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Homologs of escU gene of JQ747540

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) escU
( YP_003366514.1 )

T3SS structural protein EscU

NC_013716
(Citrobacter rodentium ICC168)

1e-124

2) escU
( YP_003236100.1 )

T3SS structure protein EscU

NC_013364
(Escherichia coli 11128)

1e-117

3) escU
( YP_003501886.1 )

secretion system apparatus protein SsaU

NC_013941
(Escherichia coli CB9615)

1e-117

4) escU
( YP_002331422.1 )

secretion system apparatus protein SsaU

NC_011601
(Escherichia coli E2348/69)

1e-117

5) ECH74115_5071
( YP_002273176.1 )

secretion system apparatus protein SsaU

NC_011353
(Escherichia coli EC4115)

1e-117

6) escU
( NP_290280.1 )

secretion system apparatus protein SsaU

NC_002655
(Escherichia coli EDL933)

1e-117

7) ECO55CA74_21275
( YP_006161360.1 )

secretion system apparatus protein SsaU

NC_017656
(Escherichia coli RM12579)

1e-117

8) ECs4580
( NP_312607.1 )

secretion system apparatus protein SsaU

NC_002695
(Escherichia coli Sakai)

1e-117

9) escU
( YP_003080492.1 )

secretion system apparatus protein SsaU

NC_013008
(Escherichia coli TW14359)

1e-117

10) CDCO157_4315
( YP_006315180.1 )

secretion system apparatus protein SsaU

NC_017906
(Escherichia coli Xuzhou21)

1e-117

11) escU
( YP_003232141.1 )

secretion system apparatus protein SsaU

NC_013361
(Escherichia coli 11368)

1e-113

12) escU
( YP_003223487.1 )

T3SS structure protein EscU

NC_013353
(Escherichia coli 12009)

1e-113

13) escU
( NP_902280.1 )

secretion system apparatus protein SsaU

NC_005085
(Chromobacterium violaceum ATCC 12472)

5e-70

14) Sbal117_2093
( YP_006037324.1 )

type III secretion protein, YscU/HrpY family

NC_017579
(Shewanella baltica OS117)

2e-65

15) Sbal_1977
( YP_001050350.1 )

secretion system apparatus protein SsaU

NC_009052
(Shewanella baltica OS155)

2e-65

16) Sbal195_2281
( YP_001554709.1 )

secretion system apparatus protein SsaU

NC_009997
(Shewanella baltica OS195)

4e-65

17) Sbal678_2291
( YP_005273498.1 )

type III secretion protein, YscU/HrpY family

NC_016901
(Shewanella baltica OS678)

4e-65

18) Sbal175_2388
( YP_006020945.1 )

type III secretion protein, YscU/HrpY family

NC_017571
(Shewanella baltica BA175)

5e-65

19) SVI_2227
( YP_003556976.1 )

type III secretion system EscU protein

NC_014012
(Shewanella violacea DSS12)

4e-64

20) ssaU
( YP_002924937.1 )

secretion system apparatus protein SsaU

NC_012751
(Candidatus Hamiltonella defensa T5A)

2e-61

21) YE105_C0341
( YP_004296542.1 )

type III secretion protein, YscU/HrpY family

NC_015224
(Yersinia enterocolitica 105.5R(r))

3e-60

22) Y11_35491
( YP_006007048.1 )

type III secretion inner membrane protein

NC_017564
(Yersinia enterocolitica Y11)

3e-60

23) YPTB0330
( YP_068876.1 )

secretion system apparatus protein SsaU

NC_006155
(Yersinia pseudotuberculosis IP 32953)

1e-58

24) YPTS_0354
( YP_001870800.1 )

secretion system apparatus protein SsaU

NC_010634
(Yersinia pseudotuberculosis PB1/+)

1e-58

25) YpsIP31758_3811
( YP_001402765.1 )

secretion system apparatus protein SsaU

NC_009708
(Yersinia pseudotuberculosis IP 31758)

1e-58

26) YPK_3899
( YP_001722617.1 )

secretion system apparatus protein SsaU

NC_010465
(Yersinia pseudotuberculosis YPIII)

3e-58

27) A1122_03770
( YP_005520449.1 )

secretion system apparatus protein SsaU

NC_017168
(Yersinia pestis A1122)

5e-58

28) YpAngola_A3926
( YP_001608225.1 )

secretion system apparatus protein SsaU

NC_010159
(Yersinia pestis Angola)

5e-58

29) YPA_4009
( YP_653915.1 )

secretion system apparatus protein SsaU

NC_008150
(Yersinia pestis Antiqua)

5e-58

30) YPO0273
( YP_002345355.1 )

secretion system apparatus protein SsaU

NC_003143
(Yersinia pestis CO92)

5e-58

31) YPD8_0242
( YP_005507325.1 )

putative type III secretion apparatus protein

NC_017160
(Yersinia pestis D182038)

5e-58

32) YPN_3394
( YP_649321.1 )

secretion system apparatus protein SsaU

NC_008149
(Yersinia pestis Nepal516)

5e-58

33) YPDSF_3697
( YP_001165020.1 )

secretion system apparatus protein SsaU

NC_009381
(Yersinia pestis Pestoides F)

5e-58

34) YPZ3_0235
( YP_003566407.1 )

putative type III secretion apparatus protein

NC_014029
(Yersinia pestis Z176003)

5e-58

35) flhB1
( NP_991822.1 )

secretion system apparatus protein SsaU

NC_005810
(Yersinia pestis 91001)

6e-58

36) y0533
( NP_667870.1 )

secretion system apparatus protein SsaU

NC_004088
(Yersinia pestis KIM)

6e-58

37) SE451236_12975
( YP_008265621.1 )

secretion system apparatus protein SsaU

NC_021820
(Salmonella enterica 08-1736)

6e-52

38) ssaU
( YP_005237292.1 )

secretion system apparatus protein SsaU

NC_016856
(Salmonella enterica 14028S)

6e-52

39) ssaU
( YP_005396818.1 )

type III secretion protein

NC_017046
(Salmonella enterica 798)

6e-52

40) SEEB0189_12425
( YP_008308800.1 )

secretion system apparatus protein SsaU

NC_021844
(Salmonella enterica CFSAN000189)

6e-52

41) CFSAN001921_10035
( YP_008255381.1 )

secretion system apparatus protein SsaU

NC_021814
(Salmonella enterica CFSAN001921)

6e-52

42) ssaU
( NP_460387.1 )

secretion system apparatus protein SsaU

NC_003197
(Salmonella enterica LT2)

6e-52

43) SPAB_01903
( YP_001588126.1 )

secretion system apparatus protein SsaU

NC_010102
(Salmonella enterica SGSC4150; SPB7)

6e-52

44) ssaU
( YP_005181266.1 )

putative type III secretion protein

NC_016810
(Salmonella enterica SL1344)

6e-52

45) ssaU
( YP_005242323.1 )

secretion system apparatus protein SsaU

NC_016857
(Salmonella enterica ST4/74)

6e-52

46) STMDT12_C14380
( YP_005247134.1 )

secretion system apparatus protein SsaU

NC_016860
(Salmonella enterica T000240)

6e-52

47) STU288_03430
( YP_007901791.1 )

secretion system apparatus protein SsaU

NC_021151
(Salmonella enterica U288)

6e-52

48) ssaU
( YP_005251926.1 )

secretion system apparatus protein SsaU

NC_016863
(Salmonella enterica UK-1)

6e-52

49) SEEH1578_16345
( YP_008247328.1 )

secretion system apparatus protein SsaU

NC_021810
(Salmonella enterica 41578)

8e-52

50) SU5_02038
( YP_006087672.1 )

Type III secretion inner membrane protein

NC_017623
(Salmonella enterica B182)

8e-52

51) CFSAN002069_01890
( YP_008249238.1 )

secretion system apparatus protein SsaU

NC_021812
(Salmonella enterica CFSAN002069)

8e-52

52) SNSL254_A1532
( YP_002040673.1 )

secretion system apparatus protein SsaU

NC_011080
(Salmonella enterica SL254)

8e-52

53) SeHA_C1555
( YP_002045425.1 )

secretion system apparatus protein SsaU

NC_011083
(Salmonella enterica SL476)

8e-52

54) SN31241_24910
( YP_008360407.1 )

Secretion system apparatus protein ssaU

NC_021902
(Salmonella enterica USMARC-S3124.1)

8e-52

55) SBOV14181
( YP_008505289.1 )

putative type III secretion protein

NC_022241
(Salmonella enterica 3114)

1e-51

56) SSPA1329
( YP_002142168.1 )

secretion system apparatus protein SsaU

NC_011147
(Salmonella enterica AKU12601)

1e-51

57) ssaU
( YP_150682.1 )

type III secretion protein

NC_006511
(Salmonella enterica ATCC 9150)

1e-51

58) CFSAN001992_04480
( YP_007470654.1 )

secretion system apparatus protein SsaU

NC_020307
(Salmonella enterica CFSAN001992)

1e-51

59) ssaU
( NP_456106.1 )

putative type III secretion protein

NC_003198
(Salmonella enterica CT18)

1e-51

60) SeD_A1921
( YP_002215710.1 )

secretion system apparatus protein SsaU

NC_011205
(Salmonella enterica CT_02021853)

1e-51

61) SeSA_A1518
( YP_002114435.1 )

secretion system apparatus protein SsaU

NC_011094
(Salmonella enterica CVM19633)

1e-51

62) STBHUCCB_13790
( YP_005216937.1 )

Secretion system apparatus protein ssaU

NC_016832
(Salmonella enterica P-stx-12)

1e-51

63) SeAg_B1752
( YP_002146621.1 )

secretion system apparatus protein SsaU

NC_011149
(Salmonella enterica SL483)

1e-51

64) ssaU
( NP_805093.1 )

secretion system apparatus protein SsaU

NC_004631
(Salmonella enterica Ty2)

1e-51

65) TY21A_06555
( YP_007925615.1 )

secretion system apparatus protein SsaU

NC_021176
(Salmonella enterica Ty21a)

1e-51

66) ssaU
( YP_002226663.1 )

secretion system apparatus protein SsaU

NC_011274
(Salmonella enterica 287/91)

2e-51

67) ssaU
( YP_008480909.1 )

putative type III secretion protein

NC_022221
(Salmonella enterica CDC1983-67)

2e-51

68) ssaU
( YP_002243723.1 )

secretion system apparatus protein SsaU

NC_011294
(Salmonella enterica P125109)

2e-51

69) ssaU
( YP_005212447.1 )

putative type III secretion protein

NC_016831
(Salmonella enterica RKS5078)

2e-51

70) I137_05715
( YP_008380653.1 )

secretion system apparatus protein SsaU

NC_021984
(Salmonella enterica S06004)

2e-51

71) STMMW_14271
( YP_005232481.1 )

putative type III secretion protein

NC_016854
(Salmonella enterica D23580)

3e-51

72) CFSAN002050_13505
( YP_008260612.1 )

secretion system apparatus protein SsaU

NC_021818
(Salmonella enterica CFSAN002050)

4e-51

73) ssaU
( YP_002637865.1 )

secretion system apparatus protein SsaU

NC_012125
(Salmonella enterica RKS4594)

5e-51

74) SARI_01560
( YP_001570596.1 )

secretion system apparatus protein SsaU

NC_010067
(Salmonella enterica RSK2980)

9e-50

75) ssaU
( YP_216430.1 )

secretion system apparatus protein SsaU

NC_006905
(Salmonella enterica SC-B67)

2e-49

• Sequence Alignments

1) escU in NC_013716


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  439 bits (1653),  Expect = 1e-124, Method: Compositional matrix adjust.
 Identities = 257/345 (75%), Positives = 318/345 (93%), Gaps = 0/345 (0%)

Query  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGASFFIEVAGVVNTTI  60
            MSEKTEKPTPKKIRDLKKKGDVTKSEEV++A QSLILFSFFSLYG+SFF  ++++++ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   NSLNEPFLYSIHEILGAVLKIFLLYVLPIVLFVFVGTVATGVSQIGFIFAVEKIKPSAQK  120
            ++LN PFL++I++I+++VL I ++Y+LPIVL +F+G+ AT +SQIGFI+AV+KIKPS QK
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIISQIGFILAVDKIKPSMQK  120

Query  121  ISIKNNLKNIFSVKSIFELLKSVFKLVIISLIFYFMGNTYASEFVNFTRLNAYQTLVIIA  180
            ISIKNN+KNIFS+KS+FEL+KS+FK+ +ISLIFY++ +TY +EF NFTR+ AY +L+I A
Sbjct  121  ISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFTRMTAYGALIIAA  180

Query  181  FFIFLLWKGVLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIKGERRRL  240
            FF+FLLWKGVLFGYL+FSVFDFWFQKHE++KK KMSKDEVKREAKDTDGNPEIKGER+RL
Sbjct  181  FFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEIKGERKRL  240

Query  241  HSEIQSGSLANNIKKSTVIVKNPTHIAVCLYYKLGETPLPLVIETAKDAKALQIIKLAEL  300
            HSEIQSGSLA+NIKKSTVIVKNPTHIAVCLYY+LGET+LP+VIE +KD  AL IIKLAE 
Sbjct  241  HSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALLIIKLAER  300

Query  301  YNIPVIEDIPLARSLYKNIHKGQYITEDFFEPVAQLIRIAMDIDY  345
            Y+IPVIE++ LARS+Y ++ KGQYITED+FEPVAQ+IRIAMD+DY
Sbjct  301  YDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

2) escU in NC_013364


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  415 bits (1563),  Expect = 1e-117, Method: Compositional matrix adjust.
 Identities = 258/345 (75%), Positives = 315/345 (92%), Gaps = 0/345 (0%)

Query  1    MSEKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGMSFFVDIVGLVNTTI  60
            MSEKTEKPTPKK+RDLKKKGDVTKSEEV++A QSLILFSFFSLYG SFF  + +L++ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   DSLNRPFLYAIREILGAVLNIFLLYILPISLIVFVGTVTTGVSQIGFIFAVEKIKPSAQK  120
            D+LN+PFL+AI +I+++VL+I ++YILPI L++F+G+ +T +SQIGFI+AV+KIKPS QK
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIISQIGFILAVDKIKPSMQK  120

Query  121  ISVKNNLKNIFSVKSIFELLKSVFKLVIIVLIFYFMGHSYANEFANFTGLNAYQalvvva  180
            IS+KNN+KNIFS+KS+FEL+KS+FK+ +I LIFY++ H+Y  EFANFT + AY AL++ A
Sbjct  121  ISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFTRMTAYGALIIAA  180

Query  181  ffvfllWKGVLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIKGERRRL  240
            FFVFLLWKGVLFGYL+FSVFDFWFQKHE++KK KMSKDEVKREAKDTDGNPEIKGER+RL
Sbjct  181  FFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEIKGERKRL  240

Query  241  HSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAEL  300
            HSEIQSGSLA+NIKKSTVIVKNPTHIA+CLYY+LGET+LP+VIE GKD  AL IIKLAE 
Sbjct  241  HSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALLIIKLAER  300

Query  301  YDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVAQLIRIAIDLDY  345
            YDIPVIE++ LARS+Y ++ KGQYITED+FEPVAQ+IRIA+DLDY
Sbjct  301  YDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

3) escU in NC_011601


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  415 bits (1563),  Expect = 1e-117, Method: Compositional matrix adjust.
 Identities = 258/345 (75%), Positives = 315/345 (92%), Gaps = 0/345 (0%)

Query  1    MSEKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGMSFFVDIVGLVNTTI  60
            MSEKTEKPTPKK+RDLKKKGDVTKSEEV++A QSLILFSFFSLYG SFF  + +L++ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   DSLNRPFLYAIREILGAVLNIFLLYILPISLIVFVGTVTTGVSQIGFIFAVEKIKPSAQK  120
            D+LN+PFL+AI +I+++VL+I ++YILPI L++F+G+ +T +SQIGFI+AV+KIKPS QK
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIISQIGFILAVDKIKPSMQK  120

Query  121  ISVKNNLKNIFSVKSIFELLKSVFKLVIIVLIFYFMGHSYANEFANFTGLNAYQalvvva  180
            IS+KNN+KNIFS+KS+FEL+KS+FK+ +I LIFY++ H+Y  EFANFT + AY AL++ A
Sbjct  121  ISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFTRMTAYGALIIAA  180

Query  181  ffvfllWKGVLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIKGERRRL  240
            FFVFLLWKGVLFGYL+FSVFDFWFQKHE++KK KMSKDEVKREAKDTDGNPEIKGER+RL
Sbjct  181  FFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEIKGERKRL  240

Query  241  HSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAEL  300
            HSEIQSGSLA+NIKKSTVIVKNPTHIA+CLYY+LGET+LP+VIE GKD  AL IIKLAE 
Sbjct  241  HSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALLIIKLAER  300

Query  301  YDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVAQLIRIAIDLDY  345
            YDIPVIE++ LARS+Y ++ KGQYITED+FEPVAQ+IRIA+DLDY
Sbjct  301  YDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

4) ECH74115_5071 in NC_011353


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  415 bits (1563),  Expect = 1e-117, Method: Compositional matrix adjust.
 Identities = 257/345 (75%), Positives = 315/345 (92%), Gaps = 0/345 (0%)

