Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of hsdM gene of AB462393

314

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) M013TW_0063
( YP_005296533.1 )

Type I restriction-modification system,DNA-methyltransferase subunit M

NC_016928
(Staphylococcus aureus M013)

0.0

100

2) hsdM
( YP_008584156.1 )

type I restriction-modification system DNA methylase

NC_022442
(Staphylococcus aureus SA957)

0.0

100

3) hsdM
( YP_251979.1 )

type I restriction-modification system DNA methylase

NC_007168
(Staphylococcus haemolyticus JCSC1435)

0.0

4) hsdM
( YP_005754069.1 )

type I restriction-modification system DNA methylase

NC_017349
(Staphylococcus aureus LGA251)

0.0

5) hsdM
( YP_005738226.1 )

type I site-specific deoxyribonuclease methyltransferase subunit, HsdM

NC_017338
(Staphylococcus aureus JKD6159)

0.0

6) SAEMRSA15_00450
( YP_006236422.1 )

type I restriction-modification system DNA methylase

NC_017763
(Staphylococcus aureus HO 5096 0412)

0.0

7) Clocl_3625
( YP_005048018.1 )

type I restriction-modification system methyltransferase subunit

NC_016627
(Clostridium clariflavum DSM 19732)

2e-171

8) HM1_3075
( YP_001681591.1 )

N-6 DNA methylase

NC_010337
(Heliobacterium modesticaldum Ice1)

3e-170

9) LRI_1103
( YP_008099457.1 )

N-6 DNA methylase

NC_021494
(Lactobacillus reuteri I5007)

1e-168

10) hsdM
( YP_004649012.1 )

type I restriction-modification system DNA-methyltransferase

NC_015697
(Lactobacillus reuteri SD2112)

7e-169

11) Dacet_2555
( YP_003505270.1 )

adenine-specific DNA-methyltransferase

NC_013943
(Denitrovibrio acetiphilus DSM 12809)

5e-168

12) Lreu_0869
( YP_001271469.1 )

N-6 DNA methylase

NC_009513
(Lactobacillus reuteri DSM 20016)

2e-167

13) LAR_0816
( YP_001841812.1 )

type I restriction system DNA methylase

NC_010609
(Lactobacillus reuteri JCM 1112)

2e-167

14) Cyan7822_0692
( YP_003885999.1 )

adenine-specific DNA-methyltransferase

NC_014501
(Cyanothece sp. PCC 7822)

2e-165

15) Mhun_2789
( YP_504202.1 )

N-6 DNA methylase

NC_007796
(Methanospirillum hungatei JF-1)

2e-165

16) Cylst_5223
( YP_007149937.1 )

type I restriction-modification system methyltransferase subunit

NC_019757
(Cylindrospermum stagnale PCC 7417)

7e-165

17) LFE_0347
( YP_005468199.1 )

N-6 DNA methylase

NC_017094
(Leptospirillum ferrooxidans C2-3)

1e-164

18) hsdM2
( YP_005268560.1 )

type I restriction-modification system methyltransferase subunit HsdM2

NC_016894
(Acetobacterium woodii DSM 1030)

1e-163

19) hsdM
( YP_004570381.1 )

type I restriction-modification system DNA methylase

NC_015634
(Bacillus coagulans 2-6)

2e-163

20) Rhom172_1470
( YP_004825229.1 )

adenine-specific DNA-methyltransferase

NC_015966
(Rhodothermus marinus SG0.5JP17-172)

5e-163

21) AFE_2793
( YP_002427163.1 )

type I restriction-modification system, M subunit

NC_011761
(Acidithiobacillus ferrooxidans ATCC 23270)

1e-162

22) Lferr_2418
( YP_002220821.1 )

N-6 DNA methylase

NC_011206
(Acidithiobacillus ferrooxidans ATCC 53993)

1e-162

23) Ngar_c29130
( YP_006863489.1 )

N-6 DNA methylase

NC_018719
(Candidatus Nitrososphaera gargensis enrichment culture Ga9.2)

4e-162

24) Desdi_0308
( YP_007219252.1 )

type I restriction-modification system methyltransferase subunit

NC_019903
(Desulfitobacterium dichloroeliminans LMG P-21439)

4e-162

25) DCF50_p1411
( YP_006913402.1 )

Type I restriction-modification system, DNA-methyltransferase subunit M

NC_018867
(Dehalobacter sp. CF)

5e-162

26) Amico_0449
( YP_003553314.1 )

N-6 DNA methylase

NC_014011
(Aminobacterium colombiense DSM 12261)

3e-161

27) SCE1572_29145
( YP_008152218.1 )

hypothetical protein

NC_021658
(Sorangium cellulosum So0157-2)

1e-160

28) Veis_3006
( YP_997757.1 )

N-6 DNA methylase

NC_008786
(Verminephrobacter eiseniae EF01-2)

2e-160

29) GYMC52_2379
( YP_004132909.1 )

adenine-specific DNA-methyltransferase

NC_014915
(Geobacillus sp. Y412MC52)

2e-159

30) GYMC61_0286
( YP_003251461.1 )

adenine-specific DNA-methyltransferase

NC_013411
(Geobacillus sp. Y412MC61)

2e-159

31) hsdM
( YP_002952896.1 )

type I restriction enzyme M protein

NC_012796
(Desulfovibrio magneticus RS-1)

3e-159

32) Galf_1218
( YP_003847010.1 )

adenine-specific DNA-methyltransferase

NC_014394
(Gallionella capsiferriformans ES-2)

3e-159

33) hsdM1
( YP_001620582.1 )

type I site-specific restriction-modification system, M (modification) subunit

NC_010163
(Acholeplasma laidlawii PG-8A)

9e-159

34) CAP2UW1_2711
( YP_003167923.1 )

N-6 DNA methylase

NC_013194
(Candidatus Accumulibacter phosphatis UW-1)

1e-156

35) hsdM
( YP_002759693.1 )

type I restriction-modification system DNA methylase

NC_012489
(Gemmatimonas aurantiaca T-27)

3e-156

36) Acid345_3758
( YP_592832.1 )

N-6 DNA methylase

NC_008009
(Candidatus Koribacter versatilis Ellin345)

2e-155

37) Caur_1810
( YP_001635416.1 )

N-6 DNA methylase

NC_010175
(Chloroflexus aurantiacus J-10-fl)

2e-155

38) Chy400_1958
( YP_002569689.1 )

N-6 DNA methylase

NC_012032
(Chloroflexus sp. Y-400-fl)

2e-155

39) GWCH70_1644
( YP_002949697.1 )

N-6 DNA methylase

NC_012793
(Geobacillus sp. WCH70)

4e-155

40) Turpa_2670
( YP_006440816.1 )

N-6 DNA methylase

NC_018020
(Turneriella parva DSM 21527)

8e-155

41) MmarC6_0039
( YP_001548097.1 )

N-6 DNA methylase

NC_009975
(Methanococcus maripaludis C6)

3e-154

42) GYY_04435
( YP_004742505.1 )

N-6 DNA methylase

NC_015847
(Methanococcus maripaludis X1)

6e-154

43) MmarC7_0019
( YP_001329241.1 )

N-6 DNA methylase

NC_009637
(Methanococcus maripaludis C7)

9e-154

44) Syn6312_0891
( YP_007060642.1 )

type I restriction-modification system methyltransferase subunit

NC_019680
(Synechococcus sp. PCC 6312)

9e-154

45) Dgeo_2017
( YP_605480.1 )

N-6 DNA methylase

NC_008025
(Deinococcus geothermalis DSM 11300)

2e-153

46) Mzhil_1432
( YP_004616495.1 )

adenine-specific DNA-methyltransferase

NC_015676
(Methanosalsum zhilinae DSM 4017)

6e-153

47) XOO_3262
( YP_452291.1 )

type I restriction system adenine methylase

NC_007705
(Xanthomonas oryzae MAFF 311018)

8e-153

48) hsdM-1
( YP_202096.1 )

type I restriction system adenine methylase

NC_006834
(Xanthomonas oryzae KACC10331)

9e-153

49) Mrub_2453
( YP_003508224.1 )

adenine-specific DNA-methyltransferase

NC_013946
(Meiothermus ruber DSM 1279)

2e-152

50) K649_10265
( YP_007880842.1 )

adenine-specific DNA-methyltransferase

NC_021081
(Meiothermus ruber DSM 1279)

2e-152

51) PGA2_c07360
( YP_006561997.1 )

type I restriction-modification system, M subunit

NC_018286
(Phaeobacter gallaeciensis 2.10)

3e-151

52) GLX_22350
( YP_004869017.1 )

type I DNA methyltransferase M subunit

NC_016027
(Gluconacetobacter xylinus NBRC 3288)

1e-149

53) Thein_1578
( YP_004626402.1 )

adenine-specific DNA-methyltransferase

NC_015681
(Thermodesulfatator indicus DSM 15286)

3e-149

54) Veis_3128
( YP_997877.1 )

N-6 DNA methylase

NC_008786
(Verminephrobacter eiseniae EF01-2)

2e-148

55) hsdM-1
( NP_661571.1 )

type I restriction system adenine methylase

NC_002932
(Chlorobium tepidum TLS)

1e-147

56) SFBM_0018
( YP_004770543.1 )

type I restriction-modification system, methyltransferase subunit

NC_015913
(Candidatus Arthromitus sp. mouse isolate)

2e-147

57) rplK
( YP_005667736.1 )

50S ribosomal protein L11

NC_017294
(Candidatus Arthromitus sp. SFB-mouse-Yit)

2e-147

58) SYN_00494
( YP_462083.1 )

type I restriction-modification system methylation subunit

NC_007759
(Syntrophus aciditrophicus SB)

3e-146

59) XF2742
( NP_300019.1 )

type I restriction-modification system DNA methylase

NC_002488
(Xylella fastidiosa 9a5c)

4e-146

60) Ethha_0469
( YP_004090785.1 )

adenine-specific DNA-methyltransferase

NC_014828
(Ethanoligenens harbinense YUAN-3)

5e-146

61) Shel_17670
( YP_003144135.1 )

type I restriction-modification system methyltransferase subunit

NC_013165
(Slackia heliotrinireducens DSM 20476)

7e-146

62) hsdM
( YP_008105288.1 )

type I restriction-modification system DNA methylase

NC_021499
(Pseudomonas resinovorans NBRC 106553)

7e-146

63) BHWA1_00436
( YP_002720605.1 )

N-6 DNA methylase

NC_012225
(Brachyspira hyodysenteriae WA1)

1e-145

64) F7308_0300
( YP_004646828.1 )

type I restriction-modification system, DNA-methyltransferase subunit M

NC_015696
(Francisella sp. TX077308)

3e-145

65) AL1_19050
( YP_007817020.1 )

Type I restriction-modification system methyltransferase subunit

NC_021030
(Alistipes shahii WAL 8301)

3e-144

66) Alfi_1804
( YP_006410816.1 )

type I restriction-modification system methyltransferase subunit

NC_018011
(Alistipes finegoldii DSM 17242)

5e-144

67) Glaag_3862
( YP_004436057.1 )

adenine-specific DNA-methyltransferase

NC_015497
(Glaciecola sp. 4H-3-7+YE-5)

5e-144

68) R2APBS1_3877
( YP_007592163.1 )

type I restriction-modification system methyltransferase subunit

NC_020541
(Rhodanobacter sp. 2APBS1)

1e-142

69) Neut_0541
( YP_746781.1 )

N-6 DNA methylase

NC_008344
(Nitrosomonas eutropha C91)

2e-142

70) STH1910
( YP_075739.1 )

type I restriction-modification system DNA methylase

NC_006177
(Symbiobacterium thermophilum IAM 14863)

2e-142

71) BIL_01960
( YP_007766871.1 )

Type I restriction-modification system methyltransferase subunit

NC_021008
(Bifidobacterium longum F8)

5e-142

72) BLLJ_1481
( YP_004221240.1 )

DNA methylase

NC_015067
(Bifidobacterium longum JCM 1217)

5e-142

73) hsdM-1
( YP_264164.1 )

type I restriction-modification system, M subunit

NC_007204
(Psychrobacter arcticus 273-4)

6e-142

74) hsdM
( YP_001854376.1 )

type I restriction enzyme M protein

NC_010617
(Kocuria rhizophila DC2201)

1e-141

75) hsdM
( YP_771130.1 )

putative type I restriction enzyme

NC_008384
(Rhizobium leguminosarum 3841)

2e-141

76) hsdM
( YP_006762595.1 )

type I restriction modification system, M subunit HsdM

NC_018645
(Desulfobacula toluolica Tol2)

2e-141

77) Mmol_0229
( YP_003047666.1 )

adenine-specific DNA-methyltransferase

NC_012968
(Methylotenera mobilis JLW8)

3e-141

78) Tmath_1864
( YP_003677566.1 )

adenine-specific DNA-methyltransferase

NC_014209
(Thermoanaerobacter mathranii A3)

3e-141

79) Jden_2248
( YP_003162186.1 )

N-6 DNA methylase

NC_013174
(Jonesia denitrificans DSM 20603)

3e-141

80) DaAHT2_1004
( YP_003690324.1 )

Site-specific DNA-methyltransferase (adenine-specific)

NC_014216
(Desulfurivibrio alkaliphilus AHT2)

3e-141

81) Mpet_1674
( YP_003894865.1 )

adenine-specific DNA-methyltransferase

NC_014507
(Methanoplanus petrolearius DSM 11571)

4e-141

82) Mbur_1222
( YP_565894.1 )

N-6 DNA methylase

NC_007955
(Methanococcoides burtonii DSM 6242)

4e-141

83) Desru_3582
( YP_004547071.1 )

adenine-specific DNA-methyltransferase

NC_015589
(Desulfotomaculum ruminis DSM 2154)

8e-141

84) FP2_17100
( YP_007837444.1 )

Type I restriction-modification system methyltransferase subunit

NC_021042
(Faecalibacterium prausnitzii L2/6)

1e-140

85) Calow_2047
( YP_004003358.1 )

Site-specific DNA-methyltransferase (adenine-specific)

NC_014657
(Caldicellulosiruptor owensensis OL)

1e-140

86) hsdM
( YP_003189355.1 )

type I DNA methyltransferase M subunit HsdM

NC_013211
(Acetobacter pasteurianus IFO 3283)

4e-140

87) hsdM
( YP_005479602.1 )

type I DNA methyltransferase M subunit HsdM

NC_017105
(Acetobacter pasteurianus IFO 3283)

4e-140

88) hsdM
( YP_005485098.1 )

type I DNA methyltransferase M subunit HsdM

NC_017113
(Acetobacter pasteurianus IFO 3283)

4e-140

89) hsdM
( YP_005485517.1 )

type I DNA methyltransferase M subunit HsdM

NC_017118
(Acetobacter pasteurianus IFO 3283)

4e-140

90) hsdM
( YP_005488382.1 )

type I DNA methyltransferase M subunit HsdM

NC_017122
(Acetobacter pasteurianus IFO 3283)

4e-140

91) hsdM
( YP_005491188.1 )

type I DNA methyltransferase M subunit HsdM

NC_017126
(Acetobacter pasteurianus IFO 3283)

4e-140

92) hsdM
( YP_005491606.1 )

type I DNA methyltransferase M subunit HsdM

NC_017131
(Acetobacter pasteurianus IFO 3283)

4e-140

93) hsdM
( YP_005500355.1 )

type I DNA methyltransferase M subunit HsdM

NC_017149
(Acetobacter pasteurianus IFO 3283)

4e-140

94) CLS_14440
( YP_007849054.1 )

Type I restriction-modification system methyltransferase subunit

NC_021047
(Clostridium saccharolyticum K10)

6e-140

95) Zmob_1779
( YP_005527872.1 )

adenine-specific DNA-methyltransferase

NC_017180
(Zymomonas mobilis ATCC 10988)

8e-140

96) Pcryo_1359
( YP_580622.1 )

N-6 DNA methylase

NC_007969
(Psychrobacter cryohalolentis K5)

1e-139

97) PSYCG_07145
( YP_008163299.1 )

DNA methyltransferase

NC_021661
(Psychrobacter sp. G)

1e-139

98) FP2_13100
( YP_007837109.1 )

Type I restriction-modification system methyltransferase subunit

NC_021042
(Faecalibacterium prausnitzii L2/6)

3e-139

99) MM_2198
( NP_634222.1 )

type I restriction-modification system specificity subunit

NC_003901
(Methanosarcina mazei Go1)

3e-139

100) alr4597
( NP_488637.1 )

type I restriction-modification system DNA methylase

NC_003272
(Nostoc sp. PCC 7120)

3e-139

101) ECS88_4968
( YP_002394438.1 )

type I restriction-modification system methyltransferase subunit; (hsdM-like)

NC_011742
(Escherichia coli S88)

4e-139

102) ECNA114_4590
( YP_006141712.1 )

Putative type I restriction-modification system,DNA-methyltransferase subunit M

NC_017644
(Escherichia coli NA114)

6e-139

103) MmTuc01_2250
( YP_007490844.1 )

Type I restriction-modification system, DNA- methyltransferase subunit M

NC_020389
(Methanosarcina mazei Tuc01)

7e-139

104) Metho_1314
( YP_007313066.1 )

type I restriction-modification system methyltransferase subunit

NC_019977
(Methanomethylovorans hollandica DSM 15978)

1e-138

105) Clocl_1695
( YP_005046233.1 )

type I restriction-modification system methyltransferase subunit

NC_016627
(Clostridium clariflavum DSM 19732)

8e-139

106) hsdM
( YP_006171408.1 )

Type I restriction-modification system methyltransferase subunit

NC_017663
(Escherichia coli P12b)

9e-139

107) Desgi_1008
( YP_007944222.1 )

type I restriction-modification system methyltransferase subunit

NC_021184
(Desulfotomaculum gibsoniae DSM 7213)

2e-138

108) HMPREF0868_0489
( YP_003474820.1 )

putative type I restriction-modification system, M subunit

NC_013895
(Clostridiales genomosp. UPII9-5)

3e-138

109) Calni_0575
( YP_004050650.1 )

site-specific DNA-methyltransferase (adenine-specific)

NC_014758
(Calditerrivibrio nitroreducens DSM 19672)

3e-138

110) Nhal_0897
( YP_003526459.1 )

adenine-specific DNA-methyltransferase

NC_013960
(Nitrosococcus halophilus Nc 4)

5e-138

111) TEQUI_0820
( YP_004129901.1 )

type I restriction-modification system, DNA-methyltransferase subunit M

NC_014914
(Taylorella equigenitalis MCE9)

5e-138

112) Tbis_2509
( YP_003653105.1 )

site-specific DNA-methyltransferase

NC_014165
(Thermobispora bispora DSM 43833)

6e-138

113) Anacy_6051
( YP_007160098.1 )

Site-specific DNA-methyltransferase (adenine-specific)

NC_019773
(Anabaena cylindrica PCC 7122)

1e-137

114) SEEB0189_19740
( YP_008310228.1 )

DNA methyltransferase

NC_021844
(Salmonella enterica CFSAN000189)

1e-137

115) NIS_1707
( YP_001357170.1 )

type I restriction-modification system, M subunit

NC_009662
(Nitratiruptor sp. SB155-2)

7e-138

116) Ppro_1858
( YP_901527.1 )

N-6 DNA methylase

NC_008609
(Pelobacter propionicus DSM 2379)

9e-138

117) TREAZ_2435
( YP_004528983.1 )

type I restriction-modification system, M subunit

NC_015577
(Treponema azotonutricium ZAS-9)

2e-137

118) CE2327
( NP_738937.1 )

type I restriction-modification system methylase

NC_004369
(Corynebacterium efficiens YS-314)

2e-137

119) Kvar_4504
( YP_003441410.1 )

adenine-specific DNA-methyltransferase

NC_013850
(Klebsiella variicola At-22)

2e-137

120) hsdM
( YP_002229048.1 )

type I restriction-modification system methyltransferase

NC_011274
(Salmonella enterica 287/91)

2e-137

121) hsdM
( YP_008484007.1 )

Type I restriction-modification system methyltransferase

NC_022221
(Salmonella enterica CDC1983-67)

2e-137

122) SeD_A4931
( YP_002218397.1 )

type I restriction-modification system, M subunit

NC_011205
(Salmonella enterica CT_02021853)

2e-137

123) hsdM
( YP_002246303.1 )

type I restriction-modification system methyltransferase

NC_011294
(Salmonella enterica P125109)

2e-137

124) hsdM
( YP_005215545.1 )

Type I restriction-modification system methyltransferase

NC_016831
(Salmonella enterica RKS5078)

2e-137

125) I137_21565
( YP_008383593.1 )

DNA methyltransferase

NC_021984
(Salmonella enterica S06004)

2e-137

126) G432_08505
( YP_007616022.1 )

N-6 DNA methylase

NC_020561
(Sphingomonas sp. MM-1)

3e-137

127) O159_11410
( YP_008579804.1 )

methyltransferase

NC_022438
(Leifsonia xyli DSM 46306)

7e-137

128) Bcav_3915
( YP_002883918.1 )

N-6 DNA methylase

NC_012669
(Beutenbergia cavernae DSM 12333)

9e-137

129) Spica_2702
( YP_004699307.1 )

site-specific DNA-methyltransferase

NC_015732
(Treponema caldaria DSM 7334)

1e-136

130) ETAC_09220
( YP_007629325.1 )

type I restriction-modification system, M subunit

NC_020796
(Edwardsiella tarda C07-087)

1e-136

131) hsdM
( YP_004887393.1 )

type I restriction-modification system DNA methylase

NC_016052
(Tetragenococcus halophilus NBRC 12172)

2e-136

132) hsdM2
( YP_003623495.1 )

type I restriction-modification (R-M) system HsdM

NC_014145
(Thiomonas sp. 3As)

4e-136

133) Namu_1102
( YP_003200498.1 )

adenine-specific DNA-methyltransferase

NC_013235
(Nakamurella multipartita DSM 44233)

3e-135

134) hsdM1
( YP_003623198.1 )

type I restriction-modification (R-M) system HsdM

NC_014145
(Thiomonas sp. 3As)

4e-135

135) hsdM3
( YP_003626025.1 )

type I restriction-modification (R-M) system HsdM

NC_014145
(Thiomonas sp. 3As)

4e-135

136) KN400_0451
( YP_006889495.1 )

type I restriction-modification system DNA adenine N6-methyltransferase

NC_017454
(Geobacter sulfurreducens KN400)

3e-134

137) FNFX1_0289
( YP_005825197.1 )

hypothetical protein

NC_017450
(Francisella novicida Fx1)

4e-134

138) Cag_1120
( YP_379425.1 )

type I restriction-modification system specificity subunit

NC_007514
(Chlorobium chlorochromatii CaD3)

1e-133

139) MROS_1293
( YP_006527543.1 )

N-6 DNA methylase

NC_018178
(Melioribacter roseus P3M-2)

1e-133

140) EcE24377A_2909
( YP_001463944.1 )

N4/N6-methyltransferase

NC_009801
(Escherichia coli E24377A)

2e-133

141) NT01EI_1012
( YP_002932459.1 )

type I restriction-modification system, M subunit

NC_012779
(Edwardsiella ictaluri 93-146)

2e-133

142) FMG_1377
( YP_001692685.1 )

type I restriction-modification system DNA methylase

NC_010376
(Finegoldia magna ATCC 29328)

2e-133

143) PP1Y_AT2797
( YP_004533068.1 )

putative type I restriction enzyme

NC_015580
(Novosphingobium sp. PP1Y)

4e-133

144) Mpe_A0005
( YP_001019202.1 )

type I restriction-modification system, M subunit

NC_008825
(Methylibium petroleiphilum PM1)

6e-133

145) Nit79A3_0882
( YP_004694151.1 )

N-6 DNA methylase

NC_015731
(Nitrosomonas sp. Is79A3)

2e-132

146) HMPREF0389_01041
( YP_005055171.1 )

type I restriction-modification system, M subunit

NC_016630
(Filifactor alocis ATCC 35896)

2e-132

147) APECO78_16840
( YP_007382533.1 )

adenine-specific DNA-methyltransferase

NC_020163
(Escherichia coli APEC O78)

2e-132

148) CJA_3640
( YP_001984093.1 )

type I restriction-modification system specificity subunit

NC_010995
(Cellvibrio japonicus Ueda107)

3e-132

149) Arth_0988
( YP_830485.1 )

N-6 DNA methylase

NC_008541
(Arthrobacter sp. FB24)

3e-132

150) Franean1_3767
( YP_001508068.1 )

N-6 DNA methylase

NC_009921
(Frankia sp. EAN1.pec)

3e-132

151) CJJ81176_1539
( YP_001001194.1 )

type I restriction-modification system, M subunit

NC_008787
(Campylobacter jejuni 81-176)

3e-132

152) hsdM
( YP_005656822.1 )

putative type I restriction enzyme M protein

NC_017279
(Campylobacter jejuni IA3902)

3e-132

153) hsdM
( YP_002344925.1 )

type I restriction enzyme M protein

NC_002163
(Campylobacter jejuni NCTC 11168)

3e-132

154) hsdM
( YP_006633673.1 )

type I restriction enzyme M protein

NC_018521
(Campylobacter jejuni NCTC 11168-BN148)

3e-132

155) A911_07480
( YP_006858540.1 )

putative type I restriction enzyme M protein

NC_018709
(Campylobacter jejuni PT14)

3e-132

156) hsdM
( YP_008562902.1 )

putative type I restriction enzyme M protein

NC_022362
(jejuni jejuni 00-2425)

3e-132

157) hsdM
( YP_008541149.1 )

putative type I restriction enzyme M protein

NC_022352
(jejuni jejuni 00-2426)

3e-132

158) hsdM
( YP_008539465.1 )

putative type I restriction enzyme M protein

NC_022351
(jejuni jejuni 00-2538)

3e-132

159) hsdM
( YP_008542870.1 )

putative type I restriction enzyme M protein

NC_022353
(jejuni jejuni 00-2544)

3e-132

160) Rfer_4006
( YP_525235.1 )

N-6 DNA methylase

NC_007908
(Rhodoferax ferrireducens T118)

7e-132

161) Sros_7556
( YP_003342978.1 )

Site-specific DNA-methyltransferase

NC_013595
(Streptosporangium roseum DSM 43021)

8e-132

162) Sulba_2350
( YP_006405194.1 )

type I restriction-modification system methyltransferase subunit

NC_018002
(Sulfurospirillum barnesii SES-3)

1e-131

163) Metme_1963
( YP_004512875.1 )

adenine-specific DNA methyltransferase

NC_015572
(Methylomonas methanica MC09)

2e-131

164) NAL212_2263
( YP_004295248.1 )

adenine-specific DNA-methyltransferase

NC_015222
(Nitrosomonas sp. AL212)

2e-131

165) Cagg_3300
( YP_002464585.1 )

N-6 DNA methylase

NC_011831
(Chloroflexus aggregans DSM 9485)

2e-130

166) Sputcn32_2908
( YP_001184424.1 )

N-6 DNA methylase

NC_009438
(Shewanella putrefaciens CN-32)

3e-130

167) Cyan7425_3148
( YP_002483837.1 )

N-6 DNA methylase

NC_011884
(Cyanothece sp. PCC 7425)

4e-130

168) CAP2UW1_1873
( YP_003167100.1 )

N-6 DNA methylase

NC_013194
(Candidatus Accumulibacter phosphatis UW-1)

7e-130

169) hsdM
( NP_840472.1 )

hsdM; site-specific DNA-methyltransferase, type I modification

NC_004757
(Nitrosomonas europaea ATCC 19718)

2e-129

170) Isova_0872
( YP_004541550.1 )

adenine-specific DNA-methyltransferase

NC_015588
(Isoptericola variabilis 225)

2e-129

171) A458_03940
( YP_006456463.1 )

type I restriction-modification system, M subunit

NC_018028
(Pseudomonas stutzeri CCUG 29243)

4e-129

172) HCBAA847_2281
( YP_007602127.1 )

type I restriction-modification system

NC_020555
(Helicobacter cinaedi ATCC BAA-847)

3e-129

173) CDCE8392_2206
( YP_005134737.1 )

putative type I restriction/modification system DNA methylase

NC_016785
(Corynebacterium diphtheriae CDCE 8392)

4e-129

174) Psest_4048
( YP_007242148.1 )

type I restriction-modification system methyltransferase subunit

NC_019936
(Pseudomonas stutzeri RCH2)

4e-129

175) Oweho_0002
( YP_004987674.1 )

type I restriction-modification system methyltransferase subunit

NC_016599
(Owenweeksia hongkongensis DSM 17368)

5e-129

176) hsdM
( YP_004715768.1 )

type I restriction-modification system, M subunit

NC_015740
(Pseudomonas stutzeri ATCC 17588)

5e-129

177) BN117_0855
( YP_006894871.1 )

Site-specific DNA-methyltransferase, type I modification

NC_018828
(Bordetella parapertussis Bpp5)

4e-128

178) Bpro_1940
( YP_548769.1 )

N-6 DNA methylase

NC_007948
(Polaromonas sp. JS666)

5e-128

179) H650_18285
( YP_008109411.1 )

DNA methyltransferase

NC_021500
(Enterobacter sp. R4-368)

6e-128

180) Ser39006_0957
( YP_008521339.1 )

Site-specific DNA-methyltransferase (adenine-specific)

NC_022268
(Serratia sp. ATCC 39006)

8e-128

181) Pnap_4777
( YP_973928.1 )

N-6 DNA methylase

NC_008761
(Polaromonas naphthalenivorans CJ2)

1e-127

182) PCC21_032490
( YP_006647905.1 )

type I restriction-modification system, M subunit

NC_018525
(Pectobacterium carotovorum PCC21)

1e-127

183) Rfer_0032
( YP_521325.1 )

N-6 DNA methylase

NC_007908
(Rhodoferax ferrireducens T118)

1e-127

184) hsdM3
( YP_249266.1 )

type I restriction enzyme HindVIIP M protein

NC_007146
(Haemophilus influenzae 86-028NP)

2e-127

185) CFSAN002050_05885
( YP_008259123.1 )

DNA methyltransferase

NC_021818
(Salmonella enterica CFSAN002050)

2e-127

186) hsdM3
( YP_004135183.1 )

type i restriction enzyme hindviip m protein

NC_014920
(Haemophilus influenzae F3031)

4e-127

187) ESA_00614
( YP_001436734.1 )

hypothetical protein

NC_009778
(Cronobacter sakazakii ATCC BAA-894)

4e-127

188) PARA_15900
( YP_004823276.1 )

hypothetical protein

NC_015964
(Haemophilus parainfluenzae T3T1)

5e-127

189) Mvan_0034
( YP_950891.1 )

N-6 DNA methylase

NC_008726
(Mycobacterium vanbaalenii PYR-1)

1e-126

190) MARHY0353
( YP_005428278.1 )

type I restriction enzyme HindVIIP M protein

NC_017067
(Marinobacter hydrocarbonoclasticus ATCC 49840)

1e-126

191) CDBH8_2312
( YP_005161392.1 )

putative type I restriction/modification system DNA methylase

NC_016800
(Corynebacterium diphtheriae BH8)

6e-127

192) hsdM1
( YP_008544349.1 )

putative type I restriction enzyme HindVII

NC_022356
(Haemophilus influenzae KR494)

6e-127

193) hsdM
( YP_005446846.1 )

type I restriction-modification system modification subunit

NC_017080
(Phycisphaera mikurensis NBRC 102666)

6e-127

194) Shewana3_4240
( YP_863755.1 )

N-6 DNA methylase

NC_008573
(Shewanella sp. ANA-3)

6e-127

195) CGSHiGG_01525
( YP_001291768.1 )

putative type I restriction enzyme HindVIIP M protein

NC_009567
(Haemophilus influenzae PittGG)

7e-127

196) DIP2314
( NP_940616.1 )

type I restriction/modification system DNA methylase

NC_002935
(Corynebacterium diphtheriae NCTC13129)

7e-127

197) Nwat_1303
( YP_003760550.1 )

adenine-specific DNA-methyltransferase

NC_014315
(Nitrosococcus watsonii C-113)

8e-127

198) Achl_1096
( YP_002487178.1 )

N-6 DNA methylase

NC_011886
(Arthrobacter chlorophenolicus A6)

1e-126

199) Tola_1220
( YP_002892423.1 )

adenine-specific DNA-methyltransferase

NC_012691
(Tolumonas auensis DSM 9187)

1e-126

200) Desaf_3447
( YP_005053392.1 )

adenine-specific DNA-methyltransferase

NC_016629
(Desulfovibrio africanus Walvis Bay)

2e-126

201) PACID_07550
( YP_006979948.1 )

N-6 DNA methylase

NC_019395
(Propionibacterium acidipropionici ATCC 4875)

2e-126

202) hsdM
( NP_439439.2 )

type I modification enzyme

NC_000907
(Haemophilus influenzae Rd KW20)

3e-126

203) EcE24377A_0286
( YP_001461440.1 )

N4/N6-methyltransferase

NC_009801
(Escherichia coli E24377A)

3e-126

204) Maqu_3380
( YP_960638.1 )

N-6 DNA methylase

NC_008740
(Marinobacter aquaeolei VT8)

4e-126

205) AMIS_67070
( YP_005466443.1 )

putative restriction-modification system methyltransferase

NC_017093
(Actinoplanes missouriensis 431)

4e-126

206) CD241_2201
( YP_005126455.1 )

putative type I restriction/modification system DNA methylase

NC_016782
(Corynebacterium diphtheriae 241)

4e-126

207) CDHC01_2201
( YP_005136990.1 )

putative type I restriction/modification system DNA methylase

NC_016786
(Corynebacterium diphtheriae HC01)

4e-126

208) hsdM1
( YP_007415995.1 )

type I restriction-modification system, methyltransferase subunit

NC_020230
(Corynebacterium urealyticum DSM 7111)

6e-126

209) CDC7B_2290
( YP_005163729.1 )

putative type I restriction/modification system DNA methylase

NC_016801
(Corynebacterium diphtheriae C7 (beta))

6e-126

210) CYCME_0988
( YP_008373680.1 )

Type I restriction-modification system methyltransferase subunit

NC_021917
(Cycloclasticus zancles 7-ME)

6e-126

211) CD31A_2338
( YP_005159030.1 )

putative type I restriction/modification system DNA methylase

NC_016799
(Corynebacterium diphtheriae 31A)

7e-126

212) BN4_12245
( YP_007494631.1 )

putative type I restriction enzyme HindVIIP M protein

NC_020409
(Desulfovibrio piezophilus C1TLV30)

1e-125

213) EpC_05870
( YP_002647619.1 )

type I restriction modification DNA modification domain-containing protein

NC_012214
(Erwinia pyrifoliae Ep1/96)

2e-125

214) CDHC04_2221
( YP_005141528.1 )

putative type I restriction/modification system DNA methylase

NC_016788
(Corynebacterium diphtheriae HC04)

9e-126

215) hsdM1
( YP_001799541.1 )

type I restriction-modification system, methyltransferase subunit

NC_010545
(Corynebacterium urealyticum DSM 7109)

3e-125

216) SHJG_6168
( YP_006247308.1 )

N-6 DNA methylase

NC_017765
(Streptomyces hygroscopicus 5008)

2e-124

217) SHJGH_5930
( YP_007694927.1 )

N-6 DNA methylase

NC_020895
(Streptomyces hygroscopicus TL01)

2e-124

218) hsdM
( YP_007265483.1 )

Putative type I restriction/modification system DNA methylase HsdM (M protein) (DNA methyltransferase)

NC_019951
(Mycobacterium canettii CIPT 140070010)

3e-124

219) hsdM
( NP_790920.1 )

type I restriction-modification system, M subunit

NC_004578
(Pseudomonas syringae DC3000)

9e-124

220) Sbal223_4473
( YP_002364294.1 )

N-6 DNA methylase

NC_011668
(Shewanella baltica OS223)

2e-123

221) Acav_4677
( YP_004237123.1 )

adenine-specific DNA-methyltransferase

NC_015138
(Acidovorax avenae ATCC 19860)

3e-123

222) hsdM
( YP_004724410.1 )

type I restriction/modification system DNA methylase HSDM

NC_015758
(Mycobacterium africanum GM041182)

3e-123

223) hsdM
( NP_856423.1 )

type I restriction/modification system DNA methylase HsdM

NC_002945
(Mycobacterium bovis AF2122/97)

3e-123

224) hsdM
( YP_978858.1 )

type I restriction/modification system DNA methylase hsdM

NC_008769
(Mycobacterium bovis BCG Pasteur 1173P2)

3e-123

225) K60_028500
( YP_007431908.1 )

type I restriction system adenine methylase

NC_020245
(Mycobacterium bovis Korea 1168P)

3e-123

226) hsdM
( YP_005172222.1 )

putative type I restriction/modification system DNA methylase

NC_016804
(Mycobacterium bovis Mexico)

3e-123

227) hsdM
( YP_002645815.1 )

type I restriction/modification system DNA methylase

NC_012207
(Mycobacterium bovis Tokyo 172)

3e-123

228) hsdM
( YP_004746209.1 )

putative type I restriction/modification system DNA methylase HSDM

NC_015848
(Mycobacterium canettii CIPT 140010059)

3e-123

229) hsdM
( YP_007261502.1 )

Putative type I restriction/modification system DNA methylase HsdM (M protein) (DNA methyltransferase)

NC_019950
(Mycobacterium canettii CIPT 140060008)

3e-123

230) hsdM
( YP_007288701.1 )

Putative type I restriction/modification system DNA methylase HsdM (M protein) (DNA methyltransferase)

NC_019965
(Mycobacterium canettii CIPT 140070008)

3e-123

231) MT7199_2789
( YP_007352526.1 )

putative TYPE I RESTRICTION/MODIFICATION SYSTEM DNA METHYLASE HSDM (M protein) (DNA METHYLTRANSFERASE)

NC_020089
(Mycobacterium tuberculosis 7199-99)

3e-123

232) J112_14765
( YP_007855764.1 )

type I restriction/modification system DNAmethylase

NC_021054
(Mycobacterium tuberculosis Beijing/NITR203)

3e-123

233) J113_19130
( YP_007962631.1 )

type I restriction/modification system DNAmethylase

NC_021193
(Mycobacterium tuberculosis CAS/NITR204)

3e-123

234) CCDC5180_2499
( YP_005910331.1 )

type I restriction system adenine methylase

NC_017522
(Mycobacterium tuberculosis CCDC5180)

3e-123

235) hsdM
( NP_337331.1 )

type I restriction system adenine methylase

NC_002755
(Mycobacterium tuberculosis CDC1551)

3e-123

236) M943_14240
( YP_008226851.1 )

type I restriction endonuclease subunit M

NC_021740
(Mycobacterium tuberculosis EAI5)

3e-123

237) J114_14705
( YP_007966672.1 )

type I restriction/modification system DNAmethylase

NC_021194
(Mycobacterium tuberculosis EAI5/NITR206)

3e-123

238) hsdM
( YP_007611478.1 )

type I restriction/modification system DNAmethylase

NC_020559
(Mycobacterium tuberculosis Erdman (ATCC35801))

3e-123

239) TBHG_02688
( YP_002159713.1 )

type I restriction/modification system DNA methylase HsdM

NC_022350
(Mycobacterium tuberculosis Haarlem)

3e-123

240) MRGA423_17110
( YP_005923909.1 )

type I restriction/modification system DNA methylase HSDM

NC_017528
(Mycobacterium tuberculosis RGTB423)

3e-123

241) hsdM
( YP_005801362.1 )

type I restriction-modification system DNA methylase

NC_017390
(Erwinia pyrifoliae DSM 12163)

3e-123

242) hsdM
( YP_002474980.1 )

Type I restriction-modification system methyltransferase subunit

NC_011852
(Haemophilus parasuis SH0165)

4e-123

243) hsdM
( YP_007269443.1 )

Putative type I restriction/modification system DNA methylase HsdM (M protein) (DNA methyltransferase)

NC_019952
(Mycobacterium canettii CIPT 140070017)

6e-123

244) PT7_2210
( YP_004417374.1 )

Type I restriction-modification system, M subunit

NC_015458
(Pusillimonas sp. T7-7)

1e-122

245) Plabr_4421
( YP_004272015.1 )

adenine-specific DNA-methyltransferase

NC_015174
(Planctomyces brasiliensis DSM 5305)

1e-122

246) hsdM
( YP_005917836.1 )

type I restriction/modification system DNA methylase HsdM

NC_017524
(Mycobacterium tuberculosis CTRI-2)

3e-122

247) TBFG_12769
( YP_001288698.1 )

type I restriction/modification system DNA methylase hsdM

NC_009565
(Mycobacterium tuberculosis F11)

3e-122

248) hsdM
( YP_001284121.1 )

type I restriction/modification system DNA methylase HsdM

NC_009525
(Mycobacterium tuberculosis H37Ra)

3e-122

249) hsdM
( NP_217272.1 )

Possible type I restriction/modification system DNA methylase HsdM (M protein) (DNA methyltransferase)

NC_000962
(Mycobacterium tuberculosis H37Rv)

3e-122

250) RVBD_2756c
( YP_006516201.1 )

type I restriction enzyme M protein

NC_018143
(Mycobacterium tuberculosis H37Rv)

3e-122

251) TBMG_01219
( YP_003031163.1 )

type I restriction/modification system DNA methylase hsdM

NC_012943
(Mycobacterium tuberculosis KZN 1435)

3e-122

252) TBSG_01229
( YP_005099697.1 )

type I restriction/modification system DNA methylase hsdM

NC_016768
(Mycobacterium tuberculosis KZN 4207)

3e-122

253) TBXG_001209
( YP_006472682.1 )

type I restriction/modification system DNA methylase hsdM

NC_018078
(Mycobacterium tuberculosis KZN 605)

3e-122

254) hsdM
( YP_005309017.1 )

hypothetical protein

NC_016934
(Mycobacterium tuberculosis UT205)

3e-122

255) VFMJ11_B0053
( YP_002157415.1 )

type I restriction-modification system, M subunit

NC_011185
(Vibrio fischeri MJ11)

6e-122

256) Desal_2735
( YP_002992328.1 )

site-specific DNA-methyltransferase (adenine-specific)

NC_012881
(Desulfovibrio salexigens DSM 2638)

1e-121

257) NT08PM_1864
( YP_006240729.1 )

type I restriction system adenine methylase

NC_017764
(Pasteurella multocida 3480)

2e-120

258) FNFX1_0641
( YP_005825549.1 )

hypothetical protein

NC_017450
(Francisella novicida Fx1)

6e-120

259) hsdM
( YP_007595115.1 )

type I restriction-modification system, DNA-methyltransferase subunit M

NC_020547
(Acinetobacter baumannii D1279779)

1e-119

260) Pedsa_1279
( YP_004273668.1 )

adenine-specific DNA-methyltransferase

NC_015177
(Pedobacter saltans DSM 12145)

2e-119

261) MM_0429
( NP_632453.1 )

type I restriction-modification system methylation subunit

NC_003901
(Methanosarcina mazei Go1)

4e-119

262) Mbur_0483
( YP_565216.1 )

N-6 DNA methylase

NC_007955
(Methanococcoides burtonii DSM 6242)

1e-118

263) hsdM
( NP_246476.1 )

hypothetical protein

NC_002663
(Pasteurella multocida Pm70)

9e-119

264) Aflv_2059
( YP_002316403.1 )

type I restriction-modification system methyltransferase subunit

NC_011567
(Anoxybacillus flavithermus WK1)

2e-118

265) GHH_c13080
( YP_007401596.1 )

putative type I restriction enzyme HindVIIP M protein

NC_020210
(Geobacillus sp. GHH01)

3e-118

266) I917_19320
( YP_007958764.1 )

type I restriction system adenine methylase

NC_021192
(Mycobacterium tuberculosis Haarlem/NITR202)

4e-118

267) EJP617_05140
( YP_005817082.1 )

Type I restriction modification DNA modification domain protein

NC_017445
(Erwinia sp. Ejp617)

5e-118

268) Fluta_2798
( YP_004345616.1 )

adenine-specific DNA methyltransferase

NC_015321
(Fluviicola taffensis DSM 16823)

6e-118

269) Metok_1382
( YP_004577125.1 )

adenine-specific DNA methyltransferase

NC_015636
(Methanothermococcus okinawensis IH1)

2e-117

270) hsdM
( YP_001850264.1 )

type I restriction/modification system DNA methylase HsdM

NC_010612
(Mycobacterium marinum M)

6e-117

271) D650_9870
( YP_007665764.1 )

N-6 DNA methylase

NC_020833
(Mannheimia haemolytica USDA-ARS-USMARC-183)

1e-116

272) Belba_2142
( YP_006407464.1 )

type I restriction-modification system methyltransferase subunit

NC_018010
(Belliella baltica DSM 15883)

8e-117

273) Geoth_2026
( YP_004588050.1 )

adenine-specific DNA-methyltransferase

NC_015660
(Geobacillus thermoglucosidasius C56-YS93)

2e-116

274) GY4MC1_1947
( YP_003989308.1 )

adenine-specific DNA-methyltransferase

NC_014650
(Geobacillus sp. Y4.1MC1)

3e-116

275) RBAM_007140
( YP_001420330.1 )

type I restriction-modification system methyltransferase subunit like protein

NC_009725
(Bacillus amyloliquefaciens FZB42)

4e-116

276) hsdM
( YP_007368520.1 )

type I restriction/modification system DNA methylase HsdM

NC_020133
(Mycobacterium liflandii 128FXT)

4e-116

277) Fphi_0190
( YP_001676909.1 )

type I restriction-modification system methyltransferase subunit-like protein

NC_010336
(Francisella philomiragia ATCC 25017)

1e-115

278) RTO_30870
( YP_007787990.1 )

Type I restriction-modification system methyltransferase subunit

NC_021015
([Ruminococcus] torques L2-14)

1e-115

279) Belba_0101
( YP_006405527.1 )

type I restriction-modification system methyltransferase subunit

NC_018010
(Belliella baltica DSM 15883)

2e-115

280) M493_07015
( REF_PRJNA208285:M493 )

DNA methyltransferase

NC_022080
(Geobacillus sp. JF8)

2e-115

281) LBU_1048
( YP_005852257.1 )

HsdM

NC_017469
(Lactobacillus delbrueckii 2038)

2e-115

282) EUS_01180
( YP_007774377.1 )

Type I restriction-modification system methyltransferase subunit

NC_021011
(Eubacterium siraeum 70/3)

4e-115

283) F382_03170
( YP_008233516.1 )

type I restriction endonuclease HindVIIP subunit M

NC_021743
(Mannheimia haemolytica D153)

4e-115

284) Dacet_2667
( YP_003505380.1 )

N-6 DNA methylase

NC_013943
(Denitrovibrio acetiphilus DSM 12809)

6e-115

285) hsdM1
( YP_008007745.1 )

N-terminal truncated type I restriction/modification system DNA methylase HsdM

NC_021251
(Mycobacterium tuberculosis CCDC5079)

1e-114

286) GK1380
( YP_147233.1 )

type I restriction-modification system DNA methylase

NC_006510
(Geobacillus kaustophilus HTA426)

1e-114

287) ASU2_03895
( YP_006817156.1 )

putative type I modification enzyme

NC_018690
(Actinobacillus suis H91-0380)

2e-114

288) UMN179_00643
( YP_004419574.1 )

N-6 DNA Methylase

NC_015460
(Gallibacterium anatis UMN179)

9e-114

289) J450_02370
( YP_008219536.1 )

type I restriction endonuclease HindVIIP subunit M

NC_021738
(Mannheimia haemolytica D171)

2e-113

290) hsdM3
( YP_001053340.1 )

type I modification enzyme

NC_009053
(Actinobacillus pleuropneumoniae L20)

1e-112

291) ZPR_3435
( YP_003585947.1 )

type I restriction-modification system methyltransferase subunit like protein

NC_014041
(Zunongwangia profunda SMA-87)

2e-112

292) CCDC5079_2529
( YP_005913952.1 )

type I restriction system adenine methylase

NC_017523
(Mycobacterium tuberculosis CCDC5079)

3e-112

293) infB
( YP_001290624.1 )

translation initiation factor IF-2

NC_009566
(Haemophilus influenzae PittEE)

2e-111

294) J451_03480
( YP_008222092.1 )

type I restriction endonuclease HindVIIP subunit M

NC_021739
(Mannheimia haemolytica D174)

1e-105

295) D648_15970
( YP_007669109.1 )

type I restriction enzyme HindVIIP M protein

NC_020834
(Mannheimia haemolytica USDA-ARS-USMARC-185)

1e-105

296) N220_08960
( YP_008339233.1 )

type I restriction endonuclease HindVIIP subunit M

NC_021883
(Mannheimia haemolytica USMARC_2286)

1e-105

297) K756_04795
( YP_008123720.1 )

Type I restriction-modification system methyltransferase subunit

NC_021521
(Haemophilus parasuis ZJ0906)

6e-105

298) P700755_000890
( YP_006866619.1 )

type I restriction-modification system, DNA-methyltransferase subunit HdsM

NC_018721
(Psychroflexus torquis ATCC 700755)

4e-104

299) MHH_c24290
( YP_007884223.1 )

type I restriction enzyme M protein

NC_021082
(Mannheimia haemolytica M42548)

2e-101

300) WQG_11890
( YP_007548257.1 )

type I restriction enzyme HindVIIP M protein

NC_020515
(Bibersteinia trehalosi USDA-ARS-USMARC-192)

2e-101

301) ZPR_4675
( YP_003587171.1 )

type I restriction-modification system DNA methylase

NC_014041
(Zunongwangia profunda SMA-87)

2e-100

302) TOPB45_0145
( YP_004627189.1 )

adenine-specific DNA methyltransferase

NC_015682
(Thermodesulfobacterium geofontis OPB45)

3e-100

303) TREPR_2283
( YP_004530786.1 )

type I restriction-modification system, M subunit

NC_015578
(Treponema primitia ZAS-2)

1e-99

304) RB2501_07110
( YP_003194429.1 )

type I restriction-modification system DNA methylase

NC_013222
(Robiginitalea biformata HTCC2501)

7e-100

305) SRU_1098
( YP_445227.1 )

type i restriction enzyme hindviip m protein

NC_007677
(Salinibacter ruber DSM 13855)

3e-99

306) HsdM2
( YP_004736100.1 )

type I restriction enzyme ZgaDII, M subunit

NC_015844
(Zobellia galactanivorans DsiJT)

1e-98

307) CDHC03_2198
( YP_005139241.1 )

putative type I restriction/modification system DNA methylase

NC_016787
(Corynebacterium diphtheriae HC03)

3e-94

308) MJECL42
( NP_044168.1 )

type I restriction system protein M

NC_001732
(Methanocaldococcus jannaschii DSM 2661)

7e-90

309) TherJR_0899
( YP_003639667.1 )

adenine-specific DNA-methyltransferase

NC_014152
(Thermincola potens JR)

4e-87

310) Mbar_A2666
( YP_306152.1 )

type I restriction-modification system specificity subunit

NC_007355
(Methanosarcina barkeri Fusaro)

2e-85

311) Slip_1127
( YP_003702469.1 )

adenine-specific DNA-methyltransferase

NC_014220
(Syntrophothermus lipocalidus DSM 12680)

5e-85

312) Metvu_0940
( YP_003247280.1 )

adenine-specific DNA-methyltransferase

NC_013407
(Methanocaldococcus vulcanius M7)

3e-84

313) Tmz1t_0004
( YP_002353703.1 )

adenine-specific DNA-methyltransferase

NC_011662
(Thauera sp. MZ1T)

8e-84

314) Deipr_1486
( YP_004256242.1 )

Site-specific DNA-methyltransferase (adenine-specific)

NC_015161
(Deinococcus proteolyticus MRP)

3e-81

• Sequence Alignments

1) M013TW_0063 in NC_016928


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  807 bits (3053),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 504/504 (100%), Positives = 504/504 (100%), Gaps = 0/504 (0%)

Query  1    MATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEED  60
            MATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEED
Sbjct  4    MATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEED  63

Query  61   QDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPA  120
            QDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPA
Sbjct  64   QDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPA  123

Query  121  LDKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL  180
            LDKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL
Sbjct  124  LDKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL  183

Query  181  VEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAI  240
            VEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAI
Sbjct  184  VEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAI  243

Query  241  RGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNA  300
            RGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNA
Sbjct  244  RGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNA  303

Query  301  NYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYS  360
            NYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYS
Sbjct  304  NYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYS  363

Query  361  TQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAW  420
            TQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAW
Sbjct  364  TQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAW  423

Query  421  RGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELS  480
            RGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELS
Sbjct  424  RGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELS  483

Query  481  EQFAKSKELEDQIRKSLEGLGYGV  504
            EQFAKSKELEDQIRKSLEGLGYGV
Sbjct  484  EQFAKSKELEDQIRKSLEGLGYGV  507

2) hsdM in NC_022442


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  807 bits (3053),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 504/504 (100%), Positives = 504/504 (100%), Gaps = 0/504 (0%)

Query  1    MATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEED  60
            MATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEED
Sbjct  4    MATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEED  63

Query  61   QDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPA  120
            QDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPA
Sbjct  64   QDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPA  123

Query  121  LDKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL  180
            LDKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL
Sbjct  124  LDKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL  183

Query  181  VEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAI  240
            VEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAI
Sbjct  184  VEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAI  243

Query  241  RGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNA  300
            RGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNA
Sbjct  244  RGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNA  303

Query  301  NYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYS  360
            NYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYS
Sbjct  304  NYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYS  363

Query  361  TQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAW  420
            TQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAW
Sbjct  364  TQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAW  423

Query  421  RGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELS  480
            RGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELS
Sbjct  424  RGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELS  483

Query  481  EQFAKSKELEDQIRKSLEGLGYGV  504
            EQFAKSKELEDQIRKSLEGLGYGV
Sbjct  484  EQFAKSKELEDQIRKSLEGLGYGV  507

3) hsdM in NC_007168


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  793 bits (3000),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 494/504 (99%), Positives = 499/504 (99%), Gaps = 0/504 (0%)

Query  1    MATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYKELKQDPYADEED  60
            MATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKY ELKQDPYADEED
Sbjct  4    MATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEED  63

Query  61   QDEYLAENIFWVPKEARWQYINDNAKKPEIGQLIDKAMIAIEKENESLKGVLPKEYARPA  120
            QDEYLAENIFWVPKEARWQYINDNAKKPEIGQ+IDKAMIAIE+ENESLKGVLPKEYARPA
Sbjct  64   QDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPA  123

Query  121  LDKEKLGDIIDLFTFKLGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL  180
            LDKEKLGDIIDLFTFK+GDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL
Sbjct  124  LDKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL  183

Query  181  VEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAI  240
            VEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAI
Sbjct  184  VEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAI  243

Query  241  RGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGVPPKGNA  300
            RGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFG+PPKGNA
Sbjct  244  RGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNA  303

Query  301  NYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYS  360
            NYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYS
Sbjct  304  NYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYS  363

Query  361  TQIPVCLWFISNNKGQNGKKERKNEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHSW  420
            TQIPVCLWFISNNKGQNGKKER NEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYH+W
Sbjct  364  TQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAW  423

Query  421  RGTNDKYYEDIAGFCKVVNLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMKRITSELS  480
            RGTNDK YEDIAGFCKV NLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKM RITSELS
Sbjct  424  RGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELS  483

Query  481  EQFAKSKELEDQIRKSLEGLGYGV  504
            EQFAKSKELEDQIRKSLEGLGYGV
Sbjct  484  EQFAKSKELEDQIRKSLEGLGYGV  507

4) hsdM in NC_017349


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  732 bits (2770),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 448/504 (89%), Positives = 491/504 (98%), Gaps = 0/504 (0%)

Query  1    MATIGFEEKLWQAADKLRGSMDAAEYKNVALGIIFLKYVSDSFEEKYEELLNdeyadeed  60
            MATIGFEEKLWQAADKLRGSMDAAEYKNVALG+IFLKYVSDSFEEKYEEL +D YADEED
Sbjct  4    MATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEED  63

Query  61   kdeylaeNIFWVPKESRWQYINDNSKKPEIGQIIDKAMIAIERENESLKGVLPKDYARPA  120
            +DEYLAENIFWVPKE+RWQYINDN+KKPEIGQIIDKAMIAIE ENESLKGVLPK+YARPA
Sbjct  64   QDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPA  123

Query  121  LDKEKLGDIIDLFTFKVGDSESKKQDVLGRVYEYFIAKFASAEGKNAGEFYTPASIVKLL  180
            LDKEKLGDIIDLFTFKVGD+ES+KQDVLGRVYEYFIAKFASAEGKNAGEFYTP+SIVKLL
Sbjct  124  LDKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL  183

Query  181  VEMVEPYEGRIYDPCCGSGGMFVQSERFVERHQGRLDNIAVYGQESNPTTWKLAKMNLAI  240
            VEM+EPY GRIYDPCCGSGGMFVQSERFVE+HQGRLD+IA+YGQESNPTTWKLAKMNLAI
Sbjct  184  VEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAI  243

Query  241  RGIDNDLGDHHADTFHNDLHKDLKADFILANPPFNASDWGREKLLDDYRWKFGIPPKGNA  300
            RGIDNDLG+++ADTFHNDLHK+LKAD+ILANPPFNASDWG+E+LLDDYRW+FGIPPKGNA
Sbjct  244  RGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNA  303

Query  301  NYAWIEHMISKLAPSGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYS  360
            NYAWIEHMISKLAP+GTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYS
Sbjct  304  NYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYS  363

Query  361  TQIPVCLWFVTKNKAKNGKNERRGEVLFIDARNIGSMVSRTLKEFSDDEIKDIANVYHSW  420
            TQIPVCLWF+++NK++NGK+ER  E+LFIDAR+IG MVSRTLKEFSD++I+ +A+ YH+W
Sbjct  364  TQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAW  423

Query  421  RGTNNNQYEDKAGFCKVAKTEEIKNNEYILTPGRYVGLAEVEEDSEPFEQKMERITADLS  480
            RGTN++ YED AGFCKVA+ EE+KNNEYILTPGRYVGLA+VEED EPFEQKMERIT++LS
Sbjct  424  RGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELS  483

Query  481  EQFAKSKELEDQIRKSLEGLGYGV  504
            EQFAKSKELEDQIRKSLEGLGYGV
Sbjct  484  EQFAKSKELEDQIRKSLEGLGYGV  507

5) hsdM in NC_017338


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  729 bits (2759),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 446/504 (89%), Positives = 490/504 (98%), Gaps = 0/504 (0%)

Query  1    MASIGFEEKLWQAADKLRGSMDAAEYKNVALGIIFLKYVSDSFEEKYEELLNdeyadeed  60
            MA+IGFEEKLWQAADKLRGSMDAAEYKNVALG+IFLKYVSDSFEEKYEEL +D YADEED
Sbjct  4    MATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEED  63

Query  61   kdeylaeNIFWVPKESRWQYINDNSKKPEIGQIIDKAMIAIERENESLKGVLPKDYARPA  120
            +DEYLAENIFWVPKE+RWQYINDN+KKPEIGQIIDKAMIAIE ENESLKGVLPK+YARPA
Sbjct  64   QDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPA  123

Query  121  LDKEKLGDIIDLFTFKVGDSESKKQDVLGRVYEYFIAKFASAEGKNAGEFYTPASIVKLL  180
            LDKEKLGDIIDLFTFKVGD+ES+KQDVLGRVYEYFIAKFASAEGKNAGEFYTP+SIVKLL
Sbjct  124  LDKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL  183

Query  181  VEMVEPYEGRIYDPCCGSGGMFVQSERFVERHQGRLDNIAVYGQESNPTTWKLAKMNLAI  240
            VEM+EPY GRIYDPCCGSGGMFVQSERFVE+HQGRLD+IA+YGQESNPTTWKLAKMNLAI
Sbjct  184  VEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAI  243

Query  241  RGIDNDLGDHHADTFHNDLHKDLKADFILANPPFNASDWGREKLLDDYRWKFGIPPKGNA  300
            RGIDNDLG+++ADTFHNDLHK+LKAD+ILANPPFNASDWG+E+LLDDYRW+FGIPPKGNA
Sbjct  244  RGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNA  303

Query  301  NYAWIEHMISKLAPSGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYS  360
            NYAWIEHMISKLAP+GTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYS
Sbjct  304  NYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYS  363

Query  361  TQIPVCLWFVTKNKAKNGKNERRGEVLFIDARNIGSMVSRTLKEVSDDEIKDIANVYHSW  420
            TQIPVCLWF+++NK++NGK+ER  E+LFIDAR+IG MVSRTLKE SD++I+ +A+ YH+W
Sbjct  364  TQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAW  423

Query  421  RGTNNNQYEDKAGFCKVAKTEEIKNNEYILTPGRYVGLAEVEEDSEPFEQKMERITADLS  480
            RGTN++ YED AGFCKVA+ EE+KNNEYILTPGRYVGLA+VEED EPFEQKMERIT++LS
Sbjct  424  RGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELS  483

Query  481  EQFAKSKELEDQIRKSLEGLGYGV  504
            EQFAKSKELEDQIRKSLEGLGYGV
Sbjct  484  EQFAKSKELEDQIRKSLEGLGYGV  507

6) SAEMRSA15_00450 in NC_017763


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  727 bits (2751),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 443/504 (88%), Positives = 491/504 (98%), Gaps = 0/504 (0%)

Query  1    MATIGFEEKLWQAADKLRGSMDAAEYKNVALGIIFLKYVSDSFEEKYEELLNdeyadeed  60
            MATIGFEEKLWQAADKLRGSMDAAEYKNVALG+IFLKYVSDSFEEKYEEL +D YADEED
Sbjct  4    MATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEED  63

Query  61   kdeylaeNIFWVPKESRWQYINDNSKKPEIGQIIDKAMIAIERENESLKGVLPKDYARPA  120
            +DEYLAENIFWVPKE+RWQYINDN+KKPEIGQIIDKAMIAIE ENESLKGVLPK+YARPA
Sbjct  64   QDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPA  123

Query  121  LDKEKLGDIIDLFTFKVGDSESKKQDILGRVYEYFIAKFASAEGKNAGEFYTPASIVKLL  180
            LDKEKLGDIIDLFTFKVGD+ES+KQD+LGRVYEYFIAKFASAEGKNAGEFYTP+SIVKLL
Sbjct  124  LDKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL  183

Query  181  VEMIEPYQGRIYDPCCGSGGMFVQSEHFIERHQGRIDDIAVYGQESNPTTWKLAKMNLAI  240
            VEMIEPY+GRIYDPCCGSGGMFVQSE+F+E+HQGR+DDIA+YGQESNPTTWKLAKMNLAI
Sbjct  184  VEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAI  243

Query  241  RGIDNNLGDHHADTFHNDLHKDLKADFILANPPFNASDWGREKLQDDYRWKFGIPPKGNA  300
            RGIDN+LG+++ADTFHNDLHK+LKAD+ILANPPFNASDWG+E+L DDYRW+FGIPPKGNA
Sbjct  244  RGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNA  303

Query  301  NYAWIEHMISKLAPSGTAGFVLANGSMSTSGKDELEIRKNLIEQDMVECIVTLPGQLFYS  360
            NYAWIEHMISKLAP+GTAGFVLANGSMSTSGKDELEIRKNLIEQD+VECIVTLPGQLFYS
Sbjct  304  NYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYS  363

Query  361  TQIPVCLWFMTKNKAKNGKNERRGEVLFIDARNIGSMVSRTLKEFSDDEIKDIANVYHSW  420
            TQIPVCLWF+++NK++NGK+ER  E+LFIDAR+IG MVSRTLKEFSD++I+ +A+ YH+W
Sbjct  364  TQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAW  423

Query  421  RGTNNNQYEDKAGFCKVAKTEEIKNNEYILTPGRYVGLAEVEEDSEPFEQKMERITADLS  480
            RGTN++ YED AGFCKVA+ EE+KNNEYILTPGRYVGLA+VEED EPFEQKMERIT++LS
Sbjct  424  RGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELS  483

Query  481  EQFAKSKELEDQIRKSLEGLGYGV  504
            EQFAKSKELEDQIRKSLEGLGYGV
Sbjct  484  EQFAKSKELEDQIRKSLEGLGYGV  507

7) Clocl_3625 in NC_016627


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  595 bits (2246),  Expect = 2e-171, Method: Compositional matrix adjust.
 Identities = 331/506 (66%), Positives = 420/506 (84%), Gaps = 8/506 (1%)

Query  1    MATVNLGFENNLWEMADKLRGNIEASEYKHVVLGLIFLKYISDAFEERYNELVAEGEGFE  60
            +    +GFE++LW+ ADKLRG+++A+EYK+V LGLIFLKY+SD+FEE+Y+EL  +  + E
Sbjct  2    LLMATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADE  61

Query  61   EDIDAYTEVNVFYVPKEARWDYIKANAKQPTIGQIIDEAMIAIEKENASLKGVLPKNYAR  120
            ED D Y   N+F VPKEARW+YI+ NAK+P IGQIID AMIAIE+EN SLKGVLPK+YAR
Sbjct  62   EDQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYAR  121

Query  121  PEIDKTKLGELIDLFSFKVGDKEARAQDVLGRVYEYFLGKFGSSEG----EFYTPPSIVK  176
            P +DK KLG++IDLF+FKVGD E+R QDVLGRVYEYF++KF+S+EG    EFYTP+SIVK
Sbjct  122  PALDKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVK  181

Query  177  LLVEMIEPYKGRVYDPCCGSGGMFVQSQRFVEEHSGRKDDIHIFGQEYTATTWRLCKMNL  236
            LLVEMIEPYKGR+YDPCCGSGGMFVQS+RFVE H GR DDI I+GQE  +TTW+L KMNL
Sbjct  182  LLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNL  241

Query  237  AIRGIDGNLGERDADTFSNDLHKMLKADYILANPPFNIKDWGANRLVDDVRWKYGMPPAG  296
            AIRGID +LGER+ADTF NDLHK LKADYILANPPFN  DWG +RL+DD RW++G+PP G
Sbjct  242  AIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKG  301

Query  297  NANYAWIQHIISKLSPNGVAGFVMANGAMSTNTTSEAEIRKNIIEDKLVDCIITLPPNLF  356
            NANYAWI+H+ISKL+PNG AGFV+ANG+MST+   E EIRKN+IE+ LV+CI+TLP +LF
Sbjct  302  NANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLF  361

Query  357  YNVTIPACLWFLTRNKKSDG-RDRSNEILFIDARKMGTMIDRKHRELDYETEIKYIADTY  415
            Y+  IP CLWF++ NK  +G ++R NEILFIDAR +G M+ R  +E+  + +I+ +A+TY
Sbjct  362  YSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFS-DEDIQKVAQTY  420

Query  416  HRWK--KGEGYEDIKGFCKSATLDEVRSHEYILTPGRYVGIEEKADDGEPFDEKMTRLTG  473
            H W+  ++  YEDI GFCK A L+EV+++EYILTPGRYVG+ +  +D EPF++KM R+T+
Sbjct  421  HAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITS  480

Query  474  ELAEMFAKRKSLEDEIRKRLGAIGYD  499
            EL+E FAK K LED+IRK L ++GY+
Sbjct  481  ELSEQFAKSKELEDQIRKSLEGLGYG  506

8) HM1_3075 in NC_010337


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  591 bits (2231),  Expect = 3e-170, Method: Compositional matrix adjust.
 Identities = 322/489 (66%), Positives = 415/489 (85%), Gaps = 6/489 (1%)

Query  2    ADKLRGNIEASEYKHVVLGLIFLKYISDSFEEKYNELVAEGEGFEEDIDAYMEDNIFFVP  61
            ADKLRG+++A+EYK+V LGLIFLKY+SDSFEEKY+EL  +  + EED D Y+ +NIF VP
Sbjct  17   ADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDEYLAENIFWVP  76

Query  62   PEARWDYIKEQAKQPTIGQIIDDAMVAIEKNNPSLKGVLPKNYARPELDKTKLGELIDLF  121
             EARW+YI+++AK+P IGQIID AM+AIE++N SLKGVLPK+YARP LDK KLG++IDLF
Sbjct  77   KEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALDKEKLGDIIDLF  136

Query  122  SFKVGDKEAKAKDVLGRVYEYFLGKFGSSEG----EFYTPPSIVKLLVEMIEPYKGRIYD  177
            +FKVGD E++ +DVLGRVYEYF++KF+S+EG    EFYTP+SIVKLLVEMIEPYKGRIYD
Sbjct  137  TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYD  196

Query  178  PCCGSGGMFVQSQRFVEEHQGRRDDIHVYGQEYTATTWRLCKMNLSIRGIDANLGERDDD  237
            PCCGSGGMFVQS+RFVE HQGR DDI +YGQE  +TTW+L KMNL+IRGID +LGER+ D
Sbjct  197  PCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRGIDNDLGERNAD  256

Query  238  TFANDLHKSLRADYILANPPFNIKDWGANRLANDARWKYGLPPANNANYAWIQHIISKLS  297
            TF NDLHK+L+ADYILANPPFN  DWG +RL +D RW++G+PP  NANYAWI+H+ISKL+
Sbjct  257  TFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAWIEHMISKLA  316

Query  298  PSGVAGFVMANGSMLTNTSNESEIRKNIIEAKLVDCIVTMPSNLFYTVTIPVCLWFLSKN  357
            P+G AGFV+ANGSM T+  +E EIRKN+IE  LV+CIVT+P++LFY+  IPVCLWF+S+N
Sbjct  317  PNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNN  376

Query  358  KMPKGLRDRSDEILFIDARKMGYMEDRKHRVLSEEDIQRIAQTYRNWK--KGEGYEDVKG  415
            K  +G ++R +EILFIDAR +G M  R  + +S+EDIQ++AQTY+ W+  ++  YED+ G
Sbjct  377  KGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRGTNDKPYEDIAG  436

Query  416  FCKSATLAEVREHEYILTPGRYVGVEEVEADTEAFDEKMSRLTGELAEMFAKSRHLEEEI  475
            FCK A L EV+++EYILTPGRYVG+ +VE D E+F++KM R+T+EL+E FAKS++LE++I
Sbjct  437  FCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQI  496

Query  476  RRRLGAIGY  484
            R+ L ++GY
Sbjct  497  RKSLEGLGY  505

9) LRI_1103 in NC_021494


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  586 bits (2212),  Expect = 1e-168, Method: Compositional matrix adjust.
 Identities = 320/503 (64%), Positives = 417/503 (83%), Gaps = 2/503 (0%)

Query  8    LNIEDKLWKAADALRGSMDASEYRNVVLGLIFLKYASDSFDERRQELLKTEYPEDAEDPD  67
            + +E+KLW+AAD LRGSMDA+EY+NV LGLIFLKY SDSF+E+ +EL +  Y+++ ED D
Sbjct  7    IGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADE-EDQD  65

Query  68   MYLENNIFWVPQEARWSKIEHAAKTPQIGEVIDDAMTAIEKSNDSFRGILSKNYASPDLD  127
             YL +NIFWVP+EARW  I++ AK P+IG++ID AM AIE+ N+S++G+L+K+YA P LD
Sbjct  66   EYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALD  125

Query  128  KTRLGEVVDLISDIKVGTKESTDKDVLGRVYEYFLNEFASQEGKHGGEFYTPRSIVKILV  187
            K +LG+++DL++ +KVG  ES  +DVLGRVYEYF+  FAS EGK++GEFYTP SIVK+LV
Sbjct  126  KEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLV  184

Query  188  EMIEPYKGRIYDPCCGSGGMFVQSEEFVRHHQGELKDLHVFGEESNPTTWKLAKMNLAIR  247
            EMIEPYKGRIYDPCCGSGGMFVQSE FV  HQG L D+ ++G+ESNPTTWKLAKMNLAIR
Sbjct  185  EMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIR  244

Query  248  GIDSDLGPHQGDTFTNDLHKGVRFNYILANPPFNIKNWGGEKLQEDARWKYGVPPTGNAN  307
            GID+DLG +++DTF NDLHKG++ +YILANPPFN  +WG E+L +D RW++G+PP GNAN
Sbjct  245  GIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNAN  304

Query  308  YAWIEHIISKLAPDGKAGFVLANGALSTSNKEELAIRKAILEDDKIDAIVALPEKMFYST  367
            YAWIEH+ISKLAP+G AGFVLANG++STS K+EL IRK ++E+D ++ IV+LP ++FYST
Sbjct  305  YAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYST  364

Query  368  GIPVSLWFVDMNKESEDERSRKGETLFIDARNLGEMIDRTHRAFNDDDIKKVADTYHAYR  427
             IPV LWF+  NK  ++ + R  E LFIDAR++G+M+ RT + F+D+DI+KVA+TYHA R
Sbjct  365  QIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWR  424

Query  428  GTNDQEYKDVAGFCKVAKLDEIAKNDYVLTPGRYVGLAKQEDDGEPYEVKMKRLTSELKE  487
            GTND+ Y D+AGFCKVA+L+E+ +N+Y+LTPGRYVGLA  E+D EP+E KM R+TSEL E
Sbjct  425  GTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSE  484

Query  488  QFEESNKLQAQIKDVLKELGYEI  510
            QF  S+ L+ QI+  L  LGY +
Sbjct  485  QFAKSKELEDQIRKSLEGLGYGV  507

10) hsdM in NC_015697


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  586 bits (2214),  Expect = 7e-169, Method: Compositional matrix adjust.
 Identities = 313/503 (63%), Positives = 421/503 (84%), Gaps = 2/503 (0%)

Query  10   LSIEDKLWKTADALRGSMDASEYRNVVLGLIFLKYVSDSFETRHNELLKSDYPEDAEDPD  69
            +++E+KLW++AD LRGSMDA+EY+NV LGLIFLKYVSDSFE + +EL +  Y+++ ED D
Sbjct  7    IGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADE-EDQD  65

Query  70   MYLSENIFWVPKEARWELIQQSAKTPQIGEIIDSAMDAIEKSNDSLRGVLSKNYASPDLD  129
             YL+ENIFWVPKEARW+ I+++AK P+IG+IID AM AIE+ N+SL+GVL+K+YA P LD
Sbjct  66   EYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALD  125

Query  130  KARLGEVVDLISDISLGDKHAKQSDILGRVYEYFLNEFASQEGKKGGEFYTPRSIVRTLV  189
            K +LG+++DL++ + +GD ++++ D+LGRVYEYF+  FAS EGK++GEFYTP SIV+ LV
Sbjct  126  KEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLV  184

Query  190  EMIEPYKGRIYDPCCGSGGMFVQSDKFVQEHQGKIGDLSVYGEESNPTTWKLAKMNLAIR  249
            EMIEPYKGRIYDPCCGSGGMFVQS++FV+ HQG+++D+++YG+ESNPTTWKLAKMNLAIR
Sbjct  185  EMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIR  244

Query  250  GIDNNLGPHQGDTFTNDLHKGERFDFILANPPFNVKNWNGDKLREDARWQYGVPPVGNAN  309
            GIDN+LG +++DTF NDLHKG + D+ILANPPFN  +W  ++L +D RWQ+G+PP GNAN
Sbjct  245  GIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNAN  304

Query  310  YAWIEHIISKLAPDGKAGFVLANGALSTSTTAEHDIRKAILEDDKIDAIVALPDKMFYST  369
            YAWIEH+ISKLAP+G AGFVLANG++STS   E +IRK ++E+D ++ IV+LP+++FYST
Sbjct  305  YAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYST  364

Query  370  GIPVSLWFVDMNKESENERDRKGETLFIDARDLGEMIDRTHRAFSKEDIKKVADTYHAYR  429
             IPV LWF+  NK  +  ++R  E LFIDAR++G+M+ RT + FS EDI+KVA+TYHA R
Sbjct  365  QIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWR  424

Query  430  GTNDQEYKDVPGFCKVAKLDEIAKNDYVLTPGRYVGLAKQEDDGEPYEVKMARLTGELKK  489
            GTND+ Y D++GFCKVA+L+E+ +N+Y+LTPGRYVGLA  E+D EP+E KM R+T+EL  
Sbjct  425  GTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSE  484

Query  490  QFEESNKLQAEIKDVLKELGYEI  512
            QF  S+ L+ +I+  L  LGY +
Sbjct  485  QFAKSKELEDQIRKSLEGLGYGV  507

11) Dacet_2555 in NC_013943


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  584 bits (2204),  Expect = 5e-168, Method: Compositional matrix adjust.
 Identities = 312/513 (61%), Positives = 415/513 (81%), Gaps = 11/513 (2%)

Query  8    ANIGFEDKLWQTADKLRGNMDASEYKHVVLGLIFLKYISDSFQAKYDELLATQETDYTDP  67
            A IGFE+KLWQ+ADKLRG+MDA+EYK+V LGLIFLKY+SDSF+ KY+EL   ++  Y+D 
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL---KQDPYADE  61

Query  68   EDRDEYMSDNVFWVPAEARWESLIAKAKTPEIGKVLDDAMIAIEKENKTLKNILPKTYSR  127
            ED+DEY+++N+FWVP EARW+ +  +AK PEIG+++D AMIAIE+EN +LK +LPK Y+R
Sbjct  62   EDQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYAR  121

Query  128  PEIDKSRLGELLDIIGSIPLIDKAQSSKDLLGRVYEYFIGMFASKEGRSGGEFYTPQSVV  187
            P +DK +LG+++D++ ++ + D     +D+LGRVYEYFI+ FAS EG+++GEFYTP S+V
Sbjct  122  PALDKEKLGDIIDLF-TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIV  180

Query  188  QLLVEMIEPYKGRVYDPCCGSGGMFVQSEKFAEEHGGRLRDISVYGQEYNATTWRLAKMN  247
            +LLVEMIEPYKGR+YDPCCGSGGMFVQSE+F E H GRL DI++YGQE N+TTW+LAKMN
Sbjct  181  KLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMN  240

Query  248  LAIRGIEANLGAEWADTFTNDLHKDLKSDFILANPPFNMSDWGGNKLKNDVRWKYGTPPD  307
            LAIRGI+ +LG   ADTF NDLHK+LK+D+ILANPPFN SDWG ++L +D RW++G PP 
Sbjct  241  LAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPK  300

Query  308  NNANYAWIQHFIHHLAPNGVAGFVLANGSMSSNTSGEGEIRKNIIEADLVDCMIALPGQL  367
             NANYAWI+H I  LAPNG AGFVLANGSMS++  +E EIRKN+IE DLV+C+++LPGQL
Sbjct  301  GNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQL  360

Query  368  FYTTQIPVCLWFLARNKGKNGHRERKGETLFIDARKMGRLEDRVHRVLVPEDIQKIASTY  427
            FY+TQIPVCLWF++ NKG+NG +ER  E LFIDAR +G++  R  + +  EDIQK+A TY
Sbjct  361  FYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTY  420

Query  428  HAWRSNPDVIASEGKQSYEDVAGFCKSVTLDTIKEHDYVLTPGRYVGAEEVEDDGEPFDE  487
            HAWR+  D       ++YED+AGFCK   L+ +K+++Y+LTPGRYVG  +VE+D EPF++
Sbjct  421  HAWRGTND-------KPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQ  473

Query  488  KMKRLSTQLYSQMTEGEKLDAVIKENLAKLGYG  520
            KM R++++L  Q + +  L+  I+ +L  LGYG
Sbjct  474  KMERITSELSEQFAKSKELEDQIRKSLEGLGYG  506

12) Lreu_0869 in NC_009513


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  582 bits (2197),  Expect = 2e-167, Method: Compositional matrix adjust.
 Identities = 318/503 (64%), Positives = 417/503 (83%), Gaps = 2/503 (0%)

Query  8    LNIEDKLWKAADALRGSMDASEYRNVVLGLIFLKYASDSFEERRQELLKTEYPEDAEDPD  67
            + +E+KLW+AAD LRGSMDA+EY+NV LGLIFLKY SDSFEE+ +EL +  Y+++ ED D
Sbjct  7    IGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADE-EDQD  65

Query  68   MYLENNIFWVPQEARWAKIEHAAKTPQIGEVIDDAMTAIEKSNDSFRGILSKNYASPDLD  127
             YL +NIFWVP+EARW  I++ AK P+IG++ID AM AIE+ N+S++G+L+K+YA P LD
Sbjct  66   EYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALD  125

