC_021487


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  128 bits (469),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 84/200 (42%), Positives = 129/200 (65%), Gaps = 17/200 (8%)

Query  73   PSILIMMTSFTRLIIVFSLLRTALGAPQIPPNQVLVGLSLFLTLFIMRPTLQAINQDAFQ  132
            P I++M TSF +L +VFS+LR ALG  Q+PPN  L G++L L+LFIM PTL A+++    
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKER---  77

Query  133  PYLRKQINIEQAIQRAED-------PLRAFMIRQTYKSDLSFFLNLSHAPRP----RTAE  181
               +  +++  A  ++ +       P R F+ +++   + ++F NL    +P    R   
Sbjct  78   ---WHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIK  134

Query  182  DVSLITLIPAFLTSELKTAFIIGFYIYLPFLVIDIVVASTLMSMGMMMLPPTIISLPAKL  241
              SL+ LIPAF  S+L  AF IG+ IYLPFL ID+++++ L++MGMMM++P  ISLP KL
Sbjct  135  PDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKL  194

Query  242  LLFVLADGWTLLIGSLAHSF  261
            L+F+LA+GW L ++ L +SF
Sbjct  195  LIFLLAGGWDLTLAQLVQSF  214

247) Dd586_1882 in NC_013592


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  128 bits (469),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 71/177 (41%), Positives = 127/177 (72%), Gaps = 3/177 (1%)

Query  13   LFLGSLSLIPLAMIVCTCFLKISMVLMLTRNAIGVQQVPPNMALYGVALAATLFVMAPVF  72
            LFL  LS++PL +++ T FLK+++V+ + RNA+G+QQVPPN+ALYG AL  +LF+M+P +
Sbjct  14   LFL--LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTL  71

Query  73   SDIKLRFQDAPVDFSSLDALESSVTRGIEPLQKFMSRNTDPDILTHLHENSLRMWPAAMT  132
              +K R +   V  +++ + E   ++++ P ++F+ +N++      +++   R WP  + 
Sbjct  72   LAVKERWHPVQVAGAPFWTSEWD-SKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIK  130

Query  133  EKITTQNILLILPAYVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPTT  189
             KI  +++L+++PA+ +S+L  +F+IG+LIY+PF+ IDL++SN+LLA+GM MV+P T
Sbjct  131  RKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMT  187

248) Hore_16720 in NC_011899


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  128 bits (470),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 80/196 (41%), Positives = 135/196 (69%), Gaps = 17/196 (8%)

Query  69   VMVTSFTRVIVVLGLIRQALATRRMPPNQVLIGLALFLTVFIMAPV-------WQDINEQ  121
            VM TSF ++ VV++++R+AL+ +++PPN  L G+AL L++FIM+P        W+ ++  
Sbjct  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVA  84

Query  122  ALQPYLNNEITTQQAYDRGIKPIRDFMFKQTREKDLALFVNMTGIERPEN--RADIPT--  177
            +  P+  +E  +     +++ P R+F+ K++ EK+   F N+    +PE+  R   P   
Sbjct  85   G-APFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSL  138

Query  178  YVLIPAFVISELKTAFQIGFLIYLPFLMIDMVVASILMSMGMLMLPPIIISLPFKLLLFI  237
             +LIPAF +S+L  AF+IG+LIYLPFL ID+++++IL++MGM+M++P+ ISLPFKLL+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  238  LVDGWYLVIESLVKTF  253
            L +GW L +  LV++F
Sbjct  199  LAGGWDLTLAQLVQSF  214

249) hrcR in NC_004578


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  128 bits (469),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 79/196 (41%), Positives = 138/196 (71%), Gaps = 3/196 (1%)

Query  1    MSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVAHEMQQ  60
            +S++P+++++ T+FLK+A+ + I RNA+G+QQVPPN+ALYG+AL  ++F+M+P    +++
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKE  76

Query  61   RVHDHPLELGNTE-KLQASARTVIEPLQRFMTRNTDPDVVAHLLDNTQRMWPKEMADQAS  119
            R   HP++++ +           + P ++F+ +N++      + +  +R WP ++  +  
Sbjct  77   R--WHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIK  134

Query  120  KNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTlslplkl  179
             + LL+ IPAF +S+L  +F IG+LIY+PF+ IDL++SN+LLA+GM MVSPMT+SLP+KL
Sbjct  135  PDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKL  194

Query  180  llFVMVSGWSRLLDSL  195
            L+F++ +GW   L  L
Sbjct  195  LIFLLAGGWDLTLAQL  210

250) PC1_2212 in NC_012917


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  128 bits (467),  Expect = 4e-31, Method: Compositional matrix adjust.
 Identities = 84/195 (44%), Positives = 141/195 (73%), Gaps = 5/195 (2%)

Query  13   LFLGALSLIPLMMIVCTCFLKIAIVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVF  72
            LFL  LS++PL++++ T FLK+A+V+ I RNA+G+QQVPPN+ALYG+AL  +LF+M+P +
Sbjct  14   LFL--LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTL  71

Query  73   QDISKRVQEKPLDMTDIT-SLQASVTYGLEPLQTFMSRNVDPDILTHLHENSLQMWPASL  131
              +  R +  P+++++         + +L P + F+ +N +      +++   + WP  +
Sbjct  72   LAVKERWH--PVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDI  129

Query  132  SEKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTls  191
              K++ ++LL++IPAF +S+L  +F+IG+LIY+PF+ IDL++SN+LLA+GM MV+PMT+S
Sbjct  130  KRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTIS  189

Query  192  lplklllfvlVNGWT  206
            LP+KLL+F+L  GW 
Sbjct  190  LPFKLLIFLLAGGWD  204

251) PCC21_022910 in NC_018525


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  128 bits (467),  Expect = 4e-31, Method: Compositional matrix adjust.
 Identities = 84/195 (44%), Positives = 141/195 (73%), Gaps = 5/195 (2%)

Query  13   LFLGALSLIPLMMIVCTCFLKIAIVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVF  72
            LFL  LS++PL++++ T FLK+A+V+ I RNA+G+QQVPPN+ALYG+AL  +LF+M+P +
Sbjct  14   LFL--LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTL  71

Query  73   QDISKRVQEKPLDMTDIT-SLQASVTYGLEPLQTFMSRNVDPDILTHLHENSLQMWPASL  131
              +  R +  P+++++         + +L P + F+ +N +      +++   + WP  +
Sbjct  72   LAVKERWH--PVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDI  129

Query  132  SEKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTls  191
              K++ ++LL++IPAF +S+L  +F+IG+LIY+PF+ IDL++SN+LLA+GM MV+PMT+S
Sbjct  130  KRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTIS  189

Query  192  lplklllfvlVNGWT  206
            LP+KLL+F+L  GW 
Sbjct  190  LPFKLLIFLLAGGWD  204

252) fliP in NC_007348


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  128 bits (467),  Expect = 4e-31, Method: Compositional matrix adjust.
 Identities = 84/199 (43%), Positives = 136/199 (69%), Gaps = 7/199 (3%)

Query  71   LSFLPAAVLMMTGFTRIVIVLGLLRNALGTASSPPNQVLVGLSLFLTFFVMSPVLDRVYN  130
            LS+LP  ++M T+F ++ +V+++LRNALG    PPN  L G++L L++F+M+P L  V +
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  131  DAYKPLSENRISLETAM--AKAAEPLKGFMLKQTREKDLAMFAQMAKA--PE--MQGPEE  184
            +   P+     ++ T+   +KA  P + F+ K++ EK+   F ++ K   PE   +    
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKP  135

Query  185  VPMSILVPAFVTSELKTAFQIGFTIFIPFLIIDLVVASVLMAMGMMMVPPATISLPFKLM  244
             ++ IL+PAF  S+L  AF+IG+ I++PFL IDL+++++L+AMGMMMV+P TISLPFKL+
Sbjct  136  DSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLL  195

Query  245  LFVLVDGWQLLLGSLAQSF  263
            +F+L +GW+L L+ L QSF
Sbjct  196  IFLLAGGWDLTLAQLVQSF  214

253) M301_1012 in NC_014207


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  128 bits (468),  Expect = 4e-31, Method: Compositional matrix adjust.
 Identities = 81/197 (42%), Positives = 133/197 (68%), Gaps = 11/197 (5%)

Query  69   PAALLMMTGFTRIIIVLSLLRQALGTQSAPPNQVMVGLALFLTFFVMSPVIDKIYVDAYQ  128
            P  ++M T+F ++ +V+S+LR+ALG Q  PPN  + G+AL L++F+M+P +  +  +  +
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-KERWH  79

Query  129  PL--SENKITMQEAMDKGAAPLKAFMMKQTREGDLALFVNMAK------IEKIETPDQVP  180
            P+  +   +   E   K+ AP + F+ K++ E +   F N+ K      I +   PD  +
Sbjct  80   PVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPD--S  137

Query  181  LLVLVPAFMTSELKTAFQIGFAIFIPFLIIDMVVASVLMAMGMMMVSPSIVSLPFKLMLF  240
            LL+L+PAF  S+L  AF+IG+ I++PFL ID++++++L+AMGMMMVSP  +SLPFKL++F
Sbjct  138  LLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIF  197

Query  241  VLVDGWQLLLGSLVQSF  257
            +L +GW+L L+ LVQSF
Sbjct  198  LLAGGWDLTLAQLVQSF  214

254) mlr8766 in NC_002678


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  128 bits (467),  Expect = 4e-31, Method: Compositional matrix adjust.
 Identities = 73/179 (41%), Positives = 119/179 (67%), Gaps = 3/179 (1%)

Query  40   LVRNALGTQTIPPNIALYAVALILTMFLSAPVVEQTYDRMTDPKLHYQTFDDWVSA-AKS  98
            ++RNALG Q +PPNIALY+ AL+L++F+ +P +    +R    ++    F  W S     
Sbjct  39   ILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAPF--WTSEWDSK  96

Query  99   GSEPLRDHLKKFTNEEQRQFFLSSTEKVWPAEMRAKATVDDLSILVPSFLISELKRAFEI  158
            +  P R+ L+K ++E + ++F +   + WP +++ K   D L IL+P+F +S+L +AF I
Sbjct  97   ALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRI  156

Query  159  GFLLYLPFIVIDLIVTTILMAMGMSMVSPTLISVPFKLFVFVAIDGWSKLMHGLVLSYT  217
            G+L+YLPF+ IDL+++ IL+AMGM MVSP  IS+PFKL++F+  +GW   +  LV S++
Sbjct  157  GLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

255) hrcR in NC_004547


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  127 bits (464),  Expect = 6e-31, Method: Compositional matrix adjust.
 Identities = 83/195 (43%), Positives = 141/195 (73%), Gaps = 5/195 (2%)

Query  13   LFLGALSLIPLMMIVCTCFLKIAIVLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVF  72
            LFL  LS++PL++++ T FLK+A+V+ I RNA+G+QQVPPN+ALYG+AL  ++F+M+P +
Sbjct  14   LFL--LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTL  71

Query  73   QDISKRVQEKPLDMTDIT-SLQASVTYGLEPLQTFMSRNVDPDILTHLHENSLQMWPASL  131
              +  R +  P+++++         + +L P + F+ +N +      +++   + WP  +
Sbjct  72   LAVKERWH--PVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDI  129

Query  132  SEKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTls  191
              K++ ++LL++IPAF +S+L  +F+IG+LIY+PF+ IDL++SN+LLA+GM MV+PMT+S
Sbjct  130  KRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTIS  189

Query  192  lplklllfvlVNGWT  206
            LP+KLL+F+L  GW 
Sbjct  190  LPFKLLIFLLAGGWD  204

256) fliP in NC_007503


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  127 bits (464),  Expect = 7e-31, Method: Compositional matrix adjust.
 Identities = 78/193 (41%), Positives = 135/193 (70%), Gaps = 15/193 (7%)

Query  72   TSFTRIVVVLSLLRNAMGTQQAPPNQVLIGLALFLTIFIMSPVINKINQ--DAIQ----P  125
            TSF ++ VV+S+LRNA+G QQ PPN  L G+AL L++FIM+P +  +++  +++Q    P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  126  YLNNQITQEQAIRAAEAPLKDFMLKQTREKDLALFIELAKLPRPQT-KDDV---PFTVVV  181
            +  ++         A AP ++F+ K++ EK+   F +L K  +P+  K  +   ++ +++
Sbjct  88   FWTSEWDSK-----ALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILI  142

Query  182  PAFIISELKTAFQMGFMLFLPFLIIDMVVASILMSMGMFMIPPMLVALPFKLLLFVLADG  241
            PAF +S+L  AF++G++++LPFL ID+++++IL++MGM M++PM ++LPFKLL+F+LA+G
Sbjct  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202

Query  242  WYLVVKSLVSSFS  254
            W L +  LV SFS
Sbjct  203  WDLTLAQLVQSFS  215

257) fliP in NC_010645


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  126 bits (460),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 79/197 (41%), Positives = 136/197 (70%), Gaps = 9/197 (4%)

Query  64   LPAALLMMTGFTRIIIVLGLLRSAMGTAMSPPNHVLVGIALFLTFYTMSPVFDKIYTEAY  123
            LP  ++M T+F ++ +V+++LR+A+G    PPN  L G+AL L+++ M+P +  +  E  
Sbjct  20   LPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-KERW  78

Query  124  QPLSTGSIPFETALERAG---APLHTFMLHQTRENDLALFANLANIPKIEDPSK----VP  176
            +P+  ++ PF T+ E+ +   AP + F+  ++ E++   F NL +    ED  +     +
Sbjct  79   HPVQVAGAPFWTS-EWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDS  137

Query  177  MRILIPAFITSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPVTVSLPFKLMLF  236
            + ILIPAF  S+L  AF+IG+ I++PFL IDL+++++L+A+GMMMV+P+T+SLPFKL++F
Sbjct  138  LLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIF  197

Query  237  VLADGWNLLLGSLAKSF  253
            +LA+GW+L L+ L +SF
Sbjct  198  LLAGGWDLTLAQLVQSF  214

258) fliP in NC_015391


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  126 bits (461),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 80/198 (41%), Positives = 130/198 (66%), Gaps = 5/198 (2%)

Query  61   LSLAPTFLVLTTCFTRIIVVLSFVRSSLGTQQNPPNLVLMGIALFLSLFIMQPVYTDVMN  120
            LS+ P ++V+ T F ++ VV+S++R++LG QQ PPN+ L G+AL LSLFIM P    V +
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKE  76

Query  121  EAITPYINEEISGQAAFESAEL-PIKEFMYKQTRDEDIQLFLDISETAKPADVKEL----  175
                  +       +  +S  L P ++F+ K++ + + + F ++   + P D+K      
Sbjct  77   RWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPD  136

Query  176  PLTVAIPAFIISELRTAFSIGFLIFIPFLVIDIVVASILMSMGMFMLSPVMISLPFKLLL  235
            +L + IPAF +S+L  AF IG+LI++PFL ID+++++IL++MGM M+SP+ ISLPFKLL+
Sbjct  137  SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLI  196

Query  236  FVLVDGWYLVVESLVTGF  253
            F+L +GW L +  LV +F
Sbjct  197  FLLAGGWDLTLAQLVQSF  214

259) fliP in NC_007974


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  126 bits (461),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 82/202 (41%), Positives = 136/202 (68%), Gaps = 13/202 (6%)

Query  70   LSFLPAAMLMMTGFTRIIIVLGLLRNALGTASSPPNQVLVGLSLFLTFFVMSPVFDKVYT  129
            LS+LP  ++M T+F ++ +V+++LRNALG    PPN  L G++L L++F+M+P +  V  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  130  DAYQPLSENKISLETA--AQRAAVPLRAFMLRQTREKDLAMFAQMAKTPELQGPEDV---  184
            +  +P+     ++ T+    +A  P R F+ +++ EK+   F ++ K      PED+   
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRT---WPEDIKRK  132

Query  185  ----PFTVLVPAFVTSELKTAFQIGFTIFIPFLIIDLVVASVLMAMGMMMVPPATISLPF  240
                ++ +L+PAF  S+L  AF+IG+ I++PFL IDL+++++L+AMGMMMV+P TISLPF
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  241  KLMLFVLVDGWQLLLGSLAQSF  262
            KL++F+L +GW+L L+ L QSF
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSF  214

260) hrcR in NC_005773


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  125 bits (456),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 86/201 (43%), Positives = 145/201 (73%), Gaps = 5/201 (2%)

Query  11   LFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVA  70
            LFL  LS++P+++++ T+FLK+A+ + I RNA+G+QQVPPN+ALYG+AL  ++F+M+P  
Sbjct  14   LFL--LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTL  71

Query  71   HEIQQRVHEHPLELGSADKLQSSLKT-VIEPLQRFMTRNTDPDVVAHLLENTQRMWPKEM  129
              +++R   HP+++++A    S   +  + P ++F+ +N++      + +  +R WP ++
Sbjct  72   LAVKER--WHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDI  129

Query  130  ADQANKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTls  189
              + + + LL+ IPAF +S+L  +F IG+LIY+PF+ IDL++SN+LLA+GM MVSPMT+S
Sbjct  130  KRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTIS  189

Query  190  lplklllfvlVSGWSRLLDSL  210
            LP+KLL+F+L +GW   L  L
Sbjct  190  LPFKLLIFLLAGGWDLTLAQL  210

261) fliP in NC_009792


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  125 bits (456),  Expect = 3e-30, Method: Compositional matrix adjust.
 Identities = 80/199 (41%), Positives = 134/199 (68%), Gaps = 7/199 (3%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L++LP I++M TSF ++ +VF++LRNALG    PPN  L G+AL L++FIM+P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  111  DAWQPF--SEEKISMQEALEKGAQPLREFMLRQTREADLGLFARLAN----SGPLQGPEA  164
            + W+P   +   +   E   K+  P R+F+ +++ E +   F  L +     +  +   +
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKP  135

Query  165  VPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             ++ IL+PA+  S+L  AF+IG+ I++PFL IDL+I+++L+A+GMMMV+P TI+LPFKL+
Sbjct  136  DSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLL  195

Query  225  LFVLVDGWQLLVGSLAQSF  243
            +F+L +GW+L ++ L QSF
Sbjct  196  IFLLAGGWDLTLAQLVQSF  214

262) NT01EI_2431 in NC_012779


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  124 bits (454),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 86/213 (41%), Positives = 143/213 (68%), Gaps = 15/213 (7%)

Query  42   PVQTLVFLTSLSFLPAALLLMTSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFI  101
            P+Q + +L  LS+LP  +++ TSF ++ +V+++LRNALG    PPN  L G+AL L++FI
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  102  MSPVLDKIYQEAYQPFSEQKISMETALDRGAKPL---RAFMLRQTRETDLALFSRLAKQP  158
            M+P L  + +E  +P      +  T+ ++++K+L   R F+ +++ E +   F  L K+ 
Sbjct  67   MGPTLLAV-KERWHPVQVAGAPFWTS-EWDSKALAPYRQFLQKNSEEKEANYFRNLIKRT  124

Query  159  EMQGPEDVPMRI-------LLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMM  211
                PED+  +I       L+PA+  S+L  AF+IG+ +++PFL IDL+++++L+A+GMM
Sbjct  125  ---WPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMM  181

Query  212  MVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF  244
            MV+P TISLPFKL++F+L +GW+L L+ L QSF
Sbjct  182  MVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

263) D782_1687 in NC_020063


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  124 bits (454),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 80/199 (41%), Positives = 134/199 (68%), Gaps = 7/199 (3%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYT  110
            L+++P I++M TSF ++ +VF++LRNALG    PPN  L G+AL L++FIM+P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  111  DAYQPF--SEDKISLQEAMDKGSQPLREFMLRQTREADLALFARLANSA-PIEGPEAV--  165
            +  +P   +   +   E   K+  P R+F+ +++ E +   F  L + + P +    +  
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKP  135

Query  166  -PLRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLM  224
             +L IL+PA+  S+L  AF+IG+ I++PFL IDL+I+++L+A+GMMMV+P TI+LPFKL+
Sbjct  136  DSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLL  195

Query  225  LFVLVDGWQLLVGSLAQSF  243
            +F+L +GW+L ++ L QSF
Sbjct  196  IFLLAGGWDLTLAQLVQSF  214

264) Adeg_2033 in NC_013385


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  124 bits (453),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 83/200 (42%), Positives = 137/200 (69%), Gaps = 15/200 (7%)

Query  34   PAILILMTSFTRIVIVLSLLRSALGTHQAPPNQVLVGLALFLTVFIMAP----VYERIN-  88
            P I+++ TSF ++ +V+S+LR+ALG +Q PPN  L G+AL L++FIM+P    V ER + 
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP  80

Query  89   -QEAIRPYLANQITRQEAQVRGLRPLKEFMLRQVREKDLALFVNLAH--LPQPVNKEELP  145
             Q A  P+ ++     E + ++L P ++F+ ++  EK+   F NL     P+ +++   P
Sbjct  81   VQVAGAPFWTS-----EWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKP  135

Query  146  --LRVIIPAFLISELKTAFAMGFLLYLPFLVIDMVVASVLMSMGMFMLPPVMISLPFKLL  203
              L ++IPAF +S+L  AF +G+L+YLPFL ID++++++L++MGM M++P+ ISLPFKLL
Sbjct  136  DSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLL  195

Query  204  LFVLVDGWYLVVKSLVESFH  223
            +F+L +GW L +  LV+SF 
Sbjct  196  IFLLAGGWDLTLAQLVQSFS  215

265) HrcR in NC_007005


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  124 bits (452),  Expect = 6e-30, Method: Compositional matrix adjust.
 Identities = 87/201 (44%), Positives = 142/201 (71%), Gaps = 5/201 (2%)

Query  13   LFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVA  72
            LFL  LS++P+++++ T+FLK+A+ + I RNA+G+QQVPPN+ALYG+AL  ++F+M+P  
Sbjct  14   LFL--LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTL  71

Query  73   HDIQQRVHEHPLELSNADKLQSSLKV-VIEPLQRFMTRNTDPDVVAHLLENTQRMWPKEM  131
              +++R   HP++++ A    S      + P ++F+ +N++      + +  +R WP ++
Sbjct  72   LAVKER--WHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDI  129

Query  132  ADQASKDDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTls  191
              +   D LL+ IPAF +S+L  +F IG+LIY+PF+ IDL++SN+LLA+GM MVSPMT+S
Sbjct  130  KRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTIS  189

Query  192  lplklllfvlVSGWSRLLDSL  212
            LP+KLL+F+L +GW   L  L
Sbjct  190  LPFKLLIFLLAGGWDLTLAQL  210

266) rscR in NC_017911


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  124 bits (452),  Expect = 6e-30, Method: Compositional matrix adjust.
 Identities = 86/201 (43%), Positives = 141/201 (71%), Gaps = 5/201 (2%)

Query  18   LSLMPMLLVVCTAFLKIVIVLMITRNAIGVQQVPPSMAINGIALAATLFIMAPVGYEIAE  77
            LS++P+++V+ T+FLK+ +V+ I RNA+G+QQVPP++A+ G+AL  +LFIM+P    + E
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKE  76

Query  78   NLKASPLDMTNVQTFLST--GNEAINPLRAFMLRNVDPDVLTHLLENTARLWPAKMAQEV  135
              +  P++++    F ++  ++ A+ P R F+ +N +      + +   R WP  + + +
Sbjct  77   --RWHPVQVAGA-PFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKI  133

Query  136  QREDLILLIPAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTISlplk  195
            + + L++LIPAF +SQL  +F IG+LIY+PF+ IDL++SN+LLA+GM MVSPMTISLP+K
Sbjct  134  KPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFK  193

Query  196  lllfvlVSGWSRLLDSLFLSY  216
            LL+F+L +GW   L  L  S+
Sbjct  194  LLIFLLAGGWDLTLAQLVQSF  214

267) fliP in NC_007404


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  124 bits (452),  Expect = 6e-30, Method: Compositional matrix adjust.
 Identities = 78/190 (42%), Positives = 126/190 (67%), Gaps = 7/190 (3%)

Query  69   MMTSFTRIIIVLSLLRHALGTQSSPPNQVLIGLALFLTLFVMGPTFDKIYVEAYQPL--A  126
            M TSF ++ +V+S+LR+ALG Q  PPN  L G+AL L+LF+MGPT+  +  E  +P+  A
Sbjct  26   MGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-KERWHPVQVA  84

Query  127  ENRIQMQEALDKGAVPLRAFMLKQTRESDLALFVKMSRSPAP----KTAADIPMRVLIPA  182
               +   E   K+  P R F+ K++ E +   F ++ +   P    +     ++ +LIPA
Sbjct  85   GAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIPA  144

Query  183  YITSELKTAFQIGFAVFIPFLIIDMVVASILMAMGMMMVSPAIVALPFKIILFVLVDGWN  242
            +  S+L  AF+IG+ +++PFL ID+++++IL+AMGMMMVSP  ++LPFK+++F+L +GW+
Sbjct  145  FTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWD  204

Query  243  LLLGSLAQSF  252
            L L+ L QSF
Sbjct  205  LTLAQLVQSF  214

268) Arnit_1944 in NC_014166


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  124 bits (452),  Expect = 6e-30, Method: Compositional matrix adjust.
 Identities = 77/192 (41%), Positives = 135/192 (71%), Gaps = 9/192 (4%)

Query  58   MVTSFTRLIIVLSLLRQAMGLQQAPPNQIVISMALILTIFIMEPYAKTSYNEGIKPYMEE  117
            M TSF +L +V+S+LR+A+G+QQ PPN  + + AL+L++FIM P +  + +E   P    
Sbjct  26   MGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGP-TLLAVKERWHPVQVA  84

Query  118  KIGY--EEAFAKSVKPFKEFMIKNTREEDIALFYR--IKK---EKNPKNIDDVALTLLMP  170
               +   E  +K++ P+++F+ KN+ E +   ++R  IK+   E   ++I   +L +L+P
Sbjct  85   GAPFWTSEWDSKALAPYRQFLQKNSEEKEAN-YFRNLIKRTWPEDIKRKIKPDSLLILIP  143

Query  171  AFIVSELRTAFEIGFLIFLPFLVIDIIVASILMSLGMMMLPPVMISLPIKVIFFIIIDGW  230
            AF VS+L  AF IG+LI+LPFL ID+++++IL+++GMMM++P+ ISLP+K+++F++ +GW
Sbjct  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203

Query  231  QLIIGNLAQSFK  242
            +L +++L QSF 
Sbjct  204  DLTLAQLVQSFS  215

269) fliP in NC_021820


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  123 bits (448),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 131/202 (65%), Gaps = 13/202 (6%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L++LP I++M TSF ++ +VF++LRNALG    PPN  L G+AL L++FIM+P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  111  DAYQPF--SEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQGPEAVPMR  168
            +  +P   +   +   E   K+  P R F+ +++ E +   F  L +      PE +  +
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW---PEDIKRK  132

Query  169  I-------LLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPF  221
            I       L+PA+  S+L  AF+IG+ I++PFL IDL+I+++L+A+GMMMV+P TI+LPF
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  222  KLMLFVLVDGWQLLMGSLAQSF  243
            KL++F+L +GW+L ++ L QSF
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSF  214

270) fliP in NC_016856


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  123 bits (448),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 131/202 (65%), Gaps = 13/202 (6%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L++LP I++M TSF ++ +VF++LRNALG    PPN  L G+AL L++FIM+P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  111  DAYQPF--SEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQGPEAVPMR  168
            +  +P   +   +   E   K+  P R F+ +++ E +   F  L +      PE +  +
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW---PEDIKRK  132

Query  169  I-------LLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPF  221
            I       L+PA+  S+L  AF+IG+ I++PFL IDL+I+++L+A+GMMMV+P TI+LPF
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  222  KLMLFVLVDGWQLLMGSLAQSF  243
            KL++F+L +GW+L ++ L QSF
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSF  214

271) fliP in NC_017046


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  123 bits (448),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 131/202 (65%), Gaps = 13/202 (6%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L++LP I++M TSF ++ +VF++LRNALG    PPN  L G+AL L++FIM+P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  111  DAYQPF--SEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQGPEAVPMR  168
            +  +P   +   +   E   K+  P R F+ +++ E +   F  L +      PE +  +
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW---PEDIKRK  132

Query  169  I-------LLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPF  221
            I       L+PA+  S+L  AF+IG+ I++PFL IDL+I+++L+A+GMMMV+P TI+LPF
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  222  KLMLFVLVDGWQLLMGSLAQSF  243
            KL++F+L +GW+L ++ L QSF
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSF  214

272) STMMW_19591 in NC_016854


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  123 bits (448),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 131/202 (65%), Gaps = 13/202 (6%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L++LP I++M TSF ++ +VF++LRNALG    PPN  L G+AL L++FIM+P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  111  DAYQPF--SEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQGPEAVPMR  168
            +  +P   +   +   E   K+  P R F+ +++ E +   F  L +      PE +  +
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW---PEDIKRK  132

Query  169  I-------LLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPF  221
            I       L+PA+  S+L  AF+IG+ I++PFL IDL+I+++L+A+GMMMV+P TI+LPF
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  222  KLMLFVLVDGWQLLMGSLAQSF  243
            KL++F+L +GW+L ++ L QSF
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSF  214

273) fliP in NC_003197


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  123 bits (448),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 131/202 (65%), Gaps = 13/202 (6%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L++LP I++M TSF ++ +VF++LRNALG    PPN  L G+AL L++FIM+P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  111  DAYQPF--SEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQGPEAVPMR  168
            +  +P   +   +   E   K+  P R F+ +++ E +   F  L +      PE +  +
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW---PEDIKRK  132

Query  169  I-------LLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPF  221
            I       L+PA+  S+L  AF+IG+ I++PFL IDL+I+++L+A+GMMMV+P TI+LPF
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  222  KLMLFVLVDGWQLLMGSLAQSF  243
            KL++F+L +GW+L ++ L QSF
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSF  214

274) fliP in NC_016810


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  123 bits (448),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 131/202 (65%), Gaps = 13/202 (6%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L++LP I++M TSF ++ +VF++LRNALG    PPN  L G+AL L++FIM+P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  111  DAYQPF--SEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQGPEAVPMR  168
            +  +P   +   +   E   K+  P R F+ +++ E +   F  L +      PE +  +
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW---PEDIKRK  132

Query  169  I-------LLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPF  221
            I       L+PA+  S+L  AF+IG+ I++PFL IDL+I+++L+A+GMMMV+P TI+LPF
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  222  KLMLFVLVDGWQLLMGSLAQSF  243
            KL++F+L +GW+L ++ L QSF
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSF  214

275) fliP in NC_016857


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  123 bits (448),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 131/202 (65%), Gaps = 13/202 (6%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L++LP I++M TSF ++ +VF++LRNALG    PPN  L G+AL L++FIM+P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  111  DAYQPF--SEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQGPEAVPMR  168
            +  +P   +   +   E   K+  P R F+ +++ E +   F  L +      PE +  +
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW---PEDIKRK  132

Query  169  I-------LLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPF  221
            I       L+PA+  S+L  AF+IG+ I++PFL IDL+I+++L+A+GMMMV+P TI+LPF
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  222  KLMLFVLVDGWQLLMGSLAQSF  243
            KL++F+L +GW+L ++ L QSF
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSF  214

276) fliP in NC_016860


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  123 bits (448),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 131/202 (65%), Gaps = 13/202 (6%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L++LP I++M TSF ++ +VF++LRNALG    PPN  L G+AL L++FIM+P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  111  DAYQPF--SEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQGPEAVPMR  168
            +  +P   +   +   E   K+  P R F+ +++ E +   F  L +      PE +  +
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW---PEDIKRK  132

Query  169  I-------LLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPF  221
            I       L+PA+  S+L  AF+IG+ I++PFL IDL+I+++L+A+GMMMV+P TI+LPF
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  222  KLMLFVLVDGWQLLMGSLAQSF  243
            KL++F+L +GW+L ++ L QSF
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSF  214

277) fliP in NC_021151


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  123 bits (448),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 131/202 (65%), Gaps = 13/202 (6%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L++LP I++M TSF ++ +VF++LRNALG    PPN  L G+AL L++FIM+P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  111  DAYQPF--SEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQGPEAVPMR  168
            +  +P   +   +   E   K+  P R F+ +++ E +   F  L +      PE +  +
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW---PEDIKRK  132

Query  169  I-------LLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPF  221
            I       L+PA+  S+L  AF+IG+ I++PFL IDL+I+++L+A+GMMMV+P TI+LPF
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  222  KLMLFVLVDGWQLLMGSLAQSF  243
            KL++F+L +GW+L ++ L QSF
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSF  214

278) fliP in NC_016863


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  123 bits (448),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 131/202 (65%), Gaps = 13/202 (6%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L++LP I++M TSF ++ +VF++LRNALG    PPN  L G+AL L++FIM+P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  111  DAYQPF--SEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQGPEAVPMR  168
            +  +P   +   +   E   K+  P R F+ +++ E +   F  L +      PE +  +
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW---PEDIKRK  132

Query  169  I-------LLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPF  221
            I       L+PA+  S+L  AF+IG+ I++PFL IDL+I+++L+A+GMMMV+P TI+LPF
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  222  KLMLFVLVDGWQLLMGSLAQSF  243
            KL++F+L +GW+L ++ L QSF
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSF  214

279) fliP in NC_021814


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  123 bits (448),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 131/202 (65%), Gaps = 13/202 (6%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L++LP I++M TSF ++ +VF++LRNALG    PPN  L G+AL L++FIM+P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  111  DAYQPF--SEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQGPEAVPMR  168
            +  +P   +   +   E   K+  P R F+ +++ E +   F  L +      PE +  +
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW---PEDIKRK  132