Query  1    MSEKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGMSFFVDIVGLVNTTI  60
            MSEKTEKPTPKK+RDLKKKGDVTKSEEV++A QSLILFSFFSLYG SFF  + +L++ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   DSLNRPFLYAIREILGAVLNIFLLYILPISLIVFVGTVTTGVSQIGFIFAVEKIKPSAQK  120
            D+LN+PFL+AI +I+++VL+I ++YILPI L++F+G+ +T +SQIGFI+AV+KIKPS QK
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIISQIGFILAVDKIKPSMQK  120

Query  121  ISVKNNLKNIFSVKSIFELLKSVFKLVIIVLIFYFMGHSYANEFANFTGLNAYQalvvva  180
            IS+KNN+KNIFS+KS+FEL+KS+FK+ +I LIFY++ H+Y  EFANFT + AY AL++ A
Sbjct  121  ISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFTRMTAYGALIIAA  180

Query  181  ffvfllWKGVLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIKGERRRL  240
            FFVFLLWKGVLFGYL+FSVFDFWFQKHE++KK KMSKDEVKREAKDTDGNPEIKGER+RL
Sbjct  181  FFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEIKGERKRL  240

Query  241  HSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAEL  300
            HSEIQSGSLA+NIKKSTVIVKNPTHIA+CLYY+LGET+LP+VIE GKD  AL IIKLAE 
Sbjct  241  HSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALLIIKLAER  300

Query  301  YDIPVIEDIPLARTLYKNIHKGQYITEDFFEPVAQLIRIAIDLDY  345
            YDIPVIE++ LAR++Y ++ KGQYITED+FEPVAQ+IRIA+DLDY
Sbjct  301  YDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

5) escU in NC_002655


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  415 bits (1563),  Expect = 1e-117, Method: Compositional matrix adjust.
 Identities = 257/345 (75%), Positives = 315/345 (92%), Gaps = 0/345 (0%)

Query  1    MSEKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGMSFFVDIVGLVNTTI  60
            MSEKTEKPTPKK+RDLKKKGDVTKSEEV++A QSLILFSFFSLYG SFF  + +L++ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   DSLNRPFLYAIREILGAVLNIFLLYILPISLIVFVGTVTTGVSQIGFIFAVEKIKPSAQK  120
            D+LN+PFL+AI +I+++VL+I ++YILPI L++F+G+ +T +SQIGFI+AV+KIKPS QK
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIISQIGFILAVDKIKPSMQK  120

Query  121  ISVKNNLKNIFSVKSIFELLKSVFKLVIIVLIFYFMGHSYANEFANFTGLNAYQalvvva  180
            IS+KNN+KNIFS+KS+FEL+KS+FK+ +I LIFY++ H+Y  EFANFT + AY AL++ A
Sbjct  121  ISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFTRMTAYGALIIAA  180

Query  181  ffvfllWKGVLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIKGERRRL  240
            FFVFLLWKGVLFGYL+FSVFDFWFQKHE++KK KMSKDEVKREAKDTDGNPEIKGER+RL
Sbjct  181  FFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEIKGERKRL  240

Query  241  HSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAEL  300
            HSEIQSGSLA+NIKKSTVIVKNPTHIA+CLYY+LGET+LP+VIE GKD  AL IIKLAE 
Sbjct  241  HSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALLIIKLAER  300

Query  301  YDIPVIEDIPLARTLYKNIHKGQYITEDFFEPVAQLIRIAIDLDY  345
            YDIPVIE++ LAR++Y ++ KGQYITED+FEPVAQ+IRIA+DLDY
Sbjct  301  YDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

6) ECs4580 in NC_002695


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  415 bits (1563),  Expect = 1e-117, Method: Compositional matrix adjust.
 Identities = 257/345 (75%), Positives = 315/345 (92%), Gaps = 0/345 (0%)

Query  1    MSEKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGMSFFVDIVGLVNTTI  60
            MSEKTEKPTPKK+RDLKKKGDVTKSEEV++A QSLILFSFFSLYG SFF  + +L++ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   DSLNRPFLYAIREILGAVLNIFLLYILPISLIVFVGTVTTGVSQIGFIFAVEKIKPSAQK  120
            D+LN+PFL+AI +I+++VL+I ++YILPI L++F+G+ +T +SQIGFI+AV+KIKPS QK
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIISQIGFILAVDKIKPSMQK  120

Query  121  ISVKNNLKNIFSVKSIFELLKSVFKLVIIVLIFYFMGHSYANEFANFTGLNAYQalvvva  180
            IS+KNN+KNIFS+KS+FEL+KS+FK+ +I LIFY++ H+Y  EFANFT + AY AL++ A
Sbjct  121  ISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFTRMTAYGALIIAA  180

Query  181  ffvfllWKGVLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIKGERRRL  240
            FFVFLLWKGVLFGYL+FSVFDFWFQKHE++KK KMSKDEVKREAKDTDGNPEIKGER+RL
Sbjct  181  FFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEIKGERKRL  240

Query  241  HSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAEL  300
            HSEIQSGSLA+NIKKSTVIVKNPTHIA+CLYY+LGET+LP+VIE GKD  AL IIKLAE 
Sbjct  241  HSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALLIIKLAER  300

Query  301  YDIPVIEDIPLARTLYKNIHKGQYITEDFFEPVAQLIRIAIDLDY  345
            YDIPVIE++ LAR++Y ++ KGQYITED+FEPVAQ+IRIA+DLDY
Sbjct  301  YDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

7) escU in NC_013008


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  415 bits (1563),  Expect = 1e-117, Method: Compositional matrix adjust.
 Identities = 257/345 (75%), Positives = 315/345 (92%), Gaps = 0/345 (0%)

Query  1    MSEKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGMSFFVDIVGLVNTTI  60
            MSEKTEKPTPKK+RDLKKKGDVTKSEEV++A QSLILFSFFSLYG SFF  + +L++ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   DSLNRPFLYAIREILGAVLNIFLLYILPISLIVFVGTVTTGVSQIGFIFAVEKIKPSAQK  120
            D+LN+PFL+AI +I+++VL+I ++YILPI L++F+G+ +T +SQIGFI+AV+KIKPS QK
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIISQIGFILAVDKIKPSMQK  120

Query  121  ISVKNNLKNIFSVKSIFELLKSVFKLVIIVLIFYFMGHSYANEFANFTGLNAYQalvvva  180
            IS+KNN+KNIFS+KS+FEL+KS+FK+ +I LIFY++ H+Y  EFANFT + AY AL++ A
Sbjct  121  ISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFTRMTAYGALIIAA  180

Query  181  ffvfllWKGVLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIKGERRRL  240
            FFVFLLWKGVLFGYL+FSVFDFWFQKHE++KK KMSKDEVKREAKDTDGNPEIKGER+RL
Sbjct  181  FFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEIKGERKRL  240

Query  241  HSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAEL  300
            HSEIQSGSLA+NIKKSTVIVKNPTHIA+CLYY+LGET+LP+VIE GKD  AL IIKLAE 
Sbjct  241  HSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALLIIKLAER  300

Query  301  YDIPVIEDIPLARTLYKNIHKGQYITEDFFEPVAQLIRIAIDLDY  345
            YDIPVIE++ LAR++Y ++ KGQYITED+FEPVAQ+IRIA+DLDY
Sbjct  301  YDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

8) escU in NC_013941


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  415 bits (1563),  Expect = 1e-117, Method: Compositional matrix adjust.
 Identities = 257/345 (75%), Positives = 315/345 (92%), Gaps = 0/345 (0%)

Query  1    MSEKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGMSFFVDIVGLVNTTI  60
            MSEKTEKPTPKK+RDLKKKGDVTKSEEV++A QSLILFSFFSLYG SFF  + +L++ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   DSLNRPFLYAIREILGAVLNIFLLYILPISLIVFVGTVTTGVSQIGFIFAVEKIKPSAQK  120
            D+LN+PFL+AI +I+++VL+I ++YILPI L++F+G+ +T +SQIGFI+AV+KIKPS QK
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIISQIGFILAVDKIKPSMQK  120

Query  121  ISVKNNLKNIFSVKSIFELLKSVFKLVIIVLIFYFMGHSYANEFANFTGLNAYQalvvva  180
            IS+KNN+KNIFS+KS+FEL+KS+FK+ +I LIFY++ H+Y  EFANFT + AY AL++ A
Sbjct  121  ISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFTRMTAYGALIIAA  180

Query  181  ffvfllWKGVLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIKGERRRL  240
            FFVFLLWKGVLFGYL+FSVFDFWFQKHE++KK KMSKDEVKREAKDTDGNPEIKGER+RL
Sbjct  181  FFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEIKGERKRL  240

Query  241  HSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAEL  300
            HSEIQSGSLA+NIKKSTVIVKNPTHIA+CLYY+LGET+LP+VIE GKD  AL IIKLAE 
Sbjct  241  HSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALLIIKLAER  300

Query  301  YDIPVIEDIPLARTLYKNIHKGQYITEDFFEPVAQLIRIAIDLDY  345
            YDIPVIE++ LAR++Y ++ KGQYITED+FEPVAQ+IRIA+DLDY
Sbjct  301  YDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

9) ECO55CA74_21275 in NC_017656


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  415 bits (1563),  Expect = 1e-117, Method: Compositional matrix adjust.
 Identities = 257/345 (75%), Positives = 315/345 (92%), Gaps = 0/345 (0%)

Query  1    MSEKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGMSFFVDIVGLVNTTI  60
            MSEKTEKPTPKK+RDLKKKGDVTKSEEV++A QSLILFSFFSLYG SFF  + +L++ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   DSLNRPFLYAIREILGAVLNIFLLYILPISLIVFVGTVTTGVSQIGFIFAVEKIKPSAQK  120
            D+LN+PFL+AI +I+++VL+I ++YILPI L++F+G+ +T +SQIGFI+AV+KIKPS QK
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIISQIGFILAVDKIKPSMQK  120

Query  121  ISVKNNLKNIFSVKSIFELLKSVFKLVIIVLIFYFMGHSYANEFANFTGLNAYQalvvva  180
            IS+KNN+KNIFS+KS+FEL+KS+FK+ +I LIFY++ H+Y  EFANFT + AY AL++ A
Sbjct  121  ISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFTRMTAYGALIIAA  180

Query  181  ffvfllWKGVLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIKGERRRL  240
            FFVFLLWKGVLFGYL+FSVFDFWFQKHE++KK KMSKDEVKREAKDTDGNPEIKGER+RL
Sbjct  181  FFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEIKGERKRL  240

Query  241  HSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAEL  300
            HSEIQSGSLA+NIKKSTVIVKNPTHIA+CLYY+LGET+LP+VIE GKD  AL IIKLAE 
Sbjct  241  HSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALLIIKLAER  300

Query  301  YDIPVIEDIPLARTLYKNIHKGQYITEDFFEPVAQLIRIAIDLDY  345
            YDIPVIE++ LAR++Y ++ KGQYITED+FEPVAQ+IRIA+DLDY
Sbjct  301  YDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

10) CDCO157_4315 in NC_017906


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  415 bits (1563),  Expect = 1e-117, Method: Compositional matrix adjust.
 Identities = 257/345 (75%), Positives = 315/345 (92%), Gaps = 0/345 (0%)

Query  1    MSEKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGMSFFVDIVGLVNTTI  60
            MSEKTEKPTPKK+RDLKKKGDVTKSEEV++A QSLILFSFFSLYG SFF  + +L++ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   DSLNRPFLYAIREILGAVLNIFLLYILPISLIVFVGTVTTGVSQIGFIFAVEKIKPSAQK  120
            D+LN+PFL+AI +I+++VL+I ++YILPI L++F+G+ +T +SQIGFI+AV+KIKPS QK
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIISQIGFILAVDKIKPSMQK  120

Query  121  ISVKNNLKNIFSVKSIFELLKSVFKLVIIVLIFYFMGHSYANEFANFTGLNAYQalvvva  180
            IS+KNN+KNIFS+KS+FEL+KS+FK+ +I LIFY++ H+Y  EFANFT + AY AL++ A
Sbjct  121  ISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFTRMTAYGALIIAA  180

Query  181  ffvfllWKGVLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIKGERRRL  240
            FFVFLLWKGVLFGYL+FSVFDFWFQKHE++KK KMSKDEVKREAKDTDGNPEIKGER+RL
Sbjct  181  FFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEIKGERKRL  240

Query  241  HSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAEL  300
            HSEIQSGSLA+NIKKSTVIVKNPTHIA+CLYY+LGET+LP+VIE GKD  AL IIKLAE 
Sbjct  241  HSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALLIIKLAER  300

Query  301  YDIPVIEDIPLARTLYKNIHKGQYITEDFFEPVAQLIRIAIDLDY  345
            YDIPVIE++ LAR++Y ++ KGQYITED+FEPVAQ+IRIA+DLDY
Sbjct  301  YDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

11) escU in NC_013353


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  402 bits (1514),  Expect = 1e-113, Method: Compositional matrix adjust.
 Identities = 257/345 (75%), Positives = 316/345 (92%), Gaps = 0/345 (0%)

Query  1    MSEKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGASFFVEVVELVNTTI  60
            MSEKTEKPTPKK+RDLKKKGDVTKSEEV++A QSLILFSFFSLYG+SFF  +  L++ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   DSLNRPFLYAIREILGAVLNIFLLYILPISLIvfvgtvttgvsqtgFIFAVEKIKPSAQK  120
            D+LN+PFL+AI +I+++VL+I ++YILPI L++F+G+ +T +SQ GFI+AV+KIKPS QK
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIISQIGFILAVDKIKPSMQK  120

Query  121  ISVKNNLKNIFSVKSIFELLKSVFKLVIITLIFYFMGHSYANEFANFTRLNAYQTlvvva  180
            IS+KNN+KNIFS+KS+FEL+KS+FK+ +I+LIFY++ H+Y  EFANFTR+ AY +L++ A
Sbjct  121  ISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFTRMTAYGALIIAA  180

Query  181  ffvfllWKGVLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIKGERRRL  240
            FFVFLLWKGVLFGYL+FSVFDFWFQKHE++KK KMSKDEVKREAKDTDGNPEIKGER+RL
Sbjct  181  FFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEIKGERKRL  240

Query  241  HSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAEL  300
            HSEIQSGSLA+NIKKSTVIVKNPTHIA+CLYY+LGET+LP+VIE GKD  AL IIKLAE 
Sbjct  241  HSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALLIIKLAER  300

Query  301  YDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVAQLIRIAIDLDY  345
            YDIPVIE++ LARS+Y ++ KGQYITED+FEPVAQ+IRIA+DLDY
Sbjct  301  YDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

12) escU in NC_013361


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  402 bits (1512),  Expect = 1e-113, Method: Compositional matrix adjust.
 Identities = 257/345 (75%), Positives = 316/345 (92%), Gaps = 0/345 (0%)

Query  1    MSEKTEKPTPKKLRDLKKKGDVTKSEEVMAAVQSLILFSFFSLYGASFFVEVVELVNTTI  60
            MSEKTEKPTPKK+RDLKKKGDVTKSEEV++A QSLILFSFFSLYG+SFF  +  L++ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   DSLNRPFLYAIREILGAVLNIFLLYILPISLIvfvgtvttgvsqtgFIFAVEKIKPSAQK  120
            D+LN+PFL+AI +I+++VL+I ++YILPI L++F+G+ +T +SQ GFI+AV+KIKPS QK
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIISQIGFILAVDKIKPSMQK  120

Query  121  ISVKNNLKNIFSVKSIFELLKSVFKLVIITLIFYFMGHSYANEFANFTRLNAYQTlvvva  180
            IS+KNN+KNIFS+KS+FEL+KS+FK+ +I+LIFY++ H+Y  EFANFTR+ AY +L++ A
Sbjct  121  ISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFTRMTAYGALIIAA  180

Query  181  ffvfllWKGVLFGYLLFSVFDFWFQKHEGLKKMKMSKDEVKREAKDTDGNPEIKGERRRL  240
            FFVFLLWKGVLFGYL+FSVFDFWFQKHE++KK KMSKDEVKREAKDTDGNPEIKGER+RL
Sbjct  181  FFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEIKGERKRL  240

Query  241  HSEIQSGSLANNIKKSTVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAEL  300
            HSEIQSGSLA+NIKKSTVIVKNPTHIA+CLYY+LGET+LP+VIE GKD  AL IIKLAE 
Sbjct  241  HSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALLIIKLAER  300

Query  301  YDIPVIEDITLARSLYKNIHKGQYITEDFFEPVAQLIRIAIDLDY  345
            YDIPVIE++ LARS+Y ++ KGQYITED+FEPVAQ+IRIA+DLDY
Sbjct  301  YDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

13) escU in NC_005085


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  257 bits (961),  Expect = 5e-70, Method: Compositional matrix adjust.
 Identities = 150/346 (44%), Positives = 268/346 (78%), Gaps = 2/346 (0%)

Query  1    MSEKTEKPTPKKIRDARNKGQVAKSTEITSGVQLAVLLAYFCFEGPHLLQALQGMLNVAI  60
            MSEKTEKPTPKKIRD ++KG+V+KS E+ S+ Q  +L+++F + G+ ++ AL +++++++
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   SVVNQDLVFGINQLTGAFLELAMRFLGGIAALVIIMTIAAVIAQIGPLLATEALKPSLEK  120
              +N+ ++F+INQ+ ++ L+++  ++  I  ++++ + A++I+QIG +LA + +KPS++K
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIISQIGFILAVDKIKPSMQK  120

Query  121  LNPVSNLKQMFSMRSLFEFMKSIFKVTILSLIFFYLLRQYSPSI-QFLPLSDVATGMRVS  179
            ++  +N+K++FS++S+FE+ KSIFKV+++SLIF+ +++ Y   + +F  ++  + ++ ++
Sbjct  121  ISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFTRMTAYG-ALIIA  179

Query  180  TQLLFWMWASLIGFYIIFGIADFAFQRYNTTKQLMMSLEDIKQEFKNSEGNPEIKQKRKE  239
            + ++F +W +++  Y+IF++ DF FQ+ ++ K+  MS +++K+E K+++GNPEIK  RK 
Sbjct  180  AFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEIKGERKR  239

Query  240  AHREIQSGSLADNVSKSTAVVRNPTHIAVCLRYQPGETPLPQVTAVGRDAMALHIVKLAE  299
             H EIQSGSLA N+ KST +V+NPTHIAVCL Y+ GET+LP V   G+D  AL I+KLAE
Sbjct  240  LHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALLIIKLAE  299

Query  300  KAGIPVVENIEVARALAAKTKIGGYISAELFEPVAQILRLAMNINY  345
            + +IPV+EN+++AR++ +K K G YI+ +LFEPVAQ++R+AM+++Y
Sbjct  300  RYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

14) Sbal117_2093 in NC_017579


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  242 bits (902),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 148/350 (43%), Positives = 253/350 (73%), Gaps = 10/350 (2%)

Query  1    MAEKTEKPTEKRLREARNRGQVIKSAEIVTGLQMAIILGYF-LYEGPALVQAMMALIDLT  59
            M+EKTEKPT K++R+ +++G+V KS E++++ Q  I++++F LY G+++  A+ +LI +T
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLY-GSSFFSALSSLISMT  59

Query  60   INAINLPLETAAEQIVGTFAMLALRFLGGLTLVLVFTIVVGNSV--QTGPVWATESIMPS  117
            ++++N P+  A +QI++  ++L + F+  L +VLV  +  + ++  Q G + A + I PS
Sbjct  60   FDTLNKPFLFAINQIIA--GVLDISFFYILPIVLVMFLGSAATIISQIGFILAVDKIKPS  117

Query  118  MNKLNVMNNAKQLISLKSLFELAKNLVKVTVLSLVFYYLLHRYVNAF-QYLPLCEEACGI  176
            M+K+++ NN K+++S+KS+FEL K++ KV+++SL+FY ++H Y+  F ++  +   A G 
Sbjct  118  MQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFTRMT--AYGA  175

Query  177  SVISTMITWL-WGSFLGCYLIFGIADYAFQRYSLMKELKMSKDDTKQEYKDSEGNPEMKQ  235
             +I++ +  L W + L  YLIF++ D+ FQ+   MK  KMSKD+ K+E KD++GNPE+K 
Sbjct  176  LIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEIKG  235

Query  236  KRRETQREVASGSLANNVRKATVVVRNPTHIAVCLYYCEGETPLPKVLEKAEDHMALHIV  295
             R+  + E+ SGSLA+N++K+TV+V+NPTHIAVCLYY  GET+LP V+E++ D  AL I+
Sbjct  236  ERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALLII  295

Query  296  ALAEKAGVPIVENIPLARALFKHVETGDVIPESLFEPVAELLRLVMAISY  345
             LAE+ ++P++EN+ LAR+++  V  G+ I E LFEPVA+++R+ M + Y
Sbjct  296  KLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

15) Sbal_1977 in NC_009052


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  242 bits (902),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 148/350 (43%), Positives = 253/350 (73%), Gaps = 10/350 (2%)

Query  1    MAEKTEKPTEKRLREARNRGQVIKSAEIVTGLQMAIILGYF-LYEGPALVQAMMALIDLT  59
            M+EKTEKPT K++R+ +++G+V KS E++++ Q  I++++F LY G+++  A+ +LI +T
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLY-GSSFFSALSSLISMT  59

Query  60   INAINLPLETAAEQIVGTFAMLALRFLGGLTLVLVFTIVVGNSV--QTGPVWATESIMPS  117
            ++++N P+  A +QI++  ++L + F+  L +VLV  +  + ++  Q G + A + I PS
Sbjct  60   FDTLNKPFLFAINQIIA--GVLDISFFYILPIVLVMFLGSAATIISQIGFILAVDKIKPS  117

Query  118  MNKLNVMNNAKQLISLKSLFELAKNLVKVTVLSLVFYYLLHRYVNAF-QYLPLCEEACGI  176
            M+K+++ NN K+++S+KS+FEL K++ KV+++SL+FY ++H Y+  F ++  +   A G 
Sbjct  118  MQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFTRMT--AYGA  175

Query  177  SVISTMITWL-WGSFLGCYLIFGIADYAFQRYSLMKELKMSKDDTKQEYKDSEGNPEMKQ  235
             +I++ +  L W + L  YLIF++ D+ FQ+   MK  KMSKD+ K+E KD++GNPE+K 
Sbjct  176  LIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEIKG  235

Query  236  KRRETQREVASGSLANNVRKATVVVRNPTHIAVCLYYCEGETPLPKVLEKAEDHMALHIV  295
             R+  + E+ SGSLA+N++K+TV+V+NPTHIAVCLYY  GET+LP V+E++ D  AL I+
Sbjct  236  ERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALLII  295

Query  296  ALAEKAGVPIVENIPLARALFKHVETGDVIPESLFEPVAELLRLVMAISY  345
             LAE+ ++P++EN+ LAR+++  V  G+ I E LFEPVA+++R+ M + Y
Sbjct  296  KLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

16) Sbal195_2281 in NC_009997


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  241 bits (899),  Expect = 4e-65, Method: Compositional matrix adjust.
 Identities = 150/350 (43%), Positives = 252/350 (72%), Gaps = 10/350 (2%)

Query  1    MAEKTEKPTEKRLREARNRGQVIKSAEIVTGLQMAIILGYF-LYEGPALVQAIMALIDLT  59
            M+EKTEKPT K++R+ +++G+V KS E++++ Q  I++++F LY G+++  A+ +LI +T
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLY-GSSFFSALSSLISMT  59

Query  60   IHAINLPLETAAEQIVGTFAVLALRFLGGLTLVLV-FTIVVGNLV-QTGPVWAAESIMPS  117
            ++++N P+  A +QI++  +VL + F+  L +VLV F    + ++ Q G + A + I PS
Sbjct  60   FDTLNKPFLFAINQIIA--GVLDISFFYILPIVLVMFLGSAATIISQIGFILAVDKIKPS  117

Query  118  MDKLNVMNNAKQLISLKSLFELAKNLVKVTVLSLVFYYLLHRYVNAF-QYLPLCGEACGI  176
            M+K+++ NN K+++S+KS+FEL K++ KV+++SL+FY ++H Y+  F ++  +   A G 
Sbjct  118  MQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFTRMT--AYGA  175

Query  177  SVISTMITWL-WGSFLGCYLIFGIADYAFQRYSLMKELKMSKDDTKQEYKDSEGNPEMKQ  235
             +I++ +  L W + L  YLIF++ D+ FQ+   MK  KMSKD+ K+E KD++GNPE+K 
Sbjct  176  LIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEIKG  235

Query  236  KRRETQREVASGSLASNVRKATVVVRNPTHIAVCLYYSEGETPLPKVLEKAEDHMALHIV  295
             R+  + E+ SGSLA N++K+TV+V+NPTHIAVCLYY  GET+LP V+E++ D  AL I+
Sbjct  236  ERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALLII  295

Query  296  ALAEKAGVPIVENIPLARALFKHVEAGDVIPESLFEPVAELLRLVMTISY  345
             LAE+ ++P++EN+ LAR+++  V  G+ I E LFEPVA+++R+ M + Y
Sbjct  296  KLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

17) Sbal678_2291 in NC_016901


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  241 bits (899),  Expect = 4e-65, Method: Compositional matrix adjust.
 Identities = 150/350 (43%), Positives = 252/350 (72%), Gaps = 10/350 (2%)

Query  1    MAEKTEKPTEKRLREARNRGQVIKSAEIVTGLQMAIILGYF-LYEGPALVQAIMALIDLT  59
            M+EKTEKPT K++R+ +++G+V KS E++++ Q  I++++F LY G+++  A+ +LI +T
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLY-GSSFFSALSSLISMT  59

Query  60   IHAINLPLETAAEQIVGTFAVLALRFLGGLTLVLV-FTIVVGNLV-QTGPVWAAESIMPS  117
            ++++N P+  A +QI++  +VL + F+  L +VLV F    + ++ Q G + A + I PS
Sbjct  60   FDTLNKPFLFAINQIIA--GVLDISFFYILPIVLVMFLGSAATIISQIGFILAVDKIKPS  117

Query  118  MDKLNVMNNAKQLISLKSLFELAKNLVKVTVLSLVFYYLLHRYVNAF-QYLPLCGEACGI  176
            M+K+++ NN K+++S+KS+FEL K++ KV+++SL+FY ++H Y+  F ++  +   A G 
Sbjct  118  MQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFTRMT--AYGA  175

Query  177  SVISTMITWL-WGSFLGCYLIFGIADYAFQRYSLMKELKMSKDDTKQEYKDSEGNPEMKQ  235
             +I++ +  L W + L  YLIF++ D+ FQ+   MK  KMSKD+ K+E KD++GNPE+K 
Sbjct  176  LIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEIKG  235

Query  236  KRRETQREVASGSLASNVRKATVVVRNPTHIAVCLYYSEGETPLPKVLEKAEDHMALHIV  295
             R+  + E+ SGSLA N++K+TV+V+NPTHIAVCLYY  GET+LP V+E++ D  AL I+
Sbjct  236  ERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALLII  295

Query  296  ALAEKAGVPIVENIPLARALFKHVEAGDVIPESLFEPVAELLRLVMTISY  345
             LAE+ ++P++EN+ LAR+++  V  G+ I E LFEPVA+++R+ M + Y
Sbjct  296  KLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

18) Sbal175_2388 in NC_017571


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  240 bits (897),  Expect = 5e-65, Method: Compositional matrix adjust.
 Identities = 149/350 (43%), Positives = 253/350 (73%), Gaps = 10/350 (2%)

Query  1    MAEKTEKPTEKRLREARNRGQVIKSAEIVTGLQMAIILGYF-LYEGPALVQAIMALIDLT  59
            M+EKTEKPT K++R+ +++G+V KS E++++ Q  I++++F LY G+++  A+ +LI +T
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLY-GSSFFSALSSLISMT  59

Query  60   INAINLPLETAAEQIVGTFAMLALRFLGGLTLVLV-FTIVVGNLV-QTGPVWATESIMPS  117
            ++++N P+  A +QI++  ++L + F+  L +VLV F    + ++ Q G + A + I PS
Sbjct  60   FDTLNKPFLFAINQIIA--GVLDISFFYILPIVLVMFLGSAATIISQIGFILAVDKIKPS  117

Query  118  MNKLNVMNNAKQLISLKSLFELAKNLVKVTVLSLVFYYLLHRYVNAF-QYLPLCGEACGI  176
            M+K+++ NN K+++S+KS+FEL K++ KV+++SL+FY ++H Y+  F ++  +   A G 
Sbjct  118  MQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFTRMT--AYGA  175

Query  177  SVISTMITWL-WGSFLGCYLIFGIADYAFQRYSLMKELKMSKDDTKQEYKDSEGNPEMKQ  235
             +I++ +  L W + L  YLIF++ D+ FQ+   MK  KMSKD+ K+E KD++GNPE+K 
Sbjct  176  LIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEIKG  235

Query  236  KRRETQREVASGSLANNVRKATVVVRNPTHIAVCLYYCEGETPLPKVLEKAEDHMALHIV  295
             R+  + E+ SGSLA+N++K+TV+V+NPTHIAVCLYY  GET+LP V+E++ D  AL I+
Sbjct  236  ERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALLII  295

Query  296  ALAEKAGVPIVENIPLARALFKHVETGDVIPESLFEPVAELLRLVMAISY  345
             LAE+ ++P++EN+ LAR+++  V  G+ I E LFEPVA+++R+ M + Y
Sbjct  296  KLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

19) SVI_2227 in NC_014012


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  238 bits (886),  Expect = 4e-64, Method: Compositional matrix adjust.
 Identities = 144/347 (42%), Positives = 252/347 (73%), Gaps = 4/347 (1%)

Query  1    MAEKTEKPTEKQLKEARNRGQVIKSPEIVTGLQMAIILGYFLFEGQNLMQSIMYLINSTI  60
            M+EKTEKPT K++++ +++G+V KS E++++ Q  I++++F + G ++  ++  LI+ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   DAINLPLETAANQILDRFAMVALRFLGGLALVLICTIIVGNIAQTGPVWAAESLKPSMNK  120
            D++N P+  A NQI+     +++ ++  + LV++       I+Q G + A + +KPSM+K
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIISQIGFILAVDKIKPSMQK  120

Query  121  LNVVNNAKQMISWKSVFELVKNLVKVTVLCLVFYYLLHRYVNSF-QYLPLCGEECGIEVI  179
            +++ NN K+++S KSVFEL K++ KV+++ L+FY ++H Y+  F ++  + +   G  +I
Sbjct  121  ISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFTRMTA--YGALII  178

Query  180  STLITWL-WGCFLGCYVFFGVADYAFQRFNLMKELKMSKDDIKQEYKDSEGNPEVKQKRR  238
            ++++  L W   L  Y++F+V D+ FQ+ + MK  KMSKD++K+E KD++GNPE+K  R+
Sbjct  179  AAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEIKGERK  238

Query  239  EIQREVASGSLATNVKKSSVVVRNPTHLAICLYYQAGETPLPMVLEKAEDHMALHIVGMA  298
             ++ E+ SGSLA N+KKS+V+V+NPTH+A+CLYY+ GET+LPMV+E++ D  AL I+ +A
Sbjct  239  RLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALLIIKLA  298

Query  299  EKAGIPVVENIPLARAIYSQIETGSPISEDLFEPVADLLRVVMAIPY  345
            E+ +IPV+EN+ LAR+IY+++  G  I+EDLFEPVA+++R+ M + Y
Sbjct  299  ERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

20) ssaU in NC_012751


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  228 bits (851),  Expect = 2e-61, Method: Compositional matrix adjust.
 Identities = 144/348 (42%), Positives = 254/348 (73%), Gaps = 6/348 (1%)

Query  1    MPEKNEKPTEKRIKESREKGEVIKSVEITSGTQLAIILIYFSLVGPNLVNLMGLLITSSI  60
            M+EK EKPT K+I++ + KG+V KS E+ S++Q  I++ +FSL G+++ + ++ LI+ ++
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   KKLDKPIGIAVLDLTSEIASV-FLQIMGVLGGGLALATILVVMSQVGPLLAIKAIGFKGQ  119
              L+KP+ +A+ ++ + +  + F+ I+ ++   + L++   ++SQ+G +LA+  I    Q
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLV-MFLGSAATIISQIGFILAVDKIKPSMQ  119

Query  120  HINPISNFKNLVSLRSLFEICKSLFKVILVSLIFAYLLREYAPTFGYLSYCGTHCAFPI-  178
             I+  +N+KN+ S++S+FE+ KS+FKV L+SLIF  +++ Y   F+ ++   +  A+ I 
Sbjct  120  KISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFTRMTAYGALIIA  179

Query  179  -FGTLMQWLLGSLLACYVIFGILDYSFQHYNTMKKMKMSREEIKREYKDTDGDPEIKSKR  237
             F  ++ W   ++L  Y+IF+++D+ FQ  ++MKK KMS++E+KRE KDTDG+PEIK+ R
Sbjct  180  AFFVFLLW--KGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEIKGER  237

Query  238  RELQQEIQSGSLSNKVKGSTAVIKNPTHFAVCLFYHPEEAPLPIVLEKGKGTRAQTIIKL  297
            + L+ EIQSGSL++++K ST ++KNPTH+AVCL+Y+  E++LP+V+E+GK+  A  IIKL
Sbjct  238  KRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALLIIKL  297

Query  298  AEKFDVPVVENVRLAQMLHNEVNCDEIIPEHLFEPVAAILRFVLNLEY  345
            AE++D+PV+ENV+LA+ +   V+ ++ I E+LFEPVA ++R+ ++L+Y
Sbjct  298  AERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

21) YE105_C0341 in NC_015224


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  225 bits (837),  Expect = 3e-60, Method: Compositional matrix adjust.
 Identities = 144/348 (42%), Positives = 251/348 (73%), Gaps = 8/348 (2%)

Query  6    SEKNEKPTAKRLREAREKGQVIKSVEITSGMQLVVLVAYFFLVGNTIIDQIGALIRSTIN  65
            SEK EKPT+K++R+ + KG+V KS E+ S+ Q ++L ++F L G++++  +++LI  T++
Sbjct  2    SEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTFD  61