Query  128  KTRLGEVVDLISDIKVGTKESTDKDVLGRVYEYFLNEFASQEGKHGGEFYTPRSIVKILV  187
            K +LG+++DL++ +KVG  ES  +DVLGRVYEYF+  FAS EGK++GEFYTP SIVK+LV
Sbjct  126  KEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLV  184

Query  188  EMIEPYKGRIYDPCCGSGGMFVQSEEFVRHHQGELKDLHVFGEESNPTTWKLAKMNLAIR  247
            EMIEPYKGRIYDPCCGSGGMFVQSE FV  HQG L D+ ++G+ESNPTTWKLAKMNLAIR
Sbjct  185  EMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIR  244

Query  248  GIDSDLGPHQGDTFTNDLHKGVRFNYILANPPFNIKNWGGEKLQEDARWKYGVPPTGNAN  307
            GID+DLG +++DTF NDLHKG++ +YILANPPFN  +WG E+L +D RW++G+PP GNAN
Sbjct  245  GIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNAN  304

Query  308  YAWIEHIISKLAPDGKAGFVLANGALSTSNKEEFAIRKAILEDDKIDAIVALPEKMFYST  367
            YAWIEH+ISKLAP+G AGFVLANG++STS K+E+ IRK ++E+D ++ IV+LP ++FYST
Sbjct  305  YAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYST  364

Query  368  GIPVSLWFVDMNKESEDERSRKGETLFIDARNLGEMIDRTHRAFNDDDIKKVADTYHAYR  427
             IPV LWF+  NK  ++ + R  E LFIDAR++G+M+ RT + F+D+DI+KVA+TYHA R
Sbjct  365  QIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWR  424

Query  428  GTNDQEYKDVAGFCKIAKLDEIAKNDYVLTPGRYVGLAKQEDDGESYEVKMKRLTSELKE  487
            GTND+ Y D+AGFCK+A+L+E+ +N+Y+LTPGRYVGLA  E+D E++E KM R+TSEL E
Sbjct  425  GTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSE  484

Query  488  QFEESNKLQAQIKDVLKELGYEI  510
            QF  S+ L+ QI+  L  LGY +
Sbjct  485  QFAKSKELEDQIRKSLEGLGYGV  507

13) LAR_0816 in NC_010609


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  582 bits (2197),  Expect = 2e-167, Method: Compositional matrix adjust.
 Identities = 318/503 (64%), Positives = 417/503 (83%), Gaps = 2/503 (0%)

Query  8    LNIEDKLWKAADALRGSMDASEYRNVVLGLIFLKYASDSFEERRQELLKTEYPEDAEDPD  67
            + +E+KLW+AAD LRGSMDA+EY+NV LGLIFLKY SDSFEE+ +EL +  Y+++ ED D
Sbjct  7    IGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADE-EDQD  65

Query  68   MYLENNIFWVPQEARWAKIEHAAKTPQIGEVIDDAMTAIEKSNDSFRGILSKNYASPDLD  127
             YL +NIFWVP+EARW  I++ AK P+IG++ID AM AIE+ N+S++G+L+K+YA P LD
Sbjct  66   EYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALD  125

Query  128  KTRLGEVVDLISDIKVGTKESTDKDVLGRVYEYFLNEFASQEGKHGGEFYTPRSIVKILV  187
            K +LG+++DL++ +KVG  ES  +DVLGRVYEYF+  FAS EGK++GEFYTP SIVK+LV
Sbjct  126  KEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLV  184

Query  188  EMIEPYKGRIYDPCCGSGGMFVQSEEFVRHHQGELKDLHVFGEESNPTTWKLAKMNLAIR  247
            EMIEPYKGRIYDPCCGSGGMFVQSE FV  HQG L D+ ++G+ESNPTTWKLAKMNLAIR
Sbjct  185  EMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIR  244

Query  248  GIDSDLGPHQGDTFTNDLHKGVRFNYILANPPFNIKNWGGEKLQEDARWKYGVPPTGNAN  307
            GID+DLG +++DTF NDLHKG++ +YILANPPFN  +WG E+L +D RW++G+PP GNAN
Sbjct  245  GIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNAN  304

Query  308  YAWIEHIISKLAPDGKAGFVLANGALSTSNKEEFAIRKAILEDDKIDAIVALPEKMFYST  367
            YAWIEH+ISKLAP+G AGFVLANG++STS K+E+ IRK ++E+D ++ IV+LP ++FYST
Sbjct  305  YAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYST  364

Query  368  GIPVSLWFVDMNKESEDERSRKGETLFIDARNLGEMIDRTHRAFNDDDIKKVADTYHAYR  427
             IPV LWF+  NK  ++ + R  E LFIDAR++G+M+ RT + F+D+DI+KVA+TYHA R
Sbjct  365  QIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWR  424

Query  428  GTNDQEYKDVAGFCKIAKLDEIAKNDYVLTPGRYVGLAKQEDDGESYEVKMKRLTSELKE  487
            GTND+ Y D+AGFCK+A+L+E+ +N+Y+LTPGRYVGLA  E+D E++E KM R+TSEL E
Sbjct  425  GTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSE  484

Query  488  QFEESNKLQAQIKDVLKELGYEI  510
            QF  S+ L+ QI+  L  LGY +
Sbjct  485  QFAKSKELEDQIRKSLEGLGYGV  507

14) Cyan7822_0692 in NC_014501


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  575 bits (2170),  Expect = 2e-165, Method: Compositional matrix adjust.
 Identities = 320/512 (63%), Positives = 422/512 (83%), Gaps = 9/512 (1%)

Query  15   NTVKLEDKLWKAADKLRGHLDAAEYKHVVLGLIFLKYISDAFGELYDKLSTDEYADPEDK  74
             T+ +E+KLW+AADKLRG +DAAEYK+V LGLIFLKY+SD+F E Y+ L  D YAD ED+
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ  64

Query  75   DEYTAEHIFWVPVEARWSHLQAKAKTPDIGKFVDEAMEAIEKENPSLKGVLPKDYGKPAL  134
            DEY AE+IFWVP EARW  ++ +AK P+IG+++D AM AIE+EN SLKGVLPK+Y++PAL
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  135  DKRLLGELIDLIGTIGLGDAQNRSQDILGRVYEYFLGQFASAEGKKGGQFYTPRCVVELL  194
            DK  LG++IDL+ T+ +GD+++R QD+LGRVYEYF+++FASAEGK++G+FYTP  +V LL
Sbjct  125  DKEKLGDIIDLF-TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL  183

Query  195  VDMLEPYKGRVYDPCCGSGGMFVQSEKFVEAHGGKIGDISIYGQESNPTTWKLCKMNLAI  254
            V+M+EPYKGR+YDPCCGSGGMFVQSE+FVE H G+++DI+IYGQESNPTTWKL KMNLAI
Sbjct  184  VEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAI  243

Query  255  RGIDGNLGAKNADSFRNDLHKELKADYILANPPFNVSDWGGQHLREDSRWIYGTPPVGNA  314
            RGID +LG +NAD+F+NDLHK LKADYILANPPFN SDWG ++L +D RW +G PP GNA
Sbjct  244  RGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNA  303

Query  315  NYAWIQQIITHLAPNGIAGFVLANGSMSSNQSGEGEIRKALVEADLVDCMVALPGQLFYN  374
            NYAWI+++I+ LAPNG AGFVLANGSMS++  +E EIRK L+E DLV+C+V+LPGQLFY+
Sbjct  304  NYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYS  363

Query  375  TQIPACLWFLTRNKGQSPLTLLNKGGMRQRKGETLFIDARKLGVLIDRVHRELTSEEITR  434
            TQIP CLWF++ NKGQ+        G ++R  E LFIDAR +G ++ R  +E++ E+I +
Sbjct  364  TQIPVCLWFISNNKGQN--------GKKERENEILFIDAREIGHMVSRTLKEFSDEDIQK  415

Query  435  IAETYHNWRGSGKGEYEDVPGFCKSAALEDIRGHGYVLTPGRYVGAeevddddepfeeKM  494
            +A+TYH WRG+    YED++GFCK A LE+++ + Y+LTPGRYVG  +V++D+EPFE+KM
Sbjct  416  VAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKM  475

Query  495  ERLTKLLEEQFSESARLENEICQNLREFGYEL  526
            ER+T  L EQF+ S  LE++I ++L  +GY +
Sbjct  476  ERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

15) Mhun_2789 in NC_007796


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  575 bits (2172),  Expect = 2e-165, Method: Compositional matrix adjust.
 Identities = 324/519 (63%), Positives = 414/519 (80%), Gaps = 17/519 (3%)

Query  14   NLGFEATLWAAADKLRNNMDAAEYKHVVLGLIFLKYLSDAFEEKHSSLEQAYSDPQSTWY  73
             +GFE  LW AADKLR +MDAAEYK+V LGLIFLKY+SD+FEEK   L Q          
Sbjct  6    TIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQD---------  56

Query  74   IAEPEVRYGVIEDPDEYRSENIFWIPKEARWSYIQQNAKRPEIGKIVDDAMYAIERDNAV  133
                   Y+  ED DEY +ENIFW+PKEARW YI++NAK+PEIG+I+D AM AIE +N  
Sbjct  57   ------PYADEEDQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENES  110

Query  134  LKNILPKEYARPGLDKEKLGELIDLIGTLNLSDSENRSKDIIGRVYEYFLSEFASAEGKN  193
            LK +LPKEYARP+LDKEKLG++IDL+ T++++D+E+R +D++GRVYEYF++ FASAEGKN
Sbjct  111  LKGVLPKEYARPALDKEKLGDIIDLF-TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKN  169

Query  194  GGQFYTPRCVVQTLVAMISPFKGRVYDPCCGSGGMFVQSEKFVEAHGGRIGDISIYGQES  253
            +G+FYTP  +V+ LV MI P+KGR+YDPCCGSGGMFVQSE+FVE H GR++DI+IYGQES
Sbjct  170  AGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQES  229

Query  254  NPTTWKLAKMNLAIRGIDHDLGAEHADSFRRDLHATLKADYILANPPFNMKDWGGENLKD  313
            NPTTWKLAKMNLAIRGID+DLG  +AD+F+ DLH  LKADYILANPPFN  DWG E L D
Sbjct  230  NPTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLD  289

Query  314  DVRWRYGIPPTGNANYAWIQHFIHHLSPSGIAGFVLANGSMSSNQSGEGEIRKNLLEADL  373
            D RW++GIPP GNANYAWI+H I  L+P+G AGFVLANGSMS++  +E EIRKNL+E DL
Sbjct  290  DYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDL  349

Query  374  VDCMVALPGQLFYSTQIPACLWFVArnrsngrfrdrrgEVLFIDARKMGVMRDRTHRELT  433
            V+C+V+LPGQLFYSTQIP CLWF++ N+++   ++R  E+LFIDAR +G M  RT +E++
Sbjct  350  VECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFS  409

Query  434  DEDIERIAGTYHAWRGDASAGEYEDVPGFCASATLEEIAKHGHVLTPGRYVGAEDAEDDG  493
            DEDI+++A TYHAWRG ++   YED++GFC  A LEE+ ++  +LTPGRYVG  D E+D 
Sbjct  410  DEDIQKVAQTYHAWRG-TNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDE  468

Query  494  EPFAEKMTRLTKQLSEQMEDGARLDEEIKKNLGGLGYTI  532
            EPF +KM R+T +LSEQ   +  L+++I+K+L GLGY +
Sbjct  469  EPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

16) Cylst_5223 in NC_019757


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  573 bits (2164),  Expect = 7e-165, Method: Compositional matrix adjust.
 Identities = 328/504 (66%), Positives = 429/504 (86%), Gaps = 1/504 (0%)

Query  37   SKLGFEEKLWQTADKLRGHLDAAEYKHVVLGLIFLKYISDAFNELYEKLSQDEYAEPEDR  96
            + +GFEEKLWQ+ADKLRG +DAAEYK+V LGLIFLKY+SD+F+E YE L QD YA+ ED+
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ  64

Query  97   DEYSAENIFYVPKVARWLHFQSHAKNPLIGQLIDEGMDAIEKENASLKGVLPKEYGKPAL  156
            DEY AENIF VPK ARW  ++ +AK+P IGQ+ID +M AIE+EN SLKGVLPKEY++PAL
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  157  DKRLLGELIDLIGTIGLGDAESRKNDVLGRVYEYFLGQFANAEGKKGGQFYTPPAVVKVL  216
            DK  LG++IDL+ T+ +GD+ESRK+DVLGRVYEYF+++FA+AEGK++G+FYTP+++VK+L
Sbjct  125  DKEKLGDIIDLF-TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL  183

Query  217  VEMLEPYKGRVYDPCCGSGGMFVQSEKFIKAHEGKIGDISIYGQESNPTTWKLCKINLAI  276
            VEM+EPYKGR+YDPCCGSGGMFVQSE+F+  H+G+++DI+IYGQESNPTTWKL K+NLAI
Sbjct  184  VEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAI  243

Query  277  RGIDGNLGAKNADSFRNDLHKDLKADYILANPPFNMSDWGGEGLREDGRWIYGTPSAGNA  336
            RGID +LG +NAD+F+NDLHK+LKADYILANPPFN SDWG E L +D RW +G P+ GNA
Sbjct  244  RGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNA  303

Query  337  NYAWIQHIISHLAPHGYAGFVLANGSMSSNQSGEGEIRKALIDADLVDCMVALPGQLFYN  396
            NYAWI+H+IS LAP+G AGFVLANGSMS++  +E EIRK LI+ DLV+C+V+LPGQLFY+
Sbjct  304  NYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYS  363

Query  397  TQIPACLWFLTRNKSGGKFRKRRGETLFIDGRKLGVLIDRVHRDLTEEEIKRIAQTYHNW  456
            TQIP CLWF++ NK+    + R  E LFID+R +G ++ R  +++++E+I+++AQTYH W
Sbjct  364  TQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAW  423

Query  457  RGTGKEKYIDVPGFCKGASFEEIQGHGYVLTPGRYVGAeeveeddepfeekmeRLTQKLE  516
            RGT    Y D++GFCK A++EE++ + Y+LTPGRYVG  +VEED+EPFE+KMER+T  L 
Sbjct  424  RGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELS  483

Query  517  EQFRKSADLERKIKQNLRGLGYGI  540
            EQF KS +LE +I+++L GLGYG+
Sbjct  484  EQFAKSKELEDQIRKSLEGLGYGV  507

17) LFE_0347 in NC_017094


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  572 bits (2160),  Expect = 1e-164, Method: Compositional matrix adjust.
 Identities = 328/512 (65%), Positives = 417/512 (82%), Gaps = 9/512 (1%)

Query  12   SPLGLETKLWQAADKLRNNMDAAEYKHVVLGLLFLKYVSDSFEEHHAKLTSEISQGANPE  71
            + +G+E KLWQAADKLR +MDAAEYK+V LGL+FLKYVSDSFEE    L  +    A+ E
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPY--ADEE  62

Query  72   DPDEYRADNVFWVPKEARWSVLQSNAKRPEIGKVIDDAMVAIERDNKSLKAVLPKDFARP  131
            D DEY A+N+FWVPKEARW  ++ NAK+PEIG++ID AM+AIE +N SLK+VLPK++ARP
Sbjct  63   DQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARP  122

Query  132  GLDKQRLGELIDLVGTIGLGDKEHRSRDMLGRVYEYFLSRFASAEGKKGGQFYTPRSVVR  191
            +LDK++LG++IDL  T+ +GD E R +D+LGRVYEYF+++FASAEGK++G+FYTP S+V+
Sbjct  123  ALDKEKLGDIIDLF-TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVK  181

Query  192  VLVEMLAPYKGRVYDPCCGSGGMFVQSEKFIEVHGGRIGDISIYGQESNHTTWKLAAMNL  251
            +LVEM+ PYKGR+YDPCCGSGGMFVQSE+F+E H GR++DI+IYGQESN TTWKLA MNL
Sbjct  182  LLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNL  241

Query  252  AIRGIAANLGKENADSFHRDLHPDLKADYILANPPFNSSDWGGDRLREDKRWVYGVPPGG  311
            AIRGI  +LG  NAD+FH DLH +LKADYILANPPFN+SDWG +RL +D RW +G+PP G
Sbjct  242  AIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKG  301

Query  312  NANFGWVQHFISHLAPNGVAGFVLANGSLSSNQSGEGEIRKNIVEADVVDCIVAMPGQLF  371
            NAN++W++H IS LAPNG AGFVLANGS+S++  +E EIRKN++E D+V+CIV++PGQLF
Sbjct  302  NANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLF  361

Query  372  YSTQIPVSLWFVSRNKKNGKGQEGKPLRDRSGEILFIDARKLGFMADRTHRDLSDEDIAK  431
            YSTQIPV LWF+S    N KGQ+GK  ++R  EILFIDAR +G M  RT +++SDEDI K
Sbjct  362  YSTQIPVCLWFIS----NNKGQNGK--KERENEILFIDAREIGHMVSRTLKEFSDEDIQK  415

Query  432  IAGTYHHWRGDGAGQYENIPGFCKKATLEEVRTHGHVLTPGRYVGAeevegdgepfeeKM  491
            +A TYH WRG     YE+I+GFCK A LEEV+ +  +LTPGRYVG  +VE D EPFE+KM
Sbjct  416  VAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKM  475

Query  492  KRLTAQLDEQFKESARLEAEIRSNLSKLGYGL  523
             R+T++L EQF  S  LE +IR +L  LGYG+
Sbjct  476  ERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

18) hsdM2 in NC_016894


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  569 bits (2149),  Expect = 1e-163, Method: Compositional matrix adjust.
 Identities = 323/503 (65%), Positives = 420/503 (84%), Gaps = 5/503 (0%)

Query  5    GNIGFEETLWKAADKLRGSMDASEYKHVVLGLIFLKYISDKFETKYNELVTEGEGFEEDR  64
            + IGFEE LW+AADKLRGSMDA+EYK+V LGLIFLKY+SD FE KY+EL  +  + EED+
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ  64

Query  65   DEYASENIFWVPKEARWTFIMDNAKDIKIGQYIDDAMILIEKENTSLKGVLDKRYARPEI  124
            DEY +ENIFWVPKEARW +I DNAK   IGQ ID AMI IE+EN SLKGVL K YARP +
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  125  DKRRLGELIDLISTIKLHDSGEK--DLLGRVYEYFLGQFASVEGKGGGEFYTPTSIVKTL  182
            DK +LG++IDL+ T+K+ D+  +  D+LGRVYEYF+++FAS EGK +GEFYTP+SIVK L
Sbjct  125  DKEKLGDIIDLF-TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL  183

Query  183  VEMIEPYQGRVYDPCCGSGGMFVQSEKFVEDHQGKIENLSIYGQEMNSTTWKLCKMNLAI  242
            VEMIEPY+GR+YDPCCGSGGMFVQSE+FVE HQG++++++IYGQE N+TTWKL KMNLAI
Sbjct  184  VEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAI  243

Query  243  RGLDANLGSHHDDTFHNDLHKTLKADFILANPPFNISDWGGGHLTDDVRWKFGMPPTGNA  302
            RG+D +LG ++ DTFHNDLHK LKAD+ILANPPFN SDWG  +L DD RW+FG+PP GNA
Sbjct  244  RGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNA  303

Query  303  NYAWLQHMVYHLAPNGSAGIVLANGSLSSNTSNEGEIRKNLLEGDLVDAIVALPDKLFYS  362
            NYAW++HM+  LAPNG+AG+VLANGS+S++  +E EIRKNL+E DLV+ IV+LP++LFYS
Sbjct  304  NYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYS  363

Query  363  TGIPVSLWILNRNKATNPQFRSRYHEVLFIDARQLGEMIDRRHKVLKDDDVATIAAAYHA  422
            T IPV LW+++ NK+ N + + R +E+LFIDAR++G+M+ R  K + D+D+  +A +YHA
Sbjct  364  TQIPVCLWFISNNKGQNGK-KERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHA  422

Query  423  WRNLDG-AYEDVKGFCKAAKLAEIREHEYVLTPGRYVGIEDAIDDGIPFEEKMENMTAEL  481
            WR  ++ +YED+ GFCK A+L E++++EY+LTPGRYVG+ D  +D  PFE+KME +T+EL
Sbjct  423  WRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSEL  482

Query  482  AELFAKSRHLEDEIRKNLGGVGY  504
            +E FAKS++LED+IRK+L G+GY
Sbjct  483  SEQFAKSKELEDQIRKSLEGLGY  505

19) hsdM in NC_015634


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  568 bits (2144),  Expect = 2e-163, Method: Compositional matrix adjust.
 Identities = 328/508 (65%), Positives = 425/508 (84%), Gaps = 5/508 (0%)

Query  1    MMETAKIGFEETLWKSADKLRGSMDASEYKHVVLGLIFLKYISDKFEMKYNelveegegf  60
            M+  A IGFEE LW++ADKLRGSMDA+EYK+V LGLIFLKY+SD FE KY+EL ++  + 
Sbjct  1    MLLMATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYAD  60

Query  61   eedrdeYTAENIFWVPKQSRWSFIKDRAKDPKIGQYIDEAMIEIEKENPSLRGVLDKRYA  120
            EED+DEY AENIFWVPK++RW +I+D AK P IGQ ID AMI IE+EN SL+GVL K YA
Sbjct  61   EEDQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYA  120

Query  121  RPEIDKRRLGELIDLISTIKLHSKQEK--DLLGRVYEYFLGKFASAEGKGGGEFYTPQSV  178
            RP +DK +LG++IDL+ T+K+   + +  D+LGRVYEYF++KFASAEGK +GEFYTP S+
Sbjct  121  RPALDKEKLGDIIDLF-TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSI  179

Query  179  VKTLVEMTEPYEGRIYDPCCGSGGMFVQSEKFVERHQGKIDNLSIYGQELNSTTWKLCKM  238
            VK LVEM EPY GRIYDPCCGSGGMFVQSE+FVE+HQG++D+++IYGQE N+TTWKL KM
Sbjct  180  VKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKM  239

Query  239  NLAIRGIEGNIGEHHADTFHNDLHKTLKADFILANPPFNVSDWGGNELVDDVRWKFGTPP  298
            NLAIRGI+ ++GE++ADTFHNDLHK LKAD+ILANPPFN SDWG + L+DD RW+FG PP
Sbjct  240  NLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPP  299

Query  299  ASNANYAWLQHMIYHLSPNGAAGIVLANGSLSSNTSNEGEIRKNILEADLVDAIVALPDK  358
             +NANYAW++HMI  L+PNG+AG+VLANGS+S++  +E EIRKN++E DLV+ IV+LP++
Sbjct  300  KGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQ  359

Query  359  LFYSTGIPVSLWILNRNKKNHPKYRSREHEILFIDARNLGKMVDRRLRELTEEDIQKIAG  418
            LFYST IPV LW+++ NK ++ K + RE+EILFIDAR++G MV R L+E+++EDIQK+A 
Sbjct  360  LFYSTQIPVCLWFISNNKGQNGK-KERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQ  418

Query  419  TYRNWRKPDGK-YEDIKGFCKSVTLEDVRQNDYVLTPGRYVGISDVEDDGIPFEEKMETL  477
            TY+ WR  ++K YEDI GFCK   LE+V++N+Y+LTPGRYVG++DVE+D  PFE+KME +
Sbjct  419  TYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERI  478

Query  478  TVELRGLFDKSHQLEEEIKKKLGGIGYD  505
            T EL   F KS +LE++I+K L G+GY+
Sbjct  479  TSELSEQFAKSKELEDQIRKSLEGLGYG  506

20) Rhom172_1470 in NC_015966


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  567 bits (2140),  Expect = 5e-163, Method: Compositional matrix adjust.
 Identities = 321/509 (64%), Positives = 413/509 (82%), Gaps = 9/509 (1%)

Query  9    ANLGFENKLWEMADKLRGHMDAAEYKHVVLGLIFLKYISDAFEEKYQELKAKQDTEFTDP  68
            A +GFE+KLW+ ADKLRG MDAAEYK+V LGLIFLKY+SD+FEEKY+ELK   +  ++D 
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELK---QDPYADE  61

Query  69   EDRDEYLAANVFWVPPEARWEKIQAAAPQPTIGQVIDEAMAAIERENPSLKGVLPKDYAR  128
            ED+DEYLA N+FWVP EARW+ I+  A +P IGQ+ID AM AIE EN SLKGVLPK+YAR
Sbjct  62   EDQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYAR  121

Query  129  PTLDKVRLGELVKLVGDINLKAQEYSVRDPLGRVYEYFLGKFAEKEGKRGGEYYTPQCVV  188
            P+LDK +LG+++ L   +++   E   +D LGRVYEYF++KFA  EGK +GE+YTP  +V
Sbjct  122  PALDKEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIV  180

Query  189  QLLVEMIEPYRGRVYDPCCGSGGMFVQSEKFVEAHGGKLGDIAIYGQESNPTTWRLCKMN  248
            +LLVEMIEPY+GR+YDPCCGSGGMFVQSE+FVE H G+L+DIAIYGQESNPTTW+L KMN
Sbjct  181  KLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMN  240

Query  249  LAIRRIDADLGPHHADTFHNDLHKDLKADYILANPPFNMSDWGGERLTDDPRWKYGVPPA  308
            LAIR ID DLG ++ADTFHNDLHK+LKADYILANPPFN SDWG ERL DD RW++G+PP 
Sbjct  241  LAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPK  300

Query  309  SNANYAWIQHFIYHLAPNGIAGFVMANGSLSTSTKAEFEIRKGIIEDDLVDCIVALPGQL  368
            +NANYAWI+H I  LAPNG AGFV+ANGS+STS K E+EIRK +IE+DLV+CIV+LPGQL
Sbjct  301  GNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQL  360

Query  369  FYTTQIPVSLWFLTRNKKADPKRGYRDRTGETLFIDARRMGRLVDRVHRELTQEEIRQIA  428
            FY+TQIPV LWF++ NK  + K   ++R  E LFIDAR +G++V R  +E+++E+I+++A
Sbjct  361  FYSTQIPVCLWFISNNKGQNGK---KERENEILFIDAREIGHMVSRTLKEFSDEDIQKVA  417

Query  429  DVYHAWK--KGEGYEDRPGWWKSATIEDIRRHDYVLTPGRYVGVEEQEDDGVPFEEKMAE  486
            + YHAW+  ++  YED +G  K A +E+++ ++Y+LTPGRYVG+ + E+D  PFE+KM  
Sbjct  418  QTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMER  477

Query  487  LTATLYEQFEEAHRLEAEIKKNLEVLGYG  515
            +T+ L EQF  +  LE +I+K+LE LGYG
Sbjct  478  ITSELSEQFAKSKELEDQIRKSLEGLGYG  506

21) AFE_2793 in NC_011761


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  565 bits (2135),  Expect = 1e-162, Method: Compositional matrix adjust.
 Identities = 310/513 (61%), Positives = 411/513 (81%), Gaps = 11/513 (2%)

Query  14   TSQSLESKLWATADKLRGHLDAADYKHVVLGLIFLKYISDRFAQRHEEIIREEAGTYA-A  72
            ++ ++E KLW +ADKLRG +DAA+YK+V LGLIFLKY+SD F ++ EE+ ++    YA  
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQD---PYADE  61

Query  73   EDRDEYTAEGVFWVPASSRWAVVQTAAKQPDIGKRIDGAMTDIERENPHLKNILPKGYAR  132
            ED+DEY AE +FWVP  +RW  ++  AK+P+IG+ ID AM  IE EN  LK +LPK YAR
Sbjct  62   EDQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYAR  121

Query  133  PTLDQRRLGELVDLIGTIGLGTAEHQARDTLGRVYEYFLGRFASAEGKRGGEFYTPASVV  192
            P+LD+ +LG+++DL+ T+ +G +E + +D LGRVYEYF+++FASAEGK +GEFYTP+S+V
Sbjct  122  PALDKEKLGDIIDLF-TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIV  180

Query  193  RTLVTMLAPYKGRIYDPCCGSGGMFVQSEKFIEAHGGKVGDISVYGEESNPNTWKLALMN  252
            + LV M+ PYKGRIYDPCCGSGGMFVQSE+F+E H G+++DI++YG+ESNP TWKLA MN
Sbjct  181  KLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMN  240

Query  253  LAIRGIEADLGPEAADTFHKDLHPDLRADYILANPPFNISDWGGDLLRDDKRWQYGIPPT  312
            LAIRGI+ DLG   ADTFH+DLH +L+ADYILANPPFN SDWG + L DD RWQ+GIPP 
Sbjct  241  LAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPK  300

Query  313  GNANFAWVQHMVHHLAPYGIAGFVLANGSMSSNTSGEGEIRKNLIEADLVDCMVAMPGQL  372
            GNAN+AW++HM+  LAP G AGFVLANGSMS++  +E EIRKNLIE DLV+C+V++PGQL
Sbjct  301  GNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQL  360

Query  373  FYSTQIPVCLWFLAKNRDDGRGMTGKELFERTGEVLFIDARNMGFMADRTHRELTDEDIQ  432
            FYSTQIPVCLWF+++N    +G  GK   ER  E+LFIDAR++G M  RT +E++DEDIQ
Sbjct  361  FYSTQIPVCLWFISNN----KGQNGKK--ERENEILFIDAREIGHMVSRTLKEFSDEDIQ  414

Query  433  KIADTYHNWRGDGDGEYADIPGFCKAASLDDIRKNGHVLTPGRYVGAAAKDDDGEPFEEK  492
            K+A+TYH WRG  D  Y DI+GFCK A+L+++++N  +LTPGRYVG A  ++D EPFE+K
Sbjct  415  KVAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQK  474

Query  493  MDRLTKELSAQLAEGRRLEDEMLKNFRVLGYEL  525
            M+R+T ELS Q+A ++ LED++ K++  LGY +
Sbjct  475  MERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

22) Lferr_2418 in NC_011206


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  565 bits (2135),  Expect = 1e-162, Method: Compositional matrix adjust.
 Identities = 310/513 (61%), Positives = 411/513 (81%), Gaps = 11/513 (2%)

Query  14   TSQSLESKLWATADKLRGHLDAADYKHVVLGLIFLKYISDRFAQRHEEIIREEAGTYA-A  72
            ++ ++E KLW +ADKLRG +DAA+YK+V LGLIFLKY+SD F ++ EE+ ++    YA  
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQD---PYADE  61

Query  73   EDRDEYTAEGVFWVPASSRWAVVQTAAKQPDIGKRIDGAMTDIERENPHLKNILPKGYAR  132
            ED+DEY AE +FWVP  +RW  ++  AK+P+IG+ ID AM  IE EN  LK +LPK YAR
Sbjct  62   EDQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYAR  121

Query  133  PTLDQRRLGELVDLIGTIGLGTAEHQARDTLGRVYEYFLGRFASAEGKRGGEFYTPASVV  192
            P+LD+ +LG+++DL+ T+ +G +E + +D LGRVYEYF+++FASAEGK +GEFYTP+S+V
Sbjct  122  PALDKEKLGDIIDLF-TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIV  180

Query  193  RTLVTMLAPYKGRIYDPCCGSGGMFVQSEKFIEAHGGKVGDISVYGEESNPNTWKLALMN  252
            + LV M+ PYKGRIYDPCCGSGGMFVQSE+F+E H G+++DI++YG+ESNP TWKLA MN
Sbjct  181  KLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMN  240

Query  253  LAIRGIEADLGPEAADTFHKDLHPDLRADYILANPPFNISDWGGDLLRDDKRWQYGIPPT  312
            LAIRGI+ DLG   ADTFH+DLH +L+ADYILANPPFN SDWG + L DD RWQ+GIPP 
Sbjct  241  LAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPK  300

Query  313  GNANFAWVQHMVHHLAPYGIAGFVLANGSMSSNTSGEGEIRKNLIEADLVDCMVAMPGQL  372
            GNAN+AW++HM+  LAP G AGFVLANGSMS++  +E EIRKNLIE DLV+C+V++PGQL
Sbjct  301  GNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQL  360

Query  373  FYSTQIPVCLWFLAKNRDDGRGMTGKELFERTGEVLFIDARNMGFMADRTHRELTDEDIQ  432
            FYSTQIPVCLWF+++N    +G  GK   ER  E+LFIDAR++G M  RT +E++DEDIQ
Sbjct  361  FYSTQIPVCLWFISNN----KGQNGKK--ERENEILFIDAREIGHMVSRTLKEFSDEDIQ  414

Query  433  KIADTYHNWRGDGDGEYADIPGFCKAASLDDIRKNGHVLTPGRYVGAAAKDDDGEPFEEK  492
            K+A+TYH WRG  D  Y DI+GFCK A+L+++++N  +LTPGRYVG A  ++D EPFE+K
Sbjct  415  KVAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQK  474

Query  493  MDRLTKELSAQLAEGRRLEDEMLKNFRVLGYEL  525
            M+R+T ELS Q+A ++ LED++ K++  LGY +
Sbjct  475  MERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

23) Ngar_c29130 in NC_018719


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  564 bits (2129),  Expect = 4e-162, Method: Compositional matrix adjust.
 Identities = 319/505 (64%), Positives = 427/505 (85%), Gaps = 3/505 (0%)

Query  9    GDLGFEQKLWLAADKLRSNMDAAEYKHVVLGLIFLKYISDAFNEVYEEVKKDKTSDPEDI  68
            + +GFE+KLW AADKLR++MDAAEYK+V LGLIFLKY+SD+F+E YEE+K+D  +D ED 
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ  64

Query  69   DEYLARRAFWVPKEARWDYLQKNAKKPEIGKLIDEAMDLIERDNRSLKGVLLKNYSRPGL  128
            DEYLA   FWVPKEARW+Y++ NAKKPEIG++ID AM  IE +N SLKGVL K+Y+RP+L
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  129  NKQRLGELIDLIGTIGLGDKENRSKDVLGRVYEYFLGQFADAEGKKGGQFYTPRSIVKLL  188
            +K++LG++IDL+ T+ +GD E+R +DVLGRVYEYF+++FA AEGK++G+FYTP SIVKLL
Sbjct  125  DKEKLGDIIDLF-TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL  183

Query  189  VEMLEPFKGRIFDPCCGSGGMFVQSEKFIEAHGGRIGDISIYGQESNQTTWRLCKMNLAI  248
            VEM+EP+KGRI+DPCCGSGGMFVQSE+F+E H GR++DI+IYGQESN TTW+L KMNLAI
Sbjct  184  VEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAI  243

Query  249  RGIDATKIEW-GDSFRDDQFKDLRADFILANPPFNDSDWGGEHLQEDARWKFGVPPKNNA  307
            RGID    E+ +D+F++D  K+L+AD+ILANPPFN SDWG E+L +D RW+FG+PPK NA
Sbjct  244  RGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNA  303

Query  308  NFAWVQHFIHHLSPAGVAGFVLANGSMSSNTSGEGEIRKNIIEADLVDCMVALPSQLFYN  367
            N+AW++H I  L+P G AGFVLANGSMS++  +E EIRKN+IE DLV+C+V+LP+QLFY+
Sbjct  304  NYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYS  363

Query  368  TMIPACLWFLSRNKGNHKFRARNGQILFIDARMMGVMIDRRHRELTDEDIKKISDTYHAW  427
            T IP CLWF+S NKG++  + R+ +ILFIDAR +G M+ R  +E++DEDI+K+++TYHAW
Sbjct  364  TQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAW  423

Query  428  RGELKDKKYEDIPGFCKSATLEEVRKQQWILTPGRYVGAeeeeeddeefeeKMNRLTSEL  487
            RG  +DK YEDI+GFCK A LEEV++++ ILTPGRYVG  + EED+E FE+KM+R+TSEL
Sbjct  424  RGT-NDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSEL  482

Query  488  AKQMEEGRRLDEEIKKNLASIGYRI  512
            + Q   ++ L+++I+K+L ++GY +
Sbjct  483  SEQFAKSKELEDQIRKSLEGLGYGV  507

24) Desdi_0308 in NC_019903


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  564 bits (2129),  Expect = 4e-162, Method: Compositional matrix adjust.
 Identities = 315/528 (60%), Positives = 418/528 (80%), Gaps = 35/528 (6%)

Query  1    MSVSLEFENKLWEMADKLRGNIQPSDYKSVILGLIFLKYISDSFEDKYNELLAEGDGFEE  60
            +  ++ FE+KLW+ ADKLRG++++++YK+V LGLIFLKY+SDSFE+KY+EL  +  + EE
Sbjct  3    LMATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEE  62

Query  61   DRDAYLEDNIFFVPPSARWEFIKKSAKQSTIGQIIDEAMIAIERENKNLKGVLPKNYARP  120
            D+D YL +NIF VP  ARW++I+ +AK++ IGQIID AMIAIE EN +LKGVLPK+YARP
Sbjct  63   DQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARP  122

Query  121  ELDKTKLGELIDLFSFNLGNKAAKAQDILGRVYEYFLGKFGSSE----GEFYTPPSIVKL  176
             LDK KLG++IDLF+F++G+  ++ QD+LGRVYEYF++KF+S+E    GEFYTP+SIVKL
Sbjct  123  ALDKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKL  182

Query  177  LVGMIEPYKGRVYDPCCGSGGMFVQSQKFVEEHRGRKDDIHIFGQEFTATTWRLCKMNLA  236
            LV MIEPYKGR+YDPCCGSGGMFVQS++FVE H+GR DDI I+GQE  +TTW+L KMNLA
Sbjct  183  LVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLA  242

Query  237  IRGIDGNLGERDADTFGNDLHKNLRADFVLANPPFNVSDYTL--IQDDARWKYGIPPANN  294
            IRGID +LGER+ADTF NDLHK L+AD++LANPPFN SD     + DD RW++GIPP  N
Sbjct  243  IRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGN  302

Query  295  ANYAWIEHIISKLSPNGVAGFVLANGSMSTSTKAEAEIRKNIIEAGLVDCIITMPPNLFY  354
            ANYAWIEH+ISKL+PNG AGFVLANGSMSTS K E EIRKN+IE +LV+CI+T+P +LFY
Sbjct  303  ANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFY  362

Query  355  NVTIPVCLWFISKKRE-----NRKDKILFIDARKMGYMETRKHREMTDEEIKQIYDTYHN  409
            +  IPVCLWFIS+++      +R + ILFIDAR +G M +R  +E +DE+I+++ +TYH 
Sbjct  363  STQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHA  422

Query  410  WRDTGATSEKLMVAEKAKLYKIDNYKDEEMGEYQDIQGFCKSASIEEVRSHEYILTPGRY  469
            WR+T   +                        Y+DI GFCK A++EEV+++EYILTPGRY
Sbjct  423  WRGTNDKP------------------------YEDIAGFCKVANLEEVKNNEYILTPGRY  458

Query  470  VGIEEVEDDGEPFDEKMAKLTGELAEMFAKSHTLEEEIKRRLGAIGYD  517
            VG+ +VE+D EPF++KM ++T+EL+E FAKS  LE++I++ L ++GY+
Sbjct  459  VGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYG  506

25) DCF50_p1411 in NC_018867


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  563 bits (2127),  Expect = 5e-162, Method: Compositional matrix adjust.
 Identities = 323/504 (65%), Positives = 418/504 (83%), Gaps = 16/504 (3%)

Query  4    VSLGFENQLWEMADKLRGNIESSEYKHVVLGLIFLKYVSDGFDEKYKelldegdgfeeda  63
             ++GFE++LW+ ADKLRG+++++EYK+V LGLIFLKYVSD+F+EKY EL ++  + EED 
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ  64

Query  64   daYNEENIFFVPQEARWDFIKSQAKKPTIGQVIDDAMVAVEKSNATLKGVLPKNYARPEI  123
            D Y  ENIF VP+EARW++I+ +AKKP IGQ+ID AM+A+E+ N +LKGVLPK+YARP +
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  124  DKTKLGELIDLFSFKIGDKEAKAQDVLGRVYEYFLGQFGSSE----GEFYTPPTIVKILV  179
            DK KLG++IDLF+FK+GD E++ QDVLGRVYEYF+++F+S+E    GEFYTP++IVK+LV
Sbjct  125  DKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLV  184

Query  180  GMIEPYKGRVYDPCCGSGGMFVQSQRFVEEHEGRKDDIHIYGQEYTATTWRLCKMNLAIR  239
             MIEPYKGR+YDPCCGSGGMFVQS+RFVE H+GR DDI IYGQE  +TTW+L KMNLAIR
Sbjct  185  EMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIR  244

Query  240  GIDGNLGDRDADTFGNDLHKNLRADYILANPPFNVSDYTL--IQDDVRWKYGIPPARNAN  297
            GID +LG+R+ADTF NDLHK L+ADYILANPPFN SD     + DD RW++GIPP  NAN
Sbjct  245  GIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNAN  304

Query  298  YAWISHMISKLSPSGIAGFVMANGSMSttttgegeIRKNIIEAPNGGLVDCIVTMPTNLF  357
            YAWI HMISKL+P+G AGFV+ANGSMST+  +E EIRKN+IE    +LV+CIVT+P +LF
Sbjct  305  YAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQ---DLVECIVTLPGQLF  361

Query  358  YTVTIPVCLWFVSKKRE-----NRKDKILFIDARKMGHMVTRKHRELSDEEIKQICDTYH  412
            Y+  IPVCLWF+S+++      +R + ILFIDAR +GHMV+R  +E+SDE+I+++ +TYH
Sbjct  362  YSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYH  421

Query  413  NWR--NDKGYEDIQGFCKSTSLDEVRGHEYILTPGRYVGIEEKEADSEPFEDKMDRLTVE  470
             WR  NDK YEDI GFCK ++L+EV+ +EYILTPGRYVG+ + E D EPFE+KM+R+T E
Sbjct  422  AWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSE  481

Query  471  LAEMFAKSRHLEDEIRERLGGIGY  494
            L+E FAKS++LED+IR  L G+GY
Sbjct  482  LSEQFAKSKELEDQIRKSLEGLGY  505

26) Amico_0449 in NC_014011


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  561 bits (2118),  Expect = 3e-161, Method: Compositional matrix adjust.
 Identities = 323/503 (65%), Positives = 415/503 (83%), Gaps = 12/503 (2%)

Query  1    MSVNLEFEDKLWEMADKLRGNIQPSDYKDVVLGLIFLKYISDSFEEKYNELVAEEEGFEE  60
            +   + FE+KLW+ ADKLRG++++++YK+V LGLIFLKY+SDSFEEKY+EL  +  + EE
Sbjct  3    LMATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEE  62

Query  61   DRDAYVAENIFYVPPSARWDFIKKNAKQSTIGQIIDDAMITIERENRNLKGVLPKNYARP  120
            D+D Y+AENIF VP  ARW++I+ NAK++ IGQIID AMI+IE EN +LKGVLPK+YARP
Sbjct  63   DQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARP  122

Query  121  ELDKAKLGELVDLFSFNLGNKEAKAQDILGRVYEYFLGKFGSSE----GEFYTPPSIVKL  176
             LDK KLG+++DLF+F++G+ E++ QD+LGRVYEYF++KF+S+E    GEFYTP+SIVKL
Sbjct  123  ALDKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKL  182

Query  177  LVGMIEPYKGRVYDPCCGSGGMFVQSSRFVEEHQGRKDDIHIFGQEYTATTWRLCKMNLA  236
            LV MIEPYKGR+YDPCCGSGGMFVQS RFVE HQGR DDI I+GQE  +TTW+L KMNLA
Sbjct  183  LVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLA  242

Query  237  IRGIDGNLGARDADTFGNDLHKNIRADYILANPPFNVSDYTL--IPDDARWKYGIPPEKN  294
            IRGID +LG R+ADTF NDLHK ++ADYILANPPFN SD     + DD RW++GIPP  N
Sbjct  243  IRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGN  302

Query  295  ANYAWIEHIISKLSPTGVAGFVLANGSMSTTTKAEAEIRKNIIEAGLVDCIVTMPPNLFY  354
            ANYAWIEH+ISKL+P G AGFVLANGSMST+ K E EIRKN+IE +LV+CIVT+P +LFY
Sbjct  303  ANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFY  362

Query  355  NVTIPVCLWFISKKRE-----NKQDKILFIDARKMGTMVTRKHREFSDGEIAKIYDTYHN  409
            +  IPVCLWFIS+++      ++++ ILFIDAR +G MV+R  +EFSD +I K+ +TYH 
Sbjct  363  STQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHA  422

Query  410  WRD-NKKEYKDIQGFCKSADIEEVREHEYILTPGRYVGIeeveddgepfeeKMTRLTGEL  468
            WR+ N K Y DI GFCK A++EEV+++EYILTPGRYVG+ +VE+D EPFE+KM R+T+EL
Sbjct  423  WRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSEL  482

Query  469  AEMFAKSHKLEEEIKQRLGAIGY  491
            +E FAKS  LE++I++ L ++GY
Sbjct  483  SEQFAKSKELEDQIRKSLEGLGY  505

27) SCE1572_29145 in NC_021658


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  559 bits (2111),  Expect = 1e-160, Method: Compositional matrix adjust.
 Identities = 315/501 (63%), Positives = 413/501 (83%), Gaps = 4/501 (0%)

Query  151  LGFERKLFQAADKLRNNMDAAEYKHVVLGLIFLKYISDAFDDLHQRLSAQVDEGADPEDR  210
            +GFE KL QAADKLR +MDAAEYK+V LGLIFLKY+SD+F++  + L    D  AD ED+
Sbjct  7    IGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQ--DPYADEEDQ  64

Query  211  DEYRAERVFWVPKEARWAAIQANAKQPKIGQVIDDAMVAIERDNLSLKGVLPKNYGRPQL  270
            DEY AE +FWVPKEARW  I+ NAK+P IGQ+ID AM+AIE +N SLKGVLPK+Y+RP L
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  271  DKQRLGELVDLIGTIGFGSRQSRSKDILGRVYEYFLSEFALAEGKKGGQFYTPGSVVRLL  330
            DK++LG+++DL+ T+  G  +SR +D+LGRVYEYF++ FA AEGK++G+FYTP+S+V+LL
Sbjct  125  DKEKLGDIIDLF-TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL  183

Query  331  VKMLAPYKGRVYDPCCGSGGMFVQSEKFIEKHGGRVGDISVYGQESNPTTWRLAKMNLAI  390
            V M+ PYKGR+YDPCCGSGGMFVQSE+F+EKH GR++DI++YGQESNPTTW+LAKMNLAI
Sbjct  184  VEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAI  243

Query  391  RGIEANLGPENADTFHRDLHRDLKADYILANPPFNAKDWGQERLKEDVRWKYGTPPASSA  450
            RGI+ +LG  NADTFH DLH++LKADYILANPPFNA DWGQERL +D RW++G PP ++A
Sbjct  244  RGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNA  303

Query  451  NFAWVQHFIHHLAPAGQAGFVLANGSMSSNQSGEGEIRKAIIEADLVDCMVALPGQLFYS  510
            N+AW++H I  LAP G AGFVLANGSMS++  +E EIRK +IE DLV+C+V+LPGQLFYS
Sbjct  304  NYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYS  363

Query  511  TQIPVCFWFLARDKKNGRFRDRRGQILFIDARKLGRMIDRTQRELTDEDVARVAGTYHAW  570
            TQIPVC+WF++ +K +   ++R  +ILFIDAR +G+M+ RT +E++DED+ +VA TYHAW
Sbjct  364  TQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAW  423

Query  571  RGDKGAGKYEDIAGFCKNATLDEVRAHQHVLTPGRYVGAedvedeeepfeeRFSKLVAKL  630
            RG ++   YEDIAGFCK A L+EV+ ++ +LTPGRYVG  DVE++EEPFE++  ++ + L
Sbjct  424  RGTNDKP-YEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSEL  482

Query  631  NEQFDEGRKLELEISRRLATL  651
            +EQF  ++ LE +I + L  L
Sbjct  483  SEQFAKSKELEDQIRKSLEGL  503

28) Veis_3006 in NC_008786


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  558 bits (2107),  Expect = 2e-160, Method: Compositional matrix adjust.
 Identities = 297/508 (59%), Positives = 416/508 (82%), Gaps = 7/508 (1%)

Query  11   SNLGFEAEMFKAADKLRGNMEPSDYKHVALGLIFLKYISDTFEARHKSLLADNPQDVEDR  70
            + +GFE  + +AADKLRG+M++++YK+VALGLIFLKY+SD+FE +   L  D   D ED+
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ  64

Query  71   DAYLADNVFWVPKDARWSHLQAHAKQPTIGTLIDDAMRAIEKDNATLQSVLPKDYARPAL  130
            D YLA+N+FWVPK+ARW  ++ +AK+P IG +ID AM AIE++N +L++VLPK+YARPAL
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  131  NKVMLGELIDLISGITLNQEGHASRDILGRVYEYFLGQFAGAEGKRGGEFYTPGSVVRTL  190
            +K  LG++IDL++ + + +     +D+LGRVYEYF+++FA+AEGK +GEFYTP+S+V+ L
Sbjct  125  DKEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL  183

Query  191  VEMLEPYQGRIYDPCCGSGGMFVQSEKFVQEHGGRIGDIAIYGQESNHVTWRLAKMNLAV  250
            VEM+EPY+GRIYDPCCGSGGMFVQSE+FV+ H GR++DIAIYGQESN  TW+LAKMNLA+
Sbjct  184  VEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAI  243

Query  251  RGIDSDIRWNNEGSFHKDELRDLKADYILANPPFNISDWGGDRLREDVRWKFGVPPVGNA  310
            RGID+D+   N ++FH+D  ++LKADYILANPPFN SDWG +RL +D RW+FG+PP GNA
Sbjct  244  RGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNA  303

Query  311  NYAWLQHIVHHLAPNGTAGVVLANGSMSSSQSGEGDIRREMVEQDIVDCMVALPGQLFYS  370
            NYAW++H++  LAPNGTAG VLANGSMS+S  +E +IR++++EQD+V+C+V+LPGQLFYS
Sbjct  304  NYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYS  363

Query  371  TQIPACLWFLARDKSNGRAGKAYLRDRRKEVLFIDARKLGVLVDRTRRELTDADVRRIAG  430
            TQIP CLWF++ +K  G+ GK   ++R +E+LFIDAR +G +V RT +E++D D++++A 
Sbjct  364  TQIPVCLWFISNNK--GQNGK---KERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQ  418

Query  431  TYHAWRGEPGVGAYADVPGFCKAATLDDIRKHGHVLTPGRYVGAEEVADDGTPFEEKMQI  490
            TYHAWRG  +  +Y D++GFCK A L++++++  +LTPGRYVG  +V +D  PFE+KM+ 
Sbjct  419  TYHAWRGTND-KPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMER  477

Query  491  LTAELNAQFAESARLEQAIRLNLQALGY  518
            +T+EL+ QFA S  LE+ IR +L++LGY
Sbjct  478  ITSELSEQFAKSKELEDQIRKSLEGLGY  505

29) GYMC52_2379 in NC_014915


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  555 bits (2096),  Expect = 2e-159, Method: Compositional matrix adjust.
 Identities = 316/505 (63%), Positives = 419/505 (83%), Gaps = 9/505 (1%)

Query  1    MATIGFEEKLWSAADKLRNNMDAAEYKHVVLGLIFLKYVSDTFQEKWEELMKEDPDFAED  60
            MATIGFEEKLW AADKLR +MDAAEYK+V LGLIFLKYVSD+F+EK EEL ++     ED
Sbjct  4    MATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEED  63

Query  61   RDAYMADGVFWVPETARWSYIAERSKSPEIGKIVDEALDAIEKENDSLKGVLPKNYSRPE  120
            +D Y+A+ +FWVP  ARW YI + +K PEIG+I+D A+ AIE+EN+SLKGVLPK+Y+RP 
Sbjct  64   QDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPA  123

Query  121  LDKRILGEIIDLFSNIDVGGSGAKEKDVLGRVYEYFLGKFAASEGKGGGEFYTPKCVVKL  180
            LDK  LG+IIDLF+ + VG++ ++ +DVLGRVYEYF++KFA++EGK +GEFYTP  +VKL
Sbjct  124  LDKEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKL  182

Query  181  MVEMIQPFKGYVYDPACGSGGMFVQSMKFVEEHAGNKFDISIYGQESNPTTWKLAKMNLA  240
            +VEMI+P+KG +YDP CGSGGMFVQS +FVE H G   DI+IYGQESNPTTWKLAKMNLA
Sbjct  183  LVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLA  242

Query  241  IRGIENNLGPKHADTFHEDLHPTLKADYILANPPFNDSDWGQPKLIDDPRWKFGIPPAGN  300
            IRGI+N+LG ++ADTFH+DLH  LKADYILANPPFN SDWGQ +L+DD RW+FGIPP GN
Sbjct  243  IRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGN  302

Query  301  ANYAWLQHMIDKLSQNGKAAVVLANGSLSSMTSGEGEIRKNIVNADLVDAIIALPDKLFY  360
            ANYAW++HMI KL+ NG A+ VLANGS+S+   +E EIRKN+++ DLV+ I++LP++LFY
Sbjct  303  ANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFY  362

Query  361  TTQIPVCIWILNRNKKHPRK------TLFIDARKFGQLVTRKLRELTDEDIRKIADTYIN  414
            +TQIPVC+W+++ NK +  K       LFIDAR +G++V+R L+E++DEDI+K+A+TY  
Sbjct  363  STQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHA  422

Query  415  WQNNEN--YEDVQGFCKSATIDDIREHNYILTPGRYVGIeeeeedgesfeekmeRLTATL  472
            W+  ++  YED+ GFCK A ++++++++YILTPGRYVG+ + EED E+FE+KMER+T+ L
Sbjct  423  WRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSEL  482

Query  473  AKQFQKSRQLEEEIRKQLGGIGYEI  497
            + QF KS++LE++IRK L G+GY +
Sbjct  483  SEQFAKSKELEDQIRKSLEGLGYGV  507

30) GYMC61_0286 in NC_013411


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  555 bits (2096),  Expect = 2e-159, Method: Compositional matrix adjust.
 Identities = 316/505 (63%), Positives = 419/505 (83%), Gaps = 9/505 (1%)

Query  1    MATIGFEEKLWSAADKLRNNMDAAEYKHVVLGLIFLKYVSDTFQEKWEELMKEDPDFAED  60
            MATIGFEEKLW AADKLR +MDAAEYK+V LGLIFLKYVSD+F+EK EEL ++     ED
Sbjct  4    MATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEED  63

Query  61   RDAYMADGVFWVPETARWSYIAERSKSPEIGKIVDEALDAIEKENDSLKGVLPKNYSRPE  120
            +D Y+A+ +FWVP  ARW YI + +K PEIG+I+D A+ AIE+EN+SLKGVLPK+Y+RP 
Sbjct  64   QDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPA  123

Query  121  LDKRILGEIIDLFSNIDVGGSGAKEKDVLGRVYEYFLGKFAASEGKGGGEFYTPKCVVKL  180
            LDK  LG+IIDLF+ + VG++ ++ +DVLGRVYEYF++KFA++EGK +GEFYTP  +VKL
Sbjct  124  LDKEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKL  182

Query  181  MVEMIQPFKGYVYDPACGSGGMFVQSMKFVEEHAGNKFDISIYGQESNPTTWKLAKMNLA  240
            +VEMI+P+KG +YDP CGSGGMFVQS +FVE H G   DI+IYGQESNPTTWKLAKMNLA
Sbjct  183  LVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLA  242

Query  241  IRGIENNLGPKHADTFHEDLHPTLKADYILANPPFNDSDWGQPKLIDDPRWKFGIPPAGN  300
            IRGI+N+LG ++ADTFH+DLH  LKADYILANPPFN SDWGQ +L+DD RW+FGIPP GN
Sbjct  243  IRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGN  302

Query  301  ANYAWLQHMIDKLSQNGKAAVVLANGSLSSMTSGEGEIRKNIVNADLVDAIIALPDKLFY  360
            ANYAW++HMI KL+ NG A+ VLANGS+S+   +E EIRKN+++ DLV+ I++LP++LFY
Sbjct  303  ANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFY  362

Query  361  TTQIPVCIWILNRNKKHPRK------TLFIDARKFGQLVTRKLRELTDEDIRKIADTYIN  414
            +TQIPVC+W+++ NK +  K       LFIDAR +G++V+R L+E++DEDI+K+A+TY  
Sbjct  363  STQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHA  422

Query  415  WQNNEN--YEDVQGFCKSATIDDIREHNYILTPGRYVGIeeeeedgesfeekmeRLTATL  472
            W+  ++  YED+ GFCK A ++++++++YILTPGRYVG+ + EED E+FE+KMER+T+ L
Sbjct  423  WRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSEL  482

Query  473  AKQFQKSRQLEEEIRKQLGGIGYEI  497
            + QF KS++LE++IRK L G+GY +
Sbjct  483  SEQFAKSKELEDQIRKSLEGLGYGV  507

31) hsdM in NC_012796


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  554 bits (2092),  Expect = 3e-159, Method: Compositional matrix adjust.
 Identities = 302/501 (61%), Positives = 403/501 (81%), Gaps = 2/501 (0%)

Query  29   ANLGFEGELFKAADKLRGNMEPSDYKHVALGLIFLKHISDSFEAKHAALTAEDPSCAEDP  88
            A +GFE  L +AADKLRG+M++++YK+VALGLIFLK +SDSFE K   L  +  +  ED 
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ  64

Query  89   DEYLAENIFWVPKEARWSHLQANAKQPGIGKIVDDALVAIEAKNESLKGVLPKDYARPAL  148
            DEYLAENIFWVPKEARW  ++ NAK+P IG+I+D A++AIE  NESLKGVLPK+YARPAL
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  149  NKVMLGELIDLISGIGLGTEQGQSRDVLGRVYEYFLSQFAGSEGKRGGEFYTPRSVVRVL  208
            +K  LG++IDL++ + +G  +++ +DVLGRVYEYF+++FA++EGK +GEFYTP S+V++L
Sbjct  125  DKEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL  183

Query  209  VDMLEPFKGRVYDPCCGSGGMFVQSNKFVAEHGGRLGDIAIYGQESNYTTWRLCKMNLAV  268
            V+M+EP+KGR+YDPCCGSGGMFVQS++FV  H GRL+DIAIYGQESN TTW+L KMNLA+
Sbjct  184  VEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAI  243

Query  269  RGIDSDIRWNSEGSFHKDELKDLRADFILANPPFNISDWGGERLREDVRWSFGIPPAGNA  328
            RGID+D+   + ++FH+D  K+L+AD+ILANPPFN SDWG ERL +D RW FGIPP GNA
Sbjct  244  RGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNA  303

Query  329  NFAWLQHIFHHLGPNGTAGVVLANGSMSSSQSGEGDIRKAMLEADVVDCMIALPGQLFYS  388
            N+AW++H++  L+PNGTAG VLANGSMS+S  +E +IRK ++E D+V+C+++LPGQLFYS
Sbjct  304  NYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYS  363

Query  389  TQIPACLWFLARDKANHGFRDRRGEVLFIDARKLGHLVDRTRREFSAEDIAKIAGTYHAW  448
            TQIP CLWF++ +K+++G ++R  E+LFIDAR +GH+V RT +EFS EDI K+A TYHAW
Sbjct  364  TQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAW  423

Query  449  RGEKDTGEYEDVPGFCKAASLEEIKGHGYVLTPGRYVGAEVVDDDDTPFEERFVALKERL  508
            RG +D   YED++GFCK A+LEE+K + Y+LTPGRYVG   V++D+ PFE++   +   L
Sbjct  424  RGTNDKP-YEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSEL  482

Query  509  EGQFVDAERLTATIRVRLGLL  529
              QF  +  L   IR  L  L
Sbjct  483  SEQFAKSKELEDQIRKSLEGL  503

32) Galf_1218 in NC_014394


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  554 bits (2092),  Expect = 3e-159, Method: Compositional matrix adjust.
 Identities = 296/504 (59%), Positives = 416/504 (83%), Gaps = 3/504 (0%)

Query  11   GNLGFEAEMFKAADKLRGNMEPSDYKHVALGLIFLKYISDAFEARHKALLEEDPQAAEDK  70
            + +GFE  + +AADKLRG+M++++YK+VALGLIFLKY+SD+FE +   L ++     ED+
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ  64

Query  71   DEYLADNVFWVPKDARWSHLQANAKLPTIGTLIDDAMRAIEKDNESLKGVLPKDYARPAL  130
            DEYLA+N+FWVPK+ARW  ++ NAK P IG +ID AM AIE++NESLKGVLPK+YARPAL
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  131  NKVMLGELIDLISGIALNEEGHASRDILGRVYEYFLGQFAGAEGKRGGEFYTPRSVVRVL  190
            +K  LG++IDL++ + + +     +D+LGRVYEYF+++FA+AEGK +GEFYTP S+V++L
Sbjct  125  DKEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL  183

Query  191  VEMLEPYQGRIYDPCCGSGGMFVQSEKFVQEHGGRIGDIAIYGQESNYVTWRLAKMNLAV  250
            VEM+EPY+GRIYDPCCGSGGMFVQSE+FV+ H GR++DIAIYGQESN  TW+LAKMNLA+
Sbjct  184  VEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAI  243

Query  251  RGIDSDIRWNNEGSFHKDELRDLKADYILANPPFNISDWGGDRLREDVRWKFGAPPVGNA  310
            RGID+D+   N ++FH+D  ++LKADYILANPPFN SDWG +RL +D RW+FG PP GNA
Sbjct  244  RGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNA  303

Query  311  NYAWLQHIVHHLAPNGTAGVVLANGSMSSTQSGEGDIRREMVEKDILDCMVALPGQLFYS  370
            NYAW++H++  LAPNGTAG VLANGSMS++  +E +IR++++E+D+++C+V+LPGQLFYS
Sbjct  304  NYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYS  363

Query  371  TQIPACLWFLARNKNPGNGWRDRRGEVLFIDARKLGVLVDRTRRELSDADVQKIADTYHA  430
            TQIP CLWF++ NK   NG ++R  E+LFIDAR +G +V RT +E+SD D+QK+A+TYHA
Sbjct  364  TQIPVCLWFISNNKGQ-NGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHA  422

Query  431  WRGEPNAGAYEDISGFCKSASLDDIRKQGHVVAPGRYVGAAETDDDEEPTSEKLSRLSSQ  490
            WRG  N  +YEDI+GFCK A+L++++++  +++PGRYVG A+ ++DEEP  +K+ R++S+
Sbjct  423  WRG-TNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSE  481

Query  491  LRTHFSENAQLEQAIKNALTEIGY  514
            L  +F+ + +LE+ I+++L  +GY
Sbjct  482  LSEQFAKSKELEDQIRKSLEGLGY  505

33) hsdM1 in NC_010163


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  553 bits (2086),  Expect = 9e-159, Method: Compositional matrix adjust.
 Identities = 300/469 (64%), Positives = 397/469 (85%), Gaps = 11/469 (2%)

Query  6    LGFEDKLWQMADKLRGNIESSEYKHVILGLVFLKYISDSFTERYEEIKANYPGMEEDRDA  65
            +GFE+KLWQ ADKLRG+++++EYK+V LGL+FLKY+SDSF E+YEE+K +  + EED+D 
Sbjct  7    IGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDE  66

Query  66   YESENVFFVPKDARWEYIKSQAKQSTIGQIIDNAMVQIEKENASLKGVLPKNYARPELDK  125
            Y +EN+F VPK+ARW+YI+ +AK++ IGQIID+AM+ IE+EN SLKGVLPK+YARP LDK
Sbjct  67   YLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALDK  126

Query  126  TRLGELIDLFSFNVGSKEARAKDVLGRVYEYFLKKFGTTEG----EFYTPPAIVKLLVNM  181
             +LG++IDLF+F+VG  E+R +DVLGRVYEYF+ KF+++EG    EFYTP++IVKLLV+M
Sbjct  127  EKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEM  186

Query  182  IEPYNGRVYDPCCGSGGMFVQSAKFVEEHAGKIGNISIYGQEYVATTWRLAKMNLAIRGI  241
            IEPY+GR+YDPCCGSGGMFVQS +FVE H G++++I+IYGQE  +TTW+LAKMNLAIRGI
Sbjct  187  IEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRGI  246

Query  242  DANLGERDGDTFTNDQHKTLRADYILANPPFNIKDWGQQHLIGDSRWQWGTPPATNANYA  301
            D +LGER++DTF ND HK L+ADYILANPPFN  DWGQ++L++D RWQ G PP  NANYA
Sbjct  247  DNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYA  306

Query  302  WISHMISKLSPRGIAGFVLANGSLSTSRSEEYEIRKKILEEGLVDCIVAMPSQLFYDVSI  361
            WI HMISKL+P G AGFVLANGS+STS  +E EIRK+++E++LV+CIV++P+QLFY   I
Sbjct  307  WIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQI  366

Query  362  PVSLWFVSKNK--NGRKDK---VLFIDARKMGYMETRKHRELTDEESEKIYSTYHAWR--  414
            PV LWF+S+NK  NG+K++   +LFIDAR +G M +R  +E++DE+ +K+  TYHAWR  
Sbjct  367  PVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRGT  426

Query  415  DDKDYQDIDGFCKSATLEEIRSHDYVLTPGRYVGIEEVEDDGIPFEEKM  463
            +DK Y+DI GFCK A LEE+++++Y+LTPGRYVG+ +VE+D  PFE+KM
Sbjct  427  NDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKM  475

34) CAP2UW1_2711 in NC_013194


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  546 bits (2061),  Expect = 1e-156, Method: Compositional matrix adjust.
 Identities = 307/529 (59%), Positives = 409/529 (78%), Gaps = 28/529 (5%)

Query  13   ANLGFEAKLWLAADKLRNNMDAAEYKHVVLGLIFLKYISDTFDEHHARLVAGSVAKSGDY  72
            A +GFE KLW AADKLR +MDAAEYK+V LGLIFLKY+SD+F+E    L      K + Y
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL------KQDPY  58

Query  73   EGANPEDEDEYLAANVFWVPVDARWAQIQSRAKLPSIGKDVDDAMVALERDNPRLKGALN  132
              A+ ED+DEYLA N+FWVP +ARW  I+  AK P IG+ +D AM+A+E +N  LKG L 
Sbjct  59   --ADEEDQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLP  116

Query  133  KNYGRADLDKHRLGELIDLIGSIQLADVASRSKDLLGRVFEYFLTQFASAEGKNGGQFYT  192
            K+Y+R+ LDK++LG++IDL+ +++++D  SR +D+LGRV+EYF+++FASAEGKN+G+FYT
Sbjct  117  KEYARPALDKEKLGDIIDLF-TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYT  175

Query  193  PSCVVRVLVEMLAPYKGRIYDPCCGSGGMFVQSEKFVEAHGGQLGDISIYGQESNPTTRR  252
            PS +V++LVEM+ PYKGRIYDPCCGSGGMFVQSE+FVE H G+L+DI+IYGQESNPTT++
Sbjct  176  PSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWK  235

Query  253  LAIMNLALRGIEADFGVENADTFRRDLHPDLRADYVLANPPFNDSDWFRKD--DDVRWQF  310
            LA MNLA+RGI+ D+G  NADTF+ DLH +L+ADY+LANPPFN SDW +    DD RWQF
Sbjct  236  LAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQF  295

Query  311  GVPPKGNANFAWVQHFIHHLAPAGFAGFVLANGSMSSNQSGEGDIRQQLIEADLVDCMVA  370
            G+PPKGNAN+AW++H I  LAP G AGFVLANGSMS++  +E +IR++LIE DLV+C+V+
Sbjct  296  GIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVT  355

Query  371  LPGQLFYSTQIPVCLWFLTKSKAAEAKRHFRERRKQTLFIDARKLGTLIDRVHRELTDAD  430
            LPGQLFYSTQIPVCLWF++++K+ ++K   +ER ++ LFIDAR +G ++ R  +E++D D
Sbjct  356  LPGQLFYSTQIPVCLWFISNNKGQNGK---KERENEILFIDAREIGHMVSRTLKEFSDED  412

Query  431  LQKIVTTYHAWRGDRVSHSPragegrgegaTAYEDLAGFCKSATTAEIAGHGFVLTPGRY  490
            +QK+  TYHAWRG                  +YED+AGFCK A   E+  + ++LTPGRY
Sbjct  413  IQKVAQTYHAWRGTN--------------DKPYEDIAGFCKVANLEEVKNNEYILTPGRY  458

Query  491  VGAEEVEDDGEPFAEKMPRLVAELHAQFAESAKLESAIKANMEKLGYGL  539
            VG  +VE+D EPF +KM R+ +EL  QFA S  LE  I+ ++E LGYG+
Sbjct  459  VGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

35) hsdM in NC_012489


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  544 bits (2055),  Expect = 3e-156, Method: Compositional matrix adjust.
 Identities = 305/505 (61%), Positives = 401/505 (80%), Gaps = 6/505 (1%)

Query  16   NIGFEAKLWAAADALRNNMDAAEYKHVVLGLIFLKYISDAFEIKHAELASQHADGADPED  75
             IGFE KLW AAD LR +MDAAEYK+V LGLIFLKY+SD+FE K  EL  ++   AD ED
Sbjct  6    TIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL--KQDPYADEED  63

Query  76   PDEYRADNIFWVPAEARWQFLKANAPQPGVGTMVDDAMAAIERDNPSLKGVLPKDYARPG  135
             DEY A+NIFWVP EARWQ+++ NA +P +G ++D AM AIE +N SLKGVLPK+YARP+
Sbjct  64   QDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPA  123

Query  136  LDKQRLGQIINLVSDIELGSSADKSKDTLGRVYEYFLSRFASAEGKSGGQFYTPSYVVRV  195
            LDK++LG+II+L + + +G +  + +D LGRVYEYF+++FASAEGK++G+FYTPS +V++
Sbjct  124  LDKEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKL  182

Query  196  LVEMLAPYKGRVYDPCCGSGGMFVQSEKFIEAHAGKLDDISIYGQESNYTTWRLAKMNLA  255
            LVEM+ PYKGR+YDPCCGSGGMFVQSE+F+E H G+LDDI+IYGQESN TTW+LAKMNLA
Sbjct  183  LVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLA  242

Query  256  IRGIDAQIG--HGDTLHDDKHPDLKADYVLANPPFNDSDWRGELLKDDQRWAYGAPPAGN  313
            IRGID ++G  ++DT+H+D H +LKADY+LANPPFN SDW  E L DD RW +G PP GN
Sbjct  243  IRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGN  302

Query  314  ANFAWVQHFIHHLSPTGLAGFVLANGSMSSNQSGEGEIRKTIVEADLVDCMVALPGQLFY  373
            AN+AW++H I  L+P G AGFVLANGSMS++  +E EIRK ++E DLV+C+V+LPGQLFY
Sbjct  303  ANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFY  362

Query  374  STQIPVCLWFLArnkrngrfrdrrgHVLFIDARKLGSMADRVRRELTDADIANIADTYHA  433
            STQIPVCLWF++ NK +   ++R  ++LFIDAR +G M  R  +E++D DI ++A+TYHA
Sbjct  363  STQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHA  422

Query  434  WRGDKDAGEYADVAGFCKSVYIDEIRQHGHVLTPGRYVGAEDIEDDGEPFELKMRRLSAQ  493
            WRG +D   Y D+AGFCK   ++E++++  +LTPGRYVG  D+E+D EPFE KM R++++
Sbjct  423  WRGTNDKP-YEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSE  481

Query  494  LHEQQIESADLDASILANLKELGYG  518
            L EQ   S +L+  I  +L  LGYG
Sbjct  482  LSEQFAKSKELEDQIRKSLEGLGYG  506

36) BTH_I2743 in NC_007651


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  543 bits (2048),  Expect = 1e-155, Method: Compositional matrix adjust.
 Identities = 294/505 (59%), Positives = 406/505 (81%), Gaps = 3/505 (0%)

Query  13   GTLGFEAELFKAADKLRGNMEPSDYKHVALGLIFLKYISDAFEARHKALLAEDVRAAEDK  72
            +T+GFE  L +AADKLRG+M++++YK+VALGLIFLKY+SD+FE +   L  +     ED+
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ  64

Query  73   DEYLADNVFWVPKEARWSHLQANAKLPAIGTLIDDAMRAIEKDNESLKGVLPKDYARPAL  132
            DEYLA+N+FWVPKEARW  ++ NAK P IG +ID AM AIE++NESLKGVLPK+YARPAL
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  133  NKVMLGELIDLISGIALNEEGDRSKDILGRVYEYFLGQFAGAEGKRGGEFYTPRSVVRVL  192
            +K  LG++IDL++ + + +   R +D+LGRVYEYF+++FA+AEGK +GEFYTP S+V++L
Sbjct  125  DKEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL  183

Query  193  VEMLEPYSGRVYDPCCGSGGMFVQSEKFVHEHGGRIGDIAIYGQESNYTTWRLAKMNLAV  252
            VEM+EPY GR+YDPCCGSGGMFVQSE+FV+ H GR++DIAIYGQESN TTW+LAKMNLA+
Sbjct  184  VEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAI  243

Query  253  RGIDSDIRWNNEGSFHKDELRDLKADYVLANPPFNISDWGGDRLREDVRWKFGAPPVGNA  312
            RGID+D+   N ++FH+D  ++LKADY+LANPPFN SDWG +RL +D RW+FG PP GNA
Sbjct  244  RGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNA  303

Query  313  NYAWLQHIFHHLAPNGTAGVVLANGSMSSNQSGEGEIRRAMIEADAVDCMVALPGQLFYS  372
            NYAW++H++  LAPNGTAG VLANGSMS++  +E EIR+ +IE D V+C+V+LPGQLFYS
Sbjct  304  NYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYS  363

Query  373  TQIPACLWFLARNKNPGGGLRDRRGQVLFIDARKLGVLIDRTRRELNDDDIKRIADSYHA  432
            TQIP CLWF++ NK   G  ++R  ++LFIDAR +G ++ RT +E++D+DI+++A++YHA
Sbjct  364  TQIPVCLWFISNNKGQNGK-KERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHA  422

Query  433  WRGEKEAGEYADVLGFCKSASLDEIRKHGHVLTPGRYVGAEAQADDGEPFDEVMRRLSAQ  492
            WRG ++   Y D+ GFCK A+L+E++++  +LTPGRYVG     +D EPF++ M R++++
Sbjct  423  WRGTNDKP-YEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSE  481

Query  493  WRAQQLEGQRVDDAIERNLRELGYG  517
               Q   ++ ++D I ++L  LGYG
Sbjct  482  LSEQFAKSKELEDQIRKSLEGLGYG  506

37) Acid345_3758 in NC_008009


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  542 bits (2044),  Expect = 2e-155, Method: Compositional matrix adjust.
 Identities = 304/502 (61%), Positives = 396/502 (79%), Gaps = 6/502 (1%)

Query  11   EAKLWSMADALRNNMDAAEYKHVVLGLIFLKYISDAFEAKHAELEQKMDQGADPEDPDEY  70
            E KLW  AD LR +MDAAEYK+V LGLIFLKY+SD+FE K  EL Q  D  AD ED DEY
Sbjct  10   EEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQ--DPYADEEDQDEY  67

Query  71   RAVSIFWVPREARWAHLKDNAPQPKIGTLVDDAMAAIERDNQSLKGVLPKDYARPGLDKQ  130
             A +IFWVP+EARW  ++DNA +P IG ++D AM AIE +N+SLKGVLPK+YARP+LDK+
Sbjct  68   LAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALDKE  127

Query  131  RLGQLINLVSGIGLGTPAARAKDILGRVYEYFLAQFASAEGKKGGQFYTPSHVVRILVEM  190
            +LG++I+L + + +G   +R +D+LGRVYEYF+A+FASAEGK++G+FYTPS +V++LVEM
Sbjct  128  KLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEM  186

Query  191  LAPYKGRVYDPCCGSGGMFVSSEKFIEAHSGKLGDISIYGQESNYTTWRLAKMNLAIRGI  250
            + PYKGR+YDPCCGSGGMFV SE+F+E H G+L+DI+IYGQESN TTW+LAKMNLAIRGI
Sbjct  187  IEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRGI  246

Query  251  DAQI--QHGDTFHNDRHPDLKADCVLANPPFNDSDWRGELLKEDKRWVFGVPPAGNANFA  308
            D ++  +++DTFHND H +LKAD +LANPPFN SDW  E L +D RW FG+PP GNAN+A
Sbjct  247  DNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYA  306

Query  309  WIQHFIYHLAPTGLAGFVLANGSMSTNTSGEGEIRKGIIESDLVDCMVALPGQLFYSTGI  368
            WI+H I  LAP G AGFVLANGSMST+  +E EIRK +IE DLV+C+V+LPGQLFYST I
Sbjct  307  WIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQI  366

Query  369  PVCLWFVARSKSSGRFRNRRGETLFIDARKFGSLIDRVHRELSDADVAKIAGTYHAWRGD  428
            PVCLWF++ +K+    ++R  E LFIDAR +G ++ R  +E+SD D+ K+A TYHAWRG 
Sbjct  367  PVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRGT  426

Query  429  EGAGGYADVAGFCKAATLDDIRKHSHILTPGRYVGAKETEDDGEPIEQKMKTLTDALRMQ  488
            ++   Y D+AGFCK A L++++++  ILTPGRYVG  + E+D EP+EQKM  +T  L  Q
Sbjct  427  NDK-PYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQ  485

Query  489  LAESRKLEGEITGNLKEIGYEL  510
            +A S+ LE++I  +L  +GY +
Sbjct  486  FAKSKELEDQIRKSLEGLGYGV  507

38) Caur_1810 in NC_010175


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  542 bits (2045),  Expect = 2e-155, Method: Compositional matrix adjust.
 Identities = 301/510 (60%), Positives = 412/510 (81%), Gaps = 11/510 (2%)

Query  16   ANLGFEPQLWQTANALRGSMDAAEYKHVVLGLIFLKYISDAFEEHRERLQNIPNADPEDP  75
            A +GFE +LWQ+A+ LRGSMDAAEYK+V LGLIFLKY+SD+FEE  E L++ P AD ED 
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ  64

Query  76   DEYRADNVFWVPPDARWVELRNNARQPNIGELIDQAMIAVERDNPSLKGVLPKDYARPAL  135
            DEY A+N+FWVP +ARW  + +NA++P+IG++ID+AMIA+E +N SLKGVLPK+YARPAL
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  136  DQQRLGQLIDLVSNIPVGTASARSKDVLGRVYEYFLSQFASAEGKKGGEFYTPRCVVRLL  195
            D+++LG++IDL + + VG + +R +DVLGRVYEYF+++FASAEGK++GEFYTP  +V+LL
Sbjct  125  DKEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL  183

Query  196  VEMLEPYQGRVYDPCCGSAGMFIQSVEFIEAHATGNGNGSRARARISIYGQELNYTTWRL  255
            VEM+EPY+GR+YDPCCGS+GMF+QS  F+E H    ++       I+IYGQE N TTW+L
Sbjct  184  VEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDD-------IAIYGQESNPTTWKL  236

Query  256  AKMNLAIRGIDGRIEQ--GDTFRNDRFPDLKADYILANPPFNMKEWGGEQLRNDKRWQYG  313
            AKMNLAIRGID  + +  +DTF+ND   +LKADYILANPPFN  +WG E+L +D RWQ+G
Sbjct  237  AKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFG  296

Query  314  IPPVGNANFAWVQHIVHHLAPAGVAGFVLANGSMSSNQSGEGEIRRKLIEADLVDCMVAL  373
            IPP GNAN+AW++H++  LAP G AGFVLANGSMS++  +E EIR++LIE DLV+C+V+L
Sbjct  297  IPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTL  356

Query  374  PGQLFYSTQIPACLWFLARNRNNGKFRDRRKQILFIDARRLGRMVDRIHRELTDEEIERI  433
            PGQLFYSTQIP CLWF++ N+ +   ++R ++ILFIDAR +G+MV R  +E++DE+I+++
Sbjct  357  PGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKV  416

Query  434  ACTYHAWRGESDAGEYRDIPGFCKSASLEDVRKHGYVLTPGRYVGSEVREDDDEPFAEKM  493
            A TYHAWRG +D   Y DI+GFCK A+LE+V+++ Y+LTPGRYVG    E+D+EPF +KM
Sbjct  417  AQTYHAWRGTNDKP-YEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKM  475

Query  494  QWLVAQLREQQAEAAKLDEAIVANLQELGF  523
            +++ ++L EQ A +  L++ I  +L+ LG+
Sbjct  476  ERITSELSEQFAKSKELEDQIRKSLEGLGY  505

