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PAthogenisity Island DataBase (PAI DB)

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Homologs of hrpA gene of AY597277

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) hrpA2
( YP_273531.1 )

type III helper protein HrpA2

NC_005773
(Pseudomonas syringae 1448A)

2e-31

2) HrpA2
( YP_234284.1 )

type III helper protein HrpA2

NC_007005
(Pseudomonas syringae B728a)

1e-30

• Sequence Alignments

1) hrpA2 in NC_005773


> AY597277|42|G42|51103013|AAT96160.1|Pseudomonas_viridiflava_LP23.1a|-|35942..36268|hrpA|-|HrpA
Length=108

 Score =  128 bits (469),  Expect = 2e-31, Method: Compositional matrix adjust.
 Identities = 85/108 (79%), Positives = 92/108 (86%), Gaps = 0/108 (0%)

Query  1    MNIMSSLTNAGRGVVNTVGGAAQGINSVKSSADRNIALTKNTGSTDSIDATRSSISKGDA  60
            M I SSL+  +  V+NT GG AQGINS KS+ DRN+ALTKNTGSTDSIDATR +I  GD 
Sbjct  1    MTITSSLSGFANKVINTGGGVAQGINSGKSAIDRNVALTKNTGSTDSIDATRDTIRSGDK  60

Query  61   KSAELDGTANEENGLLRETSMLAGFEDKKEALSNQIVASKIRNSVVQF  108
            KSAELD TA+ ENGLLRETSMLAGFEDKKEALSNQIVASKIRNSVVQF
Sbjct  61   KSAELDTTADSENGLLRETSMLAGFEDKKEALSNQIVASKIRNSVVQF  108

2) HrpA2 in NC_007005


> AY597277|42|G42|51103013|AAT96160.1|Pseudomonas_viridiflava_LP23.1a|-|35942..36268|hrpA|-|HrpA
Length=108

 Score =  125 bits (458),  Expect = 1e-30, Method: Compositional matrix adjust.
 Identities = 84/108 (78%), Positives = 91/108 (85%), Gaps = 0/108 (0%)

Query  1    MTIMSSLAGAGRGVVNTIGGAAQGINSVKSSADRNAALVSNTGSTDSIDATRSSISKGDA  60
            MTI SSL+G +  V+NT GG AQGINS KS+ DRN AL  NTGSTDSIDATR +I  GD 
Sbjct  1    MTITSSLSGFANKVINTGGGVAQGINSGKSAIDRNVALTKNTGSTDSIDATRDTIRSGDK  60

Query  61   KSAELDGTANEENGLLRESSMLAGFEDKKEALSNQIVASKIRNSVVQF  108
            KSAELD TA+ ENGLLRE+SMLAGFEDKKEALSNQIVASKIRNSVVQF
Sbjct  61   KSAELDTTADSENGLLRETSMLAGFEDKKEALSNQIVASKIRNSVVQF  108