Query  169  I-------LLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPF  221
            I       L+PA+  S+L  AF+IG+ I++PFL IDL+I+++L+A+GMMMV+P TI+LPF
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  222  KLMLFVLVDGWQLLMGSLAQSF  243
            KL++F+L +GW+L ++ L QSF
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSF  214

280) Mar181_0819 in NC_015559


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  123 bits (450),  Expect = 9e-30, Method: Compositional matrix adjust.
 Identities = 78/192 (41%), Positives = 130/192 (68%), Gaps = 14/192 (7%)

Query  62   SFTRIVVVLAILRQAIGLQQTPSNQIMIGMALFLTLFIMTPTL----DRVN--QVALQPY  115
            SF ++ VV++ILR+A+G+QQ P+N  + G AL L+LFIM PTL    +R +  QVA  P+
Sbjct  29   SFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAPF  88

Query  116  LNEEMTSVQAVEAASGPIRDFMLAQTREDDINLFVKLAGR---EGSIDSLDSLPFTILMP  172
               E  S      A +P R+F+  ++ E + N F +L  R   E+    + + ++ IL+P
Sbjct  89   WTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143

Query  173  AFVTSELKTAFQIGFMIFIPFLIVDMVVASVLMAMGMMMLSPVIISLPFKIMLFVMVDGW  232
            AF  S+L  AF+IG++I++PFL +D++++++L+AMGMMM+SP+ ISLPFK+++F++ +GW
Sbjct  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203

Query  233  AMIMGTLAASFG  244
             + ++ L  SF+
Sbjct  204  DLTLAQLVQSFS  215

281) fliP in NC_013716


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  122 bits (447),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 132/202 (66%), Gaps = 13/202 (6%)

Query  51   LTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L+++P I++M TSF ++ +VF++LRNALG    PPN  L G+AL L++FIM+P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  111  EAYQPF--SEEKISMQEALDKGAQPLREFMLRQTREADLALFARLANSGPLQGPEAVPMR  168
            E  +P   +   +   E   K+  P R+F+ +++ E +   F  L +      PE +  +
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW---PEDIKRK  132

Query  169  I-------LLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPF  221
            I       L+PA+  S+L  AF+IG+ I++PFL IDL+I+++L+A+GMMMV+P TI+LPF
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  222  KLMLFVLVDGWQLLVGSLAQSF  243
            KL++F+L +GW+L ++ L QSF
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSF  214

282) sctR in NC_010530


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  122 bits (445),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 87/213 (41%), Positives = 154/213 (73%), Gaps = 5/213 (2%)

Query  7    NPVLILTIILTFGIAPFVALMVTSYTKLVIVFGLLRAALGLQQVPPNMVLNGIAIILTAY  66
            +P+ ++ I++ ++I P++ +M TS+ KL +VF++LR ALG+QQVPPN+ L G+A++L+ +
Sbjct  6    SPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLF  65

Query  67   IMAPIGSDAFDAIKRRadanaafnvndvvtvYDAVS-GPLKEFLVKHTEERNRTFFVQSA  125
            IM+P    ++ A+K R ++          +  D+ + +P ++FL K++EE++  +F +  
Sbjct  66   IMGP----TLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLI  121

Query  126  KRIWPEGRADDLKSDDMMVLIPSFTLSELTRAFQIGfvvylvfvvvdlivaaillalGMS  185
            KR WPE+    +K+D +++LIP+FT+S+LT+AF+IG+++YL F+ +DL+++ ILLA+GM 
Sbjct  122  KRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMM  181

Query  186  MVAPTTISVPFKLLLFVMLEGWTQLIQGLVLSY  218
            MV+P TIS+PFKLL+F++  GW   +  LV S+
Sbjct  182  MVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

283) fliP in NC_010067


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  122 bits (445),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 131/202 (65%), Gaps = 13/202 (6%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L++LP I++M TSF ++ +VF++LRNALG    PPN  L G+AL L++FIM+P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  111  DAYQPF--SEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQGPEAVPMR  168
            +  +P   +   +   E   K+  P R F+ +++ E +   F  L +      PE +  +
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW---PEDIKRK  132

Query  169  I-------LLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPF  221
            I       L+PA+  S+L  AF+IG+ I++PFL IDL+I+++L+A+GMMMV+P TI+LPF
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  222  KLMLFVLVDGWQLLVGSLAQSF  243
            KL++F+L +GW+L ++ L QSF
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSF  214

284) fliP in NC_011149


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  122 bits (445),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 131/202 (65%), Gaps = 13/202 (6%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L++LP I++M TSF ++ +VF++LRNALG    PPN  L G+AL L++FIM+P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  111  DAYQPF--SEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQGPEAVPMR  168
            +  +P   +   +   E   K+  P R F+ +++ E +   F  L +      PE +  +
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW---PEDIKRK  132

Query  169  I-------LLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPF  221
            I       L+PA+  S+L  AF+IG+ I++PFL IDL+I+++L+A+GMMMV+P TI+LPF
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  222  KLMLFVLVDGWQLLVGSLAQSF  243
            KL++F+L +GW+L ++ L QSF
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSF  214

285) fliP in NC_021844


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  122 bits (446),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 131/202 (65%), Gaps = 13/202 (6%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L++LP I++M TSF ++ +VF++LRNALG    PPN  L G+AL L++FIM+P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  111  DAYQPF--SEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQGPEAVPMR  168
            +  +P   +   +   E   K+  P R F+ +++ E +   F  L +      PE +  +
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW---PEDIKRK  132

Query  169  I-------LLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPF  221
            I       L+PA+  S+L  AF+IG+ I++PFL IDL+I+++L+A+GMMMV+P TI+LPF
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  222  KLMLFVLVDGWQLLVGSLAQSF  243
            KL++F+L +GW+L ++ L QSF
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSF  214

286) SBOV20391 in NC_022241


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  122 bits (445),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 131/202 (65%), Gaps = 13/202 (6%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L++LP I++M TSF ++ +VF++LRNALG    PPN  L G+AL L++FIM+P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  111  DAYQPF--SEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQGPEAVPMR  168
            +  +P   +   +   E   K+  P R F+ +++ E +   F  L +      PE +  +
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW---PEDIKRK  132

Query  169  I-------LLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPF  221
            I       L+PA+  S+L  AF+IG+ I++PFL IDL+I+++L+A+GMMMV+P TI+LPF
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  222  KLMLFVLVDGWQLLVGSLAQSF  243
            KL++F+L +GW+L ++ L QSF
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSF  214

287) fliP in NC_006905


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  122 bits (445),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 131/202 (65%), Gaps = 13/202 (6%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L++LP I++M TSF ++ +VF++LRNALG    PPN  L G+AL L++FIM+P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  111  DAYQPF--SEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQGPEAVPMR  168
            +  +P   +   +   E   K+  P R F+ +++ E +   F  L +      PE +  +
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW---PEDIKRK  132

Query  169  I-------LLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPF  221
            I       L+PA+  S+L  AF+IG+ I++PFL IDL+I+++L+A+GMMMV+P TI+LPF
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  222  KLMLFVLVDGWQLLVGSLAQSF  243
            KL++F+L +GW+L ++ L QSF
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSF  214

288) fliP in NC_021818


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  122 bits (445),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 131/202 (65%), Gaps = 13/202 (6%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L++LP I++M TSF ++ +VF++LRNALG    PPN  L G+AL L++FIM+P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  111  DAYQPF--SEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQGPEAVPMR  168
            +  +P   +   +   E   K+  P R F+ +++ E +   F  L +      PE +  +
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW---PEDIKRK  132

Query  169  I-------LLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPF  221
            I       L+PA+  S+L  AF+IG+ I++PFL IDL+I+++L+A+GMMMV+P TI+LPF
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  222  KLMLFVLVDGWQLLVGSLAQSF  243
            KL++F+L +GW+L ++ L QSF
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSF  214

289) fliP in NC_011205


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  122 bits (445),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 131/202 (65%), Gaps = 13/202 (6%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L++LP I++M TSF ++ +VF++LRNALG    PPN  L G+AL L++FIM+P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  111  DAYQPF--SEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQGPEAVPMR  168
            +  +P   +   +   E   K+  P R F+ +++ E +   F  L +      PE +  +
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW---PEDIKRK  132

Query  169  I-------LLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPF  221
            I       L+PA+  S+L  AF+IG+ I++PFL IDL+I+++L+A+GMMMV+P TI+LPF
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  222  KLMLFVLVDGWQLLVGSLAQSF  243
            KL++F+L +GW+L ++ L QSF
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSF  214

290) fliP in NC_011294


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  122 bits (445),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 131/202 (65%), Gaps = 13/202 (6%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L++LP I++M TSF ++ +VF++LRNALG    PPN  L G+AL L++FIM+P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  111  DAYQPF--SEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQGPEAVPMR  168
            +  +P   +   +   E   K+  P R F+ +++ E +   F  L +      PE +  +
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW---PEDIKRK  132

Query  169  I-------LLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPF  221
            I       L+PA+  S+L  AF+IG+ I++PFL IDL+I+++L+A+GMMMV+P TI+LPF
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  222  KLMLFVLVDGWQLLVGSLAQSF  243
            KL++F+L +GW+L ++ L QSF
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSF  214

291) fliP in NC_011274


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  122 bits (445),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 131/202 (65%), Gaps = 13/202 (6%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L++LP I++M TSF ++ +VF++LRNALG    PPN  L G+AL L++FIM+P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  111  DAYQPF--SEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQGPEAVPMR  168
            +  +P   +   +   E   K+  P R F+ +++ E +   F  L +      PE +  +
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW---PEDIKRK  132

Query  169  I-------LLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPF  221
            I       L+PA+  S+L  AF+IG+ I++PFL IDL+I+++L+A+GMMMV+P TI+LPF
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  222  KLMLFVLVDGWQLLVGSLAQSF  243
            KL++F+L +GW+L ++ L QSF
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSF  214

292) fliP in NC_022221


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  122 bits (445),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 131/202 (65%), Gaps = 13/202 (6%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L++LP I++M TSF ++ +VF++LRNALG    PPN  L G+AL L++FIM+P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  111  DAYQPF--SEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQGPEAVPMR  168
            +  +P   +   +   E   K+  P R F+ +++ E +   F  L +      PE +  +
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW---PEDIKRK  132

Query  169  I-------LLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPF  221
            I       L+PA+  S+L  AF+IG+ I++PFL IDL+I+++L+A+GMMMV+P TI+LPF
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  222  KLMLFVLVDGWQLLVGSLAQSF  243
            KL++F+L +GW+L ++ L QSF
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSF  214

293) fliP in NC_016831


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  122 bits (445),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 131/202 (65%), Gaps = 13/202 (6%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L++LP I++M TSF ++ +VF++LRNALG    PPN  L G+AL L++FIM+P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  111  DAYQPF--SEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQGPEAVPMR  168
            +  +P   +   +   E   K+  P R F+ +++ E +   F  L +      PE +  +
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW---PEDIKRK  132

Query  169  I-------LLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPF  221
            I       L+PA+  S+L  AF+IG+ I++PFL IDL+I+++L+A+GMMMV+P TI+LPF
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  222  KLMLFVLVDGWQLLVGSLAQSF  243
            KL++F+L +GW+L ++ L QSF
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSF  214

294) fliP in NC_020307


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  122 bits (445),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 131/202 (65%), Gaps = 13/202 (6%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L++LP I++M TSF ++ +VF++LRNALG    PPN  L G+AL L++FIM+P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  111  DAYQPF--SEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQGPEAVPMR  168
            +  +P   +   +   E   K+  P R F+ +++ E +   F  L +      PE +  +
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW---PEDIKRK  132

Query  169  I-------LLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPF  221
            I       L+PA+  S+L  AF+IG+ I++PFL IDL+I+++L+A+GMMMV+P TI+LPF
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  222  KLMLFVLVDGWQLLVGSLAQSF  243
            KL++F+L +GW+L ++ L QSF
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSF  214

295) fliP in NC_011080


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  122 bits (445),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 131/202 (65%), Gaps = 13/202 (6%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L++LP I++M TSF ++ +VF++LRNALG    PPN  L G+AL L++FIM+P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  111  DAYQPF--SEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQGPEAVPMR  168
            +  +P   +   +   E   K+  P R F+ +++ E +   F  L +      PE +  +
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW---PEDIKRK  132

Query  169  I-------LLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPF  221
            I       L+PA+  S+L  AF+IG+ I++PFL IDL+I+++L+A+GMMMV+P TI+LPF
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  222  KLMLFVLVDGWQLLVGSLAQSF  243
            KL++F+L +GW+L ++ L QSF
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSF  214

296) SN31241_30780 in NC_021902


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  122 bits (445),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 131/202 (65%), Gaps = 13/202 (6%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L++LP I++M TSF ++ +VF++LRNALG    PPN  L G+AL L++FIM+P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  111  DAYQPF--SEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQGPEAVPMR  168
            +  +P   +   +   E   K+  P R F+ +++ E +   F  L +      PE +  +
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW---PEDIKRK  132

Query  169  I-------LLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPF  221
            I       L+PA+  S+L  AF+IG+ I++PFL IDL+I+++L+A+GMMMV+P TI+LPF
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  222  KLMLFVLVDGWQLLVGSLAQSF  243
            KL++F+L +GW+L ++ L QSF
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSF  214

297) fliP in NC_010102


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  122 bits (446),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 131/202 (65%), Gaps = 13/202 (6%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L++LP I++M TSF ++ +VF++LRNALG    PPN  L G+AL L++FIM+P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  111  DAYQPF--SEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQGPEAVPMR  168
            +  +P   +   +   E   K+  P R F+ +++ E +   F  L +      PE +  +
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW---PEDIKRK  132

Query  169  I-------LLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPF  221
            I       L+PA+  S+L  AF+IG+ I++PFL IDL+I+++L+A+GMMMV+P TI+LPF
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  222  KLMLFVLVDGWQLLVGSLAQSF  243
            KL++F+L +GW+L ++ L QSF
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSF  214

298) fliP in NC_012125


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  122 bits (445),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 131/202 (65%), Gaps = 13/202 (6%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L++LP I++M TSF ++ +VF++LRNALG    PPN  L G+AL L++FIM+P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  111  DAYQPF--SEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQGPEAVPMR  168
            +  +P   +   +   E   K+  P R F+ +++ E +   F  L +      PE +  +
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW---PEDIKRK  132

Query  169  I-------LLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPF  221
            I       L+PA+  S+L  AF+IG+ I++PFL IDL+I+++L+A+GMMMV+P TI+LPF
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  222  KLMLFVLVDGWQLLVGSLAQSF  243
            KL++F+L +GW+L ++ L QSF
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSF  214

299) fliP in NC_021984


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  122 bits (445),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 131/202 (65%), Gaps = 13/202 (6%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L++LP I++M TSF ++ +VF++LRNALG    PPN  L G+AL L++FIM+P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  111  DAYQPF--SEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQGPEAVPMR  168
            +  +P   +   +   E   K+  P R F+ +++ E +   F  L +      PE +  +
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW---PEDIKRK  132

Query  169  I-------LLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPF  221
            I       L+PA+  S+L  AF+IG+ I++PFL IDL+I+++L+A+GMMMV+P TI+LPF
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  222  KLMLFVLVDGWQLLVGSLAQSF  243
            KL++F+L +GW+L ++ L QSF
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSF  214

300) fliP in NC_011094


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  122 bits (445),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 131/202 (65%), Gaps = 13/202 (6%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L++LP I++M TSF ++ +VF++LRNALG    PPN  L G+AL L++FIM+P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  111  DAYQPF--SEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQGPEAVPMR  168
            +  +P   +   +   E   K+  P R F+ +++ E +   F  L +      PE +  +
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW---PEDIKRK  132

Query  169  I-------LLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPF  221
            I       L+PA+  S+L  AF+IG+ I++PFL IDL+I+++L+A+GMMMV+P TI+LPF
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  222  KLMLFVLVDGWQLLVGSLAQSF  243
            KL++F+L +GW+L ++ L QSF
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSF  214

301) STY2187 in NC_003198


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  122 bits (445),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 131/202 (65%), Gaps = 13/202 (6%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L++LP I++M TSF ++ +VF++LRNALG    PPN  L G+AL L++FIM+P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  111  DAYQPF--SEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQGPEAVPMR  168
            +  +P   +   +   E   K+  P R F+ +++ E +   F  L +      PE +  +
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW---PEDIKRK  132

Query  169  I-------LLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPF  221
            I       L+PA+  S+L  AF+IG+ I++PFL IDL+I+++L+A+GMMMV+P TI+LPF
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  222  KLMLFVLVDGWQLLVGSLAQSF  243
            KL++F+L +GW+L ++ L QSF
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSF  214

302) STBHUCCB_9660 in NC_016832


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  122 bits (445),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 131/202 (65%), Gaps = 13/202 (6%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L++LP I++M TSF ++ +VF++LRNALG    PPN  L G+AL L++FIM+P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  111  DAYQPF--SEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQGPEAVPMR  168
            +  +P   +   +   E   K+  P R F+ +++ E +   F  L +      PE +  +
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW---PEDIKRK  132

Query  169  I-------LLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPF  221
            I       L+PA+  S+L  AF+IG+ I++PFL IDL+I+++L+A+GMMMV+P TI+LPF
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  222  KLMLFVLVDGWQLLVGSLAQSF  243
            KL++F+L +GW+L ++ L QSF
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSF  214

303) fliP in NC_021176


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  122 bits (445),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 131/202 (65%), Gaps = 13/202 (6%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L++LP I++M TSF ++ +VF++LRNALG    PPN  L G+AL L++FIM+P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  111  DAYQPF--SEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQGPEAVPMR  168
            +  +P   +   +   E   K+  P R F+ +++ E +   F  L +      PE +  +
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW---PEDIKRK  132

Query  169  I-------LLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPF  221
            I       L+PA+  S+L  AF+IG+ I++PFL IDL+I+++L+A+GMMMV+P TI+LPF
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  222  KLMLFVLVDGWQLLVGSLAQSF  243
            KL++F+L +GW+L ++ L QSF
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSF  214

304) fliP in NC_004631


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  122 bits (445),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 131/202 (65%), Gaps = 13/202 (6%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L++LP I++M TSF ++ +VF++LRNALG    PPN  L G+AL L++FIM+P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  111  DAYQPF--SEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQGPEAVPMR  168
            +  +P   +   +   E   K+  P R F+ +++ E +   F  L +      PE +  +
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW---PEDIKRK  132

Query  169  I-------LLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPF  221
            I       L+PA+  S+L  AF+IG+ I++PFL IDL+I+++L+A+GMMMV+P TI+LPF
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  222  KLMLFVLVDGWQLLVGSLAQSF  243
            KL++F+L +GW+L ++ L QSF
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSF  214

305) fliP in NC_022347


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  121 bits (443),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 99/226 (44%), Positives = 160/226 (71%), Gaps = 23/226 (10%)

Query  31   LSAPDTPNQLVTTLNIVIVLTILALAPSIIFVMTSFLRLIVVFSFLRQAMGTQSMPPNTI  90
            +S PD+P QL+    I+++L+IL+L   II + TSFL+L VVFS+LR+A+G Q +PPN  
Sbjct  1    MSLPDSPLQLI---GILFLLSILPL---IIVMGTSFLKLAVVFSILRNALGIQQVPPNIA  54

Query  91   LVTLALILTFFIMEP--VATKSYNEGIK----PYLAEQIGYEEAFARGVKPFKDFMLKNT  144
            L  +AL+L++FIM P  +A K   + ++    P+ + + +     ++++ P+++F+ KN+
Sbjct  55   LYGFALVLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWD-----SKALAPYRQFLQKNS  109

Query  145  REKDLALFYRI---RNLPNP--KTIDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVID  199
             EK+ A ++R    R  P+   + I   +L +L+PAF +S+L  AF IG+LIYLPFL ID
Sbjct  110  EEKE-ANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAID  168

Query  200  mvvssvlmamgmmmlppvmISLPFKLLIFVLVDGWNLLVQRLVESF  245
            +++S++L+AMGMMM++P+ ISLPFKLLIF+L +GW+L + +LV+SF
Sbjct  169  LLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

306) BN865_13040 in NC_022132


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  121 bits (442),  Expect = 4e-29, Method: Compositional matrix adjust.
 Identities = 98/226 (44%), Positives = 160/226 (71%), Gaps = 23/226 (10%)

Query  31   LSAPDTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTI  90
            +S PD+P QL+    I+++L+IL+L   I+ + TSFL+L VVFS+LR+A+G Q +PPN  
Sbjct  1    MSLPDSPLQLI---GILFLLSILPL---IIVMGTSFLKLAVVFSILRNALGIQQVPPNIA  54

Query  91   LVTLALILTFFIMEP--VATKSYNEGIK----PYLAEQIGYEEAFARGVKPFKDFMLKNT  144
            L  +AL+L++FIM P  +A K   + ++    P+ + + +     ++++ P+++F+ KN+
Sbjct  55   LYGFALVLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWD-----SKALAPYRQFLQKNS  109

Query  145  REKDLALFYRI---RNLPNP--KTIDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVID  199
             EK+ A ++R    R  P+   + I   +L +L+PAF +S+L  AF IG+LIYLPFL ID
Sbjct  110  EEKE-ANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAID  168

Query  200  mvvssvlmamgmmmlppvmISLPFKLLIFVLVDGWNLLVQRLVESF  245
            +++S++L+AMGMMM++P+ ISLPFKLLIF+L +GW+L + +LV+SF
Sbjct  169  LLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

307) Tlie_0100 in NC_016148


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  121 bits (441),  Expect = 5e-29, Method: Compositional matrix adjust.
 Identities = 80/192 (42%), Positives = 135/192 (71%), Gaps = 11/192 (5%)

Query  71   MVTSFTRILVVLGFLRSAIGVQQLPPNQVIVTLAIFLTLFIMRPVWEEVYKEAYIPLQ--  128
            M TSF ++ VV+++LR+A+G+QQ+PPN  +  +A+ L+LFIM P    V KE   P+Q  
Sbjct  26   MGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-KERWHPVQVA  84

Query  129  EGQITTQEAMDRTLKPVREFMLSQTKEKELSLMISL------SDLERPNTPEDVPTLVLL  182
             + + T E   ++L P R+F+  ++ EKE +   +L       D+ R   P+ +  L+L+
Sbjct  85   GAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSL--LILI  142

Query  183  PAFMLSELKTAFQMGVVLFVPFLVIDMIVSSVLMSMGMIMLPPMLVSLPFKVLLFVLADG  242
            PAF +S+L  AF++G+++++PFL ID+++S++L++MGM+M++PM +SLPFK+L+F+LA+G
Sbjct  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202

Query  243  WDLVIVSLVKSF  254
            WDL +  LV+SF
Sbjct  203  WDLTLAQLVQSF  214

308) fliP in NC_015761


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  120 bits (440),  Expect = 5e-29, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 131/202 (65%), Gaps = 13/202 (6%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L++LP I++M TSF ++ +VF++LRNALG    PPN  L G+AL L++FIM+P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  111  DAYQPF--SEQKISMQEALEKGAQPLRAFMLRQTREADLALFARLANSGPLQGPEAVPMR  168
            +  +P   +   +   E   K+  P R F+ +++ E +   F  L +      PE +  +
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW---PEDIKRK  132

Query  169  I-------LLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPF  221
            I       L+PA+  S+L  AF+IG+ I++PFL IDL+I+++L+A+GMMMV+P TI+LPF
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  222  KLMLFVLVDGWQLLVGSLAQSF  243
            KL++F+L +GW+L ++ L QSF
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSF  214

309) A464_2127 in NC_021870


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  120 bits (440),  Expect = 5e-29, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 131/202 (65%), Gaps = 13/202 (6%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L++LP I++M TSF ++ +VF++LRNALG    PPN  L G+AL L++FIM+P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  111  DAYQPF--SEQKISMQEALEKGAQPLRAFMLRQTREADLALFARLANSGPLQGPEAVPMR  168
            +  +P   +   +   E   K+  P R F+ +++ E +   F  L +      PE +  +
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW---PEDIKRK  132

Query  169  I-------LLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPF  221
            I       L+PA+  S+L  AF+IG+ I++PFL IDL+I+++L+A+GMMMV+P TI+LPF
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  222  KLMLFVLVDGWQLLVGSLAQSF  243
            KL++F+L +GW+L ++ L QSF
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSF  214

310) fliP in NC_021810


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  120 bits (439),  Expect = 6e-29, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 131/202 (65%), Gaps = 13/202 (6%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L++LP I++M TSF ++ +VF++LRNALG    PPN  L G+AL L++FIM+P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  111  DAYQPF--SEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQGPEAVPMR  168
            +  +P   +   +   E   K+  P R F+ +++ E +   F  L +      PE +  +
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW---PEDIKRK  132

Query  169  I-------LLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPF  221
            I       L+PA+  S+L  AF+IG+ I++PFL IDL+I+++L+A+GMMMV+P TI+LPF
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  222  KLMLFVLVDGWQLLVGSLAQSF  243
            KL++F+L +GW+L ++ L QSF
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSF  214

311) SU5_02582 in NC_017623


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  120 bits (439),  Expect = 6e-29, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 131/202 (65%), Gaps = 13/202 (6%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L++LP I++M TSF ++ +VF++LRNALG    PPN  L G+AL L++FIM+P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  111  DAYQPF--SEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQGPEAVPMR  168
            +  +P   +   +   E   K+  P R F+ +++ E +   F  L +      PE +  +
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW---PEDIKRK  132

Query  169  I-------LLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPF  221
            I       L+PA+  S+L  AF+IG+ I++PFL IDL+I+++L+A+GMMMV+P TI+LPF
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  222  KLMLFVLVDGWQLLVGSLAQSF  243
            KL++F+L +GW+L ++ L QSF
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSF  214

312) fliP in NC_021812


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  120 bits (439),  Expect = 6e-29, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 131/202 (65%), Gaps = 13/202 (6%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L++LP I++M TSF ++ +VF++LRNALG    PPN  L G+AL L++FIM+P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  111  DAYQPF--SEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQGPEAVPMR  168
            +  +P   +   +   E   K+  P R F+ +++ E +   F  L +      PE +  +
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW---PEDIKRK  132

Query  169  I-------LLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPF  221
            I       L+PA+  S+L  AF+IG+ I++PFL IDL+I+++L+A+GMMMV+P TI+LPF
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  222  KLMLFVLVDGWQLLVGSLAQSF  243
            KL++F+L +GW+L ++ L QSF
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSF  214

313) fliP in NC_011083


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  120 bits (439),  Expect = 6e-29, Method: Compositional matrix adjust.
 Identities = 81/202 (41%), Positives = 131/202 (65%), Gaps = 13/202 (6%)

Query  51   LTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYV  110
            L++LP I++M TSF ++ +VF++LRNALG    PPN  L G+AL L++FIM+P +  +  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  111  DAYQPF--SEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQGPEAVPMR  168
            +  +P   +   +   E   K+  P R F+ +++ E +   F  L +      PE +  +
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW---PEDIKRK  132

Query  169  I-------LLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPF  221
            I       L+PA+  S+L  AF+IG+ I++PFL IDL+I+++L+A+GMMMV+P TI+LPF
Sbjct  133  IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF  192

Query  222  KLMLFVLVDGWQLLVGSLAQSF  243
            KL++F+L +GW+L ++ L QSF
Sbjct  193  KLLIFLLAGGWDLTLAQLVQSF  214

314) Desaf_1174 in NC_016629


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  120 bits (438),  Expect = 9e-29, Method: Compositional matrix adjust.
 Identities = 79/197 (41%), Positives = 137/197 (70%), Gaps = 9/197 (4%)

Query  73   PAIIMTMTSFTRIIIVFHFLRQALGTQQMPPSQILISLAIFMTFVIMMPTAMAINNTALQ  132
            P II+  TSF ++ +VF +LR+ALG QQ+PP+  L ++A+ +++ IM PT +A+++   +
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKER-WH  79

Query  133  PYMEERIGFKEALDNAQKPL---REFMFKHTREKDLSVFYSIAKIERPDN--REQVPT--  185
            P       F  + +   K+L   R+F+ K++ EK+ + F ++ K  +P++  R   P   
Sbjct  80   PVQVAGAPFWTS-EWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSL  138

Query  186  MLLTAAFVISELKTGFIIGFLIYIPFLILDMVVASILLAMGMMMLPPVMISLPFKVLLFV  245
            ++L +AF +S+L  +F IG+LIY+PFL +D+++++ILLAMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  246  MVDGWNLLTASLVNSFA  262
            + +GW+L  A LV+SF+
Sbjct  199  LAGGWDLTLAQLVQSFS  215

315) fliP in NC_009707


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  119 bits (433),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 98/226 (44%), Positives = 157/226 (70%), Gaps = 23/226 (10%)

Query  28   LSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTI  87
            +S P++P QL+    I+++L+IL+L   I+ + TSFL+L VVFS+LR+A+G Q +PPN  
Sbjct  1    MSLPDSPLQLI---GILFLLSILPL---IIVMGTSFLKLAVVFSILRNALGIQQVPPNIA  54

Query  88   LVTLALILTFFIMEP--VATKSYNEGIK----PYLAEQIGYEEAFIKGTKPFKDFMLKNT  141
            L  +AL+L++FIM P  +A K   + ++    P+ + +   +    K+  P+++F+ KN+
Sbjct  55   LYGFALVLSLFIMGPTLLAVKERWHPVQVAGAPFWTSE--WDS---KALAPYRQFLQKNS  109

Query  142  REKDLALFYRI---RNLPNP--KTIDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVID  196
             EK+ A ++R    R  P+   + I   +L +L+PAF +S+L  AF IG+LIYLPFL ID
Sbjct  110  EEKE-ANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAID  168

Query  197  mvvssvlmamgmmmlpptmISLPFKLLIFVLVDGWNLLVQRLVESF  242
            +++S++L+AMGMMM++P  ISLPFKLLIF+L +GW+L + +LV+SF
Sbjct  169  LLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

316) fliP in NC_022352


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  118 bits (430),  Expect = 3e-28, Method: Compositional matrix adjust.
 Identities = 98/226 (44%), Positives = 156/226 (70%), Gaps = 23/226 (10%)

Query  17   LSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTI  76
            +S P++P QL+    I+++L+IL+L   I+ + TSFL+L VVFS+LR+A+G Q +PPN  
Sbjct  1    MSLPDSPLQLI---GILFLLSILPL---IIVMGTSFLKLAVVFSILRNALGIQQVPPNIA  54

Query  77   LVTLALILTFFIMEP--VATKSYNEGIK----PYLAEKIGYEEAFIKGAKPFKDFMLKNT  130
            L  +AL+L++FIM P  +A K   + ++    P+ +     +    K+  P+++F+ KN+
Sbjct  55   LYGFALVLSLFIMGPTLLAVKERWHPVQVAGAPFWTS--EWDS---KALAPYRQFLQKNS  109

Query  131  REKDLALFYRI---RNLPNP--KTIDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVID  185
             EK+ A ++R    R  P+   + I   +L +L+PAF +S+L  AF IG+LIYLPFL ID
Sbjct  110  EEKE-ANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAID  168

Query  186  mvvssvlmamgmmmlpptmISLPFKLLIFVLVDGWNLLVQRLVESF  231
            +++S++L+AMGMMM++P  ISLPFKLLIF+L +GW+L + +LV+SF
Sbjct  169  LLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

317) fliP in NC_008787


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  118 bits (430),  Expect = 3e-28, Method: Compositional matrix adjust.
 Identities = 98/226 (44%), Positives = 156/226 (70%), Gaps = 23/226 (10%)

Query  28   LSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTI  87
            +S P++P QL+    I+++L+IL+L   I+ + TSFL+L VVFS+LR+A+G Q +PPN  
Sbjct  1    MSLPDSPLQLI---GILFLLSILPL---IIVMGTSFLKLAVVFSILRNALGIQQVPPNIA  54

Query  88   LVTLALILTFFIMEP--VATKSYNEGIK----PYLSEKIGYEEAFIKGAKPFKDFMLKNT  141
            L  +AL+L++FIM P  +A K   + ++    P+ +     +    K+  P+++F+ KN+
Sbjct  55   LYGFALVLSLFIMGPTLLAVKERWHPVQVAGAPFWTS--EWDS---KALAPYRQFLQKNS  109

Query  142  REKDLALFYRI---RNLPNP--KTIDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVID  196
             EK+ A ++R    R  P+   + I   +L +L+PAF +S+L  AF IG+LIYLPFL ID
Sbjct  110  EEKE-ANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAID  168

Query  197  mvvssvlmamgmmmlpptmISLPFKLLIFVLVDGWNLLVQRLVESF  242
            +++S++L+AMGMMM++P  ISLPFKLLIF+L +GW+L + +LV+SF
Sbjct  169  LLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

318) ICDCCJ07001_789 in NC_014802


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  118 bits (430),  Expect = 3e-28, Method: Compositional matrix adjust.
 Identities = 98/226 (44%), Positives = 156/226 (70%), Gaps = 23/226 (10%)

Query  14   LSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTI  73
            +S P++P QL+    I+++L+IL+L   I+ + TSFL+L VVFS+LR+A+G Q +PPN  
Sbjct  1    MSLPDSPLQLI---GILFLLSILPL---IIVMGTSFLKLAVVFSILRNALGIQQVPPNIA  54

Query  74   LVTLALILTFFIMEP--VATKSYNEGIK----PYLAEKIGYEEAFIKGAKPFKDFMLKNT  127
            L  +AL+L++FIM P  +A K   + ++    P+ +     +    K+  P+++F+ KN+
Sbjct  55   LYGFALVLSLFIMGPTLLAVKERWHPVQVAGAPFWTS--EWDS---KALAPYRQFLQKNS  109