39) Chy400_1958 in NC_012032


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  542 bits (2045),  Expect = 2e-155, Method: Compositional matrix adjust.
 Identities = 301/510 (60%), Positives = 412/510 (81%), Gaps = 11/510 (2%)

Query  16   ANLGFEPQLWQTANALRGSMDAAEYKHVVLGLIFLKYISDAFEEHRERLQNIPNADPEDP  75
            A +GFE +LWQ+A+ LRGSMDAAEYK+V LGLIFLKY+SD+FEE  E L++ P AD ED 
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ  64

Query  76   DEYRADNVFWVPPDARWVELRNNARQPNIGELIDQAMIAVERDNPSLKGVLPKDYARPAL  135
            DEY A+N+FWVP +ARW  + +NA++P+IG++ID+AMIA+E +N SLKGVLPK+YARPAL
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  136  DQQRLGQLIDLVSNIPVGTASARSKDVLGRVYEYFLSQFASAEGKKGGEFYTPRCVVRLL  195
            D+++LG++IDL + + VG + +R +DVLGRVYEYF+++FASAEGK++GEFYTP  +V+LL
Sbjct  125  DKEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL  183

Query  196  VEMLEPYQGRVYDPCCGSAGMFIQSVEFIEAHATGNGNGSRARARISIYGQELNYTTWRL  255
            VEM+EPY+GR+YDPCCGS+GMF+QS  F+E H    ++       I+IYGQE N TTW+L
Sbjct  184  VEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDD-------IAIYGQESNPTTWKL  236

Query  256  AKMNLAIRGIDGRIEQ--GDTFRNDRFPDLKADYILANPPFNMKEWGGEQLRNDKRWQYG  313
            AKMNLAIRGID  + +  +DTF+ND   +LKADYILANPPFN  +WG E+L +D RWQ+G
Sbjct  237  AKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFG  296

Query  314  IPPVGNANFAWVQHIVHHLAPAGVAGFVLANGSMSSNQSGEGEIRRKLIEADLVDCMVAL  373
            IPP GNAN+AW++H++  LAP G AGFVLANGSMS++  +E EIR++LIE DLV+C+V+L
Sbjct  297  IPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTL  356

Query  374  PGQLFYSTQIPACLWFLARNRNNGKFRDRRKQILFIDARRLGRMVDRIHRELTDEEIERI  433
            PGQLFYSTQIP CLWF++ N+ +   ++R ++ILFIDAR +G+MV R  +E++DE+I+++
Sbjct  357  PGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKV  416

Query  434  ACTYHAWRGESDAGEYRDIPGFCKSASLEDVRKHGYVLTPGRYVGSEVREDDDEPFAEKM  493
            A TYHAWRG +D   Y DI+GFCK A+LE+V+++ Y+LTPGRYVG    E+D+EPF +KM
Sbjct  417  AQTYHAWRGTNDKP-YEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKM  475

Query  494  QWLVAQLREQQAEAAKLDEAIVANLQELGF  523
            +++ ++L EQ A +  L++ I  +L+ LG+
Sbjct  476  ERITSELSEQFAKSKELEDQIRKSLEGLGY  505

40) GWCH70_1644 in NC_012793


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  541 bits (2040),  Expect = 4e-155, Method: Compositional matrix adjust.
 Identities = 315/505 (63%), Positives = 421/505 (84%), Gaps = 9/505 (1%)

Query  1    MATIGFEEKLWSAADKLRNNMDAAEYKHVVLGLIFLKYVSDTFQEKWEELMKEDPDFAED  60
            MATIGFEEKLW AADKLR +MDAAEYK+V LGLIFLKYVSD+F+EK EEL ++     ED
Sbjct  4    MATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEED  63

Query  61   RDAYMADGVFWVPETARWNYIAERSKLPEIGKIVDEALDAIEKENDSLKGVLPKNYSRPE  120
            +D Y+A+ +FWVP  ARW+YI + +K PEIG+I+D A+ AIE+EN+SLKGVLPK+Y+RP 
Sbjct  64   QDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPA  123

Query  121  LDKRILGEIIDLFSNIDVGGSGAKEKDVLGRVYEYFLGKFAASEGKGGGEFYTPKCVVKL  180
            LDK  LG+IIDLF+ + VG++ ++ +DVLGRVYEYF++KFA++EGK +GEFYTP  +VKL
Sbjct  124  LDKEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKL  182

Query  181  MVEMIQPFKGYVYDPACGSGGMFVQSIKFVEEHAGNKFDVSIYGQESNPTTWKLAKMNLA  240
            +VEMI+P+KG +YDP CGSGGMFVQS +FVE H G   D++IYGQESNPTTWKLAKMNLA
Sbjct  183  LVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLA  242

Query  241  IRGIENNLGPKHADTFHEDLHPTLKADYILANPPFNDSDWGQPKLVEDPRWKFGVPPAGN  300
            IRGI+N+LG ++ADTFH+DLH  LKADYILANPPFN SDWGQ +L++D RW+FG+PP GN
Sbjct  243  IRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGN  302

Query  301  ANYAWLQHIIDKLGQNGKAAVVLANgslssttsgegeIRKNIVNADLVDAIIALPDKLFY  360
            ANYAW++H+I KL+ NG A+ VLANGS+S++  +E EIRKN+++ DLV+ I++LP++LFY
Sbjct  303  ANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFY  362

Query  361  TTSIPVCIWILNRNKKNPGKT------LFIDARKFGQLVTRKLRELSDEDIRKIADTYIH  414
            +T IPVC+W+++ NK + GK       LFIDAR +G++V+R L+E+SDEDI+K+A+TY  
Sbjct  363  STQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHA  422

Query  415  WQNNDN--YEDVQGFCKSASLEEIREHDYILTPGRYVGVeeeeedgesfeekmeRLTTTL  472
            W+  ++  YED+ GFCK A+LEE+++++YILTPGRYVG+ + EED E+FE+KMER+T+ L
Sbjct  423  WRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSEL  482

Query  473  AKQFKKSRELEEEIRTQLGGIGFEL  497
            + QF KS+ELE++IR  L G+G+ +
Sbjct  483  SEQFAKSKELEDQIRKSLEGLGYGV  507

41) Turpa_2670 in NC_018020


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  540 bits (2037),  Expect = 8e-155, Method: Compositional matrix adjust.
 Identities = 315/532 (60%), Positives = 421/532 (80%), Gaps = 31/532 (5%)

Query  50   ANLGFEATLFKAADKLRNNMDAAEYKHVVLGLIFLKYISDAFQEKHDQLVAEQAQGADPE  109
            A +GFE  L +AADKLR +MDAAEYK+V LGLIFLKY+SD+F+EK ++L   Q   AD E
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL--KQDPYADEE  62

Query  110  DRDEYKADNIFWVPKEARWSFIQAKAKMPEIGKLLDDAMDAIEHDNESLKGVLPKNYARP  169
            D+DEY A+NIFWVPKEARW +I+ +AK PEIG+++D AM AIE++NESLKGVLPK+YARP
Sbjct  63   DQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARP  122

Query  170  ALDKQRLGELIDLIATIGLGRKENKSKDILGRVYEYFLSEFASAEGKKGGQFYTPRCVVQ  229
            ALDK++LG++IDL+ T+ +G  E++ +D+LGRVYEYF++ FASAEGK++G+FYTP  +V+
Sbjct  123  ALDKEKLGDIIDLF-TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVK  181

Query  230  TLVTMLAPYKGRVYDPCCGSGGMFVQSEKFIEEHGGKLGDISVYGQESNSTTWRLAKMNL  289
             LV M+ PYKGR+YDPCCGSGGMFVQSE+F+E H G+L+DI++YGQESN+TTW+LAKMNL
Sbjct  182  LLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNL  241

Query  290  AIRGIDSNLGQQWADTFRNDQHKDLKADYVLANPPFNDSDWGGEHLREDVRWQYGTPPSG  349
            AIRGID++LG++ ADTF+ND HK+LKADY+LANPPFN SDWG E+L +D RWQ+G PP G
Sbjct  242  AIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKG  301

Query  350  NANFAWVQHFIHHLSPTGQAGFVLANgsmssqssgegeIRKAIVEADLVDCMVALPGQLF  409
            NAN+AW++H I  L+P G AGFVLANGSMS+ + +E EIRK ++E DLV+C+V+LPGQLF
Sbjct  302  NANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLF  361

Query  410  YSTQIPVCLWFLTRDKRGTSTALSDRKYRDRRNEVLFIDARKMGAMIDRAHRELTDADIE  469
            YSTQIPVCLWF++ +K   +        ++R NE+LFIDAR +G M+ R+ +E++D DI+
Sbjct  362  YSTQIPVCLWFISNNKGQNGK-------KERENEILFIDAREIGHMVSRTLKEFSDEDIQ  414

Query  470  KIAGTYHAWRGDTSASPRLRSGSAEGRLLSGAEAPAKYADVPGFCKSATLDEIREHNYVL  529
            K+A TYHAWRG    +                     Y D++GFCK A L+E+++++Y+L
Sbjct  415  KVAQTYHAWRGTNDKP---------------------YEDIAGFCKVANLEEVKNNEYIL  453

Query  530  TPGRYVGaedveeddeafedKMQRLTQQLYAQMAEGEKLDTVIKKNLKELGF  581
            TPGRYVG  DVEED+E+FE+KM+R+T +L  Q A +  L+  I+K+L  LG+
Sbjct  454  TPGRYVGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGY  505

42) MmarC6_0039 in NC_009975


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  538 bits (2029),  Expect = 3e-154, Method: Compositional matrix adjust.
 Identities = 298/510 (59%), Positives = 399/510 (79%), Gaps = 15/510 (2%)

Query  1    MAKLGFEEDLWKAADKLRGNINASDYRNVVLGLIFLKYISDAFEERYKQLLLEVKDGADP  60
            MA +GFEE LW+AADKLRG+++A++Y+NV LGLIFLKY+SD+FEE+Y +L  +    AD 
Sbjct  4    MATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPY--ADE  61

Query  61   EDPDEYKSNIHGKSVFWVPKESRWEYIQELAKLDSIGIVIDSAMELIEKENSRLKGILPK  120
            ED DEY ++    ++FWVPKE+RW+YI++ AK   IG +ID AM  IE+EN  LKG+LPK
Sbjct  62   EDQDEYLAE----NIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPK  117

Query  121  EYANPTLDKRRLGELVDLIGRITLIDREHSQDILGRVYEYFLGQFASAEGKKGGEFYTPD  180
            EYA P+LDK +LG+++DL+         + QD+LGRVYEYF+++FASAEGK++GEFYTP 
Sbjct  118  EYARPALDKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPS  177

Query  181  CIVKLLVEMIGPYKGRVYDPCCGSGGMFVQSEKFVIEHSGRINDISIYGQESNPTTWKLA  240
             IVKLLVEMI PYKGR+YDPCCGSGGMFVQSE+FV  H GR++DI+IYGQESNPTTWKLA
Sbjct  178  SIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLA  237

Query  241  NMNLAIRGIEADI--KFGDSFHNDLHPDLKADFILANPPFNISDWGGNLLTDDKRWKYGT  298
            +MNLAIRGI+ D+  + +D+FHNDLH +LKAD+ILANPPFN SDWG + L DD RW++G 
Sbjct  238  KMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGI  297

Query  299  PPTGNANFAWVQHMIHHLSTTGIAGFVLANGSMSSNTSSEGEIRTNIINAGLVDAIVALP  358
            PP GNAN+AW++HMI  L+  G AGFVLANGSMS++   E EIR N+I+ +LV+ IV+LP
Sbjct  298  PPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLP  357

Query  359  SQLFYNTQIPACLWFV-----RRGKDVRNGETLFIDAREMGEMISRKNRSLTEEDIKKIA  413
            +QLFY+TQIP CLWF+     + GK  R+ E LFIDARE+G+M+SR  + +++EDI+K+A
Sbjct  358  GQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVA  417

Query  414  GVYHSWRNGEG--YEDVPGFCKSSDISDIEKQGFILTPGRYVGFKEEEDDGIPFEEKMES  471
              YH+WR  ++  YED++GFCK +++ ++ ++ +ILTPGRYVG+ + E+D  PFE+KME 
Sbjct  418  QTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMER  477

Query  472  LVSELKKTFEEGEILDKQIKENLKKLGYEI  501
            + SEL   F  +  L+ QI+ +L  LGY +
Sbjct  478  ITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

43) GYY_04435 in NC_015847


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  537 bits (2025),  Expect = 6e-154, Method: Compositional matrix adjust.
 Identities = 297/510 (59%), Positives = 398/510 (79%), Gaps = 15/510 (2%)

Query  1    MAKLGFEEDLWKAADKLRGNINASDYRNVVLGLIFLKYISDAFEERYKQLLLEVDEGADP  60
            MA +GFEE LW+AADKLRG+++A++Y+NV LGLIFLKY+SD+FEE+Y +L    D  AD 
Sbjct  4    MATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL--KQDPYADE  61

Query  61   EDPDEYKSNIHGKSVFWVPKESRWEYIQERAKLDSIGIVIDSAMELIEKENSRLKGILPK  120
            ED DEY ++    ++FWVPKE+RW+YI++ AK   IG +ID AM  IE+EN  LKG+LPK
Sbjct  62   EDQDEYLAE----NIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPK  117

Query  121  EYANPTLDKRRLGELVDLIGRITLIDREHSQDILGRVYEYFLGQFASAEGKKGGEFYTPD  180
            EYA P+LDK +LG+++DL+         + QD+LGRVYEYF+++FASAEGK++GEFYTP 
Sbjct  118  EYARPALDKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPS  177

Query  181  CIVKLLVEMIGPYKGRVYDPCCGSGGMFVQSEKFVMEHSGRINDISIYGQESNPTTWKLA  240
             IVKLLVEMI PYKGR+YDPCCGSGGMFVQSE+FV  H GR++DI+IYGQESNPTTWKLA
Sbjct  178  SIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLA  237

Query  241  NMNLAIRGIEADI--KFGDSFHNDLHPDLKADFILANPPFNISDWGGNLLTDDKRWKHGV  298
            +MNLAIRGI+ D+  + +D+FHNDLH +LKAD+ILANPPFN SDWG + L DD RW+ G+
Sbjct  238  KMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGI  297

Query  299  PPTGNANFAWVQHMIHHLSTTGIAGFVLANGSMSSNTSSEGEIRTDIINAGLVDAIVALP  358
            PP GNAN+AW++HMI  L+  G AGFVLANGSMS++   E EIR ++I+ +LV+ IV+LP
Sbjct  298  PPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLP  357

Query  359  SQLFYNTQIPACLWFV-----RRGKEVRKGETLFIDAREMGEMISRKNRSLTEEDIKKIA  413
            +QLFY+TQIP CLWF+     + GK  R  E LFIDARE+G+M+SR  + +++EDI+K+A
Sbjct  358  GQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVA  417

Query  414  GVYHSWRNGEG--YEDVPGFCKSSDISDIEKQGFILTPGRYVGFKEEEDDGIPFEEKMES  471
              YH+WR  ++  YED++GFCK +++ ++ ++ +ILTPGRYVG+ + E+D  PFE+KME 
Sbjct  418  QTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMER  477

Query  472  LVSELKKTFEEGEILDKRIKENLKKLGYEI  501
            + SEL   F  +  L+ +I+ +L  LGY +
Sbjct  478  ITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

44) MmarC7_0019 in NC_009637


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  536 bits (2023),  Expect = 9e-154, Method: Compositional matrix adjust.
 Identities = 298/510 (59%), Positives = 400/510 (79%), Gaps = 15/510 (2%)

Query  1    MAKLGFEEDLWKAADKLRGNINASDYRNVVLGLIFLKYISDAFEERYNQLLLEVKDGADP  60
            MA +GFEE LW+AADKLRG+++A++Y+NV LGLIFLKY+SD+FEE+Y++L  +    AD 
Sbjct  4    MATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPY--ADE  61

Query  61   EDPDEYKSNIHGKSVFWVPKESRWEYIQERAKLDSIGVVIDGAMELIEKENSRLKGILPK  120
            ED DEY ++    ++FWVPKE+RW+YI++ AK   IG +ID AM  IE+EN  LKG+LPK
Sbjct  62   EDQDEYLAE----NIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPK  117

Query  121  EYANPTLDKRRLGELVDLIGRITLIDREHSQDILGRVYEYFLGQFASAEGKKGGEFYTPD  180
            EYA P+LDK +LG+++DL+         + QD+LGRVYEYF+++FASAEGK++GEFYTP 
Sbjct  118  EYARPALDKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPS  177

Query  181  CIVKLLVEMIEPYKGRVYDPCCGSGGMFVQSEKFVIEHSGKINDISIYGQESNPTTWKLA  240
             IVKLLVEMIEPYKGR+YDPCCGSGGMFVQSE+FV  H G+++DI+IYGQESNPTTWKLA
Sbjct  178  SIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLA  237

Query  241  NMNLAIRGIEADI--KFGDSFHNDLHPDLKADFILANPPFNISDWGGNLLTDDKRWKHGV  298
            +MNLAIRGI+ D+  + +D+FHNDLH +LKAD+ILANPPFN SDWG + L DD RW+ G+
Sbjct  238  KMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGI  297

Query  299  PPTGNANFAWVQHMIHHLSTTGIAGFVLANGSMSSNTSSEGEIRTNIINAGLVDAIVALP  358
            PP GNAN+AW++HMI  L+  G AGFVLANGSMS++   E EIR N+I+ +LV+ IV+LP
Sbjct  298  PPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLP  357

Query  359  SQLFYNTQIPACLWFI-----RRGKEVRKGETLFIDAREMGEMISRKNRSLTEEDIKKIA  413
            +QLFY+TQIP CLWFI     + GK  R  E LFIDARE+G+M+SR  + +++EDI+K+A
Sbjct  358  GQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVA  417

Query  414  GVYHSWRNGEG--YEDVPGFCKSSDISDIEKQGFILTPGRYVGFKEEEDDGIPFEEKMES  471
              YH+WR  ++  YED++GFCK +++ ++ ++ +ILTPGRYVG+ + E+D  PFE+KME 
Sbjct  418  QTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMER  477

Query  472  LVSELKKTFEEGEILDKRIKENLKKLGYEI  501
            + SEL   F  +  L+ +I+ +L  LGY +
Sbjct  478  ITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

45) Syn6312_0891 in NC_019680


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  536 bits (2024),  Expect = 9e-154, Method: Compositional matrix adjust.
 Identities = 298/511 (59%), Positives = 410/511 (81%), Gaps = 13/511 (2%)

Query  13   ANLGYEAELFKAADKLRGNMEPSDYKHVVLGLIFLKHISDRFEAKQQELAAE-FPDDPEI  71
            A +G+E  L +AADKLRG+M++++YK+V LGLIFLK +SD FE K +EL  + ++D+   
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADE---  61

Query  72   LEDKDEYTAENVFWVPKESRWSYLQANAKQPTIGKLIDEAMLGLEKVNDSLKGVLPKEYA  131
             ED+DEY AEN+FWVPKE+RW Y++ NAK+P IG++ID AM+++E+ N+SLKGVLPKEYA
Sbjct  62   -EDQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYA  120

Query  132  RPALNAVMLGELIDLISNIAFGTSHDNARDVLGRVYEYFLGQFAGSEGKRGGEFYTPRSV  191
            RPAL+   LG++IDL++ +  G ++   +DVLGRVYEYF+++FA++EGK +GEFYTP S+
Sbjct  121  RPALDKEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSI  179

Query  192  VRVMVEMLQPYQGRVYDPCCGSGGMFVQSEKFVEDHAGRIGDIAIYGQESNYTTWRLCKM  251
            V+++VEM++PY+GR+YDPCCGSGGMFVQSE+FVE H GR++DIAIYGQESN TTW+L KM
Sbjct  180  VKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKM  239

Query  252  NLAVRGIDSDIRWNSEGTFHKNELPDLRANFILANPPFNISDWGGDRIREDARWKFGIPP  311
            NLA+RGID+D+   + +TFH++   +L+A++ILANPPFN SDWG +R+ +D RW+FGIPP
Sbjct  240  NLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPP  299

Query  312  VGNANYAWLQHIWHHLAPTGTAGVVLANGSMSSQQSGEGDIRQAMIEGDAIDCMIALPGQ  371
             GNANYAW++H+   LAP GTAG VLANGSMS+   +E +IR+ +IE D ++C+++LPGQ
Sbjct  300  KGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQ  359

Query  372  LFYSTQIPACLWFLAKDKSNGIARDKKLRDRRGEILFIDARKLGYMVDRTRREFSDEDVA  431
            LFYSTQIP CLWF++++K++        ++R  EILFIDAR +G MV RT +EFSDED+ 
Sbjct  360  LFYSTQIPVCLWFISNNKGQNGK-----KERENEILFIDAREIGHMVSRTLKEFSDEDIQ  414

Query  432  KIAETYHCWREGAG--YEDIPGFCKSANLEEIRGHGYVLTPGRYVGAAAAEEDDTPFAEV  489
            K+A+TYH WR   +  YEDI+GFCK ANLEE++ + Y+LTPGRYVG A  EED+ PF + 
Sbjct  415  KVAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQK  474

Query  490  MQQLTTKLGQQFQESARLESVIRENLQGLGY  520
            M+++T+ L++QF  S  LE  IR +L+GLGY
Sbjct  475  MERITSELSEQFAKSKELEDQIRKSLEGLGY  505

46) Dgeo_2017 in NC_008025


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  535 bits (2020),  Expect = 2e-153, Method: Compositional matrix adjust.
 Identities = 305/501 (61%), Positives = 407/501 (82%), Gaps = 3/501 (0%)

Query  16   FEADLFKAADKLRGNMEPSDYKHVALGLIFLKYISDAFEARHQALLAEDPRAAEDRDEYL  75
            FE  L +AADKLRG+M++++YK+VALGLIFLKY+SD+FE + + L  +     ED+DEYL
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDEYL  68

Query  76   ADNVFWVPKEARWSHLRANARRPEIGLLIDEAMRAIEKENESLKGVLPKDYARPALNKVM  135
            A+N+FWVPKEARW  +  NA++PEIG +ID AM AIE+ENESLKGVLPK+YARPAL+K  
Sbjct  69   AENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALDKEK  128

Query  136  LGELIDLISGIALGEEGDRSKDILGRVYEYFLGQFAGAEGKRGGEFYTPRSVVRVLVEML  195
            LG++IDL++ + +G+   R +D+LGRVYEYF+++FA+AEGK +GEFYTP S+V++LVEM+
Sbjct  129  LGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMI  187

Query  196  EPYHGRVYDPCCGSGGMFVQSEKFVQEHGGRIGDIAIYGQESNYTTWRLCKMNLAVRGID  255
            EPY GR+YDPCCGSGGMFVQSE+FV+ H GR++DIAIYGQESN TTW+L KMNLA+RGID
Sbjct  188  EPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRGID  247

Query  256  ADIRWNNEGSFHKDELRDLKADFILANPPFNISDWGGERLREDVRWSFGVPPVGNANYAW  315
             D+   N ++FH+D  ++LKAD+ILANPPFN SDWG ERL +D RW FG+PP GNANYAW
Sbjct  248  NDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAW  307

Query  316  LQHIHHHLAPNGTAGVVLANGSMSSNQSGEGEIRKAMVEADVVDCMVALPGQLFYSTQIP  375
            ++H+   LAPNGTAG VLANGSMS++  +E EIRK ++E D+V+C+V+LPGQLFYSTQIP
Sbjct  308  IEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIP  367

Query  376  ACLWFLARNKNPGKGLRDRRGQVLFIDARKLGVLVDRTRRELTDAEIQKIADTYHAWRGE  435
             CLWF++ NK   +G ++R  ++LFIDAR +G +V RT +E++D +IQK+A+TYHAWRG 
Sbjct  368  VCLWFISNNKGQ-NGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRGT  426

Query  436  PDAGEYQDVPGFCKSATLEEIRKHGFVLTPGRYVGAAQQEDDGEPFEEKMarlaaqwreq  495
             D   Y+D++GFCK A LEE++++ ++LTPGRYVG A+ E+D EPFE+KM R++++  EQ
Sbjct  427  NDKP-YEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQ  485

Query  496  raaaakldaaieaNLKELGYG  516
             A +  L+  I  +L  LGYG
Sbjct  486  FAKSKELEDQIRKSLEGLGYG  506

47) Mzhil_1432 in NC_015676


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  533 bits (2013),  Expect = 6e-153, Method: Compositional matrix adjust.
 Identities = 310/502 (62%), Positives = 418/502 (84%), Gaps = 4/502 (0%)

Query  11   TLEQKLWEAADKLRNNIDAAEYKHVVLGLIFIKYISDSFVELYQELEADEDSDPEDIDEY  70
             +E+KLW+AADKLR ++DAAEYK+V LGLIF+KY+SDSF E Y+EL  D  +D ED DEY
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDEY  67

Query  71   IARNIFWVPKESRWENIVADARNSTIGTTIDNAMRQLMKNNESLTGILPTNYGRPELDKH  130
            +A NIFWVPKE+RW+ I  +A+++ IG  ID+AM  + ++NESL G+LP +Y+RP LDK+
Sbjct  68   LAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALDKE  127

Query  131  KLGELVDIIHSIEFDESKESERDVLGRVYEYFLGNFASAEGKKGGEFYTPSCVVKTLVEM  190
            KLG+++D++ ++  +++    +DVLGRVYEYF+++FASAEGK++GEFYTPS +VK LVEM
Sbjct  128  KLGDIIDLF-TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEM  186

Query  191  IEPFNGRVYDPCHGSGGMFVQSRRFVEQHGGTDQDIYVYGQESNPTTWKLCKMNLALHGI  250
            IEP++GR+YDPC GSGGMFVQS RFVE+H G  +DI +YGQESNPTTWKL KMNLA++GI
Sbjct  187  IEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRGI  246

Query  251  DNDV--RMGDTFREDKHPNLKVDYILANPPFNISDWGGENLQEDVRWKYGVPPKGNANYA  308
            DND+  R +DTF++D H  LK DYILANPPFN SDWG E L +D RW++G+PPKGNANYA
Sbjct  247  DNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYA  306

Query  309  WIQHMIYHLKPTGIAGFVLANGSLSSNTSGEGEIRKNILEDDLVDCIIAMPGQLFYNTGI  368
            WI+HMI  L P G AGFVLANGS+S++  +E EIRKN++E+DLV+CI+++PGQLFY+T I
Sbjct  307  WIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQI  366

Query  369  PCCLWFVTRDKKNHRFRDRRGEVLLIDARNMGVMVDRTHRELTNEDIKKIADTYHAWRGE  428
            P CLWF++ +K ++  ++R  E+L+IDAR++G MV RT +E+++EDI+K+A+TYHAWRG 
Sbjct  367  PVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRGT  426

Query  429  PDTGEYEDVAGFCKSATLDDIRKHDYVLTPGRYVGFAdeeeddepfeekmeRLTSQLSEQ  488
             D   YED+AGFCK A L+++++++Y+LTPGRYVG+AD EED+EPFE+KMER+TS+LSEQ
Sbjct  427  NDKP-YEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQ  485

Query  489  FKKSNELEDKIRDNLREIGYEL  510
            F KS+ELED+IR +L  +GY +
Sbjct  486  FAKSKELEDQIRKSLEGLGYGV  507

48) XOO_3262 in NC_007705


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  533 bits (2012),  Expect = 8e-153, Method: Compositional matrix adjust.
 Identities = 297/509 (59%), Positives = 407/509 (80%), Gaps = 7/509 (1%)

Query  96   VSELDYADKLWKTADKLRGNMEPSDYKHVVLGLIFLKYISDAFEARHaallaedppaaed  155
            ++ +++ +KLW++ADKLRG+M++++YK+V LGLIFLKY+SD+FE +   L  +  +  ED
Sbjct  4    MATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEED  63

Query  156  KDEYLAENIFWVPKQARWSHLQANAKQSSIGTLIDDALRAIEKDNESLKGVLPKDYARPA  215
            +DEYLAENIFWVPK+ARW  ++ NAK++ IG +ID A+ AIE++NESLKGVLPK+YARPA
Sbjct  64   QDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPA  123

Query  216  LNKVMLGELIDLISGIALNDKGGKPKDVLGRVYEYFLGQFAGAEGKRGGEFYTPRSVVHT  275
            L+K  LG++IDL++ + + D  ++ +DVLGRVYEYF+++FA+AEGK +GEFYTP S+V  
Sbjct  124  LDKEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKL  182

Query  276  LVEMIEPYKGRIYDPCCGSGGMFVQSEKFVNEHGGRIGDIAIYGQESNYTTWRLCKMNLA  335
            LVEMIEPYKGRIYDPCCGSGGMFVQSE+FV+ H GR++DIAIYGQESN TTW+L KMNLA
Sbjct  183  LVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLA  242

Query  336  VRGIDSDIRWNNEGSFHKDELRDLKADFILANPPFNISDWGGERLRDDVRWAFGPPPVGN  395
            +RGID+D+   N ++FH+D  ++LKAD+ILANPPFN SDWG ERL DD RW FG PP GN
Sbjct  243  IRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGN  302

Query  396  ANYAWLQHIVHHLSPHGFAGVVLANGSMSSQQSGEGDIRKSMIEAGVVDCMVALPGQLFY  455
            ANYAW++H++  L+P+G AG VLANGSMS+   +E +IRK++IE ++V+C+V+LPGQLFY
Sbjct  303  ANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFY  362

Query  456  STQIPACLWILAKDRSNGLVLQSKLRDRRGEILFIDARNMGTLVDRTRRELSDAEVARIA  515
            STQIP CLW+++++++     Q+  ++R  EILFIDAR++G +V RT +E+SD ++ ++A
Sbjct  363  STQIPVCLWFISNNKG-----QNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVA  417

Query  516  ATYHAWRGEQDAGDYADIAGFCKSAPLDEVRKHGHVLTPGRYVGAAAQEDDGEPFAQKMQ  575
             TYHAWRG +D   Y DIAGFCK A L+EV+++  +LTPGRYVG A  E+D EPF QKM+
Sbjct  418  QTYHAWRGTNDKP-YEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKME  476

Query  576  RLATLWREQQQEAAKLDAAIEMNLKHLGF  604
            R+++   EQ   +  L+  I  +L  LG+
Sbjct  477  RITSELSEQFAKSKELEDQIRKSLEGLGY  505

49) hsdM-1 in NC_006834


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  533 bits (2012),  Expect = 9e-153, Method: Compositional matrix adjust.
 Identities = 297/509 (59%), Positives = 407/509 (80%), Gaps = 7/509 (1%)

Query  137  VSELDYADKLWKTADKLRGNMEPSDYKHVVLGLIFLKYISDAFEARHaallaedppaaed  196
            ++ +++ +KLW++ADKLRG+M++++YK+V LGLIFLKY+SD+FE +   L  +  +  ED
Sbjct  4    MATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEED  63

Query  197  KDEYLAENIFWVPKQARWSHLQANAKQSSIGTLIDDALRAIEKDNESLKGVLPKDYARPA  256
            +DEYLAENIFWVPK+ARW  ++ NAK++ IG +ID A+ AIE++NESLKGVLPK+YARPA
Sbjct  64   QDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPA  123

Query  257  LNKVMLGELIDLISGIALNDKGGKPKDVLGRVYEYFLGQFAGAEGKRGGEFYTPRSVVHT  316
            L+K  LG++IDL++ + + D  ++ +DVLGRVYEYF+++FA+AEGK +GEFYTP S+V  
Sbjct  124  LDKEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKL  182

Query  317  LVEMIEPYKGRIYDPCCGSGGMFVQSEKFVNEHGGRIGDIAIYGQESNYTTWRLCKMNLA  376
            LVEMIEPYKGRIYDPCCGSGGMFVQSE+FV+ H GR++DIAIYGQESN TTW+L KMNLA
Sbjct  183  LVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLA  242

Query  377  VRGIDSDIRWNNEGSFHKDELRDLKADFILANPPFNISDWGGERLRDDVRWAFGPPPVGN  436
            +RGID+D+   N ++FH+D  ++LKAD+ILANPPFN SDWG ERL DD RW FG PP GN
Sbjct  243  IRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGN  302

Query  437  ANYAWLQHIVHHLSPHGFAGVVLANGSMSSQQSGEGDIRKSMIEAGVVDCMVALPGQLFY  496
            ANYAW++H++  L+P+G AG VLANGSMS+   +E +IRK++IE ++V+C+V+LPGQLFY
Sbjct  303  ANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFY  362

Query  497  STQIPACLWILAKDRSNGLVLQSKLRDRRGEILFIDARNMGTLVDRTRRELSDAEVARIA  556
            STQIP CLW+++++++     Q+  ++R  EILFIDAR++G +V RT +E+SD ++ ++A
Sbjct  363  STQIPVCLWFISNNKG-----QNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVA  417

Query  557  ATYHAWRGEQDAGDYADIAGFCKSAPLDEVRKHGHVLTPGRYVGAAAQEDDGEPFAQKMQ  616
             TYHAWRG +D   Y DIAGFCK A L+EV+++  +LTPGRYVG A  E+D EPF QKM+
Sbjct  418  QTYHAWRGTNDKP-YEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKME  476

Query  617  RLATLWREQQQEAAKLDAAIEMNLKHLGF  645
            R+++   EQ   +  L+  I  +L  LG+
Sbjct  477  RITSELSEQFAKSKELEDQIRKSLEGLGY  505

50) K649_10265 in NC_021081


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  532 bits (2007),  Expect = 2e-152, Method: Compositional matrix adjust.
 Identities = 317/524 (61%), Positives = 408/524 (78%), Gaps = 24/524 (4%)

Query  16   ATVGYEAELWKMADTLRGSMDAAEYKHVVLGLIFLKYISDAFEELHRKLEAERAQGADPE  75
            AT+G+E  LW+ AD LRGSMDAAEYK+V LGLIFLKY+SD+FEE    L  +    AD E
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPY--ADEE  62

Query  76   DPDEYRAQNIFWVPPEARWAHLKAQARQPTIGQLVDNAMACIERDNPALKGVLPKEYARP  135
            D DEY A+NIFWVP EARW  ++ +A++P IGQ++D+AM  IE +N +LKGVLPKEYARP
Sbjct  63   DQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARP  122

Query  136  ALDKTRLGQLIDLISNIKVGDEEARAKDVLGRVYEYFLSQFASAEGKKGGEFYTPRCVVK  195
            ALDK +LG++IDL++ +KVGD E+R +DVLGRVYEYF+++FASAEGK++GEFYTP  +VK
Sbjct  123  ALDKEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVK  181

Query  196  LLVEMLEPYHGRVYDPCCGSAGMFVQSVEFIRAHATGNGNGGRAKADISIYGQESNYTTW  255
            LLVEM+EPY GR+YDPCCGS+GMFVQS  F+  H       GR   DI+IYGQESN TTW
Sbjct  182  LLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQ------GRL-DDIAIYGQESNPTTW  234

Query  256  RLAKMNLAIRGIEGQIA--HGDTFHNDKFPDLKADFILANPPFNVSDWGGERLRDDKRWQ  313
            +LAKMNLAIRGI+ +++  ++DTFHND   +LKAD+ILANPPFN SDWG ERL DD RWQ
Sbjct  235  KLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQ  294

Query  314  YGVPPVGNANFAWVQHIVYHLSPTGVAGFVLANGSMSSNQSGEGEIRKNLIEAGLVDCMV  373
            +G+PP GNAN+AW++H++  L+P G AGFVLANGSMS++  +E EIRKNLIE +LV+C+V
Sbjct  295  FGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIV  354

Query  374  ALPGQLFYSTQIPACLWFLARDRSSRPYgaagaapggKFRDRRGEILFIDARKMGRMVDR  433
            +LPGQLFYSTQIP CLWF++ +++             K ++R  EILFIDAR +G+MV R
Sbjct  355  TLPGQLFYSTQIPVCLWFISNNKGQNG----------K-KERENEILFIDAREIGHMVSR  403

Query  434  THRELTDEDIAKIASTYHAWRGEKDAGEYQDVPGFCKSATLDEVRKHGYVLTPGRYVGAE  493
            T +E++DEDI K+A TYHAWRG +D   Y+D++GFCK A L+EV+++ Y+LTPGRYVG  
Sbjct  404  TLKEFSDEDIQKVAQTYHAWRGTNDKP-YEDIAGFCKVANLEEVKNNEYILTPGRYVGLA  462

Query  494  AQEDDSEPFEEKMARLVaqlreqqaeaarlDKAIAANLKELGYG  537
              E+D EPFE+KM R+ ++L EQ A +  L+  I  +L  LGYG
Sbjct  463  DVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYG  506

51) Mrub_2453 in NC_013946


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  532 bits (2007),  Expect = 2e-152, Method: Compositional matrix adjust.
 Identities = 317/524 (61%), Positives = 408/524 (78%), Gaps = 24/524 (4%)

Query  16   ATVGYEAELWKMADTLRGSMDAAEYKHVVLGLIFLKYISDAFEELHRKLEAERAQGADPE  75
            AT+G+E  LW+ AD LRGSMDAAEYK+V LGLIFLKY+SD+FEE    L  +    AD E
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPY--ADEE  62

Query  76   DPDEYRAQNIFWVPPEARWAHLKAQARQPTIGQLVDNAMACIERDNPALKGVLPKEYARP  135
            D DEY A+NIFWVP EARW  ++ +A++P IGQ++D+AM  IE +N +LKGVLPKEYARP
Sbjct  63   DQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARP  122

Query  136  ALDKTRLGQLIDLISNIKVGDEEARAKDVLGRVYEYFLSQFASAEGKKGGEFYTPRCVVK  195
            ALDK +LG++IDL++ +KVGD E+R +DVLGRVYEYF+++FASAEGK++GEFYTP  +VK
Sbjct  123  ALDKEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVK  181

Query  196  LLVEMLEPYHGRVYDPCCGSAGMFVQSVEFIRAHATGNGNGGRAKADISIYGQESNYTTW  255
            LLVEM+EPY GR+YDPCCGS+GMFVQS  F+  H       GR   DI+IYGQESN TTW
Sbjct  182  LLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQ------GRL-DDIAIYGQESNPTTW  234

Query  256  RLAKMNLAIRGIEGQIA--HGDTFHNDKFPDLKADFILANPPFNVSDWGGERLRDDKRWQ  313
            +LAKMNLAIRGI+ +++  ++DTFHND   +LKAD+ILANPPFN SDWG ERL DD RWQ
Sbjct  235  KLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQ  294

Query  314  YGVPPVGNANFAWVQHIVYHLSPTGVAGFVLANGSMSSNQSGEGEIRKNLIEAGLVDCMV  373
            +G+PP GNAN+AW++H++  L+P G AGFVLANGSMS++  +E EIRKNLIE +LV+C+V
Sbjct  295  FGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIV  354

Query  374  ALPGQLFYSTQIPACLWFLARDRSSRPYgaagaapggKFRDRRGEILFIDARKMGRMVDR  433
            +LPGQLFYSTQIP CLWF++ +++             K ++R  EILFIDAR +G+MV R
Sbjct  355  TLPGQLFYSTQIPVCLWFISNNKGQNG----------K-KERENEILFIDAREIGHMVSR  403

Query  434  THRELTDEDIAKIASTYHAWRGEKDAGEYQDVPGFCKSATLDEVRKHGYVLTPGRYVGAE  493
            T +E++DEDI K+A TYHAWRG +D   Y+D++GFCK A L+EV+++ Y+LTPGRYVG  
Sbjct  404  TLKEFSDEDIQKVAQTYHAWRGTNDKP-YEDIAGFCKVANLEEVKNNEYILTPGRYVGLA  462

Query  494  AQEDDSEPFEEKMARLVaqlreqqaeaarlDKAIAANLKELGYG  537
              E+D EPFE+KM R+ ++L EQ A +  L+  I  +L  LGYG
Sbjct  463  DVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYG  506

52) Cabther_B0498 in NC_016025


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  529 bits (1998),  Expect = 8e-152, Method: Compositional matrix adjust.
 Identities = 312/509 (62%), Positives = 403/509 (80%), Gaps = 22/509 (4%)

Query  2    ADALRGSMDAAEYKHVVLGLIFLKYISDAFEEQHARLEAERDQGADPEDPDEYRAENIFW  61
            AD LRGSMDAAEYK+V LGLIFLKY+SD+FEE+   L   +D  AD ED DEY AENIFW
Sbjct  17   ADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELK--QDPYADEEDQDEYLAENIFW  74

Query  62   VPPEARWAHLKAQAKQPTIGQLVDDAMAAIERDNPALKGVLPKDYARPALDKQRLGQLID  121
            VP EARW  ++ +AK+P IGQ++D AM AIE +N +LKGVLPK+YARPALDK++LG++ID
Sbjct  75   VPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALDKEKLGDIID  134

Query  122  LISNIKVGDEESRAKDVLGRVYEYFLSQFASAEGKKGGEFYTPRCVVKLLVEMLEPYRGR  181
            L++ +KVGD ESR +DVLGRVYEYF+++FASAEGK++GEFYTP  +VKLLVEM+EPY+GR
Sbjct  135  LFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGR  193

Query  182  VYDPCCGSAGMFVQSVEFIRAHASgngnggkakaDISIYGQESNYTTWRLAKMNLAIRGI  241
            +YDPCCGS+GMFVQS  F+  H +  +       DI+IYGQESN TTW+LAKMNLAIRGI
Sbjct  194  IYDPCCGSGGMFVQSERFVEKHQGRLD-------DIAIYGQESNPTTWKLAKMNLAIRGI  246

Query  242  DGQIA--HGDTFHNDRFQDLKADYILANPPFNVSDWGGERLRDDKRWKYGVPPAGNANFA  299
            D +++  ++DTFHND  ++LKADYILANPPFN SDWG ERL DD RW++G+PP GNAN+A
Sbjct  247  DNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYA  306

Query  300  WVQHIIHHLAPAGVAGFVLANGSMSSNQSGEGEIRKNIIEADLVDCMVALPGQLFYSTQI  359
            W++H+I  LAP G AGFVLANGSMS++  +E EIRKN+IE DLV+C+V+LPGQLFYSTQI
Sbjct  307  WIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQI  366

Query  360  PACLWFLARDRRGGSPTRPMRDRRGEILFIDARKMGRMVDRTHRELTDDDIARIANTYHA  419
            P CLWF++ ++         ++R  EILFIDAR +G+MV RT +E++D+DI ++A+TYHA
Sbjct  367  PVCLWFISNNK----GQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHA  422

Query  420  WRTVGARHDSPLPEYRDIPSFCKSATLEEVRKHGYVLTPGRYVGAAEQEEDDEPFDQKMQ  479
            WR    +       Y DI++FCK A LEEV+++ Y+LTPGRYVG A+ EED+EPF+QKM+
Sbjct  423  WRGTNDKP------YEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKME  476

Query  480  RLVAQLREQQaeaakldaaiaaNLKELGF  508
            R+ ++L EQ A +  L+  I  +L  LG+
Sbjct  477  RITSELSEQFAKSKELEDQIRKSLEGLGY  505

53) PGA2_c07360 in NC_018286


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  528 bits (1992),  Expect = 3e-151, Method: Compositional matrix adjust.
 Identities = 291/495 (59%), Positives = 390/495 (79%), Gaps = 10/495 (2%)

Query  23   MRGGLEPSEYKHVALGLIFLKYISEAFQAMHDQLAKDDFADPEDPEEYLAENIFWVPETA  82
            +RG+++++EYK+VALGLIFLKY+S++F+   ++L +D +AD ED +EYLAENIFWVP  A
Sbjct  20   LRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDEYLAENIFWVPKEA  79

Query  83   RWSFIQDNARSENIGKIIDDAMEAIEAEPTNETLKGVLPKNYARPTLDKTMLGELVDLFS  142
            RW +I+DNA+  +IG+IID AM AIE E  NE+LKGVLPK+YARP+LDK  LG+++DLF+
Sbjct  80   RWQYINDNAKKPEIGQIIDKAMIAIENE--NESLKGVLPKEYARPALDKEKLGDIIDLFT  137

Query  143  NVKMHDSADRARDLLGRVYEYFISGFASAEGKRGGEFFTPRSVVRTLVEMLEPYQGRVYD  202
              K+ D+  R +D+LGRVYEYFI+ FASAEGK +GEF+TP S+V+ LVEM+EPY+GR+YD
Sbjct  138  -FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYD  196

Query  203  PCCGSGGMFIQSEKFIEDHGGNPLNLSVYGQEINHTTWRLAKMNLAVHGIDADIAWDSAG  262
            PCCGSGGMF+QSE+F+E H G   ++++YGQE N TTW+LAKMNLA++GID D++  +A+
Sbjct  197  PCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRGIDNDLGERNAD  256

Query  263  SFHKDAHPGLKADYILANPPFNISDWGGERLLEDDRWQYGPPPKGNANFAWIQHIIHHLA  322
            +FH+D H GLKADYILANPPFN SDWG ERLL+D RWQ+G PPKGNAN+AWI+H+I  LA
Sbjct  257  TFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAWIEHMISKLA  316

Query  323  PRGHAGVVLANGSMSSQTSGEGEIRKRLIEEDRVDCMVALPGQLFYSTQIPVCLWILSRD  382
            P G AG VLANGSMS+   +E EIRK LIE+D V+C+V+LPGQLFYSTQIPVCLW++S +
Sbjct  317  PNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNN  376

Query  383  KSANGLRDRRGEVLFIDARNMGHMVDRVRREFSDEDIERIAGTYRRWRAKPETLEAKGWE  442
            K+ NG ++R  E+LFIDAR++GHMV R  +EFSDEDI+++A TY+ WR+  +        
Sbjct  377  KGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRGTNDK-------  429

Query  443  AYADEPGFCKSEGLETIRKFDHVLTPGRYVGAAEDEGDGVPFEEKFGDLVSKWETQSSES  502
            +Y D +GFCK   LE +++ + +LTPGRYVG A+ E D  PFE+K   + S    Q + S
Sbjct  430  PYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQFAKS  489

Query  503  RKLDDKIGALLKTVA  517
            + L+D+I   L  ++
Sbjct  490  KELEDQIRKSLEGLG  504

54) GLX_22350 in NC_016027


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  522 bits (1971),  Expect = 1e-149, Method: Compositional matrix adjust.
 Identities = 290/515 (57%), Positives = 391/515 (76%), Gaps = 17/515 (3%)

Query  19   AIEATLWAAADKLRGNMDAAEYKHVALGLIFLKYISDRFDERRAQAEADPEERDLVEERD  78
            ++E  LW AADKLRG+MDAAEYK+VALGLIFLKY+SD F+E+  +   DP   +  E++D
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADE--EDQD  65

Query  79   LYLGDNVFWVPAEARWTFLKENATSVDPSIGSLIDRAMIALETENPSLKGVLTKNYARPE  138
             YL++N+FWVP EARW ++++NA    P IG +ID+AMIA+E EN SLKGVL K+YARP 
Sbjct  66   EYLAENIFWVPKEARWQYINDNAKK--PEIGQIIDKAMIAIENENESLKGVLPKEYARPA  123

Query  139  LDQIRLGEVVKLFSDLAFKDAHHGQDMLGRVYEYFLGQFAIAEGKRGGQFYTAGCIVRLL  198
            LD+ +LG+++ LF+        + QD+LGRVYEYF+++FA AEGK +G+FYT++ IV+LL
Sbjct  124  LDKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL  183

Query  199  VEMIQPFKGRVYDPCCGSGGMFVQSERFVEAHSTQYVDPVKAKRELSIFGQESNPTTWRL  258
            VEMI+P+KGR+YDPCCGSGGMFVQSERFVE H  +         +++I+GQESNPTTW+L
Sbjct  184  VEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRL-------DDIAIYGQESNPTTWKL  236

Query  259  AKMNLAIRGIEADLGPKWADSFLEDLHPGLKADFVLANPPFNDSDWGGERARTGQSWPYG  318
            AKMNLAIRGI+ DLG + AD+F +DLH GLKAD++LANPPFN SDWG ER   +  W +G
Sbjct  237  AKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFG  296

Query  319  VPPAGNANFAWVQLFIRHLAPHGVAGFVLANGSLSSQQSGEGDIRRAIIEADLVDCIVSL  378
            +PP GNAN+AW++  I  LAP+G AGFVLANGS+S+   +E +IR+ +IE DLV+CIV+L
Sbjct  297  IPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTL  356

Query  379  PGQLFSTTQIPVCLWFLARDKSNGLVKDKTLRDRRRETLFIDARGLGTMQSRTLKVLSEA  438
            PGQLF +TQIPVCLWF++ +K+     ++  ++R  E LFIDAR +G M SRTLK +S+ 
Sbjct  357  PGQLFYSTQIPVCLWFISNNKG-----QNGKKERENEILFIDAREIGHMVSRTLKEFSDE  411

Query  439  DIAKVADTYHAWREKGGR-YVDEPGFSSMATTAEIAGKCYVLTPGRYVGTVAADEEDETF  497
            DI KVA+TYHAWR   ++ Y D +GF  +A   E+  + Y+LTPGRYVG    +E++E F
Sbjct  412  DIQKVAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPF  471

Query  498  DAKMQRLTATLREQMAEGAKLDERIRSALAGVGYG  532
            + KM+R+T+ L EQ A +  L+++IR +L G+GYG
Sbjct  472  EQKMERITSELSEQFAKSKELEDQIRKSLEGLGYG  506

55) Thein_1578 in NC_015681


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  521 bits (1966),  Expect = 3e-149, Method: Compositional matrix adjust.
 Identities = 306/519 (59%), Positives = 411/519 (80%), Gaps = 19/519 (3%)

Query  45   ALLGFEAKLWEAANALRGSMDAAEYKHVVLGLIFLKYISDAFEEHRKRLEQEPYADPEDP  104
            A +GFE KLW+AA+ LRGSMDAAEYK+V LGLIFLKY+SD+FEE    L Q+PYAD ED 
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ  64

Query  105  DEYRAANVFWVPPEARWERLKQNARRPEIGQIVDEAMEALERENPSLKGVLPKDYARPAL  164
            DEY A N+FWVP EARW+ +++NA++PEIGQI+D AM A+E EN SLKGVLPK+YARPAL
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  165  DKQRLGQLIDLITNIRLEGEEARGKDVLGRVYEYFLGQFASAEGRKGGEFYTPASVVKLL  224
            DK++LG++IDL+T +++ + E+R +DVLGRVYEYF+++FASAEG+++GEFYTP+S+VKLL
Sbjct  125  DKEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL  183

Query  225  VEMLEPFEGRVYDPCCGSGGMFVQSVRFVEAHATgngnggrararISIYGQELNYTTWRL  284
            VEM+EP+ GR+YDPCCGSGGMFVQS RFVE H             I+IYGQE N TTW+L
Sbjct  184  VEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQG-------RLDDIAIYGQESNPTTWKL  236

Query  285  CKMNLAIRGIEGKIEQ--GDTFLNDRFPDLKADYILANPPFNMKNWGAEQLRHDKRWKYG  342
             KMNLAIRGI+  + +  +DTF ND   +LKADYILANPPFN  +WG E+L +D RW++G
Sbjct  237  AKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFG  296

Query  343  LPPARNANFAWLQHMIHHLSPVGYAGVVLANGSLSSNQSNEGEIRKNIVEADLVDCIVAL  402
            +PP  NAN+AW++HMI  L+P G AG VLANGS+S++  +E EIRKN++E DLV+CIV+L
Sbjct  297  IPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTL  356

Query  403  PDKLFYTTQIPACLWFLTRDKSGRPPAGQKKRLRDRRGEVLFIDARKMGVMVDRVHRELT  462
            P++LFY+TQIP CLWF++ +K      GQ+ + ++R  E+LFIDAR +G MV R  +E++
Sbjct  357  PGQLFYSTQIPVCLWFISNNK------GQNGK-KERENEILFIDAREIGHMVSRTLKEFS  409

Query  463  DEEIEKIARTYHAWRAEDGAGEYKDIPGFCISATIEKIRREHDYILTPGRYVGVeiqeed  522
            DE+I+K+A+TYHAWR+ ++   Y DI+GFC  A +E + ++++YILTPGRYVG+   EED
Sbjct  410  DEDIQKVAQTYHAWRGTNDKP-YEDIAGFCKVANLEEV-KNNEYILTPGRYVGLADVEED  467

Query  523  deifeeKMKRLVAELEAQFSEGAKLEEAIKRNLRELGFG  561
            +E FE+KM R+ +EL  QF+ +  LE+ I+++L  LG+G
Sbjct  468  EEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYG  506

56) Veis_3128 in NC_008786


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  518 bits (1956),  Expect = 2e-148, Method: Compositional matrix adjust.
 Identities = 293/510 (58%), Positives = 406/510 (80%), Gaps = 7/510 (1%)

Query  9    GNLGFEAELFKTADKLRGNMEPSDYKHVALGLIFLKYISDAFEARHaqllaedaaaaedk  68
            + +GFE  L ++ADKLRG+M++++YK+VALGLIFLKY+SD+FE +  +L  +  A  ED+
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ  64

Query  69   deyladNIFWVPREARWSHLQANAKQSSIGTLIDDAMRAIERDNESLKGVLPKDYARPAL  128
            DEYLA+NIFWVP+EARW  ++ NAK++ IG +ID AM AIE +NESLKGVLPK+YARPAL
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  129  NKVMLGELIDLISGIALNEGNDKSKDVLGRVYEYFLGQFAGAEGKRGGEFYTPRSVVRTL  188
            +K  LG++IDL++ + + + + + +DVLGRVYEYF+++FA+AEGK +GEFYTP S+V+ L
Sbjct  125  DKEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL  183

Query  189  VEMLEPYTGRVYDPCCGSGGMFVQSEKFVAEHGGRIGDIAIYGQESNYTTWRLAKMNLAV  248
            VEM+EPY GR+YDPCCGSGGMFVQSE+FV  H GR++DIAIYGQESN TTW+LAKMNLA+
Sbjct  184  VEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAI  243

Query  249  RGIDSDIKWNNEGSFHKDELRDLKADFILANPPFNISDWGGGRLREDVRWAFGAPPAGNA  308
            RGID+D+   N ++FH+D  ++LKAD+ILANPPFN SDWG  RL +D RW FG PP GNA
Sbjct  244  RGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNA  303

Query  309  NYAWLQHIFHHLSPHGFAGVVLANGSMSSQQSGEGDIRKAMIEANVVDCMVALPGQLFYS  368
            NYAW++H++  L+P+G AG VLANGSMS+   +E +IRK +IE ++V+C+V+LPGQLFYS
Sbjct  304  NYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYS  363

Query  369  TQIPACLWILSKDRSNGLVKKTKLRDRRGEVLFIDARKMGVLVDRTRRELTNEEIGRIAA  428
            TQIP CLW++S+++++        ++R  E+LFIDAR +G +V RT +E+++E+I ++A 
Sbjct  364  TQIPVCLWFISNNKGQ-----NGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQ  418

Query  429  TYHAWRGEADAGEYSDIPGFCKSATLDAIRKHDHVLTPGRYVGAEAQEDDGEAFADKMQR  488
            TYHAWRG  D   Y DI+GFCK A L+ +++++ +LTPGRYVG    E+D E+F +KM+R
Sbjct  419  TYHAWRGTNDKP-YEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMER  477

Query  489  LTTQLFEKTKRGAELDAVICEKLGALGYGV  518
            +T++L E+  ++ EL+  I   L +LGYGV
Sbjct  478  ITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

57) HMPREF0659_A6123 in NC_014370


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  517 bits (1952),  Expect = 4e-148, Method: Compositional matrix adjust.
 Identities = 290/503 (58%), Positives = 394/503 (79%), Gaps = 9/503 (1%)

Query  7    ADIGFEKEIWKAADLLRGNLDASEYKSVVLGLIFLKYISDKFETKYQELVNNGEGFEEDR  66
            A IGFE  +W+AAD LRG++DA+EYK+V LGLIFLKY+SD FE KY+EL ++  + EED+
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ  64

Query  67   DEYMADNIFFVPQEARWSVVAKAAHTPEIGTIIDNAMRLIEKENLRLKGILPKNFARPEL  126
            DEY+A+NIF VP+EARW  +   A  PEIG IID+AM  IE+EN  LKG+LPK++ARP L
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  127  DKRRLGDVVDLFTNIQMKEHGDSKDILGRTYEYCLSKFAEAEGKLAGEFYTPACIVQTLV  186
            DK +LGD++DLFT      ++  +D+LGR YEY ++KFA AEGK AGEFYTP+ IV+ LV
Sbjct  125  DKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLV  184

Query  187  EVLKPYHGRVYDPACGSGGMFVQSAKFIERHQGNIKDISVYGQDSNPTTWKMAQMNLAIR  246
            E++ PY GR+YDP CGSGGMFVQS +F+E+HQG + DI++YGQ+SNPTTWK+A+MNLAIR
Sbjct  185  EMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIR  244

Query  247  GIEADLGKFNADTFFDDQHPTLKADFIMANPPFNLSDWGADKLQDDVRWKFGIPPSGNAN  306
            GI+ DLG  NADTF +D H  LKAD+I+ANPPFN SDWG ++L DD RW+FGIPP GNAN
Sbjct  245  GIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNAN  304

Query  307  FAWLQHMIHHLSPKGKIGMVLANGSLSSQTGGEGTIRENIIKADLIEGIVALPSQLFYTT  366
            +AW++HMI  L+P+G  G VLANGS+S+   +E  IR N+I  DL+E IV+LP+QLFY+T
Sbjct  305  YAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYST  364

Query  367  GIPVSLWFLNREKKQKDK------ILFVDARNMGTMVTRKLRELQEADIRKIADTFDKY-  419
             IPV LWF++ +K Q++K      ILF+DAR++G MV+R L+E+ + DI+K+A+T++   
Sbjct  365  QIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWR  424

Query  420  --SDGTLENEKGFCAVVALGDVAKQDYILTPGRYVGIAEQEDDGIPFQEKMDKLTTELSD  477
              +D   E+  GFC V  L +V +++YILTPGRYVG+A+ E+D  PF++KM+++T+ELS+
Sbjct  425  GTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSE  484

Query  478  LFAQSHDLEDEIRKQLASIGFTI  500
             FA+S +LED+IRK L ++G+ +
Sbjct  485  QFAKSKELEDQIRKSLEGLGYGV  507

58) hsdM-1 in NC_002932


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  516 bits (1947),  Expect = 1e-147, Method: Compositional matrix adjust.
 Identities = 303/517 (59%), Positives = 406/517 (79%), Gaps = 16/517 (3%)

Query  13   GNLGFEAELFKAADKLRGNMEPSDYKHVALGLIFLKYISDAFeakhkallaedalaaedk  72
            + +GFE  L +AADKLRG+M++++YK+VALGLIFLKY+SD+FE K   L  +     ED+
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ  64

Query  73   deyladNVFWVPKEARWSHLQANAKQPTIGTLIDDAMRAIEKDNASLKGVLPKDYARPAL  132
            DEYLA+N+FWVPKEARW  ++ NAK+P IG +ID AM AIE++N SLKGVLPK+YARPAL
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  133  NKVMLGELIDLISGIGHLLPSPSGRGAGGEGQSFDILGRVYEYFLGQFAGAEGKRGGEFY  192
            +K  LG++IDL++           + ++ E++  D+LGRVYEYF+++FA+AEGK +GEFY
Sbjct  125  DKEKLGDIIDLFTF----------KVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFY  174

Query  193  TPRSVVRVLVEMLEPYSGRVYDPCCGSGGMFVQSEKFVQEHGGRIGDIAIYGQESNYTAW  252
            TP S+V++LVEM+EPY GR+YDPCCGSGGMFVQSE+FV+ H GR++DIAIYGQESN T+W
Sbjct  175  TPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTW  234

Query  253  RLAKMNLAVRGIDADIRWNNEGSFHKDELRDLKADYILANPPFNISDWGGDRLREDVRWQ  312
            +LAKMNLA+RGID D+   N ++FH+D  ++LKADYILANPPFN SDWG +RL +D RWQ
Sbjct  235  KLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQ  294

Query  313  FGVPPVGNANYAWLQHIYWHLAPNGTAGVVLANGSMSSNQSGEGEIRRAMLEADAVDCMV  372
            FG+PP GNANYAW++H+   LAPNGTAG VLANGSMS++  +E EIR+ ++E D V+C+V
Sbjct  295  FGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIV  354

Query  373  ALPGQLFYSTQIPACLWFLARNKNPANGKTGGLRDRRGHVLFIDARKMGVLVDRTRRELS  432
            +LPGQLFYSTQIP CLWF++ NK        G ++R  ++LFIDAR +G +V RT +E+S
Sbjct  355  TLPGQLFYSTQIPVCLWFISNNKGQ-----NGKKERENEILFIDAREIGHMVSRTLKEFS  409

Query  433  DEEIQKIARTYHAWRGEPDAGDYADVAGFCKSATLDEIRKHGHVLTPGRYVGAAEVEDDG  492
            DE+IQK+A+TYHAWRG  D   Y D+AGFCK A L+E++++  +LTPGRYVG A+VE+D 
Sbjct  410  DEDIQKVAQTYHAWRGTNDKP-YEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDE  468

Query  493  EPFEEKMARLAAQWRQQRDEAAKLDAAIEANLKELGF  529
            EPFE+KM R++++  +Q   +  L+  I  +L  LG+
Sbjct  469  EPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGY  505

59) SFBM_0018 in NC_015913


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  515 bits (1944),  Expect = 2e-147, Method: Compositional matrix adjust.
 Identities = 288/503 (58%), Positives = 397/503 (79%), Gaps = 10/503 (1%)

Query  9    ASISFEQQIWSAADILRGNMDAAEYKHVVLGLIFLKYISDSFERRYQELLRdd-ddvedk  67
            A+I+FE+++W AAD LRG+MDAAEYK+V LGLIFLKY+SDSFE +Y+EL +D   D ED+
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ  64

Query  68   dAYTEVNVFFVPPEARWSVIQASAHKEEIGIVIDNAMRAIEKENRRLKDILPKNYSREEL  127
            D Y   N+F VP EARW  I+ +A K EIG +ID+AM AIE+EN  LK++LPK+Y+R  L
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  128  DKRRLGNVVDLFTNIHMIDHGRDKDILGRTYEYCLSKFAEQEGKRAGEFYTPSCIVRTLV  187
            DK +LG+++DLFT      ++R +D+LGR YEY ++KFA  EGK AGEFYTPS IV+ LV
Sbjct  125  DKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLV  184

Query  188  EILEPFNGRVYDPCCGSGGMFVQSAKFVEHHSGNINNLSIFGQDSNPTTRKMAIMNLAIR  247
            E++EP++GR+YDPCCGSGGMFVQS +FVE H G +++++I+GQ+SNPTT+K+A MNLAIR
Sbjct  185  EMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIR  244

Query  248  GIEGDIGPHSADTFYNDLHKTLKADFILSNPPFNLSNWNDGSLNDDVRWSYGLPPSGNAN  307
            GI+ D+G ++ADTF NDLHK LKAD+IL+NPPFN S+W +  L DD RW +G+PP GNAN
Sbjct  245  GIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNAN  304

Query  308  FSWLQHMIHHLSPRGKIGMVLANGSLSSKSGGEGDIRKGIIEDDLVEGIVAMPSQLFYTT  367
            ++W++HMI  L+P G  G VLANGS+S+ + +E +IRK +IE+DLVE IV++P+QLFY+T
Sbjct  305  YAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYST  364

Query  368  QIPVSLWIINRDKSQKGKT------LFIDARDMGKMVNRKLREMTEEDIKKISDTF---R  418
            QIPV LW+I+ +K+Q+GK       LFIDAR++G MV+R L+E ++EDI+K+++T+   R
Sbjct  365  QIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWR  424

Query  419  AFEEGTLEDVKGFCAVATTEKISKEDYILTPGRYVGIKDREDDSEGFDDKMKRLTGELRE  478
            + ++   ED+ GFC VA  E + +++YILTPGRYVG+ D E+D E F++KM R+T+EL E
Sbjct  425  GTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSE  484

Query  479  MFNKSHELEEEIRKRLGSIGYEI  501
             F KS ELE++IRK L ++GY +
Sbjct  485  QFAKSKELEDQIRKSLEGLGYGV  507

60) rplK in NC_017294


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  515 bits (1944),  Expect = 2e-147, Method: Compositional matrix adjust.
 Identities = 288/503 (58%), Positives = 397/503 (79%), Gaps = 10/503 (1%)

Query  9    ASISFEQQIWSAADILRGNMDAAEYKHVVLGLIFLKYISDSFERRYQELLRdd-ddvedk  67
            A+I+FE+++W AAD LRG+MDAAEYK+V LGLIFLKY+SDSFE +Y+EL +D   D ED+
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ  64

Query  68   dAYTEVNVFFVPPEARWSVIQASAHKEEIGIVIDNAMRAIEKENRRLKDILPKNYSREEL  127
            D Y   N+F VP EARW  I+ +A K EIG +ID+AM AIE+EN  LK++LPK+Y+R  L
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  128  DKRRLGNVVDLFTNIHMIDHGRDKDILGRTYEYCLSKFAEQEGKRAGEFYTPSCIVRTLV  187
            DK +LG+++DLFT      ++R +D+LGR YEY ++KFA  EGK AGEFYTPS IV+ LV
Sbjct  125  DKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLV  184

Query  188  EILEPFNGRVYDPCCGSGGMFVQSAKFVEHHSGNINNLSIFGQDSNPTTRKMAIMNLAIR  247
            E++EP++GR+YDPCCGSGGMFVQS +FVE H G +++++I+GQ+SNPTT+K+A MNLAIR
Sbjct  185  EMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIR  244

Query  248  GIEGDIGPHSADTFYNDLHKTLKADFILSNPPFNLSNWNDGSLNDDVRWSYGLPPSGNAN  307
            GI+ D+G ++ADTF NDLHK LKAD+IL+NPPFN S+W +  L DD RW +G+PP GNAN
Sbjct  245  GIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNAN  304

Query  308  FSWLQHMIHHLSPRGKIGMVLANGSLSSKSGGEGDIRKGIIEDDLVEGIVAMPSQLFYTT  367
            ++W++HMI  L+P G  G VLANGS+S+ + +E +IRK +IE+DLVE IV++P+QLFY+T
Sbjct  305  YAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYST  364

Query  368  QIPVSLWIINRDKSQKGKT------LFIDARDMGKMVNRKLREMTEEDIKKISDTF---R  418
            QIPV LW+I+ +K+Q+GK       LFIDAR++G MV+R L+E ++EDI+K+++T+   R
Sbjct  365  QIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWR  424

Query  419  AFEEGTLEDVKGFCAVATTEKISKEDYILTPGRYVGIKDREDDSEGFDDKMKRLTGELRE  478
            + ++   ED+ GFC VA  E + +++YILTPGRYVG+ D E+D E F++KM R+T+EL E
Sbjct  425  GTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSE  484

Query  479  MFNKSHELEEEIRKRLGSIGYEI  501
             F KS ELE++IRK L ++GY +
Sbjct  485  QFAKSKELEDQIRKSLEGLGYGV  507

61) SYN_00494 in NC_007759


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  511 bits (1929),  Expect = 3e-146, Method: Compositional matrix adjust.
 Identities = 291/505 (58%), Positives = 395/505 (79%), Gaps = 7/505 (1%)

Query  8    TEAFEKTLFKAADKLRKNMDAAEYKHIVLGLIFLKYISDSFEALYEKIKEGKGDFEGADP  67
            T +FE  L +AADKLR +MDAAEYK++ LGLIFLKY+SDSFE  YE +K++   +  AD 
Sbjct  6    TIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDP--Y--ADE  61

Query  68   EDPDEYRAENVFFVPQAARWSYLHSRAKLPSIGKDVDDAMEAIEKENQTLKGILPQVYAR  127
            ED DEY AEN+F VP+ ARW Y++  AK P IG+ +D AM AIE+EN++LKG+LP+ YAR
Sbjct  62   EDQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYAR  121

Query  128  PNLDKAALGGLIDLVGNIALGTEAAKAKDLLGRVYEYFLGEFANAEGKKGGQFYTPKSIV  187
            P LDK  LG++IDL   + +G   ++ +D+LGRVYEYF++ FA+AEGK++G+FYTP SIV
Sbjct  122  PALDKEKLGDIIDLF-TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIV  180

Query  188  RLMVEMIEPFKGRVYDPCCGSGGMFIMSERFVENHQGKVDDISIFGQESNQTTYRLCRMN  247
            +L+VEMIEP+KGR+YDPCCGSGGMF+ SERFVE+HQG++DDI+I+GQESN TT +L +MN
Sbjct  181  KLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMN  240

Query  248  LAIRGIDGSQVKWNTEGSFLNDVHKDLKSDFILANPPFNDSDWSGQLLQSDPRWKYGVPQ  307
            LAIRGID     +N++ +F ND+HK+LK+D+ILANPPFN SDW+ + L  D RW++G+P 
Sbjct  241  LAIRGIDNDLGERNAD-TFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPP  299

Query  308  AANANFAWLQHMIYHLSPKGIMACVLANGSLSSQTNNEGEIRKSLVENDLVDCIVALPKQ  367
             +NAN+AW++HMI  L+P+G  + VLANGS+S+  ++E EIRK+L+E+DLV+CIV+LP Q
Sbjct  300  KGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQ  359

Query  368  LFYNTGIPACLWFLSRKRAGNGDRKRSSEILFIDASEEGFMEDRTHRAFSDDDIAKIAGT  427
            LFY+T IP CLWF+S +++ NG + R +EILFIDA E G M  RT + FSD+DI K+A T
Sbjct  360  LFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQT  419

Query  428  YHEWRKQGGK-YEDVRGFCKSADIEEITKHNFVLMPGRYVGIKDEEDDGIPFEDKMAGYL  486
            YH WR   +K YED+ GFCK A++EE+ +++++L PGRYVG+ D E+D  PFE+KM    
Sbjct  420  YHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERIT  479

Query  487  SELSIQMAEEKRLDEEIKKQLGNIG  511
            SELS Q A  K L+++I+K L  +G
Sbjct  480  SELSEQFAKSKELEDQIRKSLEGLG  504

62) XF2742 in NC_002488


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  511 bits (1927),  Expect = 4e-146, Method: Compositional matrix adjust.
 Identities = 284/470 (61%), Positives = 387/470 (83%), Gaps = 3/470 (0%)

Query  18   FEAELFKAADKLRGNMEPSDYKHVALGLIFLKYISDAFEAKHSallaedaqaaedkdeYL  77
            FE  L +AADKLRG+M++++YK+VALGLIFLKY+SD+FE K   L  +     ED+DEYL
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDEYL  68

Query  78   AHNVFWVPKQARWSHLKANAKQSTIGTLIDEAMRDIEKDNPSLKHVLPKDYARPALNKVM  137
            A+N+FWVPK+ARW  ++ NAK++ IG +ID AM  IE++N SLK VLPK+YARPAL+K  
Sbjct  69   AENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALDKEK  128

Query  138  LGELIDLISGIALNEEGARSKDILGRVYEYFLGQFAGAEGKRGGEFYTPRSVVRVLVQML  197
            LG++IDL++ + + +  +R +D+LGRVYEYF+++FA+AEGK +GEFYTP S+V++LV+M+
Sbjct  129  LGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMI  187

Query  198  EPYSGRVYDPCCGSGGMFVQSEKFVLEHGGRIGDIAIYGQESNYTTWRLAKMNLAVRGID  257
            EPY GR+YDPCCGSGGMFVQSE+FV  H GR++DIAIYGQESN TTW+LAKMNLA+RGID
Sbjct  188  EPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRGID  247

Query  258  SDIRWNNEGSFHNDALRDLKADYILANPPFNISDWGGDRLREDVRWKFGVPPAGNANYAW  317
            +D+   N ++FHND  ++LKADYILANPPFN SDWG +RL +D RW+FG+PP GNANYAW
Sbjct  248  NDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAW  307

Query  318  LQHIYHHLAPNGTAGVVLANGSMSSNHSGEGEIRTHMIEADIVDCMIAMPGQLFYSTQIP  377
            ++H+   LAPNGTAG VLANGSMS++  +E EIR ++IE D+V+C++++PGQLFYSTQIP
Sbjct  308  IEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIP  367

Query  378  ACLWFLARNKNPGKGLRDRRGQVLLMDARALGVLVDRTRRELTDEHIQQIADTYHAWRGE  437
             CLWF++ NK   +G ++R  ++L++DAR +G +V RT +E++DE+IQ++A+TYHAWRG 
Sbjct  368  VCLWFISNNKGQ-NGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRGT  426

Query  438  QGAAAYADVAGFCKSATLEDIRKQGYVLTPGRYVGAVEREDDGEPFPQKM  487
            ++  +Y D+AGFCK A LE+++++ Y+LTPGRYVG  + E+D EPF QKM
Sbjct  427  ND-KPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKM  475

63) Ethha_0469 in NC_014828


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  510 bits (1925),  Expect = 5e-146, Method: Compositional matrix adjust.
 Identities = 291/504 (58%), Positives = 391/504 (78%), Gaps = 11/504 (2%)

Query  7    AETGFEKQIWDAACILRGNMDAAEYKHVILGLIFLKYISDRFEFRYNQLVKDKNGDEEDR  66
            A  GFE ++W+AA  LRG+MDAAEYK+V LGLIFLKY+SD FE +Y++L +D  +DEED+
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ  64

Query  67   DEYTSQNVFYVPPSARWESITAQAHMPEIGKIIDNAMDSIERENKSLKGVLPKTFARPEL  126
            DEY ++N+F VP  ARW+ I  +A  PEIG+IID+AM +IE EN SLKGVLPK +ARP L
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  127  DKRRLGEVVDLFTNITIAETGG-KMDMLGRTYEYCLGRFAEQEGKLAGEFYTPASVVRTL  185
            DK +LG+++DLFT + +++T + K D+LGR YEY +++FA  EGK AGEFYTP+S+V+ L
Sbjct  125  DKEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL  183

Query  186  VAVIKPFDGRVYDPCCGSGGMFVQSAEFVKAHAGNIRNLSVYGQDSNPTTWKLCRMNLAI  245
            V +I P+ GR+YDPCCGSGGMFVQS  FV  H G + ++++YGQ+SNPTTWKL +MNLAI
Sbjct  184  VEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAI  243

Query  246  HGIDADLGEAAADTFFNDRHPTMKADYILANPPFNLSGWGADKLADDQRWKYGQPPAGNA  305
            +GID DLGE  ADTF ND H  +KADYILANPPFN S+WG ++L DD RW++G PP GNA
Sbjct  244  RGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNA  303

Query  306  NFAWMQHMIFHTSAKGRIGMVLANGSLASQNGGEGAIRKAIVEDDLVEGIIAMPPQLFYT  365
            N+AW++HMI   +++G  G VLANGS+++   +E  IRK ++E+DLVE I+++P QLFY+
Sbjct  304  NYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYS  363

Query  366  TQIPVSLWFLDRAKKQPGK------MLFIDARHMGTMVSRRLREMTKEDISKISDTFEAF  419
            TQIPV LWF+   K Q GK      +LFIDAR++G MVSR L+E + EDI K+++T++A 
Sbjct  364  TQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAW  423

Query  420  ---ENGTLEDEAGFCAAVPVEEISKQDYILTPGRYVGLAAEEDDCEPFEEKMDRLTSELS  476
               ++   ED AGFC    +EE+ +++YILTPGRYVGLA  E+D EPFE+KM+R+TSELS
Sbjct  424  RGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELS  483

Query  477  EMFKRSHELEEEIRKRLGAIGYDI  500
            E F +S ELE++IRK L ++GY++
Sbjct  484  EQFAKSKELEDQIRKSLEGLGYGV  507

64) Shel_17670 in NC_013165


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  510 bits (1923),  Expect = 7e-146, Method: Compositional matrix adjust.
 Identities = 297/502 (60%), Positives = 396/502 (79%), Gaps = 9/502 (1%)

Query  10   AEIGFEQQIWSAADKLRGNMDASEYKNVVLGLIFLKYISDKFEQRYQELVdegegfeedr  69
            A IGFE+++W AADKLRG+MDA+EYKNV LGLIFLKY+SD FE++Y+EL ++  + EED+
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ  64

Query  70   deYTYKNIFFVPPEARWGVIAGAAHTPEIGKAIDNAMRLIEAENDKLKNILPKNFARQEL  129
            DEY   NIF VP EARW  I + A  PEIG+ ID+AM  IE EN+ LK +LPK++AR  L
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  130  DKRRLGEVVDLFTNVQMAEKGDTRDILGRTYEYCLSKFAEAEGKNAGEFYTPACVVRTLV  189
            DK +LG+++DLFT       +  +D+LGR YEY ++KFA AEGKNAGEFYTP+ +V+ LV
Sbjct  125  DKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLV  184

Query  190  EIIEPYRGRVYDPCCGSGGMFVQSAQFVKNHQGRIDDLSVYGQESNPTTWKMAMMNLAIR  249
            E+IEPY+GR+YDPCCGSGGMFVQS +FV +HQGR+DD+++YGQESNPTTWK+A MNLAIR
Sbjct  185  EMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIR  244

Query  250  GIDADLGTFNADTFFNDIHKNERFDFVLANPPFNMSDWGGEQLKEDPRWDFGTPPAGNAN  309
            GID DLG  NADTF ND+HK  + D++LANPPFN SDWG E+L +D RW+FG PP GNAN
Sbjct  245  GIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNAN  304

Query  310  FAWMQHMIHHLADDGRMGMVLANGSLSSQTNNEGAIRQKIVDAGLVEGIVAMPDRLFYST  369
            +AW++HMI  LA +G  G VLANGS+S+  ++E  IR+++++ +LVE IV++P++LFYST
Sbjct  305  YAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYST  364

Query  370  GIPVSLWIISKE------SNRQRRTLFVDAREMGTMVSRRLREFTDEDIAKVAETFDAFR  423
             IPV LW+IS++       +R+   LF+DARE+G MVSR L+EF+DEDI KVA+T++A R
Sbjct  365  QIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWR  424

Query  424  KGE---LEDEKGFCAAVDIEDIAKQDYILTPGRYVGIKDEEDDGEPFEEKMERLTGELAK  480
              +    ED  GFC   ++E++ +++YILTPGRYVG+ D E+D EPFE+KMER+T+EL+ 
Sbjct  425  GTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSE  484

Query  481  CFDESNRLQQQIRKNLEAIGYG  502
             F  S+ L++QIRK+LE++GYG
Sbjct  485  QFAKSKELEDQIRKSLEGLGYG  506

65) hsdM in NC_021499


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  510 bits (1924),  Expect = 7e-146, Method: Compositional matrix adjust.
 Identities = 298/524 (57%), Positives = 406/524 (78%), Gaps = 22/524 (4%)

Query  13   GNLGFEAELFKAADKLRGNMEPSDYKHVALGLIFLKYISDAFEAKRkallaedaqaaedk  72
            + +GFE  L +AADKLRG+M++++YK+VALGLIFLKY+SD+FE K   L  +     ED+
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ  64

Query  73   deYLADNVFWVPKEARWSHLQANAKLPTIGTLIDDAMRSIEKDNESLKGVLPKDYARPAL  132
            DEYLA+N+FWVPKEARW  ++ NAK P IG +ID AM +IE++NESLKGVLPK+YARPAL
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  133  NKVMLGELIDLISGIALNEEGDRSKDILGRVYEYFLGQFAGAEGKRGGEFYTPRSVVRVL  192
            +K  LG++IDL++ + + +   R +D+LGRVYEYF+++FA+AEGK +GEFYTP S+V++L
Sbjct  125  DKEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL  183

Query  193  VEMLEPLPDPARGVAGRVYDPCCGSGGMFVQSEKFVQEHGGRIGDIAIYGQESNYVTWRL  252
            VEM+EP         GR+YDPCCGSGGMFVQSE+FV+ H GR++DIAIYGQESN  TW+L
Sbjct  184  VEMIEPYK-------GRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKL  236

Query  253  AKMNLAVRGIDSKIFWNNEGSFHKDEFAAQRGGDGAPMKADFILANPPFNISDWGGDRLR  312
            AKMNLA+RGID+ +   N ++FH+D    ++G     +KAD+ILANPPFN SDWG +RL 
Sbjct  237  AKMNLAIRGIDNDLGERNADTFHND---LHKG-----LKADYILANPPFNASDWGQERLL  288