Query  66   QLQQPFTFALARIGSECTAVLIHIVGILGGALILMTIIAGIAQVGPLFATKAVAFKSEHI  125
             L++PF FA+ +I +    + +  +  +   ++L +  + I+Q+G ++A   +    + I
Sbjct  62   TLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIISQIGFILAVDKIKPSMQKI  121

Query  126  NPIDNAKQLFSLRSLFELIKSLLKVGVLTLIFGYLLAQYATSFGYL----AYCGSSCAIP  181
            +  +N K++FS++S+FEL+KS++KV++++LIF  ++  Y   F+ +    AY  ++  I+
Sbjct  122  SIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFTRMTAY--GALIIA  179

Query  182  VFGTLMSWLLGALIACYVVFSLLDYTFQHYNTMKQLKMSHEEVKREYKDSDGDPHIKQKR  241
             F  ++ W  G L++ Y++FS++D+ FQ  ++MK+ KMS +EVKRE KD+DG+P+IK  R
Sbjct  180  AFFVFLLWK-GVLFG-YLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEIKGER  237

Query  242  RQLQQEVQSGSFAKNVQRSTAIVRNPTHFAVCLFYHPDDAPLPMVIEKGKGERAALIIKL  301
            ++L+ E+QSGS+AKN+++ST IV+NPTH+AVCL+Y+ ++++LPMVIE+GK+  A LIIKL
Sbjct  238  KRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALLIIKL  297

Query  302  AEQQGIPIVENIALARALHRDVVCGDTIPETLFEPVAAILRLALALDY  349
            AE+ +IP++EN+ LAR++   V  G+ I E LFEPVA ++R+A+ LDY
Sbjct  298  AERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

22) Y11_35491 in NC_017564


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  225 bits (837),  Expect = 3e-60, Method: Compositional matrix adjust.
 Identities = 144/348 (42%), Positives = 251/348 (73%), Gaps = 8/348 (2%)

Query  6    SEKNEKPTAKRLREAREKGQVIKSVEITSGMQLVVLVAYFFLVGNTIIDQIGALIRSTIN  65
            SEK EKPT+K++R+ + KG+V KS E+ S+ Q ++L ++F L G++++  +++LI  T++
Sbjct  2    SEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTFD  61

Query  66   QLQQPFTFALARIGSECTAVLIHIVGILGGALILMTIIAGIAQVGPLFATKAVAFKSEHI  125
             L++PF FA+ +I +    + +  +  +   ++L +  + I+Q+G ++A   +    + I
Sbjct  62   TLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIISQIGFILAVDKIKPSMQKI  121

Query  126  NPIDNAKQLFSLRSLFELIKSLLKVGVLTLIFGYLLAQYATSFGYL----AYCGSSCAIP  181
            +  +N K++FS++S+FEL+KS++KV++++LIF  ++  Y   F+ +    AY  ++  I+
Sbjct  122  SIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFTRMTAY--GALIIA  179

Query  182  VFGTLMSWLLGALIACYVVFSLLDYTFQHYNTMKQLKMSHEEVKREYKDSDGDPHIKQKR  241
             F  ++ W  G L++ Y++FS++D+ FQ  ++MK+ KMS +EVKRE KD+DG+P+IK  R
Sbjct  180  AFFVFLLWK-GVLFG-YLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEIKGER  237

Query  242  RQLQQEVQSGSFAKNVQRSTAIVRNPTHFAVCLFYHPDDAPLPMVIEKGKGERAALIIKL  301
            ++L+ E+QSGS+AKN+++ST IV+NPTH+AVCL+Y+ ++++LPMVIE+GK+  A LIIKL
Sbjct  238  KRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALLIIKL  297

Query  302  AEQQGIPIVENIALARALHRDVVCGDTIPETLFEPVAAILRLALALDY  349
            AE+ +IP++EN+ LAR++   V  G+ I E LFEPVA ++R+A+ LDY
Sbjct  298  AERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

23) YPTB0330 in NC_006155


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  219 bits (817),  Expect = 1e-58, Method: Compositional matrix adjust.
 Identities = 144/347 (42%), Positives = 244/347 (71%), Gaps = 6/347 (1%)

Query  3    TEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSSII  62
            +EK EKPTPK++++ K KG+V KS E+ S+ Q + L  +F L G S+     +LI  ++ 
Sbjct  2    SEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTFD  61

Query  63   QLQQPLTLALARIGAECMTVLMHivvvlggalivvtiiAGIAQVGPLLATKAVSFKGERI  122
             L++P+ +A+ +I A  + +    ++ +   +++ +  + I+Q+G +LA   +    ++I
Sbjct  62   TLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIISQIGFILAVDKIKPSMQKI  121

Query  123  NPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQ-YAPSFGYLTHCGSRCAL--PV  179
            +  +N K++FS++SVFEL KS++KV++++LIF Y++M+ Y   F+ +T+  +  AL  + 
Sbjct  122  SIKNNIKNIFSIKSVFELFKSIFKVALISLIF-YIIMHTYIGEFANFTRMTAYGALIIAA  180

Query  180  FSTLMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREHKDSNGDPHIKQKRR  239
            F  ++ W  G L++ YL+FS+ D+ FQ+   MK+ KMS DEVKRE KD++G+P+IK  R+
Sbjct  181  FFVFLLWK-GVLFG-YLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEIKGERK  238

Query  240  QLQHEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLA  299
            +L+ E+QSGS+A N+++ST +V+NPTH+AVCL Y+  ET+LP+VIE+G D +A LI+ LA
Sbjct  239  RLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALLIIKLA  298

Query  300  EQSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALLRMALELDY  346
            E+ +IPV+EN+ LAR++   V  G+ I E++FEPVA ++R+A++LDY
Sbjct  299  ERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

24) YPTS_0354 in NC_010634


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  219 bits (817),  Expect = 1e-58, Method: Compositional matrix adjust.
 Identities = 144/347 (42%), Positives = 244/347 (71%), Gaps = 6/347 (1%)

Query  3    TEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSSII  62
            +EK EKPTPK++++ K KG+V KS E+ S+ Q + L  +F L G S+     +LI  ++ 
Sbjct  2    SEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTFD  61

Query  63   QLQQPLTLALARIGAECMTVLMHivvvlggalivvtiiAGIAQVGPLLATKAVSFKGERI  122
             L++P+ +A+ +I A  + +    ++ +   +++ +  + I+Q+G +LA   +    ++I
Sbjct  62   TLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIISQIGFILAVDKIKPSMQKI  121

Query  123  NPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQ-YAPSFGYLTHCGSRCAL--PV  179
            +  +N K++FS++SVFEL KS++KV++++LIF Y++M+ Y   F+ +T+  +  AL  + 
Sbjct  122  SIKNNIKNIFSIKSVFELFKSIFKVALISLIF-YIIMHTYIGEFANFTRMTAYGALIIAA  180

Query  180  FSTLMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREHKDSNGDPHIKQKRR  239
            F  ++ W  G L++ YL+FS+ D+ FQ+   MK+ KMS DEVKRE KD++G+P+IK  R+
Sbjct  181  FFVFLLWK-GVLFG-YLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEIKGERK  238

Query  240  QLQHEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLA  299
            +L+ E+QSGS+A N+++ST +V+NPTH+AVCL Y+  ET+LP+VIE+G D +A LI+ LA
Sbjct  239  RLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALLIIKLA  298

Query  300  EQSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALLRMALELDY  346
            E+ +IPV+EN+ LAR++   V  G+ I E++FEPVA ++R+A++LDY
Sbjct  299  ERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

25) YpsIP31758_3811 in NC_009708


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  219 bits (817),  Expect = 1e-58, Method: Compositional matrix adjust.
 Identities = 142/347 (41%), Positives = 243/347 (71%), Gaps = 6/347 (1%)

Query  4    TEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSSII  63
            +EK EKPTPK++++ K KG+V KS E+ S+ Q + L  +F L G S+     +LI  ++ 
Sbjct  2    SEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTFD  61

Query  64   QLQQPLTLALARIGAECMTVLMHivvvlggalivvtiiAGIAQVGPLLATKAVSFKGERI  123
             L++P+ +A+ +I A  + +    ++ +   +++ +  + I+Q+G +LA   +    ++I
Sbjct  62   TLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIISQIGFILAVDKIKPSMQKI  121

Query  124  NPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQ-YAPSFGYLTHCGSRCAL--PV  180
            +  +N K++FS++SVFEL KS++KV++++LIF Y++M+ Y   F+ +T+  +  AL  + 
Sbjct  122  SIKNNIKNIFSIKSVFELFKSIFKVALISLIF-YIIMHTYIGEFANFTRMTAYGALIIAA  180

Query  181  FSTLMGWLLGSLIACYLVFSLMDYTFQRYTIMKQLKMSHDEVKREHKDSNGDPHIKQKRR  240
            F  ++ W   +++  YL+FS+ D+ FQ+   MK+ KMS DEVKRE KD++G+P+IK  R+
Sbjct  181  FFVFLLW--KGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEIKGERK  238

Query  241  QLQHEVQSGSFATNVRRSTAVVRNPTHFAVCLVYHPEETPLPIVIEKGHDEQAALIVSLA  300
            +L+ E+QSGS+A N+++ST +V+NPTH+AVCL Y+  ET+LP+VIE+G D +A LI+ LA
Sbjct  239  RLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALLIIKLA  298

Query  301  EQSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALLRMALELDY  347
            E+ +IPV+EN+ LAR++   V  G+ I E++FEPVA ++R+A++LDY
Sbjct  299  ERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

26) YPK_3899 in NC_010465


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  218 bits (811),  Expect = 3e-58, Method: Compositional matrix adjust.
 Identities = 143/347 (42%), Positives = 244/347 (71%), Gaps = 6/347 (1%)

Query  3    TEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSSII  62
            +EK EKPTPK++++ K KG+V KS E+ S+ Q + L  +F L G S+     +LI  ++ 
Sbjct  2    SEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTFD  61

Query  63   QLQQPLTLALARIGAECMTVLMHivvvlggalivvtiiAGIAQVGPLLATKAVSFKGERI  122
             L++P+ +A+ +I A  + +    ++ +   +++ +  + I+Q+G +LA   +    ++I
Sbjct  62   TLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIISQIGFILAVDKIKPSMQKI  121

Query  123  NPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLIQ-YAPSFGYLTHCGSRCAL--PV  179
            +  +N K++FS++SVFEL KS++KV++++LIF Y++++ Y   F+ +T+  +  AL  + 
Sbjct  122  SIKNNIKNIFSIKSVFELFKSIFKVALISLIF-YIIMHTYIGEFANFTRMTAYGALIIAA  180

Query  180  FSTLMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREHKDSNGDPHIKQKRR  239
            F  ++ W  G L++ YL+FS+ D+ FQ+   MK+ KMS DEVKRE KD++G+P+IK  R+
Sbjct  181  FFVFLLWK-GVLFG-YLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEIKGERK  238

Query  240  QLQHEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLA  299
            +L+ E+QSGS+A N+++ST +V+NPTH+AVCL Y+  ET+LP+VIE+G D +A LI+ LA
Sbjct  239  RLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALLIIKLA  298

Query  300  EQSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALLRMALELDY  346
            E+ +IPV+EN+ LAR++   V  G+ I E++FEPVA ++R+A++LDY
Sbjct  299  ERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

27) A1122_03770 in NC_017168


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  217 bits (809),  Expect = 5e-58, Method: Compositional matrix adjust.
 Identities = 142/347 (41%), Positives = 243/347 (71%), Gaps = 6/347 (1%)

Query  3    TEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSSII  62
            +EK EKPTPK++++ K KG+V KS E+ S+ Q + L  +F L G S+     +LI  ++ 
Sbjct  2    SEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTFD  61

Query  63   QLQQPLTLALARIGAECMTVLMHivvvlggalivvtiiAGIAQVGPLLATKAVSFKGERI  122
             L++P+ +A+ +I A  + +    ++ +   +++ +  + I+Q+G +LA   +    ++I
Sbjct  62   TLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIISQIGFILAVDKIKPSMQKI  121

Query  123  NPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQ-YAPSFGYLTHCGSRCAL--PV  179
            +  +N K++FS++SVFEL KS++KV++++LIF Y++M+ Y   F+ +T+  +  AL  + 
Sbjct  122  SIKNNIKNIFSIKSVFELFKSIFKVALISLIF-YIIMHTYIGEFANFTRMTAYGALIIAA  180

Query  180  FSTLMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREYKDSNGDPHIKQKRR  239
            F  ++ W   +++  YL+FS+ D+ FQ+   MK+ KMS DEVKRE KD++G+P+IK  R+
Sbjct  181  FFVFLLW--KGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEIKGERK  238

Query  240  QLQHEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLA  299
            +L+ E+QSGS+A N+++ST +V+NPTH+AVCL Y+  ET+LP+VIE+G D +A LI+ LA
Sbjct  239  RLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALLIIKLA  298

Query  300  EQSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALLRMALELDY  346
            E+ +IPV+EN+ LAR++   V  G+ I E++FEPVA ++R+A++LDY
Sbjct  299  ERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

28) YpAngola_A3926 in NC_010159


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  217 bits (809),  Expect = 5e-58, Method: Compositional matrix adjust.
 Identities = 142/347 (41%), Positives = 243/347 (71%), Gaps = 6/347 (1%)

Query  3    TEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSSII  62
            +EK EKPTPK++++ K KG+V KS E+ S+ Q + L  +F L G S+     +LI  ++ 
Sbjct  2    SEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTFD  61

Query  63   QLQQPLTLALARIGAECMTVLMHivvvlggalivvtiiAGIAQVGPLLATKAVSFKGERI  122
             L++P+ +A+ +I A  + +    ++ +   +++ +  + I+Q+G +LA   +    ++I
Sbjct  62   TLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIISQIGFILAVDKIKPSMQKI  121

Query  123  NPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQ-YAPSFGYLTHCGSRCAL--PV  179
            +  +N K++FS++SVFEL KS++KV++++LIF Y++M+ Y   F+ +T+  +  AL  + 
Sbjct  122  SIKNNIKNIFSIKSVFELFKSIFKVALISLIF-YIIMHTYIGEFANFTRMTAYGALIIAA  180

Query  180  FSTLMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREYKDSNGDPHIKQKRR  239
            F  ++ W   +++  YL+FS+ D+ FQ+   MK+ KMS DEVKRE KD++G+P+IK  R+
Sbjct  181  FFVFLLW--KGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEIKGERK  238

Query  240  QLQHEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLA  299
            +L+ E+QSGS+A N+++ST +V+NPTH+AVCL Y+  ET+LP+VIE+G D +A LI+ LA
Sbjct  239  RLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALLIIKLA  298

Query  300  EQSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALLRMALELDY  346
            E+ +IPV+EN+ LAR++   V  G+ I E++FEPVA ++R+A++LDY
Sbjct  299  ERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

29) YPA_4009 in NC_008150


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  217 bits (809),  Expect = 5e-58, Method: Compositional matrix adjust.
 Identities = 142/347 (41%), Positives = 243/347 (71%), Gaps = 6/347 (1%)

Query  3    TEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSSII  62
            +EK EKPTPK++++ K KG+V KS E+ S+ Q + L  +F L G S+     +LI  ++ 
Sbjct  2    SEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTFD  61

Query  63   QLQQPLTLALARIGAECMTVLMHivvvlggalivvtiiAGIAQVGPLLATKAVSFKGERI  122
             L++P+ +A+ +I A  + +    ++ +   +++ +  + I+Q+G +LA   +    ++I
Sbjct  62   TLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIISQIGFILAVDKIKPSMQKI  121

Query  123  NPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQ-YAPSFGYLTHCGSRCAL--PV  179
            +  +N K++FS++SVFEL KS++KV++++LIF Y++M+ Y   F+ +T+  +  AL  + 
Sbjct  122  SIKNNIKNIFSIKSVFELFKSIFKVALISLIF-YIIMHTYIGEFANFTRMTAYGALIIAA  180

Query  180  FSTLMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREYKDSNGDPHIKQKRR  239
            F  ++ W   +++  YL+FS+ D+ FQ+   MK+ KMS DEVKRE KD++G+P+IK  R+
Sbjct  181  FFVFLLW--KGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEIKGERK  238

Query  240  QLQHEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLA  299
            +L+ E+QSGS+A N+++ST +V+NPTH+AVCL Y+  ET+LP+VIE+G D +A LI+ LA
Sbjct  239  RLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALLIIKLA  298

Query  300  EQSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALLRMALELDY  346
            E+ +IPV+EN+ LAR++   V  G+ I E++FEPVA ++R+A++LDY
Sbjct  299  ERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

30) YPO0273 in NC_003143


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  217 bits (809),  Expect = 5e-58, Method: Compositional matrix adjust.
 Identities = 142/347 (41%), Positives = 243/347 (71%), Gaps = 6/347 (1%)

Query  3    TEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSSII  62
            +EK EKPTPK++++ K KG+V KS E+ S+ Q + L  +F L G S+     +LI  ++ 
Sbjct  2    SEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTFD  61

Query  63   QLQQPLTLALARIGAECMTVLMHivvvlggalivvtiiAGIAQVGPLLATKAVSFKGERI  122
             L++P+ +A+ +I A  + +    ++ +   +++ +  + I+Q+G +LA   +    ++I
Sbjct  62   TLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIISQIGFILAVDKIKPSMQKI  121