Query  128  REKDLALFYRI---RNLPNP--KTIDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVID  182
             EK+ A ++R    R  P+   + I   +L +L+PAF +S+L  AF IG+LIYLPFL ID
Sbjct  110  EEKE-ANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAID  168

Query  183  mvvssvlmamgmmmlpptmISLPFKLLIFVLVDGWNLLVQRLVESF  228
            +++S++L+AMGMMM++P  ISLPFKLLIF+L +GW+L + +LV+SF
Sbjct  169  LLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

319) fliP in NC_022362


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  118 bits (429),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 98/226 (44%), Positives = 156/226 (70%), Gaps = 23/226 (10%)

Query  28   LSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTI  87
            +S P++P QL+    I+++L+IL+L   I+ + TSFL+L VVFS+LR+A+G Q +PPN  
Sbjct  1    MSLPDSPLQLI---GILFLLSILPL---IIVMGTSFLKLAVVFSILRNALGIQQVPPNIA  54

Query  88   LVTLALILTFFIMEP--VATKSYNEGIK----PYLAEKIGYEEAFIKGAKPFKDFMLKNT  141
            L  +AL+L++FIM P  +A K   + ++    P+ +     +    K+  P+++F+ KN+
Sbjct  55   LYGFALVLSLFIMGPTLLAVKERWHPVQVAGAPFWTS--EWDS---KALAPYRQFLQKNS  109

Query  142  REKDLALFYRI---RNLPNP--KTIDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVID  196
             EK+ A ++R    R  P+   + I   +L +L+PAF +S+L  AF IG+LIYLPFL ID
Sbjct  110  EEKE-ANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAID  168

Query  197  mvvssvlmamgmmmlpptmISLPFKLLIFVLVDGWNLLVQRLVESF  242
            +++S++L+AMGMMM++P  ISLPFKLLIF+L +GW+L + +LV+SF
Sbjct  169  LLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

320) fliP in NC_022351


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  118 bits (429),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 98/226 (44%), Positives = 156/226 (70%), Gaps = 23/226 (10%)

Query  28   LSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTI  87
            +S P++P QL+    I+++L+IL+L   I+ + TSFL+L VVFS+LR+A+G Q +PPN  
Sbjct  1    MSLPDSPLQLI---GILFLLSILPL---IIVMGTSFLKLAVVFSILRNALGIQQVPPNIA  54

Query  88   LVTLALILTFFIMEP--VATKSYNEGIK----PYLAEKIGYEEAFIKGAKPFKDFMLKNT  141
            L  +AL+L++FIM P  +A K   + ++    P+ +     +    K+  P+++F+ KN+
Sbjct  55   LYGFALVLSLFIMGPTLLAVKERWHPVQVAGAPFWTS--EWDS---KALAPYRQFLQKNS  109

Query  142  REKDLALFYRI---RNLPNP--KTIDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVID  196
             EK+ A ++R    R  P+   + I   +L +L+PAF +S+L  AF IG+LIYLPFL ID
Sbjct  110  EEKE-ANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAID  168

Query  197  mvvssvlmamgmmmlpptmISLPFKLLIFVLVDGWNLLVQRLVESF  242
            +++S++L+AMGMMM++P  ISLPFKLLIF+L +GW+L + +LV+SF
Sbjct  169  LLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

321) fliP in NC_022353


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  118 bits (429),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 98/226 (44%), Positives = 156/226 (70%), Gaps = 23/226 (10%)

Query  28   LSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTI  87
            +S P++P QL+    I+++L+IL+L   I+ + TSFL+L VVFS+LR+A+G Q +PPN  
Sbjct  1    MSLPDSPLQLI---GILFLLSILPL---IIVMGTSFLKLAVVFSILRNALGIQQVPPNIA  54

Query  88   LVTLALILTFFIMEP--VATKSYNEGIK----PYLAEKIGYEEAFIKGAKPFKDFMLKNT  141
            L  +AL+L++FIM P  +A K   + ++    P+ +     +    K+  P+++F+ KN+
Sbjct  55   LYGFALVLSLFIMGPTLLAVKERWHPVQVAGAPFWTS--EWDS---KALAPYRQFLQKNS  109

Query  142  REKDLALFYRI---RNLPNP--KTIDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVID  196
             EK+ A ++R    R  P+   + I   +L +L+PAF +S+L  AF IG+LIYLPFL ID
Sbjct  110  EEKE-ANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAID  168

Query  197  mvvssvlmamgmmmlpptmISLPFKLLIFVLVDGWNLLVQRLVESF  242
            +++S++L+AMGMMM++P  ISLPFKLLIF+L +GW+L + +LV+SF
Sbjct  169  LLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

322) M635_08385 in NC_021834


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  118 bits (429),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 98/226 (44%), Positives = 156/226 (70%), Gaps = 23/226 (10%)

Query  28   LSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTI  87
            +S P++P QL+    I+++L+IL+L   I+ + TSFL+L VVFS+LR+A+G Q +PPN  
Sbjct  1    MSLPDSPLQLI---GILFLLSILPL---IIVMGTSFLKLAVVFSILRNALGIQQVPPNIA  54

Query  88   LVTLALILTFFIMEP--VATKSYNEGIK----PYLAEKIGYEEAFIKGAKPFKDFMLKNT  141
            L  +AL+L++FIM P  +A K   + ++    P+ +     +    K+  P+++F+ KN+
Sbjct  55   LYGFALVLSLFIMGPTLLAVKERWHPVQVAGAPFWTS--EWDS---KALAPYRQFLQKNS  109

Query  142  REKDLALFYRI---RNLPNP--KTIDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVID  196
             EK+ A ++R    R  P+   + I   +L +L+PAF +S+L  AF IG+LIYLPFL ID
Sbjct  110  EEKE-ANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAID  168

Query  197  mvvssvlmamgmmmlpptmISLPFKLLIFVLVDGWNLLVQRLVESF  242
            +++S++L+AMGMMM++P  ISLPFKLLIF+L +GW+L + +LV+SF
Sbjct  169  LLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

323) fliP in NC_009839


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  118 bits (429),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 98/226 (44%), Positives = 156/226 (70%), Gaps = 23/226 (10%)

Query  28   LSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTI  87
            +S P++P QL+    I+++L+IL+L   I+ + TSFL+L VVFS+LR+A+G Q +PPN  
Sbjct  1    MSLPDSPLQLI---GILFLLSILPL---IIVMGTSFLKLAVVFSILRNALGIQQVPPNIA  54

Query  88   LVTLALILTFFIMEP--VATKSYNEGIK----PYLAEKIGYEEAFIKGAKPFKDFMLKNT  141
            L  +AL+L++FIM P  +A K   + ++    P+ +     +    K+  P+++F+ KN+
Sbjct  55   LYGFALVLSLFIMGPTLLAVKERWHPVQVAGAPFWTS--EWDS---KALAPYRQFLQKNS  109

Query  142  REKDLALFYRI---RNLPNP--KTIDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVID  196
             EK+ A ++R    R  P+   + I   +L +L+PAF +S+L  AF IG+LIYLPFL ID
Sbjct  110  EEKE-ANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAID  168

Query  197  mvvssvlmamgmmmlpptmISLPFKLLIFVLVDGWNLLVQRLVESF  242
            +++S++L+AMGMMM++P  ISLPFKLLIF+L +GW+L + +LV+SF
Sbjct  169  LLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

324) fliP in NC_017279


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  118 bits (429),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 98/226 (44%), Positives = 156/226 (70%), Gaps = 23/226 (10%)

Query  28   LSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTI  87
            +S P++P QL+    I+++L+IL+L   I+ + TSFL+L VVFS+LR+A+G Q +PPN  
Sbjct  1    MSLPDSPLQLI---GILFLLSILPL---IIVMGTSFLKLAVVFSILRNALGIQQVPPNIA  54

Query  88   LVTLALILTFFIMEP--VATKSYNEGIK----PYLAEKIGYEEAFIKGAKPFKDFMLKNT  141
            L  +AL+L++FIM P  +A K   + ++    P+ +     +    K+  P+++F+ KN+
Sbjct  55   LYGFALVLSLFIMGPTLLAVKERWHPVQVAGAPFWTS--EWDS---KALAPYRQFLQKNS  109

Query  142  REKDLALFYRI---RNLPNP--KTIDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVID  196
             EK+ A ++R    R  P+   + I   +L +L+PAF +S+L  AF IG+LIYLPFL ID
Sbjct  110  EEKE-ANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAID  168

Query  197  mvvssvlmamgmmmlpptmISLPFKLLIFVLVDGWNLLVQRLVESF  242
            +++S++L+AMGMMM++P  ISLPFKLLIF+L +GW+L + +LV+SF
Sbjct  169  LLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

325) fliP in NC_017280


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  118 bits (429),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 98/226 (44%), Positives = 156/226 (70%), Gaps = 23/226 (10%)

Query  28   LSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTI  87
            +S P++P QL+    I+++L+IL+L   I+ + TSFL+L VVFS+LR+A+G Q +PPN  
Sbjct  1    MSLPDSPLQLI---GILFLLSILPL---IIVMGTSFLKLAVVFSILRNALGIQQVPPNIA  54

Query  88   LVTLALILTFFIMEP--VATKSYNEGIK----PYLAEKIGYEEAFIKGAKPFKDFMLKNT  141
            L  +AL+L++FIM P  +A K   + ++    P+ +     +    K+  P+++F+ KN+
Sbjct  55   LYGFALVLSLFIMGPTLLAVKERWHPVQVAGAPFWTS--EWDS---KALAPYRQFLQKNS  109

Query  142  REKDLALFYRI---RNLPNP--KTIDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVID  196
             EK+ A ++R    R  P+   + I   +L +L+PAF +S+L  AF IG+LIYLPFL ID
Sbjct  110  EEKE-ANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAID  168

Query  197  mvvssvlmamgmmmlpptmISLPFKLLIFVLVDGWNLLVQRLVESF  242
            +++S++L+AMGMMM++P  ISLPFKLLIF+L +GW+L + +LV+SF
Sbjct  169  LLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

326) fliP in NC_002163


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  118 bits (429),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 98/226 (44%), Positives = 156/226 (70%), Gaps = 23/226 (10%)

Query  28   LSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTI  87
            +S P++P QL+    I+++L+IL+L   I+ + TSFL+L VVFS+LR+A+G Q +PPN  
Sbjct  1    MSLPDSPLQLI---GILFLLSILPL---IIVMGTSFLKLAVVFSILRNALGIQQVPPNIA  54

Query  88   LVTLALILTFFIMEP--VATKSYNEGIK----PYLAEKIGYEEAFIKGAKPFKDFMLKNT  141
            L  +AL+L++FIM P  +A K   + ++    P+ +     +    K+  P+++F+ KN+
Sbjct  55   LYGFALVLSLFIMGPTLLAVKERWHPVQVAGAPFWTS--EWDS---KALAPYRQFLQKNS  109

Query  142  REKDLALFYRI---RNLPNP--KTIDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVID  196
             EK+ A ++R    R  P+   + I   +L +L+PAF +S+L  AF IG+LIYLPFL ID
Sbjct  110  EEKE-ANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAID  168

Query  197  mvvssvlmamgmmmlpptmISLPFKLLIFVLVDGWNLLVQRLVESF  242
            +++S++L+AMGMMM++P  ISLPFKLLIF+L +GW+L + +LV+SF
Sbjct  169  LLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

327) fliP in NC_018521


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  118 bits (429),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 98/226 (44%), Positives = 156/226 (70%), Gaps = 23/226 (10%)

Query  28   LSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTI  87
            +S P++P QL+    I+++L+IL+L   I+ + TSFL+L VVFS+LR+A+G Q +PPN  
Sbjct  1    MSLPDSPLQLI---GILFLLSILPL---IIVMGTSFLKLAVVFSILRNALGIQQVPPNIA  54

Query  88   LVTLALILTFFIMEP--VATKSYNEGIK----PYLAEKIGYEEAFIKGAKPFKDFMLKNT  141
            L  +AL+L++FIM P  +A K   + ++    P+ +     +    K+  P+++F+ KN+
Sbjct  55   LYGFALVLSLFIMGPTLLAVKERWHPVQVAGAPFWTS--EWDS---KALAPYRQFLQKNS  109

Query  142  REKDLALFYRI---RNLPNP--KTIDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVID  196
             EK+ A ++R    R  P+   + I   +L +L+PAF +S+L  AF IG+LIYLPFL ID
Sbjct  110  EEKE-ANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAID  168

Query  197  mvvssvlmamgmmmlpptmISLPFKLLIFVLVDGWNLLVQRLVESF  242
            +++S++L+AMGMMM++P  ISLPFKLLIF+L +GW+L + +LV+SF
Sbjct  169  LLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

328) fliP in NC_018709


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  118 bits (429),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 98/226 (44%), Positives = 156/226 (70%), Gaps = 23/226 (10%)

Query  28   LSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTI  87
            +S P++P QL+    I+++L+IL+L   I+ + TSFL+L VVFS+LR+A+G Q +PPN  
Sbjct  1    MSLPDSPLQLI---GILFLLSILPL---IIVMGTSFLKLAVVFSILRNALGIQQVPPNIA  54

Query  88   LVTLALILTFFIMEP--VATKSYNEGIK----PYLAEKIGYEEAFIKGAKPFKDFMLKNT  141
            L  +AL+L++FIM P  +A K   + ++    P+ +     +    K+  P+++F+ KN+
Sbjct  55   LYGFALVLSLFIMGPTLLAVKERWHPVQVAGAPFWTS--EWDS---KALAPYRQFLQKNS  109

Query  142  REKDLALFYRI---RNLPNP--KTIDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVID  196
             EK+ A ++R    R  P+   + I   +L +L+PAF +S+L  AF IG+LIYLPFL ID
Sbjct  110  EEKE-ANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAID  168

Query  197  mvvssvlmamgmmmlpptmISLPFKLLIFVLVDGWNLLVQRLVESF  242
            +++S++L+AMGMMM++P  ISLPFKLLIF+L +GW+L + +LV+SF
Sbjct  169  LLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

329) fliP in NC_003912


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  118 bits (429),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 98/226 (44%), Positives = 156/226 (70%), Gaps = 23/226 (10%)

Query  28   LSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTI  87
            +S P++P QL+    I+++L+IL+L   I+ + TSFL+L VVFS+LR+A+G Q +PPN  
Sbjct  1    MSLPDSPLQLI---GILFLLSILPL---IIVMGTSFLKLAVVFSILRNALGIQQVPPNIA  54

Query  88   LVTLALILTFFIMEP--VATKSYNEGIK----PYLAEKIGYEEAFIKGAKPFKDFMLKNT  141
            L  +AL+L++FIM P  +A K   + ++    P+ +     +    K+  P+++F+ KN+
Sbjct  55   LYGFALVLSLFIMGPTLLAVKERWHPVQVAGAPFWTS--EWDS---KALAPYRQFLQKNS  109

Query  142  REKDLALFYRI---RNLPNP--KTIDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVID  196
             EK+ A ++R    R  P+   + I   +L +L+PAF +S+L  AF IG+LIYLPFL ID
Sbjct  110  EEKE-ANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAID  168

Query  197  mvvssvlmamgmmmlpptmISLPFKLLIFVLVDGWNLLVQRLVESF  242
            +++S++L+AMGMMM++P  ISLPFKLLIF+L +GW+L + +LV+SF
Sbjct  169  LLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

330) fliP in NC_017281


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  118 bits (429),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 98/226 (44%), Positives = 156/226 (70%), Gaps = 23/226 (10%)

Query  28   LSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTI  87
            +S P++P QL+    I+++L+IL+L   I+ + TSFL+L VVFS+LR+A+G Q +PPN  
Sbjct  1    MSLPDSPLQLI---GILFLLSILPL---IIVMGTSFLKLAVVFSILRNALGIQQVPPNIA  54

Query  88   LVTLALILTFFIMEP--VATKSYNEGIK----PYLAEKIGYEEAFIKGAKPFKDFMLKNT  141
            L  +AL+L++FIM P  +A K   + ++    P+ +     +    K+  P+++F+ KN+
Sbjct  55   LYGFALVLSLFIMGPTLLAVKERWHPVQVAGAPFWTS--EWDS---KALAPYRQFLQKNS  109

Query  142  REKDLALFYRI---RNLPNP--KTIDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVID  196
             EK+ A ++R    R  P+   + I   +L +L+PAF +S+L  AF IG+LIYLPFL ID
Sbjct  110  EEKE-ANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAID  168

Query  197  mvvssvlmamgmmmlpptmISLPFKLLIFVLVDGWNLLVQRLVESF  242
            +++S++L+AMGMMM++P  ISLPFKLLIF+L +GW+L + +LV+SF
Sbjct  169  LLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

331) Sulba_1139 in NC_018002


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  118 bits (429),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 95/227 (42%), Positives = 155/227 (69%), Gaps = 23/227 (10%)

Query  32   LSAPDTPQQLVTSMNLVLVLTILTLAPSLIFMMTSFLRLLIVFSFLRQAMGTQQMPPSQV  91
            +S PD+P QL+    ++++L+IL L   +I M TSFL+L +VFS+LR+A+G QQ+PP+  
Sbjct  1    MSLPDSPLQLI---GILFLLSILPL---IIVMGTSFLKLAVVFSILRNALGIQQVPPNIA  54

Query  92   MVSLAMILTFFIMEPVM---KESY---DVAVKPYLAEKMSYQEAFEKGSAPFKAFMIRNT  145
            + ++A++L++FIM P +   KE     +VA  P+ +          K+ AP++ F+ +N+
Sbjct  55   LYGFALVLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWD-----SKALAPYRQFLQKNS  109

Query  146  REKDLALFFR-----IRNLENPKNIEDVPLTVAMPAFMISELKTAFEIGFLLYLPFLVID  200
             EK+ A +FR      +  +  ++I   +L + +PAF +S+L  AF IG+L+YLPFL ID
Sbjct  110  EEKE-ANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAID  168

Query  201  mvvssvlmamgmmmlppamISLPFKLLIFVLVDGWNLLVQRLVESFH  247
            +++S++L+AMGMMM++P  ISLPFKLLIF+L +GW+L + +LV+SF 
Sbjct  169  LLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

332) fliP in NC_015976


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  118 bits (430),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 77/191 (41%), Positives = 125/191 (66%), Gaps = 11/191 (5%)

Query  87   TSFTRIIIVLSLLRQALGLAQTPPNQVLVGLALFLSMFVMRPAIDQISATAY-TPYGEGQ  145
            TSF ++ +V+S+LR+ALG+ Q PPN  L G+AL LS+F+M P++  +         + + 
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  146  ITVEEAISRSARVLHGFMTKQTRQSDLALFQNLANAPAFRSPDDI-------PFSILLPA  198
            +   E  S++    + F+ K++ + +   F+NL +      P+DI       ++ IL+PA
Sbjct  88   FWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRT---WPEDIKRKIKPDSLLILIPA  144

Query  199  FVTSELKTAFQIGFMIFLPFLIIDLVVSSTLMALGMMMLSPTIISMPFKLLLFVLVDGWA  258
            F  S+L  AF+IG++I+LPFL IDL++S+ L+A+GMMM+SP  IS+PFKLL+F+L +GW 
Sbjct  145  FTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWD  204

Query  259  LTMGSLAASFA  269
            LT++ L  SF+
Sbjct  205  LTLAQLVQSFS  215

333) Sdel_1122 in NC_013512


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  117 bits (426),  Expect = 7e-28, Method: Compositional matrix adjust.
 Identities = 97/226 (43%), Positives = 155/226 (69%), Gaps = 23/226 (10%)

Query  23   LSAPDSPQQLVTSMNLVLVLTILVLAPSLIFMMTSFLRLLIVFSFLRQALGTQQMPPSQV  82
            +S PDSP QL+    ++++L+IL L   +I M TSFL+L +VFS+LR+ALG QQ+PP+  
Sbjct  1    MSLPDSPLQLI---GILFLLSILPL---IIVMGTSFLKLAVVFSILRNALGIQQVPPNIA  54

Query  83   MVSLAMILTFFIMEPVM---KESY---DVAIKPYLAEKMSYQEAFEKGSAPFKAFMIRNT  136
            + ++A++L++FIM P +   KE     +VA  P+ +          K+ AP++ F+ +N+
Sbjct  55   LYGFALVLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWD-----SKALAPYRQFLQKNS  109

Query  137  REKDLALFFR-----IRNLENPKNIEDVPLTVAMPAFMISELKTAFEIGFLLYLPFLVID  191
             EK+ A +FR      +  +  ++I   +L + +PAF +S+L  AF IG+L+YLPFL ID
Sbjct  110  EEKE-ANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAID  168

Query  192  mvvssvlmamgmmmlppamISLPFKLLIFVLVDGWNLLVQRLVESF  237
            +++S++L+AMGMMM++P  ISLPFKLLIF+L +GW+L + +LV+SF
Sbjct  169  LLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

334) fliP in NC_016745


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  115 bits (419),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 76/188 (41%), Positives = 129/188 (69%), Gaps = 7/188 (3%)

Query  62   SFTRIIVVLAVLRQALGLQQSPPNRVLIGIALSLTLLIMRPVLQDIYHHAFVPYDNGTIG  121
            SF ++ VV+++LR+ALG+QQ PPN  L G+AL L+L+IM P L  +  +   P + +   
Sbjct  29   SFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-KERWHPVQVAGAP  87

Query  122  FEQALMTAKA--PLQTFMLAQTRETDLEQILNIAQE--PTDLSPEEVP--FEVLIPAFVL  175
            F  +   +KA  P + F+  ++ E + + + N+ +   P D+     P  + +LIPAF +
Sbjct  88   FWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTV  147

Query  176  SELKTAFQIGFMLFIPFLVIDLVVASVLMAMGMMMLSPLVISLPFKLMLFVLVDGWSMTV  235
            S+L  AF+IG+++++PFL IDL+++++L+AMGMMM+SP+ ISLPFKL++F+L +GW +T+
Sbjct  148  SQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTL  207

Query  236  GTLARSFG  243
            + L +SF+
Sbjct  208  AQLVQSFS  215

335) Psest_1732 in NC_019936


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  115 bits (420),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 85/210 (41%), Positives = 148/210 (71%), Gaps = 7/210 (3%)

Query  53   SLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQiligltlfltlfi  112
            +LQ++ I+  LS++P ++++ TSF ++ +VFSILR+ALG+QQ P+N  L G++L L+LFI
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  113  MAPVFDRINQDALQPYLSEQIP--AQEAISRAEVPLKNFMLAQTRESDLELFVRLSRRT-  169
            M+P +  ++ +  +P      P  + E  S+A  P ++F+  ++ E + + F  L +RT 
Sbjct  67   MGPTLLAVK-ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW  125

Query  170  --DIASP-EAAPMTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSP  226
              DI     + ++ IL+PAF  S+L  AF+IG++I++PFL ID++++++L+AMGMMM+SP
Sbjct  126  PEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSP  185

Query  227  LIISLPFKIMLFVLVDGWGLIIGTLAGSFG  256
            + ISLPFK+++F+L +GW+L ++ L  SF+
Sbjct  186  MTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

336) fliP in NC_015662


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 82/204 (41%), Positives = 132/204 (65%), Gaps = 15/204 (7%)

Query  51   LLSFISAGLLMMTSFTRIIIVFSLLRNALGTPYSPPNQVLVGLSLFLTFFIMSPVL---D  107
            LLS+++  ++M TSF ++ +VFS+LRNALG    PPN  L G++L L++FIM+P L    
Sbjct  16   LLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVK  75

Query  108  KIYHTAYI---PFQKENISLEIALKRSIIPIHNFMKRQTKSSDLLLFFDLAKIPYVK--K  162
               H   +   PF   +        +++ P ++F+++++   +   F +L K       K
Sbjct  76   ERWHPVQVAGAPFWTSEWD-----SKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIK  130

Query  163  KSLIPMR--ILLPAYMISELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVSPSTISL  220
            + + P    IL+PA+ +S+L  AF+IG+ I++PFL IDL+++++L+A+GMMMVSP TISL
Sbjct  131  RKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISL  190

Query  221  PFKLILFVLADGWRLLIMSLSQSF  244
            PFKL++F+LA+GW L +  L QSF
Sbjct  191  PFKLLIFLLAGGWDLTLAQLVQSF  214

337) spaP in NC_007712


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  115 bits (418),  Expect = 3e-27, Method: Compositional matrix adjust.
 Identities = 79/196 (41%), Positives = 141/196 (72%), Gaps = 2/196 (1%)

Query  24   PFIIASGTCYIKFSIVFVMVRNALGLQQVPSNLTLNGIALMLAMFIMGPIAGDAYNAYQE  83
            P+II  GT ++K+++VF ++RNALG+QQVP+N++L G+AL+L++FIMGP      +  + 
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP  80

Query  84   QPVALGSAASVLEFLENSMESYRHYLQKYADPRLTEFFDRahggggaahdapasghapsM  143
              VA G++    E   +++ +YR++LQK ++ + +++F R       ++D      + S+
Sbjct  81   VQVA-GAPFWTSEWDSKALAPYRQFLQKNSEEKEANYF-RNLIKRTWPEDIKRKIKPDSL  138

Query  144  LALLPAYALSEIKDSFRIGFYLYLPFvvvdllissvllalGMMMMSPITLSVPIKLVLFV  203
            L L+PA+++S++ ++FRIG+ +YLPF+ +DLLIS++LLA+GMMM+SP+T+S+P+KL++F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  204  MLDGWTLLSQGLVLQY  219
            + +GW L    LV  +
Sbjct  199  LAGGWDLTLAQLVQSF  214

338) fliP in NC_012796


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  114 bits (417),  Expect = 4e-27, Method: Compositional matrix adjust.
 Identities = 94/216 (44%), Positives = 147/216 (69%), Gaps = 10/216 (4%)

Query  42   PERVSTLLEILFALTVLSLAPSFVLTVTSFTRIIVVFSFLRQAMGVQQVPPTQILASLAI  101
            P+    L+ ILF L++L+L    ++  TSF ++ VVFS+LR+A+G+QQVPP   L ++A+
Sbjct  4    PDSPLQLIGILFLLSILPLI---IVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL  60

Query  102  FLTAVIMYPTGKAINDNALQPYMNEEIGF--TEALKKAEAPLREFLFKHTREKDLSVFYT  159
             L+  IM PT  A+++   +P       F  +E   KA AP R+FL K++ EK+ + F  
Sbjct  61   VLSLFIMGPTLLAVKER-WHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRN  119

Query  160  ITKMERPKD-KGEVPT---IMLAAGFMISELKTAFTIGFLIYIPFLILDMVISSIllamg  215
            + K  +P D K  +     ++L ++F +S+L  AF IG+LIY+PFL +D++IS+ILLAMG
Sbjct  120  LIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMG  179

Query  216  mmmlppaTIAMPFKLLLFVLVDGWGLIVASLVNSFT  251
            MMM++P TI++PFKLL+F+L +GW+L +A LV+SF+
Sbjct  180  MMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

339) fliP in NC_018028


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  114 bits (417),  Expect = 4e-27, Method: Compositional matrix adjust.
 Identities = 85/210 (41%), Positives = 147/210 (70%), Gaps = 7/210 (3%)

Query  53   SLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQiligltlfltlfi  112
            +LQ++ I+  LS++P ++++ TSF ++ +VFSILR+ALG+QQ P+N  L G++L L+LFI
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  113  MAPVFERINQEALQPYLSEQIP--AQEAIARAEVPLKGFMLAQTRESDLELFVRLSRRT-  169
            M+P +  ++ E  +P      P  + E  ++A  P + F+  ++ E + + F  L +RT 
Sbjct  67   MGPTLLAVK-ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW  125

Query  170  --DIASP-EAAPMTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSP  226
              DI     + ++ IL+PAF  S+L  AF+IG++I++PFL ID++++++L+AMGMMM+SP
Sbjct  126  PEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSP  185

Query  227  LIISLPFKIMLFVLVDGWGLIIGTLAGSFG  256
            + ISLPFK+++F+L +GW+L ++ L  SF+
Sbjct  186  MTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

340) fliP in NC_007925


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  114 bits (415),  Expect = 5e-27, Method: Compositional matrix adjust.
 Identities = 91/216 (43%), Positives = 145/216 (68%), Gaps = 11/216 (5%)

Query  45   VTERAIQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLRTALGTATAPPNSVILALALFL  104
            + + ++QLI++L +LSI P I++M TSF ++ VV+S+LR ALG    PPN  + ++AL L
Sbjct  3    LPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVL  62

Query  105  TAFVMGPVLQKSYDDGIKPL--IANQITVEEALQRAVVPLRGFMQKNVREKDLKLFMDLS  162
            + F+MGP L     +   P+   +  +   E   +A+ P R F+QKN  EK+ + F +L 
Sbjct  63   SLFIMGPTLLAV-KERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLI  121

Query  163  NEPIPA------TPDDLSLRILVPAFMISELKRAFEigfllflpfliidlVVASVLMSMG  216
            +   P        PD  SL IL+PAF +S+L +AF IG+L++LPFL IDL+++++L++MG
Sbjct  122  KRTWPEDIKRKIKPD--SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMG  179

Query  217  MMMLPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSYG  252
            MMM++P+ +SLPFKL++F+L +GW L  + LVQS++
Sbjct  180  MMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

341) fliP in NC_005085


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  114 bits (415),  Expect = 5e-27, Method: Compositional matrix adjust.
 Identities = 89/212 (42%), Positives = 151/212 (72%), Gaps = 11/212 (5%)

Query  43   SLSLQMLLFMTALTFIPAMMLMMTAFTRIVIVLSLLRQALGTTQSPPNQVIVGLALFLTL  102
            +L L  +LF+  L+++P +++M T+F ++ +V+S+LR+ALG  Q PPN  + G+AL L+L
Sbjct  7    PLQLIGILFL--LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSL  64

Query  103  FVMGPTFDQVYAKAWVPFSDDKISFNQALDEGSKPM---KAFMLRQTREKDLAFFIEISQ  159
            F+MGPT+  V  + W P      +F  + + +SK++   + F+ +++ EK+  +F ++ +
Sbjct  65   FIMGPTLLAVKER-WHPVQVAGAPFWTS-EWDSKALAPYRQFLQKNSEEKEANYFRNLIK  122

Query  160  SPKPQS-KEEV---SMKTLIPAFAVSELKTAfqigfmifipfmiiDLVVASILMAMGMMM  215
               P+  K  +   S+  LIPAF+VS+L  AF+IG++I++PF+ IDL++++IL+AMGMMM
Sbjct  123  RTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMM  182

Query  216  VSPVTISLPFKMMLFVLVDGWTLLMGSLVQSF  247
            VSP+TISLPFK+++F+L +GW L ++ LVQSF
Sbjct  183  VSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

342) fliP in NC_020555


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  114 bits (414),  Expect = 8e-27, Method: Compositional matrix adjust.
 Identities = 85/201 (43%), Positives = 139/201 (70%), Gaps = 18/201 (8%)

Query  86   SLVLVM-TSFTRIVIVFAFLRTALGTQQSPPTQVLVSLALVLTFFIMEP----VATKSY-  139
            +L++VM TSF ++ +VF++LR ALG QQ PP   L ++ALVL++FIM P    V  +   
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP  80

Query  140  -EVGIKPYTEKQISYDEAFERAIVPFKDFMIKNTREKDLALFFR-----IRNLENPQTVD  193
             +V+  P+   +        +A+ P+++F+ KN+ EK+ A +FR      +  +  + + 
Sbjct  81   VQVAGAPFWTSEWD-----SKALAPYRQFLQKNSEEKE-ANYFRNLIKRTWPEDIKRKIK  134

Query  194  DVPLTVLIPAFMISELKTAFWIGFLLYLPFLVIDMVISSvlmamgmmmlppvmISLPFKI  253
              +L +LIPAF +S+L  AF+IG+L+YLPFL ID++IS++L+AMGMMM++P+ ISLPFK+
Sbjct  135  PDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKL  194

Query  254  LVFVLVDGWNLLIGNLVQGFK  274
            L+F+L +GW+L +++LVQ+F 
Sbjct  195  LIFLLAGGWDLTLAQLVQSFS  215

343) fliP in NC_004917


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  113 bits (410),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 83/199 (42%), Positives = 138/199 (70%), Gaps = 14/199 (7%)

Query  77   SLVLVM-TSFTRIVIVFAFLRTALGTQQSPPTQVLVSLALILTFFIMEP----VATKSYE  131
            +L++VM TSF ++ +VF++LR ALG QQ PP   L ++AL+L++FIM P    V  +   
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP  80

Query  132  VGIKPYAEKKISYDEAFERAIVPFKDFMIKNTREKDLALFFR-----IRQLENPQSVNDV  186
            V +   +      D    +A+ P+++F+ KN+ EK+ A +FR      +  +  + ++  
Sbjct  81   VQVAGAPFWTSEWDS---KALAPYRQFLQKNSEEKE-ANYFRNLIKRTWPEDIKRKIKPD  136

Query  187  PLTVLLPAFMISELKTAFWIGFLLYLPFLVIDMVISSvlmamgmmmlppvmISLPFKILV  246
            +L +L+PAF +S+L  AF+IG+L+YLPFL ID++IS++L+AMGMMM++P+ ISLPFK+L+
Sbjct  137  SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLI  196

Query  247  FILVDGWNLLIGNLVQGFK  265
            F+L +GW+L +++LVQ+F 
Sbjct  197  FLLAGGWDLTLAQLVQSFS  215

344) fliP in NC_017082


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  113 bits (413),  Expect = 7e-27, Method: Compositional matrix adjust.
 Identities = 90/216 (42%), Positives = 145/216 (68%), Gaps = 11/216 (5%)