Query  313  EDVRWKFGVPPVGNANYAWLQHIYHHLAPNGTAGVVLANGSMSSNQSGEGEIRKAMIEAD  372
            +D RW+FG+PP GNANYAW++H+   LAPNGTAG VLANGSMS++  +E EIRK +IE D
Sbjct  289  DDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQD  348

Query  373  AVDCMVALPGQLFYSTQIPACLWFLARNKNPASGKAGGLRDRRGQVLFIDARKLGVLVDR  432
             V+C+V+LPGQLFYSTQIP CLWF++ NK        G ++R  ++LFIDAR +G +V R
Sbjct  349  LVECIVTLPGQLFYSTQIPVCLWFISNNKGQ-----NGKKERENEILFIDAREIGHMVSR  403

Query  433  TRRELTDEEIQRIADTYHAWRGEEGAGEYADVAGFCKSASIEDIRKYGHVLTPGRYVGAA  492
            T +E++DE+IQ++A+TYHAWRG ++   Y D+AGFCK A++E++++   +LTPGRYVG A
Sbjct  404  TLKEFSDEDIQKVAQTYHAWRGTNDKP-YEDIAGFCKVANLEEVKNNEYILTPGRYVGLA  462

Query  493  EQEDDGEPFDEKMLRLSAQWREHRAAAAKLDTAIEANLKELGYG  536
            + E+D EPF++KM R++++  E+ A +  L+  I  +L  LGYG
Sbjct  463  DVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYG  506

66) BHWA1_00436 in NC_012225


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  509 bits (1920),  Expect = 1e-145, Method: Compositional matrix adjust.
 Identities = 285/495 (58%), Positives = 393/495 (80%), Gaps = 9/495 (1%)

Query  14   LWAASDKLRGNIDASEYKHVILGLVFLKYISDKFEIRYNELVKEGFDMQDDAEAYREKNI  73
            LW A+DKLRG++DA+EYK+V LGL+FLKY+SD FE +Y+EL ++ +  ++D + Y   NI
Sbjct  13   LWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDEYLAENI  72

Query  74   FYLPEESRFDYISSHARSDEIGAIIDEAMLKIEENNKKLKGILPKNYSRPELDKRRLGEI  133
            F +P E+R +YI+ +A+  EIG IID AM+ IE++N  LKG+LPK+Y+RP LDK +LG+I
Sbjct  73   FWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALDKEKLGDI  132

Query  134  IDLFS-nikianknkkdiLGNVYEYFLSQFATAEGKRGGEFYTPSPIVKLLVEILEPYKG  192
            IDLF+ ++  ++  K+D+LG VYEYF+++FA+AEGK +GEFYTPS+IVKLLVE++EPYKG
Sbjct  133  IDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKG  192

Query  193  RIYDPCCGSGGMFVQSAKFLEAHSESVNNISVYGQESNPTTWKLCNMNVAIHGIDGNLGK  252
            RIYDPCCGSGGMFVQS +F+E H   +++I++YGQESNPTTWKL +MN+AI+GID +LG 
Sbjct  193  RIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRGIDNDLGE  252

Query  253  NNADTFFEDLHKNLKADYILANPPFNMSDWGADALKDDYRWKWGIPPNGNANYGWLSHIA  312
             NADTF +DLHK LKADYILANPPFN SDWG + L DDYRW+ GIPP+GNANY+W+ H+ 
Sbjct  253  RNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAWIEHMI  312

Query  313  SKLSESGKAGVVLANGSLSTQTSGEGLIRQNMIKDDLIECIISLPTQLFISTQIPVSLWF  372
            SKL+ +G AG VLANGS+ST   +E  IR+N+I +DL+ECI++LP QLF STQIPV LWF
Sbjct  313  SKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWF  372

Query  373  LNKDKKQKG------HILFIDARNYGRMESRVQRVLDDDDIEAIAKTVHSWQ--KGKGYK  424
            ++++K Q+G      +ILFIDAR+ G+M SR  + + D+DI+ +A+T H+W+  ++K Y 
Sbjct  373  ISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRGTNDKPYE  432

Query  425  DIKGYCKSASLEEISKEDYILTTGRYVGLEEEDNKEEDFDAKMKVLTEELGECFKESRKL  484
            DI G+CK A+LEE+ +++YILT GRYVGL + ++ EE F+ KM  +T EL+E F  S+ L
Sbjct  433  DIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQFAKSKEL  492

Query  485  EKIIKDNLEEIGYSI  499
            E  I+ +LE +GY++
Sbjct  493  EDQIRKSLEGLGYGV  507

67) F7308_0300 in NC_015696


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  508 bits (1915),  Expect = 3e-145, Method: Compositional matrix adjust.
 Identities = 289/496 (59%), Positives = 386/496 (78%), Gaps = 12/496 (2%)

Query  11   SIEVTLWKAADKLRKNIDAAEYKHVVLGLVFLKYISDSFEERYAELQSEEWADPEDKDEY  70
            ++E  LW+AADKLR ++DAAEYK+V LGL+FLKY+SDSFEE+Y EL+ +  AD ED+DEY
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDEY  67

Query  71   LESNIFFVPTKARWSYLLANAKLPEIGKLVDEAMDEIERENNSLKGVLPKVYARDNLNST  130
            L  NIF VP  ARW Y+  NAK PEIG+++D AM  IE EN+SLKGVLPK YAR  L+  
Sbjct  68   LAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALDKE  127

Query  131  TLGELIDIIGNISIGDTQSRSADVLGHVFEYFLGEFALAEGKQGGQFYTPKSVVELLVKM  190
             LG++ID++  + +GDT+SR  DVLG+V+EYF++ FA AEGK++G+FYTP S+V LLV M
Sbjct  128  KLGDIIDLF-TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEM  186

Query  191  LEPYKGRVFDPCCGSGGMFVQSEKFVESHQGQINDISIYGQESNQTTWRLCKMNLAIRGI  250
            +EPYKGR++DPCCGSGGMFVQSE+FVE HQG+++DI+IYGQESN TTW+L KMNLAIRGI
Sbjct  187  IEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRGI  246

Query  251  DSSQVKWNSEGSFLNDAHKDLKADYIIANPPFNISDWSGELLRNDARWQYGTPPAGNANY  310
            D+    +N++ +F ND HK+LKADYI+ANPPFN SDW+ E L +D RWQ+G PP GNANY
Sbjct  247  DNDLGERNAD-TFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANY  305

Query  311  AWIQHFLYHLAPTGVAGFVLAKGALTSNTSGEGDIRKALVEANLVDCIVNLPAKLFLNTQ  370
            AWI+H +  LAP G AGFVLA+G+++++  +E +IRK L+E +LV+CIV LP++LF +TQ
Sbjct  306  AWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQ  365

Query  371  IPASLWFIKRGR-------KIKDILFIDARNKGHLINRRTKEFSDDDITEIAQTYHNWKV  423
            IP  LWFI   +       + ++ILFIDAR+ GH+++R  KEFSD+DI  +AQTYH W+ 
Sbjct  366  IPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRG  425

Query  424  --DKNYEDIKGFCKSASYEEVAELNYVLTPGRYVGLEEVEDDFN-FTERFTSLKTQLAEQ  480
              DK YEDI GFCK A+ EEV + +Y+LTPGRYVGL +VE+D + F ++   + ++L+EQ
Sbjct  426  TNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQ  485

Query  481  MAQEEVLNQRIMDNLA  496
             A+   L+++I  +L 
Sbjct  486  FAKSKELEDQIRKSLE  501

68) AL1_19050 in NC_021030


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  504 bits (1902),  Expect = 3e-144, Method: Compositional matrix adjust.
 Identities = 292/518 (57%), Positives = 404/518 (78%), Gaps = 26/518 (5%)

Query  7    ADIGFEKEIWKAADKMRGNIDASEYKSVVLGLIFLKYISDKFEAKYQQLVAEGEGFEEDK  66
            A IGFE  +W+AADK+RG++DA+EYK+V LGLIFLKY+SD FE KY++L  +  + EED+
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ  64

Query  67   DEYLSNKNEKGSYDPVFYVPAEARWEAIAIHAHSPEIGTIIDNAMRAIEKENKRLKDILP  126
            DEYL+        + +F VP EARW+ I  +A  PEIG IID+AM AIE+EN  LK++LP
Sbjct  65   DEYLA--------ENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLP  116

Query  127  KNFARPELDKRRLGEVVDLFTNIRMHEHGDSKDILGRAYEYCLSKFAEAEGKLAGEFYTP  186
            K++ARP LDK +LG+++DLFT    + ++  +D+LGR YEY ++KFA AEGK AGEFYTP
Sbjct  117  KEYARPALDKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTP  176

Query  187  ACIVKTLVNVLQPYKGRVYDPCCGSGGMFVQSAQFIENHSGNINNISVYGQDSNPTTWKM  246
            + IVK LV++++PYKGR+YDPCCGSGGMFVQS +F+E+H G +++I++YGQ+SNPTTWK+
Sbjct  177  SSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKL  236

Query  247  AQMNLAIRGIEADLGQYNADTFFNDCHPTLKADFVMANPPFNLSDWGADKLADDVRWKYG  306
            A+MNLAIRGI+ DLG+ NADTF ND H  LKAD+++ANPPFN SDWG ++L DD RW++G
Sbjct  237  AKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFG  296

Query  307  TPPNGNANFAWIQHIIHHLAPTGRAGVVLANgslssqsggegeIRRKLVEADLVDCVIAM  366
             PP+GNAN+AWI+H+I  LAP G AG VLANGS+S+ + +E EIR++L+E DLV+C++++
Sbjct  297  IPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTL  356

Query  367  PPQLFYTTQIPVSIWFFNKNKQQKGKT------LFIDARNLGTMVTRKLRELTDSDTVDP  420
            P QLFY+TQIPV +WF+++NK Q+GK       LFIDAR++G MV+R L+E++D      
Sbjct  357  PGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDE-----  411

Query  421  IKRGDIQRIADTYNAYVAGK---LENEKGFCVVTSVAEIAKQDFILTPGRYVGIAAQEED  477
                DIQ++A+TY+A  + +    E+  GFC V+++ E+ ++++ILTPGRYVG+A  EED
Sbjct  412  ----DIQKVAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEED  467

Query  478  TEPFEEKMTRLTGELSGLFEKSHELEAEIKKQLGSIGY  515
             EPFE+KM R+T+ELS  F KS ELE +I+K L ++GY
Sbjct  468  EEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGY  505

69) Alfi_1804 in NC_018011


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  504 bits (1900),  Expect = 5e-144, Method: Compositional matrix adjust.
 Identities = 292/518 (57%), Positives = 403/518 (78%), Gaps = 26/518 (5%)

Query  7    ADIGFEKEIWKAADKMRGNIDASEYKSVVLGLIFLKYISDKFEAKYQQLVAEGEGFEEDK  66
            A IGFE  +W+AADK+RG++DA+EYK+V LGLIFLKY+SD FE KY++L  +  + EED+
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ  64

Query  67   DEYLSNKNEKGSYDPVFYVPAEARWEAIAIHAHSPEIGTIIDNAMRAIEKENKRLKDILP  126
            DEYL+        + +F VP EARW+ I  +A  PEIG IID+AM AIE+EN  LK++LP
Sbjct  65   DEYLA--------ENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLP  116

Query  127  KNFARPELDKRRLGEVVDLFTNIRMHEHGDSKDILGRAYEYCLSKFAEAEGKLAGEFYTP  186
            K++ARP LDK +LG+++DLFT    + ++  +D+LGR YEY ++KFA AEGK AGEFYTP
Sbjct  117  KEYARPALDKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTP  176

Query  187  ACIVKTLVNVLQPYKGRVYDPCCGSGGMFVQSAQFIENHSGNINNISVYGQDSNPTTWKM  246
            + IVK LV++++PYKGR+YDPCCGSGGMFVQS +F+E+H G +++I++YGQ+SNPTTWK+
Sbjct  177  SSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKL  236

Query  247  AQMNLAIRGIEADLGRYNADTFFNDCHPTLKADFVMANPPFNLSDWGADKLADDVRWKYG  306
            A+MNLAIRGI+ DLG  NADTF ND H  LKAD+++ANPPFN SDWG ++L DD RW++G
Sbjct  237  AKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFG  296

Query  307  TPPNGNANFAWIQHIIHHLAPTGRAGVVLANgslssqsggegeIRRKLVEADLVDCVIAM  366
             PP+GNAN+AWI+H+I  LAP G AG VLANGS+S+ + +E EIR++L+E DLV+C++++
Sbjct  297  IPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTL  356

Query  367  PPQLFYTTQIPVSIWFFNKNKQQKGKT------LFIDARNLGTMVTRKLRELTDSDTVDP  420
            P QLFY+TQIPV +WF+++NK Q+GK       LFIDAR++G MV+R L+E++D      
Sbjct  357  PGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDE-----  411

Query  421  IKRGDIQRIADTYNAYVAGK---LENEKGFCAVTSVAEIAKQDFILTPGRYVGIAAQEED  477
                DIQ++A+TY+A  + +    E+  GFC V+++ E+ ++++ILTPGRYVG+A  EED
Sbjct  412  ----DIQKVAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEED  467

Query  478  TEPFEEKMTRLTGELSGLFEKSHELEAEIKKQLGSIGY  515
             EPFE+KM R+T+ELS  F KS ELE +I+K L ++GY
Sbjct  468  EEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGY  505

70) Glaag_3862 in NC_015497


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  504 bits (1900),  Expect = 5e-144, Method: Compositional matrix adjust.
 Identities = 287/528 (55%), Positives = 401/528 (76%), Gaps = 24/528 (4%)

Query  7    ISPTTSFEQNLWDTANKLRGSVESSEYKHVVLSLIFLKFISDKFEAQRKSLVEQGMSDYV  66
            + +T +FE++LW++A+KLRGS++++EYK+V L+LIFLK++SD FE +   L ++  +D  
Sbjct  3    LMATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEE  62

Query  67   EQIEFYAKDNVFFLPEQARWSYIQQQMKQDDIAVKIDTALHTVEKNNPSLKGALPDNYFS  126
            +Q E+ A +N+F +P +ARW YI+++ K+ +I+  ID A+ ++E++N SLKG LP +Y +
Sbjct  63   DQDEYLA-ENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEY-A  120

Query  127  RLGLVSSKLASLIDTINNIDTYTSKSSANECGSDDIKSEEDLVGRVYEYFLGKFAASEGK  186
            R +L   KL+ +ID       +T K +  E         +D++GRVYEYF++KFA++EGK
Sbjct  121  RPALDKEKLGDIIDL------FTFKVGDTES------RKQDVLGRVYEYFIAKFASAEGK  168

Query  187  GGGEFYTPKSIVSLIAEMIEPYKGKIYDPCCGSGGMFVQSLKFIDSHKGNKKDISIYGQE  246
             +GEFYTP SIV L+ EMIEPYKG+IYDPCCGSGGMFVQS +F++ H+G   DI+IYGQE
Sbjct  169  NAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQE  228

Query  247  YTNTTYKLAKMNLAVRGISANLGEVAGDTFFKDQHPDLKADFIMANPPFNQKQWRGENEL  306
               TT KLAKMNLA+RGI  +LGE  +DTF +D H +LKAD+I+ANPPFN  +W G++ L
Sbjct  229  SNPTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDW-GQERL  287

Query  307  VDDPRWSGFDVPPTGNANYAWIMHMISKLSEHGTAGFVLANGSMSSNTSGEGEIRKKIIE  366
            +DD RW  F++PP GNANYAWI HMISKL+ +GTAGFVLANGSMS++  +E EIRK++IE
Sbjct  288  LDDYRWQ-FGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIE  346

Query  367  KDLVDCMIALPGQLFYTTQIPVCLWFISKNKKAVDASEDFAKRRNRQGETLFIDAREMGS  426
            +DLV+C+++LPGQLFY+TQIPVCLWFIS+NK           +++R+ E LFIDARE+G 
Sbjct  347  QDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQ-------NGKKERENEILFIDAREIGH  399

Query  427  MVSRVNKELTTDDIAHIAQTYHAWRGEDKDGAYEDIAGFCKSATLDDIKANDYVLTPGRY  486
            MVSR  KE++ +DI  +AQTYHAWRG + D +YEDIAGFCK A L+++K N+Y+LTPGRY
Sbjct  400  MVSRTLKEFSDEDIQKVAQTYHAWRGTN-DKPYEDIAGFCKVANLEEVKNNEYILTPGRY  458

Query  487  VGAADIADDGIPFEEKMAELSQTLFKQMAEGQELDKNITQNLEVMGYG  534
            VG AD+ +D  PFE+KM  ++  L  Q A ++EL+ +I ++LE +GYG
Sbjct  459  VGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYG  506

71) R2APBS1_3877 in NC_020541


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  499 bits (1883),  Expect = 1e-142, Method: Compositional matrix adjust.
 Identities = 279/536 (53%), Positives = 398/536 (75%), Gaps = 35/536 (6%)

Query  2    NIELRKTLWAAADKLRSSMDAAEYKHLVLGLIFVKYISDAFDELRSGLRVALADPESELY  61
             I +   LW AADKLR+SMDAAEYK++ LGLIF+KY+SD+F+E    L+           
Sbjct  6    TIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELK-----------  54

Query  62   LEDPVMRAAAEEDRDYYTAANVFWVPEQARWENLRAHAKQANIGRRIDAALDAIEADNPR  121
             +DP    A EED+D Y A N+FWVP +ARW+ +  +AK+++IG+ ID A+ AIE +N  
Sbjct  55   -QDPY---ADEEDQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENES  110

Query  122  LKGILDKRFGRAQLEPGKLGELVDLVSTIGFGAGGKAKDVLGEVYEYFLGQFASAEGKKG  181
            LKG+L K ++R+ L+  KLG+++DL +    ++ ++ +DVLG VYEYF+++FASAEGK++
Sbjct  111  LKGVLPKEYARPALDKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNA  170

Query  182  GQFYTPASVVEVLVEILGPHQGKVYDPCCGSGGMFVQSEKFVESHGGRFGDLSIYGQEAN  241
            G+FYTP+S+V +LVE++ P +G++YDPCCGSGGMFVQSE+FVE H GR++D++IYGQE+N
Sbjct  171  GEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESN  230

Query  242  PTTWRLVAMNLAIRGMDFNLGKEPADTFHRDQHPDLRADYVLANPPFNISDWGGERLADD  301
            PTTW+L  MNLAIRG+D +LG   ADTFH D H +L+ADY+LANPPFN SDWG ERL DD
Sbjct  231  PTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDD  290

Query  302  RRWQFGTPPAGNANYAWLQHILHHLSARGQAGVVLANGSMSSNQNSEGAIRQAMVERDVV  361
             RWQFG PP GNANYAW++H++  L++ G AG VLANGSMS++ + E  IR+ ++E+D+V
Sbjct  291  YRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLV  350

Query  362  EVMVALPPQLFFNTQIPACLWFLAKDKTKNG-RDRRGEVLFIDARKLGRMEGRVFRVFDD  420
            E +V+LP QLF++TQIP CLWF++++K +NG ++R  E+LFIDAR +G+M +R ++ F D
Sbjct  351  ECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSD  410

Query  421  EDIARIGDTVHRWRQAFPPLPPATegssrgregrgegLAYADVPGFCRSVPLAEIAEHGY  480
            EDI ++++T H WR +                   ++ +Y D++GFC+   L E+ ++ Y
Sbjct  411  EDIQKVAQTYHAWRGT-------------------NDKPYEDIAGFCKVANLEEVKNNEY  451

Query  481  VLTPGRYVGAEDIEDDDEVFSEKMERLTAQLAEQMAKGVELDALIREKLGALGYGV  536
            +LTPGRYVG  D+E+D+E F +KMER+T++L+EQ AK+ EL+  IR  L +LGYGV
Sbjct  452  ILTPGRYVGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

72) Neut_0541 in NC_008344


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  499 bits (1881),  Expect = 2e-142, Method: Compositional matrix adjust.
 Identities = 302/529 (58%), Positives = 407/529 (77%), Gaps = 29/529 (5%)

Query  13   LGFEAELFKAADKLRGNMEPSDYKHVALGLIFLKYISDAFearhaelaaesaaaaeDKDE  72
            +GFE  L +AADKLRG+M++++YK+VALGLIFLKY+SD+FE +  EL  ++ A  ED+DE
Sbjct  7    IGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDE  66

Query  73   YLADNIFWVPKEGRWSHLKANAKRPEIGTLIDDAMRAIEKDNESLKGVLPKDYARPALNK  132
            YLA+NIFWVPKE+RW  ++ NAK+PEIG +ID AM AIE++NESLKGVLPK+YARPAL+K
Sbjct  67   YLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALDK  126

Query  133  VMLGELIDLISGIAMNEGGDKSKDVLGRVYEYFLSQFAGAEGKRGGEFYTPRSVVQVLVQ  192
              LG++IDL++ + + +   + +DVLGRVYEYF+++FA+AEGK +GEFYTP S+V++LV+
Sbjct  127  EKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVE  185

Query  193  MLEPYAGRVYDPCCGSGGMFVQSEKFVLEHGGRIGDIAIYGQESNYTTWRLAKMNLAVRG  252
            M+EPY GR+YDPCCGSGGMFVQSE+FV  H GR++DIAIYGQESN TTW+LAKMNLA+RG
Sbjct  186  MIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRG  245

Query  253  IDSDIRWNNEGSFHKDELRDLRFDHILANPPFNISDWGGDRLREDPRWQFGVPPVGNANY  312
            ID+D+   N ++FH+D  ++L+ D ILANPPFN SDWG +RL +D RWQFG+PP GNANY
Sbjct  246  IDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANY  305

Query  313  AWLQHIHWHLAPFGTAGVVLANGSMSSNQSGEGEIRKAMVEADAVDCMVTLPGQLFYSTQ  372
            AW++H+   LAP GTAG VLANGSMS++  +E EIRK ++E D V+C+VTLPGQLFYSTQ
Sbjct  306  AWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQ  365

Query  373  IPACLWFLARDKSNGKRGSLSKGGETLRDRRGEVLFIDARNMGTLVDRTRRELTDEDIQK  432
            IP CLWF++ +K++  +          ++R  E+LFIDAR++G +V RT +E++DEDIQK
Sbjct  366  IPVCLWFISNNKGQNGK----------KERENEILFIDAREIGHMVSRTLKEFSDEDIQK  415

Query  433  IADTYHAWRGEKVAGDAQGSASVAGGRMPGATQYADIPGFCKAATLEEIRKHGHVLTPGR  492
            +A+TYHAWRG                       Y DI+GFCK A LEE++++  +LTPGR
Sbjct  416  VAQTYHAWRG------------------TNDKPYEDIAGFCKVANLEEVKNNEYILTPGR  457

Query  493  YVgaeaaeddgeafadKMQRLSaqwreqqqeaarLDVEIEANLRELGYG  541
            YVG    E+D E+F +KM+R++++  EQ   +  L+ +I  +L  LGYG
Sbjct  458  YVGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYG  506

73) STH1910 in NC_006177


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  499 bits (1882),  Expect = 2e-142, Method: Compositional matrix adjust.
 Identities = 286/515 (56%), Positives = 398/515 (78%), Gaps = 20/515 (3%)

Query  24   TLWAAADKLRSSMDAAEYKHIVLGLIFLKYISDSFVAQRERLRKVLADPASDLYLDDPAD  83
             LW AADKLR+SMDAAEYK++ LGLIFLKY+SDSF  + E L++       D Y D+   
Sbjct  12   KLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQ-------DPYADE---  61

Query  84   REAALEEREYYTMDNVFWVPDQARWETIRAHAKQPDIGARIDQALEAIEEENPRLKGLLD  143
                 E+++ Y  +N+FWVP +ARW+ I  +AK+P+IG  ID+A+ AIE+EN  LKG+L 
Sbjct  62   -----EDQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLP  116

Query  144  KRYGRAHLEPGRLGELVDLISTIGFGEEHRARDVLGEVYEYFLGQFASAEGKKGGQFYTP  203
            K Y+R+ L+  +LG+++DL++    + E R +DVLG VYEYF+++FASAEGK++G+FYTP
Sbjct  117  KEYARPALDKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTP  176

Query  204  ASVVKLLVAILAPYKGKVYDPCCGSGGMFVQAERFLESRGGRFGDLSIYGQEANPTTWRL  263
            +S+VKLLV ++ PYKG++YDPCCGSGGMFVQ+ERF+E + GR++D++IYGQE+NPTTW+L
Sbjct  177  SSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKL  236

Query  264  VAMNLTIRGLDFNLGKEPADTFHRNQHPDLRADYILANPPFNMSDWGGERLVDDPRWIYG  323
              MNL+IRG+D +LG   ADTFH + H +L+ADYILANPPFN SDWG ERL+DD RW +G
Sbjct  237  AKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFG  296

Query  324  TPPAGNANFAWLQHILWHLAPAGQAGVVLANGSMSSQQNNEGEIRKNmveadvvevmvaL  383
             PP GNAN+AW++H++  LAP G AG VLANGSMS+  ++E EIRKN++E D+VE +V+L
Sbjct  297  IPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTL  356

Query  384  PPQLFFNTQIPACLWFLCKDKTKNG-RDRRGEVLFIDARKMGRMETRVNRVLDDEEIAKI  442
            P QLF++TQIP CLWF+ ++K +NG ++R  E+LFIDAR +G+M +R  + + DE+I K+
Sbjct  357  PGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKV  416

Query  443  ANTVHLWRQDREAPPGQVYEDVPGFCRAVKLEEIAANGYVLTPGRYVGAEEVEDDDETFA  502
            A+T H WR   + P    YED++GFC+  +LEE+  N Y+LTPGRYVG  +VE+D+E F 
Sbjct  417  AQTYHAWRGTNDKP----YEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFE  472

Query  503  EKMERLTAELAEQMKKGAELDEQIRQILGRLGYDL  537
            +KMER+T+EL+EQ  K+ EL++QIR+ L  LGY++
Sbjct  473  QKMERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

74) BIL_01960 in NC_021008


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  497 bits (1874),  Expect = 5e-142, Method: Compositional matrix adjust.
 Identities = 299/504 (60%), Positives = 398/504 (79%), Gaps = 11/504 (2%)

Query  9    AEIGFEEQIWSAADKLRGNIDASEYKNVVLGLIFLKYISDKFDQKYQelveegegfeedr  68
            A IGFEE++W AADKLRG++DA+EYKNV LGLIFLKY+SD F++KY+EL ++  + EED+
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ  64

Query  69   deYASENIFFVPESARWKTIAAAAHTPEIGKAIDEAMRQIEAENNKLKGILPKNFARQEL  128
            DEY +ENIF VP  ARW+ I   A  PEIG+ ID AM  IE EN+ LKG+LPK++AR  L
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  129  DKRRLGEVVDLFANVKMAEKGDSR-DILGRTYEYCLAKFAEAEGKNAGEFYTPACVVKTL  187
            DK +LG+++DLF+  K+++    + D+LGR YEY +AKFA AEGKNAGEFYTP+ +VK L
Sbjct  125  DKEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL  183

Query  188  VEVIEPYHGRVYDPCCGSGGMFVQSADFVKRHQGNINDISVYGQESNPTTWKMATMNLAI  247
            VE+IEPY GR+YDPCCGSGGMFVQS  FV +HQG ++DI++YGQESNPTTWK+A MNLAI
Sbjct  184  VEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAI  243

Query  248  RGIDADLGDHNADTFFEDLHKTEKFDFILANPPFNLKDWGGKKLENDVRWQYGTPPEGNA  307
            RGID DLG++NADTF +DLHK  K D+ILANPPFN  DWG  +L +D RWQ+G PP GNA
Sbjct  244  RGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNA  303

Query  308  NFAWVQHMIHHLNRSGRMGMVLANGALSSQTNNEGEIRAKIVDADLVEGIIAMPDKLFYS  367
            N+AW++HMI  L  +G  G VLANG++S+  ++E EIR ++++ DLVE I+++P++LFYS
Sbjct  304  NYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYS  363

Query  368  TGIPVSLWIITKNKKQSGK------TLFIDARDMGTMVSRRLREFTDEDIAKVSTAFDAF  421
            T IPV LW+I++NK Q+GK       LFIDAR++G MVSR L+EF+DEDI KV+ +++A 
Sbjct  364  TQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAW  423

Query  422  R---DGTLETEKGFSAIATTEDIKAQDYILTPGRYVGVAeveeddepfeeKMTRLTGEIA  478
            R   D   E   GF  +A  E++K ++YILTPGRYVG+A+VEED+EPFE+KM R+T+E++
Sbjct  424  RGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELS  483

Query  479  KCFEESNRLQEQIKKNLEAIGYGM  502
              F  S+ L++QI+K+LE++GYG+
Sbjct  484  EQFAKSKELEDQIRKSLEGLGYGV  507

75) BLLJ_1481 in NC_015067


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  497 bits (1874),  Expect = 5e-142, Method: Compositional matrix adjust.
 Identities = 299/504 (60%), Positives = 398/504 (79%), Gaps = 11/504 (2%)

Query  9    AEIGFEEQIWSAADKLRGNIDASEYKNVVLGLIFLKYISDKFDQKYQelveegegfeedr  68
            A IGFEE++W AADKLRG++DA+EYKNV LGLIFLKY+SD F++KY+EL ++  + EED+
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ  64

Query  69   deYASENIFFVPESARWKTIAAAAHTPEIGKAIDEAMRQIEAENNKLKGILPKNFARQEL  128
            DEY +ENIF VP  ARW+ I   A  PEIG+ ID AM  IE EN+ LKG+LPK++AR  L
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  129  DKRRLGEVVDLFANVKMAEKGDSR-DILGRTYEYCLAKFAEAEGKNAGEFYTPACVVKTL  187
            DK +LG+++DLF+  K+++    + D+LGR YEY +AKFA AEGKNAGEFYTP+ +VK L
Sbjct  125  DKEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL  183

Query  188  VEVIEPYHGRVYDPCCGSGGMFVQSADFVKRHQGNINDISVYGQESNPTTWKMATMNLAI  247
            VE+IEPY GR+YDPCCGSGGMFVQS  FV +HQG ++DI++YGQESNPTTWK+A MNLAI
Sbjct  184  VEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAI  243

Query  248  RGIDADLGDHNADTFFEDLHKTEKFDFILANPPFNLKDWGGKKLENDVRWQYGTPPEGNA  307
            RGID DLG++NADTF +DLHK  K D+ILANPPFN  DWG  +L +D RWQ+G PP GNA
Sbjct  244  RGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNA  303

Query  308  NFAWVQHMIHHLNRSGRMGMVLANGALSSQTNNEGEIRAKIVDADLVEGIIAMPDKLFYS  367
            N+AW++HMI  L  +G  G VLANG++S+  ++E EIR ++++ DLVE I+++P++LFYS
Sbjct  304  NYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYS  363

Query  368  TGIPVSLWIITKNKKQSGK------TLFIDARDMGTMVSRRLREFTDEDIAKVSTAFDAF  421
            T IPV LW+I++NK Q+GK       LFIDAR++G MVSR L+EF+DEDI KV+ +++A 
Sbjct  364  TQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAW  423

Query  422  R---DGTLETEKGFSAIATTEDIKAQDYILTPGRYVGVAeveeddepfeeKMTRLTGEIA  478
            R   D   E   GF  +A  E++K ++YILTPGRYVG+A+VEED+EPFE+KM R+T+E++
Sbjct  424  RGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELS  483

Query  479  KCFEESNRLQEQIKKNLEAIGYGM  502
              F  S+ L++QI+K+LE++GYG+
Sbjct  484  EQFAKSKELEDQIRKSLEGLGYGV  507

76) hsdM-1 in NC_007204


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  497 bits (1874),  Expect = 6e-142, Method: Compositional matrix adjust.
 Identities = 275/513 (54%), Positives = 388/513 (76%), Gaps = 16/513 (3%)

Query  17   FEEALWDAANKLRGSVESSEYKHIVLSLIFLKFISDTFEQQRQKLIDTGYEKHIDMVQAY  76
            FEE LW+AA+KLRGS++++EYK++ L+LIFLK++SD+FE++ + L +  Y  + D  + Y
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ-DEY  67

Query  77   TKDNVFYLPAESRWSFIQQNAKQEDIALKIDTALSTIEKTNQSLKGALPDNYFSRLGLTA  136
              +N+F +P E+RW +I++NAK+ +I+  ID A+ +IE+ N+SLKG LP +Y +R +L  
Sbjct  68   LAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEY-ARPALDK  126

Query  137  SKLAALIDVVN-NIDTIGNPEEDTVGRVYEYFLGKFAATEGKGGGEFYTPKSVVNLIAEM  195
             KL+ +ID+   +++   +  +D +GRVYEYF++KFA++EGK +GEFYTP S+V+L+ EM
Sbjct  127  EKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEM  186

Query  196  VEPYQGKIYDPCCGSGGMFVQSIKFIESHHGNTKDVSIYGQEYTSTTYKLAKMNLAIRGI  255
            +EPY+G+IYDPCCGSGGMFVQS +F+E H+G   D++IYGQE  +TT KLAKMNLAIRGI
Sbjct  187  IEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRGI  246

Query  256  SSNLGDVAADTFFKDQHEDLKADFIMANPPFNQKDWRASDELVDDPRWAGYPTPPTGNAN  315
             ++LG+  ADTF +D H +LKAD+I+ANPPFN  DW + + L+DD RW  +  PP GNAN
Sbjct  247  DNDLGERNADTFHNDLHKGLKADYILANPPFNASDW-GQERLLDDYRWQ-FGIPPKGNAN  304

Query  316  YAWILHMISKLSEHGTAGFVLANGSMSTTTSGEGEIRQQIIENDLVDCMIALPGQLFYTT  375
            YAWI HMISKL+ +GTAGFVLANGSMST+  +E EIR+++IE+DLV+C+++LPGQLFY+T
Sbjct  305  YAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYST  364

Query  376  QIPVCLWFINkdkqaksadskaRGLRNRSGETLFIDARAIGSMISRTNKELTKDDIEAIA  435
            QIPVCLWFI+        +    G ++R  E LFIDAR IG M+SRT KE++ +DI+ +A
Sbjct  365  QIPVCLWFIS-------NNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVA  417

Query  436  KTYHAWRGEKEAGGYEAYTDEAGYCKSATLDDMKANDYVLTPGRYVGAAAIEDDGISFET  495
            +TYHAWRG ++     +Y D AG+CK A L+++K N+Y+LTPGRYVG A +E+D  +FE 
Sbjct  418  QTYHAWRGTND----KPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQ  473

Query  496  KMLELSQTLYAQMQASEKLDATIRQNLEVLGYG  528
            KM  ++  L  Q   S  L+  IR++LE LGYG
Sbjct  474  KMERITSELSEQFAKSKELEDQIRKSLEGLGYG  506

77) hsdM in NC_010617


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  496 bits (1870),  Expect = 1e-141, Method: Compositional matrix adjust.
 Identities = 277/508 (55%), Positives = 402/508 (80%), Gaps = 14/508 (2%)

Query  14   LEQTLWDAADKLRGNQEPSEYKHVVLGLVFLKYVSDRFEERREQLKGELAAEGIKPERIE  73
            +E+ LW+AADKLRG+ +++EYK+V LGL+FLKYVSD FEE+ E+LK +  A+        
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADE-------  61

Query  74   SFLEDRDEYASQNVFWVPSLARWGYVQSVAKQPEIGQQIDQAMDLIEKENPSLRGVLPRN  133
               ED+DEY ++N+FWVP  ARW Y++  AK+PEIGQ ID+AM  IE+EN SL+GVLP++
Sbjct  62   ---EDQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKE  118

Query  134  YGRDGLDKRRLGELVDLIGSIGFTETDDHGADDVLGRVYEYFLGQFAGKETGKDAGAFYT  193
            Y+R +LDK +LG+++DL+ ++   +T+ +  +DVLGRVYEYF+++FA+ E GK+AG FYT
Sbjct  119  YARPALDKEKLGDIIDLF-TFKVGDTESR-KQDVLGRVYEYFIAKFASAE-GKNAGEFYT  175

Query  194  PRSVVRTLVEMLEPYKGRVYDPAAGSGGMFVQSAEFVKAHGGKRTDISVYGQEFTDTTWK  253
            P S+V+ LVEM+EPYKGR+YDP  GSGGMFVQS  FV  H G+  DI++YGQE   TTWK
Sbjct  176  PSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWK  235

Query  254  LAKMNLALRGIEADMGTHSADSFTEDLHPDLRADFVIANPPFNVSDWWDAKLADDPRWKY  313
            LAKMNLA+RGI+ D+G ++AD+F +DLH +L+AD+++ANPPFN SDW + +L DD RW++
Sbjct  236  LAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQF  295

Query  314  GTPPKGNANFAWVQHFLHHLAPYGTAGFVLANgslsskssgegeTRQRLVEAGLVDCIVA  373
            G PPKGNAN+AW++H +  LAP GTAGFVLANGS+S+ + +E E R+ L+E +LV+CIV+
Sbjct  296  GIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVT  355

Query  374  MPDKLFFNTGIPVSLWFVSKGRDGNGHRARKGEVLFIDARKLGRMESRKLRVLDNDDIGK  433
            +P++LF++T IPV LWF+S+ ++ NG + R  E+LFIDAR +G+M SR L+ + ++DI K
Sbjct  356  LPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQK  415

Query  434  IAGTYHAWRD-HDGGYQNETGFAKAAKIEEIEKHDFVLTPGRYVGAAEAEVDDEPIDEKI  492
            +A TYHAWR+ +D  Y++ +GF K A++EE+ +++++LTPGRYVG A+ E D+EP+++K+
Sbjct  416  VAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKM  475

Query  493  ERLTTELFAEFERGRELEDEVRARLRGV  520
            ER+T+EL  +F +++ELED++R  L G+
Sbjct  476  ERITSELSEQFAKSKELEDQIRKSLEGL  503

78) hsdM in NC_008384


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  495 bits (1868),  Expect = 2e-141, Method: Compositional matrix adjust.
 Identities = 293/508 (58%), Positives = 390/508 (77%), Gaps = 10/508 (1%)

Query  7    GDLGFTAELFKAADKLRGNLEPSEYKHVALGLIFLKYISDAFEGLHARLTadeyadaedp  66
            + +GF   L +AADKLRG+++++EYK+VALGLIFLKY+SD+FE     L  D YAD ED 
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ  64

Query  67   eeylaeNVFWVPTEARWPFLQANAKRPEIGKLIDEAMEAIERFPSNEGLKGVLPKNYARP  126
            +EYLAEN+FWVP EARW +++ NAK+PEIG++ID AM AIE    NE+LKGVLPK+YARP
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIEN--ENESLKGVLPKEYARP  122

Query  127  TLNKTMLGELIDLFSNIGLHDSKDTAKDLLGRVYEYFLSGFAGSEGKRGGEFFTPRSVVR  186
            +L+K  LG++IDLF+ + + D+    +D+LGRVYEYF++ FA++EGK +GEF+TP S+V+
Sbjct  123  ALDKEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVK  181

Query  187  TLVEMLEPYKGRVYDPCCGSGGMFVQSENFIEEHGGRRNDIAVYGQEINHTTWRLAKMNL  246
             LVEM+EPYKGR+YDPCCGSGGMFVQSE F+E H GR +DIA+YGQE N TTW+LAKMNL
Sbjct  182  LLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNL  241

Query  247  AVQGIDADIRWNNEGSFHRDELPDLKADFILANPPFNISDWGGERLAEDTRWKFGKPPNG  306
            A++GID D+   N ++FH D   +LKAD+ILANPPFN SDWG ERL +D RW+FG PP+G
Sbjct  242  AIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKG  301

Query  307  NANFGWLQHIIHHLAPRGTAGVVLANgsmssqqsgegeIRKAMIERDQVDCMVALPGQLF  366
            NAN++W++H+I  LAP GTAG VLANGSMS+   +E EIRK +IE+D V+C+V+LPGQLF
Sbjct  302  NANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLF  361

Query  367  YSTQIPACLWILARDKSANGHRDRRGEILFIDARKLGFMVDRVRREFTADDIEKITGAYH  426
            YSTQIP CLW+++ +K+ NG ++R  EILFIDAR +G MV R  +EF+ +DI+K++ +YH
Sbjct  362  YSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYH  421

Query  427  RWRSKPETRVNNGWADYADEPGFCKSASLEEVRGHGHVLTPGRYVGAADAEDDGVSFAEK  486
             WR+  +         Y D +GFCK A+LEEV+ +  +LTPGRYVG AD E+D  +F +K
Sbjct  422  AWRGTNDKP-------YEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQK  474

Query  487  FEGLRETLMAQFEEGRRLEKAIEAALAA  514
             E +   L  QF  ++ LE  I  +L +
Sbjct  475  MERITSELSEQFAKSKELEDQIRKSLEG  502

79) hsdM in NC_018645


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  495 bits (1867),  Expect = 2e-141, Method: Compositional matrix adjust.
 Identities = 280/513 (55%), Positives = 388/513 (76%), Gaps = 15/513 (2%)

Query  13   GFEESLWDSANRLRGSVESSEYKHVVLSLIFLKFVSDKFEERRAQLIAEGKEQYADMVEF  72
            GFEE LW++A++LRGS++++EYK+V L+LIFLK+VSD FEE+  +L  +   +  D  E 
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDE-  66

Query  73   YTMKNIFYLPETSRWSHIQQHAKQGDIAVRIDSALTAVEKSNASLKGALPDNYFSRLGLD  132
            Y   NIF +P  +RW  I+++AK+ +I+  ID A+ A+E+ N SLKG LP +Y +R +LD
Sbjct  67   YLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEY-ARPALD  125

Query  133  GSKLAALIDAIN-NIDTVADKEEDVVGRVYEYFLGKFAASEGKLGGEFYTPKCVVNLIAE  191
              KL+ +ID +  +++    + +DV+GRVYEYF++KFA++EGK +GEFYTP  +V+L+ E
Sbjct  126  KEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVE  185

Query  192  MIEPYKGKIYDPCCGSGGMFVQSLKFVQSHHGNTRDISVYGQEFTATTYKLAKMNLAVRG  251
            MIEPYKG+IYDPCCGSGGMFVQS +FV+ H+G   DI++YGQE  +TT KLAKMNLA+RG
Sbjct  186  MIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRG  245

Query  252  LSANLGEVPADTFFKDQHPDLKADYIMANPPFNMKAWRAADELVNDSRWDGFETPPTGNA  311
            +  +LGE  ADTF +D H +LKADYI+ANPPFN   W + + L++D RW+ F  PP GNA
Sbjct  246  IDNDLGERNADTFHNDLHKGLKADYILANPPFNASDW-GQERLLDDYRWQ-FGIPPKGNA  303

Query  312  NYAWILHMVSKLSEHGVAGFVLANGSMSTNTKGEGAIRQKLVENDLVDCMIALPGQLFFT  371
            NYAWI HM+SKL+ +G AGFVLANGSMST+ K+E  IR++L+E+DLV+C+++LPGQLF++
Sbjct  304  NYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYS  363

Query  372  TQIPVCLWFLTKNKKGESERGYRNREGETLFIDARKIGSMINRTQKELLPDDIAAIAKTY  431
            TQIPVCLWF+++NK   ++ G ++RE E LFIDAR IG M++RT KE+  +DI  +A+TY
Sbjct  364  TQIPVCLWFISNNK---GQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTY  420

Query  432  HAWRGEPDGQNKAKDGVYEDQAGYCKSATLEEMRKHDYVLTPGRYVGAAPLEDDGIPFET  491
            HAWRG       ++D  YED AG+CK A LEE+++++Y+LTPGRYVG A +E+D  PFE 
Sbjct  421  HAWRG-------TNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQ  473

Query  492  KMTEMSQALYAQMKESAKLDEVIRKNLEVLGYG  524
            KM  ++  L  Q   S  L++ IRK+LE LGYG
Sbjct  474  KMERITSELSEQFAKSKELEDQIRKSLEGLGYG  506

80) Mmol_0229 in NC_012968


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  495 bits (1866),  Expect = 3e-141, Method: Compositional matrix adjust.
 Identities = 278/500 (56%), Positives = 391/500 (79%), Gaps = 9/500 (1%)

Query  12   LEKQLWKAADKLRKNIDAAEYKHIVLGLIFLKYISDTFEQQFAKLAAGVGEYAGSDPEDK  71
            +E +LW+AADKLR ++DAAEYK++ LGLIFLKY+SD+FE+++  L  +   YA  D ED+
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQD--PYA--DEEDQ  64

Query  72   DEYLAENVFFVPQEARWSYLQSQAKQPDIGKMVDNAMDAIEAENASLKGVLPKVFARDNL  131
            DEYLAEN+F VP+EARW Y++ +AK+P+IG+++D+AM AIE EN SLKGVLPK +AR  L
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  132  DPASLGQLIDLVGNIALGDAKSRSADVLGHVFEYFLGEFALAEGKQGGQFYTPRSVVELL  191
            D   LG++IDL   + +GD+ SR  DVLG+V+EYF++ FA AEGK++G+FYTP S+V LL
Sbjct  125  DKEKLGDIIDLF-TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL  183

Query  192  VEMLEPYNGRVFDPCCGSGGMFVQSEKFIADHQGKVNDISIYGQESNQTTWRLAKMNLAI  251
            VEM+EPY+GR++DPCCGSGGMFVQSE+F+  HQG+++DI+IYGQESN TTW+LAKMNLAI
Sbjct  184  VEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAI  243

Query  252  RGIEASQVKWNNEGSFLNDSHKDLKADYIIANPPFNVSDWSGELLRNDGRWQFGVPPAGN  311
            RGI+     +N + +F ND HK+LKADYI+ANPPFN SDW+ E L +D RWQFG+PP GN
Sbjct  244  RGIDNDLGERNAD-TFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGN  302

Query  312  ANFAWLQHFIYHLNPTGQAGIVLAKGALTSKTSGEGDIRKALIEQGNVIDCIVNLPAKLF  371
            AN+AW++H I  L P G AG+VLA+G++++   +E +IRK LIEQ ++++CIV LP++LF
Sbjct  303  ANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQ-DLVECIVTLPGQLF  361

Query  372  LNTQIPAALWFMSRNRTNGKFRNRSNEILFIDARNLGHLINRRTKELSHTDIKQITDTYH  431
             +TQIP  LWF+S N+ +   ++R NEILFIDAR++GH+++R  KE+S+ DI+++++TYH
Sbjct  362  YSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYH  421

Query  432  NWRNPNG-SYADVSGFCASVSLERVKELDYVLTPGRYVGLPD-DEDDFNFAERFNALKAE  489
             WR  N+ +Y D++GFC   +LE VK+ +Y+LTPGRYVGL+D +ED+  F ++ + + +E
Sbjct  422  AWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSE  481

Query  490  YEAQLLEEEKLNKAIAENLA  509
               Q+     L+  I  +L 
Sbjct  482  LSEQFAKSKELEDQIRKSLE  501

81) Tmath_1864 in NC_014209


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  495 bits (1865),  Expect = 3e-141, Method: Compositional matrix adjust.
 Identities = 287/519 (56%), Positives = 386/519 (75%), Gaps = 29/519 (5%)

Query  7    GVLNFASTLWAAADRLRNNMEPSEYKHIVLGLIFLKYISDAFKFRKEELEYLIKDPKSEE  66
            + + F   LW AAD+LR +M+++EYK++ LGLIFLKY+SD+F  + EEL       K + 
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL-------KQDP  57

Query  67   YYCETNEEAQLILEDKDEYMAANVFYVPPEARYEYIMANARRSDIGKLIDNAMDLIEKEN  126
            Y   ++EE Q      DEY+A N+F VP EAR +YI  NA++++IG++ID+AM  IE+EN
Sbjct  58   Y---ADEEDQ------DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENEN  108

Query  127  PKQLRGVLPKVYTRAPLDPHTLGEIVTLIG-SINFGKNEELDVLGRVYEYFLSEFARKEG  185
               L+GVLPK Y+R++LD + LG+I+ L+   +    +   DVLGRVYEYF++ FA  EG
Sbjct  109  ES-LKGVLPKEYARPALDKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEG  167

Query  186  KRGGEFFTPSTVVKLLVEMIQPLHGRVFDPCCGSGGMFVQSIRFVEAHAGKKGDISIYGQ  245
            K +GEF+TPS++VKLLVEMI+P  GR++DPCCGSGGMFVQS RFVE H G+ +DI+IYGQ
Sbjct  168  KNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQ  227

Query  246  ESNPTTYRLCKMNLAIRGIEADI--RLGNSFTDDQFKDLRADYILANPPFNDSAWGADRL  303
            ESNPTT +L KMNLAIRGI+ D+  R +++F +D  K+L+ADYILANPPFN S WG +RL
Sbjct  228  ESNPTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERL  287

Query  304  ANDVRWKYGLPPDSNANYAWIQHFIYHLAPKGVAGFVLANGSMTTSNNAEYEIRKRIIED  363
             +D RW++G+PP +NANYAWI+H I  LAP+G AGFVLANGSM+TS + E EIRK +IE+
Sbjct  288  LDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQ  347

Query  364  NLVDCMVALPPQLFYTTGIPACLWFI--RKGRETK-----ETLFIDARKIGVMVDRTHRE  416
            +LV+C+V+LP QLFY+T IP CLWFI   KG++ K     E LFIDAR IG MV RT +E
Sbjct  348  DLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKE  407

Query  417  LTDEEIQKIAQTYHNWRNKNG--YEDVKGFCASVPMEVIAQNDYVLAPGRYVGVEDTRED  474
            ++DE+IQK+AQTYH WR  N+  YED+ GFC    +E + +N+Y+L+PGRYVG+ D  ED
Sbjct  408  FSDEDIQKVAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEED  467

Query  475  DIPFEEKMAELTEKLYQQMKEAKRLDEVIKANLEELGYG  513
            + PFE+KM  +T  L +Q   +K L++ I+ +LE LGYG
Sbjct  468  EEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYG  506

82) Jden_2248 in NC_013174


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  495 bits (1865),  Expect = 3e-141, Method: Compositional matrix adjust.
 Identities = 281/513 (55%), Positives = 407/513 (80%), Gaps = 14/513 (2%)

Query  8    KPTKTLEQTLWEAADKLRGNQEPSEYKHVVLGLVFLKYISDRFeerratleaelaaeGIK  67
             +T  +E+ LW+AADKLRG+ +++EYK+V LGL+FLKY+SD FEE+            +K
Sbjct  4    MATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYE---------ELK  54

Query  68   PERLPDFLEDRDEYTSHNVFWVPELARWGYIQSVAKQPEIGQQIDQAMDLIEKENPTLRG  127
             +  +D  ED+DEY ++N+FWVP  ARW YI+  AK+PEIGQ ID+AM  IE+EN +L+G
Sbjct  55   QDPYAD-EEDQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKG  113

Query  128  VLPRNYGRDGLDKRRLGELVDLIGSIGFTETDDHGADDVLGRVYEYFLGQFAGKETGKDA  187
            VLP++Y+R +LDK +LG+++DL+ ++   +T+ +  +DVLGRVYEYF+++FA+ E GK+A
Sbjct  114  VLPKEYARPALDKEKLGDIIDLF-TFKVGDTESR-KQDVLGRVYEYFIAKFASAE-GKNA  170

Query  188  GAFYTPRSVVKTLVEMLEPYQGRVYDPAAGSGGMFVQSAEFVKAHGGKRTDISVYGQEFT  247
            G FYTP S+VK LVEM+EPY+GR+YDP  GSGGMFVQS  FV  H G+  DI++YGQE  
Sbjct  171  GEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESN  230

Query  248  DTTWKLSKMNLALRGIEADMGPRSADSFTDDLHPDLRADFVIANPPFNVSDWWDAKLEGD  307
             TTWKL+KMNLA+RGI+ D+G R+AD+F +DLH +L+AD+++ANPPFN SDW + +L +D
Sbjct  231  PTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDD  290

Query  308  PRWQYGTPPQGNANFAWVQHFIYHLSPKGTAGFVLANgslssksggegeMRRKLVEADLV  367
             RWQ+G PP+GNAN+AW++H I  L+P+GTAGFVLANGS+S+ + +E E+R++L+E DLV
Sbjct  291  YRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLV  350

Query  368  DCIVAMPDKLFFNTGIPVALWFVSKARHGNGHRERRSEVLFIDARKLGTMESRRLRVLTD  427
            +CIV++P++LF++T IPV LWF+S+ +  NG +ER +E+LFIDAR +G M SR L+ ++D
Sbjct  351  ECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSD  410

Query  428  DDIAKIADTYHAWR-NHDGGYEDVPGFAKAASLEEIAKHDYVLTPGRYVGAAEAEVDDEP  486
            +DI K+A+TYHAWR  +D  YED++GF K A+LEE+ +++Y+LTPGRYVG A+ E D+EP
Sbjct  411  EDIQKVAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEP  470

Query  487  IDEKIERLTKELFAEFERGRELEDEVRQRLSGV  519
            +++K+ER+T EL  +F +++ELED++R+ L G+
Sbjct  471  FEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

83) DaAHT2_1004 in NC_014216


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  495 bits (1865),  Expect = 3e-141, Method: Compositional matrix adjust.
 Identities = 278/517 (54%), Positives = 391/517 (76%), Gaps = 14/517 (2%)

Query  21   LKKPTKSFEQTLWETADRLRGTVESSEYKHVVLSLIFLKFVSDKFEQRKRELIAEGQGDY  80
            L  +T +FE+ LW++AD+LRG+++++EYK+V L+LIFLK+VSD FE++  EL  +  +D 
Sbjct  2    LLMATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADE  61

Query  81   VDMVEFYTMKNVFYLPEEARWSTIRKAAKQDDIAVRIDTALHTVEKNNPALRGALPDNYF  140
             D  E Y   N+F +P EARW  I   AK+ +I+  ID A+ ++E++N +L+G LP +Y 
Sbjct  62   EDQDE-YLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEY-  119

Query  141  SRLGLDVSKLAALIDSIN-NIDTVADHEQDVVGRVYEYFLGKFAATEGKGGGEFYTPKCV  199
            +R +LD  KL+ +ID +  +++    + QDV+GRVYEYF++KFA++EGK +GEFYTP  +
Sbjct  120  ARPALDKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSI  179

Query  200  VKLIAEMIEPFRGKIYDPCCGSGGMFVQSVKFVESHRGSKKDISIYGQEYTSTTYKLSKM  259
            VKL+ EMIEP++G+IYDPCCGSGGMFVQS +FVE H+G   DI+IYGQE  +TT KL+KM
Sbjct  180  VKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKM  239

Query  260  NLAIRGIAANLGEAPADTFFKDQHPDLKADFIMANPPFNLKEWRAANELTDDPRWAGYEV  319
            NLAIRGI  +LGE  ADTF +D H +LKAD+I+ANPPFN  +W + + L DD RW  + +
Sbjct  240  NLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDW-GQERLLDDYRWQ-FGI  297

Query  320  PPTGNANYAWILHMVSKLSENGVAGFVLANGSMSTNTSGEGLIRRKLIENDLIDCMIAMP  379
            PP GNANYAWI HM+SKL+ NG AGFVLANGSMST+  +E  IR++LIE+DL++C++++P
Sbjct  298  PPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLP  357

Query  380  GQLFYTTQIPVCLWFITRNKKAQRIEGHSDSSHRDRRGETLFIDARNMGTMIDRTHKELT  439
            GQLFY+TQIPVCLWFI+ NK        ++++ ++R  E LFIDAR++G M+ RT KE++
Sbjct  358  GQLFYSTQIPVCLWFISNNK--------GQNGKKERENEILFIDAREIGHMVSRTLKEFS  409

Query  440  CDDIAEIARTYHAWRGEAKDGAYQDQPGFCKAATLAEIKANDYVLTPGRYVGAAEIEDDG  499
             +DI  +A+TYHAWRG ++D +Y+D +GFCK A L E+K N+Y+LTPGRYVG A++E+D 
Sbjct  410  DEDIQKVAQTYHAWRG-TNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDE  468

Query  500  IPFEQKMTELSQTLYRQMAEAEKLDAVIRRNLEALGY  536
             PFEQKM  ++  L  Q A +  L+  IR++LE+LGY
Sbjct  469  EPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGY  505

84) Bcep1808_0009 in NC_009256


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  495 bits (1865),  Expect = 3e-141, Method: Compositional matrix adjust.
 Identities = 272/526 (52%), Positives = 386/526 (74%), Gaps = 29/526 (5%)

Query  5    LKKTLWAAADKLRASMDAAEYKHIVLGLIFLKYISDAFCERRAQLS-AAFADESDDLFLP  63
            +   LW AADKLR+SMDAAEYK++ LGLIFLKY+SD+F E+  +L   ++ADE       
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADE-------  61

Query  64   DATDHVVALEERDYYTMANVFWVPAVARWETLRAQAKQADIGVRIDAALEAIEADNARLK  123
                     E++D Y   N+FWVP  ARW+ +  +AK+++IG  ID A+ AIE +N  LK
Sbjct  62   ---------EDQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLK  112

Query  124  GILDKRFGRTQLEPGKLGELVDLIS-KIGFGEGHHAKDLLGEVYEYFLGQFATAEGKKGG  182
            G+L K ++R  L+  KLG+++DL++ K+G +   + +D+LG VYEYF+++FA+AEGK++G
Sbjct  113  GVLPKEYARPALDKEKLGDIIDLFTFKVG-DTESRKQDVLGRVYEYFIAKFASAEGKNAG  171

Query  183  QFYTPASVVRVLVEVLAPHQGRVYDPCCGSGGMFVQSEKFIESHGGRADDISIYGQEANP  242
            +FYTP+S+V++LVE++ P +GR+YDPCCGSGGMFVQSE+F+E H GR DDI+IYGQE+NP
Sbjct  172  EFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNP  231

Query  243  TTWRLVAMNLAIRGFAADLGKEPADTFHRDQHPDLRADYVLANPPFNISDWGGERLADDR  302
            TTW+L  MNLAIRG+  DLG   ADTFH D H +L+ADY+LANPPFN SDWG ERL DD 
Sbjct  232  TTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDY  291

Query  303  RWAHGTPPAGNANYAWLQHILHHLSPHGQAGVVLANGSMTSNQNSEGDIRRAMVEADVID  362
            RW  G PP GNANYAW++H++  L+P+G AG VLANGSM+++ + E +IR+ ++E D+++
Sbjct  292  RWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVE  351

Query  363  VMVALPPQLFLNTQIPACLWFLTKDKSGAPIAGAKPGRDRRGEVLFIDARKLGRMESRVV  422
             +V+LP QLF +TQIP CLWF++++K      G +  ++R  E+LFIDAR +G+M SR +
Sbjct  352  CIVTLPGQLFYSTQIPVCLWFISNNK------GQNGKKERENEILFIDAREIGHMVSRTL  405

Query  423  RVFDEEHISKIAGTVHRWRADGEDGTDEPYADVPGFCRSVKLAEIAEHGHLLTPGRYVGA  482
            + F +E+I K+A T H WR+      D PY D++GFC+  +L E+ ++  +LTPGRYVG 
Sbjct  406  KEFSDEDIQKVAQTYHAWRG----TNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGL  461

Query  483  EATEDDDEVFDEKMERLTSQLFEQMAKGAELDAVIREKLGRLSYAI  528
               E+D+E F++KMER+TS+L EQ AK+ EL+  IR  L  L+Y++
Sbjct  462  ADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

85) Mpet_1674 in NC_014507


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  494 bits (1862),  Expect = 4e-141, Method: Compositional matrix adjust.
 Identities = 291/503 (58%), Positives = 393/503 (79%), Gaps = 9/503 (1%)

Query  7    ANIGFEQEIWSAACVLRGNMDASEYKHVVLGLIFLKYISDKFEQKYNALKeegdgfeede  66
            A IGFE+ +W AA  LRG+MDA+EYK+V LGLIFLKY+SD FE+KY+ LK++  + EED+
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ  64

Query  67   deYLAEGIFYVPPEARWDAIAKKAHTPEIGTTIDDAMRAIEKKNKRLKDILPKTFARPEL  126
            DEYLAE IF VP EARW+ I  +A  PEIG  ID AM AIE+ N  LK++LPK +ARP L
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  127  DKRRLGEVVDLFTNIQMADHGDSKDILGRAYEYCLAKFAEQEGKLAGEFYTPACVVKTIV  186
            DK +LG+++DLFT      ++  +D+LGR YEY +AKFA  EGK AGEFYTP+ +VK +V
Sbjct  125  DKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLV  184

Query  187  EVLQPCQGRVYDPCCGSGGMFVQSAIFIENHRGNINNISVYGQDSNPTTWKMAQMNLAIR  246
            E+++P +GR+YDPCCGSGGMFVQS  F+E+H+G +++I++YGQ+SNPTTWK+A+MNLAIR
Sbjct  185  EMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIR  244

Query  247  GIEADLGKFSADTFYNDLHPTLKADFIMANPPFNLSNWGADKLADDPRWKYGIPPSGNAN  306
            GI+ DLG  +ADTF NDLH  LKAD+I+ANPPFN S+WG ++L DD RW++GIPP GNAN
Sbjct  245  GIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNAN  304

Query  307  FAWMQHMIYHLAPKGRLGLVLANgslssqsggegeIRKNIVEADLVECIVAMPPQLFYTT  366
            +AW++HMI  LAP+G  G+VLANGS+S+ + +E EIRKN++E DLVECIV++P QLFY+T
Sbjct  305  YAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYST  364

Query  367  QIPVSLWFINRDKKQKRKT------LFIDARNKGEMRTRKLRELTQEEIELIGKTVSQFE  420
            QIPV LWFI+ +K Q+ K       LFIDAR+ G+M +R L+E+++E+I+ +++T     
Sbjct  365  QIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWR  424

Query  421  AGT---LEEKKGFSAVVSTEDIAKQDYILTPGRYVGIADVEDDGEPFEQKMERLTGELSE  477
            +      E+  GF  V + E++ +++YILTPGRYVG+ADVE+D EPFEQKMER+T+ELSE
Sbjct  425  GTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSE  484

Query  478  LFVESKKAEEEIRRQLKSVGFEV  500
             F  SK  E++IR+ L ++G+ V
Sbjct  485  QFAKSKELEDQIRKSLEGLGYGV  507

86) Mbur_1222 in NC_007955


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  494 bits (1864),  Expect = 4e-141, Method: Compositional matrix adjust.
 Identities = 281/499 (57%), Positives = 394/499 (79%), Gaps = 8/499 (1%)

Query  12   TIEKQLWKAADKLRKNIDAAEYKHIVLGLIFLKYISDSFEELYQKLQKGDGDYTGADPED  71
             +E +LW+AADKLR ++DAAEYK++ LGLIFLKY+SDSFEE Y+ L+  ++ Y  AD ED
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELK--QDPY--ADEED  63

Query  72   RDEYKAENVFFVPAIARWSYLQSKAKQPEIGKDVDRAMDAIERENPLLKGVLPKVFARGN  131
            +DEY AEN+F VP  ARW Y++ +AK+PEIG+ +D+AM AIE EN  LKGVLPK +AR  
Sbjct  64   QDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPA  123

Query  132  LDPTSLGGLIDLVSNIALGDAKARSADILGHVFEYFLGEFALAEGKRGGQFYTPRSVVEL  191
            LD   LG++IDL + + +GD+ +R  D+LG+V+EYF++ FA AEGK +G+FYTP S+V L
Sbjct  124  LDKEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKL  182

Query  192  LVEMLEPYNGRVFDPCCGSGGMFVQSEKFVADHRGKVNDISIYGQESNQTTWRLAKMNLA  251
            LVEM+EPY+GR++DPCCGSGGMFVQSE+FV  H+G+++DI+IYGQESN TTW+LAKMNLA
Sbjct  183  LVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLA  242

Query  252  IRGIDSSQVKWNNEGSFLNDSHKDLKADYVIANPPFNDSDWSGDLLRKDGRWKYGVPPAG  311
            IRGID+    +N + +F ND HK+LKADY++ANPPFN SDW+ + L  D RW++G+PP G
Sbjct  243  IRGIDNDLGERNAD-TFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKG  301

Query  312  NANYAWIQHFLYHLSPNGQAGFVLAKGSLTSKSSGEGDIRKELVESRMVDCIVNLPPKLF  371
            NANYAWI+H +  L+PNG AGFVLA+GS+++ + +E +IRK+L+E  +V+CIV LP +LF
Sbjct  302  NANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLF  361

Query  372  LNTQIPASLWFLSRNKANGKYRNRTDEILFIDARNMGHLINRRTREFSPEDIQKVADTYH  431
             +TQIP  LWF+S NK++   ++R +EILFIDAR++GH+++R  +EFS EDIQKVA+TYH
Sbjct  362  YSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYH  421

Query  432  NWRNPDGN-YEDVKGFCNSTSIERVHELDYVVTPGRYVGLP-VEEDDFDFNERFTGLKAE  489
             WR  +++ YED+ GFC+ +++E V + +Y++TPGRYVGL+ VEED+  F+++   + +E
Sbjct  422  AWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSE  481

Query  490  FEGQLKEEEQLNSQILENL  508
            +  Q+    +L+ QI  +L
Sbjct  482  LSEQFAKSKELEDQIRKSL  500

87) Desru_3582 in NC_015589


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  493 bits (1859),  Expect = 8e-141, Method: Compositional matrix adjust.
 Identities = 292/516 (57%), Positives = 387/516 (75%), Gaps = 23/516 (4%)

Query  8    ADIGFEQQIWAAADILRGNMDAAEYKHVVLGLIFLKYISDKFEERYQELLAdd-ddvedk  66
            A IGFE+++W AAD LRG+MDAAEYK+V LGLIFLKY+SD FEE+Y+EL  D   D ED+
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ  64

Query  67   dAYTEANIFYVPPIARWSVIAEWAHKTGKITDENGKEEFFDIGGIIDRAMRAIEKENKRL  126
            D Y   NIF VP  ARW  I + A K              +IG IID+AM AIE+EN  L
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKP-------------EIGQIIDKAMIAIENENESL  111

Query  127  KDVLPKNYARSELDKRRLGNVVDLFTNIQMIEHGTDKDILGRTYEYCLAKFAEQEGKRAG  186
            K+VLPK+YAR+ LDK +LG+++DLFT      ++  +D+LGR YEY +AKFA  EGK AG
Sbjct  112  KGVLPKEYARPALDKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAG  171

Query  187  EFYTPSCVVRTLVEVLKPFKGRVYDPCCGSGGMFVQSADFVSHHAGNINNLSIFGQDANP  246
            EFYTPS +V+ LVE++ P+KGR+YDPCCGSGGMFVQS  FV  H G +++++I+GQ++NP
Sbjct  172  EFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNP  231

Query  247  TTRKMALMNLAIRGIEADLGGYNADTFHNDLHPTLKADFILANPPFNLSDWNDGSLNDDP  306
            TT+K+A MNLAIRGI+ DLG  NADTFHNDLH  LKAD+ILANPPFN SDW +  L DD 
Sbjct  232  TTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDY  291

Query  307  RWKYGLPPSGNANFAWLQHMIYHLSPNGKIGMVLANGSLSSQSGGEGDIRRKIVEDDLVE  366
            RW++G+PP GNAN+AW++HMI  L+PNG  G VLANGS+S+ + +E +IR++++E+DLVE
Sbjct  292  RWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVE  351

Query  367  GIVAMPTQLFYTTQIPVSLWFINRNKKQKGKT------LFVDARKMGTMVNRRLREMTTE  420
             IV++P QLFY+TQIPV LWFI+ NK Q+GK       LF+DAR +G MV+R L+E + E
Sbjct  352  CIVTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDE  411

Query  421  DIAKIAATFEAF---DNGTLEDVKGYCAAVTTADIAKQDYILTPGRYVGIEEQEDDGEPF  477
            DI K+A T++A    ++   ED+ G+C      ++ +++YILTPGRYVG+ + E+D EPF
Sbjct  412  DIQKVAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPF  471

Query  478  DEKMARLTSELSEMFKRSHELEDEIRKRLGAIGYDI  513
            ++KM R+TSELSE F +S ELED+IRK L ++GY++
Sbjct  472  EQKMERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

88) FP2_17100 in NC_021042


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  492 bits (1856),  Expect = 1e-140, Method: Compositional matrix adjust.
 Identities = 291/518 (57%), Positives = 393/518 (76%), Gaps = 25/518 (4%)

Query  7    ADIGFEKQIWDAACVLRGNMDASEYKGVVLGLIFLKYISDRFEDKYNQLVADGDGFEEDR  66
            A IGFE ++W+AA  LRG+MDA+EYK V LGLIFLKY+SD FE+KY++L  D  + EED+
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ  64

Query  67   DEYTSEGIFFVPAGARWSDVSAKAHDPEIGQVIDDAMRAIEKENARLKDILPKNFARPEL  126
            DEY +E IF VP  ARW  ++ +A  PEIGQ+ID AM AIE+EN  LK++LPK++ARP L
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  127  DKRRLGEVVDLFTNIKMIEHGSEK-DILGRTYEYCLSMFAEQEGKRGGEFFTPSCVVRTL  185
            DK +LG+++DLFT +K+ +  S K D+LGR YEY ++ FA  EGK +GEF+TPS +V+ L
Sbjct  125  DKEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL  183

Query  186  VEVLQPFKGRVYDPCCGSGGMFVQSAKFVENHSGNINDISIYGQDSNPTTWKLAQMNLAI  245
            VE+++P+KGR+YDPCCGSGGMFVQS +FVE+H G ++DI+IYGQ+SNPTTWKLA+MNLAI
Sbjct  184  VEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAI  243

Query  246  RGIEPDLGKYAADTFLDDQHPTMRADYIMANPPFNLSNWGAEQLKDDVRWQYGMPPASNA  305
            RGI+ DLG   ADTF +D H  ++ADYI+ANPPFN S+WG E+L DD RWQ+G+PP +NA
Sbjct  244  RGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNA  303

Query  306  NFAWLQHMIYHLAPGGRMGMVLANGSLSSQSGGEGDIRKNIVNADLVDCIIAMPTQLFYT  365
            N+AW++HMI  LAP G  G VLANGS+S+ + +E +IRKN+++ DLV+CI+++P QLFY+
Sbjct  304  NYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYS  363

Query  366  TQIPVSLWFISK------RKKRAGKTLFIDARKMGVMVSRKLRELTDGTKEEYKNEDGTS  419
            TQIPV LWFIS+      +K R    LFIDAR +G MVSR L+E++D             
Sbjct  364  TQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSD-------------  410

Query  420  KNDIKKIADTYNAY---VNGTLEDVKGFCAVVDTEKIAEQDYILTPGRYVGVeeqeddge  476
             +DI+K+A+TY+A     +   ED+ GFC V + E + +++YILTPGRYVG+ + E+D E
Sbjct  411  -EDIQKVAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEE  469

Query  477  pfeeKMARLTSELSDLFKQSHKLEAEIKEKLGAIGYEV  514
            PFE+KM R+TSELS+ F +S  LE +I+  L ++GY V
Sbjct  470  PFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

89) Calow_2047 in NC_014657


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  492 bits (1857),  Expect = 1e-140, Method: Compositional matrix adjust.
 Identities = 283/519 (55%), Positives = 388/519 (75%), Gaps = 29/519 (5%)

Query  7    GVLNFASTLWAAADRLRNNMEPSEYKHIVLGLIFLKYISDAFKFRQEELEYLIKDPKNEE  66
            + + F   LW AAD+LR +M+++EYK++ LGLIFLKY+SD+F  + EEL       K++ 
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL-------KQDP  57

Query  67   YYCGSEEEAQLILEDKDEYMAANVFYVPPEARYEYIMANARRSDIGKLIDDAMDLIEKEN  126
            Y   ++EE Q      DEY+A N+F VP EAR +YI  NA++++IG++ID AM  IE+EN
Sbjct  58   Y---ADEEDQ------DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENEN  108

Query  127  PKQLRGVLPKVYTKAPLDPHTLGEIVNLIG-SINFGKNEELDVLGRVYEYFLSEFARKEG  185
               L+GVLPK Y++++LD + LG+I++L+   +    +   DVLGRVYEYF++ FA  EG
Sbjct  109  ES-LKGVLPKEYARPALDKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEG  167

Query  186  KRGGEFFTPSSVVKLLVEMIQPLHGRVFDPCCGSGGMFVQSIRFVEAHAGKKGDISIYGQ  245
            K +GEF+TPSS+VKLLVEMI+P  GR++DPCCGSGGMFVQS RFVE H G+ +DI+IYGQ
Sbjct  168  KNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQ  227

Query  246  ESNPTTYRLCKMNLAIRGIEADI--RLGNSFTDDQFKDLRADYILANPPFNDSAWGADRL  303
            ESNPTT +L KMNLAIRGI+ D+  R +++F +D  K+L+ADYILANPPFN S WG +RL
Sbjct  228  ESNPTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERL  287

Query  304  ANDVRWKYGLPPDSNANYAWIQHFIYHLAPKGVAGFVLANGSMTTSNNAEYEIRKRIIED  363
             +D RW++G+PP +NANYAWI+H I  LAP+G AGFVLANGSM+TS + E EIRK +IE+
Sbjct  288  LDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQ  347

Query  364  NLVDCMVALPPQLFYTTGIPACLWFI--RKGRETK-----ETLFIDARKMGVMVDRTHRE  416
            +LV+C+V+LP QLFY+T IP CLWFI   KG++ K     E LFIDAR +G MV RT +E
Sbjct  348  DLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKE  407

Query  417  LTDEEIQKIAETYHNWRNKSG--YEDLKGFCASVPMEVIAQNDYVLAPGRYVGVEDTQED  474
            ++DE+IQK+A+TYH WR  ++  YED+ GFC    +E + +N+Y+L+PGRYVG+ D +ED
Sbjct  408  FSDEDIQKVAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEED  467

Query  475  DIPFEEKMAELTEKLYQQMKEARRLDEIIKANLEELGYG  513
            + PFE+KM  +T  L +Q   ++ L++ I+ +LE LGYG
Sbjct  468  EEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYG  506

90) hsdM in NC_017105


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  491 bits (1851),  Expect = 4e-140, Method: Compositional matrix adjust.
 Identities = 291/497 (59%), Positives = 394/497 (80%), Gaps = 3/497 (0%)

Query  32   LGFEQQMFLAADKLRKNLEPSDYKHVALGLIFLRYISTAFEARHAELMledpeaaedpde  91
            +GFE+++  AADKLR ++++++YK+VALGLIFL+Y+S +FE +  EL  +     ED DE
Sbjct  7    IGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDE  66

Query  92   ylaeNIFWVPETARWSHLKDNARSANIGKMIDEAMLAIEKANPEQLKGVLPKDYGRPALD  151
            YLAENIFWVP  ARW  ++DNA+ ++IG++ID AM+AIE+ N E LKGVLPK+Y+RPALD
Sbjct  67   YLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENEN-ESLKGVLPKEYARPALD  125

Query  152  TVMLGELIDLISDIGMGDTDDKARDVLGRVYEYFLggfagaegkrggefYTPSSVVRTLV  211
               LG++IDL++ + +GDT+ + +DVLGRVYEYF++ FA+AEGK +GEFYTPSS+V+ LV
Sbjct  126  KEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLV  184

Query  212  SMLEPYKGRVYDPCCGSGGMFVQSERFVETHGGKLGDIAIYGQESNHTTWRLARMNLAVR  271
             M+EPYKGR+YDPCCGSGGMFVQSERFVE H G+L+DIAIYGQESN TTW+LA+MNLA+R
Sbjct  185  EMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIR  244

Query  272  GIGADIRWNNEGSFLRDELKDLRFDYILANPPFNVSDWWNASLEEDPRWQYGKPPAGNAN  331
            GI+ D+   N ++F  D  K+L+ DYILANPPFN SDW +  L +D RWQ+G PP GNAN
Sbjct  245  GIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNAN  304

Query  332  YAWLQHILWHLAPDGTAGVVLANGSMSSNQNSEGEIRRRMVEADVVDCMVALPGQLFYST  391
            YAW++H++  LAP+GTAG VLANGSMS++ + E EIR+ ++E D+V+C+V+LPGQLFYST
Sbjct  305  YAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYST  364

Query  392  QIPACLWFLTRTKNPKGWRDRRGEILFIDARKLGKLVDRTRRELTDEDVARIADTYHAWR  451
            QIP CLWF++  K  +G ++R  EILFIDAR +G +V RT +E++DED+ ++A+TYHAWR
Sbjct  365  QIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWR  424

Query  452  GEKNAGKYEDIPGFCKSATLDEVEQHGFVLTPGRYVGAEEAEEDSVPFTERFAALEKTLK  511
            G ++   YEDI+GFCK A L+EV ++ ++LTPGRYVG  + EED  PF ++   +   L 
Sbjct  425  GTNDKP-YEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELS  483

Query  512  EQFAQGETLNAKITASL  528
            EQFA++  L+ +I  SL
Sbjct  484  EQFAKSKELEDQIRKSL  500

91) hsdM in NC_013211


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  491 bits (1851),  Expect = 4e-140, Method: Compositional matrix adjust.
 Identities = 291/497 (59%), Positives = 394/497 (80%), Gaps = 3/497 (0%)

Query  32   LGFEQQMFLAADKLRKNLEPSDYKHVALGLIFLRYISTAFEARHAELMledpeaaedpde  91
            +GFE+++  AADKLR ++++++YK+VALGLIFL+Y+S +FE +  EL  +     ED DE
Sbjct  7    IGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDE  66

Query  92   ylaeNIFWVPETARWSHLKDNARSANIGKMIDEAMLAIEKANPEQLKGVLPKDYGRPALD  151
            YLAENIFWVP  ARW  ++DNA+ ++IG++ID AM+AIE+ N E LKGVLPK+Y+RPALD
Sbjct  67   YLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENEN-ESLKGVLPKEYARPALD  125

Query  152  TVMLGELIDLISDIGMGDTDDKARDVLGRVYEYFLggfagaegkrggefYTPSSVVRTLV  211
               LG++IDL++ + +GDT+ + +DVLGRVYEYF++ FA+AEGK +GEFYTPSS+V+ LV
Sbjct  126  KEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLV  184

Query  212  SMLEPYKGRVYDPCCGSGGMFVQSERFVETHGGKLGDIAIYGQESNHTTWRLARMNLAVR  271
             M+EPYKGR+YDPCCGSGGMFVQSERFVE H G+L+DIAIYGQESN TTW+LA+MNLA+R
Sbjct  185  EMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIR  244

Query  272  GIGADIRWNNEGSFLRDELKDLRFDYILANPPFNVSDWWNASLEEDPRWQYGKPPAGNAN  331
            GI+ D+   N ++F  D  K+L+ DYILANPPFN SDW +  L +D RWQ+G PP GNAN
Sbjct  245  GIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNAN  304

Query  332  YAWLQHILWHLAPDGTAGVVLANGSMSSNQNSEGEIRRRMVEADVVDCMVALPGQLFYST  391
            YAW++H++  LAP+GTAG VLANGSMS++ + E EIR+ ++E D+V+C+V+LPGQLFYST
Sbjct  305  YAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYST  364

Query  392  QIPACLWFLTRTKNPKGWRDRRGEILFIDARKLGKLVDRTRRELTDEDVARIADTYHAWR  451
            QIP CLWF++  K  +G ++R  EILFIDAR +G +V RT +E++DED+ ++A+TYHAWR
Sbjct  365  QIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWR  424

Query  452  GEKNAGKYEDIPGFCKSATLDEVEQHGFVLTPGRYVGAEEAEEDSVPFTERFAALEKTLK  511
            G ++   YEDI+GFCK A L+EV ++ ++LTPGRYVG  + EED  PF ++   +   L 
Sbjct  425  GTNDKP-YEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELS  483

Query  512  EQFAQGETLNAKITASL  528
            EQFA++  L+ +I  SL
Sbjct  484  EQFAKSKELEDQIRKSL  500

92) hsdM in NC_017118


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  491 bits (1851),  Expect = 4e-140, Method: Compositional matrix adjust.
 Identities = 291/497 (59%), Positives = 394/497 (80%), Gaps = 3/497 (0%)