Query  123  NPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQ-YAPSFGYLTHCGSRCAL--PV  179
            +  +N K++FS++SVFEL KS++KV++++LIF Y++M+ Y   F+ +T+  +  AL  + 
Sbjct  122  SIKNNIKNIFSIKSVFELFKSIFKVALISLIF-YIIMHTYIGEFANFTRMTAYGALIIAA  180

Query  180  FSTLMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREYKDSNGDPHIKQKRR  239
            F  ++ W   +++  YL+FS+ D+ FQ+   MK+ KMS DEVKRE KD++G+P+IK  R+
Sbjct  181  FFVFLLW--KGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEIKGERK  238

Query  240  QLQHEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLA  299
            +L+ E+QSGS+A N+++ST +V+NPTH+AVCL Y+  ET+LP+VIE+G D +A LI+ LA
Sbjct  239  RLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALLIIKLA  298

Query  300  EQSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALLRMALELDY  346
            E+ +IPV+EN+ LAR++   V  G+ I E++FEPVA ++R+A++LDY
Sbjct  299  ERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

31) YPD8_0242 in NC_017160


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  217 bits (809),  Expect = 5e-58, Method: Compositional matrix adjust.
 Identities = 142/347 (41%), Positives = 243/347 (71%), Gaps = 6/347 (1%)

Query  3    TEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSSII  62
            +EK EKPTPK++++ K KG+V KS E+ S+ Q + L  +F L G S+     +LI  ++ 
Sbjct  2    SEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTFD  61

Query  63   QLQQPLTLALARIGAECMTVLMHivvvlggalivvtiiAGIAQVGPLLATKAVSFKGERI  122
             L++P+ +A+ +I A  + +    ++ +   +++ +  + I+Q+G +LA   +    ++I
Sbjct  62   TLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIISQIGFILAVDKIKPSMQKI  121

Query  123  NPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQ-YAPSFGYLTHCGSRCAL--PV  179
            +  +N K++FS++SVFEL KS++KV++++LIF Y++M+ Y   F+ +T+  +  AL  + 
Sbjct  122  SIKNNIKNIFSIKSVFELFKSIFKVALISLIF-YIIMHTYIGEFANFTRMTAYGALIIAA  180

Query  180  FSTLMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREYKDSNGDPHIKQKRR  239
            F  ++ W   +++  YL+FS+ D+ FQ+   MK+ KMS DEVKRE KD++G+P+IK  R+
Sbjct  181  FFVFLLW--KGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEIKGERK  238

Query  240  QLQHEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLA  299
            +L+ E+QSGS+A N+++ST +V+NPTH+AVCL Y+  ET+LP+VIE+G D +A LI+ LA
Sbjct  239  RLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALLIIKLA  298

Query  300  EQSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALLRMALELDY  346
            E+ +IPV+EN+ LAR++   V  G+ I E++FEPVA ++R+A++LDY
Sbjct  299  ERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

32) YPN_3394 in NC_008149


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  217 bits (809),  Expect = 5e-58, Method: Compositional matrix adjust.
 Identities = 142/347 (41%), Positives = 243/347 (71%), Gaps = 6/347 (1%)

Query  3    TEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSSII  62
            +EK EKPTPK++++ K KG+V KS E+ S+ Q + L  +F L G S+     +LI  ++ 
Sbjct  2    SEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTFD  61

Query  63   QLQQPLTLALARIGAECMTVLMHivvvlggalivvtiiAGIAQVGPLLATKAVSFKGERI  122
             L++P+ +A+ +I A  + +    ++ +   +++ +  + I+Q+G +LA   +    ++I
Sbjct  62   TLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIISQIGFILAVDKIKPSMQKI  121

Query  123  NPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQ-YAPSFGYLTHCGSRCAL--PV  179
            +  +N K++FS++SVFEL KS++KV++++LIF Y++M+ Y   F+ +T+  +  AL  + 
Sbjct  122  SIKNNIKNIFSIKSVFELFKSIFKVALISLIF-YIIMHTYIGEFANFTRMTAYGALIIAA  180

Query  180  FSTLMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREYKDSNGDPHIKQKRR  239
            F  ++ W   +++  YL+FS+ D+ FQ+   MK+ KMS DEVKRE KD++G+P+IK  R+
Sbjct  181  FFVFLLW--KGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEIKGERK  238

Query  240  QLQHEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLA  299
            +L+ E+QSGS+A N+++ST +V+NPTH+AVCL Y+  ET+LP+VIE+G D +A LI+ LA
Sbjct  239  RLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALLIIKLA  298

Query  300  EQSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALLRMALELDY  346
            E+ +IPV+EN+ LAR++   V  G+ I E++FEPVA ++R+A++LDY
Sbjct  299  ERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

33) YPDSF_3697 in NC_009381


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  217 bits (809),  Expect = 5e-58, Method: Compositional matrix adjust.
 Identities = 142/347 (41%), Positives = 243/347 (71%), Gaps = 6/347 (1%)

Query  3    TEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSSII  62
            +EK EKPTPK++++ K KG+V KS E+ S+ Q + L  +F L G S+     +LI  ++ 
Sbjct  2    SEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTFD  61

Query  63   QLQQPLTLALARIGAECMTVLMHivvvlggalivvtiiAGIAQVGPLLATKAVSFKGERI  122
             L++P+ +A+ +I A  + +    ++ +   +++ +  + I+Q+G +LA   +    ++I
Sbjct  62   TLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIISQIGFILAVDKIKPSMQKI  121

Query  123  NPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQ-YAPSFGYLTHCGSRCAL--PV  179
            +  +N K++FS++SVFEL KS++KV++++LIF Y++M+ Y   F+ +T+  +  AL  + 
Sbjct  122  SIKNNIKNIFSIKSVFELFKSIFKVALISLIF-YIIMHTYIGEFANFTRMTAYGALIIAA  180

Query  180  FSTLMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREYKDSNGDPHIKQKRR  239
            F  ++ W   +++  YL+FS+ D+ FQ+   MK+ KMS DEVKRE KD++G+P+IK  R+
Sbjct  181  FFVFLLW--KGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEIKGERK  238

Query  240  QLQHEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLA  299
            +L+ E+QSGS+A N+++ST +V+NPTH+AVCL Y+  ET+LP+VIE+G D +A LI+ LA
Sbjct  239  RLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALLIIKLA  298

Query  300  EQSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALLRMALELDY  346
            E+ +IPV+EN+ LAR++   V  G+ I E++FEPVA ++R+A++LDY
Sbjct  299  ERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

34) YPZ3_0235 in NC_014029


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  217 bits (809),  Expect = 5e-58, Method: Compositional matrix adjust.
 Identities = 142/347 (41%), Positives = 243/347 (71%), Gaps = 6/347 (1%)

Query  3    TEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSSII  62
            +EK EKPTPK++++ K KG+V KS E+ S+ Q + L  +F L G S+     +LI  ++ 
Sbjct  2    SEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTFD  61

Query  63   QLQQPLTLALARIGAECMTVLMHivvvlggalivvtiiAGIAQVGPLLATKAVSFKGERI  122
             L++P+ +A+ +I A  + +    ++ +   +++ +  + I+Q+G +LA   +    ++I
Sbjct  62   TLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIISQIGFILAVDKIKPSMQKI  121

Query  123  NPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQ-YAPSFGYLTHCGSRCAL--PV  179
            +  +N K++FS++SVFEL KS++KV++++LIF Y++M+ Y   F+ +T+  +  AL  + 
Sbjct  122  SIKNNIKNIFSIKSVFELFKSIFKVALISLIF-YIIMHTYIGEFANFTRMTAYGALIIAA  180

Query  180  FSTLMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREYKDSNGDPHIKQKRR  239
            F  ++ W   +++  YL+FS+ D+ FQ+   MK+ KMS DEVKRE KD++G+P+IK  R+
Sbjct  181  FFVFLLW--KGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEIKGERK  238

Query  240  QLQHEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLA  299
            +L+ E+QSGS+A N+++ST +V+NPTH+AVCL Y+  ET+LP+VIE+G D +A LI+ LA
Sbjct  239  RLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALLIIKLA  298

Query  300  EQSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALLRMALELDY  346
            E+ +IPV+EN+ LAR++   V  G+ I E++FEPVA ++R+A++LDY
Sbjct  299  ERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

35) flhB1 in NC_005810


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  217 bits (808),  Expect = 6e-58, Method: Compositional matrix adjust.
 Identities = 142/347 (41%), Positives = 243/347 (71%), Gaps = 6/347 (1%)

Query  4    TEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSSII  63
            +EK EKPTPK++++ K KG+V KS E+ S+ Q + L  +F L G S+     +LI  ++ 
Sbjct  2    SEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTFD  61

Query  64   QLQQPLTLALARIGAECMTVLMHivvvlggalivvtiiAGIAQVGPLLATKAVSFKGERI  123
             L++P+ +A+ +I A  + +    ++ +   +++ +  + I+Q+G +LA   +    ++I
Sbjct  62   TLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIISQIGFILAVDKIKPSMQKI  121

Query  124  NPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQ-YAPSFGYLTHCGSRCAL--PV  180
            +  +N K++FS++SVFEL KS++KV++++LIF Y++M+ Y   F+ +T+  +  AL  + 
Sbjct  122  SIKNNIKNIFSIKSVFELFKSIFKVALISLIF-YIIMHTYIGEFANFTRMTAYGALIIAA  180

Query  181  FSTLMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREYKDSNGDPHIKQKRR  240
            F  ++ W   +++  YL+FS+ D+ FQ+   MK+ KMS DEVKRE KD++G+P+IK  R+
Sbjct  181  FFVFLLW--KGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEIKGERK  238

Query  241  QLQHEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLA  300
            +L+ E+QSGS+A N+++ST +V+NPTH+AVCL Y+  ET+LP+VIE+G D +A LI+ LA
Sbjct  239  RLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALLIIKLA  298

Query  301  EQSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALLRMALELDY  347
            E+ +IPV+EN+ LAR++   V  G+ I E++FEPVA ++R+A++LDY
Sbjct  299  ERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

36) y0533 in NC_004088


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  217 bits (808),  Expect = 6e-58, Method: Compositional matrix adjust.
 Identities = 142/347 (41%), Positives = 243/347 (71%), Gaps = 6/347 (1%)

Query  4    TEKNEKPTPKRLKEAKEKGQVVKSVEITSGVQLVALVIYFLLTGYSLVEQAKALIRSSII  63
            +EK EKPTPK++++ K KG+V KS E+ S+ Q + L  +F L G S+     +LI  ++ 
Sbjct  2    SEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTFD  61

Query  64   QLQQPLTLALARIGAECMTVLMHivvvlggalivvtiiAGIAQVGPLLATKAVSFKGERI  123
             L++P+ +A+ +I A  + +    ++ +   +++ +  + I+Q+G +LA   +    ++I
Sbjct  62   TLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIISQIGFILAVDKIKPSMQKI  121

Query  124  NPIQNAKQLFSLRSVFELMKSLLKVGVLTLIFGYLLMQ-YAPSFGYLTHCGSRCAL--PV  180
            +  +N K++FS++SVFEL KS++KV++++LIF Y++M+ Y   F+ +T+  +  AL  + 
Sbjct  122  SIKNNIKNIFSIKSVFELFKSIFKVALISLIF-YIIMHTYIGEFANFTRMTAYGALIIAA  180

Query  181  FSTLMGWLLGSLIACYLVFSLMDYAFQRYTIMKQLKMSHDEVKREYKDSNGDPHIKQKRR  240
            F  ++ W   +++  YL+FS+ D+ FQ+   MK+ KMS DEVKRE KD++G+P+IK  R+
Sbjct  181  FFVFLLW--KGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEIKGERK  238

Query  241  QLQHEVQSGSFATNVRRSTAVVRNPTHFAVCLIYHPEETPLPIVIEKGHDEQAALIVSLA  300
            +L+ E+QSGS+A N+++ST +V+NPTH+AVCL Y+  ET+LP+VIE+G D +A LI+ LA
Sbjct  239  RLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALLIIKLA  298

Query  301  EQSGIPVVENIALARALHRDVACGDTIPEQFFEPVAALLRMALELDY  347
            E+ +IPV+EN+ LAR++   V  G+ I E++FEPVA ++R+A++LDY
Sbjct  299  ERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

37) SE451236_12975 in NC_021820


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  197 bits (732),  Expect = 6e-52, Method: Compositional matrix adjust.
 Identities = 142/352 (41%), Positives = 233/352 (67%), Gaps = 14/352 (3%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTE+PT KK+RD +K G+V KS E+ S  Q + L+ +F ++    +  L   I+ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   QLVNKPFSYALTQLSHALIES-----LTSAL-LFLGAGVIVATVGSVFLQVGVVIASKAI  114
            + +NKPF +A+ Q+  ++++      L   L +FLG++  + +      Q+G ++A   I
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIIS------QIGFILAVDKI  114

Query  115  GFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLAC  174
                + I+  +N+K+IFS+ SV EL KS +KV ++SLIF ++   Y + F  +     A 
Sbjct  115  KPSMQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFT-RMTAY  173

Query  175  GVLVVSSLIKWL-WVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQM  233
            G L++++++  L W GV+  Y++ +++D+ FQ     K  KMSKD+VK+E KD +G+P++
Sbjct  174  GALIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEI  233

Query  234  KTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANY  293
            K  R+ ++SEIQSGSLA+++K+S  +V+NPTHIAVCL Y+  + ++P V+E+G D +A  
Sbjct  234  KGERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALL  293

Query  294  IVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDY  345
            I+++AER  IPV+ENV+LARS++  V +G+ I E LFEPVA ++R+ M +DY
Sbjct  294  IIKLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

38) SEEB0189_12425 in NC_021844


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  197 bits (732),  Expect = 6e-52, Method: Compositional matrix adjust.
 Identities = 142/352 (41%), Positives = 233/352 (67%), Gaps = 14/352 (3%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTE+PT KK+RD +K G+V KS E+ S  Q + L+ +F ++    +  L   I+ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   QLVNKPFSYALTQLSHALIES-----LTSAL-LFLGAGVIVATVGSVFLQVGVVIASKAI  114
            + +NKPF +A+ Q+  ++++      L   L +FLG++  + +      Q+G ++A   I
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIIS------QIGFILAVDKI  114

Query  115  GFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLAC  174
                + I+  +N+K+IFS+ SV EL KS +KV ++SLIF ++   Y + F  +     A 
Sbjct  115  KPSMQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFT-RMTAY  173

Query  175  GVLVVSSLIKWL-WVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQM  233
            G L++++++  L W GV+  Y++ +++D+ FQ     K  KMSKD+VK+E KD +G+P++
Sbjct  174  GALIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEI  233

Query  234  KTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANY  293
            K  R+ ++SEIQSGSLA+++K+S  +V+NPTHIAVCL Y+  + ++P V+E+G D +A  
Sbjct  234  KGERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALL  293

Query  294  IVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDY  345
            I+++AER  IPV+ENV+LARS++  V +G+ I E LFEPVA ++R+ M +DY
Sbjct  294  IIKLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

39) SPAB_01903 in NC_010102


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  197 bits (732),  Expect = 6e-52, Method: Compositional matrix adjust.
 Identities = 142/352 (41%), Positives = 233/352 (67%), Gaps = 14/352 (3%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTE+PT KK+RD +K G+V KS E+ S  Q + L+ +F ++    +  L   I+ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   QLVNKPFSYALTQLSHALIES-----LTSAL-LFLGAGVIVATVGSVFLQVGVVIASKAI  114
            + +NKPF +A+ Q+  ++++      L   L +FLG++  + +      Q+G ++A   I
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIIS------QIGFILAVDKI  114

Query  115  GFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLAC  174
                + I+  +N+K+IFS+ SV EL KS +KV ++SLIF ++   Y + F  +     A 
Sbjct  115  KPSMQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFT-RMTAY  173

Query  175  GVLVVSSLIKWL-WVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQM  233
            G L++++++  L W GV+  Y++ +++D+ FQ     K  KMSKD+VK+E KD +G+P++
Sbjct  174  GALIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEI  233

Query  234  KTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANY  293
            K  R+ ++SEIQSGSLA+++K+S  +V+NPTHIAVCL Y+  + ++P V+E+G D +A  
Sbjct  234  KGERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALL  293

Query  294  IVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDY  345
            I+++AER  IPV+ENV+LARS++  V +G+ I E LFEPVA ++R+ M +DY
Sbjct  294  IIKLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

40) ssaU in NC_016856


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  197 bits (732),  Expect = 6e-52, Method: Compositional matrix adjust.
 Identities = 142/352 (41%), Positives = 233/352 (67%), Gaps = 14/352 (3%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTE+PT KK+RD +K G+V KS E+ S  Q + L+ +F ++    +  L   I+ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   QLVNKPFSYALTQLSHALIES-----LTSAL-LFLGAGVIVATVGSVFLQVGVVIASKAI  114
            + +NKPF +A+ Q+  ++++      L   L +FLG++  + +      Q+G ++A   I
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIIS------QIGFILAVDKI  114