Query  43   VTERAIQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLRTAMGTATAPPNSVIIALAMFL  102
            + + ++QLI++L +LSI P I++M TSF ++ VV+S+LR A+G    PPN  + ++A+ L
Sbjct  3    LPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVL  62

Query  103  TFFVMGPVLQKSYDEGIRPL--VANQISVEDALQRASVPLRGFMQKNVREKDLKLFLDLS  160
            ++F+MGP L     E  +P+   +  +   +   +A  P R F+QKN  EK+ + F +L 
Sbjct  63   SLFIMGPTLLAV-KERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLI  121

Query  161  REPPPA------TPDDLALRILVPAFMISELKRAFEigfllflpfliidlVVASVLMSMG  214
            +   P        PD L   IL+PAF +S+L +AF IG+L++LPFL IDL+++++L++MG
Sbjct  122  KRTWPEDIKRKIKPDSLL--ILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMG  179

Query  215  MMMLPPATISLPFKLIFFVLVDGWSLVAGSLVQSYG  250
            MMM++P TISLPFKL++F+L +GW L  + LVQS++
Sbjct  180  MMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

345) fliP in NC_009434


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  113 bits (412),  Expect = 8e-27, Method: Compositional matrix adjust.
 Identities = 81/200 (41%), Positives = 141/200 (71%), Gaps = 7/200 (3%)

Query  4    LSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQiligltlfltlfiMAPVFDRINQ  63
            LS++P ++++ TSF ++ +VFSILR+ALG+QQ P+N  L G++L L+LFIM+P +  ++ 
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVK-  75

Query  64   DALQPYLSEQIP--AQEAIARAEVPLKNFMLAQTRESDLELFVRLSQRT---DIASP-EA  117
            +  +P      P  + E  ++A  P ++F+  ++ E + + F  L +RT   DI     +
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKP  135

Query  118  APMTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIM  177
             ++ IL+PAF  S+L  AF+IG++I++PFL ID++++++L+AMGMMM+SP+ ISLPFK++
Sbjct  136  DSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLL  195

Query  178  LFVLVDGWGLIIGTLAGSFG  197
            +F+L +GW+L ++ L  SF+
Sbjct  196  IFLLAGGWDLTLAQLVQSFS  215

346) Cabther_B0538 in NC_016025


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  113 bits (412),  Expect = 9e-27, Method: Compositional matrix adjust.
 Identities = 90/204 (45%), Positives = 134/204 (66%), Gaps = 10/204 (4%)

Query  52   PFALIMMTSFVKISVVLSILRNALGTQQVPPNQVITGISLILTIFIMAPVAEKMLEE-AG  110
            P+ ++M TSF+K++VV+SILRNALG QQVPPN  + G++L+L++FIM+P    + E    
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP  80

Query  111  LSDATAPVFTEMRADTLFKALDKGKEPLRAFLERNAHEADRRLFLGLAQRLAQKNGKDPN  170
            +  A AP  T  +         K+  P R FL++N++E +   F  L +R    + K   
Sbjct  81   VQVAGAPFWTSEWDS-------KALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIK--R  131

Query  171  AITVRDFRVVVPAFVTSQLTEAFQIGFLLFIPFLVIDMLVSNILQAMGMFMLSPTMISLP  230
             I    + +++PAF  SQLT+AF+IG+L+++PFL ID+L+SNIL AMGM M+SP  ISLP
Sbjct  132  KIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLP  191

Query  231  fklllfvlvkGWVTLIQNLVLSYA  254
            FKLL+F+L  GW   + +LV S++
Sbjct  192  FKLLIFLLAGGWDLTLAQLVQSFS  215

347) fliP in NC_017761


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  113 bits (413),  Expect = 9e-27, Method: Compositional matrix adjust.
 Identities = 85/201 (43%), Positives = 139/201 (70%), Gaps = 18/201 (8%)

Query  86   SLVLVM-TSFTRIVIVFAFLRTALGTQQSPPTQVLVSLALVLTFFIMEP----VATKSY-  139
            +L++VM TSF ++ +VF++LR ALG QQ PP   L ++ALVL++FIM P    V  +   
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP  80

Query  140  -EVGIKPYTEKQISYDEAFERAIVPFKDFMIKNTREKDLALFFR-----IRNLENPQTVD  193
             +V+  P+   +        +A+ P+++F+ KN+ EK+ A +FR      +  +  + + 
Sbjct  81   VQVAGAPFWTSEWD-----SKALAPYRQFLQKNSEEKE-ANYFRNLIKRTWPEDIKRKIK  134

Query  194  DVPLTVLIPAFMISELKTAFWIGFLLYLPFLVIDMVISSvlmamgmmmlppvmISLPFKI  253
              +L +LIPAF +S+L  AF+IG+L+YLPFL ID++IS++L+AMGMMM++P+ ISLPFK+
Sbjct  135  PDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKL  194

Query  254  LVFVLVDGWNLLIGNLVQGFK  274
            L+F+L +GW+L +++LVQ+F 
Sbjct  195  LIFLLAGGWDLTLAQLVQSFS  215

348) fliP in NC_010530


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  113 bits (413),  Expect = 9e-27, Method: Compositional matrix adjust.
 Identities = 85/209 (41%), Positives = 139/209 (67%), Gaps = 7/209 (3%)

Query  70   PVQTLVLLTSLSFLPAAMLMMTGFTRVIIVLGLLRNALGTATSPPNQVLVGLSLFLTFFV  129
            P+Q + +L  LS+LP  ++M T+F ++ +V+++LRNALG    PPN  L G++L L++F+
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  130  MAPVFDRVYNDAYKPLSenkls--leaaaakaaeplkaFMLRQTREKDLAMFAQMAKA--  185
            M+P +  V ++   P+     +       +KA  P + F+ +++ EK+   F ++ K   
Sbjct  67   MGPTLLAV-KERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW  125

Query  186  PE--MQGPEEVPLSILVPAFVTSELKTAFQIGFTIFIPFLIIDLVVASVLMAMGMMMVPP  243
            PE   +     +L IL+PAF  S+L  AF+IG+ I++PFL IDL+++++L+AMGMMMV+P
Sbjct  126  PEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSP  185

Query  244  ATISLPFKLMLFVLVDGWQLLLGSLAQSF  272
             TISLPFKL++F+L +GW+L L+ L QSF
Sbjct  186  MTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

349) fliP in NC_018691


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  112 bits (409),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 80/190 (43%), Positives = 124/190 (66%), Gaps = 13/190 (6%)

Query  70   CFTRIIIVFSLLRTAMGTQSAPPNQVllgltlfltffIMSPVLNRVYQEAWVPLSNDEMG  129
             F ++ +VFS+LR A+G Q  PPN  L G++L L++FIM+P L  V +E W P+      
Sbjct  29   SFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-KERWHPVQVAGAP  87

Query  130  F--EQALSVGSEPFREFMMAQTREPDLALFARLAKTENLNGPEDV-------PLRVLLPA  180
            F   +  S +  P+R+F+  ++ E +   F  L K      PED+       +L +L+PA
Sbjct  88   FWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW---PEDIKRKIKPDSLLILIPA  144

Query  181  FVTSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQ  240
            F  S+L  AF+IG+ I++PFL IDL+++++L+A+GMMMV+P TISLPFKL++F+L +GW+
Sbjct  145  FTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWD  204

Query  241  LLIGSLAQSF  250
            L ++ L QSF
Sbjct  205  LTLAQLVQSF  214

350) fliP in NC_007778


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  112 bits (407),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 91/217 (42%), Positives = 146/217 (68%), Gaps = 11/217 (5%)

Query  43   GVTERAIQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLRTALGTATAPPNMVIIALALF  102
            ++ + ++QLI++L +LSI P I++M TSF ++ VV+S+LR ALG    PPN+ + ++AL 
Sbjct  2    SLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALV  61

Query  103  LTAFVMGPTLQKSYDDGIKPL--IANEMSVEDALVRASGPLRIFMQKNVREKDLKLFLDL  160
            L+ F+MGPTL     +   P+   +      +   +A +P R F+QKN  EK+ + F +L
Sbjct  62   LSLFIMGPTLLAV-KERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  161  SGEPPPA------TPEDLSLRILMPAFMISELKRAFEigfllflpfliidlVVASVLMSM  214
                 P        P+  SL IL+PAF +S+L +AF IG+L++LPFL IDL+++++L++M
Sbjct  121  IKRTWPEDIKRKIKPD--SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAM  178

Query  215  GMMMLPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSYS  251
            GMMM++P+ +SLPFKL++F+L +GW L  + LVQS+S
Sbjct  179  GMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

351) fliP in NC_005296


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  111 bits (405),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 93/217 (43%), Positives = 146/217 (68%), Gaps = 11/217 (5%)

Query  43   GVTERAIQLIALLTVLSIAPSILVMMTSFTRIVVVLSLLRTALGTATAPPNAVIIALALF  102
            ++ + ++QLI++L +LSI P I+VM TSF ++ VV+S+LR ALG    PPN  + ++AL 
Sbjct  2    SLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALV  61

Query  103  LTAFVMGPTLQKSYDEGIKPL--IANEIGVDDAMVRASGPLRIFMQKNVREKDLKLFLDL  160
            L+ F+MGPTL     E   P+   +  +   +   +A +P R F+QKN  EK+ + F +L
Sbjct  62   LSLFIMGPTLLAV-KERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  161  SGEPPPA------TPEDLSLRILMPAFLISELKRAFEigfllflpfliidlVVASILMSM  214
                 P        P+  SL IL+PAF +S+L +AF IG+L++LPFL IDL++++IL++M
Sbjct  121  IKRTWPEDIKRKIKPD--SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAM  178

Query  215  GMMMLPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSYT  251
            GMMM++P+ +SLPFKL++F+L +GW L  + LVQS++
Sbjct  179  GMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

352) fliP in NC_011004


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  111 bits (405),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 93/217 (43%), Positives = 146/217 (68%), Gaps = 11/217 (5%)

Query  43   GVTERAIQLIALLTVLSIAPSILVMMTSFTRIVVVLSLLRTALGTATAPPNAVIIALALF  102
            ++ + ++QLI++L +LSI P I+VM TSF ++ VV+S+LR ALG    PPN  + ++AL 
Sbjct  2    SLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALV  61

Query  103  LTAFVMGPTLQKSYDEGIKPL--IANEIGVDDAMVRASGPLRIFMQKNVREKDLKLFLDL  160
            L+ F+MGPTL     E   P+   +  +   +   +A +P R F+QKN  EK+ + F +L
Sbjct  62   LSLFIMGPTLLAV-KERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  161  SGEPPPA------TPEDLSLRILMPAFLISELKRAFEigfllflpfliidlVVASILMSM  214
                 P        P+  SL IL+PAF +S+L +AF IG+L++LPFL IDL++++IL++M
Sbjct  121  IKRTWPEDIKRKIKPD--SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAM  178

Query  215  GMMMLPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSYT  251
            GMMM++P+ +SLPFKL++F+L +GW L  + LVQS++
Sbjct  179  GMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

353) Thein_0183 in NC_015681


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  111 bits (405),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 81/195 (42%), Positives = 132/195 (68%), Gaps = 15/195 (7%)

Query  63   MVTSFTRLVIVFSLLRHALGTQQTPPNQVlialalfltffiMKPVF------SQAYNQAI  116
            M TSF +L +VFS+LR+ALG QQ PPN  L ++AL L++FIM P +       ++ + A 
Sbjct  26   MGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAG  85

Query  117  SPYLAGEIGDQEFFRDVVKPFREFMFKNTRKKDLALMIRLSGAPKPEN-KEDVST---LT  172
            +P+ ++E + +      + P+R+F+ KN+  K+      L     PE+ K  +     L 
Sbjct  86   APFWTSEWDSKA-----LAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLI  140

Query  173  LIPAFMISELRTAFEIGFLLYIPFLIIDMVVASVLLSMGMMMLPPVMISLPIKVLLFVLV  232
            LIPAF +S+L  AF IG+L+Y+PFL ID++++++LL+MGMMM++P+ ISLP+K+L+F+L 
Sbjct  141  LIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLA  200

Query  233  DGWHLLVGSLVKSFG  247
            +GW+L ++ LV+SF+
Sbjct  201  GGWDLTLAQLVQSFS  215

354) fliP in NC_009445


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  111 bits (403),  Expect = 4e-26, Method: Compositional matrix adjust.
 Identities = 89/216 (42%), Positives = 144/216 (67%), Gaps = 11/216 (5%)

Query  18   VTERAVQLIALLTVLSIAPSILVMMTSFTRIVVVLSLLRTAMGTATAPPNSVIIALAMFL  77
            + + ++QLI++L +LSI P I+VM TSF ++ VV+S+LR A+G    PPN  + ++A+ L
Sbjct  3    LPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVL  62

Query  78   TAFVMGPVLQKSYDDGVRPL--IENQITVEDALQRASVPLRGFMQKNVREKDLKLFMDLS  135
            + F+MGP L     +  +P+      +   +   +A  P R F+QKN  EK+ + F +L 
Sbjct  63   SLFIMGPTLLAV-KERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLI  121

Query  136  GEAPPA------TPDELSLRILVPAFMISELKRAFEigfllflpfliidlVVASVLMSMG  189
              + P        PD  SL IL+PAF +S+L +AF IG+L++LPFL IDL+++++L++MG
Sbjct  122  KRTWPEDIKRKIKPD--SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMG  179

Query  190  MMMLPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSYG  225
            MMM++P+ +SLPFKL++F+L +GW L  + LVQS++
Sbjct  180  MMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

355) fliP in NC_004459


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  111 bits (405),  Expect = 4e-26, Method: Compositional matrix adjust.
 Identities = 88/216 (41%), Positives = 152/216 (71%), Gaps = 20/216 (9%)

Query  86   TLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFI  145
             LQ+++++ +L++LP ++++ TSF ++ VV SILR+A+G+QQ P+N  + G+AL L++FI
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  146  MSPVINEVNE--QAVQ----PYLNEQLTAREAFDAAQGPMKAFMLKQTRVKDLETFVNMS  199
            M+P +  V+E  ++VQ    P+   +  ++     A +P + F+ K++  K+ + F N+ 
Sbjct  67   MGPTLLAVKERWHPVQVAGAPFWTSEWDSK-----ALAPYRQFLQKNSEEKEANYFRNLI  121

Query  200  GEQATNPEDV-------SMAVLIPAFITSELKTAFQIGFMLFLPFLIIDlvvasvlmamg  252
              + T PED+       S+ +LIPAF  S+L  AF+IG++++LPFL IDL+++++L+AMG
Sbjct  122  --KRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMG  179

Query  253  mmmlspmIVSLPFKLMLFVLVDGWNLILSTLAGSFA  288
            MMM+SPM +SLPFKL++F+L +GW+L L+ L  SF+
Sbjct  180  MMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

356) VVMO6_00828 in NC_014965


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  111 bits (405),  Expect = 4e-26, Method: Compositional matrix adjust.
 Identities = 88/216 (41%), Positives = 152/216 (71%), Gaps = 20/216 (9%)

Query  86   TLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFI  145
             LQ+++++ +L++LP ++++ TSF ++ VV SILR+A+G+QQ P+N  + G+AL L++FI
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  146  MSPVINEVNE--QAVQ----PYLNEQLTAREAFDAAQGPMKAFMLKQTRVKDLETFVNMS  199
            M+P +  V+E  ++VQ    P+   +  ++     A +P + F+ K++  K+ + F N+ 
Sbjct  67   MGPTLLAVKERWHPVQVAGAPFWTSEWDSK-----ALAPYRQFLQKNSEEKEANYFRNLI  121

Query  200  GEQATNPEDV-------SMAVLIPAFITSELKTAFQIGFMLFLPFLIIDlvvasvlmamg  252
              + T PED+       S+ +LIPAF  S+L  AF+IG++++LPFL IDL+++++L+AMG
Sbjct  122  --KRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMG  179

Query  253  mmmlspmIVSLPFKLMLFVLVDGWNLILSTLAGSFA  288
            MMM+SPM +SLPFKL++F+L +GW+L L+ L  SF+
Sbjct  180  MMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

357) fliP in NC_005139


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  111 bits (405),  Expect = 4e-26, Method: Compositional matrix adjust.
 Identities = 88/216 (41%), Positives = 152/216 (71%), Gaps = 20/216 (9%)

Query  86   TLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFI  145
             LQ+++++ +L++LP ++++ TSF ++ VV SILR+A+G+QQ P+N  + G+AL L++FI
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  146  MSPVINEVNE--QAVQ----PYLNEQLTAREAFDAAQGPMKAFMLKQTRVKDLETFVNMS  199
            M+P +  V+E  ++VQ    P+   +  ++     A +P + F+ K++  K+ + F N+ 
Sbjct  67   MGPTLLAVKERWHPVQVAGAPFWTSEWDSK-----ALAPYRQFLQKNSEEKEANYFRNLI  121

Query  200  GEQATNPEDV-------SMAVLIPAFITSELKTAFQIGFMLFLPFLIIDlvvasvlmamg  252
              + T PED+       S+ +LIPAF  S+L  AF+IG++++LPFL IDL+++++L+AMG
Sbjct  122  --KRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMG  179

Query  253  mmmlspmIVSLPFKLMLFVLVDGWNLILSTLAGSFA  288
            MMM+SPM +SLPFKL++F+L +GW+L L+ L  SF+
Sbjct  180  MMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

358) bgla_1g00250 in NC_015381


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  110 bits (399),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 84/201 (42%), Positives = 138/201 (69%), Gaps = 7/201 (3%)

Query  85   MLSFLPAIVLMMTSFTRIIIVLSLLRQALGTTTTPPNQVLVGLALFLTLFVMSPVLDRAY  144
            +LS+LP I++M TSF ++ +V+S+LR+ALG    PPN  L G+AL L+LF+M+P L  A 
Sbjct  16   LLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTL-LAV  74

Query  145  TDGYQPFSAGTLP--MDQAVQRGLAPFKTFMLKQTRESDLALFAR-ISKAPPMQGPEDV-  200
             +  +P   +  P    +   ++LAP++ F+ K++ E +   F   I ++ P +    + 
Sbjct  75   KERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIK  134

Query  201  --PLPLLVPAFLTSELKTGFQIGFTIFIPFLIIDLvvasvlmsmgmmmvsPTTISLPFKL  258
              +L +L+PAF  S+L  +F+IG+ I++PFL IDL+++++L++MGMMMVSP TISLPFKL
Sbjct  135  PDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKL  194

Query  259  MLFVLVDGWQLLIGSLAQSFT  279
            ++F+L +GW+L ++ L QSF+
Sbjct  195  LIFLLAGGWDLTLAQLVQSFS  215

359) fliP in NC_020453


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  110 bits (399),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 88/217 (41%), Positives = 145/217 (67%), Gaps = 11/217 (5%)

Query  41   GVTERAVQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLRTAMGTATAPPNSVIIALAMF  100
            ++ + ++QLI++L +LSI P I++M TSF ++ VV+S+LR A+G    PPN  + ++A+ 
Sbjct  2    SLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALV  61

Query  101  LTAFVMGPVLQKSYDDGVRPL--IENQIGVEDALQRASVPLRGFMQKNVREKDLKLFMDL  158
            L+ F+MGP L     +  +P+      +   +   +A  P R F+QKN  EK+ + F +L
Sbjct  62   LSLFIMGPTLLAV-KERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  159  SGEAPPA------TPDELSLRILVPAFMISELKRAFEigfllflpfliidlVVASVLMSM  212
               + P        PD  SL IL+PAF +S+L +AF IG+L++LPFL IDL+++++L++M
Sbjct  121  IKRTWPEDIKRKIKPD--SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAM  178

Query  213  GMMMLPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSYG  249
            GMMM++P+ +SLPFKL++F+L +GW L  + LVQS++
Sbjct  179  GMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

360) fliP in NC_012039


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  110 bits (402),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 95/225 (43%), Positives = 156/225 (70%), Gaps = 21/225 (9%)

Query  28   LSAPNSPQQLVTTLNIVIVLTILALAPTIVFVMTSFLRLVVVFSFLRTALGTQTMPPNTI  87
            +S P+SP QL+    I+++L+IL+L   I+ + TSFL+L VVFS+LR ALG Q +PPN  
Sbjct  1    MSLPDSPLQLI---GILFLLSILPL---IIVMGTSFLKLAVVFSILRNALGIQQVPPNIA  54

Query  88   LVTLALILTFFIMEP--VATKSYNEGIK----PYIAEQIGYEEAFAKGVKPFKDFMLKNT  141
            L  +AL+L++FIM P  +A K   + ++    P+ + + +     +K++ P+++F+ KN+
Sbjct  55   LYGFALVLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWD-----SKALAPYRQFLQKNS  109

Query  142  REKDLALFY----RIRNLENPKTIDDVPLTVLVPAFMISELKTAFEIGFLLFLPFLVIDm  197
             EK+   F     R +  +  + I   +L +L+PAF +S+L  AF IG+L++LPFL ID+
Sbjct  110  EEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDL  169

Query  198  vvssvlmamgmmmlppvmismpFKLLIFVLVDGWNLLIQNLVKSF  242
            ++S++L+AMGMMM++P+ IS+PFKLLIF+L +GW+L + +LV+SF
Sbjct  170  LISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

361) fliP in NC_014810


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  110 bits (402),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 83/195 (43%), Positives = 134/195 (69%), Gaps = 19/195 (9%)

Query  67   TSFIRLIVVFSFLRTALGTQQTPPTQILVSLALILTFFIMEPT---AKKSY---KIAIKP  120
            TSF++L VVFS+LR ALG QQ PP   L ++AL+L++FIM PT    K      ++A  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  121  YLAEKISYTQAFE-RGVVPFKEFMLKNTREKDLALFFR-----IRNLENPKDVNSVPLSV  174
            +       T   + +++ P+++F+ KN+ EK+ A +FR      +  +  + +++ +L +
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKE-ANYFRNLIKRTWPEDIKRKIKPDSLLI  140

Query  175  LVPAFMISELKTAFQIGFLLYLPFLVIDMVvssilmamgmmmlppvmiSLPFKILVFILV  234
            L+PAF +S+L  AF+IG+L+YLPFL ID+++S+IL+AMGMMM++P+ ISLPFK+L+F+L 
Sbjct  141  LIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLA  200

Query  235  DGFNLLIENLVASFK  249
            +G +L + +LV SF 
Sbjct  201  GGWDLTLAQLVQSFS  215

362) fliP in NC_009485


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  110 bits (402),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 88/217 (41%), Positives = 145/217 (67%), Gaps = 11/217 (5%)

Query  25   GVTERAVQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLRTAMGTATAPPNAVIIALAMF  84
            ++ + ++QLI++L +LSI P I++M TSF ++ VV+S+LR A+G    PPN  + ++A+ 
Sbjct  2    SLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALV  61

Query  85   LTAFVMGPVLQKSYDDGVRPL--IENQIGVEDALQRASVPLRGFMQKNVREKDLKLFMDL  142
            L+ F+MGP L     +  +P+      +   +   +A  P R F+QKN  EK+ + F +L
Sbjct  62   LSLFIMGPTLLAV-KERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  143  SGEAPPA------TPDELSLRILVPAFMISELKRAFEigfllflpfliidlVVASVLMSM  196
               + P        PD  SL IL+PAF +S+L +AF IG+L++LPFL IDL+++++L++M
Sbjct  121  IKRTWPEDIKRKIKPD--SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAM  178

Query  197  GMMMLPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSYG  233
            GMMM++P+ +SLPFKL++F+L +GW L  + LVQS++
Sbjct  179  GMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

363) fliP in NC_004463


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  110 bits (402),  Expect = 6e-26, Method: Compositional matrix adjust.
 Identities = 91/217 (42%), Positives = 145/217 (67%), Gaps = 11/217 (5%)

Query  41   GVTERAIQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLRTAMGTATAPPNSVIIALAMF  100
            ++ + ++QLI++L +LSI P I++M TSF ++ VV+S+LR A+G    PPN  + ++A+ 
Sbjct  2    SLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALV  61

Query  101  LTFFVMGPVLQKSYDEGIRPL--VANQIGVEDALQRASVPLRGFMQKNVREKDLKLFLDL  158
            L++F+MGP L     E  +P+   +  +   +   +A  P R F+QKN  EK+ + F +L
Sbjct  62   LSLFIMGPTLLAV-KERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  159  SGEPPPA------TPDELALRILIPAFMISELKRAFEigfllflpfliidlVVASVLMSM  212
                 P        PD L   ILIPAF +S+L +AF IG+L++LPFL IDL+++++L++M
Sbjct  121  IKRTWPEDIKRKIKPDSLL--ILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAM  178

Query  213  GMMMLPPATISLPFKLIFFVLVDGWSLVAGSLVQSYG  249
            GMMM++P TISLPFKL++F+L +GW L  + LVQS++
Sbjct  179  GMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

364) S70_18345 in NC_017731


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  110 bits (401),  Expect = 6e-26, Method: Compositional matrix adjust.
 Identities = 73/180 (41%), Positives = 121/180 (68%), Gaps = 9/180 (5%)

Query  62   MMTSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFVMSPVADQAYREAYQPFSED  121
            M TSF ++ +V+++LRNALG    PPN  L G+AL L++F+M+P    A +E  +P    
Sbjct  26   MGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTL-LAVKERWHPVQVA  84

Query  122  KISLETALERGT---APFRTFMLGQTRESDLALFARIAK---VGEI-QEAKDVPMRILVP  174
              ++ T+ E+++   AP+R F+  ++ E +   F  + K     +I +  K  ++ IL+P
Sbjct  85   GAPFWTS-EWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIP  143

Query  175  AFITSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGW  234
            AF  S+L  AF+IG+ I++PFL IDL+++++L+A+GMMMV+P T+SLPFKL++F+L +GW
Sbjct  144  AFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGW  203

365) fliP in NC_007406


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  110 bits (400),  Expect = 7e-26, Method: Compositional matrix adjust.
 Identities = 89/216 (42%), Positives = 145/216 (68%), Gaps = 9/216 (4%)

Query  42   GVTERAIQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLRTALGTATAPPNSVIIALAMF  101
            ++ + ++QLI++L +LSI P I++M TSF ++ VV+S+LR ALG    PPN  + ++A+ 
Sbjct  2    SLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALV  61

Query  102  LTAFVMGPTLQKSYDEGIKPLVANETT--VEEALQRASVPLRGFMQKNVREQDLKLFMDL  159
            L+ F+MGPTL     E   P+    +     E   +A  P R F+QKN  E++ + F +L
Sbjct  62   LSLFIMGPTLLAV-KERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  160  -----SGEPPPATPADLSLRILMPAFMISELKRAFEigfllflpfliidlVVASVLMSMG  214
                 + +      +D SL IL+PAF +S+L +AF IG+L++LPFL IDL+++++L++MG
Sbjct  121  IKRTWPEDIKRKIKPD-SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMG  179

Query  215  MMMLPPVVVSLPFKLIFFVLVDGWALVAGSLVQSYG  250
            MMM++P+ +SLPFKL++F+L +GW L  + LVQS++
Sbjct  180  MMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

366) fliP in NC_009802


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  110 bits (400),  Expect = 8e-26, Method: Compositional matrix adjust.
 Identities = 88/199 (45%), Positives = 139/199 (70%), Gaps = 21/199 (10%)

Query  57   IFMMTSFLRLVIVFSFLRQAMGTQQVPPSTVLISLAMVLTFFIMEP----VGQRSYDEGI  112
            I M TSFL+L +VFS+LR+A+G QQVPP+  L ++A+VL++FIM P    V +R     +
Sbjct  24   IVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQV  83

Query  113  K--PYIAEQIGYEEMLDKSLKPFKEFMVKNTREKDLALFFRIRNLQNPANIEDI------  164
               P+ + + +      K+L P+++F+ KN+ EK+   F   RNL + +  EDI      
Sbjct  84   AGAPFWTSEWD-----SKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKP  135

Query  165  -PLSIAMSAFMISELKTSFEIAFLLYLPFLVIDmvvssvlmamgmmmlppvmISLPFKLL  223
             +L I ++AF +S+L  +F I++L+YLPFL ID+++S++L+AMGMMM++P+ ISLPFKLL
Sbjct  136  DSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLL  195

Query  224  IFVLVDGWNLLIGNLVKSF  242
            IF+L +GW+L +++LV+SF
Sbjct  196  IFLLAGGWDLTLAQLVQSF  214

367) fliP in NC_017249


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  110 bits (399),  Expect = 9e-26, Method: Compositional matrix adjust.
 Identities = 90/216 (42%), Positives = 144/216 (67%), Gaps = 11/216 (5%)

Query  20   VTERAIQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLRTAMGTATAPPNSVIIALAMFL  79
            + + ++QLI++L +LSI P I++M TSF ++ VV+S+LR A+G    PPN  + ++A+ L
Sbjct  3    LPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVL  62

Query  80   TFFVMGPVLQKSYDEGIRPL--VANQLGVEDALQRASVPLRGFMQKNVREKDLKLFLDLS  137
            ++F+MGP L     E  +P+   +  +   +   +A  P R F+QKN  EK+ + F +L 
Sbjct  63   SLFIMGPTLLAV-KERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLI  121

Query  138  GEPPPA------TPDDLALRILVPAFMISELKRAFEigfllflpfliidlVVASVLMSMG  191
                P        PD L   IL+PAF +S+L +AF IG+L++LPFL IDL+++++L++MG
Sbjct  122  KRTWPEDIKRKIKPDSLL--ILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMG  179

Query  192  MMMLPPATISLPFKLIFFVLVDGWSLVAGSLVQSYG  227
            MMM++P TISLPFKL++F+L +GW L  + LVQS++
Sbjct  180  MMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

368) Rpdx1_1458 in NC_014834


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  109 bits (397),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 92/217 (43%), Positives = 144/217 (67%), Gaps = 11/217 (5%)

Query  44   GVTERAIQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLRTALGTATAPPNAVIIALALF  103
            ++ + ++QLI++L +LSI P I++M TSF ++ VV+S+LR ALG    PPN  + ++AL 
Sbjct  2    SLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALV  61

Query  104  LTAFVMGPTLQKAYDDGIKPLIANEIG--VDDALVRASGPMRVFMQKNVREKDLKLFLDL  161
            L+ F+MGPTL     +   P+          +   +A +P R F+QKN  EK+ + F +L
Sbjct  62   LSLFIMGPTLLAV-KERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  162  SGEPPPA------TPEDLSLRILMPAFLISELKRAFEigfllflpfliidlVVASILMSM  215
                 P        P+  SL IL+PAF +S+L +AF IG+L++LPFL IDL++++IL++M
Sbjct  121  IKRTWPEDIKRKIKPD--SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAM  178

Query  216  GMMMLPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSYS  252
            GMMM++P+ +SLPFKL++F+L +GW L  + LVQS+S
Sbjct  179  GMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

369) fliP in NC_007958


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  109 bits (396),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 92/217 (43%), Positives = 145/217 (67%), Gaps = 11/217 (5%)

Query  44   GVTERAIQLIALLTVLSIAPSILVMMTSFTRIVVVLSLLRTALGTATAPPNSVIIALALF  103
            ++ + ++QLI++L +LSI P I+VM TSF ++ VV+S+LR ALG    PPN  + ++AL 
Sbjct  2    SLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALV  61

Query  104  LTGFVMGPTLQKSYDDGIKPLIANEMA--VEDALVRASGPLRIFMQKNVREKDLKLFLDL  161
            L+ F+MGPTL     +   P+     +    +   +A +P R F+QKN  EK+ + F +L
Sbjct  62   LSLFIMGPTLLAV-KERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  162  SGEQPPA------TPEELSLRILMPAFMISELKRAFEigfllflpfliidlVVASVLMSM  215
                 P        P+  SL IL+PAF +S+L +AF IG+L++LPFL IDL+++++L++M
Sbjct  121  IKRTWPEDIKRKIKPD--SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAM  178

Query  216  GMMMLPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSYS  252
            GMMM++P+ +SLPFKL++F+L +GW L  + LVQS+S
Sbjct  179  GMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

370) bglu_1g00190 in NC_012724


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  109 bits (395),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 84/204 (42%), Positives = 139/204 (69%), Gaps = 13/204 (6%)

Query  72   MLSFLPAIVLMMTSFTRIIIVLSLMRQALGTATTPPNQVLVGLALFLTLFVMSPVIDRAY  131
            +LS+LP I++M TSF ++ +V+S++R+ALG    PPN  L G+AL L+LF+M+P +  A 
Sbjct  16   LLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTL-LAV  74

Query  132  NDGYKPFSAGTLP--MDQAVQRGLAPFKTFMLKQTREGDLALFAKIAKAPAMQGPEDV--  187
            ++   P   +  P    +   ++LAP++ F+ K++ E +   F ++ K      PED+  
Sbjct  75   KERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW---PEDIKR  131

Query  188  -----PLPLLVPAFVTSELKTGFQIGFTIFIPFLIIDLvvasvlmsmgmmmvsPTTISLP  242
                 +L +L+PAF  S+L  +F+IG+ I++PFL IDL+++++L++MGMMMVSP TISLP
Sbjct  132  KIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLP  191

Query  243  FKLMLFVLVDGWQLLIGSLAQSFT  266
            FKL++F+L +GW+L ++ L QSF+
Sbjct  192  FKLLIFLLAGGWDLTLAQLVQSFS  215

371) fliP in NC_006370


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  109 bits (395),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 87/211 (42%), Positives = 145/211 (69%), Gaps = 10/211 (4%)