Query  32   LGFEQQMFLAADKLRKNLEPSDYKHVALGLIFLRYISTAFEARHAELMledpeaaedpde  91
            +GFE+++  AADKLR ++++++YK+VALGLIFL+Y+S +FE +  EL  +     ED DE
Sbjct  7    IGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDE  66

Query  92   ylaeNIFWVPETARWSHLKDNARSANIGKMIDEAMLAIEKANPEQLKGVLPKDYGRPALD  151
            YLAENIFWVP  ARW  ++DNA+ ++IG++ID AM+AIE+ N E LKGVLPK+Y+RPALD
Sbjct  67   YLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENEN-ESLKGVLPKEYARPALD  125

Query  152  TVMLGELIDLISDIGMGDTDDKARDVLGRVYEYFLggfagaegkrggefYTPSSVVRTLV  211
               LG++IDL++ + +GDT+ + +DVLGRVYEYF++ FA+AEGK +GEFYTPSS+V+ LV
Sbjct  126  KEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLV  184

Query  212  SMLEPYKGRVYDPCCGSGGMFVQSERFVETHGGKLGDIAIYGQESNHTTWRLARMNLAVR  271
             M+EPYKGR+YDPCCGSGGMFVQSERFVE H G+L+DIAIYGQESN TTW+LA+MNLA+R
Sbjct  185  EMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIR  244

Query  272  GIGADIRWNNEGSFLRDELKDLRFDYILANPPFNVSDWWNASLEEDPRWQYGKPPAGNAN  331
            GI+ D+   N ++F  D  K+L+ DYILANPPFN SDW +  L +D RWQ+G PP GNAN
Sbjct  245  GIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNAN  304

Query  332  YAWLQHILWHLAPDGTAGVVLANGSMSSNQNSEGEIRRRMVEADVVDCMVALPGQLFYST  391
            YAW++H++  LAP+GTAG VLANGSMS++ + E EIR+ ++E D+V+C+V+LPGQLFYST
Sbjct  305  YAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYST  364

Query  392  QIPACLWFLTRTKNPKGWRDRRGEILFIDARKLGKLVDRTRRELTDEDVARIADTYHAWR  451
            QIP CLWF++  K  +G ++R  EILFIDAR +G +V RT +E++DED+ ++A+TYHAWR
Sbjct  365  QIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWR  424

Query  452  GEKNAGKYEDIPGFCKSATLDEVEQHGFVLTPGRYVGAEEAEEDSVPFTERFAALEKTLK  511
            G ++   YEDI+GFCK A L+EV ++ ++LTPGRYVG  + EED  PF ++   +   L 
Sbjct  425  GTNDKP-YEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELS  483

Query  512  EQFAQGETLNAKITASL  528
            EQFA++  L+ +I  SL
Sbjct  484  EQFAKSKELEDQIRKSL  500

93) hsdM in NC_017122


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  491 bits (1851),  Expect = 4e-140, Method: Compositional matrix adjust.
 Identities = 291/497 (59%), Positives = 394/497 (80%), Gaps = 3/497 (0%)

Query  32   LGFEQQMFLAADKLRKNLEPSDYKHVALGLIFLRYISTAFEARHAELMledpeaaedpde  91
            +GFE+++  AADKLR ++++++YK+VALGLIFL+Y+S +FE +  EL  +     ED DE
Sbjct  7    IGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDE  66

Query  92   ylaeNIFWVPETARWSHLKDNARSANIGKMIDEAMLAIEKANPEQLKGVLPKDYGRPALD  151
            YLAENIFWVP  ARW  ++DNA+ ++IG++ID AM+AIE+ N E LKGVLPK+Y+RPALD
Sbjct  67   YLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENEN-ESLKGVLPKEYARPALD  125

Query  152  TVMLGELIDLISDIGMGDTDDKARDVLGRVYEYFLggfagaegkrggefYTPSSVVRTLV  211
               LG++IDL++ + +GDT+ + +DVLGRVYEYF++ FA+AEGK +GEFYTPSS+V+ LV
Sbjct  126  KEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLV  184

Query  212  SMLEPYKGRVYDPCCGSGGMFVQSERFVETHGGKLGDIAIYGQESNHTTWRLARMNLAVR  271
             M+EPYKGR+YDPCCGSGGMFVQSERFVE H G+L+DIAIYGQESN TTW+LA+MNLA+R
Sbjct  185  EMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIR  244

Query  272  GIGADIRWNNEGSFLRDELKDLRFDYILANPPFNVSDWWNASLEEDPRWQYGKPPAGNAN  331
            GI+ D+   N ++F  D  K+L+ DYILANPPFN SDW +  L +D RWQ+G PP GNAN
Sbjct  245  GIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNAN  304

Query  332  YAWLQHILWHLAPDGTAGVVLANGSMSSNQNSEGEIRRRMVEADVVDCMVALPGQLFYST  391
            YAW++H++  LAP+GTAG VLANGSMS++ + E EIR+ ++E D+V+C+V+LPGQLFYST
Sbjct  305  YAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYST  364

Query  392  QIPACLWFLTRTKNPKGWRDRRGEILFIDARKLGKLVDRTRRELTDEDVARIADTYHAWR  451
            QIP CLWF++  K  +G ++R  EILFIDAR +G +V RT +E++DED+ ++A+TYHAWR
Sbjct  365  QIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWR  424

Query  452  GEKNAGKYEDIPGFCKSATLDEVEQHGFVLTPGRYVGAEEAEEDSVPFTERFAALEKTLK  511
            G ++   YEDI+GFCK A L+EV ++ ++LTPGRYVG  + EED  PF ++   +   L 
Sbjct  425  GTNDKP-YEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELS  483

Query  512  EQFAQGETLNAKITASL  528
            EQFA++  L+ +I  SL
Sbjct  484  EQFAKSKELEDQIRKSL  500

94) hsdM in NC_017113


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  491 bits (1851),  Expect = 4e-140, Method: Compositional matrix adjust.
 Identities = 291/497 (59%), Positives = 394/497 (80%), Gaps = 3/497 (0%)

Query  32   LGFEQQMFLAADKLRKNLEPSDYKHVALGLIFLRYISTAFEARHAELMledpeaaedpde  91
            +GFE+++  AADKLR ++++++YK+VALGLIFL+Y+S +FE +  EL  +     ED DE
Sbjct  7    IGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDE  66

Query  92   ylaeNIFWVPETARWSHLKDNARSANIGKMIDEAMLAIEKANPEQLKGVLPKDYGRPALD  151
            YLAENIFWVP  ARW  ++DNA+ ++IG++ID AM+AIE+ N E LKGVLPK+Y+RPALD
Sbjct  67   YLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENEN-ESLKGVLPKEYARPALD  125

Query  152  TVMLGELIDLISDIGMGDTDDKARDVLGRVYEYFLggfagaegkrggefYTPSSVVRTLV  211
               LG++IDL++ + +GDT+ + +DVLGRVYEYF++ FA+AEGK +GEFYTPSS+V+ LV
Sbjct  126  KEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLV  184

Query  212  SMLEPYKGRVYDPCCGSGGMFVQSERFVETHGGKLGDIAIYGQESNHTTWRLARMNLAVR  271
             M+EPYKGR+YDPCCGSGGMFVQSERFVE H G+L+DIAIYGQESN TTW+LA+MNLA+R
Sbjct  185  EMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIR  244

Query  272  GIGADIRWNNEGSFLRDELKDLRFDYILANPPFNVSDWWNASLEEDPRWQYGKPPAGNAN  331
            GI+ D+   N ++F  D  K+L+ DYILANPPFN SDW +  L +D RWQ+G PP GNAN
Sbjct  245  GIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNAN  304

Query  332  YAWLQHILWHLAPDGTAGVVLANGSMSSNQNSEGEIRRRMVEADVVDCMVALPGQLFYST  391
            YAW++H++  LAP+GTAG VLANGSMS++ + E EIR+ ++E D+V+C+V+LPGQLFYST
Sbjct  305  YAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYST  364

Query  392  QIPACLWFLTRTKNPKGWRDRRGEILFIDARKLGKLVDRTRRELTDEDVARIADTYHAWR  451
            QIP CLWF++  K  +G ++R  EILFIDAR +G +V RT +E++DED+ ++A+TYHAWR
Sbjct  365  QIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWR  424

Query  452  GEKNAGKYEDIPGFCKSATLDEVEQHGFVLTPGRYVGAEEAEEDSVPFTERFAALEKTLK  511
            G ++   YEDI+GFCK A L+EV ++ ++LTPGRYVG  + EED  PF ++   +   L 
Sbjct  425  GTNDKP-YEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELS  483

Query  512  EQFAQGETLNAKITASL  528
            EQFA++  L+ +I  SL
Sbjct  484  EQFAKSKELEDQIRKSL  500

95) hsdM in NC_017126


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  491 bits (1851),  Expect = 4e-140, Method: Compositional matrix adjust.
 Identities = 291/497 (59%), Positives = 394/497 (80%), Gaps = 3/497 (0%)

Query  32   LGFEQQMFLAADKLRKNLEPSDYKHVALGLIFLRYISTAFEARHAELMledpeaaedpde  91
            +GFE+++  AADKLR ++++++YK+VALGLIFL+Y+S +FE +  EL  +     ED DE
Sbjct  7    IGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDE  66

Query  92   ylaeNIFWVPETARWSHLKDNARSANIGKMIDEAMLAIEKANPEQLKGVLPKDYGRPALD  151
            YLAENIFWVP  ARW  ++DNA+ ++IG++ID AM+AIE+ N E LKGVLPK+Y+RPALD
Sbjct  67   YLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENEN-ESLKGVLPKEYARPALD  125

Query  152  TVMLGELIDLISDIGMGDTDDKARDVLGRVYEYFLggfagaegkrggefYTPSSVVRTLV  211
               LG++IDL++ + +GDT+ + +DVLGRVYEYF++ FA+AEGK +GEFYTPSS+V+ LV
Sbjct  126  KEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLV  184

Query  212  SMLEPYKGRVYDPCCGSGGMFVQSERFVETHGGKLGDIAIYGQESNHTTWRLARMNLAVR  271
             M+EPYKGR+YDPCCGSGGMFVQSERFVE H G+L+DIAIYGQESN TTW+LA+MNLA+R
Sbjct  185  EMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIR  244

Query  272  GIGADIRWNNEGSFLRDELKDLRFDYILANPPFNVSDWWNASLEEDPRWQYGKPPAGNAN  331
            GI+ D+   N ++F  D  K+L+ DYILANPPFN SDW +  L +D RWQ+G PP GNAN
Sbjct  245  GIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNAN  304

Query  332  YAWLQHILWHLAPDGTAGVVLANGSMSSNQNSEGEIRRRMVEADVVDCMVALPGQLFYST  391
            YAW++H++  LAP+GTAG VLANGSMS++ + E EIR+ ++E D+V+C+V+LPGQLFYST
Sbjct  305  YAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYST  364

Query  392  QIPACLWFLTRTKNPKGWRDRRGEILFIDARKLGKLVDRTRRELTDEDVARIADTYHAWR  451
            QIP CLWF++  K  +G ++R  EILFIDAR +G +V RT +E++DED+ ++A+TYHAWR
Sbjct  365  QIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWR  424

Query  452  GEKNAGKYEDIPGFCKSATLDEVEQHGFVLTPGRYVGAEEAEEDSVPFTERFAALEKTLK  511
            G ++   YEDI+GFCK A L+EV ++ ++LTPGRYVG  + EED  PF ++   +   L 
Sbjct  425  GTNDKP-YEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELS  483

Query  512  EQFAQGETLNAKITASL  528
            EQFA++  L+ +I  SL
Sbjct  484  EQFAKSKELEDQIRKSL  500

96) hsdM in NC_017131


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  491 bits (1851),  Expect = 4e-140, Method: Compositional matrix adjust.
 Identities = 291/497 (59%), Positives = 394/497 (80%), Gaps = 3/497 (0%)

Query  32   LGFEQQMFLAADKLRKNLEPSDYKHVALGLIFLRYISTAFEARHAELMledpeaaedpde  91
            +GFE+++  AADKLR ++++++YK+VALGLIFL+Y+S +FE +  EL  +     ED DE
Sbjct  7    IGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDE  66

Query  92   ylaeNIFWVPETARWSHLKDNARSANIGKMIDEAMLAIEKANPEQLKGVLPKDYGRPALD  151
            YLAENIFWVP  ARW  ++DNA+ ++IG++ID AM+AIE+ N E LKGVLPK+Y+RPALD
Sbjct  67   YLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENEN-ESLKGVLPKEYARPALD  125

Query  152  TVMLGELIDLISDIGMGDTDDKARDVLGRVYEYFLggfagaegkrggefYTPSSVVRTLV  211
               LG++IDL++ + +GDT+ + +DVLGRVYEYF++ FA+AEGK +GEFYTPSS+V+ LV
Sbjct  126  KEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLV  184

Query  212  SMLEPYKGRVYDPCCGSGGMFVQSERFVETHGGKLGDIAIYGQESNHTTWRLARMNLAVR  271
             M+EPYKGR+YDPCCGSGGMFVQSERFVE H G+L+DIAIYGQESN TTW+LA+MNLA+R
Sbjct  185  EMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIR  244

Query  272  GIGADIRWNNEGSFLRDELKDLRFDYILANPPFNVSDWWNASLEEDPRWQYGKPPAGNAN  331
            GI+ D+   N ++F  D  K+L+ DYILANPPFN SDW +  L +D RWQ+G PP GNAN
Sbjct  245  GIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNAN  304

Query  332  YAWLQHILWHLAPDGTAGVVLANGSMSSNQNSEGEIRRRMVEADVVDCMVALPGQLFYST  391
            YAW++H++  LAP+GTAG VLANGSMS++ + E EIR+ ++E D+V+C+V+LPGQLFYST
Sbjct  305  YAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYST  364

Query  392  QIPACLWFLTRTKNPKGWRDRRGEILFIDARKLGKLVDRTRRELTDEDVARIADTYHAWR  451
            QIP CLWF++  K  +G ++R  EILFIDAR +G +V RT +E++DED+ ++A+TYHAWR
Sbjct  365  QIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWR  424

Query  452  GEKNAGKYEDIPGFCKSATLDEVEQHGFVLTPGRYVGAEEAEEDSVPFTERFAALEKTLK  511
            G ++   YEDI+GFCK A L+EV ++ ++LTPGRYVG  + EED  PF ++   +   L 
Sbjct  425  GTNDKP-YEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELS  483

Query  512  EQFAQGETLNAKITASL  528
            EQFA++  L+ +I  SL
Sbjct  484  EQFAKSKELEDQIRKSL  500

97) hsdM in NC_017149


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  491 bits (1851),  Expect = 4e-140, Method: Compositional matrix adjust.
 Identities = 291/497 (59%), Positives = 394/497 (80%), Gaps = 3/497 (0%)

Query  32   LGFEQQMFLAADKLRKNLEPSDYKHVALGLIFLRYISTAFEARHAELMledpeaaedpde  91
            +GFE+++  AADKLR ++++++YK+VALGLIFL+Y+S +FE +  EL  +     ED DE
Sbjct  7    IGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDE  66

Query  92   ylaeNIFWVPETARWSHLKDNARSANIGKMIDEAMLAIEKANPEQLKGVLPKDYGRPALD  151
            YLAENIFWVP  ARW  ++DNA+ ++IG++ID AM+AIE+ N E LKGVLPK+Y+RPALD
Sbjct  67   YLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENEN-ESLKGVLPKEYARPALD  125

Query  152  TVMLGELIDLISDIGMGDTDDKARDVLGRVYEYFLggfagaegkrggefYTPSSVVRTLV  211
               LG++IDL++ + +GDT+ + +DVLGRVYEYF++ FA+AEGK +GEFYTPSS+V+ LV
Sbjct  126  KEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLV  184

Query  212  SMLEPYKGRVYDPCCGSGGMFVQSERFVETHGGKLGDIAIYGQESNHTTWRLARMNLAVR  271
             M+EPYKGR+YDPCCGSGGMFVQSERFVE H G+L+DIAIYGQESN TTW+LA+MNLA+R
Sbjct  185  EMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIR  244

Query  272  GIGADIRWNNEGSFLRDELKDLRFDYILANPPFNVSDWWNASLEEDPRWQYGKPPAGNAN  331
            GI+ D+   N ++F  D  K+L+ DYILANPPFN SDW +  L +D RWQ+G PP GNAN
Sbjct  245  GIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNAN  304

Query  332  YAWLQHILWHLAPDGTAGVVLANGSMSSNQNSEGEIRRRMVEADVVDCMVALPGQLFYST  391
            YAW++H++  LAP+GTAG VLANGSMS++ + E EIR+ ++E D+V+C+V+LPGQLFYST
Sbjct  305  YAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYST  364

Query  392  QIPACLWFLTRTKNPKGWRDRRGEILFIDARKLGKLVDRTRRELTDEDVARIADTYHAWR  451
            QIP CLWF++  K  +G ++R  EILFIDAR +G +V RT +E++DED+ ++A+TYHAWR
Sbjct  365  QIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWR  424

Query  452  GEKNAGKYEDIPGFCKSATLDEVEQHGFVLTPGRYVGAEEAEEDSVPFTERFAALEKTLK  511
            G ++   YEDI+GFCK A L+EV ++ ++LTPGRYVG  + EED  PF ++   +   L 
Sbjct  425  GTNDKP-YEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELS  483

Query  512  EQFAQGETLNAKITASL  528
            EQFA++  L+ +I  SL
Sbjct  484  EQFAKSKELEDQIRKSL  500

98) CLS_14440 in NC_021047


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  490 bits (1848),  Expect = 6e-140, Method: Compositional matrix adjust.
 Identities = 300/503 (60%), Positives = 394/503 (79%), Gaps = 9/503 (1%)

Query  7    AAIGFEKQIWDAACVLRGNMDASEYKNVVLGLIFLKYISDRFDEKYKALVeegdgfeedi  66
            A+IGFE ++W+AA  LRG+MDA+EYKNV LGLIFLKY+SD F+EKY  L ++  + EED 
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ  64

Query  67   deYTSEGIFFVPAGARWRDIAAKAHTPEIGTVIDDAMRAIEKENKRLKDILPKNFARPEL  126
            DEY +E IF VP  ARW+ I  +A  PEIG +ID AM AIE+EN  LK++LPK++ARP L
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  127  DKRRLGDVVDLFTNIQMIEHGSEKDILGRTYEYCLSMFAEQEGKRGGEFFTPSCVVRTLV  186
            DK +LGD++DLFT      ++  +D+LGR YEY ++ FA  EGK +GEF+TPS +V+ LV
Sbjct  125  DKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLV  184

Query  187  EVLKPFKGRVYDPCCGSGGMFVQSAKFVENHSGNISNISIYGQDSNPTTWKLAQMNLAIR  246
            E++ P+KGR+YDPCCGSGGMFVQS +FVE+H G + +I+IYGQ+SNPTTWKLA+MNLAIR
Sbjct  185  EMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIR  244

Query  247  GIEPDLGPYAADTFLKDCHPTLRADYIMANPPFNLSDWGLDKLKEDQRWKYGTPPAGNAN  306
            GI+ DLG   ADTF +D H  L+ADYI+ANPPFN SDWG ++L +D RW++G PP GNAN
Sbjct  245  GIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNAN  304

Query  307  FAWLQHMIYHLAPAGRIGMVLANgslssqsggegeIRKNIINADLVECIVAMPTQLFYTT  366
            +AW++HMI  LAP G  G VLANGS+S+ + +E EIRKN+I+ DLVECIV++P QLFY+T
Sbjct  305  YAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYST  364

Query  367  QIPVSLWFINKQKKQSGKT------LFIDARKMGTMVNRKLRELTDADINKISDTYEAF-  419
            QIPV LWFI+++K Q+GK       LFIDAR +G MV+R L+E++D DI+K+++TY+A  
Sbjct  365  QIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWR  424

Query  420  --VDGTLENIKGFCAVADTAEIEKQNYILTPGRYVGIeeqeeddepfeeKMTRLTSELSN  477
               D   E+I GFC VA+  E+ +++YILTPGRYVG+ + EED+EPFE+KM R+TSELS+
Sbjct  425  GTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSE  484

Query  478  MFAKSHELEDEIRKKLGAIGYEV  500
             FAKS ELED+IRK L ++GY V
Sbjct  485  QFAKSKELEDQIRKSLEGLGYGV  507

99) Zmob_1779 in NC_017180


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  490 bits (1847),  Expect = 8e-140, Method: Compositional matrix adjust.
 Identities = 297/497 (60%), Positives = 394/497 (80%), Gaps = 3/497 (0%)

Query  29   LGFEQQMFLAADKLRKNLEPSDYKHVALGLIFLRYISTAFEARHValmlddpaaaedpde  88
            +GFE+++  AADKLR ++++++YK+VALGLIFL+Y+S +FE +   L  D  A  ED DE
Sbjct  7    IGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDE  66

Query  89   ylaeNIFWVPETARWSHLRDNARSPSIGKIIDEAMLAIEKANPEQLKGVLPKDYGRPALD  148
            YLAENIFWVP  ARW  + DNA+ P IG+IID AM+AIE+ N E LKGVLPK+Y+RPALD
Sbjct  67   YLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENEN-ESLKGVLPKEYARPALD  125

Query  149  SVMLGELIDLISDIGMGDTDDKARDVLGRVYEYFLggfagaegkrggefYTPSSVVRTLV  208
               LG++IDL++ + +GDT+ + +DVLGRVYEYF++ FA+AEGK +GEFYTPSS+V+ LV
Sbjct  126  KEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLV  184

Query  209  SMLEPYKGRVYDPCCGSGGMFVQSERFVETHGGKLGDIAIYGQESNHTTWRLARMNLAVR  268
             M+EPYKGR+YDPCCGSGGMFVQSERFVE H G+L+DIAIYGQESN TTW+LA+MNLA+R
Sbjct  185  EMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIR  244

Query  269  GIGADIRWNNEGSFLRDELKDLRFDYILANPPFNVSDWWNASLEEDPRWQYGKPPAGNAN  328
            GI+ D+   N ++F  D  K+L+ DYILANPPFN SDW +  L +D RWQ+G PP GNAN
Sbjct  245  GIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNAN  304

Query  329  YAWLQHILWHLAPDGTAGVVLANGSMSSNQNSEGEIRRRMVEADVVDCMVALPGQLFYST  388
            YAW++H++  LAP+GTAG VLANGSMS++ + E EIR+ ++E D+V+C+V+LPGQLFYST
Sbjct  305  YAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYST  364

Query  389  QIPACLWFLTRTKKQKGWRDRGGEILFIDARKLGKLVDRTRRELTDEDVARIADTYHAWR  448
            QIP CLWF++  K Q+G ++R  EILFIDAR +G +V RT +E++DED+ ++A+TYHAWR
Sbjct  365  QIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWR  424

Query  449  GEKDAGTYEDISGFCKSATLDEVAHQGFVLTPGRYVGAEEVEEDSVPFTERFAALEKTLK  508
            G +D   YEDI+GFCK A L+EV ++ ++LTPGRYVG  +VEED  PF ++   +   L 
Sbjct  425  GTNDK-PYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELS  483

Query  509  EQFAQGEALNAKIIGSL  525
            EQFA++  L+ +I  SL
Sbjct  484  EQFAKSKELEDQIRKSL  500

100) Pcryo_1359 in NC_007969


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  489 bits (1844),  Expect = 1e-139, Method: Compositional matrix adjust.
 Identities = 276/514 (54%), Positives = 388/514 (76%), Gaps = 16/514 (3%)

Query  16   NFEEALWDAANKLRGSVESSEYKHIVLSLIFLKFISDTFEQQRQKLIDTGYEKHINMVQA  75
             FEE LW+AA+KLRGS++++EYK++ L+LIFLK++SD+FE++ + L +  Y  + +  + 
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ-DE  66

Query  76   YTKDNVFYLPEESRWSFIQQNAKQEDIALKIDTALSTIEKTNQSLKGALPDNYFSRLGLT  135
            Y  +N+F +P E+RW +I++NAK+ +I+  ID A+ +IE+ N+SLKG LP +Y +R +L 
Sbjct  67   YLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEY-ARPALD  125

Query  136  ASKLAALIDVVN-NIDTIGNPEEDTVGRVYEYFLGKFAATEGKGGGEFYTPKSVVNLIAE  194
              KL+ +ID+   +++   +  +D +GRVYEYF++KFA++EGK +GEFYTP S+V+L+ E
Sbjct  126  KEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVE  185

Query  195  MVEPYQGKIYDPCCGSGGMFVQSIKFIESHHGNTKDVSIYGQEYTSTTYKLAKMNLAIRG  254
            M+EPY+G+IYDPCCGSGGMFVQS +F+E H+G   D++IYGQE  +TT KLAKMNLAIRG
Sbjct  186  MIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRG  245

Query  255  ISSNLGDVAADTFFKDQHEDLKADFIMANPPFNQKDWRASDELVDDPRWAGYPTPPTGNA  314
            I ++LG+  ADTF +D H +LKAD+I+ANPPFN  DW + + L+DD RW  +  PP GNA
Sbjct  246  IDNDLGERNADTFHNDLHKGLKADYILANPPFNASDW-GQERLLDDYRWQ-FGIPPKGNA  303

Query  315  NYAWILHMISKLSEHGTAGFVLANGSMSTTTSGEGEIREQIIKNDLVDCMIALPGQLFYT  374
            NYAWI HMISKL+ +GTAGFVLANGSMST+  +E EIR ++I +DLV+C+++LPGQLFY+
Sbjct  304  NYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYS  363

Query  375  TQIPVCLWFISKDKQATSADSKAKGLRNRSGETLFIDARNIGAMIDRTHKEFSTDDIEAI  434
            TQIPVCLWFIS++K         +G ++R  E LFIDAR+IG M+ RT KEFS +DI+ +
Sbjct  364  TQIPVCLWFISNNKG-------QNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKV  416

Query  435  AKTYHAWRgekeaggyeayadeagyCKSASLDDIKANDYVLTPGRYVGAAAIEDDGIPFE  494
            A+TYHAWR    +    +Y D AG+CK A+L+++K N+Y+LTPGRYVG A +E+D  PFE
Sbjct  417  AQTYHAWR----GTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFE  472

Query  495  TKMLELSQTLYAQMQESEKLDATIRQNLEVLGYG  528
             KM  ++  L  Q   S  L+  IR++LE LGYG
Sbjct  473  QKMERITSELSEQFAKSKELEDQIRKSLEGLGYG  506

101) PSYCG_07145 in NC_021661


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  489 bits (1844),  Expect = 1e-139, Method: Compositional matrix adjust.
 Identities = 276/514 (54%), Positives = 388/514 (76%), Gaps = 16/514 (3%)

Query  16   NFEEALWDAANKLRGSVESSEYKHIVLSLIFLKFISDTFEQQRQKLIDTGYEKHINMVQA  75
             FEE LW+AA+KLRGS++++EYK++ L+LIFLK++SD+FE++ + L +  Y  + +  + 
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ-DE  66

Query  76   YTKDNVFYLPEESRWSFIQQNAKQEDIALKIDTALSTIEKTNQSLKGALPDNYFSRLGLT  135
            Y  +N+F +P E+RW +I++NAK+ +I+  ID A+ +IE+ N+SLKG LP +Y +R +L 
Sbjct  67   YLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEY-ARPALD  125

Query  136  ASKLAALIDVVN-NIDTIGNPEEDTVGRVYEYFLGKFAATEGKGGGEFYTPKSVVNLIAE  194
              KL+ +ID+   +++   +  +D +GRVYEYF++KFA++EGK +GEFYTP S+V+L+ E
Sbjct  126  KEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVE  185

Query  195  MVEPYQGKIYDPCCGSGGMFVQSIKFIESHHGNTKDVSIYGQEYTSTTYKLAKMNLAIRG  254
            M+EPY+G+IYDPCCGSGGMFVQS +F+E H+G   D++IYGQE  +TT KLAKMNLAIRG
Sbjct  186  MIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRG  245

Query  255  ISSNLGDVAADTFFKDQHEDLKADFIMANPPFNQKDWRASDELVDDPRWAGYPTPPTGNA  314
            I ++LG+  ADTF +D H +LKAD+I+ANPPFN  DW + + L+DD RW  +  PP GNA
Sbjct  246  IDNDLGERNADTFHNDLHKGLKADYILANPPFNASDW-GQERLLDDYRWQ-FGIPPKGNA  303

Query  315  NYAWILHMISKLSEHGTAGFVLANGSMSTTTSGEGEIREQIIKNDLVDCMIALPGQLFYT  374
            NYAWI HMISKL+ +GTAGFVLANGSMST+  +E EIR ++I +DLV+C+++LPGQLFY+
Sbjct  304  NYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYS  363

Query  375  TQIPVCLWFISKDKQATSADSKAKGLRNRSGETLFIDARNIGAMIDRTHKEFSTDDIEAI  434
            TQIPVCLWFIS++K         +G ++R  E LFIDAR+IG M+ RT KEFS +DI+ +
Sbjct  364  TQIPVCLWFISNNKG-------QNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKV  416

Query  435  AKTYHAWRgekeaggyeayadeagyCKSASLDDIKANDYVLTPGRYVGAAAIEDDGIPFE  494
            A+TYHAWR    +    +Y D AG+CK A+L+++K N+Y+LTPGRYVG A +E+D  PFE
Sbjct  417  AQTYHAWR----GTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFE  472

Query  495  TKMLELSQTLYAQMQESEKLDATIRQNLEVLGYG  528
             KM  ++  L  Q   S  L+  IR++LE LGYG
Sbjct  473  QKMERITSELSEQFAKSKELEDQIRKSLEGLGYG  506

102) FP2_13100 in NC_021042


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  488 bits (1840),  Expect = 3e-139, Method: Compositional matrix adjust.
 Identities = 298/503 (60%), Positives = 396/503 (79%), Gaps = 9/503 (1%)

Query  7    SNIGFEKQIWDAACVLRGNIDASEYKSVVLGLIFLKYISDRFEAKYKELVeegdgfeedq  66
            + IGFE ++W+AA  LRG++DA+EYK+V LGLIFLKY+SD FE KY EL ++  + EEDQ
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ  64

Query  67   deYTAENIFFVPENARWSAIAAAAHTPEIGTVIDDAMRSIEKENKRLKDILPKNFARPEL  126
            DEY AENIF VP +ARW  I   A  PEIG +ID AM +IE+EN  LK++LPK++ARP L
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  127  DKRRLGEVVDLFTNIQMIEHGNSKDILGRTYEYCLSKFAEQEGKLAGEFYTPSCVVRTLV  186
            DK +LG+++DLFT      ++  +D+LGR YEY ++KFA  EGK AGEFYTPS +V+ LV
Sbjct  125  DKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLV  184

Query  187  EVLQPFNGRVYDPCCGSGGMFVQSAKFIENHGGNINKISVFGQDSNPTTWKMAQMNLAIR  246
            E+++P++GR+YDPCCGSGGMFVQS +F+E+H G ++ I+++GQ+SNPTTWK+A+MNLAIR
Sbjct  185  EMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIR  244

Query  247  GIEADLGKFNADTFFNDCHPQLKADFIMANPPFNLSGWGADKLVDDVRWQYGTPPAGNAN  306
            GI+ DLG  NADTF ND H  LKAD+I+ANPPFN S+WG ++L+DD RWQ+G PP GNAN
Sbjct  245  GIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNAN  304

Query  307  FAWLQHMIWHLAPNGRIGMVLANgslssqsggegeIRKNIINADLVDCIVAMPTQLFYTT  366
            +AW++HMI  LAPNG  G VLANGS+S+ + +E EIRKN+I+ DLV+CIV++P QLFY+T
Sbjct  305  YAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYST  364

Query  367  QIPVSLWFLAKNKKQKGKT------LFIDARKLGTMVTRKLRELTDEDIKKIADTYNAF-  419
            QIPV LWF+++NK Q+GK       LFIDAR +G MV+R L+E++DEDI+K+A+TY+A  
Sbjct  365  QIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWR  424

Query  420  --VDGTLEDEKGFCAVVTTQDIAKQDYILTPGRYVGIeeqeddgepfeeKMGRLTSELSE  477
               D   ED  GFC V   +++ +++YILTPGRYVG+ + E+D EPFE+KM R+TSELSE
Sbjct  425  GTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSE  484

Query  478  LFAKSHELETQIKERLGAIGYGL  500
             FAKS ELE QI+  L ++GYG+
Sbjct  485  QFAKSKELEDQIRKSLEGLGYGV  507

103) MM_2198 in NC_003901


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  488 bits (1839),  Expect = 3e-139, Method: Compositional matrix adjust.
 Identities = 271/460 (59%), Positives = 373/460 (82%), Gaps = 7/460 (1%)

Query  4    FEKQLWKAADKLRKNIDAAEYKHIVLGLIFLRYISDAFEELYEKLQQGEGEYAGADPEDR  63
            FE +LW+AADKLR ++DAAEYK++ LGLIFL+Y+SD+FEE YE L+Q+   YA  D ED+
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDP--YA--DEEDQ  64

Query  64   DEYKAENVFFVPAISRWPYLQSEAKKPDIGKSVDNAMDAIEKENPLLRGVLPKVFARGNL  123
            DEY AEN+F VP  +RW Y++ +AKKP+IG+ +D+AM AIE+EN  L+GVLPK +AR  L
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  124  DPTNLGGLIDLVSNVALGDAKSRSADVLGHVFEYFLGEFALAEGKKGGQFYTPRSVVELL  183
            D  +LG++IDL +   +GD+ SR  DVLG+V+EYF++ FA AEGK++G+FYTP S+V LL
Sbjct  125  DKEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL  183

Query  184  VEMLEPYNGRVFDPCCGSGGMFVQSEKFVADHQGKINDISIYGQESNQTTWRLAKMNLAI  243
            VEM+EPY+GR++DPCCGSGGMFVQSE+FV  HQG+++DI+IYGQESN TTW+LAKMNLAI
Sbjct  184  VEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAI  243

Query  244  RSIDSSQVKWNNEGSFLNDVHKDLKADYVIANPPFNDSDWSGDLLRKDGRWKYGVPPAGN  303
            R+ID+    +N + +F ND+HK+LKADY++ANPPFN SDW+ + L  D RW++G+PP GN
Sbjct  244  RGIDNDLGERNAD-TFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGN  302

Query  304  ANYAWIQHFLYHLGPSGQAGFVLAKGSLTSKSSGEGDIRKELVEARLVDCIVNLPPKLFL  363
            ANYAWI+H +  L+P+G AGFVLA+GS+++ + +E +IRK+L+E  LV+CIV LP +LF 
Sbjct  303  ANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFY  362

Query  364  NTQIPASLWFLSRNKANGKHRNRTDEILFIDARNMGHLINRRTREFSPEDIQQIAGTYHK  423
            +TQIP  LWF+S NK++   ++R +EILFIDAR++GH+++R  +EFS EDIQ++A TYH 
Sbjct  363  STQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHA  422

Query  424  WRNPEGN-YEDVKGFCNSAPIERVRELGYVLTPGRYVGLP  462
            WR  +++ YED+ GFC+ A +E V++  Y+LTPGRYVGL+
Sbjct  423  WRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLA  462

104) alr4597 in NC_003272


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  488 bits (1840),  Expect = 3e-139, Method: Compositional matrix adjust.
 Identities = 288/509 (57%), Positives = 405/509 (80%), Gaps = 10/509 (1%)

Query  13   SFEQKLWKAADKLRKNIDAAEYKHIVLGLIFLKYISDAFEELHQKLLAGEGDYAGANPED  72
            +FE+KLW+AADKLR ++DAAEYK++ LGLIFLKY+SD+FEE  + L   ++ YA  + ED
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL--KQDPYA--DEED  63

Query  73   RDEYSAENVFFVPVEARWSYLQGQAKQPDIGKTVDLAMEAIEQENAKRLKGILPKVYGQQ  132
            +DEY AEN+F VP EARW Y++++AK+P+IG+ +D AM AIE+EN   LKG+LPK Y++ 
Sbjct  64   QDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENES-LKGVLPKEYARP  122

Query  133  KLDQKSLGGLIDLIGSITLGDAEAQAQDVLGRVYEYFLGQFALAEGKKGGQFYTPESIVK  192
             LD+  LG++IDL+ ++ +GD+E++ QDVLGRVYEYF+++FA AEGK++G+FYTP SIVK
Sbjct  123  ALDKEKLGDIIDLF-TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVK  181

Query  193  LLVEMLEPYNGRVFDPCCGSGGMFVQSEKFVKNHQGRLDDISIYGQESNETTYKLCRMNL  252
            LLVEM+EPY+GR++DPCCGSGGMFVQSE+FV +HQGRLDDI+IYGQESN TT KL +MNL
Sbjct  182  LLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNL  241

Query  253  AIRGIDGSNIKWNPEGSFLNDAHKDLKADFVIANPPFNDSDWGGELLRNDGRWLDKDLVP  312
            AIRGID     +N++ +F ND HK+LKAD+++ANPPFN SDWG E L +D RW  +  +P
Sbjct  242  AIRGIDNDLGERNAD-TFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRW--QFGIP  298

Query  313  PVGNANFAWVSHFIYHLAPTGSAGFVlsngslssntsgEGDIRKALVQKDLVDCIVMLPT  372
            P GNAN+AW+ H I  LAP G+AGFVL+NGS+S++  +E +IRK L+++DLV+CIV LP 
Sbjct  299  PKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPG  358

Query  373  QLFYNTGIPACLWFLSRYKNGNKNRDRHGEVLFIDASELGYMVNRSSRAFTEAEISKIAD  432
            QLFY+T IP CLWF+S  K  N +++R+ E+LFIDA E+G MV+R+ + F++ +I K+A+
Sbjct  359  QLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQ  418

Query  433  TYHEWKKSGG-SYRDIKGFCKSASIAEIEKHNFVLTPGRYVGIPDEVEDGVSFEEKMSEL  491
            TYH W+ + + +Y DI GFCK A++ E+ +++++LTPGRYVG++D  ED  +FE+KM  +
Sbjct  419  TYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERI  478

Query  492  TMALGEQMREGQLLDEEIKKQLLKVGFIV  520
            T  L+EQ   ++ L+++I+K L  +G+ V
Sbjct  479  TSELSEQFAKSKELEDQIRKSLEGLGYGV  507

105) ECS88_4968 in NC_011742


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  488 bits (1839),  Expect = 4e-139, Method: Compositional matrix adjust.
 Identities = 281/525 (54%), Positives = 391/525 (75%), Gaps = 26/525 (4%)

Query  14   GFEETLWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRKKMIADGQADFLEMEVF  73
            GFEE LW++A++LRGS++++EYK+V L+L+FLK++SD FE +   +  D  AD  + +  
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDE-  66

Query  74   YQQDNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQNLE  133
            Y  +NIF +P EARW +I++NAK+ +I+  ID A+ +IE+ N +LKG LP +Y +R  L+
Sbjct  67   YLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEY-ARPALD  125

Query  134  TKKLASLIDTIDNIETLAHETDVETLSKEDLVGRVYEYFLGKFAATEGKGGGEFYTPKCV  193
              KL+ +ID       ++   +     K+D++GRVYEYF++KFA++EGK +GEFYTP  +
Sbjct  126  KEKLGDIIDL------FTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSI  179

Query  194  VTLLTEMLEPFQGKIYDPCCGSAGMFVQSVKFVESHQGKSRDIALYGQELTATTYKLAKM  253
            V LL EM+EP++G+IYDPCCGS+GMFVQS +FVE HQG+  DIA+YGQE  +TT KLAKM
Sbjct  180  VKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKM  239

Query  254  NLAIRGLSANLGERPADTFFSDQHPDLKADYILANPPFNLKDWRNEAELTKDPRFAGYRM  313
            NLAIRG+  +LGER ADTF +D H +LKADYILANPPFN  DW  +  L  D R   + +
Sbjct  240  NLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDW-GQERLLDDYRWQ-FGI  297

Query  314  PPTGNANYGWILHMLSKLSANGTAGFVLANGSMSSNTSGEGEIRAQMIENDLIDCMIALP  373
            PP GNANY+WI HM+SKL++NGTAGFVLANGSMS++  +E EIR ++IE+DL++C+++LP
Sbjct  298  PPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLP  357

Query  374  GQLFYTTQIPVCLWFMTKSKAADPAKGYRDRQGETLFIDARNLGTMISRTTKELTAEDIA  433
            GQLFY+TQIPVCLWF++++K+ +  K   +R+ E LFIDAR++G M+SRT KE++ EDI 
Sbjct  358  GQLFYSTQIPVCLWFISNNKGQNGKK---ERENEILFIDAREIGHMVSRTLKEFSDEDIQ  414

Query  434  TIADTYHAWRSTPEELAARIARGDSKLEKYEDQAGFCKVATLQDIKDNDYVLTPGRYVGA  493
             +A+TYHAWR+T +               YED AGFCKVA L+++K+N+Y+LTPGRYVG 
Sbjct  415  KVAQTYHAWRGTND-------------KPYEDIAGFCKVANLEEVKNNEYILTPGRYVGL  461

Query  494  AEQEEDGVAFETKMRELSKTLFEQMKQAEELDRAIRQNLEGLGYG  538
            A+ EED  +FE KM  ++  L EQ  ++ EL+  IR++LEGLGYG
Sbjct  462  ADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYG  506

106) ECNA114_4590 in NC_017644


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  487 bits (1836),  Expect = 6e-139, Method: Compositional matrix adjust.
 Identities = 279/525 (54%), Positives = 392/525 (75%), Gaps = 26/525 (4%)

Query  14   GFEETLWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRKKMIADGQADFLEMEVF  73
            GFEE LW++A++LRGS++++EYK+V L+L+FLK++SD FE +   +  D  AD  + +  
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDE-  66

Query  74   YQQDNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQNLE  133
            Y  +NIF +P EARW +I++NAK+ +I+  ID A+ +IE+ N +LKG LP +Y +R  L+
Sbjct  67   YLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEY-ARPALD  125

Query  134  TKKLASLIDTIDNIETLAHETDVETLSKEDLVGRVYEYFLGKFAATEGKGGGEFYTPKCV  193
              KL+ +ID       ++   +     K+D++GRVYEYF++KFA++EGK +GEFYTP  +
Sbjct  126  KEKLGDIIDL------FTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSI  179

Query  194  VTLLTEMLEPFQGKIYDPCCGSAGMFVQSVKFVESHQGKSRDIALYGQELTATTYKLAKM  253
            V LL EM+EP++G+IYDPCCGS+GMFVQS +FVE HQG+  DIA+YGQE  +TT KLAKM
Sbjct  180  VKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKM  239

Query  254  NLAIRGLSANLGERPANTFFSDQHPDLKADYILANPPFNLKDWRNEAELTEDPRFAGYRM  313
            NLAIRG+  +LGER A+TF +D H +LKADYILANPPFN  DW  +  L +D R   + +
Sbjct  240  NLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDW-GQERLLDDYRWQ-FGI  297

Query  314  PPTGNANYGWILHMLSKLSANGTAGFVLANGSMSSNTSGEGEIRAQMIENDLIDCMIALP  373
            PP GNANY+WI HM+SKL++NGTAGFVLANGSMS++  +E EIR ++IE+DL++C+++LP
Sbjct  298  PPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLP  357

Query  374  GQLFYTTQIPVCLWFMTKSKAADPAKGYRDRQGETLFIDARNLGTMISRTTKELTAEDIA  433
            GQLFY+TQIPVCLWF++++K+ +  K   +R+ E LFIDAR++G M+SRT KE++ EDI 
Sbjct  358  GQLFYSTQIPVCLWFISNNKGQNGKK---ERENEILFIDAREIGHMVSRTLKEFSDEDIQ  414

Query  434  TIADTYHAWRSTPEELAARIARGDSKLEKYEDQAGFCKVATLQDIKDNDYVLTPGRYVGA  493
             +A+TYHAWR+T +               YED AGFCKVA L+++K+N+Y+LTPGRYVG 
Sbjct  415  KVAQTYHAWRGTND-------------KPYEDIAGFCKVANLEEVKNNEYILTPGRYVGL  461

Query  494  AEQEEDGVAFETKMRELSKTLFEQMKQAEELDRAIRQNLEALGYG  538
            A+ EED  +FE KM  ++  L EQ  ++ EL+  IR++LE+LGYG
Sbjct  462  ADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYG  506

107) MmTuc01_2250 in NC_020389


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  487 bits (1836),  Expect = 7e-139, Method: Compositional matrix adjust.
 Identities = 270/461 (59%), Positives = 374/461 (82%), Gaps = 7/461 (1%)

Query  3    DFEKQLWKAADKLRKNIDAAEYKHIVLGLIFLRYISDAFEELYEKLQQGEGEYAGADPED  62
            +FE +LW+AADKLR ++DAAEYK++ LGLIFL+Y+SD+FEE YE L+Q+   YA  D ED
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDP--YA--DEED  63

Query  63   RDEYKAENVFFVPAISRWPYLQSEAKKPDIGKSVDNAMDAIEKENPLLRGVLPKVFARGN  122
            +DEY AEN+F VP  +RW Y++ +AKKP+IG+ +D+AM AIE+EN  L+GVLPK +AR  
Sbjct  64   QDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPA  123

Query  123  LDPTNLGGLIDLVSNVALGDAKSRSADVLGHVFEYFLGEFALAEGKKGGQFYTPRSVVEL  182
            LD  +LG++IDL +   +GD+ SR  DVLG+V+EYF++ FA AEGK++G+FYTP S+V L
Sbjct  124  LDKEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKL  182

Query  183  LVEMLEPYNGRVFDPCCGSGGMFVQSEKFVADHQGKINDISIYGQESNQTTWRLAKMNLA  242
            LVEM+EPY+GR++DPCCGSGGMFVQSE+FV  HQG+++DI+IYGQESN TTW+LAKMNLA
Sbjct  183  LVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLA  242

Query  243  IRSIDSSQVKWNNEGSFLNDVHKDLKADYVIANPPFNDSDWSGDLLRKDGRWKYGVPPAG  302
            IR+ID+    +N + +F ND+HK+LKADY++ANPPFN SDW+ + L  D RW++G+PP G
Sbjct  243  IRGIDNDLGERNAD-TFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKG  301

Query  303  NANYAWIQHFLYHLGPSGQAGFVLAKGSLTSKSSGEGDIRKELVEARLIDCIVNLPPKLF  362
            NANYAWI+H +  L+P+G AGFVLA+GS+++ + +E +IRK+L+E  L++CIV LP +LF
Sbjct  302  NANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLF  361

Query  363  LNTQIPASLWFLSRNKANGKHRNRTDEILFIDARNMGHLINRRTREFSPEDIQQIAGTYH  422
             +TQIP  LWF+S NK++   ++R +EILFIDAR++GH+++R  +EFS EDIQ++A TYH
Sbjct  362  YSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYH  421

Query  423  KWRNPEGN-YEDVKGFCNSAPIERVRELGYVLTPGRYVGLP  462
             WR  +++ YED+ GFC+ A +E V++  Y+LTPGRYVGL+
Sbjct  422  AWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLA  462

108) Metho_1314 in NC_019977


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  486 bits (1831),  Expect = 1e-138, Method: Compositional matrix adjust.
 Identities = 270/459 (59%), Positives = 371/459 (81%), Gaps = 7/459 (1%)

Query  5    EKQLWKTADKLRKNIDAAEYKHIVLGLIFLRYISDAFDELYEKLQQGEGEYAGADPEDRD  64
            E +LW++ADKLR ++DAAEYK++ LGLIFL+Y+SD+F+E YE L+Q+   YA  D ED+D
Sbjct  10   EEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDP--YA--DEEDQD  65

Query  65   EYKAENVFFVPAIARWSYLQAEAKKPEIGKAVDNAMDVIEKENPLLRGVLPKVYARGNLD  124
            EY AEN+F VP  ARW Y++ +AKKPEIG+ +D+AM  IE+EN  L+GVLPK YAR  LD
Sbjct  66   EYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALD  125

Query  125  PANLGGLIDLVSNIALGDAKNRSADVLGHVFEYFLGEFALAEGKKGGQFYTPRSVVELLV  184
              +LG++IDL + + +GD+ +R  DVLG+V+EYF++ FA AEGK++G+FYTP S+V LLV
Sbjct  126  KEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLV  184

Query  185  EMLEPYNGRVFDPCCGSGGMFVQSEKFVADHQGKLNDISIYGQESNQTTWRLAKMNLAIR  244
            EM+EPY+GR++DPCCGSGGMFVQSE+FV  HQG+L+DI+IYGQESN TTW+LAKMNLAIR
Sbjct  185  EMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIR  244

Query  245  SIDSSQVKWNNEGSFLNDVHKDLKADYVIANPPFNDSDWSGDLLHKDGRWKYGIPPAGNA  304
            +ID+    +N + +F ND+HK+LKADY++ANPPFN SDW+ + L  D RW++GIPP GNA
Sbjct  245  GIDNDLGERNAD-TFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNA  303

Query  305  NYAWIQHFLYHLGPSGQAGFVLAKGSLTSKSSGEGDIRKELVETRLVDCIVNLPPKLFLN  364
            NYAWI+H +  L+P+G AGFVLA+GS+++ + +E +IRK+L+E  LV+CIV LP +LF +
Sbjct  304  NYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYS  363

Query  365  TQIPASLWFLSRNKANGRYRNRTDEILFIDARNMGHLINRRTREFSPEDIQEIASTYHKW  424
            TQIP  LWF+S NK++   ++R +EILFIDAR++GH+++R  +EFS EDIQ +A TYH W
Sbjct  364  TQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAW  423

Query  425  RNPEGN-YEDVKGFCNSAPIARVRELDYVLTPGRYVGLP  462
            R  +++ YED+ GFC+ A +  V++ +Y+LTPGRYVGL+
Sbjct  424  RGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLA  462

109) Clocl_1695 in NC_016627


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  486 bits (1834),  Expect = 8e-139, Method: Compositional matrix adjust.
 Identities = 285/514 (56%), Positives = 403/514 (79%), Gaps = 20/514 (3%)

Query  16   IEQVLWAAADKLRKNMDAAEYKHVVLGLIFLKYISDSFYDLYYKLKEGKGEYEGADPDDP  75
            +E+ LW AADKLR +MDAAEYK+V LGLIFLKY+SDSF + Y  LK++   Y + + +D 
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQD--PYADEEDQD-  65

Query  76   YEYRAENVFYVPPQARWDYLQSRAKLPTNGKDIDEAMEAVEKDNPSLKGVLPKEYAKEKL  135
             EY AEN+F VP +ARW+Y++  AK P  G+ ID AM A+E++N SLKGVLPKEYA+  L
Sbjct  66   -EYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  136  DKQSLGGLIDLIGTIALGDSVSKSSDILGQVYEYFLGQFALAEGKKGGQFYTPRSVVQLL  195
            DK+ LG++IDL+ T+ +GD+ S+  D+LG+VYEYF+++FA AEGK++G+FYTP S+V+LL
Sbjct  125  DKEKLGDIIDLF-TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL  183

Query  196  VEMLEPYEGRVFDPCCGSGGMFVQSEKFVEAHRDHYNGKSREIDKLFERVVSIYGQESNQ  255
            VEM+EPY GR++DPCCGSGGMFVQSE+FVE H+++ ++            ++IYGQESN 
Sbjct  184  VEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDD------------IAIYGQESNP  231

Query  256  TTWRLCKMNLAIRGIDSTNVLWNSEGSFLNDAHPDLKADFVIANPPFNDSDWSGELLRND  315
            TTW+L KMNLAIRGID+    +N++ +F ND H +LKAD+++ANPPFN SDW+ E L +D
Sbjct  232  TTWKLAKMNLAIRGIDNDLGERNAD-TFHNDLHKGLKADYILANPPFNASDWGQERLLDD  290

Query  316  GRWKYGVPPVSNANYAWIQHFLYHLSPKGTAGFVMAKGSLSSKTNGEGEIRKNIIEAGLV  375
             RW++G+PP +NANYAWI+H +  L+P+GTAGFV+A+GS+S+  ++E EIRKN+IE +LV
Sbjct  291  YRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLV  350

Query  376  DCIVNLPAKLFLNTQIPACLWFLSREKETNPNHPRRNKILFIDARNMGTLINRRTRELTD  435
            +CIV LP++LF +TQIP CLWF+S +K  N +  R N ILFIDAR++G +++R  +E++D
Sbjct  351  ECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSD  410

Query  436  EDISKIADTYHNWK-KDDGSYEDIPGFCKSATLDEVRELDYVLTPGRYVGLPD-EEDDFN  493
            EDI K+A+TYH W+  +D +YEDI+GFCK A L+EV++ +Y+LTPGRYVGL+D EED+  
Sbjct  411  EDIQKVAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEP  470

Query  494  FEERVQKLTAELKTQMEESTKLDDRIKENLAKVG  527
            FE++++++T+EL  Q   S  L+D+I+ +L  +G
Sbjct  471  FEQKMERITSELSEQFAKSKELEDQIRKSLEGLG  504

110) hsdM in NC_017663


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  486 bits (1834),  Expect = 9e-139, Method: Compositional matrix adjust.
 Identities = 280/525 (54%), Positives = 391/525 (75%), Gaps = 26/525 (4%)

Query  14   GFEETLWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRKKMIADGQADFLEMEVF  73
            GFEE LW++A++LRGS++++EYK+V L+L+FLK++SD FE +   +  D  AD  + +  
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDE-  66

Query  74   YQQDNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQNLE  133
            Y  +NIF +P EARW +I++NAK+ +I+  ID A+ +IE+ N +LKG LP +Y +R  L+
Sbjct  67   YLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEY-ARPALD  125

Query  134  TKKLASLIDTIDNIETLAHETDVETLSKEDLVGRVYEYFLGKFAATEGKGGGEFYTPKCV  193
              KL+ +ID       ++   +     K+D++GRVYEYF++KFA++EGK +GEFYTP  +
Sbjct  126  KEKLGDIIDL------FTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSI  179

Query  194  VTLLTEMLEPFQGKIYDPCCGSAGMFVQSVKFVESHQGKSRDIALYGQELTATTYKLAKM  253
            V LL EM+EP++G+IYDPCCGS+GMFVQS +FVE HQG+  DIA+YGQE  +TT KLAKM
Sbjct  180  VKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKM  239

Query  254  NLAIRGLSANLGERPADTFFSDQHPDLKADYILANPPFNLKDWRNEAELTKDPRFAGYRM  313
            NLAIRG+  +LGER ADTF +D H +LKADYILANPPFN  DW  +  L  D R   + +
Sbjct  240  NLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDW-GQERLLDDYRWQ-FGI  297

Query  314  PPTGNANYGWILHMLSKLSANGTAGFVLANGSMSSNTSGEGEIRAQMIENDLIDCMIALP  373
            PP GNANY+WI HM+SKL++NGTAGFVLANGSMS++  +E EIR ++IE+DL++C+++LP
Sbjct  298  PPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLP  357

Query  374  GQLFYTTQIPVCLWFMTKSKAADPAKGYRDRQGETLFIDARNLGTMISRTTKELTTEDIA  433
            GQLFY+TQIPVCLWF++++K+ +  K   +R+ E LFIDAR++G M+SRT KE++ EDI 
Sbjct  358  GQLFYSTQIPVCLWFISNNKGQNGKK---ERENEILFIDAREIGHMVSRTLKEFSDEDIQ  414

Query  434  TIADTYHAWRSTPEELAARIARGDSKLEKYEDQAGFCKVATLQDIKDNDYVLTPGRYVGA  493
             +A+TYHAWR+T +               YED AGFCKVA L+++K+N+Y+LTPGRYVG 
Sbjct  415  KVAQTYHAWRGTND-------------KPYEDIAGFCKVANLEEVKNNEYILTPGRYVGL  461

Query  494  AEQEEDGVAFETKMRELSKTLFEQMKQAEELDRAIRQNLEALGYG  538
            A+ EED  +FE KM  ++  L EQ  ++ EL+  IR++LE+LGYG
Sbjct  462  ADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYG  506

111) Desgi_1008 in NC_021184


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  485 bits (1830),  Expect = 2e-138, Method: Compositional matrix adjust.
 Identities = 271/465 (59%), Positives = 376/465 (81%), Gaps = 7/465 (1%)

Query  14   IEKQLWKAADKLRKNIDAAEYKHIILGLIFLKYISNAFEELYQKLEKGEGEYAGADPEDK  73
            +E +LW+AADKLR ++DAAEYK++ LGLIFLKY+S++FEE Y+ L   ++ YA  D ED+
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELK--QDPYA--DEEDQ  64

Query  74   DEYKAENVFFVPEKARWSYLQSRAKLPEIGKDVDDAMDAIEKENPSLKDVLPKVYARGNL  133
            DEY AEN+F VP  ARW Y++  AK PEIG+ +D AM AIE+EN SLK+VLPK YAR  L
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  134  DPTNLGGLIDLVGNIALGEAKARSADILGHVFEYFLGEFALAEGKKGGQFYTPRSVVELL  193
            D  +LG++IDL   + +G++ +R  D+LG+V+EYF++ FA AEGK++G+FYTP S+V LL
Sbjct  125  DKEKLGDIIDLF-TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL  183

Query  194  VEMLEPYKGRVFDPCCGSGGMFVQSEKFVKDRQGRVNDISIFGQESNQTTWRLAKMNLAI  253
            VEM+EPYKGR++DPCCGSGGMFVQSE+FV  +QGR++DI+I+GQESN TTW+LAKMNLAI
Sbjct  184  VEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAI  243

Query  254  RGIDSSQVKWNSEGSFLNDSHKDLKADYVIANPPFNDSDWGGDLLRKDGRWKYGTPPTGN  313
            RGID+    +N++ +F ND HK+LKADY++ANPPFN SDWG + L  D RW++G PP GN
Sbjct  244  RGIDNDLGERNAD-TFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGN  302

Query  314  ANYAWIQHFIYHLSPSGQAGFVLAKGALTSKSSGEGDIRKELVEARLIDCIINLPAKLFL  373
            ANYAWI+H I  L+P+G AGFVLA+G++++ + +E +IRK+L+E  L++CI+ LP++LF 
Sbjct  303  ANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFY  362

Query  374  NTQIPASLWFLSRNKENGKFRNRRDEILFIDARNMGHLINRRTRELSKEDIQKIAETYHN  433
            +TQIP  LWF+S NK +   ++R +EILFIDAR++GH+++R  +E+S EDIQK+A+TYH 
Sbjct  363  STQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHA  422

Query  434  WRNPDGN-YEDIKGFCNSASIERVRELDYVLTPGRYVGLPEDEDD  477
            WR  +++ YEDI GFC+ A++E V++ +Y+LTPGRYVGL++ E+D
Sbjct  423  WRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEED  467

112) HMPREF0868_0489 in NC_013895


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  485 bits (1827),  Expect = 3e-138, Method: Compositional matrix adjust.
 Identities = 282/505 (56%), Positives = 383/505 (76%), Gaps = 12/505 (2%)

Query  7    ATLGFEKQIWDAACVLWGHIPASEYRNVIIGLIFLKYISTAFDKKYQQLIAEGDGFENDP  66
            AT+GFE ++W+AA  L+G + A+EY+NV +GLIFLKY+S +F+ KY++L  +  + E+D 
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ  64

Query  67   DAYLEDNVFFVPEDARWEKIAKAAHEPEIGKVIDEAMRAIEADNKKLKNVLPKNYASPDL  126
            D YL +N+F VP +ARW+ I   A  PEIG++ID AM AIE +N  LK VLPK+YA P L
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  127  DKKILGNVVDLFTNMDMSDTEGNR-DVLGRTYEYCIAQFAekegkgggeFYTPSSIVNTL  185
            DK  LG+++DLFT   ++DTE+ + DVLGR YEY IA+FA  EGK +GEFYTPSSIV+ L
Sbjct  125  DKEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL  183

Query  186  VAILKPYANCRVYDCCCGSGGMFVQSAKFIQAHSGNRGSISIYGQEANPDTWKMAIMNLT  245
            V ++ PY   R+YD CCGSGGMFVQS +F++ H G  + I+IYGQE+NP TWK+A MNL+
Sbjct  184  VEMIEPYKG-RIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLA  242

Query  246  IRGLDADLGAYHADTFTNDLHPTLKADFILANPPFNYNPWGQEDLKDDVRWKYGVPPASN  305
            IRG+D DLG  +ADTF NDLH  LKAD+ILANPPFN + WGQE L DD RW++G+PP +N
Sbjct  243  IRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGN  302

Query  306  ANYAWIQHMIHHLAPSGKIGLVLANGALSSQNGGEGEIRKKIIEDDLIEGIIAMPPQLFY  365
            ANYAWI+HMI  LAP+G  G+VLANG++S+   +E EIRK++IE+DL+E I+++P QLFY
Sbjct  303  ANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFY  362

Query  366  SVTIPATLWFITKGKKQKGKT------VFIDARKMGHMVDRKHRDFTEEDIQKLADTIEA  419
            S  IP  LWFI++ K Q+GK       +FIDAR +GHMV R  ++F++EDIQK+A+T +A
Sbjct  363  STQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHA  422

Query  420  FQNGT---LEDEKGFCSVATIQDIAKQDYVLTPGRYVGIEEQEDDGEPFDEKMTRLTSEL  476
             +       ED  GFC VA ++++ +++Y+LTPGRYVG+ + E+D EPF++KM R+TSEL
Sbjct  423  WRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSEL  482

Query  477  SDMFERSHELEDEIRKKLGAIGYEI  501
            S+ F +S ELED+IRK L ++GY +
Sbjct  483  SEQFAKSKELEDQIRKSLEGLGYGV  507

113) Calni_0575 in NC_014758


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  484 bits (1826),  Expect = 3e-138, Method: Compositional matrix adjust.
 Identities = 281/502 (56%), Positives = 394/502 (79%), Gaps = 13/502 (2%)

Query  10   SFEQSLWKAADKLRKNIDAAEYKHVVLGLIFLRYISDAFEDLYEKLKKGEGEYSGADPED  69
            +FE+ LW+AADKLR ++DAAEYK+V LGLIFL+Y+SD+FE+ YE LK  ++ Y  AD ED
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELK--QDPY--ADEED  63

Query  70   VDEYKAENVFFIPPEARWSYLKAHAKSPEIGKIIDRAMDLIEKENPSLKGVLPKVYARGN  129
             DEY AEN+F +P EARW Y++ +AK PEIG+IID+AM  IE+EN SLKGVLPK YAR  
Sbjct  64   QDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPA  123

Query  130  IDPISIGGLIDLFNNMAINEAKEKTSDILGHVFEYFLGQFALAEGKKGGQFYTPRSVVEL  189
            +D   +G++IDLF    + ++  +  D+LG+V+EYF+++FA AEGK++G+FYTP S+V L
Sbjct  124  LDKEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKL  182

Query  190  LVEMLEPYKGRVFDPCCGSGGMFVQSEKSVQEHQGKINDISIYGQESNQTTWRLCKMNLA  249
            LVEM+EPYKGR++DPCCGSGGMFVQSE+ V+ HQG+++DI+IYGQESN TTW+L KMNLA
Sbjct  183  LVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLA  242

Query  250  IRGIDSSQVKWNPEGSFLNDAHKDLKADFVIANPPFNDSDWSGELLRKDVRWKYGVPPEG  309
            IRGID+    +N++ +F ND HK+LKAD+++ANPPFN SDW+ E L  D RW++G+PP G
Sbjct  243  IRGIDNDLGERNAD-TFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKG  301

Query  310  NANYAWIQHFIFHLSPSGKAGFVLAKGSLTTKQNAEYEIRKNMIQDDIIDCIVNLPPKLF  369
            NANYAWI+H I  L+P+G AGFVLA+GS++T  + E EIRKN+I++D+++CIV LP +LF
Sbjct  302  NANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLF  361

Query  370  LNTQIPACLWFIRKNKT-----TKKGQILFIDARDMGQLINRRQRVLTEDDIRKIADTYH  424
             +TQIP CLWFI +NK       +  +ILFIDAR++G++++R  + ++++DI+K+A+TYH
Sbjct  362  YSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYH  421

Query  425  KWQ-KEDGSYEDIKGFCKSATIEEVANLDYVLTPGRYVGLPdeeedfdf-eerfNKLKAE  482
             W+  +D +YEDI GFCK A +EEV N +Y+LTPGRYVGL+D EED +  E++ +++ +E
Sbjct  422  AWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSE  481

Query  483  FLQQLKEEERLNRLIMENLEKI  504
            + +Q+     L+  I  +LE +
Sbjct  482  LSEQFAKSKELEDQIRKSLEGL  503

114) Nhal_0897 in NC_013960


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  484 bits (1824),  Expect = 5e-138, Method: Compositional matrix adjust.
 Identities = 300/505 (60%), Positives = 406/505 (81%), Gaps = 7/505 (1%)

Query  16   LQKSLWKSADRLRKNMDAAEYKHVVLGLIFLKYISDAFEELHAKLSEGLGEYAGADPEDA  75
            ++  LW++AD+LR +MDAAEYK+V LGLIFLKY+SD+FEE    L ++   YA  D ED 
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQD--PYA--DEEDQ  64

Query  76   DEYRAENVFFVPEGARWSYLQARAKLPGIGKDVDEAMEAIEKENPTLKGVLPKQYARQNL  135
            DEY AEN+F VP  ARW Y++  AK P IG+ +D AM AIE+EN +LKGVLPK+YAR  L
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  136  DKASlgalidllgkiglgdaTARSRDILGRVYEYFLgefaaaegkkggQFYTPAAIVKLL  195
            DK  LG +IDL+     +   +R +D+LGRVYEYF++ FA+AEGK++G+FYTP++IVKLL
Sbjct  125  DKEKLGDIIDLFTFKVGDT-ESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL  183

Query  196  VNMLEPYKGRVYDPCCGSGGMFVQSEKFVEVHQGRIDDISIYGQESNQTTYRLCRMNLAI  255
            V+M+EPYKGR+YDPCCGSGGMFVQSE+FVE HQGR+DDI+IYGQESN TT +L +MNLAI
Sbjct  184  VEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAI  243

Query  256  RGIDGSNVRWNGEGSFLNDAHKDMKAEYIIANPPFNDSDWSGELLRDDPRWQFGVPPVGN  315
            RGID     +N++ +F ND HK++KA+YI+ANPPFN SDW+ E L DD RWQFG+PP GN
Sbjct  244  RGIDNDLGERNAD-TFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGN  302

Query  316  ANFAWMQHMIYHLAPNGTlglvlangslssnsggEGEIRKAIIEAKLVDCIVALPDKLFY  375
            AN+AW++HMI  LAPNGT G+VLANGS+S+++ +E EIRK +IE  LV+CIV+LP++LFY
Sbjct  303  ANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFY  362

Query  376  NTGIPACLWFISHDRRNHNFRNREDEILFIDARNLGQMITRRNRDFSDEDIARIADTYHA  435
            +T IP CLWFIS+++ ++  ++RE+EILFIDAR++G+M++R  ++FSDEDI ++A+TYHA
Sbjct  363  STQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHA  422

Query  436  WR-NKDGGYEDVKGFCKAATLEDVRKHKHVLTPGRYVGIPDEEDDGVPFEEKMTKLTEEL  494
            WR  +D  YED+ GFCK A LE+V+++  +LTPGRYVG++D E+D  PFE+KM ++T EL
Sbjct  423  WRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSEL  482

Query  495  AAQMAQGQALDARIRENLAKVGFGV  519
            + Q A+++ L+ +IR +L  +G+GV
Sbjct  483  SEQFAKSKELEDQIRKSLEGLGYGV  507

115) TEQUI_0820 in NC_014914


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  484 bits (1824),  Expect = 5e-138, Method: Compositional matrix adjust.
 Identities = 279/506 (56%), Positives = 394/506 (78%), Gaps = 11/506 (2%)

Query  1    MATLGFEKQLWEAACKLWGSIPAADYRKVIIGLIFLKYVSTTFDKRFQQLLDEGEGFEND  60
            MAT+GFE +LW+AA KL+GS+ AA+Y++V +GLIFLKYVS +F+ ++++L ++  + E+D
Sbjct  4    MATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEED  63

Query  61   IDAYTSKNLFYIPEEARWNHISKASHTEKIGVVIDNAMRQIETQNKSLNGVLPKIYASPD  120
             D Y + N+F +P EARW+ I+  +    IG +ID+AM  IE +N SL+GVLPK YA P 
Sbjct  64   QDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPA  123

Query  121  IDKHVLSDVVDLFTNSINFESIEQNKDILGRTYEYCIANFASYEGRRGGEFYTPASIVKT  180
            +DK+ L+D++DLFT  +  ++  +++D+LGR YEY IA+FAS EG+ +GEFYTP+SIVK 
Sbjct  124  LDKEKLGDIIDLFTFKVG-DTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKL  182

Query  181  MVEILKPQSGMRIYDPCMGSGGMIVQSAKYIEQHAGKRFSISVYGQESNPDTWKMAKMNM  240
            +VE++ P  G RIYDPC GSGGM+VQS +++E+H G+   I++YGQESNP TWK+AKMN+
Sbjct  183  LVEMIEPYKG-RIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNL  241

Query  241  AIRGIDANLGQHHADTFKNDLHPQKKFDIIMANPPFNLSEWGQENLVEDIRWKYGVPPKS  300
            AIRGID +LG+++ADTF NDLH   K D I+ANPPFN S+WGQE L++D RW++G+PPK+
Sbjct  242  AIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKG  301

Query  301  NANYAWIQHMIHHLATNGKIGLVLANGALSSQSSGEGEIRRKIIEDDLIEGIVALPTQLF  360
            NANYAWI+HMI  LA NG  G+VLANG++S+ + +E EIR+++IE+DL+E IV+LP QLF
Sbjct  302  NANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLF  361

Query  361  YSVTIPVTLWFITKNKKQKGKT------LFIDARNIGYMVDRTHRDFTDEDIDLLAKTFE  414
            YS  IPV LWFI++NK Q+GK       LFIDAR+IG MV RT ++F+DEDI+ +A+T++
Sbjct  362  YSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYH  421

Query  415  DFQNGK---LEEKQGFSAIANLEDIAKQDFILTPGRYVGIEELEDDGVPFEEKMTRLTSE  471
              +  +    E+  GF  +ANLE++ ++++ILTPGRYVG+ ++E+D  PFE+KM R+TSE
Sbjct  422  AWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSE  481

Query  472  LSEMFEKSHELEEEIRKKLGAIGYEV  497
            LSE F KS ELE++IRK L ++GY V
Sbjct  482  LSEQFAKSKELEDQIRKSLEGLGYGV  507

116) Tbis_2509 in NC_014165


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  484 bits (1824),  Expect = 6e-138, Method: Compositional matrix adjust.
 Identities = 286/527 (55%), Positives = 391/527 (75%), Gaps = 32/527 (6%)

Query  17   MPTMADLRDTLWKAADKLRGSMDAAQYKDFVLGLVFLKYVSDAFeerreaireeileQGI  76
            M+T++ + + LW+AADKLRGSMDAA+YK+  LGL+FLKYVSD+FE            +  
Sbjct  4    MATIG-FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFE------------EKY  50

Query  77   PESRLDMFLD--DKDEYIGHGVFWVPEEARWSHLAAHAKSEGIGELIDRAMDAIMKSNQS  134
             E + D + D  D+DEY+++ +FWVP EARW  +  +AK   IG++ID+AM AI + N+S
Sbjct  51   EELKQDPYADEEDQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENES  110

Query  135  LAGVLPKIFNRDNVDQRRLGELVDLIGDARF-TGHGDRPARDVLGEVYEYFLEKFARAEG  193
            L GVLPK + R  +D+ +LG+++DL+    F  G+ +   +DVLG VYEYF+ KFA AEG
Sbjct  111  LKGVLPKEYARPALDKEKLGDIIDLFT---FKVGDTESRKQDVLGRVYEYFIAKFASAEG  167

Query  194  KRGGEFYTPASVVKLLVEVLEPYAGRVYDPCCGSGGMFVQAEKFVIAHRGIQHKDDIAVY  253
            K +GEFYTP+S+VKLLVE++EPY GR+YDPCCGSGGMFVQ+E+FV  H+G  + DDIA+Y
Sbjct  168  KNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQG--RLDDIAIY  225

Query  254  GQESNERTWRLAKMNLAIHGISGNLGPRWADTFREDKHPDLKADFVLANPPFNMSDWS--  311
            GQESN  TW+LAKMNLAI+GI  +LG R ADTF++D H +LKAD++LANPPFN SDW+  
Sbjct  226  GQESNPTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQE  285

Query  312  RQVDDPRWRFGTPPANNANFAWLQHIISKLAERGTAGVVLANGSMSSKQSGEGEIRAAIV  371
            R +DD RW+FG PP  NAN+AW++H+ISKLA  GTAG VLANGSMS+   +E EIR  ++
Sbjct  286  RLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLI  345

Query  372  EADLVSCMVALPPQLFRTTQIPACLWFFDKDKSPQGAKRLADRRGEVLFIDARNMGTMVD  431
            E DLV C+V+LP QLF +TQIP CLWF+ ++K+ +G K   +R  E+LFIDAR++G MV 
Sbjct  346  EQDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKK---ERENEILFIDAREIGHMVS  402

Query  432  RTERVLTADDIARIADTYHAWRGTASARAKNLKYEDVPGFCYSATLEEIRQHDHVLTPGR  491
            RT + ++ +DI ++A+TYHAWRGT         YED++GFC  A LEE+++++ +LTPGR
Sbjct  403  RTLKEFSDEDIQKVAQTYHAWRGTNDKP-----YEDIAGFCKVANLEEVKNNEYILTPGR  457

Query  492  YVGAPEVQNEDDEPIADKIARLTKELYAHFEESARLEKVVREQLEGI  538
            YVG ++V+ ED+EP+ +K+ R+T EL  +F  S  LE  +R  LEG+
Sbjct  458  YVGLADVE-EDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

117) Anacy_6051 in NC_019773


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  483 bits (1820),  Expect = 1e-137, Method: Compositional matrix adjust.
 Identities = 279/509 (55%), Positives = 397/509 (78%), Gaps = 10/509 (1%)

Query  62   SFEQKLWKTADKLRKNIDAAEYKHIVLGLIFLKYISDAFEELHQKLLAGEGEYEGANPED  121
            +FE+KLW++ADKLR ++DAAEYK++ LGLIFLKY+SD+FEE  + L   ++ Y  A+ ED
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL--KQDPY--ADEED  63

Query  122  SEEYAAENVFFVPVAARWPSLQAQAKQPTIGKLVDEAMEAIEQENLKRLKGILPKVYGQQ  181
             +EY AEN+F VP  ARW  ++ +AK+P IG+++D AM AIE+EN   LKG+LPK Y++ 
Sbjct  64   QDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENEN-ESLKGVLPKEYARP  122

Query  182  KLDQKSLGGLIDLIGSITLGDAEAQAQDVLGRVYEYFLGQFALAEGKKGGQFYTPESIVR  241
             LD+  LG++IDL+ ++ +GD+E++ QDVLGRVYEYF+++FA AEGK++G+FYTP SIV+
Sbjct  123  ALDKEKLGDIIDLF-TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVK  181

Query  242  LLVEILEPYNGRVFDPCCGSGGMFVQSEKFIKNHQGRLDDISIYGQESNETTYKLCRMNL  301
            LLVE++EPY+GR++DPCCGSGGMFVQSE+F+ +HQGRLDDI+IYGQESN TT KL +MNL
Sbjct  182  LLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNL  241

Query  302  AIRGIDGSNIKWNPEGSFLNDAHKDLKADFVIANPPFNDSDWGGELLRNDGRWLDKDLVP  361
            AIRGID     +N++ +F ND HK+LKAD+++ANPPFN SDWG E L +D RW  +  +P
Sbjct  242  AIRGIDNDLGERNAD-TFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRW--QFGIP  298

Query  362  PVGNANFAWVSHFIYHLAPTGSAGFVlsngslssntsgEGDIRKALVQKDLVDCIVMLPT  421
            P GNAN+AW+ H I  LAP G+AGFVL+NGS+S++  +E +IRK L+++DLV+CIV LP 
Sbjct  299  PKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPG  358

Query  422  QLFYNTGIPACLWFLSRYKNGNKHRARHGEVLFIDASELGYMVNRSSRAFTEAEISKIAD  481
            QLFY+T IP CLWF+S  K  N  + R+ E+LFIDA E+G MV+R+ + F++ +I K+A+
Sbjct  359  QLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQ  418

Query  482  TYHEWKKSGG-SYRDIKGFCKSANLAAIEKHNFVLTPGRYVGIPDEVEDGVSFEEKMGAL  540
            TYH W+ + + +Y DI GFCK ANL  + +++++LTPGRYVG++D  ED  +FE+KM  +
Sbjct  419  TYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERI  478

Query  541  TADLAAQMNEGLALDAEIKIQLAKVGFSL  569
            T++L+ Q   +  L+ +I+  L  +G+++
Sbjct  479  TSELSEQFAKSKELEDQIRKSLEGLGYGV  507

118) SEEB0189_19740 in NC_021844


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  483 bits (1820),  Expect = 1e-137, Method: Compositional matrix adjust.
 Identities = 272/525 (52%), Positives = 390/525 (75%), Gaps = 26/525 (4%)

Query  14   GFEDTLWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRQKMKDEGQGDFLEMEVF  73
            GFE+ LW++A++LRGS++++EYK+V L+L+FLK++SD FE + + +K++  +D  + +  
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDE-  66

Query  74   YQQDNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQNLE  133
            Y  +NIF +P EARW +I++NAK+ +I+  ID A+ +IE+ N +LKG LP +Y +R  L+
Sbjct  67   YLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEY-ARPALD  125

Query  134  TKKLASLIDTIDNIETLAHETDVEALSKEDLVGRVYEYFLGKFAATEGKGGGEFYTPKCV  193
              KL+ +ID       ++   +     K+D++GRVYEYF++KFA++EGK +GEFYTP  +
Sbjct  126  KEKLGDIIDL------FTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSI  179

Query  194  VTLLTEMLEPFQGKIYDPCCGSAGMFVQSVKFVESHQGKSRDIALYGQELTATTYKLAKM  253
            V LL EM+EP++G+IYDPCCGS+GMFVQS +FVE HQG+  DIA+YGQE  +TT KLAKM
Sbjct  180  VKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKM  239

Query  254  NLAIRGLSANLGERPADTFFSDQHPDLKADYILANPPFNLKDWRNDAELTKDLRFAGYRT  313
            NLAIRG+  +LGER ADTF +D H +LKADYILANPPFN  DW  +  L  D R   +  
Sbjct  240  NLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDW-GQERLLDDYRWQ-FGI  297

Query  314  PPTGNANYGWILHMLSKLSANGTAGFVLANGSMSSNTSGEGEIRAQMIENDLIDCMIALP  373
            PP GNANY+WI HM+SKL++NGTAGFVLANGSMS++  +E EIR ++IE+DL++C+++LP
Sbjct  298  PPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLP  357

Query  374  GQLFFTTQIPVCLWFMTKSKAADPAKGYRNRQGETLFIDARNLGTMMNRTTKELTADDIA  433
            GQLF++TQIPVCLWF++++K+ +  K   +R+ E LFIDAR++G M++RT KE++ +DI 
Sbjct  358  GQLFYSTQIPVCLWFISNNKGQNGKK---ERENEILFIDAREIGHMVSRTLKEFSDEDIQ  414

Query  434  TIADTYHAWRSTPEELAARVKRGDSKLAQYEDQAGFCKVATIAEMKANDYVLTPGRYVGA  493
             +A+TYHAWR+T +               YED AGFCKVA + E+K N+Y+LTPGRYVG 
Sbjct  415  KVAQTYHAWRGTNDK-------------PYEDIAGFCKVANLEEVKNNEYILTPGRYVGL  461

Query  494  AEQEDDGVAFETKMRELSQTLFAQMKQAEELNKAIRQNLEAFGYG  538
            A+ E+D  +FE KM  ++  L  Q  ++ EL+  IR++LE++GYG
Sbjct  462  ADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYG  506