Query  115  GFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLAC  174
                + I+  +N+K+IFS+ SV EL KS +KV ++SLIF ++   Y + F  +     A 
Sbjct  115  KPSMQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFT-RMTAY  173

Query  175  GVLVVSSLIKWL-WVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQM  233
            G L++++++  L W GV+  Y++ +++D+ FQ     K  KMSKD+VK+E KD +G+P++
Sbjct  174  GALIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEI  233

Query  234  KTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANY  293
            K  R+ ++SEIQSGSLA+++K+S  +V+NPTHIAVCL Y+  + ++P V+E+G D +A  
Sbjct  234  KGERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALL  293

Query  294  IVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDY  345
            I+++AER  IPV+ENV+LARS++  V +G+ I E LFEPVA ++R+ M +DY
Sbjct  294  IIKLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

41) ssaU in NC_017046


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  197 bits (732),  Expect = 6e-52, Method: Compositional matrix adjust.
 Identities = 142/352 (41%), Positives = 233/352 (67%), Gaps = 14/352 (3%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTE+PT KK+RD +K G+V KS E+ S  Q + L+ +F ++    +  L   I+ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   QLVNKPFSYALTQLSHALIES-----LTSAL-LFLGAGVIVATVGSVFLQVGVVIASKAI  114
            + +NKPF +A+ Q+  ++++      L   L +FLG++  + +      Q+G ++A   I
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIIS------QIGFILAVDKI  114

Query  115  GFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLAC  174
                + I+  +N+K+IFS+ SV EL KS +KV ++SLIF ++   Y + F  +     A 
Sbjct  115  KPSMQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFT-RMTAY  173

Query  175  GVLVVSSLIKWL-WVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQM  233
            G L++++++  L W GV+  Y++ +++D+ FQ     K  KMSKD+VK+E KD +G+P++
Sbjct  174  GALIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEI  233

Query  234  KTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANY  293
            K  R+ ++SEIQSGSLA+++K+S  +V+NPTHIAVCL Y+  + ++P V+E+G D +A  
Sbjct  234  KGERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALL  293

Query  294  IVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDY  345
            I+++AER  IPV+ENV+LARS++  V +G+ I E LFEPVA ++R+ M +DY
Sbjct  294  IIKLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

42) ssaU in NC_003197


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  197 bits (732),  Expect = 6e-52, Method: Compositional matrix adjust.
 Identities = 142/352 (41%), Positives = 233/352 (67%), Gaps = 14/352 (3%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTE+PT KK+RD +K G+V KS E+ S  Q + L+ +F ++    +  L   I+ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   QLVNKPFSYALTQLSHALIES-----LTSAL-LFLGAGVIVATVGSVFLQVGVVIASKAI  114
            + +NKPF +A+ Q+  ++++      L   L +FLG++  + +      Q+G ++A   I
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIIS------QIGFILAVDKI  114

Query  115  GFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLAC  174
                + I+  +N+K+IFS+ SV EL KS +KV ++SLIF ++   Y + F  +     A 
Sbjct  115  KPSMQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFT-RMTAY  173

Query  175  GVLVVSSLIKWL-WVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQM  233
            G L++++++  L W GV+  Y++ +++D+ FQ     K  KMSKD+VK+E KD +G+P++
Sbjct  174  GALIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEI  233

Query  234  KTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANY  293
            K  R+ ++SEIQSGSLA+++K+S  +V+NPTHIAVCL Y+  + ++P V+E+G D +A  
Sbjct  234  KGERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALL  293

Query  294  IVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDY  345
            I+++AER  IPV+ENV+LARS++  V +G+ I E LFEPVA ++R+ M +DY
Sbjct  294  IIKLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

43) ssaU in NC_016810


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  197 bits (732),  Expect = 6e-52, Method: Compositional matrix adjust.
 Identities = 142/352 (41%), Positives = 233/352 (67%), Gaps = 14/352 (3%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTE+PT KK+RD +K G+V KS E+ S  Q + L+ +F ++    +  L   I+ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   QLVNKPFSYALTQLSHALIES-----LTSAL-LFLGAGVIVATVGSVFLQVGVVIASKAI  114
            + +NKPF +A+ Q+  ++++      L   L +FLG++  + +      Q+G ++A   I
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIIS------QIGFILAVDKI  114

Query  115  GFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLAC  174
                + I+  +N+K+IFS+ SV EL KS +KV ++SLIF ++   Y + F  +     A 
Sbjct  115  KPSMQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFT-RMTAY  173

Query  175  GVLVVSSLIKWL-WVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQM  233
            G L++++++  L W GV+  Y++ +++D+ FQ     K  KMSKD+VK+E KD +G+P++
Sbjct  174  GALIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEI  233

Query  234  KTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANY  293
            K  R+ ++SEIQSGSLA+++K+S  +V+NPTHIAVCL Y+  + ++P V+E+G D +A  
Sbjct  234  KGERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALL  293

Query  294  IVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDY  345
            I+++AER  IPV+ENV+LARS++  V +G+ I E LFEPVA ++R+ M +DY
Sbjct  294  IIKLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

44) ssaU in NC_016857


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  197 bits (732),  Expect = 6e-52, Method: Compositional matrix adjust.
 Identities = 142/352 (41%), Positives = 233/352 (67%), Gaps = 14/352 (3%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTE+PT KK+RD +K G+V KS E+ S  Q + L+ +F ++    +  L   I+ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   QLVNKPFSYALTQLSHALIES-----LTSAL-LFLGAGVIVATVGSVFLQVGVVIASKAI  114
            + +NKPF +A+ Q+  ++++      L   L +FLG++  + +      Q+G ++A   I
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIIS------QIGFILAVDKI  114

Query  115  GFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLAC  174
                + I+  +N+K+IFS+ SV EL KS +KV ++SLIF ++   Y + F  +     A 
Sbjct  115  KPSMQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFT-RMTAY  173

Query  175  GVLVVSSLIKWL-WVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQM  233
            G L++++++  L W GV+  Y++ +++D+ FQ     K  KMSKD+VK+E KD +G+P++
Sbjct  174  GALIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEI  233

Query  234  KTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANY  293
            K  R+ ++SEIQSGSLA+++K+S  +V+NPTHIAVCL Y+  + ++P V+E+G D +A  
Sbjct  234  KGERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALL  293

Query  294  IVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDY  345
            I+++AER  IPV+ENV+LARS++  V +G+ I E LFEPVA ++R+ M +DY
Sbjct  294  IIKLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

45) STMDT12_C14380 in NC_016860


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  197 bits (732),  Expect = 6e-52, Method: Compositional matrix adjust.
 Identities = 142/352 (41%), Positives = 233/352 (67%), Gaps = 14/352 (3%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTE+PT KK+RD +K G+V KS E+ S  Q + L+ +F ++    +  L   I+ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   QLVNKPFSYALTQLSHALIES-----LTSAL-LFLGAGVIVATVGSVFLQVGVVIASKAI  114
            + +NKPF +A+ Q+  ++++      L   L +FLG++  + +      Q+G ++A   I
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIIS------QIGFILAVDKI  114

Query  115  GFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLAC  174
                + I+  +N+K+IFS+ SV EL KS +KV ++SLIF ++   Y + F  +     A 
Sbjct  115  KPSMQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFT-RMTAY  173

Query  175  GVLVVSSLIKWL-WVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQM  233
            G L++++++  L W GV+  Y++ +++D+ FQ     K  KMSKD+VK+E KD +G+P++
Sbjct  174  GALIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEI  233

Query  234  KTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANY  293
            K  R+ ++SEIQSGSLA+++K+S  +V+NPTHIAVCL Y+  + ++P V+E+G D +A  
Sbjct  234  KGERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALL  293

Query  294  IVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDY  345
            I+++AER  IPV+ENV+LARS++  V +G+ I E LFEPVA ++R+ M +DY
Sbjct  294  IIKLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

46) STU288_03430 in NC_021151


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  197 bits (732),  Expect = 6e-52, Method: Compositional matrix adjust.
 Identities = 142/352 (41%), Positives = 233/352 (67%), Gaps = 14/352 (3%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTE+PT KK+RD +K G+V KS E+ S  Q + L+ +F ++    +  L   I+ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   QLVNKPFSYALTQLSHALIES-----LTSAL-LFLGAGVIVATVGSVFLQVGVVIASKAI  114
            + +NKPF +A+ Q+  ++++      L   L +FLG++  + +      Q+G ++A   I
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIIS------QIGFILAVDKI  114

Query  115  GFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLAC  174
                + I+  +N+K+IFS+ SV EL KS +KV ++SLIF ++   Y + F  +     A 
Sbjct  115  KPSMQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFT-RMTAY  173

Query  175  GVLVVSSLIKWL-WVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQM  233
            G L++++++  L W GV+  Y++ +++D+ FQ     K  KMSKD+VK+E KD +G+P++
Sbjct  174  GALIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEI  233

Query  234  KTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANY  293
            K  R+ ++SEIQSGSLA+++K+S  +V+NPTHIAVCL Y+  + ++P V+E+G D +A  
Sbjct  234  KGERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALL  293

Query  294  IVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDY  345
            I+++AER  IPV+ENV+LARS++  V +G+ I E LFEPVA ++R+ M +DY
Sbjct  294  IIKLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

47) ssaU in NC_016863


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  197 bits (732),  Expect = 6e-52, Method: Compositional matrix adjust.
 Identities = 142/352 (41%), Positives = 233/352 (67%), Gaps = 14/352 (3%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTE+PT KK+RD +K G+V KS E+ S  Q + L+ +F ++    +  L   I+ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   QLVNKPFSYALTQLSHALIES-----LTSAL-LFLGAGVIVATVGSVFLQVGVVIASKAI  114
            + +NKPF +A+ Q+  ++++      L   L +FLG++  + +      Q+G ++A   I
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIIS------QIGFILAVDKI  114

Query  115  GFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLAC  174
                + I+  +N+K+IFS+ SV EL KS +KV ++SLIF ++   Y + F  +     A 
Sbjct  115  KPSMQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFT-RMTAY  173

Query  175  GVLVVSSLIKWL-WVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQM  233
            G L++++++  L W GV+  Y++ +++D+ FQ     K  KMSKD+VK+E KD +G+P++
Sbjct  174  GALIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEI  233

Query  234  KTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANY  293
            K  R+ ++SEIQSGSLA+++K+S  +V+NPTHIAVCL Y+  + ++P V+E+G D +A  
Sbjct  234  KGERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALL  293

Query  294  IVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDY  345
            I+++AER  IPV+ENV+LARS++  V +G+ I E LFEPVA ++R+ M +DY
Sbjct  294  IIKLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

48) CFSAN001921_10035 in NC_021814


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  197 bits (732),  Expect = 6e-52, Method: Compositional matrix adjust.
 Identities = 142/352 (41%), Positives = 233/352 (67%), Gaps = 14/352 (3%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTE+PT KK+RD +K G+V KS E+ S  Q + L+ +F ++    +  L   I+ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   QLVNKPFSYALTQLSHALIES-----LTSAL-LFLGAGVIVATVGSVFLQVGVVIASKAI  114
            + +NKPF +A+ Q+  ++++      L   L +FLG++  + +      Q+G ++A   I
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIIS------QIGFILAVDKI  114

Query  115  GFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLAC  174
                + I+  +N+K+IFS+ SV EL KS +KV ++SLIF ++   Y + F  +     A 
Sbjct  115  KPSMQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFT-RMTAY  173

Query  175  GVLVVSSLIKWL-WVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQM  233
            G L++++++  L W GV+  Y++ +++D+ FQ     K  KMSKD+VK+E KD +G+P++
Sbjct  174  GALIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEI  233

Query  234  KTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANY  293
            K  R+ ++SEIQSGSLA+++K+S  +V+NPTHIAVCL Y+  + ++P V+E+G D +A  
Sbjct  234  KGERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALL  293

Query  294  IVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDY  345
            I+++AER  IPV+ENV+LARS++  V +G+ I E LFEPVA ++R+ M +DY
Sbjct  294  IIKLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

49) SEEH1578_16345 in NC_021810


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  197 bits (731),  Expect = 8e-52, Method: Compositional matrix adjust.
 Identities = 143/352 (41%), Positives = 234/352 (67%), Gaps = 14/352 (3%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTE+PT KK+RD +K G+V KS E+ S  Q + L+ +F ++    +  L   I+ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   QLVNKPFSYALTQLSHVLIES-----LASVL-LFLGAGVIVATVGSVFLQVGVVIASKAI  114
            + +NKPF +A+ Q+   +++      L+ VL +FLG++  + +      Q+G ++A   I
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIIS------QIGFILAVDKI  114

Query  115  GFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLAC  174
                + I+  +N+K+IFS+ SV EL KS +KV ++SLIF ++   Y + F  +     A 
Sbjct  115  KPSMQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFT-RMTAY  173

Query  175  GVLVVSSLIKWL-WVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQM  233
            G L++++++  L W GV+  Y++ +++D+ FQ     K  KMSKD+VK+E KD +G+P++
Sbjct  174  GALIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEI  233

Query  234  KTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANY  293
            K  R+ ++SEIQSGSLA+++K+S  +V+NPTHIAVCL Y+  + ++P V+E+G D +A  
Sbjct  234  KGERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALL  293

Query  294  IVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDY  345
            I+++AER  IPV+ENV+LARS++  V +G+ I E LFEPVA ++R+ M +DY
Sbjct  294  IIKLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

50) SU5_02038 in NC_017623


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  197 bits (731),  Expect = 8e-52, Method: Compositional matrix adjust.
 Identities = 143/352 (41%), Positives = 234/352 (67%), Gaps = 14/352 (3%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTE+PT KK+RD +K G+V KS E+ S  Q + L+ +F ++    +  L   I+ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   QLVNKPFSYALTQLSHVLIES-----LASVL-LFLGAGVIVATVGSVFLQVGVVIASKAI  114
            + +NKPF +A+ Q+   +++      L+ VL +FLG++  + +      Q+G ++A   I
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIIS------QIGFILAVDKI  114

Query  115  GFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLAC  174
                + I+  +N+K+IFS+ SV EL KS +KV ++SLIF ++   Y + F  +     A 
Sbjct  115  KPSMQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFT-RMTAY  173

Query  175  GVLVVSSLIKWL-WVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQM  233
            G L++++++  L W GV+  Y++ +++D+ FQ     K  KMSKD+VK+E KD +G+P++
Sbjct  174  GALIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEI  233

Query  234  KTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANY  293
            K  R+ ++SEIQSGSLA+++K+S  +V+NPTHIAVCL Y+  + ++P V+E+G D +A  
Sbjct  234  KGERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALL  293

Query  294  IVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDY  345
            I+++AER  IPV+ENV+LARS++  V +G+ I E LFEPVA ++R+ M +DY
Sbjct  294  IIKLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

51) CFSAN002069_01890 in NC_021812


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  197 bits (731),  Expect = 8e-52, Method: Compositional matrix adjust.
 Identities = 143/352 (41%), Positives = 234/352 (67%), Gaps = 14/352 (3%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTE+PT KK+RD +K G+V KS E+ S  Q + L+ +F ++    +  L   I+ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   QLVNKPFSYALTQLSHVLIES-----LASVL-LFLGAGVIVATVGSVFLQVGVVIASKAI  114
            + +NKPF +A+ Q+   +++      L+ VL +FLG++  + +      Q+G ++A   I
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIIS------QIGFILAVDKI  114

Query  115  GFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLAC  174
                + I+  +N+K+IFS+ SV EL KS +KV ++SLIF ++   Y + F  +     A 
Sbjct  115  KPSMQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFT-RMTAY  173

Query  175  GVLVVSSLIKWL-WVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQM  233
            G L++++++  L W GV+  Y++ +++D+ FQ     K  KMSKD+VK+E KD +G+P++
Sbjct  174  GALIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEI  233

Query  234  KTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANY  293
            K  R+ ++SEIQSGSLA+++K+S  +V+NPTHIAVCL Y+  + ++P V+E+G D +A  
Sbjct  234  KGERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALL  293

Query  294  IVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDY  345
            I+++AER  IPV+ENV+LARS++  V +G+ I E LFEPVA ++R+ M +DY
Sbjct  294  IIKLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

52) SeHA_C1555 in NC_011083


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  197 bits (731),  Expect = 8e-52, Method: Compositional matrix adjust.
 Identities = 143/352 (41%), Positives = 234/352 (67%), Gaps = 14/352 (3%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTE+PT KK+RD +K G+V KS E+ S  Q + L+ +F ++    +  L   I+ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   QLVNKPFSYALTQLSHVLIES-----LASVL-LFLGAGVIVATVGSVFLQVGVVIASKAI  114
            + +NKPF +A+ Q+   +++      L+ VL +FLG++  + +      Q+G ++A   I
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIIS------QIGFILAVDKI  114

Query  115  GFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLAC  174
                + I+  +N+K+IFS+ SV EL KS +KV ++SLIF ++   Y + F  +     A 
Sbjct  115  KPSMQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFT-RMTAY  173

Query  175  GVLVVSSLIKWL-WVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQM  233
            G L++++++  L W GV+  Y++ +++D+ FQ     K  KMSKD+VK+E KD +G+P++
Sbjct  174  GALIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEI  233