Query  81   TLQILGLMTALGFLPAIIILMTSFTRIVVVLSILRQAMGLQQTPSNQVIIGIALFLTLFV  140
             LQ++G++  L++LP II++ TSF ++ VV+SILR+A+G+QQ P+N  + G+AL L+LF+
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  141  MSPVIDKVNADAVQPYINEEITAAQAFETAQV-PLRQFMLKQTRVKDLESFVNMSGSTAT  199
            M+P +  V+       +      +   ++  + P RQF+ K++  K+ + F N+     T
Sbjct  67   MGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLI--KRT  124

Query  200  APEDV-------PITVLIPAFITSELKTAFQIGFMLFLPFLIIDlvvasvlmamgmmmls  252
             PED+       ++ +LIPAF  S+L  AF+IG++++LPFL IDL+++++L+AMGMMM+S
Sbjct  125  WPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVS  184

Query  253  pmIVSLPFKLMLFVLVDGWNLILSTLAGSFG  283
            PM +SLPFKL++F+L +GW+L L+ L  SF+
Sbjct  185  PMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

372) fliP in NC_007964


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  109 bits (396),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 88/216 (41%), Positives = 146/216 (68%), Gaps = 9/216 (4%)

Query  42   GVTERAIQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLRTALGTATAPPNSVIIALAMF  101
            ++ + ++QLI++L +LSI P I++M TSF ++ VV+S+LR ALG    PPN  + ++A+ 
Sbjct  2    SLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALV  61

Query  102  LTAFVMGPTLQKSYDDGIKPL--VANQITVEEALQRASVPLRGFMQKNVREQDLKLFIDL  159
            L+ F+MGPTL     +   P+   +  +   E   +A  P R F+QKN  E++ + F +L
Sbjct  62   LSLFIMGPTLLAV-KERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  160  -----SGEPPPATPADLSLRILMPAFMISELKRAFEigfllflpfliidlVVASVLMSMG  214
                 + +      +D SL IL+PAF +S+L +AF IG+L++LPFL IDL+++++L++MG
Sbjct  121  IKRTWPEDIKRKIKPD-SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMG  179

Query  215  MMMLPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSYG  250
            MMM++P+ +SLPFKL++F+L +GW L  + LVQS++
Sbjct  180  MMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

373) fliP in NC_017361


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  108 bits (394),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 88/197 (45%), Positives = 131/197 (67%), Gaps = 23/197 (11%)

Query  64   TSFIRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDTGIKP  117
            TSF++L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + + +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  118  YMDKKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPDDV-------SL  169
            +       T   +  AL P+++F+ KN+ EK+   F   RNL +   P+D+       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  170  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFI  229
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  230  LVDGFNLLTENLVASFK  246
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

374) fliP in NC_008229


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  108 bits (391),  Expect = 4e-25, Method: Compositional matrix adjust.
 Identities = 87/197 (45%), Positives = 131/197 (67%), Gaps = 23/197 (11%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDIGIKP  117
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + +++  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  118  YMDKKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRQLPNPKTPDDV-------SL  169
            +       T   +  AL P+++F+ KN+ EK+   F   R+L +   P+D+       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  170  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFI  229
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  230  LVDGFNLLTENLVASFK  246
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

375) ABED_0941 in NC_017187


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  108 bits (391),  Expect = 4e-25, Method: Compositional matrix adjust.
 Identities = 79/196 (41%), Positives = 138/196 (71%), Gaps = 17/196 (8%)

Query  57   MVTSFTRLIIVFSLLRQAMGlqqtppsqiiislsliltiFIMEPY---AKKAWDDAIV--  111
            M TSF +L +VFS+LR+A+G+QQ PP+  + +++L+L++FIM P     K  W+   V  
Sbjct  26   MGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAG  85

Query  112  -PYMDEKIGYEVAFDKGVAPFKEFMIKNTREADLALFYR--IKK---EPNPKNIEAVPLT  165
             P+     +      K++AP+++F+ KN+ E + A ++R  IK+   E   ++I + +L 
Sbjct  86   APFWTSEWD-----SKALAPYRQFLQKNSEEKE-ANYFRNLIKRTWPEDIKRKIKPDSLL  139

Query  166  LLMPAFIVSELRTAFEIGFLIFLPFLVIDIIVASILMSLGMMMLPPVMISLPIKIIFFIV  225
            +L+PAF VS+L  AF IG+LI+LPFL ID+++++IL+++GMMM++P+ ISLP+K+++F++
Sbjct  140  ILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLL  199

Query  226  VDGWQLIIGNLAQSFK  241
             +GW+L +++L QSF 
Sbjct  200  AGGWDLTLAQLVQSFS  215

376) fliP in NC_009850


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  108 bits (391),  Expect = 4e-25, Method: Compositional matrix adjust.
 Identities = 79/196 (41%), Positives = 138/196 (71%), Gaps = 17/196 (8%)

Query  57   MVTSFTRLIIVFSLLRQAMGlqqtppsqiiislsliltiFIMEPY---AKKAWDDAIV--  111
            M TSF +L +VFS+LR+A+G+QQ PP+  + +++L+L++FIM P     K  W+   V  
Sbjct  26   MGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAG  85

Query  112  -PYMDEKIGYEVAFDKGVAPFKEFMIKNTREADLALFYR--IKK---EPNPKNIEAVPLT  165
             P+     +      K++AP+++F+ KN+ E + A ++R  IK+   E   ++I + +L 
Sbjct  86   APFWTSEWD-----SKALAPYRQFLQKNSEEKE-ANYFRNLIKRTWPEDIKRKIKPDSLL  139

Query  166  LLMPAFIVSELRTAFEIGFLIFLPFLVIDIIVASILMSLGMMMLPPVMISLPIKIIFFIV  225
            +L+PAF VS+L  AF IG+LI+LPFL ID+++++IL+++GMMM++P+ ISLP+K+++F++
Sbjct  140  ILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLL  199

Query  226  VDGWQLIIGNLAQSFK  241
             +GW+L +++L QSF 
Sbjct  200  AGGWDLTLAQLVQSFS  215

377) fliP in NC_020134


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  108 bits (392),  Expect = 4e-25, Method: Compositional matrix adjust.
 Identities = 81/200 (41%), Positives = 141/200 (71%), Gaps = 13/200 (6%)

Query  67   PSIIIMMTSFTRIIVVLSFLRNAMGTQQMPPNQVLIGLALFLTFFIMSPVLSDLNEQALK  126
            P II+M TSF ++ VV+S+LRNA+G QQ+PPN  L G+AL L++FIM+P L  ++E+   
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKER-WH  79

Query  127  PLSENEITLE----EAIDKASYIMKDFMLNKAKVREKDLALFANIARIEEPENLMDL---  179
            P+      +     ++   A+Y  ++F+ +++   EK+   F N+ +   PE++      
Sbjct  80   PVQVAGAPFWTSEWDSKALAPY--RQFLQKNSE--EKEANYFRNLIKRTWPEDIKRKIKP  135

Query  180  -PMKVVIPAFMISELTTAFKMGFMLYIPFLVIDMVVASTlmsmgmmmlppvmISLPFKIL  238
             ++ ++IPAF +S+LT AF++G+++Y+PFL ID+++++ L++MGMMM++P+ ISLPFK+L
Sbjct  136  DSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLL  195

Query  239  LFLLVDGWNLVIGTIVQSFG  258
            +FLL +GW+L ++ +VQSF+
Sbjct  196  IFLLAGGWDLTLAQLVQSFS  215

378) fliP in NC_020887


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  108 bits (392),  Expect = 4e-25, Method: Compositional matrix adjust.
 Identities = 81/200 (41%), Positives = 141/200 (71%), Gaps = 13/200 (6%)

Query  67   PSIIIMMTSFTRIIVVLSFLRNAMGTQQMPPNQVLIGLALFLTFFIMSPVLSDLNEQALK  126
            P II+M TSF ++ VV+S+LRNA+G QQ+PPN  L G+AL L++FIM+P L  ++E+   
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKER-WH  79

Query  127  PLSENEITLE----EAIDKASYIMKDFMLNKAKVREKDLALFANIARIEEPENLMDL---  179
            P+      +     ++   A+Y  ++F+ +++   EK+   F N+ +   PE++      
Sbjct  80   PVQVAGAPFWTSEWDSKALAPY--RQFLQKNSE--EKEANYFRNLIKRTWPEDIKRKIKP  135

Query  180  -PMKVVIPAFMISELTTAFKMGFMLYIPFLVIDMVVASTlmsmgmmmlppvmISLPFKIL  238
             ++ ++IPAF +S+LT AF++G+++Y+PFL ID+++++ L++MGMMM++P+ ISLPFK+L
Sbjct  136  DSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLL  195

Query  239  LFLLVDGWNLVIGTIVQSFG  258
            +FLL +GW+L ++ +VQSF+
Sbjct  196  IFLLAGGWDLTLAQLVQSFS  215

379) BC1001_3381 in NC_015136


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  108 bits (391),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 82/200 (41%), Positives = 134/200 (67%), Gaps = 7/200 (3%)

Query  83   MLSFLPAMVLMMTSFTRIIIVLSLLRQALGTTTTPPNQVLVGLALFLTLFVMSPVLDKAY  142
            +LS+LP +++M TSF ++ +V+S+LR+ALG    PPN  L G+AL L+LF+M+P L  A 
Sbjct  16   LLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTL-LAV  74

Query  143  TDGYKPFSEGTVPMETAV--SRGLAPFKTFMLRQTRESDLALF----ARISHAAPMQGPE  196
             +   P   +  P  T+   S++LAP++ F+ +++ E +   F     R       +   
Sbjct  75   KERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIK  134

Query  197  DVPLSLLVPSFVTSELKTGFQIGFTIFIPFLIIDmvvasvlmsmgmmmvsPATISLPFKL  256
              +L +L+P+F  S+L  +F+IG+ I++PFL ID++++++L++MGMMMVSP TISLPFKL
Sbjct  135  PDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKL  194

Query  257  MLFVLVDGWQLLLGSLAQSF  276
            ++F+L +GW+L L+ L QSF
Sbjct  195  LIFLLAGGWDLTLAQLVQSF  214

380) BC1003_3339 in NC_014539


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  108 bits (391),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 82/200 (41%), Positives = 134/200 (67%), Gaps = 7/200 (3%)

Query  83   MLSFLPAMVLMMTSFTRIIIVLSLLRQALGTTTTPPNQVLVGLALFLTLFVMSPVLDKAY  142
            +LS+LP +++M TSF ++ +V+S+LR+ALG    PPN  L G+AL L+LF+M+P L  A 
Sbjct  16   LLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTL-LAV  74

Query  143  TDGYKPFSEGTVPMETAV--SRGLAPFKTFMLRQTRESDLALF----ARISHAAPMQGPE  196
             +   P   +  P  T+   S++LAP++ F+ +++ E +   F     R       +   
Sbjct  75   KERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIK  134

Query  197  DVPLSLLVPSFVTSELKTGFQIGFTIFIPFLIIDmvvasvlmsmgmmmvsPATISLPFKL  256
              +L +L+P+F  S+L  +F+IG+ I++PFL ID++++++L++MGMMMVSP TISLPFKL
Sbjct  135  PDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKL  194

Query  257  MLFVLVDGWQLLLGSLAQSF  276
            ++F+L +GW+L L+ L QSF
Sbjct  195  LIFLLAGGWDLTLAQLVQSF  214

381) fliP in NC_021878


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (390),  Expect = 4e-25, Method: Compositional matrix adjust.
 Identities = 79/196 (41%), Positives = 138/196 (71%), Gaps = 17/196 (8%)

Query  57   MVTSFTRLIIVFSLLRQAMGlqqtppsqiiislsliltiFIMEPY---AKKAWDDAIV--  111
            M TSF +L +VFS+LR+A+G+QQ PP+  + +++L+L++FIM P     K  W+   V  
Sbjct  26   MGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAG  85

Query  112  -PYMDEKIGYEVAFDKGVAPFKEFMIKNTREADLALFYR--IKK---EPNPKNIEAVPLT  165
             P+     +      K++AP+++F+ KN+ E + A ++R  IK+   E   ++I + +L 
Sbjct  86   APFWTSEWD-----SKALAPYRQFLQKNSEEKE-ANYFRNLIKRTWPEDIKRKIKPDSLL  139

Query  166  LLMPAFIVSELRTAFEIGFLIFLPFLVIDIIVASILMSLGMMMLPPVMISLPIKIIFFIV  225
            +L+PAF VS+L  AF IG+LI+LPFL ID+++++IL+++GMMM++P+ ISLP+K+++F++
Sbjct  140  ILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLL  199

Query  226  VDGWQLIIGNLAQSFK  241
             +GW+L +++L QSF 
Sbjct  200  AGGWDLTLAQLVQSFS  215

382) fliP in NC_017366


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (390),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 86/191 (46%), Positives = 128/191 (68%), Gaps = 11/191 (5%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKTI  123
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L    +      +  + 
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  124  SYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPDEV-------SLSVLIPA  175
              T   +  AL P+++F+ KN+ EK+   F   RNL +   P+++       SL +LIPA
Sbjct  88   FWTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSLLILIPA  144

Query  176  FMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
            F +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+L +G +
Sbjct  145  FTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWD  204

Query  236  LLTENLVASFK  246
            L   +LV SF 
Sbjct  205  LTLAQLVQSFS  215

383) fliP in NC_017355


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (390),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 87/191 (46%), Positives = 127/191 (67%), Gaps = 11/191 (5%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYVDKKI  123
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L    +      V    
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  124  SYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPDEV-------SLSVLIPA  175
              T   +  AL P+++F+ KN+ EK+   F   RNL +   P+++       SL +LIPA
Sbjct  88   FWTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSLLILIPA  144

Query  176  FMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
            F +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+L +G +
Sbjct  145  FTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWD  204

Query  236  LLTENLVASFK  246
            L   +LV SF 
Sbjct  205  LTLAQLVQSFS  215

384) fliP in NC_019560


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (390),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 87/197 (45%), Positives = 130/197 (66%), Gaps = 23/197 (11%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDTGIKP  117
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + + +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  118  YMDKKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPDEV-------SL  169
            +       T   +  AL P+++F+ KN+ EK+   F   RNL +   P+++       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  170  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFI  229
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  230  LVDGFNLLTENLVASFK  246
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

385) fliP in NC_012973


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (390),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 87/197 (45%), Positives = 130/197 (66%), Gaps = 23/197 (11%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDTGIKP  117
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + + +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  118  YMDKKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPDEV-------SL  169
            +       T   +  AL P+++F+ KN+ EK+   F   RNL +   P+++       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  170  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFI  229
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  230  LVDGFNLLTENLVASFK  246
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

386) fliP in NC_017358


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (390),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 87/197 (45%), Positives = 130/197 (66%), Gaps = 23/197 (11%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDTGIKP  117
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + + +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  118  YMDKKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPDEV-------SL  169
            +       T   +  AL P+++F+ KN+ EK+   F   RNL +   P+++       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  170  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFI  229
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  230  LVDGFNLLTENLVASFK  246
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

387) fliP in NC_017368


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (390),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 87/197 (45%), Positives = 130/197 (66%), Gaps = 23/197 (11%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDTGIKP  117
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + + +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  118  YMDKKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPDEV-------SL  169
            +       T   +  AL P+++F+ KN+ EK+   F   RNL +   P+++       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  170  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFI  229
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  230  LVDGFNLLTENLVASFK  246
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

388) fliP in NC_017365


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (390),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 87/197 (45%), Positives = 130/197 (66%), Gaps = 23/197 (11%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDTGIKP  117
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + + +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  118  YMDKKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPDEV-------SL  169
            +       T   +  AL P+++F+ KN+ EK+   F   RNL +   P+++       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  170  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFI  229
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  230  LVDGFNLLTENLVASFK  246
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

389) fliP in NC_017367


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (390),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 87/197 (45%), Positives = 130/197 (66%), Gaps = 23/197 (11%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDTGIKP  117
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + + +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  118  YMDKKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPDEV-------SL  169
            +       T   +  AL P+++F+ KN+ EK+   F   RNL +   P+++       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  170  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFI  229
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  230  LVDGFNLLTENLVASFK  246
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

390) fliP in NC_008086


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (390),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 87/197 (45%), Positives = 130/197 (66%), Gaps = 23/197 (11%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDTGIKP  117
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + + +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  118  YMDKKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPDEV-------SL  169
            +       T   +  AL P+++F+ KN+ EK+   F   RNL +   P+++       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  170  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFI  229
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  230  LVDGFNLLTENLVASFK  246
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

391) fliP in NC_017733


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (390),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 88/197 (45%), Positives = 130/197 (66%), Gaps = 23/197 (11%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDTGIKP  117
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + + +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  118  YMDKKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPDDV-------SL  169
            +       T   +  AL P+++F+ KN+ EK+   F   RNL +   P+D+       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  170  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFI  229
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  230  LVDGFNLLTENLVASFK  246
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

392) fliP in NC_017372


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (390),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 87/197 (45%), Positives = 130/197 (66%), Gaps = 23/197 (11%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDTGIKP  117
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + + +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  118  YMDKKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPDEV-------SL  169
            +       T   +  AL P+++F+ KN+ EK+   F   RNL +   P+++       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  170  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFI  229
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  230  LVDGFNLLTENLVASFK  246
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

393) fliP in NC_000921


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (389),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 87/197 (45%), Positives = 130/197 (66%), Gaps = 23/197 (11%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDTGIKP  117
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + + +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  118  YMDKKISYTEAFEKSTL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPDDV-------SL  169
            +       T   +  +L P+++F+ KN+ EK+   F   RNL +   P+D+       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  170  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFI  229
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  230  LVDGFNLLTENLVASFK  246
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

394) fliP in NC_017362


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (390),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 87/197 (45%), Positives = 130/197 (66%), Gaps = 23/197 (11%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDTGIKP  117
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + + +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  118  YMDKKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPDEV-------SL  169
            +       T   +  AL P+++F+ KN+ EK+   F   RNL +   P+++       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  170  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFI  229
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  230  LVDGFNLLTENLVASFK  246
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

395) HPOK310_0676 in NC_020509


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (390),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 87/197 (45%), Positives = 130/197 (66%), Gaps = 23/197 (11%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDTGIKP  117
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + + +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  118  YMDKKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPDEV-------SL  169
            +       T   +  AL P+++F+ KN+ EK+   F   RNL +   P+++       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  170  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFI  229
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  230  LVDGFNLLTENLVASFK  246
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

396) fliP in NC_017742


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (390),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 87/197 (45%), Positives = 130/197 (66%), Gaps = 23/197 (11%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDTGIKP  117
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + + +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  118  YMDKKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPDEV-------SL  169
            +       T   +  AL P+++F+ KN+ EK+   F   RNL +   P+++       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  170  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFI  229
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  230  LVDGFNLLTENLVASFK  246
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

397) fliP in NC_017378


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (390),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 87/197 (45%), Positives = 130/197 (66%), Gaps = 23/197 (11%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDTGIKP  117
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + + +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  118  YMDKKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPDEV-------SL  169
            +       T   +  AL P+++F+ KN+ EK+   F   RNL +   P+++       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  170  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFI  229
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  230  LVDGFNLLTENLVASFK  246
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

398) fliP in NC_017379


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (390),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 87/197 (45%), Positives = 130/197 (66%), Gaps = 23/197 (11%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDTGIKP  117
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + + +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  118  YMDKKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPDEV-------SL  169
            +       T   +  AL P+++F+ KN+ EK+   F   RNL +   P+++       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  170  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFI  229
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  230  LVDGFNLLTENLVASFK  246
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

399) fliP in NC_017741


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (390),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 87/197 (45%), Positives = 130/197 (66%), Gaps = 23/197 (11%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDTGIKP  117
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + + +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  118  YMDKKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPDEV-------SL  169
            +       T   +  AL P+++F+ KN+ EK+   F   RNL +   P+++       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  170  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFI  229
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  230  LVDGFNLLTENLVASFK  246
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

400) fliP in NC_017739


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (390),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 87/197 (45%), Positives = 130/197 (66%), Gaps = 23/197 (11%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDTGIKP  117
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + + +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  118  YMDKKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPDEV-------SL  169
            +       T   +  AL P+++F+ KN+ EK+   F   RNL +   P+++       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  170  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFI  229
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  230  LVDGFNLLTENLVASFK  246
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

401) fliP in NC_017354


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (390),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 87/197 (45%), Positives = 130/197 (66%), Gaps = 23/197 (11%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDTGIKP  117
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + + +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  118  YMDKKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPDEV-------SL  169
            +       T   +  AL P+++F+ KN+ EK+   F   RNL +   P+++       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  170  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFI  229
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  230  LVDGFNLLTENLVASFK  246
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

402) K747_07525 in NC_021215


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (390),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 87/197 (45%), Positives = 130/197 (66%), Gaps = 23/197 (11%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDTGIKP  117
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + + +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  118  YMDKKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPDEV-------SL  169
            +       T   +  AL P+++F+ KN+ EK+   F   RNL +   P+++       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  170  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFI  229
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  230  LVDGFNLLTENLVASFK  246
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

403) K751_03955 in NC_021218


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (390),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 87/197 (45%), Positives = 130/197 (66%), Gaps = 23/197 (11%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDTGIKP  117
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + + +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  118  YMDKKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPDEV-------SL  169
            +       T   +  AL P+++F+ KN+ EK+   F   RNL +   P+++       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  170  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFI  229
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  230  LVDGFNLLTENLVASFK  246
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

404) K748_00620 in NC_021882


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (390),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 87/197 (45%), Positives = 130/197 (66%), Gaps = 23/197 (11%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDTGIKP  117
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + + +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  118  YMDKKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPDEV-------SL  169
            +       T   +  AL P+++F+ KN+ EK+   F   RNL +   P+++       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  170  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFI  229
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  230  LVDGFNLLTENLVASFK  246
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

405) K749_02145 in NC_021216


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (390),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 87/197 (45%), Positives = 130/197 (66%), Gaps = 23/197 (11%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDTGIKP  117
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + + +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  118  YMDKKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPDEV-------SL  169
            +       T   +  AL P+++F+ KN+ EK+   F   RNL +   P+++       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  170  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFI  229
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  230  LVDGFNLLTENLVASFK  246
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

406) fliP in NC_013949


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (390),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 83/191 (44%), Positives = 130/191 (69%), Gaps = 11/191 (5%)

Query  65   TSFTRLVIVFSFLRTALGTQQSPPTQILVSLAMVLTFFIMEP---VVRESYQKAIVPYLD  121
            TSF +L +VFS+LR ALG QQ PP   L ++A+VL++FIM P    V+E  +   V+   
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVA---  84

Query  122  AKISYETAFD-RGVQPFKDFMLKNTREKDLA----LFYRIRKLENPKTSADVSLTTLIPA  176
            +     +  D +++ P+++F+ KN+ EK+      L+ R +  +  +     SL  LIPA
Sbjct  85   GAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIPA  144

Query  177  FMISELKTAFQIGFLLYLPFLVIDMVvssilmamgmmmlppvmiSLPFKILIFVLVDGFN  236
            F +S+L  AF+IG+L+YLPFL ID+++S+IL+AMGMMM++P+ ISLPFK+LIF+L +G +
Sbjct  145  FTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWD  204

Query  237  LLIGNLVESFK  247
            L +++LV+SF 
Sbjct  205  LTLAQLVQSFS  215

407) fliP in NC_012491


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (390),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 87/216 (41%), Positives = 150/216 (70%), Gaps = 15/216 (6%)

Query  48   TSTAIQLLLILTVLSVAPAILLLMTSFARIIIVLSFVRNALATQQMPPNQVLIALALFMT  107
              +++QL+ IL +LS+ P I+++ TSF ++ +V+S++RNAL+ QQ+PPN  L ++AL ++
Sbjct  4    PDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLS  63

Query  108  FFIMAPTLGQVNE------TAVQPFMQGKLTQQQAFDAAVIPFKQFMAKQTREKDLALFL  161
            +FIM+PTL  V+E       A  PF  +    +     A+ P++QF+ K++ EK+   F 
Sbjct  64   LFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSK-----ALAPYRQFLQKNSEEKEANYFR  118

Query  162  EYTKAERP----KTIQDIPLNALVPAYAISELKTAFQIGFMIFIPFLVIDmiissilmgm  217
            +  K  +P    + I+  +L  L+PA+++S+L  AF+IG++I++PFL ID++IS+IL++M
Sbjct  119  NLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAM  178

Query  218  gmmmlppvmiSLPFKILLFIMVDGWYLIVKSLLTSF  253
            GMMM++P+ ISLPFK+L+F++ +GW L +  L+ SF
Sbjct  179  GMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

408) fliP in NC_017374


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (389),  Expect = 6e-25, Method: Compositional matrix adjust.
 Identities = 88/197 (45%), Positives = 130/197 (66%), Gaps = 23/197 (11%)

Query  66   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDTGIKP  119
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + + +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  120  YMDKKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPDDV-------SL  171
            +       T   +  AL P+++F+ KN+ EK+   F   RNL +   P+D+       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  172  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFI  231
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  232  LVDGFNLLTENLVASFK  248
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

409) fliP in NC_017360


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (389),  Expect = 6e-25, Method: Compositional matrix adjust.
 Identities = 87/197 (45%), Positives = 130/197 (66%), Gaps = 23/197 (11%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDTGIKP  117
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + + +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  118  YMDKKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPDEV-------SL  169
            +       T   +  AL P+++F+ KN+ EK+   F   RNL +   P+++       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  170  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKVLVFI  229
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  230  LVDGFNLLTENLVASFK  246
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

410) fliP in NC_017357


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (389),  Expect = 6e-25, Method: Compositional matrix adjust.
 Identities = 88/197 (45%), Positives = 130/197 (66%), Gaps = 23/197 (11%)

Query  66   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDTGIKP  119
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + + +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  120  YMDKKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPDDV-------SL  171
            +       T   +  AL P+++F+ KN+ EK+   F   RNL +   P+D+       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  172  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFI  231
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  232  LVDGFNLLTENLVASFK  248
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

411) fliP in NC_014555


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (389),  Expect = 6e-25, Method: Compositional matrix adjust.
 Identities = 87/197 (45%), Positives = 130/197 (66%), Gaps = 23/197 (11%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDTGIKP  117
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + + +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  118  YMDKKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPDEV-------SL  169
            +       T   +  AL P+++F+ KN+ EK+   F   RNL +   P+++       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  170  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFI  229
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  230  LVDGFNLLTENLVASFK  246
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

412) fliP in NC_022130


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (389),  Expect = 6e-25, Method: Compositional matrix adjust.
 Identities = 88/197 (45%), Positives = 130/197 (66%), Gaps = 23/197 (11%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDTGIKP  117
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + + +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  118  YMDKKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPDDV-------SL  169
            +       T   +  AL P+++F+ KN+ EK+   F   RNL +   P+D+       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  170  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFI  229
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  230  LVDGFNLLTENLVASFK  246
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

413) K750_05710 in NC_021217


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (389),  Expect = 6e-25, Method: Compositional matrix adjust.
 Identities = 87/197 (45%), Positives = 130/197 (66%), Gaps = 23/197 (11%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDTGIKP  117
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + + +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  118  YMDKKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPDEV-------SL  169
            +       T   +  AL P+++F+ KN+ EK+   F   RNL +   P+++       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  170  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFI  229
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  230  LVDGFNLLTENLVASFK  246
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

414) fliP in NC_017375


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (388),  Expect = 6e-25, Method: Compositional matrix adjust.
 Identities = 86/197 (44%), Positives = 130/197 (66%), Gaps = 23/197 (11%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDTGIKP  117
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + + +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  118  YMDKKISYTEAFEKSTL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPDEV-------SL  169
            +       T   +  +L P+++F+ KN+ EK+   F   RNL +   P+++       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  170  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFI  229
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  230  LVDGFNLLTENLVASFK  246
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

415) fliP in NC_017376


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (388),  Expect = 6e-25, Method: Compositional matrix adjust.
 Identities = 86/197 (44%), Positives = 130/197 (66%), Gaps = 23/197 (11%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDTGIKP  117
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + + +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  118  YMDKKISYTEAFEKSTL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPDEV-------SL  169
            +       T   +  +L P+++F+ KN+ EK+   F   RNL +   P+++       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  170  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFI  229
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  230  LVDGFNLLTENLVASFK  246
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

416) fliP in NC_014256


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (388),  Expect = 7e-25, Method: Compositional matrix adjust.
 Identities = 87/197 (45%), Positives = 130/197 (66%), Gaps = 23/197 (11%)

Query  76   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDTGIKP  129
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + + +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  130  YMDKKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPDEV-------SL  181
            +       T   +  AL P+++F+ KN+ EK+   F   RNL +   P+++       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  182  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFI  241
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  242  LVDGFNLLTENLVASFK  258
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

417) fliP in NC_011333


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (388),  Expect = 7e-25, Method: Compositional matrix adjust.
 Identities = 87/197 (45%), Positives = 130/197 (66%), Gaps = 23/197 (11%)

Query  76   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDTGIKP  129
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + + +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  130  YMDKKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPDEV-------SL  181
            +       T   +  AL P+++F+ KN+ EK+   F   RNL +   P+++       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  182  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFI  241
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  242  LVDGFNLLTENLVASFK  258
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

418) fliP in NC_017371


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (388),  Expect = 7e-25, Method: Compositional matrix adjust.
 Identities = 88/197 (45%), Positives = 130/197 (66%), Gaps = 23/197 (11%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDTGIKP  117
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + + +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  118  YMDKKISYTEAFEKSAL-PFKKFMLKNTREKDLALFFRIRNLPNPKTPDDV-------SL  169
            +       T   +  AL P+++F+ KN+ EK+   F   RNL +   P+D+       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  170  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFI  229
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  230  LVDGFNLLTENLVASFK  246
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

419) fliP in NC_011498


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (388),  Expect = 7e-25, Method: Compositional matrix adjust.
 Identities = 87/197 (45%), Positives = 130/197 (66%), Gaps = 23/197 (11%)

Query  76   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDTGIKP  129
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + + +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  130  YMDKKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPDEV-------SL  181
            +       T   +  AL P+++F+ KN+ EK+   F   RNL +   P+++       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  182  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFI  241
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  242  LVDGFNLLTENLVASFK  258
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

420) fliP in NC_017359


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (388),  Expect = 7e-25, Method: Compositional matrix adjust.
 Identities = 87/197 (45%), Positives = 130/197 (66%), Gaps = 23/197 (11%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDTGIKP  117
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + + +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  118  YMDKKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPDEV-------SL  169
            +       T   +  AL P+++F+ KN+ EK+   F   RNL +   P+++       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  170  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFI  229
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  230  LVDGFNLLTENLVASFK  246
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

421) fliP in NC_017740


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (388),  Expect = 7e-25, Method: Compositional matrix adjust.
 Identities = 87/197 (45%), Positives = 130/197 (66%), Gaps = 23/197 (11%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDTGIKP  117
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + + +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  118  YMDKKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPDEV-------SL  169
            +       T   +  AL P+++F+ KN+ EK+   F   RNL +   P+++       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  170  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFI  229
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  230  LVDGFNLLTENLVASFK  246
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

422) fliP in NC_010698


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (388),  Expect = 7e-25, Method: Compositional matrix adjust.
 Identities = 87/197 (45%), Positives = 130/197 (66%), Gaps = 23/197 (11%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDTGIKP  117
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + + +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  118  YMDKKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPDEV-------SL  169
            +       T   +  AL P+++F+ KN+ EK+   F   RNL +   P+++       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  170  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFI  229
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  230  LVDGFNLLTENLVASFK  246
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

423) fliP in NC_017926


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  107 bits (389),  Expect = 7e-25, Method: Compositional matrix adjust.
 Identities = 87/197 (45%), Positives = 130/197 (66%), Gaps = 23/197 (11%)

Query  76   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDTGIKP  129
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + + +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  130  YMDKKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPDEV-------SL  181
            +       T   +  AL P+++F+ KN+ EK+   F   RNL +   P+++       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  182  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFI  241
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  242  LVDGFNLLTENLVASFK  258
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

424) fliP in NC_017737


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  106 bits (384),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 87/191 (46%), Positives = 127/191 (67%), Gaps = 11/191 (5%)

Query  64   TSFTRLIVVFGFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYENGIKPYMDKKI  123
            TSF +L VVF++LR ALG QQ PP   L +++L+L++FIM P+L    E      +    
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  124  SYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPNDV-------SLSVLIPA  175
              T   +  AL P+++F+ KN+ EK+   F   RNL +   P+D+       SL +LIPA
Sbjct  88   FWTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSLLILIPA  144

Query  176  FMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
            F +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+L +G +
Sbjct  145  FTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWD  204

Query  236  LLTENLVASFK  246
            L   +LV SF 
Sbjct  205  LTLAQLVQSFS  215

425) fliP in NC_017735


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  106 bits (384),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 87/191 (46%), Positives = 127/191 (67%), Gaps = 11/191 (5%)

Query  64   TSFTRLIVVFGFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYENGIKPYMDKKI  123
            TSF +L VVF++LR ALG QQ PP   L +++L+L++FIM P+L    E      +    
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  124  SYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPNDV-------SLSVLIPA  175
              T   +  AL P+++F+ KN+ EK+   F   RNL +   P+D+       SL +LIPA
Sbjct  88   FWTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSLLILIPA  144

Query  176  FMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFILVDGFN  235
            F +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+L +G +
Sbjct  145  FTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWD  204

Query  236  LLTENLVASFK  246
            L   +LV SF 
Sbjct  205  LTLAQLVQSFS  215