119) NIS_1707 in NC_009662


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  483 bits (1822),  Expect = 7e-138, Method: Compositional matrix adjust.
 Identities = 270/461 (59%), Positives = 372/461 (81%), Gaps = 12/461 (2%)

Query  10   SFEQSLWKAADKLRKNIDAAEYKHVVLGLIFLRYISEAFEDLYEKLKRGEGEYAGADPED  69
            +FE+ LW+AADKLR ++DAAEYK+V LGLIFL+Y+S++FE+ YE LK  ++ YA  D ED
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELK--QDPYA--DEED  63

Query  70   IDEYRAENVFFIPPEARWSHLKEKAKDPEIGKIIDNAMELIEKKNPSLKGVLPKVYARGN  129
             DEY AEN+F +P EARW  ++++AK PEIG+IID+AM  IE+ N SLKGVLPK YAR  
Sbjct  64   QDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPA  123

Query  130  IDPIALGGLIDLFSNIAINEAKEKTSDILGHVFEYFLGEFALAEGKKGGQFYTPRSVVEL  189
            +D   LG++IDLF+ + + ++  +  D+LG+V+EYF++ FA AEGK++G+FYTP S+V L
Sbjct  124  LDKEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKL  182

Query  190  LVEMLEPYRGRVFDPCCGSGGMFVQSEKFVQEHQGKINDISIYGQESNQTTWRLCKMNLA  249
            LVEM+EPY+GR++DPCCGSGGMFVQSE+FV+ HQG+++DI+IYGQESN TTW+L KMNLA
Sbjct  183  LVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLA  242

Query  250  IRGIDSSQVRWNPEGSFLNDAHKDLKSDFVIANPPFNDSDWSGELLREDARWKYGVPPAG  309
            IRGID+    +N++ +F ND HK+LK+D+++ANPPFN SDW+ E L +D RW++G+PP G
Sbjct  243  IRGIDNDLGERNAD-TFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKG  301

Query  310  NANYAWIQHFIFHLAPHGKAGFVLAKGALTTKQKDEYEIRKNMIEDDIVDCIVNLPAKLF  369
            NANYAWI+H I  LAP+G AGFVLA+G+++T  KDE EIRKN+IE+D+V+CIV LP++LF
Sbjct  302  NANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLF  361

Query  370  LNTQIPASLWFLRKNKT-----TRKGQILFIDARDMGKLINRRQRILTPEDIKKIADTYH  424
             +TQIP  LWF+ +NK       R  +ILFIDAR++G +++R  + ++ EDI+K+A+TYH
Sbjct  362  YSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYH  421

Query  425  TWQ-KEDSSYEDIKGFCKSVSVDEVKGLDYVLTPGRYVGLA  464
            +W+  +D +YEDI GFCK  +++EVK  +Y+LTPGRYVGLA
Sbjct  422  AWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLA  462

120) Ppro_1858 in NC_008609


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  483 bits (1821),  Expect = 9e-138, Method: Compositional matrix adjust.
 Identities = 277/536 (52%), Positives = 384/536 (72%), Gaps = 47/536 (8%)

Query  8    TLWATADKLRANMDAAEYKHIVLGLIFVKYISDTFQTRSSELRERFGNPDDEYYIQDADD  67
             LW +ADKLR++MDAAEYK++ LGLIF+KY+SD+F+ +  EL++   +P    Y ++ D+
Sbjct  12   KLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQ---DP----YADEEDQ  64

Query  68   ETLVCELEDRDYYREVNTFWVPEAARWENIRAQAKQPDIGKRIDDALTLIEAENPKLKGI  127
            +           Y   N FWVP  ARW+ I  +AK+P+IG+ ID A+  IE EN  LKG+
Sbjct  65   DE----------YLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGV  114

Query  128  LDKRYARVQLPDGKLGELVDMVSTIGFGVTGESARDILGQVYEYFLGQFASAEGKRGGQF  187
            L K YAR  L   KLG+++D+  T+  G T    +D+LG+VYEYF+++FASAEGK +G+F
Sbjct  115  LPKEYARPALDKEKLGDIIDLF-TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEF  173

Query  188  YTPASIVRTLVAILAPHHGQVYDPCCGSGGMFVQSEKFIEAHGGRIGDVSIYGQESNPTT  247
            YTP+SIV+ LV ++ P  G++YDPCCGSGGMFVQSE+F+E H GR++D++IYGQESNPTT
Sbjct  174  YTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTT  233

Query  248  WRLAAMNLAIRGIDFNLGKEPADTFVRNQHPDLRADFVLANPPFNVSDWWHPSLEGDPRW  307
            W+LA MNLAIRGID +LG   ADTF  + H +L+AD++LANPPFN SDW +  L +D RW
Sbjct  234  WKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRW  293

Query  308  EYGTPPQGNANYAWLQHMLYHLKPTGRAGIVLANGSMSSSQNSEGEIRRALVEADKVEVM  367
            ++G PP+GNANYAW++HM+  L P G AG+VLANGSMS+S + E EIR+ L+E D VE +
Sbjct  294  QFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECI  353

Query  368  VAMPGQLFFNTQIPACLWFLAKQKSV-----RQGEVLFIDARKLGTMISRVQIEFSDEDI  422
            V++PGQLF++TQIP CLWF++++K+      R+ E+LFIDAR +G M+SR   EFSDEDI
Sbjct  354  VTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDI  413

Query  423  QRIADTVHAWRGDGEIPLNPPLPKGEAETIPPFTKGGPGGIYQDIPGFCRSVSLAEIAEH  482
            Q++A+T HAWRG  + P                        Y+DI+GFC+  +L E+ ++
Sbjct  414  QKVAQTYHAWRGTNDKP------------------------YEDIAGFCKVANLEEVKNN  449

Query  483  GHVLTPGRYVGAEAVEDDDEAFTEKMQRLTETLGEQMARGAELDELIRRKLGGLGY  538
              +LTPGRYVG   VE+D+E+F +KM+R+T  L+EQ A++ EL++ IR+ L GLGY
Sbjct  450  EYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGY  505

121) TREAZ_2435 in NC_015577


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  482 bits (1818),  Expect = 2e-137, Method: Compositional matrix adjust.
 Identities = 278/498 (56%), Positives = 382/498 (77%), Gaps = 11/498 (2%)

Query  18   IEKQLWKAADKLRKNIDAAEYKHIVLGLIFLKYISDAFEELHEKLTSGKGEYKGADPEDR  77
            +E +LW+AADKLR ++DAAEYK++ LGLIFLKY+SD+FEE  E L   ++ Y  AD ED+
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELK--QDPY--ADEEDQ  64

Query  78   DEYLAENIFFVPENARWTRIRSRAKQVSIGKDIDAAMDAIEKDNPSLKDVLPKVYARGNL  137
            DEYLAENIF VP +ARW  I   AK+  IG+ ID AM AIE++N SLK+VLPK YAR  L
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  138  DPVNLGALVDLVSNTALGTAEARSADLLGHVFEYFLGEFALAEGKKGGQFYTPRSVVELL  197
            D  +LG ++DL +   +G +E+R  D+LG+V+EYF++ FA AEGK++G+FYTP S+V LL
Sbjct  125  DKEKLGDIIDLFTFK-VGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL  183

Query  198  VSMLEPYKGRVFDPCCGSGGMFVQSEKFVANHRGRLKDISIYGQESNHTTWRLAKMNLAI  257
            V M+EPYKGR++DPCCGSGGMFVQSE+FV +H+GRL DI+IYGQESN TTW+LAKMNLAI
Sbjct  184  VEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAI  243

Query  258  RGIESSQVSWNNEGSFLKDAHRDLKADFVIANPPFNDSDWSGELLRTDARWQYGTPPAGN  317
            RGI++    +N + +F +D H++LKAD+++ANPPFN SDW+ E L  D RWQ+G PP GN
Sbjct  244  RGIDNDLGERNAD-TFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGN  302

Query  318  ANYAWIQHFLYHLAPKGTAGFVLAKGSLTSKSSGEGDIRKALIEAQLVDCIVNLPAKLFL  377
            ANYAWI+H +  LAP+GTAGFVLA+GS+++ + +E +IRK LIE +LV+CIV LP++LF 
Sbjct  303  ANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFY  362

Query  378  NTQIPACLWFLSRSKARGP---RSAEILFIDARSLGRLINRRTRELAPEDIAQIAETYHH  434
            +TQIP CLWF+S +K++     R  EILFIDAR +G++++R  +E++ EDI ++A+TYH 
Sbjct  363  STQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHA  422

Query  435  WRSANP-SYQDIKGFCSSALIDRVRDLDHVLTPGRYVGLPD-EEDDFDFATRFTSLKAEF  492
            WR++N  +Y+DI GFC  A ++ V++ + +LTPGRYVGL+D EED+  F  +   + +E+
Sbjct  423  WRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSEL  482

Query  493  EAQLKEEARLNKQILENL  510
              Q+     L+ QI  +L
Sbjct  483  SEQFAKSKELEDQIRKSL  500

122) CE2327 in NC_004369


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  482 bits (1817),  Expect = 2e-137, Method: Compositional matrix adjust.
 Identities = 269/522 (52%), Positives = 390/522 (75%), Gaps = 28/522 (5%)

Query  17   LKDTLWKAADKLRGSMDASQYKDVILGLVFLKYVSDAFAERRTQLHDELVAEGMTDDQTA  76
            + + LW+AADKLRGSMDA++YK+V LGL+FLKYVSD+F E+  +L ++  A+        
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADE-------  61

Query  77   MLIDDTDEYTGHGVFWVPDNARWEYLAQNAKGLSANYGNAPRNIGELVDDAMDAIMVANP  136
               +D DEY ++ +FWVP +ARW+Y+ +NAK           +IG+++D AM AI   N 
Sbjct  62   ---EDQDEYLAENIFWVPKEARWQYINDNAK---------KPEIGQIIDKAMIAIENENE  109

Query  137  ALSATLPRIYNRESVDQRRLGELIDLFNTARFTGQGPGRARDLLGEVYEYFLEKFARAEG  196
            +L + LP+ Y R ++D+ +LG++IDLF      G+  +R +D+LG VYEYF+ KFA AEG
Sbjct  110  SLKGVLPKEYARPALDKEKLGDIIDLFTFK--VGDTESRKQDVLGRVYEYFIAKFASAEG  167

Query  197  KRGGEFYTPAGVVRVLVEVLEPTSGRVYDPCCGSGGMFVQTEKFLDAHNKDRTAIAVYGQ  256
            K +GEFYTP+++V++LVE++EP  GR+YDPCCGSGGMFVQ+E+F++ H+     IA+YGQ
Sbjct  168  KNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQ  227

Query  257  ELNERTWRMAKMNLAIHGLNANLGPRWGDTFARDLHPEMQADYIMANPPFNIKDWARNE-  315
            E N  TW++AKMNLAI+G++ +LG R +DTF  DLH  ++ADYI+ANPPFN  DW+++  
Sbjct  228  ESNPTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERL  287

Query  316  -EDPRWRYGVPPKNNANYAWIQHIISKLAPGGSAGVVMAngsmssnsggegKIRAELVEA  374
             +D RW++G+PPK NANYAWI+H+ISKLAP G+AG V+ANGSMS+++ +E  IR +L+E 
Sbjct  288  LDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQ  347

Query  375  DLVSCMVALPTQLFRSTGIPVCVWFFAKDKTVGDQGAIDRTGQVLFIDARNLGHMIDRAE  434
            DLV C+V+LP QLF ST IPVC+WF++++K  G++G  +R  ++LFIDAR++GHM+ R+ 
Sbjct  348  DLVECIVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMVSRTL  405

Query  435  RALSDEDIAKIADTFHTWRGTPSAKGRTYEDEAGFCYSATLEEIKDADYALTPGRYVGAA  494
            + +SDEDI K+A+T+H+WRGT   +++ YED AGFC  A LEE+K+ +Y LTPGRYVG A
Sbjct  406  KEFSDEDIQKVAQTYHAWRGT---NDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLA  462

Query  495  EIEDDGEPIDEKIERLKKELLDQFDESERLAAVVREQLRGVS  536
            ++E+D EP+++K+ER+  EL +QF  S  L   +R  L G++
Sbjct  463  DVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLG  504

123) Kvar_4504 in NC_013850


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  482 bits (1818),  Expect = 2e-137, Method: Compositional matrix adjust.
 Identities = 273/525 (52%), Positives = 391/525 (75%), Gaps = 26/525 (4%)

Query  14   GFEDTLWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRQKMKDEGQGDFLEMEVF  73
            GFE+ LW++A++LRGS++++EYK+V L+L+FLK++SD FE + + +K++  +D  + +  
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDE-  66

Query  74   YQQDNIFYLPEEARWSFIKQHAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQNLE  133
            Y  +NIF +P EARW +I+++AK+ +I+  ID A+ +IE+ N +LKG LP +Y +R  L+
Sbjct  67   YLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEY-ARPALD  125

Query  134  TKKLASLIDTIDNIETLAHETDVEALSKEDLVGRVYEYFLGKFAATEGKGGGEFYTPKCV  193
              KL+ +ID       ++   +     K+D++GRVYEYF++KFA++EGK +GEFYTP  +
Sbjct  126  KEKLGDIIDL------FTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSI  179

Query  194  VTLLTEMLEPFQGKIYDPCCGSAGMFVQSVKFVESHQGKSRDIALYGQELTATTYKLAKM  253
            V LL EM+EP++G+IYDPCCGS+GMFVQS +FVE HQG+  DIA+YGQE  +TT KLAKM
Sbjct  180  VKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKM  239

Query  254  NLAIRGLSANLGERPADTFFSDQHPDLKADYILANPPFNLKDWRNDAELTKDPRFAGYRT  313
            NLAIRG+  +LGER ADTF +D H +LKADYILANPPFN  DW  +  L  D R   +  
Sbjct  240  NLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDW-GQERLLDDYRWQ-FGI  297

Query  314  PPTGNANYGWILHMLSKLSANGTAGFVLANGSMSSNTSGEGEIRAQMIENDLIDCMIALP  373
            PP GNANY+WI HM+SKL++NGTAGFVLANGSMS++  +E EIR ++IE+DL++C+++LP
Sbjct  298  PPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLP  357

Query  374  GQLFFTTQIPVCLWFMTKSKAADPAKGYRDRQGETLFIDARNLGTMINRTTKELTADDIA  433
            GQLF++TQIPVCLWF++++K+ +  K   +R+ E LFIDAR++G M++RT KE++ +DI 
Sbjct  358  GQLFYSTQIPVCLWFISNNKGQNGKK---ERENEILFIDAREIGHMVSRTLKEFSDEDIQ  414

Query  434  TIADTYHAWRSTPEELAERVKRGDSKLAQYEDQAGFCKVATIEEIKANENVLTPGRYVGA  493
             +A+TYHAWR+T +               YED AGFCKVA +EE+K NE +LTPGRYVG 
Sbjct  415  KVAQTYHAWRGTNDK-------------PYEDIAGFCKVANLEEVKNNEYILTPGRYVGL  461

Query  494  AEQEDDGVAFEIKMRELSQTLFAQMKQAQELDNAIRQNLEVLGYG  538
            A+ E+D  +FE KM  ++  L  Q  +++EL++ IR++LE LGYG
Sbjct  462  ADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYG  506

124) SeD_A4931 in NC_011205


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  482 bits (1817),  Expect = 2e-137, Method: Compositional matrix adjust.
 Identities = 273/532 (52%), Positives = 391/532 (74%), Gaps = 38/532 (7%)

Query  14   GFEDTLWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRKQM------EDEGQGDF  67
            GFE+ LW++A++LRGS++++EYK+V L+L+FLK++SD FE +  ++      ++E+Q+++
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDEY  67

Query  68   LEMEVFYQQDNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPSLKGALPDNYF  127
            L        +NIF +P EARW +I++NAK+ +I+  ID A+ +IE+ N SLKG LP +Y 
Sbjct  68   LA-------ENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEY-  119

Query  128  SRQNLETKKLASLIDTIDNIETLAHETDVEALSKEDLVGRVYEYFLGKFAATEGKGGGEF  187
            +R  L+  KL+ +ID       ++   +     K+D++GRVYEYF++KFA++EGK +GEF
Sbjct  120  ARPALDKEKLGDIIDL------FTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEF  173

Query  188  YTPKCVVTLLTEMLEPFQGKIYDPCCGSAGMFVQSVKFVESHQGKSRDIALYGQELTATT  247
            YTP  +V LL EM+EP++G+IYDPCCGS+GMFVQS +FVE HQG+  DIA+YGQE  +TT
Sbjct  174  YTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTT  233

Query  248  YKLAKMNLAIRGLSANLGERPADTFFSDQHPDLKADYILANPPFNLKDWRNDAELTKDPR  307
             KLAKMNLAIRG+  +LGER ADTF +D H +LKADYILANPPFN  DW  +  L  D R
Sbjct  234  WKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDW-GQERLLDDYR  292

Query  308  FAGYRTPPTGNANYGWILHMLSKLSANGTAGFVLANGSMSSNTSGEAEIRAQMIENDLID  367
               +  PP GNANY+WI HM+SKL++NGTAGFVLANGSMS++  +E EIR ++IE+DL++
Sbjct  293  WQ-FGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVE  351

Query  368  CMIALPGQLFFTTQIPVCLWFMTKSKAADPAKGYRNRQGETLFIDARNLGTMINRTTKEL  427
            C+++LPGQLF++TQIPVCLWF++++K+ +  K   +R+ E LFIDAR++G M++RT KE+
Sbjct  352  CIVTLPGQLFYSTQIPVCLWFISNNKGQNGKK---ERENEILFIDAREIGHMVSRTLKEF  408

Query  428  TADDIATIADTYHAWRSTPEELVERVKRGDSQLAQYEDQAGFCKVATIAEIKANDSVLTP  487
            + +DI  +A+TYHAWR+T +               YED AGFCKVA + E+K N+ +LTP
Sbjct  409  SDEDIQKVAQTYHAWRGTNDK-------------PYEDIAGFCKVANLEEVKNNEYILTP  455

Query  488  GRYVGAAEQEDDGVAFETKMRELSQTLFAQMKQAEELDNAIRQNLEVLGYGI  539
            GRYVG A+ E+D  +FE KM  ++  L  Q  ++ EL++ IR++LE LGYG+
Sbjct  456  GRYVGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

125) hsdM in NC_011294


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  482 bits (1817),  Expect = 2e-137, Method: Compositional matrix adjust.
 Identities = 273/532 (52%), Positives = 391/532 (74%), Gaps = 38/532 (7%)

Query  14   GFEDTLWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRKQM------EDEGQGDF  67
            GFE+ LW++A++LRGS++++EYK+V L+L+FLK++SD FE +  ++      ++E+Q+++
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDEY  67

Query  68   LEMEVFYQQDNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPSLKGALPDNYF  127
            L        +NIF +P EARW +I++NAK+ +I+  ID A+ +IE+ N SLKG LP +Y 
Sbjct  68   LA-------ENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEY-  119

Query  128  SRQNLETKKLASLIDTIDNIETLAHETDVEALSKEDLVGRVYEYFLGKFAATEGKGGGEF  187
            +R  L+  KL+ +ID       ++   +     K+D++GRVYEYF++KFA++EGK +GEF
Sbjct  120  ARPALDKEKLGDIIDL------FTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEF  173

Query  188  YTPKCVVTLLTEMLEPFQGKIYDPCCGSAGMFVQSVKFVESHQGKSRDIALYGQELTATT  247
            YTP  +V LL EM+EP++G+IYDPCCGS+GMFVQS +FVE HQG+  DIA+YGQE  +TT
Sbjct  174  YTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTT  233

Query  248  YKLAKMNLAIRGLSANLGERPADTFFSDQHPDLKADYILANPPFNLKDWRNDAELTKDPR  307
             KLAKMNLAIRG+  +LGER ADTF +D H +LKADYILANPPFN  DW  +  L  D R
Sbjct  234  WKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDW-GQERLLDDYR  292

Query  308  FAGYRTPPTGNANYGWILHMLSKLSANGTAGFVLANGSMSSNTSGEAEIRAQMIENDLID  367
               +  PP GNANY+WI HM+SKL++NGTAGFVLANGSMS++  +E EIR ++IE+DL++
Sbjct  293  WQ-FGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVE  351

Query  368  CMIALPGQLFFTTQIPVCLWFMTKSKAADPAKGYRNRQGETLFIDARNLGTMINRTTKEL  427
            C+++LPGQLF++TQIPVCLWF++++K+ +  K   +R+ E LFIDAR++G M++RT KE+
Sbjct  352  CIVTLPGQLFYSTQIPVCLWFISNNKGQNGKK---ERENEILFIDAREIGHMVSRTLKEF  408

Query  428  TADDIATIADTYHAWRSTPEELVERVKRGDSQLAQYEDQAGFCKVATIAEIKANDSVLTP  487
            + +DI  +A+TYHAWR+T +               YED AGFCKVA + E+K N+ +LTP
Sbjct  409  SDEDIQKVAQTYHAWRGTNDK-------------PYEDIAGFCKVANLEEVKNNEYILTP  455

Query  488  GRYVGAAEQEDDGVAFETKMRELSQTLFAQMKQAEELDNAIRQNLEVLGYGI  539
            GRYVG A+ E+D  +FE KM  ++  L  Q  ++ EL++ IR++LE LGYG+
Sbjct  456  GRYVGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

126) hsdM in NC_011274


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  482 bits (1817),  Expect = 2e-137, Method: Compositional matrix adjust.
 Identities = 273/532 (52%), Positives = 391/532 (74%), Gaps = 38/532 (7%)

Query  14   GFEDTLWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRKQM------EDEGQGDF  67
            GFE+ LW++A++LRGS++++EYK+V L+L+FLK++SD FE +  ++      ++E+Q+++
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDEY  67

Query  68   LEMEVFYQQDNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPSLKGALPDNYF  127
            L        +NIF +P EARW +I++NAK+ +I+  ID A+ +IE+ N SLKG LP +Y 
Sbjct  68   LA-------ENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEY-  119

Query  128  SRQNLETKKLASLIDTIDNIETLAHETDVEALSKEDLVGRVYEYFLGKFAATEGKGGGEF  187
            +R  L+  KL+ +ID       ++   +     K+D++GRVYEYF++KFA++EGK +GEF
Sbjct  120  ARPALDKEKLGDIIDL------FTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEF  173

Query  188  YTPKCVVTLLTEMLEPFQGKIYDPCCGSAGMFVQSVKFVESHQGKSRDIALYGQELTATT  247
            YTP  +V LL EM+EP++G+IYDPCCGS+GMFVQS +FVE HQG+  DIA+YGQE  +TT
Sbjct  174  YTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTT  233

Query  248  YKLAKMNLAIRGLSANLGERPADTFFSDQHPDLKADYILANPPFNLKDWRNDAELTKDPR  307
             KLAKMNLAIRG+  +LGER ADTF +D H +LKADYILANPPFN  DW  +  L  D R
Sbjct  234  WKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDW-GQERLLDDYR  292

Query  308  FAGYRTPPTGNANYGWILHMLSKLSANGTAGFVLANGSMSSNTSGEAEIRAQMIENDLID  367
               +  PP GNANY+WI HM+SKL++NGTAGFVLANGSMS++  +E EIR ++IE+DL++
Sbjct  293  WQ-FGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVE  351

Query  368  CMIALPGQLFFTTQIPVCLWFMTKSKAADPAKGYRNRQGETLFIDARNLGTMINRTTKEL  427
            C+++LPGQLF++TQIPVCLWF++++K+ +  K   +R+ E LFIDAR++G M++RT KE+
Sbjct  352  CIVTLPGQLFYSTQIPVCLWFISNNKGQNGKK---ERENEILFIDAREIGHMVSRTLKEF  408

Query  428  TADDIATIADTYHAWRSTPEELVERVKRGDSQLAQYEDQAGFCKVATIAEIKANDSVLTP  487
            + +DI  +A+TYHAWR+T +               YED AGFCKVA + E+K N+ +LTP
Sbjct  409  SDEDIQKVAQTYHAWRGTNDK-------------PYEDIAGFCKVANLEEVKNNEYILTP  455

Query  488  GRYVGAAEQEDDGVAFETKMRELSQTLFAQMKQAEELDNAIRQNLEVLGYGI  539
            GRYVG A+ E+D  +FE KM  ++  L  Q  ++ EL++ IR++LE LGYG+
Sbjct  456  GRYVGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

127) hsdM in NC_022221


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  482 bits (1817),  Expect = 2e-137, Method: Compositional matrix adjust.
 Identities = 273/532 (52%), Positives = 391/532 (74%), Gaps = 38/532 (7%)

Query  14   GFEDTLWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRKQM------EDEGQGDF  67
            GFE+ LW++A++LRGS++++EYK+V L+L+FLK++SD FE +  ++      ++E+Q+++
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDEY  67

Query  68   LEMEVFYQQDNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPSLKGALPDNYF  127
            L        +NIF +P EARW +I++NAK+ +I+  ID A+ +IE+ N SLKG LP +Y 
Sbjct  68   LA-------ENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEY-  119

Query  128  SRQNLETKKLASLIDTIDNIETLAHETDVEALSKEDLVGRVYEYFLGKFAATEGKGGGEF  187
            +R  L+  KL+ +ID       ++   +     K+D++GRVYEYF++KFA++EGK +GEF
Sbjct  120  ARPALDKEKLGDIIDL------FTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEF  173

Query  188  YTPKCVVTLLTEMLEPFQGKIYDPCCGSAGMFVQSVKFVESHQGKSRDIALYGQELTATT  247
            YTP  +V LL EM+EP++G+IYDPCCGS+GMFVQS +FVE HQG+  DIA+YGQE  +TT
Sbjct  174  YTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTT  233

Query  248  YKLAKMNLAIRGLSANLGERPADTFFSDQHPDLKADYILANPPFNLKDWRNDAELTKDPR  307
             KLAKMNLAIRG+  +LGER ADTF +D H +LKADYILANPPFN  DW  +  L  D R
Sbjct  234  WKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDW-GQERLLDDYR  292

Query  308  FAGYRTPPTGNANYGWILHMLSKLSANGTAGFVLANGSMSSNTSGEAEIRAQMIENDLID  367
               +  PP GNANY+WI HM+SKL++NGTAGFVLANGSMS++  +E EIR ++IE+DL++
Sbjct  293  WQ-FGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVE  351

Query  368  CMIALPGQLFFTTQIPVCLWFMTKSKAADPAKGYRNRQGETLFIDARNLGTMINRTTKEL  427
            C+++LPGQLF++TQIPVCLWF++++K+ +  K   +R+ E LFIDAR++G M++RT KE+
Sbjct  352  CIVTLPGQLFYSTQIPVCLWFISNNKGQNGKK---ERENEILFIDAREIGHMVSRTLKEF  408

Query  428  TADDIATIADTYHAWRSTPEELVERVKRGDSQLAQYEDQAGFCKVATIAEIKANDSVLTP  487
            + +DI  +A+TYHAWR+T +               YED AGFCKVA + E+K N+ +LTP
Sbjct  409  SDEDIQKVAQTYHAWRGTNDK-------------PYEDIAGFCKVANLEEVKNNEYILTP  455

Query  488  GRYVGAAEQEDDGVAFETKMRELSQTLFAQMKQAEELDNAIRQNLEVLGYGI  539
            GRYVG A+ E+D  +FE KM  ++  L  Q  ++ EL++ IR++LE LGYG+
Sbjct  456  GRYVGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

128) hsdM in NC_016831


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  482 bits (1817),  Expect = 2e-137, Method: Compositional matrix adjust.
 Identities = 273/532 (52%), Positives = 391/532 (74%), Gaps = 38/532 (7%)

Query  14   GFEDTLWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRKQM------EDEGQGDF  67
            GFE+ LW++A++LRGS++++EYK+V L+L+FLK++SD FE +  ++      ++E+Q+++
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDEY  67

Query  68   LEMEVFYQQDNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPSLKGALPDNYF  127
            L        +NIF +P EARW +I++NAK+ +I+  ID A+ +IE+ N SLKG LP +Y 
Sbjct  68   LA-------ENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEY-  119

Query  128  SRQNLETKKLASLIDTIDNIETLAHETDVEALSKEDLVGRVYEYFLGKFAATEGKGGGEF  187
            +R  L+  KL+ +ID       ++   +     K+D++GRVYEYF++KFA++EGK +GEF
Sbjct  120  ARPALDKEKLGDIIDL------FTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEF  173

Query  188  YTPKCVVTLLTEMLEPFQGKIYDPCCGSAGMFVQSVKFVESHQGKSRDIALYGQELTATT  247
            YTP  +V LL EM+EP++G+IYDPCCGS+GMFVQS +FVE HQG+  DIA+YGQE  +TT
Sbjct  174  YTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTT  233

Query  248  YKLAKMNLAIRGLSANLGERPADTFFSDQHPDLKADYILANPPFNLKDWRNDAELTKDPR  307
             KLAKMNLAIRG+  +LGER ADTF +D H +LKADYILANPPFN  DW  +  L  D R
Sbjct  234  WKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDW-GQERLLDDYR  292

Query  308  FAGYRTPPTGNANYGWILHMLSKLSANGTAGFVLANGSMSSNTSGEAEIRAQMIENDLID  367
               +  PP GNANY+WI HM+SKL++NGTAGFVLANGSMS++  +E EIR ++IE+DL++
Sbjct  293  WQ-FGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVE  351

Query  368  CMIALPGQLFFTTQIPVCLWFMTKSKAADPAKGYRNRQGETLFIDARNLGTMINRTTKEL  427
            C+++LPGQLF++TQIPVCLWF++++K+ +  K   +R+ E LFIDAR++G M++RT KE+
Sbjct  352  CIVTLPGQLFYSTQIPVCLWFISNNKGQNGKK---ERENEILFIDAREIGHMVSRTLKEF  408

Query  428  TADDIATIADTYHAWRSTPEELVERVKRGDSQLAQYEDQAGFCKVATIAEIKANDSVLTP  487
            + +DI  +A+TYHAWR+T +               YED AGFCKVA + E+K N+ +LTP
Sbjct  409  SDEDIQKVAQTYHAWRGTNDK-------------PYEDIAGFCKVANLEEVKNNEYILTP  455

Query  488  GRYVGAAEQEDDGVAFETKMRELSQTLFAQMKQAEELDNAIRQNLEVLGYGI  539
            GRYVG A+ E+D  +FE KM  ++  L  Q  ++ EL++ IR++LE LGYG+
Sbjct  456  GRYVGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

129) I137_21565 in NC_021984


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  482 bits (1817),  Expect = 2e-137, Method: Compositional matrix adjust.
 Identities = 273/532 (52%), Positives = 391/532 (74%), Gaps = 38/532 (7%)

Query  14   GFEDTLWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRKQM------EDEGQGDF  67
            GFE+ LW++A++LRGS++++EYK+V L+L+FLK++SD FE +  ++      ++E+Q+++
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDEY  67

Query  68   LEMEVFYQQDNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPSLKGALPDNYF  127
            L        +NIF +P EARW +I++NAK+ +I+  ID A+ +IE+ N SLKG LP +Y 
Sbjct  68   LA-------ENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEY-  119

Query  128  SRQNLETKKLASLIDTIDNIETLAHETDVEALSKEDLVGRVYEYFLGKFAATEGKGGGEF  187
            +R  L+  KL+ +ID       ++   +     K+D++GRVYEYF++KFA++EGK +GEF
Sbjct  120  ARPALDKEKLGDIIDL------FTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEF  173

Query  188  YTPKCVVTLLTEMLEPFQGKIYDPCCGSAGMFVQSVKFVESHQGKSRDIALYGQELTATT  247
            YTP  +V LL EM+EP++G+IYDPCCGS+GMFVQS +FVE HQG+  DIA+YGQE  +TT
Sbjct  174  YTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTT  233

Query  248  YKLAKMNLAIRGLSANLGERPADTFFSDQHPDLKADYILANPPFNLKDWRNDAELTKDPR  307
             KLAKMNLAIRG+  +LGER ADTF +D H +LKADYILANPPFN  DW  +  L  D R
Sbjct  234  WKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDW-GQERLLDDYR  292

Query  308  FAGYRTPPTGNANYGWILHMLSKLSANGTAGFVLANGSMSSNTSGEAEIRAQMIENDLID  367
               +  PP GNANY+WI HM+SKL++NGTAGFVLANGSMS++  +E EIR ++IE+DL++
Sbjct  293  WQ-FGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVE  351

Query  368  CMIALPGQLFFTTQIPVCLWFMTKSKAADPAKGYRNRQGETLFIDARNLGTMINRTTKEL  427
            C+++LPGQLF++TQIPVCLWF++++K+ +  K   +R+ E LFIDAR++G M++RT KE+
Sbjct  352  CIVTLPGQLFYSTQIPVCLWFISNNKGQNGKK---ERENEILFIDAREIGHMVSRTLKEF  408

Query  428  TADDIATIADTYHAWRSTPEELVERVKRGDSQLAQYEDQAGFCKVATIAEIKANDSVLTP  487
            + +DI  +A+TYHAWR+T +               YED AGFCKVA + E+K N+ +LTP
Sbjct  409  SDEDIQKVAQTYHAWRGTNDK-------------PYEDIAGFCKVANLEEVKNNEYILTP  455

Query  488  GRYVGAAEQEDDGVAFETKMRELSQTLFAQMKQAEELDNAIRQNLEVLGYGI  539
            GRYVG A+ E+D  +FE KM  ++  L  Q  ++ EL++ IR++LE LGYG+
Sbjct  456  GRYVGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

130) G432_08505 in NC_020561


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  481 bits (1815),  Expect = 3e-137, Method: Compositional matrix adjust.
 Identities = 294/521 (57%), Positives = 410/521 (79%), Gaps = 19/521 (3%)

Query  9    GNLGFEAELFKAADKLRGNMEPSDYKHVALGLIFLKYISDAFearhaellaedaaaaedk  68
            + +GFE  L +AADKLRG+M++++YK+VALGLIFLKY+SD+FE +  EL  +  A  ED+
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ  64

Query  69   deylQDNIFWVPKEARWSHLQANAKQSSIGTLIDDAMRTIEKDNESLKGVLPKDYARPAL  128
            DEYL +NIFWVPKEARW  ++ NAK++ IG +ID AM +IE++NESLKGVLPK+YARPAL
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  129  NKVMLGELIDLISGIALHDGSDKSRDVLGRVYEYFLGQFAGAEGKRGGEFYTPRSVVRTL  188
            +K  LG++IDL++ + + D   + +DVLGRVYEYF+++FA+AEGK +GEFYTP S+V+ L
Sbjct  125  DKEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL  183

Query  189  VEMLEPYSGRVYDPCCGSGGMFVQSERFVTEHGGRIGDIAIYGQESNYTTWRLCKMNLAV  248
            VEM+EPY GR+YDPCCGSGGMFVQSERFV  H GR++DIAIYGQESN TTW+L KMNLA+
Sbjct  184  VEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAI  243

Query  249  RGIDSKIFWNNEGSFHKDEFATQRGNDGAPMKADFILANPPFNISDWGGERLREDVRWKF  308
            RGID+ +   N ++FH+D    ++G     +KAD+ILANPPFN SDWG ERL +D RW+F
Sbjct  244  RGIDNDLGERNADTFHND---LHKG-----LKADYILANPPFNASDWGQERLLDDYRWQF  295

Query  309  GVPPVGNANYAWLQHIFHHLAPHGVAGVVLANgsmssqqsgegeIRKAMLEAADGAGVVD  368
            G+PP GNANYAW++H++  LAP+G AG VLANGSMS+   +E EIRK ++E     ++V+
Sbjct  296  GIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIE----QDLVE  351

Query  369  CMVAMPGQLFYSTQIPACLWILAKGRSNGLVKKTKLRDRRGEVLFIDARKMGVLVDRTRR  428
            C+V++PGQLFYSTQIP CLW++++ +++        ++R  E+LFIDAR +G +V RT +
Sbjct  352  CIVTLPGQLFYSTQIPVCLWFISNNKGQ-----NGKKERENEILFIDAREIGHMVSRTLK  406

Query  429  ELTNSEIRKIADTYHAWRGEAEAGEYSDIPGFCKSATLDEIRKHGHVLTPGRYIGVeaqd  488
            E+++ +I+K+A+TYHAWRG  +   Y DI+GFCK A L+E++++  +LTPGRY+G+   +
Sbjct  407  EFSDEDIQKVAQTYHAWRGTNDKP-YEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVE  465

Query  489  eddeafedKMQRLTAQLGEQTKRGAELDAVIREKLGVIGYG  529
            ED+E+FE+KM+R+T++L+EQ  ++ EL+  IR  L  +GYG
Sbjct  466  EDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYG  506

131) O159_11410 in NC_022438


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  480 bits (1810),  Expect = 7e-137, Method: Compositional matrix adjust.
 Identities = 265/528 (51%), Positives = 384/528 (73%), Gaps = 28/528 (5%)

Query  10   TTKSLEATLWDAADELRGKMDSAQYKHVVLGLIFLKYVSDTFTVRHDELAR--LVDDPDS  67
            +T ++E  LW+AAD LRG MD+A+YK+V LGLIFLKYVSD+F  + +EL +    D+ D 
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ  64

Query  68   DYFMPTSQAKPSVLVDRYEYTAEGVFWIPECHRWEDLRAAGQQADIGSRVDKAMEAIERE  127
            D                 EY AE +FW+P   RW+ +   +++++IG  +DKAM AIE E
Sbjct  65   D-----------------EYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENE  107

Query  128  NPSLRGVLPKNYTQREVSAESIGGLINTFSRHDLAAAEYKDLDVLGRVYEYFLGKFVSNE  187
            N SL+GVLPK+Y++  +  E +G++I+ F+   ++ +E +  DVLGRVYEYF++KF S E
Sbjct  108  NESLKGVLPKEYARPALDKEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAE  166

Query  188  GKKAGEFYTPRSVVSLLVEMLQPFHGRVLDPACGSGGMFVQAEKFVTAHGGSRNDISVFG  247
            GK+AGEFYTP S+V LLVEM++P+ GR+ DP CGSGGMFVQ+E+FV  H G  +DI+++G
Sbjct  167  GKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYG  226

Query  248  QESNPTTWRLAKMNLAVRGIEGNLGREWADSFHADAHPDLRADFVIANPPFNDSKWGGER  307
            QESNPTTW+LAKMNLA+RGI+ +LG   AD+FH D H +L+AD+++ANPPFN S WG ER
Sbjct  227  QESNPTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQER  286

Query  308  LRTDPRWVYGAPPAQNANYAWLQNLLWHCAPTGTVGTVLANGSLSSQQNGEGAIRQAMVD  367
            L  D RW +G PP  NANYAW+++++   AP GT G VLANGS+S+  ++E  IR+ +++
Sbjct  287  LLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIE  346

Query  368  GDVVECIVALPPQLFYGTQIPVCLWYLTKNKDGSGLVGKTPRIRLRETLFIDARSVGFME  427
             D+VECIV+LP QLFY+TQIPVCLW++++NK+ +G      + R  E LFIDAR +G M 
Sbjct  347  QDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNG-----KKERENEILFIDAREIGHMV  401

Query  428  TRTVRAFSNEDVDRIADTYHAWRGTPTSAGQTYEDVPGFCRSVKTSEIAEHGYVLTPGRY  487
            +RT++ FS+ED++++A+TYHAWRGT    ++ YED++GFC+  +  E+ ++ Y+LTPGRY
Sbjct  402  SRTLKEFSDEDIQKVAQTYHAWRGT---NDKPYEDIAGFCKVANLEEVKNNEYILTPGRY  458

Query  488  VGAEAVEDDGEPLDEKISRLTMEIREGFTRRAEVQAAVLAALDSLEAG  535
            VG   VE+D EP+++K+ R+T E+ E F++  E++  +  +L++L  G
Sbjct  459  VGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYG  506

132) Bcav_3915 in NC_012669


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  480 bits (1809),  Expect = 9e-137, Method: Compositional matrix adjust.
 Identities = 265/519 (52%), Positives = 387/519 (75%), Gaps = 28/519 (5%)

Query  21   LKDTLWKAADKLRGSMDASQYKDVILGLVFLKYVSDAFDERRAVIAAELAADGIGEEQAG  80
            + + LW+AADKLRGSMDA++YK+V LGL+FLKYVSD+F+E+      EL  D  ++E   
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEK----YEELKQDPYADE---  61

Query  81   PLLEEVDEYRAAGVFWVPPRARWGYLAQHAKGRPAGDPEGQATIGELVDEAMVLIMGTNP  140
               E+ DEY A  +FWVP  ARW Y+ ++AK         ++ IG+++D AM+ I   N 
Sbjct  62   ---EDQDEYLAENIFWVPKEARWQYINDNAK---------KPEIGQIIDKAMIAIENENE  109

Query  141  ALATTLPQIFNKENVDQRRLGELIDLFNSARFTGDGARKARDVLGEVYEYFLGKFAAAEG  200
            +L   LP+ + +  +D+ +LG++IDLF      GD   + +DVLG VYEYF++KFA+AEG
Sbjct  110  SLKGVLPKEYARPALDKEKLGDIIDLFTFK--VGDTESRKQDVLGRVYEYFIAKFASAEG  167

Query  201  KRGGEFYTPPGVVRVLVEVLEPYRGRVYDPCCGSGGMFVQAEKFIERHGEDPQAISVYGQ  260
            K +GEFYTP+++V++LVE++EPY+GR+YDPCCGSGGMFVQ+E+F+E+H    + I++YGQ
Sbjct  168  KNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQ  227

Query  261  ELNERTWRMAKMNLAVHGLTAQLGPRWGDTFARDVHPDVQMDFVMANPPFNIKDWA--RN  318
            E N  TW++AKMNLA++G+  +LG R +DTF  D+H +++ D+++ANPPFN  DW+  R 
Sbjct  228  ESNPTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERL  287

Query  319  AEDARWKFGVPPAGNANYAWIQHILSKLAPGGSAGVVMANGSMSSNSVGEGEIRAALVEV  378
             +D RW+FG+PP GNANYAWI+H++SKLAP G+AG V+ANGSMS+++ +E EIR  L+E 
Sbjct  288  LDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQ  347

Query  379  DLVSCMVALPTQLFRSTGIPVCVWFFakskaagasgsVDRTGQVLFIDARNLGHMVTRAE  438
            DLV C+V+LP QLF ST IPVC+WF++++K+  +    +R  ++LFIDAR++GHMV+R+ 
Sbjct  348  DLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKK--ERENEILFIDAREIGHMVSRTL  405

Query  439  RELSDEDIARIAGTFHAWRGAPSASGASYEDVPGFCYSATLSEIKEAGYALAPGRYVGAP  498
            +E+SDEDI ++A T+HAWRG   +++ +YED++GFC  A L E+K+  Y L+PGRYVG +
Sbjct  406  KEFSDEDIQKVAQTYHAWRG---TNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLA  462

Query  499  EVEDDGEPIEEKIERLTAELFAQFEESARLEQVVREQLG  537
            +VE+D EP+E+K+ER+T+EL  QF  S  LE+ +R  L 
Sbjct  463  DVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLE  501

133) Spica_2702 in NC_015732


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  479 bits (1807),  Expect = 1e-136, Method: Compositional matrix adjust.
 Identities = 279/495 (57%), Positives = 379/495 (77%), Gaps = 8/495 (1%)

Query  20   DMLWKSADKLRKNIDAAEYKHVVLGLIFLKYISDSFEELHAKLEAEIANGADPEDRDEYR  79
            + LW++ADKLR ++DAAEYK+V LGLIFLKY+SDSFEE    L  +    AD ED+DEY 
Sbjct  11   EKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPY--ADEEDQDEYL  68

Query  80   AENVFFVPETARWSYLVSKAKDPEIGKYVDEAMDALEKENASLKGVLPKVYARGNLDPTS  139
            AEN+F VP  ARW Y+  +AK PEIG+ +D AM A+E+EN SLKGVLPK YAR  LD   
Sbjct  69   AENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALDKEK  128

Query  140  LGGLLDLIGNIALGEAKERSADLLGHVFEYFLGEFALAEGKKGGQFYTPKSVVELLVEML  199
            LG+++DL+  + +G++  R  D+LG+V+EYF++ FA AEGK++G+FYTP S+V LLVEM+
Sbjct  129  LGDIIDLF-TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMI  187

Query  200  EPYKGRVFDPCCGSGGMFVQSEKFVMAHQGNINDISIYGQESNQTTWRLCKMNLAIRGID  259
            EPYKGR++DPCCGSGGMFVQSE+FV  HQG ++DI+IYGQESN TTW+L KMNLAIRGID
Sbjct  188  EPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRGID  247

Query  260  SSQVKWNNEGSFLNDAHKDLKADFVIANPPFNDSDWAGELLRNDGRWKFGIPPASNANYA  319
            +    +N + +F ND HK+LKAD+++ANPPFN SDW+ E L +D RW+FGIPP +NANYA
Sbjct  248  NDLGERNAD-TFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYA  306

Query  320  WIQHFLYHLNPTGVAGFVLAKGSLTSKSSGEGEIRKALVEARLVDCIVNLPAKLFLNTQI  379
            WI+H +  L P G AGFVLA+GS+++ + +E EIRK L+E  LV+CIV LP++LF +TQI
Sbjct  307  WIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQI  366

Query  380  PACLWFLSRNKANGGYRNRTDEILFIDARNEGVLINRRTRILREEDIQKIAQTYHEWRKV  439
            P CLWF+S NK++ G ++R +EILFIDAR+ G +++R  + + +EDIQK+AQTYH WR  
Sbjct  367  PVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRGT  426

Query  440  NGN-YQDVKGFCNSATVERVKELDYVLTPGRYVGLPddeddfdfaeRFTQLKAEFEAQLK  498
            N++ Y+D+ GFC+ A +E VK+ +Y+LTPGRYVGL+   D  +  E F Q    + ++L 
Sbjct  427  NDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLA---DVEEDEEPFEQKMERITSELS  483

Query  499  EEAELNKAILDNLKK  513
            E+   +K + D+++K
Sbjct  484  EQFAKSKELEDQIRK  498

134) ETAC_09220 in NC_020796


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  479 bits (1807),  Expect = 1e-136, Method: Compositional matrix adjust.
 Identities = 276/524 (53%), Positives = 381/524 (73%), Gaps = 27/524 (5%)

Query  13   GFEETLWDTANQLRGSVESSEYKHVVLSLVFLKFITDKFEAKRKQLIANGQEAFVDMDVF  72
            GFEE LW++A++LRGS++++EYK+V L+L+FLK+++D FE K  +L    Q+++ D +  
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL---KQDPYADEEDQ  64

Query  73   --YQQDNVFFLPEVARWSYVKARAKQDDIAVIIDTALATIEKSNSALTGALPDNYFSRQG  130
              Y  +N+F +P  ARW Y++  AK+ +I+ IID A+ +IE+ N +L G LP +Y +R +
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEY-ARPA  123

Query  131  LEVKKLASLIDTIENIDTLASECQLSEEDLVGRVYEYFLGRFAASEGKGGGEFYTPKSVV  190
            L+  KL+ +ID +       ++ +   +D++GRVYEYF+++FA++EGK +GEFYTP S+V
Sbjct  124  LDKEKLGDIIDLFTFK---VGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIV  180

Query  191  TLLAEMLEPYEGKIYDPCCGSGGMFVQSLKFVESHQGKSKDIAIYGQELTTTTYKLAKMN  250
             LL EM+EPY G+IYDPCCGSGGMFVQS +FVE HQG+  DIAIYGQE   TT KLAKMN
Sbjct  181  KLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMN  240

Query  251  LAIRGLIGNLGERPADTFFADQHPDLKADFIMANPPFNLKEWRSESELTDDPRFAGFRTP  310
            LAIRG+  +LGER ADTF  D H +LKAD+I+ANPPFN  +W ++  L DD R   F  P
Sbjct  241  LAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDW-GQERLLDDYRWQ-FGIP  298

Query  311  PTGNANYAWILHMLSKLSVDGTAGFVLANGSMSSNTSGEGEIRQKLIEDDRIECMIALPG  370
            P GNANYAWI HM+SKL+ +GTAGFVLANGSMS++  +E EIR++LIE+D +EC+++LPG
Sbjct  299  PKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPG  358

Query  371  QLFYTTQIPVCLWFISKSKQANPRYGYRARSGETLFIDARELGTMVSRTNKELTVADIAR  430
            QLFY+TQIPVCLWFIS++K  N +   + R  E LFIDARE+G MVSRT KE++  DI +
Sbjct  359  QLFYSTQIPVCLWFISNNKGQNGK---KERENEILFIDAREIGHMVSRTLKEFSDEDIQK  415

Query  431  IADTFHAWRCSASELKRRVKAGEISISEYQDQAGFCKVATLDEIKANDFVLTPGRYVGAA  490
            +A+T+HAWR +                 Y+D AGFCKVA L+E+K N+++LTPGRYVG A
Sbjct  416  VAQTYHAWRGTND-------------KPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLA  462

Query  491  EVADDGIAFETKMRELTQTLYRQMNEAQALDAAIRANMEALGYG  534
            +V +D  +FE KM  +T  L  Q   ++ L+  IR ++E+LGYG
Sbjct  463  DVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYG  506

135) hsdM in NC_016052


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  478 bits (1803),  Expect = 2e-136, Method: Compositional matrix adjust.
 Identities = 289/503 (58%), Positives = 394/503 (79%), Gaps = 9/503 (1%)

Query  7    ANLGFEKELWAAADAMRSHVSSSDYRKVVVGLIFLKYVSDAFEYRyqelleegygdeedR  66
            A +GFE  LW AAD +R+ + +++Y++V +GLIFLKYVSD+FE +Y+EL ++ Y+DEED+
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ  64

Query  67   DAYIEKNIFFVPEAARWKKIASSAHSPEIGIVLDEAMRAVEKENNSLKGVLPIIYASPDL  126
            D Y+  NIF VP  ARW+ I  +A  PEIG ++D AM A+E+EN+SLKGVLP  YA P L
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  127  DKRVLGNVVDIFTNINMHDQSEEKDLLGRTYEYFIEQFAAQEGKGGGEFYTPSSIVKTIV  186
            DK  LG+++D+FT    + +S  +D+LGR YEYFI +FA+ EGK +GEFYTPSSIVK +V
Sbjct  125  DKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLV  184

Query  187  EVLKPYKGRVYDPACGSGGMFVQSAKFVKQHSGNINNLSIYGEESNSDTWKMAKMNMAIR  246
            E++ PYKGR+YDP CGSGGMFVQS +FV +H G +++++IYG+ESN+ TWK+AKMN+AIR
Sbjct  185  EMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIR  244

Query  247  GLEADFGPHQADTFLNDIHPTLKADYIMANPPFNVSDWWDESLQDDVRWKYGTPPKSNAN  306
            G++ D+G ++ADTF ND+H  LKADYI+ANPPFN SDW +E L DD RW++G PPK+NAN
Sbjct  245  GIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNAN  304

Query  307  YAWMQHMISHLAPNGKIGLVLANGSLSTLNSGEGEIRKRIIDDDLVEGIVALPSNLFYSV  366
            YAW++HMIS LAPNG  G+VLANGS+ST   +E EIRK +I++DLVE IV+LP++LFYS 
Sbjct  305  YAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYST  364

Query  367  TIPACIWFISRNKKQNGKT------VFIDARKMGTLVDRKHRDFSNDEIKKIADTFESFQ  420
             IP C+WFIS NK QNGK       +FIDAR +G +V R  ++FS+++I+K+A+T+++ +
Sbjct  365  QIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWR  424

Query  421  NGE---LEDAKGFCAVVETADIAKQDYILTPGRYVGIeeqeedaepfdeKMERLTSELSE  477
              +    ED  GFC V +  ++ +++YILTPGRYVG+ + EED EPF++KMER+TSELSE
Sbjct  425  GTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSE  484

Query  478  MFDKSHELEDKIRKRLEEIGFGL  500
             F KS ELED+IRK LE +G+G+
Sbjct  485  QFAKSKELEDQIRKSLEGLGYGV  507

136) hsdM2 in NC_014145


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  478 bits (1800),  Expect = 4e-136, Method: Compositional matrix adjust.
 Identities = 272/515 (53%), Positives = 389/515 (76%), Gaps = 20/515 (3%)

Query  8    TLWATADKLRSSMDAAEYKHIVLGLIFIKYISDAFDERREQLKAQFNDPASDLYLPDAAD  67
             LW +ADKLR+SMDAAEYK++ LGLIF+KY+SD+F+E+ E+LK        D Y  +  +
Sbjct  12   KLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQ-------DPYADEEDQ  64

Query  68   QEAALEERDYYTMANVFWVPEAARWETLRGQAKFWDIGIRIDQALDAIEADNPRLKGILD  127
            +E        Y   N+FWVP  ARW+ + ++AK  +IG  ID+A+ AIE +N  LKG+L 
Sbjct  65   DE--------YLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLP  116

Query  128  KRFGRAQLEPGKMGELVDLVSTIGFGSGTHAKDVLGEVYEYFLGQFASAEGKKGGQFYTP  187
            K ++R+ L+  K+G+++DL +    ++ ++ +DVLG VYEYF+++FASAEGK++G+FYTP
Sbjct  117  KEYARPALDKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTP  176

Query  188  ASVVKVLVEVLAPHKGKVYDPCCGSGGMFVQSEKFIESHGGRFGDISIYGQEANPTTWRL  247
            +S+VK+LVE++ P KG++YDPCCGSGGMFVQSE+F+E H GR++DI+IYGQE+NPTTW+L
Sbjct  177  SSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKL  236

Query  248  VAMNLAIRGMDFNLGKEPADTFHRDQHPDLKADYVLANPPFNISDWGGDRLLDDKRWLYG  307
              MNLAIRG+D +LG   ADTFH D H +LKADY+LANPPFN SDWG +RLLDD RW +G
Sbjct  237  AKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFG  296

Query  308  TPNPSNANYAWLQHILWHLNASGQAGVVLANGSMSSNQNNEGVIRKamveadvvevmvaL  367
             P  +NANYAW++H++  L ++G AG VLANGSMS++ ++E  IRK ++E D+VE +V+L
Sbjct  297  IPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTL  356

Query  368  PPQLFFNTQIPACLWFLTKSKTAHG-RDRRGEVLFIDARKLGRMEGRVFRVFDDEDVAKI  426
            P QLF++TQIP CLWF++++K  +G ++R  E+LFIDAR +G+M +R ++ F DED+ K+
Sbjct  357  PGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKV  416

Query  427  ADTVHRWRQDGQLEGQEPYADVPGFCRAVKLTEIAEHGHVLTPGRYVGAEAVddddEAFS  486
            A+T H WR       + PY D++GFC+  +L E+ ++  +LTPGRYVG   V++D+E+F 
Sbjct  417  AQTYHAWRGT----NDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFE  472

Query  487  EKMERLTAQLSEQMAKGAKLDAVIREKLGGLGYAV  521
            +KMER+T++LSEQ AK+  L+  IR  L GLGY+V
Sbjct  473  QKMERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

137) Namu_1102 in NC_013235


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  475 bits (1789),  Expect = 3e-135, Method: Compositional matrix adjust.
 Identities = 266/523 (51%), Positives = 379/523 (73%), Gaps = 30/523 (5%)

Query  28   LKDTLWKAADKLRGSMDASQYKDVILGLVFLKYVSDAFDERREQIRAELEADGIDEDQID  87
            + + LW+AADKLRGSMDA++YK+V LGL+FLKYVSD+F+E+ E+++ +  AD        
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADE-------  61

Query  88   GFLDDVDEYRGHGVFWVNRDARWSYLAQHAKGIPAVGNEPPKQVGQLIDEAMDYLMDANP  147
               +D DEY ++ +FWV ++ARW Y+ ++AK           ++GQ+ID AM  + + N 
Sbjct  62   ---EDQDEYLAENIFWVPKEARWQYINDNAK---------KPEIGQIIDKAMIAIENENE  109

Query  148  SLRATLPRIYNRDNVDQRRLGELLDLFNSARFTGQGATKARDLLGEVYEYFLEKFAKAEG  207
            SL++ LP+ Y R  +D+ +LG+++DLF      G+  ++ +D+LG VYEYF+ KFA AEG
Sbjct  110  SLKGVLPKEYARPALDKEKLGDIIDLFTFK--VGDTESRKQDVLGRVYEYFIAKFASAEG  167

Query  208  KRGGEFYTPASVVRVLVEVLEPTRGRVYDPCCGSGGMFVQTEKFLEAHHREGSEISVYGQ  267
            K +GEFYTP+S+V++LVE++EP +GR+YDPCCGSGGMFVQ+E+F+E H+    +I++YGQ
Sbjct  168  KNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQ  227

Query  268  ELNERTWRMAKMNLAIHGLSGNLGPRWGDTFARDIHPDVQADYVLANPPFNIKDWARND-  326
            E N  TW++AKMNLAI+G+  +LG R +DTF  D+H +++ADY+LANPPFN  DW+++  
Sbjct  228  ESNPTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERL  287

Query  327  -KDPRWKFGVPPAGNANYAWIQHIISKLAPGGSAGVVMANGSMSTQSGGEGAIRAQLVEA  385
              D RW+FG+PP GNANYAWI+H+ISKLAP G+AG V+ANGSMST + +E  IR +L+E 
Sbjct  288  LDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQ  347

Query  386  DLVSCMVALPTQLFRSTGIPVCLWFFAKDKTVGTGGSVDRSGRVLFIDARSMGNMVDRAE  445
            DLV C+V+LP QLF ST IPVCLWF++++K  G  G  +R   +LFIDAR +G+MV R+ 
Sbjct  348  DLVECIVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMVSRTL  405

Query  446  RSLSDDDIGLIAGTFHAWRGTASARAAGLEYADKPGFCYSATLAEIKAADYALTPGRYVG  505
            + +SD+DI  +A T+HAWRGT         Y D +GFC  A L E+K  +Y LTPGRYVG
Sbjct  406  KEFSDEDIQKVAQTYHAWRGTNDKP-----YEDIAGFCKVANLEEVKNNEYILTPGRYVG  460

Query  506  AAEVEDDGEPIEEKIDRLTKQLFDQFDESERLAKVVRQRLGRL  548
             A+VE+D EP+E+K++R+T +L +QF  S  L   +R+ L  L
Sbjct  461  LADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

138) hsdM1 in NC_014145


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  474 bits (1788),  Expect = 4e-135, Method: Compositional matrix adjust.
 Identities = 273/518 (53%), Positives = 389/518 (76%), Gaps = 20/518 (3%)

Query  5    LKKTLWAAADKLRSSMDAAEYKHIVLGLIFIKYISDAFDERREQLKTQFNDPASDLYLPD  64
            +   LW AADKLR+SMDAAEYK++ LGLIF+KY+SD+F+E+ E+LK        D Y  +
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELK-------QDPYADE  61

Query  65   AADQAAALEERDYYTMANVFWVPEVARWETLRAQAKLWDIGIRIDQALDAIEADNPRLKG  124
                    E++D Y   N+FWVP  ARW+ +  +AK  +IG  ID+A+ AIE +N  LKG
Sbjct  62   --------EDQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKG  113

Query  125  ILDKRYGRAQLEPGKMGELVDLVSTIGFGTGTQAKDVLGEVYEYFLGQFASAEGKKGGQF  184
            +L K Y+R+ L+  K+G+++DL +    +T ++ +DVLG VYEYF+++FASAEGK++G+F
Sbjct  114  VLPKEYARPALDKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEF  173

Query  185  YTPASVVKVLVEVLAPHQGKVYDPCCGSGGMFVQSEKFIESHGGRFGDISIYGQEANPTT  244
            YTP+S+VK+LVE++ P +G++YDPCCGSGGMFVQSE+F+E H GR++DI+IYGQE+NPTT
Sbjct  174  YTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTT  233

Query  245  WRLVAMNLAIRGMDFNLGKEPADTFHRDQHPDLKADYVLANPPFNISDWGGDRLLDDKRW  304
            W+L  MNLAIRG+D +LG   ADTFH D H +LKADY+LANPPFN SDWG +RLLDD RW
Sbjct  234  WKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRW  293

Query  305  LYGTPNPSNANYAWLQHILWHLNANGQAGVVLANGSMSSNQNNEGTIRKamveadvvevm  364
             +G P  +NANYAW++H++  L +NG AG VLANGSMS++ ++E  IRK ++E D+VE +
Sbjct  294  QFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECI  353

Query  365  vaLPPQLFFNTQIPACLWFLTKSKTAHG-RDRRGEVLFIDARKLGRMETRVNRVFDDEDV  423
            V+LP QLF++TQIP CLWF++++K  +G ++R  E+LFIDAR +G+M +R  + F DED+
Sbjct  354  VTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDI  413

Query  424  ARIAGTVHRWRQDGEAGAQEPYADVPGFCRAVKLAEIAEHGHVLTPGRYVGAEAVddddE  483
             ++A T H WR    +  + PY D++GFC+  +L E+ ++  +LTPGRYVG   V++D+E
Sbjct  414  QKVAQTYHAWR----GTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEE  469

Query  484  AFNEKMERLTTLLAEQMAKGAELDAVIREKLGRIGYAV  521
            +F++KMER+T+ L+EQ AK+ EL+  IR  L  +GY+V
Sbjct  470  PFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

139) hsdM3 in NC_014145


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  474 bits (1788),  Expect = 4e-135, Method: Compositional matrix adjust.
 Identities = 273/518 (53%), Positives = 389/518 (76%), Gaps = 20/518 (3%)

Query  5    LKKTLWAAADKLRSSMDAAEYKHIVLGLIFIKYISDAFDERREQLKTQFNDPASDLYLPD  64
            +   LW AADKLR+SMDAAEYK++ LGLIF+KY+SD+F+E+ E+LK        D Y  +
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELK-------QDPYADE  61

Query  65   AADQAAALEERDYYTMANVFWVPEVARWETLRAQAKLWDIGIRIDQALDAIEADNPRLKG  124
                    E++D Y   N+FWVP  ARW+ +  +AK  +IG  ID+A+ AIE +N  LKG
Sbjct  62   --------EDQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKG  113

Query  125  ILDKRYGRAQLEPGKMGELVDLVSTIGFGTGTQAKDVLGEVYEYFLGQFASAEGKKGGQF  184
            +L K Y+R+ L+  K+G+++DL +    +T ++ +DVLG VYEYF+++FASAEGK++G+F
Sbjct  114  VLPKEYARPALDKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEF  173

Query  185  YTPASVVKVLVEVLAPHQGKVYDPCCGSGGMFVQSEKFIESHGGRFGDISIYGQEANPTT  244
            YTP+S+VK+LVE++ P +G++YDPCCGSGGMFVQSE+F+E H GR++DI+IYGQE+NPTT
Sbjct  174  YTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTT  233

Query  245  WRLVAMNLAIRGMDFNLGKEPADTFHRDQHPDLKADYVLANPPFNISDWGGDRLLDDKRW  304
            W+L  MNLAIRG+D +LG   ADTFH D H +LKADY+LANPPFN SDWG +RLLDD RW
Sbjct  234  WKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRW  293

Query  305  LYGTPNPSNANYAWLQHILWHLNANGQAGVVLANGSMSSNQNNEGTIRKamveadvvevm  364
             +G P  +NANYAW++H++  L +NG AG VLANGSMS++ ++E  IRK ++E D+VE +
Sbjct  294  QFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECI  353

Query  365  vaLPPQLFFNTQIPACLWFLTKSKTAHG-RDRRGEVLFIDARKLGRMETRVNRVFDDEDV  423
            V+LP QLF++TQIP CLWF++++K  +G ++R  E+LFIDAR +G+M +R  + F DED+
Sbjct  354  VTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDI  413

Query  424  ARIAGTVHRWRQDGEAGAQEPYADVPGFCRAVKLAEIAEHGHVLTPGRYVGAEAVddddE  483
             ++A T H WR    +  + PY D++GFC+  +L E+ ++  +LTPGRYVG   V++D+E
Sbjct  414  QKVAQTYHAWR----GTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEE  469

Query  484  AFNEKMERLTTLLAEQMAKGAELDAVIREKLGRIGYAV  521
            +F++KMER+T+ L+EQ AK+ EL+  IR  L  +GY+V
Sbjct  470  PFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

140) KN400_0451 in NC_017454


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  472 bits (1778),  Expect = 3e-134, Method: Compositional matrix adjust.
 Identities = 278/509 (55%), Positives = 383/509 (76%), Gaps = 16/509 (3%)

Query  13   ANIGYEAELWQMADALRGSMDAAEYKHVALGLLFLKYISDAFEEKHAQLESERSQGADPE  72
            A IG+E  LWQ AD LRGSMDAAEYK+VALGL+FLKY+SD+FEEK  +L  +    AD E
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPY--ADEE  62

Query  73   DPDEYRALNIFWVPPEARWSHLKAQAKQPTIGQLVDDAMAGIERDNPALKGVLPKEYARP  132
            D DEY A NIFWVP EARW  ++ +AK+P IGQ++D AM +IE +N +LKGVLPKEYARP
Sbjct  63   DQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARP  122

Query  133  ALDKQRLGQLIDLISNIRVGDAESRAKDVLGRVYEYFLSQFASAEGKKGGEFYTPRCVVR  192
            ALDK++LG++IDL++ ++VGD+ESR +DVLGRVYEYF+++FASAEGK++GEFYTP  +V+
Sbjct  123  ALDKEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVK  181

Query  193  LLVEMIEPYKGRVYDPCCGSSGMFVQSVEFIRahangngnsgnakaDISIYGQESNYTTW  252
            LLVEMIEPYKGR+YDPCCGS+GMFVQS  F+        +      DI+IYGQESN TTW
Sbjct  182  LLVEMIEPYKGRIYDPCCGSGGMFVQSERFV-------EKHQGRLDDIAIYGQESNPTTW  234

Query  253  RLAKMNLAIRGIDGQIA--HGDTFHNDRFPDLKADFILANPPFNISDWGGDRLRDDKRWQ  310
            +LAKMNLAIRGID +++  ++DTFHND   +LKAD+ILANPPFN SDWG +RL DD RWQ
Sbjct  235  KLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQ  294

Query  311  YGVPPTGNANFAWVQHMIYHLAPKGVAGFILGNISLTSETGGEDTIRKGIVDANLVDCIV  370
            +G+PP GNAN+AW++HMI  LAP+G AGF+L+N S+++   +E  IRK +++ +LV+CIV
Sbjct  295  FGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIV  354

Query  371  TLPDRLFYSTPIPAGIWILRRGRDFDREVNKPNREILFIDASRLGKSVTRTHRELTDDDL  430
            TLP++LFYST IP  +W++   ++ +   +  + EILFIDA  +G  V+RT +E++D+D+
Sbjct  355  TLPGQLFYSTQIPVCLWFISNNKG-QNGKKERENEILFIDAREIGHMVSRTLKEFSDEDI  413

Query  431  ERIACTYRNWQKCSD-AYLDVEGFCRRVELEEVIANGYNLLPAAYVNQGHLRATGGPQLH  489
            +++A TY+ W+  +D +Y D+ GFC+  +LEEV  N Y L P+ YV  +++     P  +
Sbjct  414  QKVAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQ  473

Query  490  DVIHSNFRNETSQSLDRVTDLNKAFEESL  518
             +    + +E S+ + +  +L+  +  SL
Sbjct  474  KM--ERITSELSEQFAKSKELEDQIRKSL  500

141) FNFX1_0289 in NC_017450


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  471 bits (1774),  Expect = 4e-134, Method: Compositional matrix adjust.
 Identities = 267/441 (61%), Positives = 348/441 (79%), Gaps = 11/441 (2%)

Query  11   SIEVTLWKAADKLRKNIDAAEYKHVVLGLVFLKYISDSFEERYAELQSEEWADPEDKDEY  70
            ++E  LW+AADKLR ++DAAEYK+V LGL+FLKY+SDSFEE+Y EL+ +  AD ED+DEY
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDEY  67

Query  71   LESNIFFVPTKARWSYLLANAKLPEIGKLVDEAMDEIERENNSLKGVLPKVYARDNLNST  130
            L  NIF VP  ARW Y+  NAK PEIG+++D AM  IE EN+SLKGVLPK YAR  L+  
Sbjct  68   LAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALDKE  127

Query  131  TLGELIDIIGNISIGDTQSRSADVLGHVFEYFLGEFALAEGKQGGQFYTPKSVVELLVKM  190
             LG++ID++  + +GDT+SR  DVLG+V+EYF++ FA AEGK++G+FYTP S+V LLV M
Sbjct  128  KLGDIIDLF-TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEM  186

Query  191  LEPYKGRVFDPCCGSGGMFVQSEKFVESHQGQINDISIYGQESNQTTWRLCKMNLAIRGI  250
            +EPYKGR++DPCCGSGGMFVQSE+FVE HQG+++DI+IYGQESN TTW+L KMNLAIRGI
Sbjct  187  IEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRGI  246

Query  251  DSSQVKWNSEGSFLNDAHKDLKADYIIANPPFNISDWSGELLRNDARWQYGTPPAGNANY  310
            D+    +N++ +F ND HK+LKADYI+ANPPFN SDW+ E L +D RWQ+G PP GNANY
Sbjct  247  DNDLGERNAD-TFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANY  305

Query  311  AWIQHFLYHLAPTGVAGFVLAKGALTSNTSGEGDIRKALVEANLVDCIVNLPAKLFLNTQ  370
            AWI+H +  LAP G AGFVLA+G+++++  +E +IRK L+E +LV+CIV LP++LF +TQ
Sbjct  306  AWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQ  365

Query  371  IPASLWFIKRGR-------KTKDILFIDARNKGHLINRRTKEFSDDDITEIAQTYHNWKV  423
            IP  LWFI   +       + ++ILFIDAR+ GH+++R  KEFSD+DI  +AQTYH W+ 
Sbjct  366  IPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRG  425

Query  424  --EKDYEDIKGFCKSASYEEV  442
              +K YEDI GFCK A+ EEV
Sbjct  426  TNDKPYEDIAGFCKVANLEEV  446

142) Cag_1120 in NC_007514


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  470 bits (1770),  Expect = 1e-133, Method: Compositional matrix adjust.
 Identities = 268/467 (58%), Positives = 365/467 (79%), Gaps = 13/467 (2%)

Query  19   LEKQLWKTADKLRKNIDAAEYKHIVLGLIFLKYISDSFEELYAKLQAEEANGADPEDKDE  78
            +E +LW++ADKLR ++DAAEYK++ LGLIFLKY+SDSFEE Y  L+ +    AD ED+DE
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPY--ADEEDQDE  66

Query  79   YKAENVFFVPQDARWNYLQSKAKQPEIGKFVDDAMDVIEKENASLKGVLPKVFARQNLDP  138
            Y AEN+F VP++ARW+Y++ +AK+PEIG+++D AM  IE+EN SLKGVLPK +AR  LD 
Sbjct  67   YLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALDK  126

Query  139  TSLGELIDLVGNIALGDAKARSADVLGHVFEYFLGEFALAEGKKGGQFYTPRSVVELLVE  198
              LG++IDL   + +GD+ +R  DVLG+V+EYF++ FA AEGK++G+FYTP S+V LLVE
Sbjct  127  EKLGDIIDLF-TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVE  185

Query  199  MLEPYKGRVFDPCCGSGGMFVHSETFVTEHQGKVNDISIYGQESNQTTWRLCKMNLAIRG  258
            M+EPYKGR++DPCCGSGGMFV+SE FV  HQG+++DI+IYGQESN TTW+L KMNLAIRG
Sbjct  186  MIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRG  245

Query  259  IDSSQVKWNNEGSFLNDAHKDLKADYIIANPPFNVSDWGGDLMRSDGRWQYGTPPTGNAN  318
            ID+    +N + +F ND HK+LKADYI+ANPPFN SDWG + +  D RWQ+G PP GNAN
Sbjct  246  IDNDLGERNAD-TFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNAN  304

Query  319  FAWMQHFIYHLAPNGQAGVVLAKGALTSKTSGEGDIRKALVENGLIDCIVNLPAKLFLNT  378
            +AW++H I  LAPNG AG VLA+G++++   +E +IRK L+E++L++CIV LP++LF +T
Sbjct  305  YAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYST  364

Query  379  QIPAALWFLRRDAKFFVSTNGKFRDRSNEILFIDTRNLGHLINRRTRELSKEDIYKIAST  438
            QIP  LWF+  +     + NGK ++R NEILFID+R++GH+++R  +E+S EDI K+A T
Sbjct  365  QIPVCLWFISNNK----GQNGK-KERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQT  419

Query  439  YHAWRTLPEALNGSAYADILGFCASVAISKVAELDYVLTPGRYVGLP  485
            YHAWR    + N+ +Y DI GFC    +  V + +Y+LTPGRYVGL+
Sbjct  420  YHAWR----GTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLA  462

143) MROS_1293 in NC_018178


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  469 bits (1769),  Expect = 1e-133, Method: Compositional matrix adjust.
 Identities = 277/458 (61%), Positives = 366/458 (80%), Gaps = 8/458 (1%)

Query  17   EKQLWKAADKLRKNIDAAEYKHIVLGLIFLKYISDSFERHyellkkgegeyegADPEDRD  76
            E +LW+AADKLR ++DAAEYK++ LGLIFLKY+SDSFE  YE LK++      AD ED+D
Sbjct  10   EEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPY----ADEEDQD  65

Query  77   EYKAENIFFVPPSARWSYLQKRAKLPEIGKDIDSAMDAIERDNPSLKDVLPKVYARGNID  136
            EY AENIF VP  ARW Y++  AK PEIG+ ID AM AIE +N SLK+VLPK YAR  +D
Sbjct  66   EYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALD  125

Query  137  PTNLGGLIDLIS-NISITQ-KDGDFLGKVFEYFLGQFALAEGKKGGQFYTPRSVVQLLVE  194
              +LG++IDL++ +++ T+ +  D LG+V+EYF+++FA AEGK++G+FYTP S+V+LLVE
Sbjct  126  KEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVE  185

Query  195  MLEPYKGRVFDPCCGSGGMFVQSEKFVESHQGNVNDISIYGQESNLTTWRLCKMNLAIRG  254
            M+EPYKGR++DPCCGSGGMFVQSE+FVE HQG ++DI+IYGQESN TTW+L KMNLAIRG
Sbjct  186  MIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRG  245

Query  255  IDSSQVKWNNEGSFLNNAHKDLKADFVIANPPFNDSDWSGELLRKDARWQYGIPPVNNAN  314
            ID+    +N + +F N+ HK+LKAD+++ANPPFN SDW+ E L  D RWQ+GIPP  NAN
Sbjct  246  IDNDLGERNAD-TFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNAN  304

Query  315  YAWIQHFIYHLAPNGQAGFVLAKGALTSKTSGEGEIRKALVEARLIDCIVNLPSKLFLNT  374
            YAWI+H I  LAPNG AGFVLA+G++++   +E EIRK L+E  L++CIV LP++LF +T
Sbjct  305  YAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYST  364

Query  375  QIPASLWFINRNKSNGKFRNRKDEILFIDARNMGHLINRRTREFSEEDIQKIASTFHNWR  434
            QIP  LWFI+ NK++   ++R +EILFIDAR++GH+++R  +EFS+EDIQK+A T+H WR
Sbjct  365  QIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWR  424

Query  435  NPDGK-YEDIKGFCKSATIEEVAALDYVLTPGRYVGLP  471
              ++K YEDI GFCK A +EEV   +Y+LTPGRYVGL+
Sbjct  425  GTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLA  462

144) EcE24377A_2909 in NC_009801


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  469 bits (1767),  Expect = 2e-133, Method: Compositional matrix adjust.
 Identities = 273/497 (55%), Positives = 383/497 (78%), Gaps = 10/497 (2%)

Query  17   LWKAADKLRKNIDAAEYKHVVLGLIFLKYISDSFESHYELLKAGEGEFAGADPEDKDEYT  76
            LW+AADKLR ++DAAEYK+V LGLIFLKY+SDSFE  YE LK  ++ +A  D ED+DEY 
Sbjct  13   LWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELK--QDPYA--DEEDQDEYL  68

Query  77   AYNIFFVPELARWNYLISKAKLPEIGKLVDDAMELIEAGNPQLKGVLPKVYARQNLDATV  136
            A NIF VP  ARW+Y+  +AK PEIG+++D AM  IE  N  LKGVLPK YAR  LD   
Sbjct  69   AENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALDKEK  128

Query  137  LGELIDLIGNIALGDAKARSADVLGHVFEYFLGEFALAEGKQGGQFYTPKSIVSLLVNML  196
            LG++IDL+  + +GD+ +R  DVLG+V+EYF++ FA AEGK++G+FYTP SIV LLV+M+
Sbjct  129  LGDIIDLF-TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMI  187

Query  197  EPYKGRVFDPCCGSGGMFVQSEKFVEAHQGNIDDISIYGQESNQTTWRLAKMNLAIRGIN  256
            EPYKGR++DPCCGSGGMFVQSE+FVE HQG +DDI+IYGQESN TTW+LAKMNLAIRGI+
Sbjct  188  EPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRGID  247

Query  257  SEHVRWNNEGSFLNDAHKDLKSDFIIANPPFNVSDWSGEQLRGDARWQYGIPPAGNANFA  316
            ++   +N + +F ND HK+LK+D+I+ANPPFN SDW+ E+L +D RWQ+GIPP GNAN+A
Sbjct  248  NDLGERNAD-TFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYA  306

Query  317  WMQHFLYHLSPKGQAGVVLAKGALTSKSSGEGDIRAALVKDANVIDCIVNLPAKLFLNTQ  376
            W++H +  L+P+G AG VLA+G++++ + +E +IR  L+ + ++++CIV LP++LF +TQ
Sbjct  307  WIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLI-EQDLVECIVTLPGQLFYSTQ  365

Query  377  IPAALWFMRRDRENSSHYRDRSKEILFIDARNLGHLINRRSKVLSDEDIKTIADTYHNWR  436
            IP  LWF+  ++ +++  ++R +EILFIDAR++GH+++R  K +SDEDI+ +A+TYH WR
Sbjct  366  IPVCLWFISNNKGQNGK-KERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWR  424

Query  437  NKGGD-YEDVAGFCASVDINEVAKLDYVLTPGRYVGLAdeeddfdf-KERFTALKAEFEA  494
               +  YED+AGFC   +++EV + +Y+LTPGRYVGLAD E+D +   ++   + +E+  
Sbjct  425  GTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSE  484

Query  495  QLEEEAHLNKSIAESLA  511
            Q+    +L+  I  SL 
Sbjct  485  QFAKSKELEDQIRKSLE  501

145) NT01EI_1012 in NC_012779


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  469 bits (1767),  Expect = 2e-133, Method: Compositional matrix adjust.
 Identities = 273/524 (53%), Positives = 383/524 (74%), Gaps = 27/524 (5%)

Query  17   GFEETLWDTANQLRGSVESSEYKHVVLSLVFLKFITDKFEAKRKQLMANGQEAFVDMDVF  76
            GFEE LW++A++LRGS++++EYK+V L+L+FLK+++D FE K  +L    Q+++ D +  
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELK---QDPYADEEDQ  64

Query  77   --YQQDNVFFLPEAARWSYVKARAKQDDIAVIIDSALATIEKSNSALTGALPDNYFSRQG  134
              Y  +N+F +P  ARW Y++  AK+ +I+ IID A+ +IE+ N +L G LP +Y +R +
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEY-ARPA  123

Query  135  LEVKKLASLIDTIENIDTLASECQLSEEDLVGRVYEYFLGRFAASEGKGGGEFYTPKSVV  194
            L+  KL+ +ID +       ++ +   +D++GRVYEYF+++FA++EGK +GEFYTP S+V
Sbjct  124  LDKEKLGDIIDLFTFK---VGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIV  180

Query  195  TLLAEMLEPYEGKIYDPCCGSGGMFVQSLKFVESHQGKSKDIAIYGQELTTTTYKLAKMN  254
             LL EM+EPY G+IYDPCCGSGGMFVQS +FVE HQG+  DIAIYGQE   TT KLAKMN
Sbjct  181  KLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMN  240

Query  255  LAIRGLIGNLGERPADTFFADQHPDLKADFIMANPPFNLKEWRSESELTNDPRFAGFRTP  314
            LAIRG+  +LGER ADTF  D H +LKAD+I+ANPPFN  +W ++  L +D R   F  P
Sbjct  241  LAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDW-GQERLLDDYRWQ-FGIP  298