Query  234  KTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANY  293
            K  R+ ++SEIQSGSLA+++K+S  +V+NPTHIAVCL Y+  + ++P V+E+G D +A  
Sbjct  234  KGERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALL  293

Query  294  IVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDY  345
            I+++AER  IPV+ENV+LARS++  V +G+ I E LFEPVA ++R+ M +DY
Sbjct  294  IIKLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

53) SNSL254_A1532 in NC_011080


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  197 bits (731),  Expect = 8e-52, Method: Compositional matrix adjust.
 Identities = 143/352 (41%), Positives = 234/352 (67%), Gaps = 14/352 (3%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTE+PT KK+RD +K G+V KS E+ S  Q + L+ +F ++    +  L   I+ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   QLVNKPFSYALTQLSHVLIES-----LASVL-LFLGAGVIVATVGSVFLQVGVVIASKAI  114
            + +NKPF +A+ Q+   +++      L+ VL +FLG++  + +      Q+G ++A   I
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIIS------QIGFILAVDKI  114

Query  115  GFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLAC  174
                + I+  +N+K+IFS+ SV EL KS +KV ++SLIF ++   Y + F  +     A 
Sbjct  115  KPSMQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFT-RMTAY  173

Query  175  GVLVVSSLIKWL-WVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQM  233
            G L++++++  L W GV+  Y++ +++D+ FQ     K  KMSKD+VK+E KD +G+P++
Sbjct  174  GALIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEI  233

Query  234  KTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANY  293
            K  R+ ++SEIQSGSLA+++K+S  +V+NPTHIAVCL Y+  + ++P V+E+G D +A  
Sbjct  234  KGERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALL  293

Query  294  IVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDY  345
            I+++AER  IPV+ENV+LARS++  V +G+ I E LFEPVA ++R+ M +DY
Sbjct  294  IIKLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

54) SN31241_24910 in NC_021902


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  197 bits (731),  Expect = 8e-52, Method: Compositional matrix adjust.
 Identities = 143/352 (41%), Positives = 234/352 (67%), Gaps = 14/352 (3%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTE+PT KK+RD +K G+V KS E+ S  Q + L+ +F ++    +  L   I+ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   QLVNKPFSYALTQLSHVLIES-----LASVL-LFLGAGVIVATVGSVFLQVGVVIASKAI  114
            + +NKPF +A+ Q+   +++      L+ VL +FLG++  + +      Q+G ++A   I
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIIS------QIGFILAVDKI  114

Query  115  GFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLAC  174
                + I+  +N+K+IFS+ SV EL KS +KV ++SLIF ++   Y + F  +     A 
Sbjct  115  KPSMQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFT-RMTAY  173

Query  175  GVLVVSSLIKWL-WVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQM  233
            G L++++++  L W GV+  Y++ +++D+ FQ     K  KMSKD+VK+E KD +G+P++
Sbjct  174  GALIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEI  233

Query  234  KTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANY  293
            K  R+ ++SEIQSGSLA+++K+S  +V+NPTHIAVCL Y+  + ++P V+E+G D +A  
Sbjct  234  KGERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALL  293

Query  294  IVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDY  345
            I+++AER  IPV+ENV+LARS++  V +G+ I E LFEPVA ++R+ M +DY
Sbjct  294  IIKLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

55) SeAg_B1752 in NC_011149


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  196 bits (729),  Expect = 1e-51, Method: Compositional matrix adjust.
 Identities = 142/352 (41%), Positives = 233/352 (67%), Gaps = 14/352 (3%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTE+PT KK+RD +K G+V KS E+ S  Q + L+ +F ++    +  L   I+ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   QLVNKPFSYALTQLSHALIES-----LTSAL-LFLGAGVIVATVGSVFLQVGVVIASKAI  114
            + +NKPF +A+ Q+  ++++      L   L +FLG++  + +      Q+G ++A   I
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIIS------QIGFILAVDKI  114

Query  115  GFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLAC  174
                + I+  +N+K+IFS+ SV EL KS +KV ++SLIF ++   Y + F  +     A 
Sbjct  115  KPSMQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFT-RMTAY  173

Query  175  GVLVVSSLIKWL-WVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQM  233
            G L++++++  L W GV+  Y++ +++D+ FQ     K  KMSKD+VK+E KD +G+P++
Sbjct  174  GALIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEI  233

Query  234  KTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANY  293
            K  R+ ++SEIQSGSLA+++K+S  +V+NPTHIAVCL Y+  + ++P V+E+G D +A  
Sbjct  234  KGERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALL  293

Query  294  IVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDY  345
            I+++AER  IPV+ENV+LARS++  V +G+ I E LFEPVA ++R+ M +DY
Sbjct  294  IIKLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

56) SBOV14181 in NC_022241


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  196 bits (729),  Expect = 1e-51, Method: Compositional matrix adjust.
 Identities = 142/352 (41%), Positives = 233/352 (67%), Gaps = 14/352 (3%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTE+PT KK+RD +K G+V KS E+ S  Q + L+ +F ++    +  L   I+ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   QLVNKPFSYALTQLSHALIES-----LTSAL-LFLGAGVIVATVGSVFLQVGVVIASKAI  114
            + +NKPF +A+ Q+  ++++      L   L +FLG++  + +      Q+G ++A   I
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIIS------QIGFILAVDKI  114

Query  115  GFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLAC  174
                + I+  +N+K+IFS+ SV EL KS +KV ++SLIF ++   Y + F  +     A 
Sbjct  115  KPSMQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFT-RMTAY  173

Query  175  GVLVVSSLIKWL-WVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQM  233
            G L++++++  L W GV+  Y++ +++D+ FQ     K  KMSKD+VK+E KD +G+P++
Sbjct  174  GALIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEI  233

Query  234  KTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANY  293
            K  R+ ++SEIQSGSLA+++K+S  +V+NPTHIAVCL Y+  + ++P V+E+G D +A  
Sbjct  234  KGERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALL  293

Query  294  IVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDY  345
            I+++AER  IPV+ENV+LARS++  V +G+ I E LFEPVA ++R+ M +DY
Sbjct  294  IIKLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

57) SeD_A1921 in NC_011205


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  196 bits (729),  Expect = 1e-51, Method: Compositional matrix adjust.
 Identities = 143/352 (41%), Positives = 234/352 (67%), Gaps = 14/352 (3%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTE+PT KK+RD +K G+V KS E+ S  Q + L+ +F ++    +  L   I+ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   QLVNKPFSYALTQLSHILIES-----LASVL-LFLGAGVIVATVGSVFLQVGVVIASKAI  114
            + +NKPF +A+ Q+   +++      L+ VL +FLG++  + +      Q+G ++A   I
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIIS------QIGFILAVDKI  114

Query  115  GFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLAC  174
                + I+  +N+K+IFS+ SV EL KS +KV ++SLIF ++   Y + F  +     A 
Sbjct  115  KPSMQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFT-RMTAY  173

Query  175  GVLVVSSLIKWL-WVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQM  233
            G L++++++  L W GV+  Y++ +++D+ FQ     K  KMSKD+VK+E KD +G+P++
Sbjct  174  GALIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEI  233

Query  234  KTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANY  293
            K  R+ ++SEIQSGSLA+++K+S  +V+NPTHIAVCL Y+  + ++P V+E+G D +A  
Sbjct  234  KGERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALL  293

Query  294  IVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDY  345
            I+++AER  IPV+ENV+LARS++  V +G+ I E LFEPVA ++R+ M +DY
Sbjct  294  IIKLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

58) CFSAN001992_04480 in NC_020307


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  196 bits (728),  Expect = 1e-51, Method: Compositional matrix adjust.
 Identities = 142/352 (41%), Positives = 234/352 (67%), Gaps = 14/352 (3%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIASITFTL  60
            MSEKTE+PT KK+RD +K G+V KS E+ S  Q + L+ +F ++    +  L + I+ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   QLVNKPFSYALTQLTHALIES-----LTSAL-LFLGAGVIVATVGSVFLQVGVVIASKAI  114
            + +NKPF +A+ Q+  ++++      L   L +FLG++  + +      Q+G ++A   I
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIIS------QIGFILAVDKI  114

Query  115  GFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLAC  174
                + I+  +N+K+IFS+ SV EL KS +KV ++SLIF ++   Y + F  +     A 
Sbjct  115  KPSMQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFT-RMTAY  173

Query  175  GLLVVSSLIKWL-WVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQM  233
            G L++++++  L W GV+  Y++ +++D+ FQ     K  KMSKD+VK+E KD +G+P++
Sbjct  174  GALIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEI  233

Query  234  KTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANY  293
            K  R+ ++SEIQSGSLA+++K+S  +V+NPTHIAVCL Y+  + ++P V+E+G D +A  
Sbjct  234  KGERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALL  293

Query  294  IVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDY  345
            I+++AER  IPV+ENV+LARS++  V +G+ I E LFEPVA ++R+ M +DY
Sbjct  294  IIKLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

59) SSPA1329 in NC_011147


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  196 bits (729),  Expect = 1e-51, Method: Compositional matrix adjust.
 Identities = 142/352 (41%), Positives = 233/352 (67%), Gaps = 14/352 (3%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTE+PT KK+RD +K G+V KS E+ S  Q + L+ +F ++    +  L   I+ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   QLVNKPFSYALTQLSHALIES-----LTSAL-LFLGAGVIVATVGSVFLQVGVVIASKAI  114
            + +NKPF +A+ Q+  ++++      L   L +FLG++  + +      Q+G ++A   I
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIIS------QIGFILAVDKI  114

Query  115  GFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLAC  174
                + I+  +N+K+IFS+ SV EL KS +KV ++SLIF ++   Y + F  +     A 
Sbjct  115  KPSMQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFT-RMTAY  173

Query  175  GVLVVSSLIKWL-WVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQM  233
            G L++++++  L W GV+  Y++ +++D+ FQ     K  KMSKD+VK+E KD +G+P++
Sbjct  174  GALIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEI  233

Query  234  KTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANY  293
            K  R+ ++SEIQSGSLA+++K+S  +V+NPTHIAVCL Y+  + ++P V+E+G D +A  
Sbjct  234  KGERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALL  293

Query  294  IVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDY  345
            I+++AER  IPV+ENV+LARS++  V +G+ I E LFEPVA ++R+ M +DY
Sbjct  294  IIKLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

60) ssaU in NC_006511


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  196 bits (729),  Expect = 1e-51, Method: Compositional matrix adjust.
 Identities = 142/352 (41%), Positives = 233/352 (67%), Gaps = 14/352 (3%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTE+PT KK+RD +K G+V KS E+ S  Q + L+ +F ++    +  L   I+ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   QLVNKPFSYALTQLSHALIES-----LTSAL-LFLGAGVIVATVGSVFLQVGVVIASKAI  114
            + +NKPF +A+ Q+  ++++      L   L +FLG++  + +      Q+G ++A   I
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIIS------QIGFILAVDKI  114

Query  115  GFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLAC  174
                + I+  +N+K+IFS+ SV EL KS +KV ++SLIF ++   Y + F  +     A 
Sbjct  115  KPSMQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFT-RMTAY  173

Query  175  GVLVVSSLIKWL-WVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQM  233
            G L++++++  L W GV+  Y++ +++D+ FQ     K  KMSKD+VK+E KD +G+P++
Sbjct  174  GALIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEI  233

Query  234  KTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANY  293
            K  R+ ++SEIQSGSLA+++K+S  +V+NPTHIAVCL Y+  + ++P V+E+G D +A  
Sbjct  234  KGERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALL  293

Query  294  IVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDY  345
            I+++AER  IPV+ENV+LARS++  V +G+ I E LFEPVA ++R+ M +DY
Sbjct  294  IIKLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

61) SeSA_A1518 in NC_011094


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  196 bits (728),  Expect = 1e-51, Method: Compositional matrix adjust.
 Identities = 142/352 (41%), Positives = 234/352 (67%), Gaps = 14/352 (3%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIASITFTL  60
            MSEKTE+PT KK+RD +K G+V KS E+ S  Q + L+ +F ++    +  L + I+ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   QLVNKPFSYALTQLTHALIES-----LTSAL-LFLGAGVIVATVGSVFLQVGVVIASKAI  114
            + +NKPF +A+ Q+  ++++      L   L +FLG++  + +      Q+G ++A   I
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIIS------QIGFILAVDKI  114

Query  115  GFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLAC  174
                + I+  +N+K+IFS+ SV EL KS +KV ++SLIF ++   Y + F  +     A 
Sbjct  115  KPSMQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFT-RMTAY  173

Query  175  GLLVVSSLIKWL-WVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQM  233
            G L++++++  L W GV+  Y++ +++D+ FQ     K  KMSKD+VK+E KD +G+P++
Sbjct  174  GALIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEI  233

Query  234  KTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANY  293
            K  R+ ++SEIQSGSLA+++K+S  +V+NPTHIAVCL Y+  + ++P V+E+G D +A  
Sbjct  234  KGERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALL  293

Query  294  IVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDY  345
            I+++AER  IPV+ENV+LARS++  V +G+ I E LFEPVA ++R+ M +DY
Sbjct  294  IIKLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

62) ssaU in NC_003198


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  196 bits (729),  Expect = 1e-51, Method: Compositional matrix adjust.
 Identities = 142/352 (41%), Positives = 233/352 (67%), Gaps = 14/352 (3%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTE+PT KK+RD +K G+V KS E+ S  Q + L+ +F ++    +  L   I+ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   QLVNKPFSYALTQLSHALIES-----LTSAL-LFLGAGVIVATVGSVFLQVGVVIASKAI  114
            + +NKPF +A+ Q+  ++++      L   L +FLG++  + +      Q+G ++A   I
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIIS------QIGFILAVDKI  114

Query  115  GFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLAC  174
                + I+  +N+K+IFS+ SV EL KS +KV ++SLIF ++   Y + F  +     A 
Sbjct  115  KPSMQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFT-RMTAY  173

Query  175  GVLVVSSLIKWL-WVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQM  233
            G L++++++  L W GV+  Y++ +++D+ FQ     K  KMSKD+VK+E KD +G+P++
Sbjct  174  GALIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEI  233

Query  234  KTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANY  293
            K  R+ ++SEIQSGSLA+++K+S  +V+NPTHIAVCL Y+  + ++P V+E+G D +A  
Sbjct  234  KGERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALL  293

Query  294  IVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDY  345
            I+++AER  IPV+ENV+LARS++  V +G+ I E LFEPVA ++R+ M +DY
Sbjct  294  IIKLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

63) STBHUCCB_13790 in NC_016832


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  196 bits (729),  Expect = 1e-51, Method: Compositional matrix adjust.
 Identities = 142/352 (41%), Positives = 233/352 (67%), Gaps = 14/352 (3%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTE+PT KK+RD +K G+V KS E+ S  Q + L+ +F ++    +  L   I+ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   QLVNKPFSYALTQLSHALIES-----LTSAL-LFLGAGVIVATVGSVFLQVGVVIASKAI  114
            + +NKPF +A+ Q+  ++++      L   L +FLG++  + +      Q+G ++A   I
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIIS------QIGFILAVDKI  114

Query  115  GFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLAC  174
                + I+  +N+K+IFS+ SV EL KS +KV ++SLIF ++   Y + F  +     A 
Sbjct  115  KPSMQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFT-RMTAY  173

Query  175  GVLVVSSLIKWL-WVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQM  233
            G L++++++  L W GV+  Y++ +++D+ FQ     K  KMSKD+VK+E KD +G+P++
Sbjct  174  GALIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEI  233

Query  234  KTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANY  293
            K  R+ ++SEIQSGSLA+++K+S  +V+NPTHIAVCL Y+  + ++P V+E+G D +A  
Sbjct  234  KGERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALL  293

Query  294  IVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDY  345
            I+++AER  IPV+ENV+LARS++  V +G+ I E LFEPVA ++R+ M +DY
Sbjct  294  IIKLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

64) TY21A_06555 in NC_021176


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  196 bits (729),  Expect = 1e-51, Method: Compositional matrix adjust.
 Identities = 142/352 (41%), Positives = 233/352 (67%), Gaps = 14/352 (3%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTE+PT KK+RD +K G+V KS E+ S  Q + L+ +F ++    +  L   I+ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   QLVNKPFSYALTQLSHALIES-----LTSAL-LFLGAGVIVATVGSVFLQVGVVIASKAI  114
            + +NKPF +A+ Q+  ++++      L   L +FLG++  + +      Q+G ++A   I
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIIS------QIGFILAVDKI  114

Query  115  GFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLAC  174
                + I+  +N+K+IFS+ SV EL KS +KV ++SLIF ++   Y + F  +     A 
Sbjct  115  KPSMQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFT-RMTAY  173

Query  175  GVLVVSSLIKWL-WVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQM  233
            G L++++++  L W GV+  Y++ +++D+ FQ     K  KMSKD+VK+E KD +G+P++
Sbjct  174  GALIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEI  233

Query  234  KTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANY  293
            K  R+ ++SEIQSGSLA+++K+S  +V+NPTHIAVCL Y+  + ++P V+E+G D +A  
Sbjct  234  KGERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALL  293

Query  294  IVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDY  345
            I+++AER  IPV+ENV+LARS++  V +G+ I E LFEPVA ++R+ M +DY
Sbjct  294  IIKLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