426) fliP in NC_019563


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  106 bits (386),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 87/197 (45%), Positives = 130/197 (66%), Gaps = 23/197 (11%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDTGIKP  117
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + + +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  118  YMDKKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPDEM-------SL  169
            +       T   +  AL P+++F+ KN+ EK+   F   RNL +   P+++       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  170  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFI  229
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  230  LVDGFNLLTENLVASFK  246
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

427) Fbal_1045 in NC_014541


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  106 bits (384),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 89/209 (43%), Positives = 146/209 (70%), Gaps = 5/209 (2%)

Query  44   SLQILGLMTLLTFLPAMVILMTSFTRIIVVLAILRQALGLQQTPSNQVLLGMALFLSLFI  103
            +LQ++G++ LL++LP ++++ TSF ++ VV++ILR+ALG+QQ P+N  L G AL LSLFI
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  104  MTPVLDRVYED-ALVPYMGEQIGALEAMERAKAPVKDFMLSQTRITDINTFVEISGRT--  160
            M P L  V E    V   G  + + E   +A AP ++F+  ++   + N F ++  RT  
Sbjct  67   MGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWP  126

Query  161  -DIA-SVDEVPMTVLIPAFVTSELKTAFQIGFMLFVPFLVIDlvvasvlmamgmmmlspm  218
             DI   +   ++ +LIPAF  S+L  AF+IG+++++PFL IDL+++++L+AMGMMM+SPM
Sbjct  127  EDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPM  186

Query  219  IVSLPFKIMLFVLVDGWNLVMGTLATSFG  247
             +SLPFK+++F+L +GW+L ++ L  SF+
Sbjct  187  TISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

428) BUPH_03734 in NC_018695


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  106 bits (386),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 82/200 (41%), Positives = 133/200 (67%), Gaps = 7/200 (3%)

Query  83   MLSFLPAMVLMMTSFTRIIIVLSLLRQALGTTTTPPNQVLVGLALFLTLFVMSPVLDKAY  142
            +LS+LP +++M TSF ++ +V+S+LR+ALG    PPN  L G+AL L+LF+M+P L  A 
Sbjct  16   LLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTL-LAV  74

Query  143  TDGYKPFSEGTVPMETAV--SHGLAPFKTFMLRQTRESDLALF----ARISHAAPMQGPE  196
             +   P   +  P  T+   S +LAP++ F+ +++ E +   F     R       +   
Sbjct  75   KERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIK  134

Query  197  DVPLSLLVPSFVTSELKTGFQIGFTIFIPFLIIDmvvasvlmsmgmmmvsPATISLPFKL  256
              +L +L+P+F  S+L  +F+IG+ I++PFL ID++++++L++MGMMMVSP TISLPFKL
Sbjct  135  PDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKL  194

Query  257  MLFVLVDGWQLLLGSLAQSF  276
            ++F+L +GW+L L+ L QSF
Sbjct  195  LIFLLAGGWDLTLAQLVQSF  214

429) fliP in NC_007951


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  106 bits (387),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 81/200 (41%), Positives = 134/200 (67%), Gaps = 7/200 (3%)

Query  85   MLSFLPAMVLMMTSFTRIIIVLSLLRQALGTTTTPPNQVLVGLALFLTLFVMSPVLDKAY  144
            +LS+LP +++M TSF ++ +V+S+LR+ALG    PPN  L G+AL L+LF+M+P L  A 
Sbjct  16   LLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTL-LAV  74

Query  145  TDGYKPFSDGTIPMETAV--NRGLAPFKTFMLRQTRESDLALF----ARISHAAPMQGPE  198
             +   P   +  P  T+   +++LAP++ F+ +++ E +   F     R       +   
Sbjct  75   KERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIK  134

Query  199  DVPLSLLVPSFVTSELKTGFQIGFTIFIPFLIIDmvvasvlmsmgmmmvsPATISLPFKL  258
              +L +L+P+F  S+L  +F+IG+ I++PFL ID++++++L++MGMMMVSP TISLPFKL
Sbjct  135  PDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKL  194

Query  259  MLFVLVDGWQLLLGSLAQSF  278
            ++F+L +GW+L L+ L QSF
Sbjct  195  LIFLLAGGWDLTLAQLVQSF  214

430) fliP in NC_010681


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  106 bits (385),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 81/200 (41%), Positives = 134/200 (67%), Gaps = 7/200 (3%)

Query  83   MLSFLPAMLLMMTSFTRIIIVLSLLRQALGTSTTPPNQVLVGLALFLTLFVMSPVLDKAY  142
            +LS+LP +++M TSF ++ +V+S+LR+ALG    PPN  L G+AL L+LF+M+P L  A 
Sbjct  16   LLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTL-LAV  74

Query  143  TDGYKPFSDGTIPMETAV--NRGLAPFKTFMLRQTRESDLALF----ARISHAAPMQGPE  196
             +   P   +  P  T+   +++LAP++ F+ +++ E +   F     R       +   
Sbjct  75   KERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIK  134

Query  197  DVPLSLLVPSFVTSELKTGFQIGFTIFIPFLIIDmvvasvlmsmgmmmvsPATISLPFKL  256
              +L +L+P+F  S+L  +F+IG+ I++PFL ID++++++L++MGMMMVSP TISLPFKL
Sbjct  135  PDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKL  194

Query  257  MLFVLVDGWQLLLGSLAQSF  276
            ++F+L +GW+L L+ L QSF
Sbjct  195  LIFLLAGGWDLTLAQLVQSF  214

431) fliP in NC_017382


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  106 bits (387),  Expect = 9e-25, Method: Compositional matrix adjust.
 Identities = 87/197 (45%), Positives = 130/197 (66%), Gaps = 23/197 (11%)

Query  68   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDTGIKP  121
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + + +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  122  YMDKKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPNEV-------SL  173
            +       T   +  AL P+++F+ KN+ EK+   F   RNL +   P+++       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  174  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFI  233
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  234  LVDGFNLLTENLVASFK  250
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

432) HPOK113_0695 in NC_020508


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  106 bits (386),  Expect = 9e-25, Method: Compositional matrix adjust.
 Identities = 87/197 (45%), Positives = 130/197 (66%), Gaps = 23/197 (11%)

Query  64   TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL------KKAYDTGIKP  117
            TSF +L VVFS+LR ALG QQ PP   L +++L+L++FIM P+L        + + +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  118  YMDKKISYTEAFEKSAL-PFKEFMLKNTREKDLALFFRIRNLPNPKTPNEV-------SL  169
            +       T   +  AL P+++F+ KN+ EK+   F   RNL +   P+++       SL
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSL  138

Query  170  SVLIPAFMISELKTAFQIGFLLYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFI  229
             +LIPAF +S+L  AF+IG+L+YLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+
Sbjct  139  LILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFL  198

Query  230  LVDGFNLLTENLVASFK  246
            L +G +L   +LV SF 
Sbjct  199  LAGGWDLTLAQLVQSFS  215

433) HBZC1_14080 in NC_015674


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  105 bits (381),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 82/194 (43%), Positives = 131/194 (68%), Gaps = 17/194 (8%)

Query  69   TSFIRILVVFSFLRTALGTQQTPPTQILVSLALILTFFIMEP---AAKKSY---EVAIKP  122
            TSF+++ VVFS+LR ALG QQ PP   L ++AL+L++FIM P   A K      +VA  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  123  YLAEKISYSEAFERGIVPFKEFMLKNTREKDLALFFR-----IRHLENPKTPSAVPLSVL  177
            + +          +++ P+++F+ KN+ EK+ A +FR      +  +  +   + +L +L
Sbjct  88   FWTSEWD-----SKALAPYRQFLQKNSEEKE-ANYFRNLIKRTWPEDIKRKIKPDSLLIL  141

Query  178  VPAFMISELKTAFQIGFLLYLPFLVIDMVvssilmamgmmmlppvmiSLPFKILVFILVD  237
            +PAF +S+L  AF+IG+L+YLPFL ID+++S+IL+AMGMMM++P+ ISLPFK+L+F+L +
Sbjct  142  IPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAG  201

Query  238  GFNLLVENLVASFK  251
            G +L + +LV SF 
Sbjct  202  GWDLTLAQLVQSFS  215

434) fliP in NC_010002


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  105 bits (383),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 83/200 (42%), Positives = 137/200 (69%), Gaps = 7/200 (3%)

Query  67   LSFLPAILLMMTGFTRIVIVLSLMRQALGTQSAPPNQVIIGLSLFLTLFVMGPTLDRVYQ  126
            LS+LP I++M T+F ++ +V+S++R+ALG Q  PPN  + G++L L+LF+MGPTL  V +
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  127  EAYVPYTTNAVTF--EQAIEKAEAPMRDFMLKQTRQSDFALFARLAK--LDAGVTSETAP  182
            E   P    +  F   +   KA AP R+F+ K++ + +   F  L K     ++     P
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKP  135

Query  183  --LRVLVPAFVTSELKTAFQIGFMIFIPFLVIDmvvssilmslgmmmlspvlvALPFKLM  240
              L +L+PAF  S+L  AF+IG++I++PFL ID+++S+IL+++GMMM+SP+ ++LPFKL+
Sbjct  136  DSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLL  195

Query  241  LFVLADGWNLLIGSLAASFA  260
            +F+LA+GW+L ++ L  SF+
Sbjct  196  IFLLAGGWDLTLAQLVQSFS  215

435) DelCs14_0586 in NC_015563


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  105 bits (383),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 83/200 (42%), Positives = 137/200 (69%), Gaps = 7/200 (3%)

Query  67   LSFLPAILLMMTGFTRIVIVLSLMRQALGTQSAPPNQVIIGLSLFLTLFVMGPTLDRVYQ  126
            LS+LP I++M T+F ++ +V+S++R+ALG Q  PPN  + G++L L+LF+MGPTL  V +
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  127  EAYVPYTTNAVTF--EQAIEKAEAPMRDFMLKQTRQSDFALFARLAK--LDAGVTSETAP  182
            E   P    +  F   +   KA AP R+F+ K++ + +   F  L K     ++     P
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKP  135

Query  183  --LRVLVPAFVTSELKTAFQIGFMIFIPFLVIDmvvssilmslgmmmlspvlvALPFKLM  240
              L +L+PAF  S+L  AF+IG++I++PFL ID+++S+IL+++GMMM+SP+ ++LPFKL+
Sbjct  136  DSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLL  195

Query  241  LFVLADGWNLLIGSLAASFA  260
            +F+LA+GW+L ++ L  SF+
Sbjct  196  IFLLAGGWDLTLAQLVQSFS  215

436) CtCNB1_0468 in NC_013446


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  105 bits (383),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 81/200 (41%), Positives = 138/200 (69%), Gaps = 7/200 (3%)

Query  55   LSFLPAILLLMTGFTRIVIVLSLLRQALGTQSAPPNQVVIGLSLFLTMFVMGPTLDKVYQ  114
            LS+LP I+++ T+F ++ +V+S+LR+ALG Q  PPN  + G++L L++F+MGPTL  V +
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  115  DAYLPYTQNSISF--EQAMEKAEAPMRGFMLKQTRQSDFALFKRLAKL----DANVTAET  168
            +   P    + +F   +   KA AP R F+ K++ + +   F+ L K     D +     
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKP  135

Query  169  APLRVLVPAFVTSELKTAFQIGFMIFIPFLVIDmvvssilmslgmmmlspvlvALPFKLM  228
             +L +L+PAF  S+L  AF+IG++I++PFL ID+++S+IL+++GMMM+SP+ ++LPFKL+
Sbjct  136  DSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLL  195

Query  229  LFVLADGWNLIIGSLAASFA  248
            +F+LA+GW+L ++ L  SF+
Sbjct  196  IFLLAGGWDLTLAQLVQSFS  215

437) fliP in NC_018870


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  105 bits (380),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 84/196 (43%), Positives = 135/196 (69%), Gaps = 17/196 (8%)

Query  76   MMTSFTRIIVVFSFLRSALATQQMPPNQVLIGIALFLTFFIMAPT-------WQAVNRDA  128
            M TSF ++ VVFS+LR+AL+ QQ+PPN  L G+AL L++FIM+PT       W++V+  +
Sbjct  26   MGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAG  85

Query  129  LQPFLRGEIDQEVAFERGMEPIRTFMFKQTREKDLALFVSLAKIPRP----RTYEDIPNY  184
              PF  +E D      +++ P R F+ K++ EK+   F +L K  +P    R     +  
Sbjct  86   -APFWTSEWD-----SKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLL  139

Query  185  VLIPAFAISELKTAFQIGFMIYIPFLVIDMIVAstlmsmgmlmlppmmislpFKILLFIM  244
            +LIPAF++S+L  AF+IG++IY+PFL ID+++++ L++MGM+M++PM ISLPFK+L+F++
Sbjct  140  ILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLL  199

Query  245  VDGWHLLVRSLILSFS  260
             +GW+L +  L+ SFS
Sbjct  200  AGGWDLTLAQLVQSFS  215

438) fliP in NC_008782


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  105 bits (381),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 82/200 (41%), Positives = 137/200 (69%), Gaps = 7/200 (3%)

Query  57   LSFLPAVLLMMTGFTRIVIVLSLLRQAIGTQSAPPNQVIIGLSLFLTLFVMGPTLDKVYQ  116
            LS+LP +++M T+F ++ +V+S+LR+A+G Q  PPN  + G++L L+LF+MGPTL  V +
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  117  EAYVPYTTNAITF--EQAIQKAEAPMRGFMLKQTRQSDFALFARLAK--LDEGVTAETAP  172
            E   P    +  F   +   KA AP R F+ K++ + +   F  L K    E++     P
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKP  135

Query  173  --LRVLVPAFVTSELKSAFQIGFMIFIPFLIIDmvvssvlmslgmmmlspvlvALPFKLM  230
              L +L+PAF  S+L  AF+IG++I++PFL ID+++S++L+++GMMM+SP+ ++LPFKL+
Sbjct  136  DSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLL  195

Query  231  LFVLADGWNLLIGSLAASFA  250
            +F+LA+GW+L ++ L  SF+
Sbjct  196  IFLLAGGWDLTLAQLVQSFS  215

439) B565_1109 in NC_015424


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  105 bits (381),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 88/216 (41%), Positives = 153/216 (71%), Gaps = 20/216 (9%)

Query  51   TLQVLALMTALSFLPAMVIMMTSFTRIIVVLGILRQAIGLQQSPSNQVLIGIALFMSFFI  110
             LQ+++++  LS+LP +++M TSF ++ VV++ILR+A+G+QQ P+N  L G+AL +S+FI
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  111  MSPVLDRIND--EALQ----PYLAETIQAKEALERAELPIHQFMLAQTRIKDLNTFMEIA  164
            M+P L  +++  +++Q    P+ +   ++K AL     P +QF+  ++  K+ N F ++ 
Sbjct  67   MGPTLLAVKERWHPVQVAGAPFWTSEWDSK-ALA----PYRQFLQKNSEEKEANYFRNL-  120

Query  165  NVQVEKPADV-------PLRVLIPAFVTSELKTAFQIGFMLFLPFLVIDLVVasilmamg  217
             ++   P D+       +L +LIPAF  S+L  AF+IG++++LPFL IDL++++IL+AMG
Sbjct  121  -IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMG  179

Query  218  mmmlspmiVSLPFKLMLFVMVDGWNLILGSLANSFG  253
            MMM+SPM +SLPFKL++F++ +GW+L L+ L +SF+
Sbjct  180  MMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

440) Alide_3847 in NC_014910


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  105 bits (380),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 82/200 (41%), Positives = 140/200 (70%), Gaps = 7/200 (3%)

Query  57   LSFLPAVLLMMTGFTRIVIVLSLLRQAIGTQQAPPNQVVVGLSLFLTLFVMGPTLDKVYQ  116
            LS+LP +++M T+F ++ +V+S+LR+A+G QQ PPN  + G++L L+LF+MGPTL  V +
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  117  EAYVPYTTNALSF--EQALAKAEAPMRGFMLKQTRQSDFTLFARLAK--LDEGVTAETAP  172
            E   P    + +F   +  +KA AP R F+ K++ + +   F  L K    E++     P
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKP  135

Query  173  --LRVLVPAFVTSELKTAFQIGFMVFIPFLIIDmvvssvlmslgmmmlspvlvALPFKLM  230
              L +L+PAF  S+L  AF+IG+++++PFL ID+++S++L+++GMMM+SP+ ++LPFKL+
Sbjct  136  DSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLL  195

Query  231  LFVLADGWNLLIGSLAASFA  250
            +F+LA+GW+L ++ L  SF+
Sbjct  196  IFLLAGGWDLTLAQLVQSFS  215

441) Alide2_4193 in NC_015422


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  105 bits (380),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 82/200 (41%), Positives = 140/200 (70%), Gaps = 7/200 (3%)

Query  57   LSFLPAVLLMMTGFTRIVIVLSLLRQAIGTQQAPPNQVVVGLSLFLTLFVMGPTLDKVYQ  116
            LS+LP +++M T+F ++ +V+S+LR+A+G QQ PPN  + G++L L+LF+MGPTL  V +
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  117  EAYVPYTTNALSF--EQALAKAEAPMRGFMLKQTRQSDFALFARLAK--LDEGVTAETAP  172
            E   P    + +F   +  +KA AP R F+ K++ + +   F  L K    E++     P
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKP  135

Query  173  --LRVLVPAFVTSELKTAFQIGFMVFIPFLIIDmvvssvlmslgmmmlspvlvALPFKLM  230
              L +L+PAF  S+L  AF+IG+++++PFL ID+++S++L+++GMMM+SP+ ++LPFKL+
Sbjct  136  DSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLL  195

Query  231  LFVLADGWNLLIGSLAASFA  250
            +F+LA+GW+L ++ L  SF+
Sbjct  196  IFLLAGGWDLTLAQLVQSFS  215

442) fliP in NC_011992


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  104 bits (378),  Expect = 4e-24, Method: Compositional matrix adjust.
 Identities = 81/200 (41%), Positives = 137/200 (69%), Gaps = 7/200 (3%)

Query  57   LSFLPAVLLMMTGFTRIVIVLSLLRQAIGTQSAPPNQVIIGLSLFLTLFVMGPTLDKVYQ  116
            LS+LP +++M T+F ++ +V+S+LR+A+G Q  PPN  + G++L L+LF+MGPTL  V +
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  117  EAYVPYTTNAITF--EQAIQRAEAPMRGFMLKQTRQSDFALFARLAK--LDEGVTAETAP  172
            E   P    +  F   +   +A AP R F+ K++ + +   F  L K    E++     P
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKP  135

Query  173  --LRVLVPAFVTSELKSAFQIGFMIFIPFLIIDmvvssvlmslgmmmlspvlvALPFKLM  230
              L +L+PAF  S+L  AF+IG++I++PFL ID+++S++L+++GMMM+SP+ ++LPFKL+
Sbjct  136  DSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLL  195

Query  231  LFVLADGWNLLIGSLAASFA  250
            +F+LA+GW+L ++ L  SF+
Sbjct  196  IFLLAGGWDLTLAQLVQSFS  215

443) Mahau_0870 in NC_015520


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  104 bits (379),  Expect = 4e-24, Method: Compositional matrix adjust.
 Identities = 77/192 (41%), Positives = 129/192 (68%), Gaps = 15/192 (7%)

Query  75   TSFTRIIVVLSFVRSALGLQQMPPNQVIIGLALFLTFFTMAPVATQIN------QTALQP  128
            TSF ++ VV+S++R+ALG+QQ+PPN  + G+AL L++F M+P    ++      Q A  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  129  YMNGQIEQQQAIDNAMVPLREFMFKETREKDLNLFVNLSGMDKPEQLSDISST----VLI  184
            +  ++ +      +A+ P R+F+ K++ EK+ N F NL     PE++          +LI
Sbjct  88   FWTSEWD-----SKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILI  142

Query  185  PAFIISELKTAFQIGFLIYVPFIVIDMVVATTLmsmgmmmippvmisLPFKVLLFIMVDG  244
            PAF +S+L  AF+IG+LIY+PF+ ID++++  L++MGMMM++P+ ISLPFK+L+F++ +G
Sbjct  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202

Query  245  WNLVVQSLITSF  256
            W+L +  L+ SF
Sbjct  203  WDLTLAQLVQSF  214

444) fliP in NC_008570


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  104 bits (376),  Expect = 6e-24, Method: Compositional matrix adjust.
 Identities = 88/216 (41%), Positives = 150/216 (70%), Gaps = 20/216 (9%)

Query  52   TLQVLALMTALSFLPAIVIMMTSFTRIIIVLGILRQAIGLQQSPSNQVLIGIALFMSFFI  111
             LQ+++++  LS+LP I++M TSF ++ +V++ILR+A+G+QQ P+N  L G+AL +S+FI
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  112  MSPVL----DRINNEALQ--PYLAETIQAKEALEKAELPIHQFMLAQTRIKDLNTFMEIA  165
            M+P L    +R +   +   P+ +   ++K AL     P +QF+  ++  K+ N F ++ 
Sbjct  67   MGPTLLAVKERWHPVQVAGAPFWTSEWDSK-ALA----PYRQFLQKNSEEKEANYFRNL-  120

Query  166  NVQVDKPADV-------PLRVLIPAFVTSELKTAFQIGFMLFLPFLVIDLVVAsilmamg  218
             ++   P D+       +L +LIPAF  S+L  AF+IG++++LPFL IDL++++IL+AMG
Sbjct  121  -IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMG  179

Query  219  mmmlspmlvslPFKLMLFVMVDGWNLILGSLANSFG  254
            MMM+SPM +SLPFKL++F++ +GW+L L+ L +SF+
Sbjct  180  MMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

445) fliP in NC_018632


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  103 bits (372),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 88/210 (42%), Positives = 142/210 (68%), Gaps = 17/210 (8%)

Query  48   LFIMTALSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPV  107
            LF+++ L+LI   I+M TSF ++ VV+SILR+A+G+QQ P+N  L G +L LS+FIM+P 
Sbjct  14   LFLLSILPLI---IVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPT  70

Query  108  FEEVNER------ALQPYLNEQLTSLDALEQAKGPMRAFMLSQTRVKDLETF---VRIAG  158
            +  V+ER      A  P+   +  S     +A +P R F+  ++  K+ + F   ++ + 
Sbjct  71   LLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLIKRTW  125

Query  159  DEGKYADTNEVPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlsp  218
             E+     +  +L ILIPAF  S+L  AF+IG+++++PFL IDL++++IL+AMGMMM+SP
Sbjct  126  PEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSP  185

Query  219  miVSLPFKLMLFVLVDGWNLIFGTLATSFG  248
            M +SLPFKL++F+L +GW+L ++ L  SF+
Sbjct  186  MTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

446) fliP in NC_018692


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  103 bits (372),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 88/210 (42%), Positives = 142/210 (68%), Gaps = 17/210 (8%)

Query  48   LFIMTALSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPV  107
            LF+++ L+LI   I+M TSF ++ VV+SILR+A+G+QQ P+N  L G +L LS+FIM+P 
Sbjct  14   LFLLSILPLI---IVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPT  70

Query  108  FEEVNER------ALQPYLNEQLTSLDALEQAKGPMRAFMLSQTRVKDLETF---VRIAG  158
            +  V+ER      A  P+   +  S     +A +P R F+  ++  K+ + F   ++ + 
Sbjct  71   LLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLIKRTW  125

Query  159  DEGKYADTNEVPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlsp  218
             E+     +  +L ILIPAF  S+L  AF+IG+++++PFL IDL++++IL+AMGMMM+SP
Sbjct  126  PEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSP  185

Query  219  miVSLPFKLMLFVLVDGWNLIFGTLATSFG  248
            M +SLPFKL++F+L +GW+L ++ L  SF+
Sbjct  186  MTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

447) fliP in NC_018678


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  103 bits (372),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 88/210 (42%), Positives = 142/210 (68%), Gaps = 17/210 (8%)

Query  48   LFIMTALSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPV  107
            LF+++ L+LI   I+M TSF ++ VV+SILR+A+G+QQ P+N  L G +L LS+FIM+P 
Sbjct  14   LFLLSILPLI---IVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPT  70

Query  108  FEEVNER------ALQPYLNEQLTSLDALEQAKGPMRAFMLSQTRVKDLETF---VRIAG  158
            +  V+ER      A  P+   +  S     +A +P R F+  ++  K+ + F   ++ + 
Sbjct  71   LLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLIKRTW  125

Query  159  DEGKYADTNEVPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlsp  218
             E+     +  +L ILIPAF  S+L  AF+IG+++++PFL IDL++++IL+AMGMMM+SP
Sbjct  126  PEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSP  185

Query  219  miVSLPFKLMLFVLVDGWNLIFGTLATSFG  248
            M +SLPFKL++F+L +GW+L ++ L  SF+
Sbjct  186  MTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

448) BN341_p1310 in NC_019674


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  103 bits (373),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 81/195 (42%), Positives = 130/195 (67%), Gaps = 19/195 (9%)

Query  65   TSFIRLIVVFSFLRTALGTQQTPPTQILVSLALILTFFIMEP---AAKKSY---DTAIKP  118
            TSF++L VVFS+LR ALG QQ PP   L ++AL+L++FIM P   A K      + A  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  119  YLAEKISYTEAFEV-GIVPFKEFMLQNTREKDLALFFR-----IRHLENPKTPSAVPLTV  172
            +       T   +  ++ P+++F+ +N+ EK+ A +FR      +  +  +   + +L +
Sbjct  88   F------WTSEWDSKALAPYRQFLQKNSEEKE-ANYFRNLIKRTWPEDIKRKIKPDSLLI  140

Query  173  LVPAFMISELKTGFQIGFLLYLPFLVIDMVvssilmamgmmmlppvmiSLPFKILVFILV  232
            L+PAF +S+L  +F+IG+L+YLPFL ID+++S+IL+AMGMMM++P+ ISLPFK+L+F+L 
Sbjct  141  LIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLA  200

Query  233  DGFNLLVENLVASFK  247
            +G +L + +LV SF 
Sbjct  201  GGWDLTLAQLVQSFS  215

449) fliP in NC_021290


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  103 bits (372),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 87/216 (41%), Positives = 150/216 (70%), Gaps = 20/216 (9%)

Query  52   TLQVLALMTALSFLPAMVIMMTSFTRIIIVLGILRQAIGLQQSPSNQVLIGIALFMSFFI  111
             LQ+++++  LS+LP +++M TSF ++ +V++ILR+A+G+QQ P+N  L G+AL +S+FI
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  112  MSPVL----DRINNEALQ--PYLAETIQAKEALEKAELPIHQFMLAQTRIKDLNTFMEIA  165
            M+P L    +R +   +   P+ +   ++K AL     P +QF+  ++  K+ N F ++ 
Sbjct  67   MGPTLLAVKERWHPVQVAGAPFWTSEWDSK-ALA----PYRQFLQKNSEEKEANYFRNL-  120

Query  166  NVQVDKPADV-------PLRVLIPAFVTSELKTAFQIGFMLFLPFLVIDLVVAsilmamg  218
             ++   P D+       +L +LIPAF  S+L  AF+IG++++LPFL IDL++++IL+AMG
Sbjct  121  -IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMG  179

Query  219  mmmlspmlvslPFKLMLFVMVDGWNLILGSLANSFG  254
            MMM+SPM +SLPFKL++F++ +GW+L L+ L +SF+
Sbjct  180  MMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

450) fliP in NC_010995


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  103 bits (373),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 86/212 (41%), Positives = 149/212 (71%), Gaps = 13/212 (6%)

Query  76   LQILALMTALSFLPAILMMMTSFTRIIIVFSILRQALGLQQSPSNQILIGLALFLTLFIM  135
            LQ+++++  LS+LP I++M TSF ++ +VFSILR+ALG+QQ P+N  L G+AL L+LFIM
Sbjct  8    LQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIM  67

Query  136  KPVF--DQANHDALQPYINGQISAQEALAKTAAPFHRFMLAQTRESDILLFVGIAKHPPI  193
             P +   +   +++Q    + + + E  +K+ AP+++F+  ++ E +   F  + K+   
Sbjct  68   GPTLLAVKERWHPVQV-AGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKR---  123

Query  194  ATPEDI-------PFTILAPAFIISELKTAfqigfiifipfliidiVVSSVLMAMGMMML  246
            + PEDI       ++ IL PAF +S+L  AF+IG++I++PFL ID+++S++L+AMGMMM+
Sbjct  124  TWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMV  183

Query  247  SPLIISLPFKIMLFVLVDGWAMIVGTLAASYG  278
            SP+ ISLPFK+++F+L +GW + ++ L  S++
Sbjct  184  SPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

451) fliP in NC_010674


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  103 bits (375),  Expect = 7e-24, Method: Compositional matrix adjust.
 Identities = 82/202 (41%), Positives = 144/202 (72%), Gaps = 8/202 (3%)

Query  64   ILAVLPSIVIMLTSFTRIVIVFSFIKSAMGVQQAIPNQILTGLALFLTIFIMSPVYNEVN  123
            +L++LP I++M TSF ++ +VFS++++A+G+QQ  PN  L G+AL L++FIM+P    V+
Sbjct  16   LLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVK  75

Query  124  TKAFQPYVEQSITQEEAIEIGSK---PIKDFMLKQTREKDLELFVE-INNVNKEELTRES  179
             +  +P V+ + +   + E +SK   P ++F+ K++ EK+ + F + I+    E++ R  
Sbjct  76   ER-WHP-VQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKI  133

Query  180  VP--FTTLIPAFAISELKTAFQMGFLIYLPFIVIDmvvasvlmsmgmmmlppamvSLPFK  237
             P  +  LIPAF++S+L  AF++G+LIYLPF+ ID++++++L++MGMMM++P  +SLPFK
Sbjct  134  KPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFK  193

Query  238  LLLFVMVDGWYLLVKSLIMSFS  259
            LL+F++ +GW L +  L+ SFS
Sbjct  194  LLIFLLAGGWDLTLAQLVQSFS  215

452) Sphch_2655 in NC_015593


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  103 bits (375),  Expect = 9e-24, Method: Compositional matrix adjust.
 Identities = 80/193 (42%), Positives = 130/193 (68%), Gaps = 15/193 (7%)

Query  90   TSFTRIIIVLSLLRQALGLQQTPPNQvlvglslflslfvMRPAIDQINAQAFDPYGKGQI  149
            TSF ++ +V+S+LR+ALG+QQ PPN  L G++L LSLF+M P++  ++ +  +P   +  
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKER-WHPVQVAGA  86

Query  150  PIEEAVGRSAKVL---HGFMTKQTRETDLKLFQNLAEAPAFRTPADI-------PFSILL  199
            P+  +  + +K L   + F+ K++ E + + F+NL        P DI       ++ IL+
Sbjct  87   PFWTS-EWDSKALAPYRQFLQKNSEEKEANYFRNLIKRT---WPEDIKRKIKPDSLLILI  142

Query  200  PAFVTSELKTAFQIGFMIFLPFLIIDLVVASTLMALGMMMLSPTIISMPFKLLLFVLVDG  259
            PAF  S+L  AF+IG++I+LPFL IDL++++ L+A+GMMM+SP  IS+PFKLL+F+L +G
Sbjct  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202

Query  260  WALTMGSLAGSFA  272
            W LT++ L  SF+
Sbjct  203  WDLTLAQLVQSFS  215

453) fliP in NC_010723


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  103 bits (374),  Expect = 9e-24, Method: Compositional matrix adjust.
 Identities = 82/202 (41%), Positives = 144/202 (72%), Gaps = 8/202 (3%)

Query  64   ILAVLPSIVIMLTSFTRIVIVFSFIKSAMGVQQAIPNQILTGLALFLTIFIMSPVYNEVN  123
            +L++LP I++M TSF ++ +VFS++++A+G+QQ  PN  L G+AL L++FIM+P    V+
Sbjct  16   LLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVK  75

Query  124  TKAFQPYIEQSITQEEAIEIGSK---PIKDFMLKQTREKDLELFVE-INNVDKEELTREN  179
             +  +P ++ + +   + E +SK   P ++F+ K++ EK+ + F + I+    E++ R  
Sbjct  76   ER-WHP-VQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKI  133

Query  180  IP--FTTLIPAFAISELKTAFQIGFLIYLPFIVIDmvvasvlmsmgmmmlppamvSLPFK  237
             P  +  LIPAF++S+L  AF+IG+LIYLPF+ ID++++++L++MGMMM++P  +SLPFK
Sbjct  134  KPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFK  193

Query  238  LLLFVMVDGWYLLVKSLIMSFS  259
            LL+F++ +GW L +  L+ SFS
Sbjct  194  LLIFLLAGGWDLTLAQLVQSFS  215

454) fliP in NC_019393


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  102 bits (370),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 88/210 (42%), Positives = 141/210 (68%), Gaps = 17/210 (8%)

Query  48   LFIMTALSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPV  107
            LF+++ L+LI   I+M TSF ++ VV+SILR+A+G+QQ P+N  L G +L LS+FIM+P 
Sbjct  14   LFLLSILPLI---IVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPT  70

Query  108  FEEVNER------ALQPYLNEQLTSLDALEQAKGPMRAFMLSQTRVKDLETF---VRIAG  158
            +  V+ER      A  P+   +  S     +A +P R F+  ++  K+ + F   ++ + 
Sbjct  71   LLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLIKRTW  125

Query  159  DEGKYADTDEVPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlsp  218
             E+        +L ILIPAF  S+L  AF+IG+++++PFL IDL++++IL+AMGMMM+SP
Sbjct  126  PEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSP  185

Query  219  miVSLPFKLMLFVLVDGWNLIFGTLATSFG  248
            M +SLPFKL++F+L +GW+L ++ L  SF+
Sbjct  186  MTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

455) fliP in NC_018679


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  102 bits (371),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 88/210 (42%), Positives = 141/210 (68%), Gaps = 17/210 (8%)