Query  315  PTGNANYAWILHMLAKLSVDGTAGFVLANGAMSSNTSGEGEIRQKLIEDDRIECMIALPG  374
            P GNANYAWI HM++KL+ +GTAGFVLANG+MS++  +E EIR++LIE+D +EC+++LPG
Sbjct  299  PKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPG  358

Query  375  QLFYTTQIPVCLWFISKSKQANPRYGYRARSGETLFIDARELGTMVSRTNKELTAADIAR  434
            QLFY+TQIPVCLWFIS++K  N +   + R  E LFIDARE+G MVSRT KE++  DI +
Sbjct  359  QLFYSTQIPVCLWFISNNKGQNGK---KERENEILFIDAREIGHMVSRTLKEFSDEDIQK  415

Query  435  IADTFHAWRCSESELKRRVKAGEISISEYQDHAGFCKVATLDEIKANDFVLTPGRYvgaa  494
            +A+T+HAWR ++                Y+D AGFCKVA L+E+K N+++LTPGRYVG A
Sbjct  416  VAQTYHAWRGTND-------------KPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLA  462

Query  495  evaddgvaFETKMRELTQTLYRQINEAQALDAAIRANMEALGYG  538
            +V +D  +FE KM  +T  L  Q+  ++ L+  IR ++E+LGYG
Sbjct  463  DVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYG  506

146) FMG_1377 in NC_010376


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  468 bits (1765),  Expect = 2e-133, Method: Compositional matrix adjust.
 Identities = 291/505 (58%), Positives = 386/505 (77%), Gaps = 11/505 (2%)

Query  7    ANIGFEKQIWDAACVLWGHIPAAEYRKVIIGLIFLRYISTAFEQRYKELVEEGDGFEDDR  66
            A IGFE ++W+AA  L+G + AAEY++V +GLIFL+Y+S +FE++Y EL ++  + E+D+
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ  64

Query  67   DAYTMENIFFVPKEARWSTIAAAAHSPEIGTVIDSAMRAIETENKNLKNVLPKNYGSPdl  126
            D Y  ENIF VPKEARW  I   A  PEIG +ID AM AIE EN +LK VLPK+Y+ P L
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  127  dkkvlgdvvdIFTNNIDMSDTEASEDLLGRTYEYCIAQFAEKEGVGGGEFYTPSSVVKTL  186
            DK  LGD++D+FT +++ +++   +D+LGR YEY IA+FA  EG  +GEFYTPSS+VK L
Sbjct  125  DKEKLGDIIDLFTFKVGDTES-RKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL  183

Query  187  VSILKPFENCRVYDCCCGSGGMFVQSEKFLEAHGAKRGAISVYGQEANPDTWKMAKMNMA  246
            V ++ P+   R+YD CCGSGGMFVQSE+F+E H ++ + I++YGQE+NP TWK+AKMN+A
Sbjct  184  VEMIEPYKG-RIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLA  242

Query  247  IRGIDADFGPYNADTFSNDLHPTLKADFILANPPFNYHPWGQQALQDDKRWKYGLPPAGN  306
            IRGID D+G  NADTF NDLH  LKAD+ILANPPFN   WGQ+ L DD RW++G+PP GN
Sbjct  243  IRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGN  302

Query  307  ANYAWIQHMIHHLAPNGKIGLVLANGALSTQTSGEGTIRKKIIEDDLIEGIVAMPTQLFY  366
            ANYAWI+HMI  LAPNG  G+VLANG++ST   +E  IRK++IE+DL+E IV++P QLFY
Sbjct  303  ANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFY  362

Query  367  SVTIPVTLWFISKNKKQKGKT------LFIDARKMGHMVDRKHRDFDEEDIQKLADTFTA  420
            S  IPV LWFIS+NK Q+GK       LFIDAR +GHMV R  ++F +EDIQK+A+T+ A
Sbjct  363  STQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHA  422

Query  421  FQNGT---LEDVKGFCAVASLEDIAKQDYILTPGRYVGIeeqeddgepfeeKMARLTSEL  477
             +       ED+ GFC VA+LE++ +++YILTPGRYVG+ + E+D EPFE+KM R+TSEL
Sbjct  423  WRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSEL  482

Query  478  SDMFEKSHELEDEIRRKLGAIGYEI  502
            S+ F KS ELED+IR+ L ++GY +
Sbjct  483  SEQFAKSKELEDQIRKSLEGLGYGV  507

147) PP1Y_AT2797 in NC_015580


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  468 bits (1763),  Expect = 4e-133, Method: Compositional matrix adjust.
 Identities = 287/527 (55%), Positives = 389/527 (74%), Gaps = 25/527 (4%)

Query  94   GDLGFEADLFKAADKLRGNLEPSEYKHIALGLIFLKYISEAFEAQHTRLSGedyadpedp  153
            + +GFE  L +AADKLRG+++++EYK++ALGLIFLKY+S++FE +   L  + YAD ED 
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ  64

Query  154  eeyLAANVFWVPPEARWAHLQANAKRPEITFVDVTTGREKKGDIGGLIDNAMEAIEQANI  213
            +EYLA N+FWVP EARW  ++ NAK+PEI               G +ID+AM AIE+ N 
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEI---------------GQIIDKAMIAIENEN-  108

Query  214  KVLKDVLPKNYSRPQLDKTMLGELIDLFSNVDMRGDHGQARDRLGRAYEYFISQFAGAEG  273
              LK+VLPK+Y+RP LDK  LG++IDLF+   + + +++ +D LGR YEYFI++FA+AEG
Sbjct  109  ESLKGVLPKEYARPALDKEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEG  167

Query  274  RRGGEFYTPRSVVQTIVEMLEPGQGRVYDPCCGSGGMFVQSERFIEDHQGRRSDIAIYGQ  333
            + +GEFYTP S+V+ +VEM+EP +GR+YDPCCGSGGMFVQSERF+E HQGR  DIAIYGQ
Sbjct  168  KNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQ  227

Query  334  ERNHTTWRLCRMNLAVRGIDADIRWNNEGSFLRDEFAQTKFDFVMANPPFNISDWWQPQL  393
            E N TTW+L +MNLA+RGID D+   N ++F  D     K D+++ANPPFN SDW Q +L
Sbjct  228  ESNPTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERL  287

Query  394  EGDARWSFGTPPQGNANFAWLQHILHHLAPRGTAGVVLANgsmssqqsgegeLRKALIEA  453
             +D RW FG PP+GNAN+AW++H++  LAP GTAG VLANGSMS+   +E E+RK LIE 
Sbjct  288  LDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQ  347

Query  454  DHVDCMVALPGQLFYSTQIPACLWFLARDKSANGHRDRRGEILFIDARKLGHLVDRTRRE  513
            D V+C+V+LPGQLFYSTQIP CLWF++ +K+ NG ++R  EILFIDAR +GH+V RT +E
Sbjct  348  DLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKE  407

Query  514  FSVEDISLIADTYHRWRGKPEEVAAAGLQPYADEPGFCRSATRDEVRGHGHVLTPGRYVG  573
            FS EDI  +A+TYH WRG  +       +PY D +GFC+ A  +EV+ +  +LTPGRYVG
Sbjct  408  FSDEDIQKVAQTYHAWRGTND-------KPYEDIAGFCKVANLEEVKNNEYILTPGRYVG  460

Query  574  AADLEDDGVSFEERFGGLRAKLAEQFEAGRVLEARIEAAL-GKTYAV  619
             AD+E+D  +FE++   + + L+EQF  ++ LE +I  +L G  Y+V
Sbjct  461  LADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

148) Mpe_A0005 in NC_008825


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  467 bits (1760),  Expect = 6e-133, Method: Compositional matrix adjust.
 Identities = 270/524 (52%), Positives = 371/524 (71%), Gaps = 35/524 (6%)

Query  8    TLWATADKLRANMDAAEYKHLVLGLIFLKYISDTFQARRTELTARFADPADEYHLDGATP  67
             LW +ADKLR++MDAAEYK++ LGLIFLKY+SD+F+ +  EL        D Y       
Sbjct  12   KLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQ------DPY-------  58

Query  68   ADIAAELEDRDYYREANVFWVPEAARWEAIRSAAKQPDIGKRIDDALSLIEAENPKLKGI  127
                A+ ED+D Y   N+FWVP  ARW+ I   AK+P+IG+ ID A+  IE EN  LKG+
Sbjct  59   ----ADEEDQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGV  114

Query  128  LDKRFARAQLPDGKLGELVDLVSTIGFGESAATARDVLGQVYEYFLGMFASAEGKRGGQF  187
            L K +AR+ L   KLG+++DL  T+  G++ +  +DVLG+VYEYF++ FASAEGK +G+F
Sbjct  115  LPKEYARPALDKEKLGDIIDLF-TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEF  173

Query  188  YTPRSIVKTLVAVLAPHHGKVYDPCCGSGGMFVQSEEFILSHGGKLGDVAIFGQEANPTT  247
            YTP SIVK LV ++ P  G++YDPCCGSGGMFVQSE F+  H G+L+D+AI+GQE+NPTT
Sbjct  174  YTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTT  233

Query  248  WRLAAMNLAIRGIDFNLGREPADTFTKNQFPDLRADFILANPPFNISDWWHASLTGDARW  307
            W+LA MNLAIRGID +LG   ADTF ++   +L+AD+ILANPPFN SDW +  L +D RW
Sbjct  234  WKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRW  293

Query  308  HYGDPPQGNANYAWLQHMLHHLKPGGRAGIVLANGSMSSSQNNEGQIRAATVEADVVEVM  367
            ++G PP+GNANYAW++HM+  L P G AG+VLANGSMS+S ++E +IR   +E D+VE +
Sbjct  294  QFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECI  353

Query  368  IALPGQLFFNTQIPACLWFLVKD-----KRQRRGEVLFIDARKLATMISRVQCELKDEVI  422
            ++LPGQLF++TQIP CLWF+ ++     K++R  E+LFIDAR ++ M+SR   E+ DE I
Sbjct  354  VTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDI  413

Query  423  ERIAGTVAAWRASPPLPLAGGGRGEGASSYADIPGYCRSVKLAEIAEHGHVLTPGRYVGA  482
            +++A T  AW            RG    +Y DI+G+C+  +L E+ ++  +LTPGRYVG 
Sbjct  414  QKVAQTYHAW------------RGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGL  461

Query  483  EAVDDDGESFEAKMQALTEKLGEQMAKGAELDAVIRQKLGGLGY  526
              V++D E+FE KM+ +T  L+EQ AK+ EL+  IR+ L GLGY
Sbjct  462  ADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGY  505

149) Nit79A3_0882 in NC_015731


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  465 bits (1753),  Expect = 2e-132, Method: Compositional matrix adjust.
 Identities = 277/467 (60%), Positives = 362/467 (78%), Gaps = 16/467 (3%)

Query  13   LEKQLWKAADKLRKNIDAAEYKHVVLGLIFLKYISDSFEEHFAKLQAGFGDYAGSDPEDK  72
            +E +LW+AADKLR ++DAAEYK+V LGLIFLKY+SDSFEE +  L+ +   YA  D ED+
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQD--PYA--DEEDQ  64

Query  73   DEYKAENIFYVPPESRWPHLVAQAKQPDIGKFADAAMDAIEKENPSLKGVLPKVFARQNL  132
            DEY AENIF VP E+RW  +  +AK+P+IG++ D AM AIE+EN SLKGVLPK +AR  L
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  133  DPASLGGLIDLVGNIALGDAKSRSADVLGHVFEYFLGEFALAEGKQGGQFYTPRSIVELL  192
            D   LG++IDL   + +GD+ SR  DVLG+V+EYF++ FA AEGK++G+FYTP SIV LL
Sbjct  125  DKEKLGDIIDLF-TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL  183

Query  193  VMMLEPYKGRVFDPCCGSGGMFVQSEKFVEEHQGRINDISIYGQESNQTTWRLAKMNLAI  252
            V M+EPYKGR++DPCCGSGGMFVQSE+FVE HQGR++DI+IYGQESN TTW+LAKMNLAI
Sbjct  184  VEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAI  243

Query  253  RGIDSSQVKWNNEGSFLNDAHKDLKADFIIANPPFNVSDWSGELLRNDGRWQFGTPPAGN  312
            RGID+    +N + +F ND HK+LKAD+I+ANPPFN SDW+ E L +D RWQFG PP GN
Sbjct  244  RGIDNDLGERNAD-TFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGN  302

Query  313  ANFAWLQHFAYHLSPAGIAGVVLAKGALTSKTSGEGEIRKNLIAEGNLIDCIVNLPGKLF  372
            AN+AW++H    L+P G AG VLA+G++++   +E EIRKNLI + +L++CIV LPG+LF
Sbjct  303  ANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQ-DLVECIVTLPGQLF  361

Query  373  LNTQIPAGLWFM--NRARNNGHPRKDQILFIDARNLGHLINRRTLELSREDIQKIASTYH  430
             +TQIP  LWF+  N+++N    R ++ILFIDAR++GH+++R   E+S EDIQK+A TYH
Sbjct  362  YSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYH  421

Query  431  AWRNASVIPAQAGIQPYEDIKGFCASVPVERVVELDYVLTPGRYVGL  477
            AWR ++        +PYEDI GFC    +E V + +Y+LTPGRYVGL
Sbjct  422  AWRGTND-------KPYEDIAGFCKVANLEEVKNNEYILTPGRYVGL  461

150) HMPREF0389_01041 in NC_016630


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  465 bits (1753),  Expect = 2e-132, Method: Compositional matrix adjust.
 Identities = 285/514 (56%), Positives = 393/514 (77%), Gaps = 21/514 (4%)

Query  7    ANIGFEKQIWDAACVLWGHIPAAEYRKVIVGLIFLRYISSAFEKRYEELLKEGDGFENDR  66
            A IGFE ++W+AA  L+G + AAEY++V +GLIFL+Y+S +FE +YEEL ++  + E+D+
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ  64

Query  67   DAYAEENIFFVPKEARWSKISSAAHTPEIGTVIDDAMRAIEKENITLKNVLPKNYASPDL  126
            D Y  ENIF VPKEARW  I+  A  PEIG +ID AM AIE+EN +LK VLPK+YA P L
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  127  DKRVLGEVVDLFTNEVKMDGTEASK-DLLGRTYEYCIAQFAAYEGTKGGEFYTPSSIVKT  185
            DK  LG+++DLFT   K+++TE+ K D+LGR YEY IA+FA+ EG ++GEFYTPSSIVK 
Sbjct  125  DKEKLGDIIDLFT--FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKL  182

Query  186  IVAILKPFNNCRVYDPCCGSGGMFVQSEKFVQAHSDNRGNISVYGQESNADTWKMAKMNM  245
            +V ++ P++  R+YDPCCGSGGMFVQSE+FV+ H +  ++I++YGQESN+ TWK+AKMN+
Sbjct  183  LVEMIEPYKG-RIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNL  241

Query  246  AIRGIDANFGSYHADTFFNDIHKTLKSDFIMANPPFNLSNWGADKLKEDVRWKYGTPPSG  305
            AIRGID ++G  +ADTF ND+HK LK+D+I+ANPPFN S+WG ++L +D RW++G PP G
Sbjct  242  AIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKG  301

Query  306  NANYAWIQHMIHHLAANGKIGLVLANGALSSQSSGEGEIRKKIIEDDLVEGIVALPTQLF  365
            NANYAWI+HMI  LA+NG  G+VLANG++S+ + +E EIRK++IE+DLVE IV+LP QLF
Sbjct  302  NANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLF  361

Query  366  YSVTIPVTLWFITKNKKQKGKT------LFIDARKMGYMVDRKHRDFTEGIQEDGSLGDI  419
            YS  IPV LWFI++NK Q+GK       LFIDAR +G MV R  ++F++         DI
Sbjct  362  YSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSD--------EDI  413

Query  420  DLLAKTFEDFQNG---VLEEKKGFSAIASIEDIAKQDYILTPGRYVGIeeqeddgepfee  476
            + +A+T++  +       E+  GF  +A++E++ +++YILTPGRYVG+ + E+D EPFE+
Sbjct  414  QKVAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQ  473

Query  477  KMTRLTSELSDMFKKSHELEEEIRKKLGAIGYEV  510
            KM R+TSELS+ F KS ELE++IRK L ++GY V
Sbjct  474  KMERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

151) APECO78_16840 in NC_020163


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  465 bits (1753),  Expect = 2e-132, Method: Compositional matrix adjust.
 Identities = 269/499 (54%), Positives = 380/499 (77%), Gaps = 12/499 (2%)

Query  17   LWKAADKLRKNIDAAEYKHVVLGLIFLKYISDSFESHYELLKAGKGEFAGADPEDKDEYT  76
            LW+AADKLR ++DAAEYK+V LGLIFLKY+SDSFE  YE LK +    + AD ED+DEY 
Sbjct  13   LWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQD----PYADEEDQDEYL  68

Query  77   AYNVFFVPELARWNYLISKAKLPEIGKMVDDAMELIEAGNPQLKGVLPKVYARQNLDATV  136
            A N+F VP  ARW+Y+  +AK PEIG+++D AM  IE  N  LKGVLPK YAR  LD   
Sbjct  69   AENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALDKEK  128

Query  137  LGELIDLIGNIALGDAKARSADVLGHVFEYFLGEFALAEGKQGGQFYTPKSIVSLLVNML  196
            LG++IDL+  + +GD+ +R  DVLG+V+EYF++ FA AEGK++G+FYTP SIV LLV+M+
Sbjct  129  LGDIIDLF-TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMI  187

Query  197  EPYKGRVFDPCCGSGGMFVQSEKFVEAHQGNIDDISIYGQESNQTTWRLAKMNLAIRGIN  256
            EPYKGR++DPCCGSGGMFVQSE+FVE HQG +DDI+IYGQESN TTW+LAKMNLAIRGI+
Sbjct  188  EPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRGID  247

Query  257  SEHVRWNNEGSFLNDAHKDLKSDFIIANPPFNVSDWSGEQLRGDARWQYGIPPAGNANFA  316
            ++   +N + +F ND HK+LK+D+I+ANPPFN SDW+ E+L +D RWQ+GIPP GNAN+A
Sbjct  248  NDLGERNAD-TFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYA  306

Query  317  WMQHFLYHLSPKGQAGVVLAKGALTSKSSGEGDIRAALVKDANVIDCIVNLPAKLFLNTQ  376
            W++H +  L+P+G AG VLA+G++++ + +E +IR  L+ + ++++CIV LP++LF +TQ
Sbjct  307  WIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLI-EQDLVECIVTLPGQLFYSTQ  365

Query  377  IPAALWFMRRDRHNSNQYRDRSKEILFIDARNLGHLINRRTKVLSDDDIKTIADTYHNWR  436
            IP  LWF+  ++ ++ + ++R +EILFIDAR++GH+++R  K +SD+DI+ +A+TYH WR
Sbjct  366  IPVCLWFISNNKGQNGK-KERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWR  424

Query  437  NKGGD-YEDVAGFCASVDIAEVAKLDYVLTPGRYVGLAdeeddfdfKERFTALKAEFEAQ  495
               +  YED+AGFC   ++ EV + +Y+LTPGRYVGLA   D  +  E F      + ++
Sbjct  425  GTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLA---DVEEDEEPFEQKMERITSE  481

Query  496  LEEEARLNRAIVDNLAKVV  514
            L E+   ++ + D++ K +
Sbjct  482  LSEQFAKSKELEDQIRKSL  500

152) CJA_3640 in NC_010995


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  465 bits (1752),  Expect = 3e-132, Method: Compositional matrix adjust.
 Identities = 282/504 (56%), Positives = 383/504 (76%), Gaps = 13/504 (2%)

Query  15   LEKQLWKAADKLRKNIDAAEYKHVVLGLIFLKYISDSFEELHIKLKKGKGDYVGADPEDK  74
            +E +LW+AADKLR ++DAAEYK+V LGLIFLKY+SDSFEE    LK++   Y  AD ED+
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDP--Y--ADEEDQ  64

Query  75   DEYKAENIFFVPRKARWSFLLGKAKQPDIGLHVDAAMDAIEKENPSLKGVLPKVYARQNL  134
            DEY AENIF VP+ ARW ++ ++AK+P+IG  +D AM AIE+EN SLKGVLPK YAR  L
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  135  DPTSLGGLIDLVSNIALGDAKARSADVLGHVFEYFLGEFALAEGKQGGQFYTPRSIVELL  194
            D   LG++IDL + + +GD+ +R  DVLG+V+EYF++ FA AEGK++G+FYTP SIV LL
Sbjct  125  DKEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL  183

Query  195  VAMLEPYKGRVFDPCCGSGGMFVQSEKFVEEHQGRVNDISIYGQESNQTTWRLAKMNLAI  254
            V M+EPYKGR++DPCCGSGGMFVQSE+FVE HQGR++DI+IYGQESN TTW+LAKMNLAI
Sbjct  184  VEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAI  243

Query  255  RGIDASQVKWNNEGSFLNDAHKDVKADYIIANPPFNVSDWSGELLRTDGRWKYGPPPPLG  314
            RGID     +N + +F ND HK++KADYI+ANPPFN SDW+ E L  D RW++G PP  G
Sbjct  244  RGIDNDLGERNAD-TFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPK-G  301

Query  315  NANFAWLQHFIYHLAPKGKAGVVLAKGALTSKTSGEGEIRKALIAEGNLIDCIVNLPAKL  374
            NAN+AW++H I  LAP+G AG VLA+G++++   +E EIRK LI + +L++CIV LP++L
Sbjct  302  NANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQ-DLVECIVTLPGQL  360

Query  375  FLNTQIPAALWFMNRArgssskssghprksEILFIDARNLGHLINRRTRELSHDDINKIA  434
            F +TQIP  LWF++      ++++   R +EILFIDAR++GH+++R  +E+S++DI+K+A
Sbjct  361  FYSTQIPVCLWFISNN---KGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVA  417

Query  435  GVYHNWR-TGEGEYEDVKGFCASVSLERVAELDYVLTPGRYVGLPE-EEDDFNFAERFAA  492
              YH WR T +  YED+ GFC   +LE V + +Y+LTPGRYVGL++ EED+  F ++   
Sbjct  418  QTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMER  477

Query  493  LKAEFEAQLKEEAKLNKAIAKSLA  516
            + +E+  Q+     L+  I KSL 
Sbjct  478  ITSELSEQFAKSKELEDQIRKSLE  501

153) Arth_0988 in NC_008541


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  465 bits (1752),  Expect = 3e-132, Method: Compositional matrix adjust.
 Identities = 271/516 (53%), Positives = 391/516 (76%), Gaps = 22/516 (4%)

Query  12   LEQRLWDTADALRGNQEPSEYKHVVLGLVFLKYISDRFEERRRAIETSLSDPNSEEYIPN  71
            +E++LW++AD LRG+ +++EYK+V LGL+FLKY+SD FEE+   +     DP ++E    
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELK---QDPYADE----  61

Query  72   EARRSEFLEDRDEYASHNVFWVPELARWGYLQDNAKLPKIGQQLDQAMDLIEKENPIIRG  131
                    ED+DEY ++N+FWVP  ARW Y++DNAK P IGQ +D+AM  IE+EN  ++G
Sbjct  62   --------EDQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKG  113

Query  132  VLPRNYGREGLDKSRLGQLVDLIGSIGFTESDDHG-SDDVLGRVYEYFLGQFAGKETGKD  190
            VLP++Y+R +LDK +LG+++DL+    F  +D ++  +DVLGRVYEYF+++FA+ E GK+
Sbjct  114  VLPKEYARPALDKEKLGDIIDLFT---FKVGDTESRKQDVLGRVYEYFIAKFASAE-GKN  169

Query  191  AGAFYTPRSVVKTLVEMLEPFHGRVYDPACGSGGMFVQSAEFVTAHGGERTDISVYGQEF  250
            AG FYTP S+VK LVEM+EP+ GR+YDP CGSGGMFVQS  FV  H G   DI++YGQE 
Sbjct  170  AGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQES  229

Query  251  TDTTWKLAKMNLALRGIEADLGDRSADSFTQDLHRDLRADFIIANPPFNVSNWWNAKLAD  310
              TTWKLAKMNLA+RGI+ DLG+R+AD+F +DLH++L+AD+I+ANPPFN S+W + +L D
Sbjct  230  NPTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLD  289

Query  311  DPRWKYGTPPEGNANFAWVQHFLHHLSPKGTAGFVlsngslsskssgegeIRRKLVEADL  370
            D RW++G PP GNAN+AW++H +  L+P+GTAGFVL+NGS+S+ + +E EIR++L+E DL
Sbjct  290  DYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDL  349

Query  371  VDCIVAMPDKLFFNTGIPVSLWFISKERHGNGHRARQGEVLFIDASKLGRMENrrlrvld  430
            V+CIV++P++LF++T IPV LWFIS+++  NG + R+ E+LFIDA  +G+M + R     
Sbjct  350  VECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVS-RTLKEF  408

Query  431  ddrdIAKIAGAYHAWR-NHDGGYEDVPGFVVAATLEEIRQHDFVLTPGRYVGTKEAEADW  489
             D DI K+A +YHAWR  +D  YED++GF   A LEE+++++++LTPGRYVG  + E D 
Sbjct  409  SDEDIQKVAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDE  468

Query  490  EPVEDKIARLTGELYAEFERGRKLEEVVRERLGGLN  525
            EP E+K+ R+T+EL  +F +++ LE+ +R  L GL 
Sbjct  469  EPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLG  504

154) Franean1_3767 in NC_009921


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  465 bits (1752),  Expect = 3e-132, Method: Compositional matrix adjust.
 Identities = 271/545 (50%), Positives = 386/545 (71%), Gaps = 54/545 (9%)

Query  20   ETLWKTADKLRGSMDAAQYKDFVLVLIFLKYVSDAFAERREQIRQDVLADGIDESRAEEF  79
            E LW++ADKLRGSMDAA+YK+  L LIFLKYVSD+F E+ E+++QD  AD          
Sbjct  11   EKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADE---------  61

Query  80   LDDVDEYAGQGVFWVPGRARWEHIAANAKSAGIGELLNAAMDAVMKTNPALTGVLPRIFN  139
             +D DEY ++ +FWVP  ARW+ I  NAK + IG++++ AM A+ + N +L GVLP+ + 
Sbjct  62   -EDQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYA  120

Query  140  GEGVDQHRLGELVDLLGDARFTGHRATERPPSTPTGEDGALFGESAAGVPTEAATRPARD  199
              ++D+++LG+++DL+    F    +  R                             +D
Sbjct  121  RPALDKEKLGDIIDLFT---FKVGDTESRK----------------------------QD  149

Query  200  VLGEVYEYFLERFARAEGKRGGEFYTPASVVRLLVEVLEPYEGRVYDPCCGSGGMFVQAE  259
            VLG VYEYF+ +FA AEGK +GEFYTP+S+V+LLVE++EPY GR+YDPCCGSGGMFVQ+E
Sbjct  150  VLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSE  209

Query  260  KFVVAHRGLTHSGDIAVYGQESNERTWRLAKMNLAIHGITGDLSARWDDTFRNDRHPDLR  319
            +FV  H+G  + +DIA+YGQESN  TW+LAKMNLAI+GI  DL+ R  DTF+ND H +L+
Sbjct  210  RFVEKHQG--RLDDIAIYGQESNPTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLK  267

Query  320  ADFILANPPFNMSDWA--RTVDDQRWRYGTPPTGNANFAWLQHIIAKLGSRGTAGVVMAN  377
            AD+ILANPPFN SDW+  R +DD RW++G PP GNAN+AW++H+I+KL++ GTAG V+AN
Sbjct  268  ADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLAN  327

Query  378  GSMSSKQSGEGEIRAALVEADLVACMIALPPQLFRTTQIPACLWFFAKDKGQLGARWLAE  437
            GSMS+   +E EIR  L+E DLV C+++LP QLF +TQIP CLWF++++KGQ G +   E
Sbjct  328  GSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKK---E  384

Query  438  RRGETLFIDARDMGTMIDRTERILTDGDLEKITDTYRAWRGAKSARDKGLAYENIPGFCY  497
            R  E LFIDAR++G M+ RT + ++D D++K+++TY+AWRG++       +YE+I+GFC 
Sbjct  385  RENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRGTNDK-----PYEDIAGFCK  439

Query  498  SASTEEIRTHDHVLTPGRYVGAAEADISNDEPMAEKIERLAKELFIHFEESARLEKEVRS  557
             A+ EE++ ++ +LTPGRYVG A+ +  ++EP  +K+ER++ EL  +F  S  LE ++R 
Sbjct  440  VANLEEVKNNEYILTPGRYVGLADVE-EDEEPFEQKMERITSELSEQFAKSKELEDQIRK  498

Query  558  QLERL  562
             LE L
Sbjct  499  SLEGL  503

155) hsdM in NC_022362


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  464 bits (1750),  Expect = 3e-132, Method: Compositional matrix adjust.
 Identities = 271/499 (55%), Positives = 378/499 (76%), Gaps = 12/499 (2%)

Query  7    IKLEDALWKSADKLRKNIDAAEYKHIVLGLIFLRYISDSFMQKYEELLKEQDDGADPEDA  66
            I +E+ LW++ADKLR ++DAAEYK++ LGLIFL+Y+SDSF +KYEEL   QD  AD ED 
Sbjct  7    IGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL--KQDPYADEEDQ  64

Query  67   DEYLADNIFFVPEKSRYNYIRDNAKNPKIGKMLDEAMDEIEKHNDTLKGVLPKVYAKDNL  126
            DEYLA+NIF VP  +R +YI DNAK+P IG+++D AM  IE++N++LKGVLPK YA+  L
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  127  DSKCLGELIDLIG-NIAFDTGKSTDVLGHVFEYFLGEFALAEGKQGGQFYTPKCVVELLV  185
            D   LG++IDL+  +++   ++  DVLG+V+EYF++ FA AEGK++G+FYTP  +V LLV
Sbjct  125  DKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLV  184

Query  186  TMLEPYKGRVFDPCCGSGGMFVQSEEFVKSHQGRLDDISIYGQESNQTTYKLAKMNLAIR  245
             M+EPYKGR++DPCCGSGGMFVQSE FV  HQGRLDDI+IYGQESN TT KLAKMNLAIR
Sbjct  185  EMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIR  244

Query  246  KIESSQVIWNNEGSFLNDAHKDLKADFIIANPPFNDSDWSGELLENDGRWKYGVPPASNA  305
             I++    +N + +F ND HK+LKAD+I+ANPPFN SDW+ E L +D RW++G+PP +NA
Sbjct  245  GIDNDLGERNAD-TFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNA  303

Query  306  NYAWIQHFLYHLSPNGGVAGFVLAKGALTSNTTNEAAIRKALIEDDLIDCIVNLPAKLFL  365
            NYAWI+H +  L+PN G AGFVLA+G+++++  +E  IRK LIE+DL++CIV LP++LF 
Sbjct  304  NYAWIEHMISKLAPN-GTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFY  362

Query  366  NTGIPASLWFIRRQKLPKTVK----KTLFIDARDLGTRINRRNKTLNKDDINQIANIYKA  421
            +T IP  LWFI  +K  +  K      LFIDAR++G  ++R  K ++ +DI+++A+ Y A
Sbjct  363  STQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHA  422

Query  422  WKNGTD--YEDIKGFCKSVSIDEIRELSYVLTPGRYVGLADSDDEFD-FDTRFNELLAKL  478
            W+   D  YEDI GFCK  +++E+++  Y+LTPGRYVGLAD +++ + F+ + + + + L
Sbjct  423  WRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSEL  482

Query  479  KSQIKTEQELSEIILKNLE  497
              Q+   +EL + I K+LE
Sbjct  483  SEQFAKSKELEDQIRKSLE  501

156) hsdM in NC_022352


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  464 bits (1750),  Expect = 3e-132, Method: Compositional matrix adjust.
 Identities = 271/499 (55%), Positives = 378/499 (76%), Gaps = 12/499 (2%)

Query  7    IKLEDALWKSADKLRKNIDAAEYKHIVLGLIFLRYISDSFMQKYEELLKEQDDGADPEDA  66
            I +E+ LW++ADKLR ++DAAEYK++ LGLIFL+Y+SDSF +KYEEL   QD  AD ED 
Sbjct  7    IGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL--KQDPYADEEDQ  64

Query  67   DEYLADNIFFVPEKSRYNYIRDNAKNPKIGKMLDEAMDEIEKHNDTLKGVLPKVYAKDNL  126
            DEYLA+NIF VP  +R +YI DNAK+P IG+++D AM  IE++N++LKGVLPK YA+  L
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  127  DSKCLGELIDLIG-NIAFDTGKSTDVLGHVFEYFLGEFALAEGKQGGQFYTPKCVVELLV  185
            D   LG++IDL+  +++   ++  DVLG+V+EYF++ FA AEGK++G+FYTP  +V LLV
Sbjct  125  DKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLV  184

Query  186  TMLEPYKGRVFDPCCGSGGMFVQSEEFVKSHQGRLDDISIYGQESNQTTYKLAKMNLAIR  245
             M+EPYKGR++DPCCGSGGMFVQSE FV  HQGRLDDI+IYGQESN TT KLAKMNLAIR
Sbjct  185  EMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIR  244

Query  246  KIESSQVIWNNEGSFLNDAHKDLKADFIIANPPFNDSDWSGELLENDGRWKYGVPPASNA  305
             I++    +N + +F ND HK+LKAD+I+ANPPFN SDW+ E L +D RW++G+PP +NA
Sbjct  245  GIDNDLGERNAD-TFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNA  303

Query  306  NYAWIQHFLYHLSPNGGVAGFVLAKGALTSNTTNEAAIRKALIEDDLIDCIVNLPAKLFL  365
            NYAWI+H +  L+PN G AGFVLA+G+++++  +E  IRK LIE+DL++CIV LP++LF 
Sbjct  304  NYAWIEHMISKLAPN-GTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFY  362

Query  366  NTGIPASLWFIRRQKLPKTVK----KTLFIDARDLGTRINRRNKTLNKDDINQIANIYKA  421
            +T IP  LWFI  +K  +  K      LFIDAR++G  ++R  K ++ +DI+++A+ Y A
Sbjct  363  STQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHA  422

Query  422  WKNGTD--YEDIKGFCKSVSIDEIRELSYVLTPGRYVGLADSDDEFD-FDTRFNELLAKL  478
            W+   D  YEDI GFCK  +++E+++  Y+LTPGRYVGLAD +++ + F+ + + + + L
Sbjct  423  WRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSEL  482

Query  479  KSQIKTEQELSEIILKNLE  497
              Q+   +EL + I K+LE
Sbjct  483  SEQFAKSKELEDQIRKSLE  501

157) hsdM in NC_022351


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  464 bits (1750),  Expect = 3e-132, Method: Compositional matrix adjust.
 Identities = 271/499 (55%), Positives = 378/499 (76%), Gaps = 12/499 (2%)

Query  7    IKLEDALWKSADKLRKNIDAAEYKHIVLGLIFLRYISDSFMQKYEELLKEQDDGADPEDA  66
            I +E+ LW++ADKLR ++DAAEYK++ LGLIFL+Y+SDSF +KYEEL   QD  AD ED 
Sbjct  7    IGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL--KQDPYADEEDQ  64

Query  67   DEYLADNIFFVPEKSRYNYIRDNAKNPKIGKMLDEAMDEIEKHNDTLKGVLPKVYAKDNL  126
            DEYLA+NIF VP  +R +YI DNAK+P IG+++D AM  IE++N++LKGVLPK YA+  L
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  127  DSKCLGELIDLIG-NIAFDTGKSTDVLGHVFEYFLGEFALAEGKQGGQFYTPKCVVELLV  185
            D   LG++IDL+  +++   ++  DVLG+V+EYF++ FA AEGK++G+FYTP  +V LLV
Sbjct  125  DKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLV  184

Query  186  TMLEPYKGRVFDPCCGSGGMFVQSEEFVKSHQGRLDDISIYGQESNQTTYKLAKMNLAIR  245
             M+EPYKGR++DPCCGSGGMFVQSE FV  HQGRLDDI+IYGQESN TT KLAKMNLAIR
Sbjct  185  EMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIR  244

Query  246  KIESSQVIWNNEGSFLNDAHKDLKADFIIANPPFNDSDWSGELLENDGRWKYGVPPASNA  305
             I++    +N + +F ND HK+LKAD+I+ANPPFN SDW+ E L +D RW++G+PP +NA
Sbjct  245  GIDNDLGERNAD-TFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNA  303

Query  306  NYAWIQHFLYHLSPNGGVAGFVLAKGALTSNTTNEAAIRKALIEDDLIDCIVNLPAKLFL  365
            NYAWI+H +  L+PN G AGFVLA+G+++++  +E  IRK LIE+DL++CIV LP++LF 
Sbjct  304  NYAWIEHMISKLAPN-GTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFY  362

Query  366  NTGIPASLWFIRRQKLPKTVK----KTLFIDARDLGTRINRRNKTLNKDDINQIANIYKA  421
            +T IP  LWFI  +K  +  K      LFIDAR++G  ++R  K ++ +DI+++A+ Y A
Sbjct  363  STQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHA  422

Query  422  WKNGTD--YEDIKGFCKSVSIDEIRELSYVLTPGRYVGLADSDDEFD-FDTRFNELLAKL  478
            W+   D  YEDI GFCK  +++E+++  Y+LTPGRYVGLAD +++ + F+ + + + + L
Sbjct  423  WRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSEL  482

Query  479  KSQIKTEQELSEIILKNLE  497
              Q+   +EL + I K+LE
Sbjct  483  SEQFAKSKELEDQIRKSLE  501

158) hsdM in NC_022353


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  464 bits (1750),  Expect = 3e-132, Method: Compositional matrix adjust.
 Identities = 271/499 (55%), Positives = 378/499 (76%), Gaps = 12/499 (2%)

Query  7    IKLEDALWKSADKLRKNIDAAEYKHIVLGLIFLRYISDSFMQKYEELLKEQDDGADPEDA  66
            I +E+ LW++ADKLR ++DAAEYK++ LGLIFL+Y+SDSF +KYEEL   QD  AD ED 
Sbjct  7    IGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL--KQDPYADEEDQ  64

Query  67   DEYLADNIFFVPEKSRYNYIRDNAKNPKIGKMLDEAMDEIEKHNDTLKGVLPKVYAKDNL  126
            DEYLA+NIF VP  +R +YI DNAK+P IG+++D AM  IE++N++LKGVLPK YA+  L
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  127  DSKCLGELIDLIG-NIAFDTGKSTDVLGHVFEYFLGEFALAEGKQGGQFYTPKCVVELLV  185
            D   LG++IDL+  +++   ++  DVLG+V+EYF++ FA AEGK++G+FYTP  +V LLV
Sbjct  125  DKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLV  184

Query  186  TMLEPYKGRVFDPCCGSGGMFVQSEEFVKSHQGRLDDISIYGQESNQTTYKLAKMNLAIR  245
             M+EPYKGR++DPCCGSGGMFVQSE FV  HQGRLDDI+IYGQESN TT KLAKMNLAIR
Sbjct  185  EMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIR  244

Query  246  KIESSQVIWNNEGSFLNDAHKDLKADFIIANPPFNDSDWSGELLENDGRWKYGVPPASNA  305
             I++    +N + +F ND HK+LKAD+I+ANPPFN SDW+ E L +D RW++G+PP +NA
Sbjct  245  GIDNDLGERNAD-TFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNA  303

Query  306  NYAWIQHFLYHLSPNGGVAGFVLAKGALTSNTTNEAAIRKALIEDDLIDCIVNLPAKLFL  365
            NYAWI+H +  L+PN G AGFVLA+G+++++  +E  IRK LIE+DL++CIV LP++LF 
Sbjct  304  NYAWIEHMISKLAPN-GTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFY  362

Query  366  NTGIPASLWFIRRQKLPKTVK----KTLFIDARDLGTRINRRNKTLNKDDINQIANIYKA  421
            +T IP  LWFI  +K  +  K      LFIDAR++G  ++R  K ++ +DI+++A+ Y A
Sbjct  363  STQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHA  422

Query  422  WKNGTD--YEDIKGFCKSVSIDEIRELSYVLTPGRYVGLADSDDEFD-FDTRFNELLAKL  478
            W+   D  YEDI GFCK  +++E+++  Y+LTPGRYVGLAD +++ + F+ + + + + L
Sbjct  423  WRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSEL  482

Query  479  KSQIKTEQELSEIILKNLE  497
              Q+   +EL + I K+LE
Sbjct  483  SEQFAKSKELEDQIRKSLE  501

159) CJJ81176_1539 in NC_008787


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  464 bits (1750),  Expect = 3e-132, Method: Compositional matrix adjust.
 Identities = 271/499 (55%), Positives = 378/499 (76%), Gaps = 12/499 (2%)

Query  7    IKLEDALWKSADKLRKNIDAAEYKHIVLGLIFLRYISDSFMQKYEELLKEQDDGADPEDA  66
            I +E+ LW++ADKLR ++DAAEYK++ LGLIFL+Y+SDSF +KYEEL   QD  AD ED 
Sbjct  7    IGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL--KQDPYADEEDQ  64

Query  67   DEYLADNIFFVPEKSRYNYIRDNAKNPKIGKMLDEAMDEIEKHNDTLKGVLPKVYAKDNL  126
            DEYLA+NIF VP  +R +YI DNAK+P IG+++D AM  IE++N++LKGVLPK YA+  L
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  127  DSKCLGELIDLIG-NIAFDTGKSTDVLGHVFEYFLGEFALAEGKQGGQFYTPKCVVELLV  185
            D   LG++IDL+  +++   ++  DVLG+V+EYF++ FA AEGK++G+FYTP  +V LLV
Sbjct  125  DKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLV  184

Query  186  TMLEPYKGRVFDPCCGSGGMFVQSEEFVKSHQGRLDDISIYGQESNQTTYKLAKMNLAIR  245
             M+EPYKGR++DPCCGSGGMFVQSE FV  HQGRLDDI+IYGQESN TT KLAKMNLAIR
Sbjct  185  EMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIR  244

Query  246  KIESSQVIWNNEGSFLNDAHKDLKADFIIANPPFNDSDWSGELLENDGRWKYGVPPASNA  305
             I++    +N + +F ND HK+LKAD+I+ANPPFN SDW+ E L +D RW++G+PP +NA
Sbjct  245  GIDNDLGERNAD-TFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNA  303

Query  306  NYAWIQHFLYHLSPNGGVAGFVLAKGALTSNTTNEAAIRKALIEDDLIDCIVNLPAKLFL  365
            NYAWI+H +  L+PN G AGFVLA+G+++++  +E  IRK LIE+DL++CIV LP++LF 
Sbjct  304  NYAWIEHMISKLAPN-GTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFY  362

Query  366  NTGIPASLWFIRRQKLPKTVK----KTLFIDARDLGTRINRRNKTLNKDDINQIANIYKA  421
            +T IP  LWFI  +K  +  K      LFIDAR++G  ++R  K ++ +DI+++A+ Y A
Sbjct  363  STQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHA  422

Query  422  WKNGTD--YEDIKGFCKSVSIDEIRELSYVLTPGRYVGLADSDDEFD-FDTRFNELLAKL  478
            W+   D  YEDI GFCK  +++E+++  Y+LTPGRYVGLAD +++ + F+ + + + + L
Sbjct  423  WRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSEL  482

Query  479  KSQIKTEQELSEIILKNLE  497
              Q+   +EL + I K+LE
Sbjct  483  SEQFAKSKELEDQIRKSLE  501

160) hsdM in NC_017279


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  464 bits (1750),  Expect = 3e-132, Method: Compositional matrix adjust.
 Identities = 271/499 (55%), Positives = 378/499 (76%), Gaps = 12/499 (2%)

Query  7    IKLEDALWKSADKLRKNIDAAEYKHIVLGLIFLRYISDSFMQKYEELLKEQDDGADPEDA  66
            I +E+ LW++ADKLR ++DAAEYK++ LGLIFL+Y+SDSF +KYEEL   QD  AD ED 
Sbjct  7    IGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL--KQDPYADEEDQ  64

Query  67   DEYLADNIFFVPEKSRYNYIRDNAKNPKIGKMLDEAMDEIEKHNDTLKGVLPKVYAKDNL  126
            DEYLA+NIF VP  +R +YI DNAK+P IG+++D AM  IE++N++LKGVLPK YA+  L
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  127  DSKCLGELIDLIG-NIAFDTGKSTDVLGHVFEYFLGEFALAEGKQGGQFYTPKCVVELLV  185
            D   LG++IDL+  +++   ++  DVLG+V+EYF++ FA AEGK++G+FYTP  +V LLV
Sbjct  125  DKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLV  184

Query  186  TMLEPYKGRVFDPCCGSGGMFVQSEEFVKSHQGRLDDISIYGQESNQTTYKLAKMNLAIR  245
             M+EPYKGR++DPCCGSGGMFVQSE FV  HQGRLDDI+IYGQESN TT KLAKMNLAIR
Sbjct  185  EMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIR  244

Query  246  KIESSQVIWNNEGSFLNDAHKDLKADFIIANPPFNDSDWSGELLENDGRWKYGVPPASNA  305
             I++    +N + +F ND HK+LKAD+I+ANPPFN SDW+ E L +D RW++G+PP +NA
Sbjct  245  GIDNDLGERNAD-TFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNA  303

Query  306  NYAWIQHFLYHLSPNGGVAGFVLAKGALTSNTTNEAAIRKALIEDDLIDCIVNLPAKLFL  365
            NYAWI+H +  L+PN G AGFVLA+G+++++  +E  IRK LIE+DL++CIV LP++LF 
Sbjct  304  NYAWIEHMISKLAPN-GTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFY  362

Query  366  NTGIPASLWFIRRQKLPKTVK----KTLFIDARDLGTRINRRNKTLNKDDINQIANIYKA  421
            +T IP  LWFI  +K  +  K      LFIDAR++G  ++R  K ++ +DI+++A+ Y A
Sbjct  363  STQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHA  422

Query  422  WKNGTD--YEDIKGFCKSVSIDEIRELSYVLTPGRYVGLADSDDEFD-FDTRFNELLAKL  478
            W+   D  YEDI GFCK  +++E+++  Y+LTPGRYVGLAD +++ + F+ + + + + L
Sbjct  423  WRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSEL  482

Query  479  KSQIKTEQELSEIILKNLE  497
              Q+   +EL + I K+LE
Sbjct  483  SEQFAKSKELEDQIRKSLE  501

161) hsdM in NC_002163


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  464 bits (1750),  Expect = 3e-132, Method: Compositional matrix adjust.
 Identities = 271/499 (55%), Positives = 378/499 (76%), Gaps = 12/499 (2%)

Query  7    IKLEDALWKSADKLRKNIDAAEYKHIVLGLIFLRYISDSFMQKYEELLKEQDDGADPEDA  66
            I +E+ LW++ADKLR ++DAAEYK++ LGLIFL+Y+SDSF +KYEEL   QD  AD ED 
Sbjct  7    IGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL--KQDPYADEEDQ  64

Query  67   DEYLADNIFFVPEKSRYNYIRDNAKNPKIGKMLDEAMDEIEKHNDTLKGVLPKVYAKDNL  126
            DEYLA+NIF VP  +R +YI DNAK+P IG+++D AM  IE++N++LKGVLPK YA+  L
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  127  DSKCLGELIDLIG-NIAFDTGKSTDVLGHVFEYFLGEFALAEGKQGGQFYTPKCVVELLV  185
            D   LG++IDL+  +++   ++  DVLG+V+EYF++ FA AEGK++G+FYTP  +V LLV
Sbjct  125  DKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLV  184

Query  186  TMLEPYKGRVFDPCCGSGGMFVQSEEFVKSHQGRLDDISIYGQESNQTTYKLAKMNLAIR  245
             M+EPYKGR++DPCCGSGGMFVQSE FV  HQGRLDDI+IYGQESN TT KLAKMNLAIR
Sbjct  185  EMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIR  244

Query  246  KIESSQVIWNNEGSFLNDAHKDLKADFIIANPPFNDSDWSGELLENDGRWKYGVPPASNA  305
             I++    +N + +F ND HK+LKAD+I+ANPPFN SDW+ E L +D RW++G+PP +NA
Sbjct  245  GIDNDLGERNAD-TFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNA  303

Query  306  NYAWIQHFLYHLSPNGGVAGFVLAKGALTSNTTNEAAIRKALIEDDLIDCIVNLPAKLFL  365
            NYAWI+H +  L+PN G AGFVLA+G+++++  +E  IRK LIE+DL++CIV LP++LF 
Sbjct  304  NYAWIEHMISKLAPN-GTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFY  362

Query  366  NTGIPASLWFIRRQKLPKTVK----KTLFIDARDLGTRINRRNKTLNKDDINQIANIYKA  421
            +T IP  LWFI  +K  +  K      LFIDAR++G  ++R  K ++ +DI+++A+ Y A
Sbjct  363  STQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHA  422

Query  422  WKNGTD--YEDIKGFCKSVSIDEIRELSYVLTPGRYVGLADSDDEFD-FDTRFNELLAKL  478
            W+   D  YEDI GFCK  +++E+++  Y+LTPGRYVGLAD +++ + F+ + + + + L
Sbjct  423  WRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSEL  482

Query  479  KSQIKTEQELSEIILKNLE  497
              Q+   +EL + I K+LE
Sbjct  483  SEQFAKSKELEDQIRKSLE  501

162) hsdM in NC_018521


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  464 bits (1750),  Expect = 3e-132, Method: Compositional matrix adjust.
 Identities = 271/499 (55%), Positives = 378/499 (76%), Gaps = 12/499 (2%)

Query  7    IKLEDALWKSADKLRKNIDAAEYKHIVLGLIFLRYISDSFMQKYEELLKEQDDGADPEDA  66
            I +E+ LW++ADKLR ++DAAEYK++ LGLIFL+Y+SDSF +KYEEL   QD  AD ED 
Sbjct  7    IGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL--KQDPYADEEDQ  64

Query  67   DEYLADNIFFVPEKSRYNYIRDNAKNPKIGKMLDEAMDEIEKHNDTLKGVLPKVYAKDNL  126
            DEYLA+NIF VP  +R +YI DNAK+P IG+++D AM  IE++N++LKGVLPK YA+  L
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  127  DSKCLGELIDLIG-NIAFDTGKSTDVLGHVFEYFLGEFALAEGKQGGQFYTPKCVVELLV  185
            D   LG++IDL+  +++   ++  DVLG+V+EYF++ FA AEGK++G+FYTP  +V LLV
Sbjct  125  DKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLV  184

Query  186  TMLEPYKGRVFDPCCGSGGMFVQSEEFVKSHQGRLDDISIYGQESNQTTYKLAKMNLAIR  245
             M+EPYKGR++DPCCGSGGMFVQSE FV  HQGRLDDI+IYGQESN TT KLAKMNLAIR
Sbjct  185  EMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIR  244

Query  246  KIESSQVIWNNEGSFLNDAHKDLKADFIIANPPFNDSDWSGELLENDGRWKYGVPPASNA  305
             I++    +N + +F ND HK+LKAD+I+ANPPFN SDW+ E L +D RW++G+PP +NA
Sbjct  245  GIDNDLGERNAD-TFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNA  303

Query  306  NYAWIQHFLYHLSPNGGVAGFVLAKGALTSNTTNEAAIRKALIEDDLIDCIVNLPAKLFL  365
            NYAWI+H +  L+PN G AGFVLA+G+++++  +E  IRK LIE+DL++CIV LP++LF 
Sbjct  304  NYAWIEHMISKLAPN-GTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFY  362

Query  366  NTGIPASLWFIRRQKLPKTVK----KTLFIDARDLGTRINRRNKTLNKDDINQIANIYKA  421
            +T IP  LWFI  +K  +  K      LFIDAR++G  ++R  K ++ +DI+++A+ Y A
Sbjct  363  STQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHA  422

Query  422  WKNGTD--YEDIKGFCKSVSIDEIRELSYVLTPGRYVGLADSDDEFD-FDTRFNELLAKL  478
            W+   D  YEDI GFCK  +++E+++  Y+LTPGRYVGLAD +++ + F+ + + + + L
Sbjct  423  WRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSEL  482

Query  479  KSQIKTEQELSEIILKNLE  497
              Q+   +EL + I K+LE
Sbjct  483  SEQFAKSKELEDQIRKSLE  501

163) A911_07480 in NC_018709


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  464 bits (1750),  Expect = 3e-132, Method: Compositional matrix adjust.
 Identities = 271/499 (55%), Positives = 378/499 (76%), Gaps = 12/499 (2%)

Query  7    IKLEDALWKSADKLRKNIDAAEYKHIVLGLIFLRYISDSFMQKYEELLKEQDDGADPEDA  66
            I +E+ LW++ADKLR ++DAAEYK++ LGLIFL+Y+SDSF +KYEEL   QD  AD ED 
Sbjct  7    IGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL--KQDPYADEEDQ  64

Query  67   DEYLADNIFFVPEKSRYNYIRDNAKNPKIGKMLDEAMDEIEKHNDTLKGVLPKVYAKDNL  126
            DEYLA+NIF VP  +R +YI DNAK+P IG+++D AM  IE++N++LKGVLPK YA+  L
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  127  DSKCLGELIDLIG-NIAFDTGKSTDVLGHVFEYFLGEFALAEGKQGGQFYTPKCVVELLV  185
            D   LG++IDL+  +++   ++  DVLG+V+EYF++ FA AEGK++G+FYTP  +V LLV
Sbjct  125  DKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLV  184

Query  186  TMLEPYKGRVFDPCCGSGGMFVQSEEFVKSHQGRLDDISIYGQESNQTTYKLAKMNLAIR  245
             M+EPYKGR++DPCCGSGGMFVQSE FV  HQGRLDDI+IYGQESN TT KLAKMNLAIR
Sbjct  185  EMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIR  244

Query  246  KIESSQVIWNNEGSFLNDAHKDLKADFIIANPPFNDSDWSGELLENDGRWKYGVPPASNA  305
             I++    +N + +F ND HK+LKAD+I+ANPPFN SDW+ E L +D RW++G+PP +NA
Sbjct  245  GIDNDLGERNAD-TFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNA  303

Query  306  NYAWIQHFLYHLSPNGGVAGFVLAKGALTSNTTNEAAIRKALIEDDLIDCIVNLPAKLFL  365
            NYAWI+H +  L+PN G AGFVLA+G+++++  +E  IRK LIE+DL++CIV LP++LF 
Sbjct  304  NYAWIEHMISKLAPN-GTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFY  362

Query  366  NTGIPASLWFIRRQKLPKTVK----KTLFIDARDLGTRINRRNKTLNKDDINQIANIYKA  421
            +T IP  LWFI  +K  +  K      LFIDAR++G  ++R  K ++ +DI+++A+ Y A
Sbjct  363  STQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHA  422

Query  422  WKNGTD--YEDIKGFCKSVSIDEIRELSYVLTPGRYVGLADSDDEFD-FDTRFNELLAKL  478
            W+   D  YEDI GFCK  +++E+++  Y+LTPGRYVGLAD +++ + F+ + + + + L
Sbjct  423  WRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSEL  482

Query  479  KSQIKTEQELSEIILKNLE  497
              Q+   +EL + I K+LE
Sbjct  483  SEQFAKSKELEDQIRKSLE  501

164) Rfer_4006 in NC_007908


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  464 bits (1747),  Expect = 7e-132, Method: Compositional matrix adjust.
 Identities = 267/461 (58%), Positives = 358/461 (78%), Gaps = 10/461 (2%)

Query  15   LEKQLWKAADKLRKNIDAAEYKHVVLGLIFLKYISDSFEELFTKLQGGAGDYAGADPEDK  74
            +E +LW+AADKLR ++DAAEYK+V LGLIFLKY+SDSFEE +  L+ ++  YA  D ED+
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDP--YA--DEEDQ  64

Query  75   DEYKAENVFFVPPQARWSFLLGKAKQPDVGSHVDAAMDAIEKENPSLKGVLPKVFARQNL  134
            DEY AEN+F VP +ARW ++ ++AK+P++G  +D AM AIE+EN SLKGVLPK +AR  L
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  135  DPASLGGLIDLVGNIALGDAKARSADVLGHVFEYFLGEFALAEGKQGGQFYTPRSIVELL  194
            D   LG++IDL   + +GD+ +R  DVLG+V+EYF++ FA AEGK++G+FYTP SIV LL
Sbjct  125  DKEKLGDIIDLF-TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL  183

Query  195  VVMLEPYKGRVFDPCCGSGGMFVQSEKFVTEHQGRINDISIFGQESNQTTWRLAKMNLAI  254
            V M+EPYKGR++DPCCGSGGMFVQSE+FV  HQGR++DI+I+GQESN TTW+LAKMNLAI
Sbjct  184  VEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAI  243

Query  255  RGIDASQVKWNNEGSFLNDAHKDVKADFIIANPPFNVSDWNGELLRKDGRWQYGVPPTGN  314
            RGID     +N + +F ND HK++KAD+I+ANPPFN SDW  E L  D RWQ+G+PP GN
Sbjct  244  RGIDNDLGERNAD-TFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGN  302

Query  315  ANFAWLQHFNHHLAPNGRAGVVLAKGALTSKSSGEGDIRKAMVVDGNLIDCIVNLPAKLF  374
            AN+AW++H    LAPNG AG VLA+G++++ + +E +IRK + ++ +L++CIV LP++LF
Sbjct  303  ANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNL-IEQDLVECIVTLPGQLF  361

Query  375  LNTQIPAGLWFM--NRARNNGHPRKGEILFIDARNLGHLINRRTRELSDEDIQKVASVYH  432
             +TQIP  LWF+  N+++N    R  EILFIDAR++GH+++R  +E+SDEDIQKVA  YH
Sbjct  362  YSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYH  421

Query  433  AWR-TGESEYADEKGFCASVPLARVAELDYVLTPGRYVGLP  472
            AWR T +  Y D  GFC    L  V + +Y+LTPGRYVGL+
Sbjct  422  AWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLA  462

165) Sros_7556 in NC_013595


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  463 bits (1746),  Expect = 8e-132, Method: Compositional matrix adjust.
 Identities = 273/532 (52%), Positives = 392/532 (74%), Gaps = 31/532 (5%)

Query  15   LSMSSTKEIQDILWKAADKLRGSMDAAQYKEFVLGLVFLKYVSDAFAERRATLAADPELA  74
            + + +T  +++ LW+AADKLRGSMDAA+YK+  LGL+FLKYVSD+F E+   L  DP   
Sbjct  1    MLLMATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYAD  60

Query  75   ELPEHRRAAFLEEKDEYTEANVFWVPPPARWDYISDNAQSAVDGVGKLLDDAMDAIMKEN  134
            E          E++DEY   N+FWVP  ARW+YI+DNA+ +   +G+++D AM AI +EN
Sbjct  61   E----------EDQDEYLAENIFWVPKEARWQYINDNAKKP--EIGQIIDKAMIAIENEN  108

Query  135  PTLTGVLPKIFNRDNVDKKRLKELVDLISDARF-TGHGARPAQDVLGETYEYFLERFARA  193
             +L GVLPK + R  +DK +L +++DL++   F  G+     QDVLG  YEYF+ +FA A
Sbjct  109  ESLKGVLPKEYARPALDKEKLGDIIDLFT---FKVGDTESRKQDVLGRVYEYFIAKFASA  165

Query  194  EGKRAGEFYTPASVVRLLVEILEPYEGRVYDPCCGSGGMFVQAGKFVTAHAGRDHTHDIA  253
            EGK AGEFYTP+S+V+LLVE++EPY GR+YDPCCGSGGMFVQ+ +FV  H GR   +DIA
Sbjct  166  EGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGR--LDDIA  223

Query  254  VYGQETNERTWRLAKMNLAIHGMDPKGVGDRWADTFDDDKLPDLKADFVMANPPFNLSDW  313
            +YGQE+N  TW+LAKMNLAI+G+D +++G+R ADTF++D   +LKAD+++ANPPFN SDW
Sbjct  224  IYGQESNPTTWKLAKMNLAIRGID-NDLGERNADTFHNDLHKGLKADYILANPPFNASDW  282

Query  314  ARN--VGDRRWMYGVPPQSNANYAWLQHIVFKLGERGSAGVVLANGSMASKQSGEGEIRT  371
            +++  ++D RW +G+PP++NANYAW++H++ KL+  G+AG VLANGSM++   +E EIR 
Sbjct  283  GQERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRK  342

Query  372  KLVQADLVACMVALPGNLFRTTAIPACLWFLTKDKTPQGAKALAERRGEVLFIDARNLGT  431
            +L++ DLV C+V+LPG+LF +T IP CLWF++++K  +G K   ER  E+LFIDAR++G 
Sbjct  343  NLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKK---ERENEILFIDAREIGH  399

Query  432  MVDRTERILTDEDLARIADTYHAWRGTRSARAKGLKYENVAGFCHSASLEEIREHDFVLT  491
            MV RT + ++DED+ ++A+TYHAWRGT         YE++AGFC  A+LEE+++++++LT
Sbjct  400  MVSRTLKEFSDEDIQKVAQTYHAWRGTNDKP-----YEDIAGFCKVANLEEVKNNEYILT  454

Query  492  PGRYVGateveedpdaepveeRVARLTKELFEHFEESARLEKVVREQLGGIN  543
            PGRYVG    + + D EP E+++ R+T EL E+F  S  LE  +R  L G+ 
Sbjct  455  PGRYVG--LADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLG  504

166) Sulba_2350 in NC_018002


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  462 bits (1742),  Expect = 1e-131, Method: Compositional matrix adjust.
 Identities = 262/506 (52%), Positives = 379/506 (75%), Gaps = 19/506 (3%)

Query  9    SMEETLWESANKLRGSVESSEYKHIVLGLIFLKFVSDTFEERREKLLAEGKEAFIDMVEF  68
            + EE LW++A+KLRGS++++EYK++ LGLIFLK+VSD+FEE+ E L    ++++ D  + 
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL---KQDPYADEEDQ  64

Query  69   --YTMDNVFYLPETSRWSYIKQNAKQDDIALKIDTALASIEKTNPSLKGALPDNYFSRLG  126
              Y  +N+F +P  +RW YI++NAK+ +I+  ID A+ +IE+ N SLKG LP +Y +R +
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEY-ARPA  123

Query  127  LDPSKLSSLIDTIN-NINTLEDKGHDVVGRVYEYFLGEFALAEGKLGGQFYTPKSIVNLI  185
            LD  KL+ +ID +  ++   E + +DV+GRVYEYF++ FA AEGK +G+FYTP SIV+L+
Sbjct  124  LDKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLL  183

Query  186  ANMIEPYKGKIYDPACGSGGMFVQSLKFIEAHKGNKKDISIYGQEFTATTYKLAKMNLAI  245
             +MIEPYKG+IYDP CGSGGMFVQS +F+E H+G   DI+IYGQE  +TT KLAKMNLAI
Sbjct  184  VEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAI  243

Query  246  RGISANLGAVPADSFFKDQHPDLKADYIMANPPFNQKEWRGVNELLDDPRWAGYEVPSAS  305
            RGI  +LG   AD+F +D H +LKADYI+ANPPFN  +W G + LLDD RW  + +P+ +
Sbjct  244  RGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDW-GQERLLDDYRWQ-FGIPPKG  301

Query  306  NANYGWILHMVSKLSENGIAGFVLAKGSLTSNSSNEGEIRKQLIENNLIDCIVNLPAKLF  365
            NANY+WI HM+SKL+ NG AGFVLA+GS+++++ +E EIRK+LIE++L++CIV LP++LF
Sbjct  302  NANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLF  361

Query  366  FNTQIPACLWFIKKNK-------KTNDILFIDARNIGHLINRRNKDFSEANIEQIASTYH  418
            ++TQIP CLWFI +NK       + N+ILFIDAR+IGH+++R  K+FS+ +I+++A TYH
Sbjct  362  YSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYH  421

Query  419  NWKV--EKHYEDVKGFCKSASVEEVRTLGYVLTPGRYVGLEDSEDEFD-FKERFESLHVK  475
             W+   +K YED+ GFCK A++EEV+   Y+LTPGRYVGL D E++ + F ++ E +   
Sbjct  422  AWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSE  481

Query  476  LQEQMKEEQSLNERILANLAKVNLAV  501
            L EQ    + L+++I  +L  +  +V
Sbjct  482  LSEQFAKSKELEDQIRKSLEGLGYGV  507

167) Metme_1963 in NC_015572


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  462 bits (1742),  Expect = 2e-131, Method: Compositional matrix adjust.
 Identities = 273/514 (54%), Positives = 382/514 (75%), Gaps = 26/514 (5%)

Query  8    TLWAAADKLRANMDAAEYKHLVLGLIFVKYISDTFAARRAELTR-RFTDESDEYFLHECD  66
             LW AADKLR++MDAAEYK++ LGLIF+KY+SD+F  +  EL +  ++DE D+       
Sbjct  12   KLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ-------  64

Query  67   DEMLAEELEDRDYYKEVNVFWVPETARWEALRAAAKQADIGKRIDDALAIIETENPKLKG  126
            DE LAE           N+FWVP  ARW+ +   AK+++IG+ ID A+  IE EN  LKG
Sbjct  65   DEYLAE-----------NIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKG  113

Query  127  ILDKRYARAHLPDGKLGELVDLVSTIGFGDDPGQARDVLGQVYEYFLGQFASAEGKKGGQ  186
            +L K YAR+ L   KLG+++DL  T+  GD  ++ +DVLG+VYEYF+++FASAEGK++G+
Sbjct  114  VLPKEYARPALDKEKLGDIIDLF-TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGE  172

Query  187  FYTPASIVKTLVAVLAPHHGKVYDPCCGSGGMFVQSEKFIEAHGGKLGDVSIYGQESNPT  246
            FYTP+SIVK LV ++ P  G++YDPCCGSGGMFVQSE+F+E H G+L+D++IYGQESNPT
Sbjct  173  FYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPT  232

Query  247  TWRLAAMNLAIRGIDFNLGREPSDTFTRNQHPDLRADFILANPPFNISDWWHGSLEGDPR  306
            TW+LA MNLAIRGID +LG   +DTF  + H +L+AD+ILANPPFN SDW +  L +D R
Sbjct  233  TWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYR  292

Query  307  WVYGTPPQGNANYAWLQHMLYQLKANGRAGIVLANGSMSSSQNSEGDIRKAMVDADVVEV  366
            W +G PP+GNANYAW++HM+ +L +NG AG+VLANGSMS+S + E +IRK +++ D+VE 
Sbjct  293  WQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVEC  352

Query  367  MIALPGQLFFNTQIPACLWFLAKQKTY-----RQGEMLFIDARKLGKMISRVQTEFTDEV  421
            +++LPGQLF++TQIP CLWF++++K       R+ E+LFIDAR +G M+SR   EF+DE 
Sbjct  353  IVTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDED  412

Query  422  IDRIAGTVAAWRGEAEAGEYQDTPGYCRSVTLAEIAEHGHVLTPGRYVGaeaveddddaf  481
            I+++A T  AWRG  +   Y+D +G+C+   L E+ ++  +LTPGRYVG   VE+D+++F
Sbjct  413  IQKVAQTYHAWRGTNDKP-YEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPF  471

Query  482  adKMQTLTEKLGEQMAKGAELDQLIRQKLGGLGY  515
             +KM+ +T  L+EQ AK+ EL++ IR+ L GLGY
Sbjct  472  EQKMERITSELSEQFAKSKELEDQIRKSLEGLGY  505

168) NAL212_2263 in NC_015222


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  462 bits (1740),  Expect = 2e-131, Method: Compositional matrix adjust.
 Identities = 282/540 (53%), Positives = 390/540 (73%), Gaps = 43/540 (7%)

Query  7    IKTEPLEKQLWKAACKLQKNIDAAEYKHVVLGLMFLKYISDAFEELHDRLEKGEGDLVGA  66
            + T  +E +LW+AA KL+ ++DAAEYK+V LGL+FLKY+SD+FEE  + L ++      A
Sbjct  4    MATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPY----A  59

Query  67   DPEDKDEYRAENVFFVPAESRWPHLVAHARQPDIGTHVDAAMDAIEKENPSLKGVLPKVY  126
            D ED+DEY AEN+F VP E+RW  +  +A++P+IG  +D AM AIE+EN SLKGVLPK Y
Sbjct  60   DEEDQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEY  119

Query  127  ARQNLDPTSLGELIDLIGNIALGDAKARSQDVLGHVFEYFLGEFALAEGKQGGQFYTPRS  186
            AR  LD   LG++IDL+  + +GD+ +R QDVLG+V+EYF++ FA AEGK++G+FYTP S
Sbjct  120  ARPALDKEKLGDIIDLF-TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSS  178

Query  187  IVELLVNMLEPYQGRVFDPCCGSGGMFVQSEKFVEEHQGRIDDISIYGQESNQTTWRLAK  246
            IV LLV+M+EPY+GR++DPCCGSGGMFVQSE+FVE HQGR+DDI+IYGQESN TTW+LAK
Sbjct  179  IVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAK  238

Query  247  MNLAIRGIDSSQVKWNNEGSFLNDAHKDLKADFIIANPPFNVSDWSGEQLRGDARWQYGT  306
            MNLAIRGID+    +N + +F ND HK+LKAD+I+ANPPFN SDW+ E+L +D RWQ+G 
Sbjct  239  MNLAIRGIDNDLGERNAD-TFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGI  297

Query  307  PPPGNANFAWLQHFIYHLSPTGIAGVVLAKGALTSKTSGEGDIRKRLITDGNLIDCIVNL  366
            PP GNAN+AW++H I  L+P G AG VLA+G++++   +E +IRK LI + +L++CIV L
Sbjct  298  PPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLI-EQDLVECIVTL  356

Query  367  PAKLFLNTQIPAALWFLNRNRAGMDIGGHAKTIVGAnnhlplqnppqqnppqyhhpRTHE  426
            P++LF +TQIP  LWF++ N+     G ++K                         R +E
Sbjct  357  PGQLFYSTQIPVCLWFISNNK-----GQNGKK-----------------------ERENE  388

Query  427  ILFIDARNLGHLINRRTKELSHDDIQQIANTYHAWRNPAVIPAQTGIQPYEDIKGFCASV  486
            ILFIDAR++GH+++R  KE+S++DIQ++A+TYHAWR        T  +PYEDI GFC   
Sbjct  389  ILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRG-------TNDKPYEDIAGFCKVA  441

Query  487  PVERVAELDYVLTPGRYVGLPD-EEDDFNFPERFAALKAEFEAQLQEEVALNQAIVESLA  545
             +E V + +Y+LTPGRYVGL+D EED+  F ++   + +E+  Q+     L++ I  SL 
Sbjct  442  NLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLE  501

169) Bxe_A0224 in NC_007951


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  460 bits (1734),  Expect = 7e-131, Method: Compositional matrix adjust.
 Identities = 270/516 (53%), Positives = 379/516 (74%), Gaps = 28/516 (5%)

Query  8    TLWATADKQRANMDAAEYKHIVLGLIFLKYISDTFAGRRAELTR-RFADENDEYFlrecd  66
             LW +ADK R++MDAAEYK++ LGLIFLKY+SD+F  +  EL +  +ADE+D+       
Sbjct  12   KLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ-------  64

Query  67   dellaeeledrdYYREVNVFWVPETARWESLRSAAKQTDIGKRIDEALAEIEAENPKLKG  126
                       D Y   N+FWVP  ARW+ +   AK+ +IG+ ID A+  IE EN  LKG
Sbjct  65   -----------DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKG  113

Query  127  ILDKRYARSQLPDGKLGELVDLISTIGFGEDASHARDVLGQVYEYFLGQFASAEGKKGGQ  186
            +L K YAR+ L   KLG+++DL+ T+  G+  S+ +DVLG+VYEYF+++FASAEGK++G+
Sbjct  114  VLPKEYARPALDKEKLGDIIDLF-TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGE  172

Query  187  FYTPASIVKTLVAVLAPHHGKVYDPCCGSGGMFVQSEKFIEAHGGKLGDVSIYGQESNPT  246
            FYTP+SIVK LV ++ P  G++YDPCCGSGGMFVQSE+F+E H G+L+D++IYGQESNPT
Sbjct  173  FYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPT  232

Query  247  TWRLAAMNLAIRGIDYNLGREPADTFVRNQHPDLRADFVLANPPFNVSDWWHGSLEGDPR  306
            TW+LA MNLAIRGID +LG   ADTF  + H +L+AD++LANPPFN SDW +  L +D R
Sbjct  233  TWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYR  292

Query  307  WVYGTPPQGNANYAWLQHMLYHLKPNGRAGIVLANGSMSSSQNSEGDIRRamvdadvvev  366
            W +G PP+GNANYAW++HM+  L PNG AG+VLANGSMS+S + E +IR+ +++ D+VE 
Sbjct  293  WQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVEC  352

Query  367  mvaLPGQLFFNTQIPACLWFLAKQ-----KTTRKGEVLFIDARKLGSMISRVQTELTDEI  421
            +V+LPGQLF++TQIP CLWF++++     K  R  E+LFIDAR +G M+SR   E++DE 
Sbjct  353  IVTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDED  412

Query  422  IERIANTVAAWRGEAIDGVGEYADVPGYCRSVKLAEIAEHGHVLTPGRYVGAEKVEDDDE  481
            I+++A+T  AWRG        Y D++G+C+  +L E+ ++  +LTPGRYVG   VE+D+E
Sbjct  413  IQKVAQTYHAWRGTNDKP---YEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEE  469

Query  482  AFVEKMQKLTEMLGEQMAKGAELDQLIRQKLGGMGY  517
            +F +KM+++T  L+EQ AK+ EL++ IR+ L G+GY
Sbjct  470  PFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGY  505

170) Cagg_3300 in NC_011831


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  459 bits (1728),  Expect = 2e-130, Method: Compositional matrix adjust.
 Identities = 276/520 (54%), Positives = 376/520 (73%), Gaps = 19/520 (3%)

Query  20   ATVGYEAELWQMANALRGSMDAAEYKHVVLGLIFLKYISDAFEEQHARLEAERAQGADPE  79
            AT+G+E  LWQ A+ LRGSMDAAEYK+V LGLIFLKY+SD+FEE+   L  +    AD E
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPY--ADEE  62

Query  80   DPDEYRAVNVFWVPPEARRAHRNARVKQPTIGRLVDDAMAGIERDNPALTGVVPKNDDRP  139
            D DEY A N+FWVP EAR+   N   K+P IG+++D AM +IE +N +L GV+PK+  RP
Sbjct  63   DQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARP  122

Query  140  VLDRQHLGRLIDLIGTIRVGDEEARAKDVLGRVDEEGRSQFASAEGTQRGALTTPRCVVK  199
             LD++ LG +IDL+ T++VGD E+R +DVLGRV E   ++FASAEG + G + TP  +VK
Sbjct  123  ALDKEKLGDIIDLF-TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVK  181

Query  200  LPVERLDPYRGRVDDPCCGSAGMFVQSVEFIRAHAngngnggKTGADISIYGQESNYTTW  259
            L VE ++PY+GR+ DPCCGS+GMFVQS  F+  H            DI+IYGQESN TTW
Sbjct  182  LLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRL-------DDIAIYGQESNPTTW  234

Query  260  RLAKMNLAIRGIDGQIA--HGDTFHNDRFPDLKADFILANPPFNVKDWGGERLRDDKRWK  317
            +LAKMNLAIRGID +++  ++DTFHND   +LKAD+ILANPPFN  DWG ERL DD RW+
Sbjct  235  KLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQ  294

Query  318  YGVPPVGNANFAWVQRIIHHLAPTGYAGFVLANGSMSSNRSGEGEIRKHIIEADLVDCMV  377
            +G+PP GNAN+AW++++I  LAP G AGFVLANGSMS++  +E EIRK++IE DLV+C+V
Sbjct  295  FGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIV  354

Query  378  ALPGRRCSATQIPACLWFSARDTSGRGGFGPHPSRNRRGHVRFIDARTMGCMVDRTHCDL  437
            +LPG+   +TQIP CLWF + +       G +  ++R  ++ FIDAR +G MV RT  ++
Sbjct  355  TLPGQLFYSTQIPVCLWFISNNK------GQNGKKERENEILFIDAREIGHMVSRTLKEF  408

Query  438  TDEDITKIADTSHAWRGEQEAGDDADVPGFGTSATREAIRTHGDVLTPGRSVGAEAVEDD  497
            +DEDI K+A+T HAWRG ++   + D++GF   A  E ++ +  +LTPGR VG   VE+D
Sbjct  409  SDEDIQKVAQTYHAWRGTNDKPYE-DIAGFCKVANLEEVKNNEYILTPGRYVGLADVEED  467

Query  498  GEPFDEKMKRLVTQLREQQAEARRLDEAIWKNLRELGYDA  537
             EPF++KM R+ ++L EQ A ++ L++ I+K+L  LGY+ 
Sbjct  468  EEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

171) Sputcn32_2908 in NC_009438


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  458 bits (1726),  Expect = 3e-130, Method: Compositional matrix adjust.
 Identities = 267/519 (52%), Positives = 389/519 (75%), Gaps = 30/519 (5%)

Query  8    TLWAAADKLRANVDAAEYKHLVLGLIFLKFVSDTFaarraelerrFVDVNDDYFLHDADA  67
             LW AADKLR+++DAAEYK++ LGLIFLK+VSD+F  +       + ++++D + ++   
Sbjct  12   KLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEK-------YEELKQDPYADE---  61

Query  68   DFIAEELEERDYYIEVNVFWVPEPARWEGLRANAKQANIGKQIDDALDAIEKENPSLKGI  127
                   E++D Y+  N+FWVP  ARW+ +  NAK+++IG+ ID A+ AIE+EN SLKG+
Sbjct  62   -------EDQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGV  114

Query  128  LDKRYARAPLPDGKLGELVDLISTIGFGEDQSKARDILGQVYEYFLGQFASAEGKKGGQF  187
            L K YAR++L   KLG+++DL+ T+  G+ +S+ +D+LG+VYEYF+++FASAEGK++G+F
Sbjct  115  LPKEYARPALDKEKLGDIIDLF-TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEF  173

Query  188  YTPQSIVNTLVAVLDPHQGKVYDPCCGSGGMFVQSEKFIEAHGGKLGDVSIYGQESNPTT  247
            YTP SIV+ LV +++P +G++YDPCCGSGGMFVQSE+F+E H G+L+D++IYGQESNPTT
Sbjct  174  YTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTT  233

Query  248  WRLAAMNLAIRGIDFNLGREPGDTFTKNQHSDLRADYILANPPFNISDWWHGSLEGDPRW  307
            W+LA MNLAIRGID +LG   +DTF ++ H +L+ADYILANPPFN SDW +  L +D RW
Sbjct  234  WKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRW  293

Query  308  VYGNPPQGNANYAWLQHMLYHLKPTGRAGIVLANGSMSSSQNTEGDIRRamvdadvvevm  367
             +G PP+GNANYAW++HM+  L P G AG+VLANGSMS+S + E +IR+ +++ D+VE +
Sbjct  294  QFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECI  353

Query  368  vaLPGQLFFNTQIPACLWFLTKQ-----KTARKGEVLFIDARKLGKMISRVQSELDQAAI  422
            V+LPGQLF++TQIP CLWF++++     K  R  E+LFIDAR +G M+SR   E+ +  I
Sbjct  354  VTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDI  413

Query  423  DRIANTAKAWRGEDMTGVEGFEDGYQDIPGFCRSVPLSEIAEHGHVLTPGRYVGAEEVED  482
            +++A+T  AWRG +       +  Y+DI+GFC+   L E+ ++  +LTPGRYVG  +VE+
Sbjct  414  QKVAQTYHAWRGTN-------DKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEE  466

Query  483  CDDAFADKMTMLTEKLAEQMAKGAELDQLIRQKLGGLGY  521
             +++F +KM  +T  L+EQ AK+ EL++ IR+ L GLGY
Sbjct  467  DEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGY  505

172) Cyan7425_3148 in NC_011884


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  458 bits (1724),  Expect = 4e-130, Method: Compositional matrix adjust.
 Identities = 281/524 (54%), Positives = 395/524 (76%), Gaps = 25/524 (4%)