65) ssaU in NC_004631


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  196 bits (729),  Expect = 1e-51, Method: Compositional matrix adjust.
 Identities = 142/352 (41%), Positives = 233/352 (67%), Gaps = 14/352 (3%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTE+PT KK+RD +K G+V KS E+ S  Q + L+ +F ++    +  L   I+ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   QLVNKPFSYALTQLSHALIES-----LTSAL-LFLGAGVIVATVGSVFLQVGVVIASKAI  114
            + +NKPF +A+ Q+  ++++      L   L +FLG++  + +      Q+G ++A   I
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIIS------QIGFILAVDKI  114

Query  115  GFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLAC  174
                + I+  +N+K+IFS+ SV EL KS +KV ++SLIF ++   Y + F  +     A 
Sbjct  115  KPSMQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFT-RMTAY  173

Query  175  GVLVVSSLIKWL-WVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQM  233
            G L++++++  L W GV+  Y++ +++D+ FQ     K  KMSKD+VK+E KD +G+P++
Sbjct  174  GALIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEI  233

Query  234  KTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANY  293
            K  R+ ++SEIQSGSLA+++K+S  +V+NPTHIAVCL Y+  + ++P V+E+G D +A  
Sbjct  234  KGERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALL  293

Query  294  IVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDY  345
            I+++AER  IPV+ENV+LARS++  V +G+ I E LFEPVA ++R+ M +DY
Sbjct  294  IIKLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

66) ssaU in NC_011294


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  195 bits (725),  Expect = 2e-51, Method: Compositional matrix adjust.
 Identities = 142/352 (41%), Positives = 233/352 (67%), Gaps = 14/352 (3%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTE+PT KK+RD +K G+V KS E+ S  Q + L+ +F ++    +  L   I+ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   QLVNKPFSYALTQLSHALIES-----LTSAL-LFLGAGVIVATVGSVFLQVGVVIASKAI  114
            + +NKPF +A+ Q+  ++++      L   L +FLG++  + +      Q+G ++A   I
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIIS------QIGFILAVDKI  114

Query  115  GFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLAC  174
                + I+  +N+K+IFS+ SV EL KS +KV ++SLIF ++   Y + F  +     A 
Sbjct  115  KPSMQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFT-RMTAY  173

Query  175  GLLVVSSLIKWL-WVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQM  233
            G L++++++  L W GV+  Y++ +++D+ FQ     K  KMSKD+VK+E KD +G+P++
Sbjct  174  GALIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEI  233

Query  234  KTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANY  293
            K  R+ ++SEIQSGSLA+++K+S  +V+NPTHIAVCL Y+  + ++P V+E+G D +A  
Sbjct  234  KGERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALL  293

Query  294  IVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDY  345
            I+++AER  IPV+ENV+LARS++  V +G+ I E LFEPVA ++R+ M +DY
Sbjct  294  IIKLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

67) ssaU in NC_011274


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  195 bits (725),  Expect = 2e-51, Method: Compositional matrix adjust.
 Identities = 142/352 (41%), Positives = 233/352 (67%), Gaps = 14/352 (3%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTE+PT KK+RD +K G+V KS E+ S  Q + L+ +F ++    +  L   I+ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   QLVNKPFSYALTQLSHALIES-----LTSAL-LFLGAGVIVATVGSVFLQVGVVIASKAI  114
            + +NKPF +A+ Q+  ++++      L   L +FLG++  + +      Q+G ++A   I
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIIS------QIGFILAVDKI  114

Query  115  GFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLAC  174
                + I+  +N+K+IFS+ SV EL KS +KV ++SLIF ++   Y + F  +     A 
Sbjct  115  KPSMQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFT-RMTAY  173

Query  175  GLLVVSSLIKWL-WVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQM  233
            G L++++++  L W GV+  Y++ +++D+ FQ     K  KMSKD+VK+E KD +G+P++
Sbjct  174  GALIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEI  233

Query  234  KTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANY  293
            K  R+ ++SEIQSGSLA+++K+S  +V+NPTHIAVCL Y+  + ++P V+E+G D +A  
Sbjct  234  KGERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALL  293

Query  294  IVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDY  345
            I+++AER  IPV+ENV+LARS++  V +G+ I E LFEPVA ++R+ M +DY
Sbjct  294  IIKLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

68) ssaU in NC_022221


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  195 bits (725),  Expect = 2e-51, Method: Compositional matrix adjust.
 Identities = 142/352 (41%), Positives = 233/352 (67%), Gaps = 14/352 (3%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTE+PT KK+RD +K G+V KS E+ S  Q + L+ +F ++    +  L   I+ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   QLVNKPFSYALTQLSHALIES-----LTSAL-LFLGAGVIVATVGSVFLQVGVVIASKAI  114
            + +NKPF +A+ Q+  ++++      L   L +FLG++  + +      Q+G ++A   I
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIIS------QIGFILAVDKI  114

Query  115  GFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLAC  174
                + I+  +N+K+IFS+ SV EL KS +KV ++SLIF ++   Y + F  +     A 
Sbjct  115  KPSMQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFT-RMTAY  173

Query  175  GLLVVSSLIKWL-WVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQM  233
            G L++++++  L W GV+  Y++ +++D+ FQ     K  KMSKD+VK+E KD +G+P++
Sbjct  174  GALIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEI  233

Query  234  KTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANY  293
            K  R+ ++SEIQSGSLA+++K+S  +V+NPTHIAVCL Y+  + ++P V+E+G D +A  
Sbjct  234  KGERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALL  293

Query  294  IVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDY  345
            I+++AER  IPV+ENV+LARS++  V +G+ I E LFEPVA ++R+ M +DY
Sbjct  294  IIKLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

69) ssaU in NC_016831


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  195 bits (725),  Expect = 2e-51, Method: Compositional matrix adjust.
 Identities = 142/352 (41%), Positives = 233/352 (67%), Gaps = 14/352 (3%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTE+PT KK+RD +K G+V KS E+ S  Q + L+ +F ++    +  L   I+ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   QLVNKPFSYALTQLSHALIES-----LTSAL-LFLGAGVIVATVGSVFLQVGVVIASKAI  114
            + +NKPF +A+ Q+  ++++      L   L +FLG++  + +      Q+G ++A   I
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIIS------QIGFILAVDKI  114

Query  115  GFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLAC  174
                + I+  +N+K+IFS+ SV EL KS +KV ++SLIF ++   Y + F  +     A 
Sbjct  115  KPSMQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFT-RMTAY  173

Query  175  GLLVVSSLIKWL-WVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQM  233
            G L++++++  L W GV+  Y++ +++D+ FQ     K  KMSKD+VK+E KD +G+P++
Sbjct  174  GALIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEI  233

Query  234  KTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANY  293
            K  R+ ++SEIQSGSLA+++K+S  +V+NPTHIAVCL Y+  + ++P V+E+G D +A  
Sbjct  234  KGERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALL  293

Query  294  IVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDY  345
            I+++AER  IPV+ENV+LARS++  V +G+ I E LFEPVA ++R+ M +DY
Sbjct  294  IIKLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

70) I137_05715 in NC_021984


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  195 bits (725),  Expect = 2e-51, Method: Compositional matrix adjust.
 Identities = 142/352 (41%), Positives = 233/352 (67%), Gaps = 14/352 (3%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTE+PT KK+RD +K G+V KS E+ S  Q + L+ +F ++    +  L   I+ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   QLVNKPFSYALTQLSHALIES-----LTSAL-LFLGAGVIVATVGSVFLQVGVVIASKAI  114
            + +NKPF +A+ Q+  ++++      L   L +FLG++  + +      Q+G ++A   I
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIIS------QIGFILAVDKI  114

Query  115  GFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLAC  174
                + I+  +N+K+IFS+ SV EL KS +KV ++SLIF ++   Y + F  +     A 
Sbjct  115  KPSMQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFT-RMTAY  173

Query  175  GLLVVSSLIKWL-WVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQM  233
            G L++++++  L W GV+  Y++ +++D+ FQ     K  KMSKD+VK+E KD +G+P++
Sbjct  174  GALIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEI  233

Query  234  KTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANY  293
            K  R+ ++SEIQSGSLA+++K+S  +V+NPTHIAVCL Y+  + ++P V+E+G D +A  
Sbjct  234  KGERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALL  293

Query  294  IVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDY  345
            I+++AER  IPV+ENV+LARS++  V +G+ I E LFEPVA ++R+ M +DY
Sbjct  294  IIKLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

71) STMMW_14271 in NC_016854


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  195 bits (724),  Expect = 3e-51, Method: Compositional matrix adjust.
 Identities = 142/352 (41%), Positives = 233/352 (67%), Gaps = 14/352 (3%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTE+PT KK+RD +K G+V KS E+ S  Q + L+ +F ++    +  L   I+ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   QLVNKPFSYALTQLSHALIES-----LTSAL-LFLGAGVIVATVGSVFLQVGVVIASKAI  114
            + +NKPF +A+ Q+  ++++      L   L +FLG++  + +      Q+G ++A   I
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIIS------QIGFILAVDKI  114

Query  115  GFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLAC  174
                + I+  +N+K+IFS+ SV EL KS +KV ++SLIF ++   Y + F  +     A 
Sbjct  115  KPSMQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFT-RMTAY  173

Query  175  GVLVVSSLIKWL-WVGVMVFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEYKDLEGDPQM  233
            G L++++++  L W GV+  Y++ +++D+ FQ     K  KMSKD+VK+E KD +G+P++
Sbjct  174  GALIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEI  233

Query  234  KTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANY  293
            K  R+ ++SEIQSGSLA+++K+S  +V+NPTHIAVCL Y+  + ++P V+E+G D +A  
Sbjct  234  KGERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALL  293

Query  294  IVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDY  345
            I+++AER  IPV+ENV+LARS++  V +G+ I E LFEPVA ++R+ M +DY
Sbjct  294  IIKLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

72) CFSAN002050_13505 in NC_021818


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  194 bits (722),  Expect = 4e-51, Method: Compositional matrix adjust.
 Identities = 142/352 (41%), Positives = 233/352 (67%), Gaps = 14/352 (3%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTE+PT KK+RD +K G+V KS E+ S  Q + L+ +F ++    +  L   I+ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   QLVNKPFSYALTQLSHALIES-----LTSAL-LFLGAGVIVATVGSVFLQVGGVIASKAI  114
            + +NKPF +A+ Q+  ++++      L   L +FLG++  + +      Q+G ++A   I
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIIS------QIGFILAVDKI  114

Query  115  GFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLAC  174
                + I+  +N+K+IFS+ SV EL KS +KV ++SLIF ++   Y + F  +     A 
Sbjct  115  KPSMQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFT-RMTAY  173

Query  175  GLLVVSSLIKWL-WVGVMAFYIVVGILDYSFQYYKVRKDLKMSKDDVKQEHKDLEGDPQM  233
            G L++++++  L W GV+  Y++ +++D+ FQ     K  KMSKD+VK+E KD +G+P++
Sbjct  174  GALIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEI  233

Query  234  KTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANY  293
            K  R+ ++SEIQSGSLA+++K+S  +V+NPTHIAVCL Y+  + ++P V+E+G D +A  
Sbjct  234  KGERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALL  293

Query  294  IVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDY  345
            I+++AER  IPV+ENV+LARS++  V +G+ I E LFEPVA ++R+ M +DY
Sbjct  294  IIKLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

73) ssaU in NC_012125


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  194 bits (721),  Expect = 5e-51, Method: Compositional matrix adjust.
 Identities = 142/352 (41%), Positives = 233/352 (67%), Gaps = 14/352 (3%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTE+PT KK+RD +K G+V KS E+ S  Q + L+ +F ++    +  L   I+ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   QLVNKPFSYALTQLSHALIES-----LTSAL-LFLGAGVIVATVGSVFLQVGGVIASKAI  114
            + +NKPF +A+ Q+  ++++      L   L +FLG++  + +      Q+G ++A   I
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIIS------QIGFILAVDKI  114

Query  115  GFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLAC  174
                + I+  +N+K+IFS+ SV EL KS +KV ++SLIF ++   Y + F  +     A 
Sbjct  115  KPSMQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFT-RMTAY  173

Query  175  GLLVVSSLIKWL-WVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQM  233
            G L++++++  L W GV+  Y++ +++D+ FQ     K  KMSKD+VK+E KD +G+P++
Sbjct  174  GALIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEI  233

Query  234  KTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANY  293
            K  R+ ++SEIQSGSLA+++K+S  +V+NPTHIAVCL Y+  + ++P V+E+G D +A  
Sbjct  234  KGERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALL  293

Query  294  IVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDY  345
            I+++AER  IPV+ENV+LARS++  V +G+ I E LFEPVA ++R+ M +DY
Sbjct  294  IIKLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

74) SARI_01560 in NC_010067


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  190 bits (704),  Expect = 9e-50, Method: Compositional matrix adjust.
 Identities = 142/349 (41%), Positives = 236/349 (68%), Gaps = 8/349 (2%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALFLYFHFLTEKVILRIIELINFTL  60
            MSEKTE+PT KK+RD +K G+V KS E+ S  Q + LF +F +     +  +  LI+ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   QLINKPFSYALTQlsyslvdslssvilflGAGIIISTVASVFLQVGVVIASKAIGFKSDH  120
            + +NKPF +A+ Q+  +++D     IL +   +++++ A+++ Q+G ++A   I    + 
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIISQIGFILAVDKIKPSMQK  120

Query  121  INPVSNFKQIFSLHSVVELCKSTLKVIILSLILAFFFYYYVSTF----RALPYCGLACAL  176
            I+  +N+K+IFS+ SV EL KS +KV ++SLI+ ++   Y++ F    R  +Y +L   +
Sbjct  121  ISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFTRMTAYGALI--I  178

Query  177  PVVFCLIKWLWVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQMKTR  236
            +  F ++  LW GV+  Y++ +++D+ FQ     K  KMSKD+VK+E KD +G+P++K  
Sbjct  179  AAFFVFL--LWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEIKGE  236

Query  237  RREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTDMPIPRVLEKGSDAQANYIVN  296
            R+ ++SEIQSGSLA+++K+S  +V+NPTHIAVCL Y+  + ++P V+E+G D +A  I++
Sbjct  237  RKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALLIIK  296

Query  297  IAERNCIPVVENVDLARSLFFEVERGDKIPETLFEPVAALLRMVMKIDY  345
            +AER  IPV+ENV+LARS++  V +G+ I E LFEPVA ++R+ M +DY
Sbjct  297  LAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345

75) ssaU in NC_006905


> JQ747540|42|G38|397782025|AFO66403.1|Salmonella_enterica_subsp._salamae_serovar_Sofia_S1635|+|36744..37781|escU|SESS1635_03850|putative 
LEE-encoded type III secretion system factor
Length=345

 Score =  188 bits (699),  Expect = 2e-49, Method: Compositional matrix adjust.
 Identities = 141/352 (41%), Positives = 232/352 (66%), Gaps = 14/352 (3%)

Query  1    MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFFTEKMILILIESITFTL  60
            MSEKTE+PT KK+RD +K G+V KS E+ S  Q + L+ +F ++    +  L   I+ T+
Sbjct  1    MSEKTEKPTPKKIRDLKKKGDVTKSEEVLSAAQSLILFSFFSLYGSSFFSALSSLISMTF  60

Query  61   QLVNKPFSYALTQLSHALIES-----LTSAL-LFLGAGVIVATVGSVFLQVGVVIASKAI  114
            + +NKPF +A+ Q+  ++++      L   L +FLG++  + +      Q+G ++A   I
Sbjct  61   DTLNKPFLFAINQIIAGVLDISFFYILPIVLVMFLGSAATIIS------QIGFILAVDKI  114

Query  115  GFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIfafffyyyaSTFRALPYCGLAC  174
                + I+  +N+K+IFS+ SV EL KS +KV ++SLIF ++   Y + F  +     A 
Sbjct  115  KPSMQKISIKNNIKNIFSIKSVFELFKSIFKVALISLIFYIIMHTYIGEFANFT-RMTAY  173

Query  175  GLLVVSSLIKWL-WVGVMAFYIVVGILDYSFQYYKIRKDLKMSKDDVKQEHKDLEGDPQM  233
            G L++++++  L W GV+  Y++ +++D+ FQ     K  KMSKD+VK+E KD +G+P++
Sbjct  174  GALIIAAFFVFLLWKGVLFGYLIFSVFDFWFQKHESMKKTKMSKDEVKREAKDTDGNPEI  233

Query  234  KTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVGLGYHPTDMPIPRVLEKGSDAQANY  293
            K  R+ ++SEIQSGSLA+++K+S  +V+NPTHIAV L Y+  + ++P V+E+G D +A  
Sbjct  234  KGERKRLHSEIQSGSLAKNIKKSTVIVKNPTHIAVCLYYRLGETALPMVIENGKDKEALL  293

Query  294  IVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVAALLRMVMKIDY  345
            I+++AER  IPV+ENV+LARS++  V +G+ I E LFEPVA ++R+ M +DY
Sbjct  294  IIKLAERYDIPVIENVQLARSIYGKVKKGQYITEDLFEPVAQVIRIAMDLDY  345