Query  48   LFIMTALSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPV  107
            LF+++ L+LI   I+M TSF ++ VV+SILR+A+G+QQ P+N  L G +L LS+FIM+P 
Sbjct  14   LFLLSILPLI---IVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPT  70

Query  108  FEEVNER------ALQPYLNEQLTSLDALEQAKGPMRAFMLSQTRVKDLETF---VRIAG  158
            +  V+ER      A  P+   +  S     +A +P R F+  ++  K+ + F   ++ + 
Sbjct  71   LLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLIKRTW  125

Query  159  DEGKYADTDEVPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlsp  218
             E+        +L ILIPAF  S+L  AF+IG+++++PFL IDL++++IL+AMGMMM+SP
Sbjct  126  PEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSP  185

Query  219  miVSLPFKLMLFVLVDGWNLIFGTLATSFG  248
            M +SLPFKL++F+L +GW+L ++ L  SF+
Sbjct  186  MTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

456) MADE_1005950 in NC_011138


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  102 bits (370),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 88/210 (42%), Positives = 141/210 (68%), Gaps = 17/210 (8%)

Query  48   LFIMTALSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPV  107
            LF+++ L+LI   I+M TSF ++ VV+SILR+A+G+QQ P+N  L G +L LS+FIM+P 
Sbjct  14   LFLLSILPLI---IVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPT  70

Query  108  FEEVNER------ALQPYLNEQLTSLDALEQAKGPMRAFMLSQTRVKDLETF---VRIAG  158
            +  V+ER      A  P+   +  S     +A +P R F+  ++  K+ + F   ++ + 
Sbjct  71   LLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLIKRTW  125

Query  159  DEGKYADTDEVPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlsp  218
             E+        +L ILIPAF  S+L  AF+IG+++++PFL IDL++++IL+AMGMMM+SP
Sbjct  126  PEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSP  185

Query  219  miVSLPFKLMLFVLVDGWNLIFGTLATSFG  248
            M +SLPFKL++F+L +GW+L ++ L  SF+
Sbjct  186  MTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

457) fliP in NC_021716


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  102 bits (370),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 88/210 (42%), Positives = 141/210 (68%), Gaps = 17/210 (8%)

Query  48   LFIMTALSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPV  107
            LF+++ L+LI   I+M TSF ++ VV+SILR+A+G+QQ P+N  L G +L LS+FIM+P 
Sbjct  14   LFLLSILPLI---IVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPT  70

Query  108  FEEVNER------ALQPYLNEQLTSLDALEQAKGPMRAFMLSQTRVKDLETF---VRIAG  158
            +  V+ER      A  P+   +  S     +A +P R F+  ++  K+ + F   ++ + 
Sbjct  71   LLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLIKRTW  125

Query  159  DEGKYADTDEVPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlsp  218
             E+        +L ILIPAF  S+L  AF+IG+++++PFL IDL++++IL+AMGMMM+SP
Sbjct  126  PEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSP  185

Query  219  miVSLPFKLMLFVLVDGWNLIFGTLATSFG  248
            M +SLPFKL++F+L +GW+L ++ L  SF+
Sbjct  186  MTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

458) fliP in NC_021710


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  102 bits (370),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 88/210 (42%), Positives = 141/210 (68%), Gaps = 17/210 (8%)

Query  48   LFIMTALSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPV  107
            LF+++ L+LI   I+M TSF ++ VV+SILR+A+G+QQ P+N  L G +L LS+FIM+P 
Sbjct  14   LFLLSILPLI---IVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPT  70

Query  108  FEEVNER------ALQPYLNEQLTSLDALEQAKGPMRAFMLSQTRVKDLETF---VRIAG  158
            +  V+ER      A  P+   +  S     +A +P R F+  ++  K+ + F   ++ + 
Sbjct  71   LLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLIKRTW  125

Query  159  DEGKYADTDEVPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlsp  218
             E+        +L ILIPAF  S+L  AF+IG+++++PFL IDL++++IL+AMGMMM+SP
Sbjct  126  PEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSP  185

Query  219  miVSLPFKLMLFVLVDGWNLIFGTLATSFG  248
            M +SLPFKL++F+L +GW+L ++ L  SF+
Sbjct  186  MTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

459) fliP in NC_021717


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  102 bits (370),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 88/210 (42%), Positives = 141/210 (68%), Gaps = 17/210 (8%)

Query  48   LFIMTALSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPV  107
            LF+++ L+LI   I+M TSF ++ VV+SILR+A+G+QQ P+N  L G +L LS+FIM+P 
Sbjct  14   LFLLSILPLI---IVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPT  70

Query  108  FEEVNER------ALQPYLNEQLTSLDALEQAKGPMRAFMLSQTRVKDLETF---VRIAG  158
            +  V+ER      A  P+   +  S     +A +P R F+  ++  K+ + F   ++ + 
Sbjct  71   LLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLIKRTW  125

Query  159  DEGKYADTDEVPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlsp  218
             E+        +L ILIPAF  S+L  AF+IG+++++PFL IDL++++IL+AMGMMM+SP
Sbjct  126  PEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSP  185

Query  219  miVSLPFKLMLFVLVDGWNLIFGTLATSFG  248
            M +SLPFKL++F+L +GW+L ++ L  SF+
Sbjct  186  MTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

460) fliP in NC_021712


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  102 bits (370),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 88/210 (42%), Positives = 141/210 (68%), Gaps = 17/210 (8%)

Query  48   LFIMTALSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPV  107
            LF+++ L+LI   I+M TSF ++ VV+SILR+A+G+QQ P+N  L G +L LS+FIM+P 
Sbjct  14   LFLLSILPLI---IVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPT  70

Query  108  FEEVNER------ALQPYLNEQLTSLDALEQAKGPMRAFMLSQTRVKDLETF---VRIAG  158
            +  V+ER      A  P+   +  S     +A +P R F+  ++  K+ + F   ++ + 
Sbjct  71   LLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLIKRTW  125

Query  159  DEGKYADTDEVPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlsp  218
             E+        +L ILIPAF  S+L  AF+IG+++++PFL IDL++++IL+AMGMMM+SP
Sbjct  126  PEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSP  185

Query  219  miVSLPFKLMLFVLVDGWNLIFGTLATSFG  248
            M +SLPFKL++F+L +GW+L ++ L  SF+
Sbjct  186  MTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

461) fliP in NC_021714


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  102 bits (370),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 88/210 (42%), Positives = 141/210 (68%), Gaps = 17/210 (8%)

Query  48   LFIMTALSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPV  107
            LF+++ L+LI   I+M TSF ++ VV+SILR+A+G+QQ P+N  L G +L LS+FIM+P 
Sbjct  14   LFLLSILPLI---IVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPT  70

Query  108  FEEVNER------ALQPYLNEQLTSLDALEQAKGPMRAFMLSQTRVKDLETF---VRIAG  158
            +  V+ER      A  P+   +  S     +A +P R F+  ++  K+ + F   ++ + 
Sbjct  71   LLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLIKRTW  125

Query  159  DEGKYADTDEVPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlsp  218
             E+        +L ILIPAF  S+L  AF+IG+++++PFL IDL++++IL+AMGMMM+SP
Sbjct  126  PEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSP  185

Query  219  miVSLPFKLMLFVLVDGWNLIFGTLATSFG  248
            M +SLPFKL++F+L +GW+L ++ L  SF+
Sbjct  186  MTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

462) fliP in NC_021713


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  102 bits (370),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 88/210 (42%), Positives = 141/210 (68%), Gaps = 17/210 (8%)

Query  48   LFIMTALSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPV  107
            LF+++ L+LI   I+M TSF ++ VV+SILR+A+G+QQ P+N  L G +L LS+FIM+P 
Sbjct  14   LFLLSILPLI---IVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPT  70

Query  108  FEEVNER------ALQPYLNEQLTSLDALEQAKGPMRAFMLSQTRVKDLETF---VRIAG  158
            +  V+ER      A  P+   +  S     +A +P R F+  ++  K+ + F   ++ + 
Sbjct  71   LLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLIKRTW  125

Query  159  DEGKYADTDEVPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlsp  218
             E+        +L ILIPAF  S+L  AF+IG+++++PFL IDL++++IL+AMGMMM+SP
Sbjct  126  PEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSP  185

Query  219  miVSLPFKLMLFVLVDGWNLIFGTLATSFG  248
            M +SLPFKL++F+L +GW+L ++ L  SF+
Sbjct  186  MTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

463) fliP in NC_005090


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  102 bits (369),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 81/193 (42%), Positives = 133/193 (69%), Gaps = 15/193 (7%)

Query  65   TSFTRLIIVFSFLRTAMGTQQSPPTQLLVSLAMVLTFFIMEPI---AKQSY---EIGIKP  118
            TSF +L +VFS+LR A+G QQ PP   L ++A+VL++FIM P     K+     +++  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  119  YLAKEIPYDVAFVKSVGPFKEFMIRNTREKDLA----LFYRIRGMENPQTIEDIPLTMVI  174
            + + E   D    K+++P+++F+ +N+ EK+      L+ R +  +  + I   +L ++I
Sbjct  88   FWTSE--WDS---KALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILI  142

Query  175  PAFMISEMKTAFQIGFLIYLPFLVIDMVissilmamgmmmlppvmisLPFKILVFVLVDG  234
            PAF +S++  AF+IG+LIYLPFL ID++IS+IL+AMGMMM++P+ ISLPFK+L+F+L +G
Sbjct  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202

Query  235  FNLLVGSLVESFK  247
             +L ++ LV+SF 
Sbjct  203  WDLTLAQLVQSFS  215

464) fliP in NC_016745


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  102 bits (368),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 91/215 (43%), Positives = 152/215 (71%), Gaps = 18/215 (8%)

Query  43   TLQVLALMTALSFLPAVVIMMTSFTRIIVVLSILRQALGLQQSPSNQVLIGISLFLSFFI  102
             LQ+++++  LS+LP +++M TSF ++ VV+SILR+ALG+QQ P+N  L G++L LS+FI
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  103  MAPVL----DRVNAEALQ--PYLAEEIGSREALARAELPIRDFMLAQTRVKDLDTFLNI-  155
            M+P L    +R ++  +   P+ + E +S+ ALA    P R+F+  ++  K+ + F N+ 
Sbjct  67   MGPTLLAVKERWHPVQVAGAPFWTSEWDSK-ALA----PYRQFLQKNSEEKEANYFRNLI  121

Query  156  -----ANVQVDSEAEVPLRVLIPAFVTSELKTAFQIGFMLFLPFLVIDLVVasilmamgm  210
                  +++    ++ +L +LIPAF  S+L  AF+IG++++LPFL IDL++++IL+AMGM
Sbjct  122  KRTWPEDIKRKIKPD-SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  211  mmlspmlislpFKLMLFVLVDGWNLIMGTLATSFG  245
            MM+SPM ISLPFKL++F+L +GW+L ++ L  SF+
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

465) Clocl_1950 in NC_016627


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  101 bits (365),  Expect = 5e-23, Method: Compositional matrix adjust.
 Identities = 85/193 (45%), Positives = 133/193 (69%), Gaps = 8/193 (4%)

Query  79   IMMTSFTRIIIVLSFFRNALGTQQMPPNQVLIGLALFLTLFIMSPVINEINENAYKPYAN  138
            +M TSF ++ +V+S++RNALG QQ+PPN  L G+AL L+LFIM+P +  ++E    P   
Sbjct  25   VMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKER-WHPVQV  83

Query  139  KEITQQVAFERSSKTI---KSFMLKHTEKKDLALFVSLSGTKTP--IKEEDIPNLPLTVI  193
                   + E+ SK++   + F+ K++E K+   F +L     P  IK    P+ +L ++
Sbjct  84   AGAPFWTS-EWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPD-SLLIL  141

Query  194  IPAFLISELTIAFKMGFLIYLPFLVIDIvvsstlmsmgmmmlspvmisLPFKVLLFIMVG  253
            IPAF +S+LT AF++G+LIYLPFL ID+++S+ L++MGMMM+SP+ ISLPFK+L+F++ G
Sbjct  142  IPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAG  201

Query  254  GWNLLTQMIVNSF  266
            GW+L    +V+SF
Sbjct  202  GWDLTLAQLVQSF  214

466) fliP in NC_009012


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  100 bits (361),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 83/199 (42%), Positives = 135/199 (68%), Gaps = 12/199 (6%)

Query  67   PSILIMMTSFVRIIIVLSFFRNAIGTQQMPPNQVLIGLALFLTLFIMRPVLTEINETAFK  126
            P I++M TSF+++ +V+S++RNA+G QQ+PPN  L G+AL L+LFIM P L  ++E    
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKE----  76

Query  127  PYTNQEITQEV--ALERSSDII---KRFMLKQTSKNDLGLFVSLSGMETP--IKEEDIPK  179
                 +++     + E+ S  +   ++F+ K++  ++   F +L     P  IK    P 
Sbjct  77   RWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPD  136

Query  180  LPLTIVIPAFIISELTIAFKIGFLIYIPFLVIDmvvsstlmsmgmmmlppvmISLPFKIL  239
             +L I+IPAF +S+LT AF+IG+LIY+PFL ID+++S+ L++MGMMM++P+ ISLPFK+L
Sbjct  137  -SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLL  195

Query  240  LFIMVGGWNLMTQMIVNSF  258
            +F++ GGW+L    +V+SF
Sbjct  196  IFLLAGGWDLTLAQLVQSF  214

467) Clo1313_1739 in NC_017304


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  100 bits (361),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 83/199 (42%), Positives = 135/199 (68%), Gaps = 12/199 (6%)

Query  67   PSILIMMTSFVRIIIVLSFFRNAIGTQQMPPNQVLIGLALFLTLFIMRPVLTEINETAFK  126
            P I++M TSF+++ +V+S++RNA+G QQ+PPN  L G+AL L+LFIM P L  ++E    
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKE----  76

Query  127  PYTNQEITQEV--ALERSSDII---KRFMLKQTSKNDLGLFVSLSGMETP--IKEEDIPK  179
                 +++     + E+ S  +   ++F+ K++  ++   F +L     P  IK    P 
Sbjct  77   RWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPD  136

Query  180  LPLTIVIPAFIISELTIAFKIGFLIYIPFLVIDmvvsstlmsmgmmmlppvmISLPFKIL  239
             +L I+IPAF +S+LT AF+IG+LIY+PFL ID+++S+ L++MGMMM++P+ ISLPFK+L
Sbjct  137  -SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLL  195

Query  240  LFIMVGGWNLMTQMIVNSF  258
            +F++ GGW+L    +V+SF
Sbjct  196  IFLLAGGWDLTLAQLVQSF  214

468) Hipma_0871 in NC_015318


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  100 bits (364),  Expect = 5e-23, Method: Compositional matrix adjust.
 Identities = 84/197 (43%), Positives = 134/197 (69%), Gaps = 11/197 (5%)

Query  59   PSILIMMTSFTRIIIVLAILRQALGTQQMPPNQILIGIALFLTLFIMSPQINTIYKTAYL  118
            P I++M TSF ++ +V++ILR+ALG QQ+PPN  L G+AL L+LFIM+P + ++ K    
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-KERWH  79

Query  119  PLQKNEIT-LEGAYKNAT-KPLKTFMLKQTRQKDLALFLRIAKKPNPKN------PQELS  170
            P+Q        +   + +  P + F+ K++ +K+   F  + K+  P +      P+ L 
Sbjct  80   PVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLL  139

Query  171  MDIVIPAFIISELKTAFEMGFIIYIPFLIIDMVVssilmsmgmmmlppimislpFKLLIF  230
              I+IPAF +S+L  AF +G++IY+PFL ID+++S+IL++MGMMM++P+ ISLPFKLLIF
Sbjct  140  --ILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIF  197

Query  231  VLADGWNLVVMSLFKSF  247
            +LA+GW+L +  L +SF
Sbjct  198  LLAGGWDLTLAQLVQSF  214

469) fliP in NC_015554


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =  100 bits (364),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 87/210 (42%), Positives = 142/210 (68%), Gaps = 17/210 (8%)

Query  49   LFIMTALSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILVGVSLFLSMFIMAPV  108
            LF+++ L+LI   I+M TSF ++ VV+SILR+A+G+QQ P+N  L G +L LS+FIM+P 
Sbjct  14   LFLLSILPLI---IVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPT  70

Query  109  FEEINER------ALQPYLSEQMTSLDAIEQAKGPMRAFMLSQTRVKDLETF---VRIAG  159
            +  ++ER      A  P+ + +  S     +A +P R F+  ++  K+ + F   ++ + 
Sbjct  71   LLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLIKRTW  125

Query  160  DEGKYADTDEVPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVasilmamgmmmlsp  219
             E+        +L ILIPAF  S+L  AF+IG+++++PFL IDL++++IL+AMGMMM+SP
Sbjct  126  PEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSP  185

Query  220  miVSLPFKLMLFVLVDGWNLIFGTLATSFG  249
            M +SLPFKL++F+L +GW+L ++ L  SF+
Sbjct  186  MTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

470) Ethha_2563 in NC_014828


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score = 99.1 bits (357),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 82/190 (44%), Positives = 126/190 (67%), Gaps = 5/190 (2%)

Query  83   MMTSFTRIIIFLSFLRNALGTQQTPPNQVLVGIALFLSLFIMSPVINQINTTAYQPLVNG  142
            M TSF ++ + +S+LRNALG QQ PPN  L G+AL LSLFIM+P +  ++       V G
Sbjct  26   MGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAG  85

Query  143  -QITTEQAEVNAMKPLRQFMFKQTENASLKTFLSMAGTPTVKSLDNI--PNS--VLIPAF  197
              + T + + +A+ P RQF+ K++E+   + F ++        +     P+S  +LIPAF
Sbjct  86   APFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIPAF  145

Query  198  VISELKRAFMMGFLIYLPFLIIDVIVgttlmsmgmmmlpptmISLPLKLALFVLVDGWGL  257
             +S+L +AF +G+LIYLPFL ID++++  L++MGMMM++P  ISLP+KL +F+L +GW+L
Sbjct  146  TVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDL  205

Query  258  TVQSLVYSFK  267
            T+  LV SF 
Sbjct  206  TLAQLVQSFS  215

471) ETEC_3055 in NC_017633


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score =   99 bits (360),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 79/191 (42%), Positives = 127/191 (67%), Gaps = 9/191 (4%)

Query  18   PFIIASGTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMPV---GKEIYYN  74
            P+II  GT F+K+++VF I+RNALG+QQVP+N++L G AL+LS+F+M P     KE    
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP  80

Query  75   SQNEnlsfnnvasvvnfvETGMSGYKSYLIKYSEPELVNFFEKIQKVNSSEDNEVIFDDD  134
             Q    +F            +++ Y+ +L K SE    N+F ++ K   +ED    +  D
Sbjct  81   VQVAGAPFWTSEWD----SKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPD  136

Query  135  NISIISLLPAYALSEIKSAFIIGFYIYLPFvvvdlvissvlltlGMMMMSPVTISTPIKL  194
              S++ L+PA+++S++  AF IG+ IYLPF+ +DL+IS++LL++GMMM+SP+TIS P+KL
Sbjct  137  --SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKL  194

Query  195  ILFVAMDGWTM  205
            ++F+  +GW +
Sbjct  195  LIFLLAGGWDL  205

472) Tthe_1440 in NC_014410


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score = 98.9 bits (356),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 81/200 (41%), Positives = 139/200 (70%), Gaps = 18/200 (9%)

Query  61   PSILIMMTSFTRIIVVLSFLRNALGLQQMPPNQVLIGLSLFLTFFIMAP--VGVQINNDS  118
            P I++M TSF ++ VV+S+LRNALG+QQ+PPN  L G++L L++FIM+P  ++V+   ++
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP  80

Query  119  IQ----PYMQGKITPQVAYVKARDPLKNFMLKQTRKNDLNLFINLAK------IKVKSVN  168
            +Q    P+  +   +     KA  P ++F+ K++  ++ N F NL K      IK + ++
Sbjct  81   VQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIK-RKIK  134

Query  169  DIPLRVVIPSFIISELKTAFEigfiiyipfliiDMVVASVLMSMGMFMLPPVLISLPFKL  228
              +L ++IP+F +S+L  AF IG++IY+PFL ID++++++L++MGM M++P+ ISLPFKL
Sbjct  135  PDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKL  194

Query  229  LLFILVDGWNILAKSLVIGF  248
            L+F+L +GW++    LV +F
Sbjct  195  LIFLLAGGWDLTLAQLVQSF  214

473) Thethe_01405 in NC_019970


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score = 98.9 bits (356),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 81/200 (41%), Positives = 139/200 (70%), Gaps = 18/200 (9%)

Query  61   PSILIMMTSFTRIIVVLSFLRNALGLQQMPPNQVLIGLSLFLTFFIMAP--VGVQINNDS  118
            P I++M TSF ++ VV+S+LRNALG+QQ+PPN  L G++L L++FIM+P  ++V+   ++
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP  80

Query  119  IQ----PYMQGKITPQVAYVKARDPLKNFMLKQTRKNDLNLFINLAK------IKVKSVN  168
            +Q    P+  +   +     KA  P ++F+ K++  ++ N F NL K      IK + ++
Sbjct  81   VQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIK-RKIK  134

Query  169  DIPLRVVIPSFIISELKTAFEigfiiyipfliiDMVVASVLMSMGMFMLPPVLISLPFKL  228
              +L ++IP+F +S+L  AF IG++IY+PFL ID++++++L++MGM M++P+ ISLPFKL
Sbjct  135  PDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKL  194

Query  229  LLFILVDGWNILAKSLVIGF  248
            L+F+L +GW++    LV +F
Sbjct  195  LIFLLAGGWDLTLAQLVQSF  214

474) Celgi_0475 in NC_015671


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score = 98.3 bits (354),  Expect = 4e-22, Method: Compositional matrix adjust.
 Identities = 86/207 (42%), Positives = 139/207 (68%), Gaps = 19/207 (9%)

Query  83   LLSVAPALLLMMTSFTKIFVVLAFTRNALGLQGVPPNQVLAGLALFLSMFVMAPVLGDVN  142
            LLS+ P +++M TSF K+ VV+++ RNALG+Q VPPN  L G+AL LS+F+M+P L  V+
Sbjct  16   LLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVK  75

Query  143  A--DAVQ----PYLDGELTFSQAVDVGSGPLRSFMLDHTREQD------LALLTRAADQP  190
               ++VQ    P+  +E         + +P R F+  ++ E++      L   T++ D  
Sbjct  76   ERWHPVQVAGAPFWTSEWD-----SKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIK  130

Query  191  NPATPEDVPLATLIPAFLLSELRSAFIMGFVIFVPFLVIDLVVSavlmamgmmmlppvmI  250
                P+  +L  LIPAF +S+L  AF +G++I++PFL IDL++S +L+AMGMMM++P+ I
Sbjct  131  RKIKPD--SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTI  188

Query  251  SLPFKVLLFVLVDGWGLVVTSLVRSYA  277
            SLPFK+L+F+L +GW+L ++ LV+S++
Sbjct  189  SLPFKLLIFLLAGGWDLTLAQLVQSFS  215

475) Rhom172_2117 in NC_015966


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score = 98.1 bits (353),  Expect = 5e-22, Method: Compositional matrix adjust.
 Identities = 78/189 (42%), Positives = 127/189 (68%), Gaps = 11/189 (5%)

Query  86   SFTRLVVIFSILRTALGLQQSPPTQVLIGLALFLTLFIMYPVFDQIHDEALRPYLDGEIT  145
            SF +L V+FSILR ALG+QQ PP   L G+AL L+LFIM P +  + +      + G   
Sbjct  29   SFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAPF  88

Query  146  QQVALE-RAAAPLRAFMLRQTREKDLMLFMDLARVEAFDRPEDV-------PFYILVPAF  197
                 + +A AP R F+ +++ EK+   F +L +     +PED+       ++ IL+PAF
Sbjct  89   WTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKR---TWPEDIKRKIKPDSLLILIPAF  145

Query  198  VISELRIAFQIGFMIFLPFLLVDLIVAsmlmsmgmmmlppvmISLPLKLLLFVLADGWYL  257
             +S+L  AF+IG++I+LPFL +DL+++++L++MGMMM++P+ ISLP+KLL+F+LA+GW L
Sbjct  146  TVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDL  205

Query  258  VVESVVRGY  266
             +  +V+++
Sbjct  206  TLAQLVQSF  214

476) Rmar_0765 in NC_013501


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score = 97.5 bits (351),  Expect = 7e-22, Method: Compositional matrix adjust.
 Identities = 78/189 (42%), Positives = 127/189 (68%), Gaps = 11/189 (5%)

Query  86   SFTRLVVIFSILRTALGLQQSPPTQVLIGLALFLTLFIMYPVFDQIHDEALRPYLDGEIT  145
            SF +L V+FSILR ALG+QQ PP   L G+AL L+LFIM P +  + +      + G   
Sbjct  29   SFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAPF  88

Query  146  QQVALE-RAAAPLRAFMLRQTREKDLMLFMDLANVEAFDRPEDV-------PFYILVPAF  197
                 + +A AP R F+ +++ EK+   F +L +     +PED+       ++ IL+PAF
Sbjct  89   WTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKR---TWPEDIKRKIKPDSLLILIPAF  145

Query  198  VISELRIAFQIGFMIFLPFLLVDLIVAsvlmsmgmmmlppvmISLPLKLLLFVLADGWYL  257
             +S+L  AF+IG++I+LPFL +DL+++++L++MGMMM++P+ ISLP+KLL+F+LA+GW L
Sbjct  146  TVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDL  205

Query  258  VVESVVRGY  266
             +  +V+++
Sbjct  206  TLAQLVQSF  214

477) Sked_31060 in NC_013521


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score = 97.5 bits (351),  Expect = 7e-22, Method: Compositional matrix adjust.
 Identities = 83/200 (42%), Positives = 135/200 (68%), Gaps = 5/200 (2%)

Query  89   LLSVAPSLLLMMTSFTKIFVVLALTRNALGLQGVPPNQVLAGLALFLSLFIMAPIIGQVN  148
            LLS+ P +++M TSF K+ VV+++ RNALG+Q VPPN  L G+AL LSLFIM+P +  V+
Sbjct  16   LLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVK  75

Query  149  ELGVQPYVNGGLDFGAAVEAGS-APLREFMLGQTREEDIA----LMTRAADQPNPTDPST  203
            E      V G+    +  ++ + AP R+F+  ++ E +      L+ R+  +        
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKP  135

Query  204  VPMLTLIPSFMLSELRAAFIIGFVIFIPFLVIDlvvsaslmsmgmmmlppvmISLPFKIL  263
             ++L LIP+F +S+L  AF IG++I++PFL IDL++S  L++MGMMM++P+ ISLPFK+L
Sbjct  136  DSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLL  195

Query  264  LFVLVDGWGMIVTALVGSYG  283
            +F+L +GW++ ++ LV S++
Sbjct  196  IFLLAGGWDLTLAQLVQSFS  215

478) Desor_4879 in NC_016584


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score = 97.0 bits (349),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 81/200 (41%), Positives = 135/200 (68%), Gaps = 17/200 (8%)

Query  67   PAILMMMTSFTRIVIVLSFVRNALGTQQLPPNQVLVGLALFLSFFVMAPT-------WNE  119
            P I++M TSF ++ +V+S++RNALG QQ+PPN  L G+AL LS+F+M+PT       W+ 
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP  80

Query  120  INTNAVQPYIKHQITQSEALDRAEEPLRMFMFKQTREKDLQLFVGLSKMEQP----KTYR  175
            ++  +  P+     ++ ++  +A  P R F+ K++ EK+ + F  L K   P    +  +
Sbjct  81   VQVAG-APF---WTSEWDS--KALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIK  134

Query  176  DVPTYVLIPAFVISELKTAFQMGFAIFVPFIVIDMIVSSTlmsigmmmlppmmislpFKL  235
              +  +LIPAF +S+L  AF++G+ I++PF+ ID+++S+ L+++GMMM++PM ISLPFKL
Sbjct  135  PDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKL  194

Query  236  LLFVLVDGWHLVVESLVTSF  255
            L+F+L +GW+L +  LV SF
Sbjct  195  LIFLLAGGWDLTLAQLVQSF  214

479) Tsac_1796 in NC_017992


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score = 97.0 bits (349),  Expect = 8e-22, Method: Compositional matrix adjust.
 Identities = 82/197 (42%), Positives = 137/197 (70%), Gaps = 12/197 (6%)

Query  61   PSILIMMTSFTRIIVVLSFLRNALGLQQMPPNQVLIGLALFLTFFIMAPVGAQINKDSIQ  120
            P I++M TSF ++ VV+S+LRNALG+QQ+PPN  L G+AL L++FIM+P    + K+  +
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-KERWH  79

Query  121  PYMQGKITP---QEAYVKARDPLKSFMLKQTRKNDLNLFISLSK------LKVKSVNDVP  171
            P +Q   +P    E   KA  P + F+ K++  ++ N F +L K      +K + ++  +
Sbjct  80   P-VQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIK-RKIKPDS  137

Query  172  LRVVIPSFIISELKTAFEigfiiyipfliiDMVVASVLMSMGMFMLPPVLISLPFKLLLF  231
            L ++IP+F +S+L  AF IG++IY+PFL ID++++++L++MGM M++P+ ISLPFKLL+F
Sbjct  138  LLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIF  197

Query  232  ILVDGWNILVKSLVIGF  248
            +L +GW++ +  LV +F
Sbjct  198  LLAGGWDLTLAQLVQSF  214

480) fliP in NC_016041


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score = 96.8 bits (348),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 86/210 (41%), Positives = 140/210 (67%), Gaps = 17/210 (8%)

Query  56   LFIMTALSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPV  115
            LF+++ L+LI   I+M TSF ++ VV+SILR+A+G+QQ P+N  L G +L LS+FIM+P 
Sbjct  14   LFLLSILPLI---IVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPT  70

Query  116  FEEINEK------ALQPYLSEEMTSIEAFNIAKEPMRAFMLSQTRVKDLETF---VQIGG  166
            +  ++E+      A  P+ + E  S      A  P R F+  ++  K+ + F   ++   
Sbjct  71   LLAVKERWHPVQVAGAPFWTSEWDSK-----ALAPYRQFLQKNSEEKEANYFRNLIKRTW  125

Query  167  YEDLYDDPADVPLTVLIPAFVTSELKTAFQIGFMLFIPFLILDLVVasilmamgmmmlsp  226
             ED+       +L +LIPAF  S+L  AF+IG+++++PFL +DL++++IL+AMGMMM+SP
Sbjct  126  PEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSP  185

Query  227  miVSLPFKLMLFVLVDGWNLIFGTLATSFG  256
            M +SLPFKL++F+L +GW+L ++ L  SF+
Sbjct  186  MTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

481) Thexy_1317 in NC_015555


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score = 96.5 bits (347),  Expect = 1e-21, Method: Compositional matrix adjust.
 Identities = 83/197 (43%), Positives = 137/197 (70%), Gaps = 12/197 (6%)

Query  61   PSILIMMTSFTRIIVVLSFLRNALGLQQMPPNQVLIGLALFLTFFIMAPVGSQINKDSIQ  120
            P I++M TSF ++ VV+S+LRNALG+QQ+PPN  L G+AL L++FIM+P    + K+  +
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-KERWH  79

Query  121  PYMQGKITP---QEAYVKARDPLKNFMLKQTRKNDLNLFINLSK------LKVKSVNDVP  171
            P +Q   +P    E   KA  P ++F+ K++  ++ N F NL K      +K + ++  +
Sbjct  80   P-VQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIK-RKIKPDS  137

Query  172  LRVVIPSFIISELKTAFEigfiiyipfliiDMVVASVLMSMGMFMLPPVLISLPFKLLLF  231
            L ++IP+F +S+L  AF IG++IY+PFL ID++++++L++MGM M++P+ ISLPFKLL+F
Sbjct  138  LLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIF  197

Query  232  ILVDGWNILAKSLVIGF  248
            +L +GW++    LV +F
Sbjct  198  LLAGGWDLTLAQLVQSF  214

482) fliP in NC_010520


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score = 96.2 bits (346),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 133/199 (67%), Gaps = 13/199 (6%)

Query  69   PSFIVMMTSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEINTKAIQ  128
            P +IVM TSF++  VVF++LRNA+G QQ PPN  + G+AL L+LFIM P    ++ +   
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKER---  77

Query  129  PYMKNKITQEQ--AVETGAKPL---RQFMLKQTRQKDLKLFVDLAKPNF----KVTKDNA  179
                 +++     + E ++K+L   RQF+ K++ +K+ + F +L K       K      
Sbjct  78   -WHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPD  136

Query  180  PLYIVVPAFIISELKTAfqigfllfipfliidlVVASVLMSMGMFMLPPVMISLPFKLLL  239
            +L I++PAF +S+L  AF+IG+L+++PFL IDL+++++L++MGM M++P+ ISLPFKLL+
Sbjct  137  SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLI  196

Query  240  FVMVDGWYLLVKSLVMSFG  258
            F++ +GW L +  LV SF+
Sbjct  197  FLLAGGWDLTLAQLVQSFS  215

483) fliP in NC_010516


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score = 95.7 bits (344),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 81/200 (41%), Positives = 130/200 (65%), Gaps = 15/200 (7%)

Query  69   PSFIVMMTSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEINTK---  125
            P +IVM TSF++  VVF++LRNA+G QQ PPN  + G+AL L+LFIM P    ++ +   
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP  80

Query  126  ---AIQPYMKNKINQEQAVEIGAKPLRQFMLKQTRQKDLKLFVDLAKPNF----KVTKDN  178
               A  P+  +  +       +  P RQF+ K++ +K+ + F +L K       K     
Sbjct  81   VQVAGAPFWTSEWDSK-----ALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKP  135

Query  179  APLYIVVPAFIISELKTAfqigfllfipfliidlVVASVLMSMGMFMLPPVMISLPFKLL  238
             +L I++PAF +S+L  AF+IG+L+++PFL IDL+++++L++MGM M++P+ ISLPFKLL
Sbjct  136  DSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLL  195

Query  239  LFVMVDGWYLLVKSLVMSFG  258
            +F++ +GW L +  LV SF+
Sbjct  196  IFLLAGGWDLTLAQLVQSFS  215

484) H04402_02743 in NC_017299


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score = 95.7 bits (344),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 133/199 (67%), Gaps = 13/199 (6%)

Query  69   PSFIVMMTSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEINTKAIQ  128
            P +IVM TSF++  VVF++LRNA+G QQ PPN  + G+AL L+LFIM P    ++ +   
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKER---  77

Query  129  PYMKNKITQEQ--AVEIGAKPL---RQFMLKQTRQKDLKLFVDLAKPNF----KVTKDNA  179
                 +++     + E ++K+L   RQF+ K++ +K+ + F +L K       K      
Sbjct  78   -WHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPD  136

Query  180  PLYIVVPAFIISELKTAfqigfllfipfliidlVVASVLMSMGMFMLPPVMISLPFKLLL  239
            +L I++PAF +S+L  AF+IG+L+++PFL IDL+++++L++MGM M++P+ ISLPFKLL+
Sbjct  137  SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLI  196

Query  240  FVMVDGWYLLVKSLVMSFG  258
            F++ +GW L +  LV SF+
Sbjct  197  FLLAGGWDLTLAQLVQSFS  215

485) fliP in NC_012563


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score = 95.4 bits (343),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 133/199 (67%), Gaps = 13/199 (6%)

Query  69   PSFIVMMTSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEINTKAIQ  128
            P +IVM TSF++  VVF++LRNA+G QQ PPN  + G+AL L+LFIM P    ++ +   
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKER---  77

Query  129  PYMKNKITQEQ--AVEIGAKPL---RQFMLKQTRQKDLKLFVELAKPNF----KVTKDNA  179
                 +++     + E ++K+L   RQF+ K++ +K+ + F +L K       K      
Sbjct  78   -WHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPD  136

Query  180  PLYIVVPAFIISELKTAfqigfllfipfliidlVVASVLMSMGMFMLPPVMISLPFKLLL  239
            +L I++PAF +S+L  AF+IG+L+++PFL IDL+++++L++MGM M++P+ ISLPFKLL+
Sbjct  137  SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLI  196

Query  240  FVMVDGWYLLVKSLVMSFG  258
            F++ +GW L +  LV SF+
Sbjct  197  FLLAGGWDLTLAQLVQSFS  215

486) fliP in NC_009697


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score = 95.4 bits (343),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 133/199 (67%), Gaps = 13/199 (6%)

Query  69   PSFIVMMTSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEINTKAIQ  128
            P +IVM TSF++  VVF++LRNA+G QQ PPN  + G+AL L+LFIM P    ++ +   
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKER---  77

Query  129  PYMKNKITQEQ--AVEIGAKPL---RQFMLKQTRQKDLKLFVELAKPNF----KVTKDNA  179
                 +++     + E ++K+L   RQF+ K++ +K+ + F +L K       K      
Sbjct  78   -WHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPD  136

Query  180  PLYIVVPAFIISELKTAfqigfllfipfliidlVVASVLMSMGMFMLPPVMISLPFKLLL  239
            +L I++PAF +S+L  AF+IG+L+++PFL IDL+++++L++MGM M++P+ ISLPFKLL+
Sbjct  137  SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLI  196

Query  240  FVMVDGWYLLVKSLVMSFG  258
            F++ +GW L +  LV SF+
Sbjct  197  FLLAGGWDLTLAQLVQSFS  215

487) fliP in NC_009495


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score = 95.4 bits (343),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 133/199 (67%), Gaps = 13/199 (6%)

Query  69   PSFIVMMTSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEINTKAIQ  128
            P +IVM TSF++  VVF++LRNA+G QQ PPN  + G+AL L+LFIM P    ++ +   
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKER---  77

Query  129  PYMKNKITQEQ--AVEIGAKPL---RQFMLKQTRQKDLKLFVELAKPNF----KVTKDNA  179
                 +++     + E ++K+L   RQF+ K++ +K+ + F +L K       K      
Sbjct  78   -WHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPD  136

Query  180  PLYIVVPAFIISELKTAfqigfllfipfliidlVVASVLMSMGMFMLPPVMISLPFKLLL  239
            +L I++PAF +S+L  AF+IG+L+++PFL IDL+++++L++MGM M++P+ ISLPFKLL+
Sbjct  137  SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLI  196

Query  240  FVMVDGWYLLVKSLVMSFG  258
            F++ +GW L +  LV SF+
Sbjct  197  FLLAGGWDLTLAQLVQSFS  215

488) fliP in NC_009698


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score = 95.4 bits (343),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 133/199 (67%), Gaps = 13/199 (6%)

Query  69   PSFIVMMTSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEINTKAIQ  128
            P +IVM TSF++  VVF++LRNA+G QQ PPN  + G+AL L+LFIM P    ++ +   
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKER---  77

Query  129  PYMKNKITQEQ--AVEIGAKPL---RQFMLKQTRQKDLKLFVELAKPNF----KVTKDNA  179
                 +++     + E ++K+L   RQF+ K++ +K+ + F +L K       K      
Sbjct  78   -WHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPD  136

Query  180  PLYIVVPAFIISELKTAfqigfllfipfliidlVVASVLMSMGMFMLPPVMISLPFKLLL  239
            +L I++PAF +S+L  AF+IG+L+++PFL IDL+++++L++MGM M++P+ ISLPFKLL+
Sbjct  137  SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLI  196

Query  240  FVMVDGWYLLVKSLVMSFG  258
            F++ +GW L +  LV SF+
Sbjct  197  FLLAGGWDLTLAQLVQSFS  215

489) fliP in NC_012658


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score = 95.4 bits (343),  Expect = 3e-21, Method: Compositional matrix adjust.
 Identities = 81/199 (41%), Positives = 133/199 (67%), Gaps = 13/199 (6%)

Query  69   PSFIVMMTSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEINTKAIQ  128
            P +IVM TSF++  VVF++LRNA+G QQ PPN  + G+AL L+LFIM P    ++ +   
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKER---  77

Query  129  PYMKNKITQEQ--AVEIGAKPL---RQFMLKQTRQKDLKLFVELAKPNF----KVTKDNA  179
                 +++     + E ++K+L   RQF+ K++ +K+ + F +L K       K      
Sbjct  78   -WHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPD  136

Query  180  PLYIVVPAFIISELKTAfqigfllfipfliidlVVASVLMSMGMFMLPPVMISLPFKLLL  239
            +L I++PAF +S+L  AF+IG+L+++PFL IDL+++++L++MGM M++P+ ISLPFKLL+
Sbjct  137  SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLI  196

Query  240  FVMVDGWYLLVKSLVMSFG  258
            F++ +GW L +  LV SF+
Sbjct  197  FLLAGGWDLTLAQLVQSFS  215

490) TOL_2496 in NC_020888


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score = 94.9 bits (341),  Expect = 4e-21, Method: Compositional matrix adjust.
 Identities = 87/214 (41%), Positives = 148/214 (70%), Gaps = 15/214 (7%)

Query  65   TIQILAIMTLLSVLPSLLIMMTSFTRIIVVMAILRQAMGLQQTPSNQVllglslfltlFI  124
             +Q+++I+ LLS+LP +++M TSF ++ VV +ILR+A+G+QQ P+N  L G++L L+LFI
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  125  MMPVFRVINV--EAVQ----PYIAEEITPQVALERAIVPVHEFMLAQTRETDLQLFMRIS  178
            M P +  ++   ++VQ    P+ + E  +     +A+ P ++F+  ++ E + + F  + 
Sbjct  67   MGPTLLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLI  121

Query  179  GR---QDIATP-EETPIHILIPAFITSELKTAFQigflifipfliidlVVASILMAMGMM  234
             R   +DI       ++ ILIPAF  S+L  AF+IG+LI++PFL IDL++++IL+AMGMM
Sbjct  122  KRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMM  181

Query  235  MLSPIIISLPFKIMLFVLIDGWALIMGTLANSFG  268
            M+SP+ ISLPFK+++F+L +GW L ++ L +SF+
Sbjct  182  MVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

491) fliP in NC_017297


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score = 94.4 bits (339),  Expect = 6e-21, Method: Compositional matrix adjust.
 Identities = 82/199 (42%), Positives = 133/199 (67%), Gaps = 13/199 (6%)

Query  69   PSFIVMMTSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMYPVYSEVNTKAIQ  128
            P +IVM TSF++  VVF++LRNA+G QQ PPN  + G+AL L+LFIM P    V+ +   
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKER---  77

Query  129  PYMKNKITQEQ--AVEIGAKPL---RQFMLKQTRQKDLKLFVDLAKPNF----KVTKDNA  179
                 +++     + E ++K+L   RQF+ K++ +K+ + F +L K       K      
Sbjct  78   -WHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPD  136

Query  180  PLYIVVPAFIISELKTAfqigfllfipfliidlVVASVLMSMGMFMLPPVMISLPFKLLL  239
            +L I++PAF +S+L  AF+IG+L+++PFL IDL+++++L++MGM M++P+ ISLPFKLL+
Sbjct  137  SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLI  196

Query  240  FVMVDGWYLLVKSLVMSFG  258
            F++ +GW L +  LV SF+
Sbjct  197  FLLAGGWDLTLAQLVQSFS  215

492) fliP in NC_009699


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score = 94.4 bits (339),  Expect = 6e-21, Method: Compositional matrix adjust.
 Identities = 82/199 (42%), Positives = 133/199 (67%), Gaps = 13/199 (6%)

Query  69   PSFIVMMTSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMYPVYSEVNTKAIQ  128
            P +IVM TSF++  VVF++LRNA+G QQ PPN  + G+AL L+LFIM P    V+ +   
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKER---  77

Query  129  PYMKNKITQEQ--AVEIGAKPL---RQFMLKQTRQKDLKLFVDLAKPNF----KVTKDNA  179
                 +++     + E ++K+L   RQF+ K++ +K+ + F +L K       K      
Sbjct  78   -WHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPD  136

Query  180  PLYIVVPAFIISELKTAfqigfllfipfliidlVVASVLMSMGMFMLPPVMISLPFKLLL  239
            +L I++PAF +S+L  AF+IG+L+++PFL IDL+++++L++MGM M++P+ ISLPFKLL+
Sbjct  137  SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLI  196

Query  240  FVMVDGWYLLVKSLVMSFG  258
            F++ +GW L +  LV SF+
Sbjct  197  FLLAGGWDLTLAQLVQSFS  215

493) hscR in NC_014366


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score = 93.9 bits (337),  Expect = 8e-21, Method: Compositional matrix adjust.
 Identities = 85/201 (43%), Positives = 142/201 (71%), Gaps = 7/201 (3%)

Query  22   PFVAVMVTAFTKlvvvlsllrnslglQQTPPNVVLNGLAIILSLYVMYPVLLQTQSLITS  81
            P++ VM T+F KL VV+S+LRN+LG+QQ PPN+ L G+A++LSL++M P LL  +     
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKE--RW  78

Query  82   HLKETPEAKL-TVDRLIEIFDVGKKPLKDFLIRHSKESERHFFLESARQLLPEEDRNNIH  140
            H  + + A + T ++    +     P ++FL ++S E E ++F +  ++  PE+ + +I 
Sbjct  79   HPVQVAGAPFWTSEWDSKALA----PYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIK  134

Query  141  EDDFLVIVPAFTVSELSAAFQigfllflpfliidllVSNLLMALGIAMLSPTQVSLPFKL  200
             D +L+++PAFTVS+L+ AF+IG+L++LPFL IDLL+SN+L+A+G+ M+SP  +SLPFKL
Sbjct  135  PDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKL  194

Query  201  LLFVFISGWTQLIHGLVLTYN  221
            L+F++ +GW   +  LV +++
Sbjct  195  LIFLLAGGWDLTLAQLVQSFS  215

494) Slip_0969 in NC_014220


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score = 93.1 bits (334),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 77/192 (41%), Positives = 129/192 (68%), Gaps = 17/192 (8%)

Query  78   SFTRIIVVLSFVRSALATQQMPPNQILVGLALFLTFFVMAPT-------WKEVNEKALQP  130
            SF ++ VV+S++R+AL+ QQ+PPN  L G+AL L++F+M+PT       W  V+  +  P
Sbjct  29   SFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAG-AP  87

Query  131  YFQGEITQDQAFTRGMAPLRTFMFKQTREKDLALFVKMAKIQRP----RTYGDVPNYVLI  186
            +  +E       ++++AP R F+ K++ EK+   F ++ K  +P    R     +  +LI
Sbjct  88   FWTSEWD-----SKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILI  142

Query  187  PAFVISELKTAFEIGFIIFVPFLVIDMVVssalmsmgmlmlppmmislpFKILLFVLVDG  246
            PAF +S+L  AF IG++I++PFL ID+++S+ L++MGM+M++PM ISLPFK+L+F+L +G
Sbjct  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202

Query  247  WNLVVNSLLMSF  258
            W+L +  L+ SF
Sbjct  203  WDLTLAQLVQSF  214

495) fliP in NC_007954


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score = 92.6 bits (332),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 87/209 (42%), Positives = 148/209 (71%), Gaps = 7/209 (3%)

Query  41   LEILALMTALSFLPAMLMMLTSFTRIVVVLAILRQALGLQQSPPNKVLIGIALVLTLFIM  100
            L++++++  LS+LP +++M TSF ++ VV++ILR+ALG+QQ PPN  L G+ALVL+LFIM
Sbjct  8    LQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIM  67

Query  101  RPVGDSIYKEAYLPYDQGKIELMAAIDIAK--VPLSQFMLAQTRETD---LEQMLKIA-N  154
             P   ++ KE   P + +   + ++   +K   P  QF+  ++ E +   + +++K +  
Sbjct  68   GPTLLAV-KERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWP  126

Query  155  EPIDLTPAEIPFLVLMPAFVLSELKTAFQIGFLLFLPFLVIDlvvasvlmsmgmmmlspl  214
            E I       ++L+L+PAF +S+L  AF+IG+L++LPFL IDL+++++L++MGMMM+SP+
Sbjct  127  EDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPM  186

Query  215  iislpFKLMIFVLVDGWAMTVSTLTASFG  243
             ISLPFKL+IF+L +GW +T++ L  SF+
Sbjct  187  TISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

496) fliP in NC_017955


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score = 92.6 bits (332),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 86/212 (41%), Positives = 131/212 (62%), Gaps = 5/212 (2%)

Query  81   PSQAVTLILAITVLSIAPSALLLVTSFTKMLVVLSLTRNALGLASSPPNQVLTGIALFLT  140
            P  ++ LI  + +LSI P  +++ TSF K+ VV+S+ RNALG+   PPN  L G+AL L+
Sbjct  4    PDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLS  63

Query  141  IFVMGPVFSDINEVAVQPYLDGTISASQAYDVGE-APLKSFLLDNTRDDELKLMIGLSGE  199
            +F+MGP +  ++E      + G+   +   D    AP + FL  N+ + E +    L   
Sbjct  64   LFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKR  123

Query  200  EKPADEASV----SMLTLIPAFVLSELKSAFIIGLVIFIPFLVLDmlvsaalmsmgmmmv  255
              P D        S+L LIPAF +S+L  AF IGL+I++PFL +D+L+S  L++MGMMMV
Sbjct  124  TWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMV  183

Query  256  ppsvvaLPFKLLLFVMVDGWALITTALVGSYS  287
            +P  ++LPFKLL+F++ +GW L  + LV S+S
Sbjct  184  SPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

497) NAL212_0476 in NC_015222


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score = 89.4 bits (320),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 79/190 (42%), Positives = 126/190 (67%), Gaps = 7/190 (3%)

Query  63   MMSSFTRIIIVLSLLRMALGTQSSPPNQVLLGLALFLTFFIMSPVIDRVYSEAYLPF--S  120
            M +SF ++ +V+S+LR ALG Q  PPN  L G+AL L++FIM+P +  V  E   P   +
Sbjct  26   MGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-KERWHPVQVA  84

Query  121  EDKISIMEAAEKASVPLKSFMLHQTRETDLALF---VQISESEELESR-DQVPLKILVPA  176
               +   E   KA  P + F+  ++ E +   F   ++ + +E++  +    +L IL+PA
Sbjct  85   GAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIPA  144

Query  177  YITSELKTAFQIGFVIFIPFLIIDlvvssvlmamgmmmlspmIISLPFKLMLFVLVDGWH  236
            +  S+L  AF+IG++I++PFL IDL++S++L+AMGMMM+SPM ISLPFKL++F+L +GW+
Sbjct  145  FTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWD  204

Query  237  LIIGSLTQSF  246
            L ++ L QSF
Sbjct  205  LTLAQLVQSF  214

498) fliP in NC_008599


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score = 89.1 bits (319),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 82/194 (43%), Positives = 133/194 (69%), Gaps = 17/194 (8%)

Query  62   TSFLRLIIVFSFLRQAMGTQQMPPTNVLISLALILTFFIMEPV---AKQSYNE---GIKP  115
            TSFL+L +VFS+LR+A+G QQ+PP   L ++AL+L++FIM P     K+  +    +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  116  YLEEKIGYQDAFALGAKPFKEFMVRNTREKDLALFYRI---RALPNP--NTVDDipftia  170
            +        D+ AL+  P+++F+ +N+ EK+ A ++R    R+ P+     +   ++ I 
Sbjct  88   FWTSE---WDSKALA--PYRQFLQKNSEEKE-ANYFRNLIKRTWPEDIKRKIKPDSLLIL  141

Query  171  apafiiSELKTAFEIGFLLYLPFLVIDmvvssvlmsmgmmmlppvmisLPFKLLIFVLVD  230
             PAF +S+L  AF IG+L+YLPFL ID+++S++L++MGMMM++P+ ISLPFKLLIF+L +
Sbjct  142  IPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAG  201

Query  231  GWNLLIGNLVASFK  244
            GW+L +++LV SF 
Sbjct  202  GWDLTLAQLVQSFS  215

499) Thimo_0280 in NC_019940


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score = 89.1 bits (319),  Expect = 2e-19, Method: Compositional matrix adjust.
 Identities = 80/194 (42%), Positives = 127/194 (66%), Gaps = 19/194 (9%)

Query  67   SFTRIIIVLAILRQALGTMQTPPNQVLIGLALFLTLFVMSPVLQRVNE--DAVQ----PY  120
            SF ++ +V++ILR+ALG  Q PPN  L G+AL L+LF+M+P L  V+E  ++VQ    P+
Sbjct  29   SFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAPF  88

Query  121  LKEELPAERAIEQASVSLRKFMLPQIREQDLALFADL------ADIGDLQSPDAVPFSLL  174
               E  +     +A  + R+F+  +  E++   F +L       DI     PD++   +L
Sbjct  89   WTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSL--LIL  141

Query  175  VPAFLTSELKTAFQIGFLVFLPFLVIDIVVAAVlmsmgmmmlspmiislpFKLMLFVLID  234
            +PAF  S+L  AF+IG+L++LPFL ID++++ +L++MGMMM+SPM ISLPFKL++F+L +
Sbjct  142  IPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAG  201

Query  235  GWTLIIGTLATSFA  248
            GW L ++ L  SF+
Sbjct  202  GWDLTLAQLVQSFS  215

500) fliP in NC_017538


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score = 82.3 bits (293),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 93/215 (44%), Positives = 144/215 (67%), Gaps = 7/215 (3%)

Query  42   GVTERAIQLIALLTVLSIAPSILVMMTSFTRIVVVLSLLRTALGTATAPPNSVMIALALF  101
            ++ + ++QLI++L +LSI P I+VM TSF ++ VV+S+LR ALG    PPN  + ++AL 
Sbjct  2    SLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALV  61

Query  102  LTGFVMGPVLQKSYDEGVKP--VIANELSVEQGFERAVGPLRGFMQKNVREKDLKLFMDL  159
            L+ F+MGP L     E   P  V +  +   +   +A++P R F+QKN  EK+ + F +L
Sbjct  62   LSLFIMGPTLLAV-KERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  160  SGEPPPATPEEM----SLRILIPAFMISELKRAFEigfllflpfliidlvvssvlmsmgm  215
                 P          SL ILIPAF +S+L +AF IG+L++LPFL IDL++S++L++MGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  216  mmlppvvvslpFKLIFFVLVDGWALVAGSLVQSYG  250
            MM++P+ +SLPFKL++F+L +GW L  + LVQS++
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

501) fliP in NC_011386


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score = 82.3 bits (293),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 93/215 (44%), Positives = 144/215 (67%), Gaps = 7/215 (3%)

Query  42   GVTERAIQLIALLTVLSIAPSILVMMTSFTRIVVVLSLLRTALGTATAPPNSVMIALALF  101
            ++ + ++QLI++L +LSI P I+VM TSF ++ VV+S+LR ALG    PPN  + ++AL 
Sbjct  2    SLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALV  61

Query  102  LTGFVMGPVLQKSYDEGVKP--VIANELSVEQGFERAVGPLRGFMQKNVREKDLKLFMDL  159
            L+ F+MGP L     E   P  V +  +   +   +A++P R F+QKN  EK+ + F +L
Sbjct  62   LSLFIMGPTLLAV-KERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  160  SGEPPPATPEEM----SLRILIPAFMISELKRAFEigfllflpfliidlvvssvlmsmgm  215
                 P          SL ILIPAF +S+L +AF IG+L++LPFL IDL++S++L++MGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  216  mmlppvvvslpFKLIFFVLVDGWALVAGSLVQSYG  250
            MM++P+ +SLPFKL++F+L +GW L  + LVQS++
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

502) fliP in NC_015684


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score = 82.3 bits (293),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 93/215 (44%), Positives = 144/215 (67%), Gaps = 7/215 (3%)

Query  42   GVTERAIQLIALLTVLSIAPSILVMMTSFTRIVVVLSLLRTALGTATAPPNSVMIALALF  101
            ++ + ++QLI++L +LSI P I+VM TSF ++ VV+S+LR ALG    PPN  + ++AL 
Sbjct  2    SLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALV  61

Query  102  LTGFVMGPVLQKSYDEGVKP--VIANELSVEQGFERAVGPLRGFMQKNVREKDLKLFMDL  159
            L+ F+MGP L     E   P  V +  +   +   +A++P R F+QKN  EK+ + F +L
Sbjct  62   LSLFIMGPTLLAV-KERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL  120

Query  160  SGEPPPATPEEM----SLRILIPAFMISELKRAFEigfllflpfliidlvvssvlmsmgm  215
                 P          SL ILIPAF +S+L +AF IG+L++LPFL IDL++S++L++MGM
Sbjct  121  IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM  180

Query  216  mmlppvvvslpFKLIFFVLVDGWALVAGSLVQSYG  250
            MM++P+ +SLPFKL++F+L +GW L  + LVQS++
Sbjct  181  MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

503) fliP in NC_000915


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score = 80.0 bits (284),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 68/165 (42%), Positives = 107/165 (65%), Gaps = 23/165 (13%)

Query  1    MILTFFIMEPSL------KKAYDTGIKPYMDKKISYTEAFEKSAL-PFKEFMLKNTREKD  53
            ++L++FIM P+L        + + +  P+       T   +  AL P+++F+ KN+ EK+
Sbjct  60   LVLSLFIMGPTLLAVKERWHPVQVAGAPF------WTSEWDSKALAPYRQFLQKNSEEKE  113

Query  54   LALFFRIRNLPNPKTPDEV-------SLSVLIPAFMISELKTAFQIGFLLYLPFLVIDMV  106
               F   RNL +   P+++       SL +LIPAF +S+L  AF+IG+L+YLPFL ID++
Sbjct  114  ANYF---RNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLL  170

Query  107  issilmamgmmmlppvmisLPFKILVFILVDGFNLLTENLVASFK  151
            IS+IL+AMGMMM++P+ ISLPFK+L+F+L +G +L   +LV SF 
Sbjct  171  ISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS  215

504) fliP in NC_008699


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score = 78.4 bits (278),  Expect = 4e-16, Method: Compositional matrix adjust.
 Identities = 81/193 (42%), Positives = 129/193 (67%), Gaps = 15/193 (7%)

Query  83   TAFTKIFVVLGLTRNALGLQQTPPNQVLAGLALFLSLFVMGPVLSDINE------VGLQP  136
            T+F K+ VV+++ RNALG+QQ PPN  L G+AL LSLF+MGP L  ++E      V+  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  137  YLNGDKTTSVAIQDGIEPLRDFMLDNTDDDELMLLTNVAGRDLPED-RADVSTAT---LI  192
            +  ++  +      ++ P R+F+  N+++ E   + N+  R  PED +  +   +   LI
Sbjct  88   FWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILI  142

Query  193  PAFVLTELKQAfiigfiifipflviDLVvsgalmalgmmmmppvmvslpFKLLLFVLVDG  252
            PAF +++L QAF IG++I++PFL IDL++S  L+A+GMMM++P+ +SLPFKLL+F+L +G
Sbjct  143  PAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGG  202

Query  253  WALVIKSLVASYT  265
            W L +  LV S++
Sbjct  203  WDLTLAQLVQSFS  215

505) fliP in NC_008825


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score = 77.3 bits (274),  Expect = 8e-16, Method: Compositional matrix adjust.
 Identities = 83/200 (42%), Positives = 137/200 (69%), Gaps = 7/200 (3%)

Query  60   LSFLPAVLLMMTGFTRIVIVLSLLRQALGTQSVPPNQVLIGLSLFLTLFVMGPTIDKVYS  119
            LS+LP +++M T+F ++ +V+S+LR+ALG Q VPPN  L G++L L+LF+MGPT+  V  
Sbjct  17   LSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAV-K  75

Query  120  EAYKPFAANQIAF--DEALARGEAPMRSFMLKQTRQSDLMLFARLAKL----DPAVKGED  173
            E   P      +F   E  +++ AP R F+ K++ + +   F  L K     D   K   
Sbjct  76   ERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKP  135

Query  174  APFRVLVPAFVTSELKSAfqigflifipfliidmivasvlmslgmmmlspvlvALPFKLM  233
             ++ +L+PAF  S+L  AF+IG+LI++PFL ID++++++L+++GMMM+SP+ ++LPFKL+
Sbjct  136  DSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLL  195

Query  234  LFVLADGWNLLLGSLAASFA  253
            +F+LA+GW+L L+ L  SF+
Sbjct  196  IFLLAGGWDLTLAQLVQSFS  215

506) MROS_2143 in NC_018178


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score = 73.9 bits (261),  Expect = 8e-15, Method: Compositional matrix adjust.
 Identities = 81/200 (41%), Positives = 138/200 (69%), Gaps = 17/200 (8%)

Query  62   PSIVIMTTAYLRIIIVFHFLKSALGTQQMPPSQLLAGIALFITFFIMAPT-------WNR  114
            P I++M T++L++ +VF +L++ALG QQ+PP+  L G+AL +++FIM+PT       W+ 
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP  80

Query  115  VNDDALSPLMDNKISVEEAYNKGIEPIREFMFKNTREEDLELFVGLSNLPRPE--TRNDV  172
            V+  +        +   E  +K++ P R+F+ KN+ E + + F  L +  +PE   R+  
Sbjct  81   VQVAG------APFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIK  134

Query  173  PT--YVLIPAFVLSELRigfiigfflfipflMVDmiissilmsmgmmmmppmmislpFKI  230
            P    +LIPAF +S+L  +F IG+++++PFL +D++IS+IL++MGMMM++PM ISLPFK+
Sbjct  135  PDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKL  194

Query  231  LLFILVDGWNLIIGSLVRSF  250
            L+F+L +GW+L ++ LV+SF
Sbjct  195  LIFLLAGGWDLTLAQLVQSF  214

507) Calni_1332 in NC_014758


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score = 71.3 bits (251),  Expect = 5e-14, Method: Compositional matrix adjust.
 Identities = 88/209 (43%), Positives = 143/209 (69%), Gaps = 7/209 (3%)

Query  41   TLQIIFLITILSIAPAILIMMTSFTRIIIVFSFLRSAMGTQQTPPNQVLIGLALFLTFFI  100
             LQ+I ++ +LSI P I++M TSF ++ +VFS+LR+A+G QQ PPN  L G+AL L++FI
Sbjct  7    PLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFI  66

Query  101  MSPVFSEMNKNALAPYLDGKIAFTDALKEAK--KPLRKFMLENTRKKDIMTFLQVSKSPM  158
            M+P +  + K+   P   +  +F  +  ++K   P R+F+  N+  K+   F ++ K   
Sbjct  67   MGPTLLAV-KERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTW  125

Query  159  PKTVDD--IPD--MVLLPAFVTSELQTAfeigfllflpfliidfvvssvllsmgmmmlpp  214
            P  +     PD  ++L+PAF  S+L  AF IG+L++LPFL ID+++S++LL+MGMMM++P
Sbjct  126  PEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSP  185

Query  215  vmismpFKILLFVLVDGWNLIVMSLVKSF  243
            + IS+PFK+L+F+L +GW+L +  LV+SF
Sbjct  186  MTISLPFKLLIFLLAGGWDLTLAQLVQSF  214

508) fliP in NC_012115


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score = 67.1 bits (235),  Expect = 9e-13, Method: Compositional matrix adjust.
 Identities = 84/194 (44%), Positives = 132/194 (69%), Gaps = 17/194 (8%)

Query  60   TSFVRLLVVFGFLRQALGTPQsppttllvslalvlTFFIMEPY---AKQAYN---TGIKP  113
            TSF++L VVF++LR+ALG  Q PP   L ++ALVL++FIM P     K+  +    +  P
Sbjct  28   TSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAP  87

Query  114  YMEEKIGYDQAFNNAVKPFKKFMIKNTREKDLALFFRI---RHLPNP--KTIDDVPLTIL  168
            +     +     ++A+ P+++F+ KN+ EK+ A +FR    R  P+   + I   +L IL
Sbjct  88   FWTSEWD-----SKALAPYRQFLQKNSEEKE-ANYFRNLIKRTWPEDIKRKIKPDSLLIL  141

Query  169  VPAFMLSELKTAFEIGfliflpfliiDmvvssilmslgmmmlppvmISLPFKILVFVLVD  228
            +PAF +S+L  AF IG+LI+LPFL ID+++S+IL+++GMMM++P+ ISLPFK+L+F+L +
Sbjct  142  IPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAG  201

Query  229  GWNLIVMGLVQSFK  242
            GW+L +  LVQSF 
Sbjct  202  GWDLTLAQLVQSFS  215

509) Thivi_0368 in NC_018012


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score = 54.2 bits (186),  Expect = 6e-09, Method: Compositional matrix adjust.
 Identities = 76/189 (41%), Positives = 125/189 (67%), Gaps = 11/189 (5%)

Query  63   SFTRIIIVLGILRQGLGTSQTPSNQIllglalfltlFVMAPVFQEIYDT-AAIPYMEEKL  121
            SF ++ +V++ILR++LG  Q P+N  L G+AL L+LF+M+P +  + +   ++      +
Sbjct  29   SFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAGAPF  88

Query  122  GTEEALGKAIKPLRTFMLAQTRETDLSLFAEIRGLDGFDSPDAI-------PLNLLVPAF  174
             T E  +KA+ P R F+  ++ E + + F   R L     P+ I       +L +L+PAF
Sbjct  89   WTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPDSLLILIPAF  145

Query  175  VISELKTAfqigflilipfliiDlvvasvlmsmgmmmlspmIISLPFKIMLFVLVDGWSL  234
             +S+L  AF+IG+LI +PFL IDL+++++L++MGMMM+SPM ISLPFK+++F+L +GW L
Sbjct  146  TVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDL  205

Query  235  VMGTLAQSF  243
             ++ L QSF
Sbjct  206  TLAQLVQSF  214

510) Alvin_2932 in NC_013851


> NC_004631_P1|42|G40|29141748|NP_805090.1|Salmonella_enterica_subsp._enterica_serovar_Typhi_Ty2|+|38544..39191|yscR|t1287|type 
III secretion system protein
Length=215

 Score = 46.9 bits (158),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 80/198 (41%), Positives = 131/198 (67%), Gaps = 13/198 (6%)

Query  59   PSALIMMTSFTRIIIVLGILRQGLGTTQTPSNQIllglalfltlFVMSPIFQEIYD--TA  116
            P  ++M TSF ++ +V++ILR++LG  Q P+N  L G+AL L+LF+M+P +  + +   +
Sbjct  21   PLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHP  80

Query  117  IQPYMEEQLGTEEALAKAVKPLRTFMLAQTRESDLALFAGIRGIDGFESPDDI-------  169
            +Q      + T E  +KA+ P R F+  ++ E +   F   R +     P+DI       
Sbjct  81   VQV-AGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYF---RNLIKRTWPEDIKRKIKPD  136

Query  170  PLTLLIPSFVISELKTAfqigflilipfliiDlvvasvlmsmgmmmlspliislpFKLML  229
            +L +LIP+F +S+L  AF+IG+LI +PFL IDL+++++L++MGMMM+SP+ ISLPFKL++
Sbjct  137  SLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLI  196

Query  230  FVLVDGWSLLLGTLARSF  247
            F+L +GW L L+ L +SF
Sbjct  197  FLLAGGWDLTLAQLVQSF  214