Query  14   SLEQKLWKAADKLRKNIDAAEYKHIVLGLIFLKYISDAFDKLHAKLVAGEGEYAGADPED  73
            ++E+KLW+AADKLR ++DAAEYK++ LGLIFLKY+SD+F+     L   ++ YA  D ED
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL--KQDPYA--DEED  63

Query  74   PDEYKAENVFFVPPDARWSVLQGQAKQPTIGQKVDEAMEAIERENPKLLKGILPKVYGQQ  133
             DEY AEN+F VP +ARW  ++++AK+P IGQ +D AM AIE EN  L KG+LPK Y++ 
Sbjct  64   QDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESL-KGVLPKEYARP  122

Query  134  KLDPTALGGLIDMIGSTNLAKAEAESDGQLVLETEPIAEPRRQQDLLGQVYEYFLGQFAL  193
             LD   LG++ID++    +  +++ES               R+QD+LG+VYEYF+++FA 
Sbjct  123  ALDKEKLGDIIDLF---TFKVGDTES---------------RKQDVLGRVYEYFIAKFAS  164

Query  194  AEGKKGGQFYTPESVVKVLVEMLEPYKGRVFDPCCGSGGMFVQSEKFVSHHQGRLNDISI  253
            AEGK++G+FYTP S+VK+LVEM+EPYKGR++DPCCGSGGMFVQSE+FV  HQGRL+DI+I
Sbjct  165  AEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAI  224

Query  254  YGQESNETTYKLCRMNLAIRGIDGSNIRWNPEGSFLKDAHKDLKADFVIANPPFNDSDWG  313
            YGQESN TT KL +MNLAIRGID     +N++ +F +D HK+LKAD+++ANPPFN SDWG
Sbjct  225  YGQESNPTTWKLAKMNLAIRGIDNDLGERNAD-TFHNDLHKGLKADYILANPPFNASDWG  283

Query  314  GDLLRQDGRWQYGVPPVGNANFAWVQHFLYHLALTGAAGFVlsngslssntsgegeIRKA  373
             + L +D RWQ+G+PP GNAN+AW++H +  LA  G+AGFVL+NGS+S++  +E EIRK 
Sbjct  284  QERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKN  343

Query  374  LVQADLVDCIVMLPTQLFYNTGIPACLWFLSRYKNGNKNRDRKGEVLFIDASELGYMVNR  433
            L++ DLV+CIV LP QLFY+T IP CLWF+S  K  N +++R  E+LFIDA E+G MV+R
Sbjct  344  LIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSR  403

Query  434  RNRAFAEEDIQKIAGTYHEWK-RDGSTYQDIKGFCKSATLAEIEKHNFVLTPGRYVGIPD  492
              + F++EDIQK+A TYH W+  ++  Y+DI GFCK A L E+ +++++LTPGRYVG++D
Sbjct  404  TLKEFSDEDIQKVAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLAD  463

Query  493  EVESEVSFeetmaaltaelaaQMKEAAELDEEIKIQLAKVGFDL  536
              E E +FE+ M  +T+EL+ Q   + EL+++I+  L  +G+++
Sbjct  464  VEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

173) CAP2UW1_1873 in NC_013194


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  457 bits (1721),  Expect = 7e-130, Method: Compositional matrix adjust.
 Identities = 270/511 (53%), Positives = 381/511 (75%), Gaps = 22/511 (4%)

Query  8    TLWATADKLRANMDAAEYKHLVLGLIFVKYISDTfaarraelarrfadpaddyyldaadl  67
             LW +ADKLR++MDAAEYK++ LGLIF+KY+SD+F  +  EL +                
Sbjct  12   KLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPY-------------  58

Query  68   iaEELEDRDYYREVNVFWVPESARWEALRTAAKQPDIGKRIDDALTLIEVENPKLKGILD  127
               + ED+D Y   N+FWVP  ARW+ +   AK+P+IG+ ID A+  IE EN  LKG+L 
Sbjct  59   --ADEEDQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLP  116

Query  128  KRYARAQLPDGKLGELVDLVSTIGFGADPGKARDVLGQVYEYFLGQFASAEGKKGGQFYT  187
            K YAR+ L   KLG+++DL  T+  G   ++ +DVLG+VYEYF+++FASAEGK++G+FYT
Sbjct  117  KEYARPALDKEKLGDIIDLF-TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYT  175

Query  188  PASIVKTLVAVLAPHHGKVYDPCCGSGGMFVQSEKFVEAHGGKLGNVSIYGQESNPTTWR  247
            P+SIVK LV ++ P  G++YDPCCGSGGMFVQSE+FVE H G+L++++IYGQESNPTTW+
Sbjct  176  PSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWK  235

Query  248  LAAMNLAIRGIDFNLGREPADTFTRNQHPDLRADFILANPPFNVSDWWHGSLEGDPRWEF  307
            LA MNLAIRGID +LG   ADTF  + H +L+AD+ILANPPFN SDW +  L +D RW+F
Sbjct  236  LAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQF  295

Query  308  GTPPQGNANYAWLQHMLYHLKPSGRAGIVLANGSMSSSQNSEGDIRRAMVDADVVEVMIA  367
            G PP+GNANYAW++HM+  L P+G AG+VLANGSMS+S + E +IR+ +++ D+VE +++
Sbjct  296  GIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVT  355

Query  368  LPGQLFFNTQIPACLWFLTKHKA-----ARPGEVLFIDARKLARMISRVQTELSDEVIDR  422
            LPGQLF++TQIP CLWF++++K+      R  E+LFIDAR +++M+SR   E+SDE I++
Sbjct  356  LPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQK  415

Query  423  IAGTVAAWRDEADAEEYQDIPGYCRSVNLAEIADHGHVLTPGRYVGaeevedddeafadK  482
            +A T  AWR+ ++   Y+DI+G+C+  NL E+ ++  +LTPGRYVG  +VE+D+E+F +K
Sbjct  416  VAQTYHAWRG-TNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQK  474

Query  483  MQKLTEKLGEQMAKGAELDALIRQKLGGLGY  513
            M+++T  L+EQ AK+ EL+  IR+ L GLGY
Sbjct  475  MERITSELSEQFAKSKELEDQIRKSLEGLGY  505

174) PSM_A2853 in NC_014803


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  456 bits (1718),  Expect = 1e-129, Method: Compositional matrix adjust.
 Identities = 259/551 (48%), Positives = 390/551 (71%), Gaps = 52/551 (9%)

Query  11   TDLEKKLWNAADKLRSTLDAAQYKHAVLGLVFIKYVSDAFKIRQDELISAFNNPDSDYFL  70
             ++E KLW+AADKLR+++DAA+YK+  LGL+F+KYVSD+F  + +EL             
Sbjct  7    IGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL-------------  53

Query  71   DPEDFGGKESAEYQEELAVELEQRDYYLETNTFWVPTQARWSFLQDNNKTVIGGAELPIG  130
                        Y +E     E++D YL  N FWVP +ARW +++DN K           
Sbjct  54   --------KQDPYADE-----EDQDEYLAENIFWVPKEARWQYINDNAKK----------  90

Query  131  NDKTIKITSVGHLIDNALDAIEVANPKLKGVLNKQYTRLQIDQVKLAELIDLIATIPFVH  190
                     +G++ID+A+ AIE  N  LKGVL K+Y+R  +D+ KL+++IDL+ T+   +
Sbjct  91   -------PEIGQIIDKAMIAIENENESLKGVLPKEYARPALDKEKLGDIIDLF-TFKVGD  142

Query  191  ASLNSKDILGHVYEYMLGQFALAEGKKGGQFYTPKSIVSLMVQMMEPFKGRVYDPAMGSG  250
            +    +D+LG+VYEY +++FA AEGK++G+FYTP SIV L+V+M+EP+KGR+YDP  GSG
Sbjct  143  TESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSG  202

Query  251  GFFVQSEHFINAHKGKIGDVSIYGQEYNHTTWQLASMNMAIRGIDFNFGKEPANTYTNDQ  310
            G FVQSE+F++ H+G+++D++IYGQE N TTW+LA MN+AIRGID ++G   A+T+ ND 
Sbjct  203  GMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRGIDNDLGERNADTFHNDL  262

Query  311  HPDLRADFVMANPPFNMKEWDVGVSDDDPRWAYGTPPSGNANFAWLQHMLYHTAPNGSVG  370
            H +L+AD+++ANPPFN  +W+     DD RW +G PP GNAN+AW++HM+   APNG+ G
Sbjct  263  HKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAG  322

Query  371  LLLANGSMSSNTNNEGAIRKALIEQDLVECMVALPGQLFTNTQIPACIWFLTKNKNARVS  430
            ++LANGSMS++ ++E  IRK LIEQDLVEC+V+LPGQLF +TQIP C+WF+++NK    +
Sbjct  323  FVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNK----G  378

Query  431  ASGRQLTDRRGKVLFIDARNLGYMKDRVLRDFTQTDLDQVTATFHNWQQASD--YQDTAG  488
             +G++  +R   +LFIDAR++G M  R L++F++ D+++V+ T+H W+ ++D  Y+D AG
Sbjct  379  QNGKK--ERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRGTNDKPYEDIAG  436

Query  489  FCASVDFAGITKHDFVLTPGRYVGAEAAEDDGELFADKMARLTTQLKSQFAESEHLEAQI  548
            FC   ++  + +++++LTPGRYVG    E+D E F +KM R+T++L  QFA S +LE QI
Sbjct  437  FCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQI  496

Query  549  KQNLEGLGYDI  559
            +++LEGLGY++
Sbjct  497  RKSLEGLGYGV  507

175) hsdM in NC_004757


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  456 bits (1717),  Expect = 2e-129, Method: Compositional matrix adjust.
 Identities = 283/562 (51%), Positives = 394/562 (71%), Gaps = 65/562 (11%)

Query  11   DLEKKLWTAADKLRSNLDAAVYKHVVLGLIFLKYVSDAFeerqrelreqFTNPQHDYYMD  70
            ++E KLW AADKLR+++DAA YK+V LGLIFLKYVSD+F                     
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSF---------------------  46

Query  71   PEEYGGAGTPEYEDNIAAELEVRDYYTEKNVFWVPVEARWQTLRDCAQLPPKAALPWNKP  130
             E Y       Y D+     E +D Y   N+FWVP EARWQ + D A+ P          
Sbjct  47   EEKYEELKQDPYADE-----EDQDEYLAENIFWVPKEARWQYINDNAKKP----------  91

Query  131  GKDEPEEMRSVGWLIDNAMEAIERENIRLKNVLNKDFARVQLDSSKLGELIALFSDTDFA  190
                      +G +ID+AM AIE EN  LK VL K++AR  LD  KLG++I LF      
Sbjct  92   ---------EIGQIIDKAMIAIENENESLKGVLPKEYARPALDKEKLGDIIDLF------  136

Query  191  AKTYKGQPLSLQSRDILGHVYEYFLGQFALAEGKKGGQYYTPKSIVTLIVEMLQPFKGRV  250
              T+K      + +D+LG+VYEYF+++FA AEGK++G++YTP SIV L+VEM++P+KGR+
Sbjct  137  --TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRI  194

Query  251  YDPAMGSGGFFVQSEEFIGQHGGKAANGKSGQISVYGQESNPTTWRLAAMNMAIRGIDFN  310
            YDP  GSGG FVQSE F+ +H     +G+ ++I++YGQESNPTTW+LA MN+AIRGID +
Sbjct  195  YDPCCGSGGMFVQSERFVEKH-----QGRLDDIAIYGQESNPTTWKLAKMNLAIRGIDND  249

Query  311  FGSGPADTLLNDLHPDLRADFVMANPPFNMKEWWNEKLANDPRWIAGTPPQGNANFAWLQ  370
            +G   ADT+ NDLH +L+AD+++ANPPFN  +W +E+L +D RW  G PP+GNAN+AW++
Sbjct  250  LGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAWIE  309

Query  371  HMLWHLAPTGSMALLLANGSMSSNTNSEGEIRKRLTEDDYVECMVALPGQLFTNTQIPAC  430
            HM+  LAP G+ +++LANGSMS++ + E EIRK L E+D VEC+V+LPGQLF +TQIP C
Sbjct  310  HMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVC  369

Query  431  IWFLTRDKQNGFALDKKKRDRRGEFLFIDARQMGYMKDRVLRDFTVDDIQKIADTFHAWQ  490
            +WF++ +K      ++ K++R  E+LFIDAR++G M  R L++F+ +DIQK+A+T+HAW+
Sbjct  370  LWFISNNKG-----QNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWR  424

Query  491  QGDG--YEDVPGFCKSASLEEVRKHEHVLTPGRYVGTAEQEEDGEPFADKMQRLTAQLAE  548
              ++  YED++GFCK A+LEEV+++E +LTPGRYVG A+ EED EPF +KM+R+T++L+E
Sbjct  425  GTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSE  484

Query  549  QFAESARLETEIRKNLAGLGYG  570
            QFA S  LE +IRK+L GLGYG
Sbjct  485  QFAKSKELEDQIRKSLEGLGYG  506

176) Isova_0872 in NC_015588


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  455 bits (1716),  Expect = 2e-129, Method: Compositional matrix adjust.
 Identities = 274/549 (50%), Positives = 382/549 (70%), Gaps = 63/549 (11%)

Query  21   LKDTLWKAADKLRGSMDASQYKDVILGLVFLKYVSDAFEERRAAILEECLADGLSEDDAA  80
            + + LW+AADKLRGSMDA++YK+V LGL+FLKYVSD+FEE+   + ++  AD        
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADE-------  61

Query  81   PLLEDVDEYRRAGAFWVPERARWGYLAQHAKGRSATPDEPEASIGQLVDDAMLLLMGSNP  140
               ED DEY     FWVP  ARW Y+ ++AK          + IGQ++D AM+ +   N 
Sbjct  62   ---EDQDEYLAENIFWVPKEARWQYINDNAK---------KPEIGQIIDKAMIAIENENE  109

Query  141  TLKGTLPTIFNRDSVDQRRLGELVDLFSSARFTGVMADGTKVSKARDVLGEVYEYFLGKF  200
            +LKG LP  + R ++D+ +LG+++DLF+   F      G   S+ +DVLG VYEYF++KF
Sbjct  110  SLKGVLPKEYARPALDKEKLGDIIDLFT---FKV----GDTESRKQDVLGRVYEYFIAKF  162

Query  201  AAAEGKRGGEFYTPPGVVRVLVEVLEPYRGRVYDPCCGSGGMFVQAEKFLERHGADPQAI  260
            A+AEGK +GEFYTP+++V++LVE++EPY+GR+YDPCCGSGGMFVQ+E+F+E+H +  + I
Sbjct  163  ASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDI  222

Query  261  SVFGQELNERTWRMAKMNLAVHGLTGNLGPRWGDTFARDLHPELQADYVLANPPFNIKDW  320
            +++GQE N  TW++AKMNLA++G+  +LG R +DTF  DLH  L+ADY+LANPPFN  DW
Sbjct  223  AIYGQESNPTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDW  282

Query  321  ARNT--DDARWKFGVPPAGNANYAWIQHILSKLAPGGSAGVVMAngsmssnsggegeIRA  378
            +++   DD RW+FG+PP GNANYAWI+H++SKLAP G+AG V+ANGSMS+++ +E EIR 
Sbjct  283  GQERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRK  342

Query  379  QLVEADLVSCMVALPTQLFRSTGIPVCVWFFAKDKG-----ARAGEVLFIDARNLGHMVD  433
            +L+E DLV C+V+LP QLF ST IPVC+WF++++KG      R  E+LFIDAR++GHMV 
Sbjct  343  NLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVS  402

Query  434  RAERALSDDDIAKIADTYHAWKRGpspesepvetlpvvepvetepvetepvvepvettYS  493
            R+ + +SD+DI K+A+TYHAW+                                 +  Y 
Sbjct  403  RTLKEFSDEDIQKVAQTYHAWR------------------------------GTNDKPYE  432

Query  494  DIPGFCYSATLAEIKDAGYALTPGRYVGAAEVEDDGEPIEQKIERLTAELFAQFDESARL  553
            DI+GFC  A L E+K+  Y LTPGRYVG A+VE+D EP+EQK+ER+T+EL  QF  S  L
Sbjct  433  DIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQFAKSKEL  492

Query  554  EQVVREQLG  562
            E+ +R  L 
Sbjct  493  EDQIRKSLE  501

177) A458_03940 in NC_018028


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  455 bits (1713),  Expect = 4e-129, Method: Compositional matrix adjust.
 Identities = 278/520 (54%), Positives = 381/520 (74%), Gaps = 29/520 (5%)

Query  122  EKTLWATADKLRANMDAAEYKHIVLGLIFLKYISDSFAGRRAELERKlldesddyylgdd  181
            E  LW +ADKLR++MDAAEYK++ LGLIFLKY+SDSF  +  EL +              
Sbjct  10   EEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDP------------  57

Query  182  dpellNAELEDRDYYREVNVFWVPEVARWESIRASAKQVDIGKRIDDALAAIEAENPRLK  241
                  A+ ED+D Y   N+FWVP  ARW+ I  +AK+ +IG+ ID A+ AIE EN  LK
Sbjct  58   -----YADEEDQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLK  112

Query  242  NILDKRYARAQLPDGKLGELVDLISTIGFGDDTSKARDLLGQVYEYFLGQFASAEGKKGG  301
             +L K YAR+ L   KLG+++DL+ T+  GD  S+ +D+LG+VYEYF+++FASAEGK++G
Sbjct  113  GVLPKEYARPALDKEKLGDIIDLF-TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAG  171

Query  302  QFYTPASIVKTLVAVLNPHHGKVYDPCCGSGGMFVQSEKFIEAHGGKLGDVSIYGQESNP  361
            +FYTP+SIVK LV +++P  G++YDPCCGSGGMFVQSE+F+E H G+L+D++IYGQESNP
Sbjct  172  EFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNP  231

Query  362  TTWRLAAMNLAIRGIDFNLGKEPADTFIRNQHSDLRADFVLANPPFNISDWWHGSLEGDP  421
            TTW+LA MNLAIRGID +LG   ADTF  + H +L+AD++LANPPFN SDW +  L +D 
Sbjct  232  TTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDY  291

Query  422  RWVYGTPPQGNANYAWLQHMLYHLKPNGRAGIVLANGSMSSSQNSEGDIRKamveadvve  481
            RW +G PP+GNANYAW++HM+  L PNG AG+VLANGSMS+S + E +IRK ++E D+VE
Sbjct  292  RWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVE  351

Query  482  vmvaLPGQLFFNTQIPACLWFLARQ-----KTARPGEVLFIDARKLGTSVSRVQIELTDA  536
             +V+LPGQLF++TQIP CLWF++ +     K  R  E+LFIDAR +G  VSR   E++D 
Sbjct  352  CIVTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDE  411

Query  537  DIERIAQTVANWRGEPLDVGGEIGEYQDVAGFCRSVKLAEIAEHGHVLTPGRYVGaeeve  596
            DI+++AQT   WR      G +   Y+D+AGFC+  +L E+ ++  +LTPGRYVG  +VE
Sbjct  412  DIQKVAQTYHAWR------GTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVE  465

Query  597  dddeafaeKMQRLTQQLGEQMQKGAELDQLIRQKLGGLGY  636
            +D+E+F +KM+R+T +L+EQ  K+ EL++ IR+ L GLGY
Sbjct  466  EDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGY  505

178) HCBAA847_2281 in NC_020555


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  454 bits (1712),  Expect = 3e-129, Method: Compositional matrix adjust.
 Identities = 265/499 (54%), Positives = 372/499 (75%), Gaps = 13/499 (2%)

Query  10   LEAALFSAADKLRKNIDAAEYKHIVLGLVFLKYISDSFESLHKELLSQN-EDAEDKDEYI  68
            +E  L  AADKLR ++DAAEYK++ LGL+FLKY+SDSFE    EL  +   D ED+DEY+
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDEYL  68

Query  69   AKNIFFVPQDSRWSTLLSKAKSPQIGKDLDYALDLIEKDNPQLKGVLPKVYAKDNLDSAT  128
            A NIF VP+++RW  +  +AK P+IG+ +D A+  IE++N  LKGVLPK YA+  LD   
Sbjct  69   AENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALDKEK  128

Query  129  LGDLINLID-SISLNQENTSDILGHIFEYFLGEFALSEGKKGGQFYTPKSVVELLVAMLE  187
            LGD+I+L+   ++  +    D+LG+++EYF++ FA +EGK++G+FYTP S+V LLV M+E
Sbjct  129  LGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIE  188

Query  188  PYNGRVFDPCCGSGGMFVQSERFVREHQGKISDISIYGQESNQTTWRLAKMNLALRKIDS  247
            PY+GR++DPCCGSGGMFVQSERFV  HQG++ DI+IYGQESN TTW+LAKMNLA+R ID+
Sbjct  189  PYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRGIDN  248

Query  248  SSLKWNSEGSFLNDAHKDLKADFIIANPPFNATDWGSEALENDVRWQYGTPPSTNANYAW  307
                +N++ +F ND HK+LKAD+I+ANPPFNA+DWG E L +D RWQ+G PP  NANYAW
Sbjct  249  DLGERNAD-TFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAW  307

Query  308  ISHFIHHLAPKGRAGFVLAKGSLTSNTSTEGQIRKNLIESNLIECIVNLPAKLFLNTQIP  367
            I H I  LAP+G AGFVLA+GS++++   E +IRKNLIE +L+ECIV LP++LF +TQIP
Sbjct  308  IEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIP  367

Query  368  ACLWFIKRNKPH-------NNTLFIDARSLGELINRKNRILNKDDIDKITETYHKWQKAQ  420
             CLWFI  NK +       N+ LFIDAR +G++++R  + ++ +DI+K+++TYH W+ ++
Sbjct  368  VCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRGTN  427

Query  421  EQNGDYSDILGFCKSVSKEEMANLGYVLTPGRYVGLAeddedfdf-erefTRLKAELESQ  479
            ++   Y DI GFCK  + EE+ N  Y+LTPGRYVGLA+ +ED +  E+   R+ +EL  Q
Sbjct  428  DKP--YEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQ  485

Query  480  IKEERILSEKILNNLELIG  498
            +   + L ++I ++LE +G
Sbjct  486  FAKSKELEDQIRKSLEGLG  504

179) CDCE8392_2206 in NC_016785


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  454 bits (1712),  Expect = 4e-129, Method: Compositional matrix adjust.
 Identities = 256/523 (49%), Positives = 388/523 (75%), Gaps = 26/523 (4%)

Query  14   TSKEIKDTLWKSADKLRGSMDASQYKDVALGLVFIKYVSDSFDERQREIRAELEGQGIDE  73
            ++  + + LW++ADKLRGSMDA++YK+VALGL+F+KYVSDSF+E+  E++        ++
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELK--------QD  56

Query  74   EYILEDLADVDAYTSENVFWVASNARWDFLKKYSKGMDLEGKHKSIGKLIDEAMQQLMAD  133
             Y  E+  D D Y +EN+FWV+ +ARW++++        ++K   IG++ID AM  +  +
Sbjct  57   PYADEE--DQDEYLAENIFWVPKEARWQYIND-------NAKKPEIGQIIDKAMIAIENE  107

Query  134  NESLLGTLPQIYGKDNIDQRRLGELVDLFSSTYFASTKDKKARDLLGEVYEYFLDKFAKA  193
            NESL G LP+ Y++  +D+ +LG+++DLF  T+  +  + + +D+LG VYEYF+ KFA A
Sbjct  108  NESLKGVLPKEYARPALDKEKLGDIIDLF--TFKVGDTESRKQDVLGRVYEYFIAKFASA  165

Query  194  EGKRGGEFYTPQPIVRTLVEILEPTEGRVYDPCCGSGGMFVQAEKFLEATKRDRSNIAVY  253
            EGK +GEFYTP +IV+ LVE++EP  GR+YDPCCGSGGMFVQ+E+F+E  +    +IA+Y
Sbjct  166  EGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIY  225

Query  254  GQELNERTWRMAKMNLAIHAISSSGLGERWGDTFARDIHAGTKMDYIMANPPFNIKDWIR  313
            GQE N  TW++AKMNLAI++I  ++LGER +DTF  D+H G K DYI+ANPPFN  DW +
Sbjct  226  GQESNPTTWKLAKMNLAIRGI-DNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQ  284

Query  314  NE--EDARWKYGVPPAKNANFAWIQHIISKLKDHGEAGVVMANGTMTSQSSGEGEIRKNM  371
            +   +D RW++G+PP  NAN+AWI+H+ISKL  +G AG V+ANG+M++ + +E EIRKN+
Sbjct  285  ERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNL  344

Query  372  VEDDVVSCVIALPAQLFRGTGIPVCVWFFAkdksvgvggsvdrrgEVLLIDARQLGHMID  431
            +E+D+V C+++LP+QLF +T IPVC+WF++  ++ G  G  +R  E+L+IDAR++GHM+ 
Sbjct  345  IEQDLVECIVTLPGQLFYSTQIPVCLWFIS--NNKGQNGKKERENEILFIDAREIGHMVS  402

Query  432  RTERAFSDEDIAKIANAFRTWRGRKSAEGEYEDEAGFCKSATIEEIREAGYALTPGRYVG  491
            RT + FSDEDI K+A+++++WRG  + +  YED AGFCK A +EE+++  Y LTPGRYVG
Sbjct  403  RTLKEFSDEDIQKVAQTYHAWRG--TNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVG  460

Query  492  MSEVEDDGEPIDEKIARLTAELTAALDESARLDALVREQLGRL  534
            +++VE+D EP+++K+ R+T+EL+  +  S  L+  +R  L  L
Sbjct  461  LADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

180) Psest_4048 in NC_019936


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  454 bits (1712),  Expect = 4e-129, Method: Compositional matrix adjust.
 Identities = 274/562 (49%), Positives = 400/562 (72%), Gaps = 65/562 (11%)

Query  12   LEKKLWTAADKLRSALDASVYKHVVLGLIFLKYVSDAFEERQRELRAQLTNPADDYFMDP  71
            +E KLW AADKLR+++DA+ YK+V LGLIFLKYVSD+FEE+  EL+       +D + D 
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELK-------QDPYADE  61

Query  72   EDYGDLGSeeyeeniaaeleVRDYYTEKNVFWVPMEARWQTLRELAQLPPGEPLPWNAPG  131
            ED                   +D Y   N+FWVP EARWQ + +                
Sbjct  62   ED-------------------QDEYLAENIFWVPKEARWQYIND----------------  86

Query  132  KDTAEKMRTVGWLIDNAMEAIERENVKLKNVLNKEFSRTQLDSHKLADLIAHFSDTNFSQ  191
                 K   +G +ID+AM AIE EN  LK VL KE++R  LD +KL+D+I  F+      
Sbjct  87   ---NAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALDKEKLGDIIDLFT------  137

Query  192  PSYNGQPLNLKSKDILGHVYEYFLGQFALAEGKKGGQYYTPKSIVTLIVEMLQPFKGRVY  251
              ++    + + +D+LG+VYEYF+++FA AEGK++G++YTP SIV L+VEM++P+KGR+Y
Sbjct  138  --FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIY  195

Query  252  DPAMGSGGFFVQSEEFIAEHGGKVVNGKTGQISVYGQESNPTTWKLAAMNMAIRGLDFNF  311
            DP  GSGG FVQSE F+  H G++     ++I++YGQESNPTTWKLA MN+AIRG+D ++
Sbjct  196  DPCCGSGGMFVQSERFVEKHQGRL-----DDIAIYGQESNPTTWKLAKMNLAIRGIDNDL  250

Query  312  GGQPGDTLQNDLHPDLRADYVMANPPFNMKEWWNAKLEQDPRWLVGTPPQGNANFAWLQH  371
            G + +DT++NDLH +L+ADY++ANPPFN  +W + +L +D RW  G PP+GNAN+AW++H
Sbjct  251  GERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAWIEH  310

Query  372  MLYHLAPTGSMALLLANGSMSSNTNNEGEIRKQLIEQDYVECMVALPGQLFTNTQIPACI  431
            M+  LAP G+ +++LANGSMS++ ++E EIRK+LIEQD VEC+V+LPGQLF +TQIP C+
Sbjct  311  MISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCL  370

Query  432  WFLTKDKANGFNLDKKKRDRRGQFLFIDARQLGYMKDRVLRDFTLNDIKKVADTFHAWQ-  490
            WF++++K+     ++ K++R  ++LFIDAR++G M  R L++F+ +DI+KVA+T+HAW+ 
Sbjct  371  WFISNNKG-----QNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRG  425

Query  491  -HDEGYEDVAGFCCSTSLNEIRKHEHVLTPGRYVGAKEQEDDGEVFADKMTRLTAQLAEQ  549
             +D  YED+AGFC  ++L+E++++E +LTPGRYVG  + E+D E F +KM R+T++L+EQ
Sbjct  426  TNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQ  485

Query  550  FEESAKLEGEIRKNLAGLGYGI  571
            F  S  LE++IRK+L GLGYG+
Sbjct  486  FAKSKELEDQIRKSLEGLGYGV  507

181) Oweho_0002 in NC_016599


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  454 bits (1711),  Expect = 5e-129, Method: Compositional matrix adjust.
 Identities = 271/511 (54%), Positives = 381/511 (75%), Gaps = 16/511 (3%)

Query  13   EEQLWDAANKLRGNVESSEYKHVVLGLIFLKFASDTFEERRQELITEGKEKYLEMKEFYN  72
            EE+LW+AA+KLRG+++++EYK+V LGLIFLK+ SD+FEE+ +EL  +      +  E Y 
Sbjct  10   EEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDE-YL  68

Query  73   MKNVFFLAPESRWSFVMENSKQDNIALIVDTALHTIEKNNTSLKGALPDNYFSRLNLDPS  132
              N+F ++ E+RW ++ +N+K+ +I+ I+D A+ +IE++N SLKG LP +Y +R  LD  
Sbjct  69   AENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEY-ARPALDKE  127

Query  133  KLAALLDTIN-NIDTTGDAEEDVVGRIYEYFLgrfaaaegkgggefYTPKCIVNLIAEML  191
            KL+ ++D +  +++ T    +DV+GR+YEYF+++FA+AEGK +GEFYTP  IV+L+ EM+
Sbjct  128  KLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMI  187

Query  192  EPYKGKIYDPACGSGGMFVQSIDFVKSHQGNTKDISIYGQEYTAVTYKLAKMNLAIRGIS  251
            EPYKG+IYDP CGSGGMFVQS  FV  HQG   DI+IYGQE  + T KLAKMNLAIRGI 
Sbjct  188  EPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRGID  247

Query  252  ANLGDVPANTFFKDQHPDLKADYIMANPPFNQSQWREKNELEDDSRWAGYTTPPAGNANY  311
             +LG+  A+TF +D H +LKADYI+ANPPFN S+W  ++ L DD RW  +  PP GNANY
Sbjct  248  NDLGERNADTFHNDLHKGLKADYILANPPFNASDW-GQERLLDDYRWQ-FGIPPKGNANY  305

Query  312  AWILHMLSKLSETGTAGFVLANGSMSTNTSGEGDIRKQLIENDMVDCMIALPGQLFYTTQ  371
            AWI HM+SKL+  GTAGFVLANGSMST+  +E +IRK+LIE+D+V+C+++LPGQLFY+TQ
Sbjct  306  AWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQ  365

Query  372  IPVCLWFITKNKKEDEAHGYRKRTGETLFIDARNMGSMIDRTQKELTKDDIEHIASTYHN  431
            IPVCLWFI++NK +   +G + R  E LFIDAR++G M+ RT KE++ +DI+ +A TYH 
Sbjct  366  IPVCLWFISNNKGQ---NGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHA  422

Query  432  WRNCPPLEGVPEAGEDYNDIAGYCRSATLQDIQKNDYVLTPGRYVGVAEEEDDGVPFEEK  491
            WR           +  Y+DIAG+C+ A L+++++N+Y+LTPGRYVG+A+ E+D  PFE+K
Sbjct  423  WRG--------TNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQK  474

Query  492  MTDLTATLKSQMAEAAELDKAIAENLKLLGY  522
            M  +T+ L  Q A + EL+  I  +L  LGY
Sbjct  475  MERITSELSEQFAKSKELEDQIRKSLEGLGY  505

182) hsdM in NC_015740


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  454 bits (1712),  Expect = 5e-129, Method: Compositional matrix adjust.
 Identities = 277/524 (53%), Positives = 382/524 (73%), Gaps = 29/524 (5%)

Query  123  AMEKTLWATADKLRANMDAAEYKHIVLGLIFLKYISDSFAGRRAELTHKlldenddyylg  182
            + E  LW +ADKLR++MDAAEYK++ LGLIFLKY+SDSF  +  EL +            
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDP----------  57

Query  183  dddPEALNAELEDRDYYREVNVFWVPEVARWESIRAAAKQVDIGKRIDDALTAIEAENPR  242
                    A+ ED+D Y   N+FWVP  ARW+ I   AK+ +IG+ ID A+ AIE EN  
Sbjct  58   -------YADEEDQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENES  110

Query  243  LKNILDKRYARAQLPDGKLGELVDLISTIGFGDDTGKARDLLGQVYEYFLGQFASAEGKR  302
            LK +L K YAR+ L   KLG+++DL+ T+  GD  ++ +D+LG+VYEYF+++FASAEGK 
Sbjct  111  LKGVLPKEYARPALDKEKLGDIIDLF-TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKN  169

Query  303  GGQFYTPASIVKTLVAVLNPHYGKVYDPCCGSGGMFVQSEKFIEAHGGKLGDVSIYGQEA  362
            +G+FYTP+SIVK LV +++P  G++YDPCCGSGGMFVQSE+F+E H G+L+D++IYGQE+
Sbjct  170  AGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQES  229

Query  363  NPTTWRLAAMNLAIRGIDFNLGKEPADTFVRNQHSDLRADFVLANPPFNISDWWHGSLEG  422
            NPTTW+LA MNLAIRGID +LG   ADTF  + H +L+AD++LANPPFN SDW +  L +
Sbjct  230  NPTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLD  289

Query  423  DPRWVYGTPPQGNANYAWLQHMLYHLKPSGRAGIVLANGSMSSSQNSEGEIRKamveadv  482
            D RW +G PP+GNANYAW++HM+  L P+G AG+VLANGSMS+S + E EIRK ++E D+
Sbjct  290  DYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDL  349

Query  483  vevmvaLPGQLFFNTQIPACLWFLAKQ-----KTARPGEVLFIDARKLGTSVSRVQIELT  537
            VE +V+LPGQLF++TQIP CLWF++++     K  R  E+LFIDAR +G  VSR   E++
Sbjct  350  VECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFS  409

Query  538  DADIERIAQTVAKWRGEPLDMGGEIAEYQDIAGFCRSVKLAEIAEHGHVLTPGRYVGaee  597
            D DI+++AQT   WR      G +   Y+DIAGFC+  +L E+ ++  +LTPGRYVG  +
Sbjct  410  DEDIQKVAQTYHAWR------GTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLAD  463

Query  598  vedddeafaeKMQRLTQQLGEQMEKGAELDQLIRQKLGGLGYEI  641
            VE+D+E+F +KM+R+T +L+EQ  K+ EL++ IR+ L GLGY +
Sbjct  464  VEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

183) BN117_0855 in NC_018828


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  451 bits (1700),  Expect = 4e-128, Method: Compositional matrix adjust.
 Identities = 276/563 (50%), Positives = 395/563 (71%), Gaps = 65/563 (11%)

Query  11   DLEKKLWTAADKLRSNLDAAVYKHVVLGLIFLKYVSDAFeerqrelreqFTNPDHDYYMD  70
            ++E KLW AADKLR+++DAA YK+V LGLIFLKYVSD+F                     
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSF---------------------  46

Query  71   PDEYGGAGTQEYEENIAAELEVRDYYTEKNVFWVPVEARWQTLRDCAQLPPKAALPWNKP  130
             + Y     + Y ++     E +D Y   N+FWVP EARWQ + D A+ P          
Sbjct  47   EEKYEELKQDPYADE-----EDQDEYLAENIFWVPKEARWQYINDNAKKP----------  91

Query  131  GKDEPEEMRSVGWLIDNAMEAVERENARLKNVLNKDFARVQLDSSKLAGLISHFSDTDFA  190
                      +G +ID+AM A+E EN  LK VL K++AR  LD  KL+++I  F+     
Sbjct  92   ---------EIGQIIDKAMIAIENENESLKGVLPKEYARPALDKEKLGDIIDLFT-----  137

Query  191  AREYKGQPLDLKSKDILGHVYEYFLGQFALAEGKKGGQYYTPKSIVTLIVEMLRPFKGRV  250
               +K    + + +D+LG+VYEYF+++FA AEGK++G++YTP SIV L+VEM+ P+KGR+
Sbjct  138  ---FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRI  194

Query  251  YDPAMGSGGFFVQSEEFIEQHGGKAANGKSGQISVYGQESNPTTWRLAAMNMAIRGIDFN  310
            YDP  GSGG FVQSE F+E+H     +G+ ++I++YGQESNPTTW+LA MN+AIRGID +
Sbjct  195  YDPCCGSGGMFVQSERFVEKH-----QGRLDDIAIYGQESNPTTWKLAKMNLAIRGIDND  249

Query  311  FGTGPADTLLNDLHPDLRADFVMANPPFNMKEWWNEKLANDPRWIVGTPPQGNANFAWLQ  370
            +G   ADT+ NDLH +L+AD+++ANPPFN  +W +E+L +D RW  G PP+GNAN+AW++
Sbjct  250  LGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAWIE  309

Query  371  HMLHHLAPTGSMALLLANGSMSSNTNNEGEIRKRLIEDDYVECMVALPGQLFTNTQIPAC  430
            HM+  LAP G+ +++LANGSMS++ ++E EIRK LIE+D VEC+V+LPGQLF +TQIP C
Sbjct  310  HMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVC  369

Query  431  IWFLTRDKQNGFALDKKKRDRRGEFLFIDARKMGYMKDRVLRDFTPDDIQKIADTFHAWQ  490
            +WF++ +K      ++ K++R  E+LFIDAR +G M  R L++F+ +DIQK+A+T+HAW+
Sbjct  370  LWFISNNKG-----QNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWR  424

Query  491  QGEE--YEDVPGFCYSAKLEDVRKHEHVLTPGRYVGAAEQEEDSEPFAEKMERLTTQLAK  548
              ++  YED++GFC  A+LE+V+++E +LTPGRYVG A+ EED EPF +KMER+T++L+ 
Sbjct  425  GTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSE  484

Query  549  QFADSAKLEEEIKKNLAGLGYVV  571
            QFA S  LE++I+K+L GLGY V
Sbjct  485  QFAKSKELEDQIRKSLEGLGYGV  507

184) Bpro_1940 in NC_007948


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  451 bits (1698),  Expect = 5e-128, Method: Compositional matrix adjust.
 Identities = 271/531 (52%), Positives = 375/531 (71%), Gaps = 42/531 (7%)

Query  8    TLWATADKLRANMDAAEYKHLVLGLIFVKYISDTFAARRSEVATRLADPKDEYFFEGATP  67
             LW +ADKLR++MDAAEYK++ LGLIF+KY+SD+F  +  E+       +D Y       
Sbjct  12   KLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL------KQDPY-------  58

Query  68   KTLAVELEDRDYYKSVNVFWVPEAARWESLRAAAKQPDIGKRIDEALTLVEVENPKLKGI  127
                 + ED+D Y + N+FWVP  ARW+ +   AK+P+IG+ ID A+  +E EN  LKG+
Sbjct  59   ----ADEEDQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGV  114

Query  128  LDKRYARAQLPDGKLGELVDLISTVGFGDNPSVARDILGQVYEYFLGMFASAEGKRGGQF  187
            L K YAR+ L   KLG+++DL+ T   GD  S  +D+LG+VYEYF++ FASAEGK +G+F
Sbjct  115  LPKEYARPALDKEKLGDIIDLF-TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEF  173

Query  188  YTPASIVKTLVAVLNPHSGKVYDPCCGSGGMFVQSEKFIEAHGGKLGDASIYGQEANPTT  247
            YTP+SIVK LV +++P  G++YDPCCGSGGMFVQSE+F+E H G+L+D +IYGQE+NPTT
Sbjct  174  YTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTT  233

Query  248  WRLAAMNLAIRGIDFNLGREPADTFVRNQHPDLRADFILANPPFNISDWWHASLTGDARW  307
            W+LA MNLAIRGID +LG   ADTF  + H +L+AD+ILANPPFN SDW +  L +D RW
Sbjct  234  WKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRW  293

Query  308  QYGDPPTGNANYAWLQHMLHHLKPTGRAGIVLANGSMSSSQNSEGQIRaamveadvvevm  367
            Q+G PP GNANYAW++HM+  L P G AG+VLANGSMS+S + E +IR  ++E D+VE +
Sbjct  294  QFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECI  353

Query  368  iaLPGQLFFNTQIPACLWFLVKKKTR-----RQGEVLFIDARKLATMISRVQSEFTDEVI  422
            ++LPGQLF++TQIP CLWF+ ++K +     R+ E+LFIDAR ++ M+SR   EF+DE I
Sbjct  354  VTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDI  413

Query  423  ARIANTVAAWRgeslplplglgegegegegspapapYADIPGFCRSVKLKEIAQHGHVLT  482
             ++A+T  AWR                   +    PY DI+GFC+  +L E+ ++  +LT
Sbjct  414  QKVAQTYHAWR-------------------GTNDKPYEDIAGFCKVANLEEVKNNEYILT  454

Query  483  PGRYVGAEEVEDNDEDFATKMQQLTEKLGEQMAKGAELDQLIRQKLGGLGY  533
            PGRYVG  +VE+++E F  KM+++T  L+EQ AK+ EL++ IR+ L GLGY
Sbjct  455  PGRYVGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGY  505

185) H650_18285 in NC_021500


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  451 bits (1698),  Expect = 6e-128, Method: Compositional matrix adjust.
 Identities = 271/560 (49%), Positives = 398/560 (72%), Gaps = 65/560 (11%)

Query  12   LDNKFWKAADKLRANMDAANYKHVVLGLIFLKYVSDAFEARQQELITLFRDVGNPDNIYA  71
            +++K+W+AADKLR++MDAA+YK+V LGLIFLKYVSD+FE + +EL               
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL---------------  53

Query  72   MSRDDYDSDEDYAQAIVDELEVEDYYTEKNIFWVPKAARWDTLKTKAILPTGTVLWVDET  131
              +D Y  +ED           +D Y   NIFWVPK ARW+ ++                
Sbjct  54   -KQDPYADEED-----------QDEYLAENIFWVPKEARWQYIN----------------  85

Query  132  TGQDVKLRSVSWLVDNALDEIEKTNPKLKGILNR-ISQYQLGNEVLTGLINTFSDANFSN  190
              ++ K   ++ ++D+A+  IE+ N  LKG+L +  ++  L++E L ++I+ F+      
Sbjct  86   --DNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALDKEKLGDIIDLFT------  137

Query  191  PEYNGEKLSLKSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEMLQPYNGRVY  250
              ++      + +D+LG+VYEYF+++FA AEGK++G++YTP SIV L+VEM++PY+GR+Y
Sbjct  138  --FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIY  195

Query  251  DPAMGSGGFFVSSDRFIEEHAGEKQYNAAEQKRNISVYGQESNPTTWKLAAMNMAIRGID  310
            DP  GSGG FV S+RF+E H G  +        +I++YGQESNPTTWKLA MN+AIRGID
Sbjct  196  DPCCGSGGMFVQSERFVEKHQGRLD--------DIAIYGQESNPTTWKLAKMNLAIRGID  247

Query  311  FNFGSKNADTLLDDQHPDLRADFVMANPPFNMKEWWNAKLENDVRWKYGTPPQGNANFAW  370
             ++G +NADT+ +D H +L+AD+++ANPPFN  +W + +L +D RW++G PP+GNAN+AW
Sbjct  248  NDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAW  307

Query  371  MQHMIHHLAPKGSMALLLANGSMSSNTNNEGEIRRNLIEADLVECMVALPGQLFTNTQIP  430
            ++HMI  LAP+G+ +++LANGSMS++ ++E EIR+NLIE DLVEC+V+LPGQLF +TQIP
Sbjct  308  IEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIP  367

Query  431  ACIWFLTKDKSGGNGKAHRKGEVLFIDARQIGYMKDRVLRDFSREDIAKIAETFHAWQS-  489
             C+WF++++K G NGK +R  E+LFIDAR+IG M  R L++FS EDI K+A+T+HAW++ 
Sbjct  368  VCLWFISNNK-GQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRGT  426

Query  490  -DKDYEDEAGFCFSATLEDIQKNGFVLTPGRYVGAAEQDEDDEPFAEKMARLTAQLKDQL  548
             DK YED AGFC  A LE++++N ++LTPGRYVG A+ +ED+EPF +KM R+T++L +Q+
Sbjct  427  NDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQF  486

Query  549  EESAKLEAQIKANLGGLGYG  568
              S  LE QI+ +L GLGYG
Sbjct  487  AKSKELEDQIRKSLEGLGYG  506

186) Ser39006_0957 in NC_022268


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  450 bits (1696),  Expect = 8e-128, Method: Compositional matrix adjust.
 Identities = 270/559 (49%), Positives = 400/559 (72%), Gaps = 64/559 (11%)

Query  12   LDNKFWKAADKLRSNMDAANYKHVVLGLIFLKYVSDAFEARQQELLTLFRDIGNPDNIYA  71
            +++K+W+AADKLR++MDAA+YK+V LGLIFLKYVSD+FE + +EL               
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL---------------  53

Query  72   MSRDDFATDEEYARAIQAELEVEDYYIEKNVFWVPKAARWDMLKSKATLPVGTVLWVDKT  131
              +D +A +E+           +D Y+  N+FWVPK ARW+ ++ +A  P          
Sbjct  54   -KQDPYADEED-----------QDEYLAENIFWVPKEARWQYINDNAKKP----------  91

Query  132  GQEVVLRSVSWLIDNALDKIEESNEKLKGILNR-ISQYQLSNDVLIGLINTFSDANFSNP  190
                    ++ +ID+A+  IE+ NE LKG+L +  ++  L ++ L ++I+ F+       
Sbjct  92   -------EIGQIIDKAMIAIENENESLKGVLPKEYARPALDKEKLGDIIDLFT-------  137

Query  191  EYNGQKLQLKSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEMLQPYKGRVYD  250
             ++    + + +D+LG+VYEYF+++FA AEGK++G++YTP SIV L+VEM++PYKGR+YD
Sbjct  138  -FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYD  196

Query  251  PAMGSGGFFVSSDRFIEEHAGEKHYNAAEQKRNISVYGQESNPTTWKLAAMNMAIRGIDF  310
            P  GSGG FV S+RF+E H G        +  +I++YGQESNPTTWKLA MN+AIRGID 
Sbjct  197  PCCGSGGMFVQSERFVEKHQG--------RLDDIAIYGQESNPTTWKLAKMNLAIRGIDN  248

Query  311  NFGKKNADTLLDDQHPDLRADFVMANPPFNMKEWWSAKLENDARWKYGTPPQGNANFAWM  370
            ++G +NADT+ +D H +L+AD+++ANPPFN  +W   +L +D RW++G PP+GNAN+AW+
Sbjct  249  DLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAWI  308

Query  371  QHMIHHLAPKGSMALLLANGSMSSNTNNEGDIRRNLIEADLVECMVALPGQLFTNTQIPA  430
            +HMI  LAP+G+ +++LANGSMS++ ++E +IR+NLIE DLVEC+V+LPGQLF +TQIP 
Sbjct  309  EHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIPV  368

Query  431  CIWLLTKDKTGGNGKAHRKGEVLFIDARQIGFMRDRVLRDFTDKDIEKIADTFHAWQ--E  488
            C+W+++++K G NGK +R  E+LFIDAR+IG M  R L++F+D DI+K+A+T+HAW+  +
Sbjct  369  CLWFISNNK-GQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRGTN  427

Query  489  DKDYHDDAGFCFAATLEDIKKNDFVLTPGRYVGATEQEEDAEPFAEKMARLTQQLKVQLE  548
            DK Y+D AGFC  A LE++K+N+++LTPGRYVG ++ EED EPF +KM R+T +L  Q+ 
Sbjct  428  DKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQFA  487

Query  549  ESAELEKQIKANLGGLGYG  567
             S ELE QI+ +L GLGYG
Sbjct  488  KSKELEDQIRKSLEGLGYG  506

187) Pnap_4777 in NC_008761


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  449 bits (1692),  Expect = 1e-127, Method: Compositional matrix adjust.
 Identities = 270/513 (53%), Positives = 367/513 (72%), Gaps = 24/513 (4%)

Query  8    TLWATADKLRANMDAAEYKHLVLGLIFVKYISDTFaarraeltarltNPadayyygdaaP  67
             LW +ADKLR++MDAAEYK++ LGLIF+KY+SD+F  +  EL                  
Sbjct  12   KLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL-----------------K  54

Query  68   EDIEAELEDRDYYKEVNAFWVPEAARWESLRAAAKQVDIGKRIDDALSLIEAENPTLKGI  127
            +D  A+ ED+D Y   N FWVP  ARW+ +   AK+ +IG+ ID A+  IE EN +LKG+
Sbjct  55   QDPYADEEDQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGV  114

Query  128  LDKRYARAQLPDGKLGELVDLISTIGFGDNPSTARDVLGQVYEYFLGMFASAEGKRGGQF  187
            L K YAR+ L   KLG+++DL+ T+  GD  S  +DVLG+VYEYF++ FASAEGK +G+F
Sbjct  115  LPKEYARPALDKEKLGDIIDLF-TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEF  173

Query  188  YTPASIVKTLVAILGPHSGKVYDPCCGSGGMFVQSEKFIEAHGGKLGDVSIYGQEANPTT  247
            YTP+SIVK LV ++ P  G++YDPCCGSGGMFVQSE+F+E H G+L+D++IYGQE+NPTT
Sbjct  174  YTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTT  233

Query  248  WRLAAMNLAIRGIDFNLGKEPGDTFTRNQHPDLRADFILANPPFNISDWWHGSLMGDARW  307
            W+LA MNLAIRGID +LG   +DTF  + H +L+AD+ILANPPFN SDW +  L++D RW
Sbjct  234  WKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRW  293

Query  308  VHGDPPPGNANYAWLQHMLHHLKPTGRAGIVLANGSMSSSQNSEGQIRaamveadvvevm  367
              G PP GNANYAW++HM+  L P G AG+VLANGSMS+S + E +IR  ++E D+VE +
Sbjct  294  QFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECI  353

Query  368  vaLPGQLFFNTQIPACLWFLVKQKTH-----RKGEVLFIDARKLATMISRVQSEFTDAVI  422
            V+LPGQLF++TQIP CLWF+ ++K +     R  E+LFIDAR ++ M+SR   EF+D  I
Sbjct  354  VTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDI  413

Query  423  ERIAATVAAWRGEADAGEYRDTLGFCRSVKLAEIAQHGHVLTPGRYVGAEAVEDNDEDFA  482
            +++A T  AWRG  D   Y D  GFC+  +L E+ ++  +LTPGRYVG   VE+++E F 
Sbjct  414  QKVAQTYHAWRGTNDKP-YEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFE  472

Query  483  TKMQQLTEKLGEQMARGAELDLLIRQKLGGLGY  515
             KM+++T  L+EQ A++ EL+  IR+ L GLGY
Sbjct  473  QKMERITSELSEQFAKSKELEDQIRKSLEGLGY  505

188) PCC21_032490 in NC_018525


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  449 bits (1693),  Expect = 1e-127, Method: Compositional matrix adjust.
 Identities = 269/559 (49%), Positives = 398/559 (72%), Gaps = 65/559 (11%)

Query  12   LDNKFWKAADKLRANMDAANYKHVVLGLIFLKYVSDAFEARQQDLITLFRDVGNPDNIYA  71
            +++K+W+AADKLR++MDAA+YK+V LGLIFLKYVSD+FE + ++L               
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL---------------  53

Query  72   MSRDGYDSDEEYAQAIVDELEVEDYYAEKNIFWVPKAARWETLKNKAMLPTGTVLWVDET  131
              +D Y  +E+           +D Y   NIFWVPK ARW+ ++++A  P          
Sbjct  54   -KQDPYADEED-----------QDEYLAENIFWVPKEARWQYINDNAKKP----------  91

Query  132  TGQDVKLRSVSWLVDNALDEIEKTNPKLKGILNR-ISQYQLGNEVLTGLINTFSDANFSN  190
                     ++ ++D+A+  IE+ N  LKG+L +  ++  L++E L ++I+ F+      
Sbjct  92   --------EIGQIIDKAMIAIENENESLKGVLPKEYARPALDKEKLGDIIDLFT------  137

Query  191  PEYNGEKLNLKSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEMLQPYNGRVY  250
              ++    + + +D+LG+VYEYF+++FA AEGK++G++YTP SIV L+VEM++PY+GR+Y
Sbjct  138  --FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIY  195

Query  251  DPAMGSGGFFVSSDRFIEEHAGEKQYNAAEQKQKISVYGQESNPTTWKLAAMNMAIRGID  310
            DP  GSGG FV S+RF+E H G        + + I++YGQESNPTTWKLA MN+AIRGID
Sbjct  196  DPCCGSGGMFVQSERFVEKHQG--------RLDDIAIYGQESNPTTWKLAKMNLAIRGID  247

Query  311  FNFGSKNADTLLDDQHPDLRADFVMANPPFNMKEWWSAKLENDVRWKYGTPPQGNANFAW  370
             ++G +NADT+ +D H +L+AD+++ANPPFN  +W   +L +D RW++G PP+GNAN+AW
Sbjct  248  NDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAW  307

Query  371  MQHMVHHLAPKGSMALLLANGSMSSNTNNEGEIRRNLIEADLVECMVALPGQLFTNTQIP  430
            ++HM+  LAP+G+ +++LANGSMS++ ++E EIR+NLIE DLVEC+V+LPGQLF +TQIP
Sbjct  308  IEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIP  367

Query  431  ACIWFLTKDKTGGNGKAHRKGEVLFIDARKIGFMKDRVLRDFSREDIAKIADTFHAWQ--  488
             C+WF++++K G NGK +R  E+LFIDAR IG M  R L++FS EDI K+A+T+HAW+  
Sbjct  368  VCLWFISNNK-GQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRGT  426

Query  489  MDKEYEDEAGFCFSATLEDIQKNDFVLTPGRYVGAAEQEEDDEPFAEKMARLTAQLKDQL  548
             DK YED AGFC  A LE++++N+++LTPGRYVG A+ EED+EPF +KM R+T++L +Q+
Sbjct  427  NDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQF  486

Query  549  EDSAKLEEQIKANLGGLGY  567
              S  LE+QI+ +L GLGY
Sbjct  487  AKSKELEDQIRKSLEGLGY  505

189) Rfer_0032 in NC_007908


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  449 bits (1692),  Expect = 1e-127, Method: Compositional matrix adjust.
 Identities = 261/537 (49%), Positives = 384/537 (72%), Gaps = 40/537 (7%)

Query  11   NLDKQLWAAADRLRAAVNPSEYMHVVLGLVFLKYISDAFKERRLELQAAFQDPANDYYLG  70
             ++ +LW AAD+LR++++++EY +V LGL+FLKY+SD+F E+       +++  +D Y +
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEK-------YEELKQDPYAD  60

Query  71   TDADELIAQELEARDYYTETNVFWVPALARWDFLKDNAKVAIDTVLTVKNGKTFEYKFKG  130
             + ++         +Y +E N+FWVP  ARW++++DNAK +                   
Sbjct  61   EEDQD---------EYLAE-NIFWVPKEARWQYINDNAKKP------------------E  92

Query  131  IGRLLDDALEAVEKDNPKLKGVLDKSYARWRVD-EALPGLIDEFSKIPFNHGALKAKDIL  189
            IG+++D A+ A+E++N  LKGVL K YAR  +D E L ++ID F+ +   +   + +D+L
Sbjct  93   IGQIIDKAMIAIENENESLKGVLPKEYARPALDKEKLGDIIDLFT-FKVGDTESRKQDVL  151

Query  190  GHIYEYFLGEFSIAAGKRGGEFYTPKSIVSVIVEMLEPFEGRVYDPCCGSGGFFVQSERF  249
            G++YEYF++ F+ A GK +GEFYTP SIV ++VEM+EP+ GR+YDPCCGSGG FVQSERF
Sbjct  152  GRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERF  211

Query  250  VLEHGGKIGQLSIYGQEFNPTTWRLASMNMAIRGLDFDFGKEPASTYTRPQHPDLRADFI  309
            V  H G++++++IYGQE NPTTW+LA MN+AIRG+D D+G   A T+    H +L+AD+I
Sbjct  212  VEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYI  271

Query  310  MANPPFNMKAWKEGVKDDDPRWKYGVPPDGNANFAWMQHMIHHLAPHGSMALLLANGSMS  369
            +ANPPFN   W +    DD RW++G+PP GNAN+AW++HMI  LAP+G+ +++LANGSMS
Sbjct  272  LANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMS  331

Query  370  SNTNNEGEIRKALIEADLVECMVALPGQLFTNTQIPACIWFLTrskaerkakrsrHGEVL  429
            ++ ++E EIRK LIE DLVEC+V+LPGQLF +TQIP C+WF++ ++  +++K+ R+ E+L
Sbjct  332  TSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFIS-NNKGQNGKKERENEIL  390

Query  430  FIDARQLGYMKDRVLRDFKPEDLAKVADTFHAWQ--RGVGYADEAGFCKAATLADIGKAD  487
            FIDAR++G M  R L++F  ED+ KVA+T+HAW+   +  Y D AGFCK A L ++ + +
Sbjct  391  FIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNE  450

Query  488  YVLTPGRYVGAAAQEADAEPFEDKMARLTAALGDQFKESARLEAAIRKNLAGLGYEV  544
            Y+LTPGRYVG A  E D EPFE+KM R+T+ L++QF  S  LE  IRK+L GLGY V
Sbjct  451  YILTPGRYVGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

190) hsdM3 in NC_007146


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  449 bits (1691),  Expect = 2e-127, Method: Compositional matrix adjust.
 Identities = 270/544 (50%), Positives = 386/544 (71%), Gaps = 57/544 (10%)

Query  23   DLDEKLWSSADKLRQQLDAANYKHIVLGLIFLKYISDNFTHQQEKIQAELSDAENPLYLD  82
            +++EKLW +ADKLR  +DAA+YK++ LGLIFLKY+SD+F ++ E ++             
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELK-------------  54

Query  83   RTFFDTEEEYQEALTAELENRDYYTADNVFWVPASARWQALQEVSILNTGAELPWGGKFS  142
                  ++ Y +      E++D Y A+N+FWVP  ARWQ +++             +K +
Sbjct  55   ------QDPYADE-----EDQDEYLAENIFWVPKEARWQYIND------------NAKKP  91

Query  143  GVAKLIDDAFDAIEKDNEKLKGVLQRISGYA---VNEDTLRGLIILFSDTNFTRPTYNGE  199
             ++++ID A  AIE++NE LKGVL +   YA   ++ + L ++I LF        T++  
Sbjct  92   EIGQIIDKAMIAIENENESLKGVLPK--EYARPALDKEKLGDIIDLF--------TFKVG  141

Query  200  PVHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEMLEPYSGRVYDPAMGS  259
              +   +D+LG+VYEYF+++FA AEGK +G+++TP SIV L+VEM+EPY GR+YDP  GS
Sbjct  142  DTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGS  201

Query  260  GGFFVQTERFITAHQGNINNVSIYGQEFNPTTWKLAAMNMAIRGIDYDFGKHNADSFTQP  319
            GG FVQ+ERF+  HQG +++++IYGQE NPTTWKLA MN+AIRGID D+G +NAD+F + 
Sbjct  202  GGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRGIDNDLGERNADTFHND  261

Query  320  QHIDKKMDFIMANPPFNISDWWSESLADDPRWAYGTPPKGNANFAWLQHMIYHLSPNGKM  379
             H + K D+I+ANPPFN SDW  E L DD RW +G PPKGNAN+AW++HMI  L+PNG  
Sbjct  262  LHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTA  321

Query  380  ALLLANGSMSSQTNNEGEIRKAIINADLVECMVALPGQLFTNTQIPACIWFLNRN-----  434
            +++LANGSMS+  ++E EIRK +I+ DLVEC+V+LPGQLF +TQIP C+WF++ N     
Sbjct  322  GFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNG  381

Query  435  -KKRKGEVLFIDARQIGYMKDRVLRDFTADDIAKIADTLHTWQKSDG--YEDQAAFCKSA  491
             K R  E+LFIDAR+IG M  R L++F+ +DI K+A+T H+W+ +++  YED A+FCK A
Sbjct  382  KKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRGTNDKPYEDIAGFCKVA  441

Query  492  TLEEIKDNDFVLTPGRYVGTAEQEDDGVPFAEKMQNLTALLKEQFAKSAELEAEIKKNLG  551
             LEE+K+N+++LTPGRYVG A+ E+D  PF +KM+ +T+ L EQFAKS ELE +I+K+L 
Sbjct  442  NLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLE  501

Query  552  GLGY  555
            GLGY
Sbjct  502  GLGY  505

191) CFSAN002050_05885 in NC_021818


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  449 bits (1690),  Expect = 2e-127, Method: Compositional matrix adjust.
 Identities = 269/561 (48%), Positives = 399/561 (72%), Gaps = 65/561 (11%)

Query  11   DLDNKFWKAADKLRANMDAANYKHVVLGLIFLKYVSDAFEARQQELITLFRDVGNPDNIY  70
            ++++K+W+AADKLR++MDAA+YK+V LGLIFLKYVSD+FE + +EL              
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL--------------  53

Query  71   AMSRDDYDSDEDYAQAIVDELEIEDYYTEKNIFWVPKAARWDTLKTKAMLPTGTVLWVDE  130
               +D Y  +ED           +D Y   NIFWVPK ARW+ ++ +A  P         
Sbjct  54   --KQDPYADEED-----------QDEYLAENIFWVPKEARWQYINDNAKKP---------  91

Query  131  TTGQDVKLRSVSWLVDNALDEIEKTNPKLKGILNR-ISQYQLGNEVLTGLINTFSDANFS  189
                      ++ ++D+A+  IE+ N  LKG+L +  ++  L++E L ++I+ F+     
Sbjct  92   ---------EIGQIIDKAMIAIENENESLKGVLPKEYARPALDKEKLGDIIDLFT-----  137

Query  190  NPEYNGEKLSLKSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEMLQPYNGRV  249
               ++      + +D+LG+VYEYF+++FA AEGK++G++YTP SIV L+VEM++PY+GR+
Sbjct  138  ---FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRI  194

Query  250  YDPAMGSGGFFVSSDRFIEEHAGEKQYNAAEQKRNISVYGQESNPTTWKLAAMNMAIRGI  309
            YDP  GSGG FV S+RF+E H G  +        +I++YGQESNPTTWKLA MN+AIRGI
Sbjct  195  YDPCCGSGGMFVQSERFVEKHQGRLD--------DIAIYGQESNPTTWKLAKMNLAIRGI  246

Query  310  DFNFGSKNADTLLDDQHPDLRADFVMANPPFNMKEWWNAKLENDVRWKYGTPPQGNANFA  369
            D ++G +NADT+ +D H +L+AD+++ANPPFN  +W + +L +D RW++G PP+GNAN+A
Sbjct  247  DNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYA  306

Query  370  WMQHMIHHLAPKGSMALLLANGSMSSNTNNEGEIRRNLIEADLVECMVALPGQLFTNTQI  429
            W++HMI  LAP+G+ +++LANGSMS++ ++E EIR+NLIE DLVEC+V+LPGQLF +TQI
Sbjct  307  WIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQI  366

Query  430  PACIWFLTKDKSGGNGKAHRKGEVLFIDARQIGYMKDRVLRDFTREDIARIAETFHAWQ-  488
            P C+WF++++K G NGK +R  E+LFIDAR+IG M  R L++F+ EDI ++A+T+HAW+ 
Sbjct  367  PVCLWFISNNK-GQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRG  425

Query  489  -TDKEYEDEAGFCFSATLEDIQKNDFVLTPGRYVGAAEQDDDDESFAEKMARLTSQLKEQ  547
              DK YED AGFC  A LE++++N+++LTPGRYVG A+ ++D+E+F +KM R+TS+L EQ
Sbjct  426  TNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQ  485

Query  548  LEESAKLEAQIKANLGGLGYD  568
            +  S  LE QI+ +L GLGY+
Sbjct  486  FAKSKELEDQIRKSLEGLGYG  506

192) hsdM3 in NC_014920


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  448 bits (1687),  Expect = 4e-127, Method: Compositional matrix adjust.
 Identities = 271/543 (50%), Positives = 385/543 (71%), Gaps = 57/543 (10%)

Query  54   LDEKLWASADKLRQQLDAANYKHIVLGLIFLKYISDSFTHQQEKIQAELTDPENVLYLDR  113
            ++EKLW +ADKLR  +DAA+YK++ LGLIFLKY+SDSF ++ E ++              
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELK--------------  54

Query  114  TFYDTEEKYQDALTAELENRDYYTADNVFWVPASARWQALQEVSILNTGAELPWGGKFSG  173
                 ++ Y D      E++D Y A+N+FWVP  ARWQ +++             +K + 
Sbjct  55   -----QDPYADE-----EDQDEYLAENIFWVPKEARWQYIND------------NAKKPE  92

Query  174  VAKLIDDAFDAIEKDNEKLKGVLQRISGY---AVNEDTLRGLIILFSDTHFTRPTYNGEP  230
            ++++ID A  AIE++NE LKGVL +   Y   A++ + L ++I LF        T++   
Sbjct  93   IGQIIDKAMIAIENENESLKGVLPK--EYARPALDKEKLGDIIDLF--------TFKVGD  142

Query  231  VHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEMLEPYSGRVYDPAMGSG  290
             +   +D+LG+VYEYF+++FA AEGK +G+++TP SIV L+VEM+EPY GR+YDP  GSG
Sbjct  143  TESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSG  202

Query  291  GFFVQTERFITAHQGNINNMSIYGQEFNPTTWKLAAMNMAIRGIDYDFGKHNADSFTQPQ  350
            G FVQ+ERF+  HQG +++++IYGQE NPTTWKLA MN+AIRGID D+G +NAD+F +  
Sbjct  203  GMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRGIDNDLGERNADTFHNDL  262

Query  351  HIDKKMDFIMANPPFNISDWWSESLADDPRWAYGTPPKGNANFAWLQHMIYHLSPNGKMA  410
            H + K D+I+ANPPFN SDW  E L DD RW +G PPKGNAN+AW++HMI  L+PNG  +
Sbjct  263  HKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAG  322

Query  411  LLLANGSMSSQTNNEGEIHKGIINADLVECMVALPGQLFTNTQIPACIWFLNRN------  464
            ++LANGSMS+  ++E EI+K +I+ DLVEC+V+LPGQLF +TQIP C+WF++ N      
Sbjct  323  FVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGK  382

Query  465  KKRKGEVLFIDARQIGYMKDRVLRDFTADDIAKISDTLHAWQKSDG--YEDQAAFCKSAT  522
            K R  E+LFIDAR+IG M  R L++F+ +DI K+++T HAW+ +++  YED A+FCK A 
Sbjct  383  KERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRGTNDKPYEDIAGFCKVAN  442

Query  523  LEEIKDNDFVLTPGRYVGTAEQEDDGVPFAEKMQNLTALLKEQFAKSAELEAEIKKNLGG  582
            LEE+K+N+++LTPGRYVG A+ E+D  PF +KM+ +T+ L EQFAKS ELE +I+K+L G
Sbjct  443  LEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEG  502

Query  583  LGY  585
            LGY
Sbjct  503  LGY  505

193) ESA_00614 in NC_009778


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  448 bits (1688),  Expect = 4e-127, Method: Compositional matrix adjust.
 Identities = 267/559 (48%), Positives = 397/559 (72%), Gaps = 65/559 (11%)

Query  12   LDNKFWKAADKLRANMDAANYKHVVLGLIFLKYVSDAFEARQQELMTLFRDVGNPDNIYA  71
            +++K+W+AADKLR++MDAA+YK+V LGLIFLKYVSD+FE + +EL               
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELK--------------  54

Query  72   ISRDDYSSDEEYAQALLDELEVEDYYTEKNVFWVPKAARWETLKNKAMLPTGTVLWVDET  131
              +D Y+ +E+           +D Y   N+FWVPK ARW+ ++++A  P          
Sbjct  55   --QDPYADEED-----------QDEYLAENIFWVPKEARWQYINDNAKKP----------  91

Query  132  TGQDVKLRSVSWLVDNALDEIEKTNPKLKGILNR-ISQYQLGNEVLTGLINTFSDANFSN  190
                     ++ ++D+A+  IE+ N  LKG+L +  ++  L++E L ++I+ F+      
Sbjct  92   --------EIGQIIDKAMIAIENENESLKGVLPKEYARPALDKEKLGDIIDLFT------  137

Query  191  PEYNGEKLSLKSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEMLQPYNGRVY  250
              ++      + +D+LG+VYEYF+++FA AEGK++G++YTP SIV L+VEM++PY+GR+Y
Sbjct  138  --FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIY  195

Query  251  DPAMGSGGFFVSSDRFIEEHAGEKHYNAAEQKQKISVYGQESNPTTWRLAAMNMAIRGID  310
            DP  GSGG FV S+RF+E H G        + + I++YGQESNPTTW+LA MN+AIRGID
Sbjct  196  DPCCGSGGMFVQSERFVEKHQG--------RLDDIAIYGQESNPTTWKLAKMNLAIRGID  247

Query  311  FNFGTKNADTLLDDQHPDLRADFVMANPPFNMKEWWSAKLENDVRWKYGTPPQGNANFAW  370
             ++G +NADT+ +D H +L+AD+++ANPPFN  +W   +L +D RW++G PP+GNAN+AW
Sbjct  248  NDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAW  307

Query  371  MQHMIHHLAPKGSMALLLANGSMSSNTNNEGEIRRNLIEADLVECMVALPGQLFTNTQIP  430
            ++HMI  LAP+G+ +++LANGSMS++ ++E EIR+NLIE DLVEC+V+LPGQLF +TQIP
Sbjct  308  IEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIP  367

Query  431  ACIWFLTKDKTGGNGKAHRKGEVLFIDARKIGFMKDRVLRDFTREDIAKIADTFHKWQA-  489
             C+WF++++K G NGK +R  E+LFIDAR IG M  R L++F+ EDI K+A+T+H W++ 
Sbjct  368  VCLWFISNNK-GQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRGT  426

Query  490  -DKDYEDEAGFCFSATLEDIQKNDFVLTPGRYVGAAEQEEDDEPFAEKMARLTAQLKDQL  548
             DK YED AGFC  A LE++++N+++LTPGRYVG A+ EED+EPF +KM R+T++L +Q+
Sbjct  427  NDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQF  486

Query  549  EESAKLEAQIKANLGGLGY  567
              S  LE QI+ +L GLGY
Sbjct  487  AKSKELEDQIRKSLEGLGY  505

194) PARA_15900 in NC_015964


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  448 bits (1686),  Expect = 5e-127, Method: Compositional matrix adjust.
 Identities = 275/544 (51%), Positives = 388/544 (72%), Gaps = 57/544 (10%)

Query  23   DLDEKLWSSADKLRQQLDAANYKHIVLGLIFLKYISDSFTHQQEKIQAELSDPENPLYLD  82
            +++EKLW +ADKLR  +DAA+YK++ LGLIFLKY+SDSF   +EK +    DP       
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSF---EEKYEELKQDP-------  57

Query  83   RTFYDTDEEYQealaaeleNRDYYTADNVFWVPQQARWDEIKAVSILNIGAELPWGGKFS  142
               Y  +E+           +D Y A+N+FWVP++ARW+ I+              +K +
Sbjct  58   ---YADEED-----------QDEYLAENIFWVPKEARWQYIND------------NAKKP  91

Query  143  GVAKLIDDAFDAIEKDNEKLKGVLQRISGYA---VNEDTLRGLIILFSDTHFTRPTYNGE  199
             ++++ID A  AIE++NE LKGVL +   YA   ++ + L ++I LF        T++  
Sbjct  92   EIGQIIDKAMIAIENENESLKGVLPK--EYARPALDKEKLGDIIDLF--------TFKVG  141

Query  200  PVHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEMLEPYSGRVYDPAMGS  259
              +   +D+LG+VYEYF+++FA AEGK +G+++TP SIV L+VEM+EPY GR+YDP  GS
Sbjct  142  DTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGS  201

Query  260  GGFFVQTERFITAHQGNINNVSIYGQEFNPTTWKLAAMNMAIRGIDYDFGKHNADSFTQP  319
            GG FVQ+ERF+  HQG +++++IYGQE NPTTWKLA MN+AIRGID D+G +NAD+F + 
Sbjct  202  GGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRGIDNDLGERNADTFHND  261

Query  320  QHIDKKMDFIMANPPFNISDWWSESLADDPRWAYGTPPKGNANFAWLQHMIYHLSPNGKM  379
             H + K D+I+ANPPFN SDW  E L DD RW +G PPKGNAN+AW++HMI  L+PNG  
Sbjct  262  LHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTA  321

Query  380  ALLLANGSMSSQTNNEGEIRKAIINADLVECMVALPGQLFTNTQIPACIWFLNRNKARKG  439
            +++LANGSMS+  ++E EIRK +I+ DLVEC+V+LPGQLF +TQIP C+WF++ NK+++G
Sbjct  322  GFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNG  381

Query  440  ------EVLFIDARQIGYMKDRVLRDFTADDIAKIADTLHAWQQSDG--YEDQAAFCKSA  491
                  E+LFIDAR+IG M  R L++F+ +DI K+A+T HAW+ +++  YED A+FCK A
Sbjct  382  KKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRGTNDKPYEDIAGFCKVA  441

Query  492  SLEEIASKEYVLTPGRYVGTAEQEDDGVPFAEKMQNLTDLLKEQFAKSAELEAEIKKNLG  551
            +LEE+ ++EY+LTPGRYVG A+ E+D  PF +KM+ +T  L EQFAKS ELE +I+K+L 
Sbjct  442  NLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLE  501

Query  552  GLGY  555
            GLGY
Sbjct  502  GLGY  505

195) Mvan_0034 in NC_008726


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  447 bits (1682),  Expect = 1e-126, Method: Compositional matrix adjust.
 Identities = 260/530 (50%), Positives = 388/530 (74%), Gaps = 32/530 (6%)

Query  13   LLPSTMKELKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDERREAIRTELEAD  72
            LL +T+  + + LW+AADKLRGS+ A++YK+V LGL+FLKYVSD+++E+ E ++ +  AD
Sbjct  2    LLMATI-GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYAD  60

Query  73   GLDAEQIEDLIEDPEEYQGYGVFVVPPGARWKFLAENAKGLPAAGGEPAKNIGQLIDEAM  132
                       ED +EY +  +F VP  ARW+++ +NAK           +IGQ+ID AM
Sbjct  61   E----------EDQDEYLAENIFWVPKEARWQYINDNAK---------KPEIGQIIDKAM  101

Query  133  DAVMKANPTLQGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGDGRARDLMGEVYEYFL  192
             A+ + N +L+G LP+ Y +  +D+ +LG++IDLF       + ++R +D++G VYEYF+
Sbjct  102  IAIENENESLKGVLPKEYARPALDKEKLGDIIDLFTFK--VGDTESRKQDVLGRVYEYFI  159

Query  193  GNFARAEGKRGGEFFTPPSVVKVIVEVLEPSRGRVYDPCCGSGGMFVQTEKFIYEHDGDP  252
            ++FA AEGK +GEF+TP+S+VK++VE++EP +GR+YDPCCGSGGMFVQ+E+F+  H+G  
Sbjct  160  AKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRL  219

Query  253  KEIAVYGQESIEETWRMAKMNLAIHGIDNKGLGARWGDTFARDQHPDVQMDYVLANPPFN  312
             +IA+YGQES   TW++AKMNLAI+GIDN +LG R +DTF  D H +++ DY+LANPPFN
Sbjct  220  DDIAIYGQESNPTTWKLAKMNLAIRGIDN-DLGERNADTFHNDLHKGLKADYILANPPFN  278

Query  313  IKDWARNE--EDARWRFGVPPANNANYAWIQHILYKLASGGKAGVVMAngsmssnsngeg  370
              DW+++   +D RW+FG+PP  NANYAWI+H++ KLA+ G AG V+ANGSMS+++++E 
Sbjct  279  ASDWGQERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDEL  338

Query  371  DIRAQIVEADLVSCMIALPTQLFRSTGIPVCVWFFAKDKTAGKQGSVDRSGQVLFIDARE  430
            +IR +++E DLV C+++LP QLF ST IPVC+WF++++K  G++G  +R  ++LFIDARE
Sbjct  339  EIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDARE  396

Query  431  MGYMVDRAERALSDDDIVKIGDTFHAWRGSASAAAKGVVYQDVPGFCKSATLAEIKAADY  490
            +G MV R+ + +SD+DI K+++T+HAWRG+   +     Y+D++GFCK A L E+K  +Y
Sbjct  397  IGHMVSRTLKEFSDEDIQKVAQTYHAWRGTNDKP-----YEDIAGFCKVANLEEVKNNEY  451

Query  491  ALTPGRYVGAAAVEDDGEPIDEKIARLKTELLAAFDESARLEKVVREQLE  540
             LTPGRYVG A VE+D EP+++K+ R+ +EL   F  S  LE  +R  LE
Sbjct  452  ILTPGRYVGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLE  501

196) MARHY0353 in NC_017067


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  447 bits (1682),  Expect = 1e-126, Method: Compositional matrix adjust.
 Identities = 263/563 (47%), Positives = 402/563 (72%), Gaps = 66/563 (11%)

Query  11   ALDDKLWKAADKLRANLDAANYKHVVLGLIFLKYVSDAfeerqeellerfKDENDDIYYL  70
            ++++KLW+AADKLR+++DAA+YK+V LGLIFLKYVSD+           F +  ++   L
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDS-----------FEEKYEE---L  53

Query  71   PPEDYDGDEDYQQALLEELEILDYYREANVFWVPKPARWSTLKEKAVLPVGTVLWQDDAG  130
              + Y ++ED ++           Y   N+FWVPK ARW  ++++A              
Sbjct  54   KQDPYADEEDQDE-----------YLAENIFWVPKEARWQYINDNA--------------  88

Query  131  NDVKLRSVSWLIDNALEEIEKSNAKLKGILNR-ISQYQLDNDKLLGLINTFSDTSFTKPV  189
               K   ++ +ID+A+  IE+ N  LKG+L +  ++  LD++KL ++I+ F+        
Sbjct  89   ---KKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALDKEKLGDIIDLFT--------  137

Query  190  FEGEKLSLHSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEMLQPYSGRVYDP  249
            F       + +D+LG+VYEYF+++FA AEGK++G++YTP SIV L+VEM++PY GR+YDP
Sbjct  138  FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDP  197

Query  250  AMGSGGFFVSSDKFIEEHASEQHYDASEQKKHISVYGQESNPTTWKLAAMNMAIRGIDFN  309
              GSGG FV S++F+E H +        +  +I++YGQESNPTTWKLA MN+AIRGID +
Sbjct  198  CCGSGGMFVQSERFVEKHQG--------RLDDIAIYGQESNPTTWKLAKMNLAIRGIDND  249

Query  310  FGKKNADTFLDDQHPDLRADFVMANPPFNIKDWWSESLADDVRWKYGTPPKGNANFGWMQ  369
            +G +NADTF +D H +L+AD+++ANPPFN  DW  E L DD RW++G PPKGNAN++W++
Sbjct  250  LGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAWIE  309

Query  370  HMLHHLAPTGSMALLLANGSMSSNTNNEGEIRKRLVEEDLVECMVALPGQLFTNTQIPAC  429
            HM+  LAP G+ +++LANGSMS++ ++E EIRK L+E+DLVEC+V+LPGQLF +TQIP C
Sbjct  310  HMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVC  369

Query  430  IWFLTRDKANGMVRNEKKRDRREEFLFIDARNLGFMRDRVLRDFTNDDIAKITDTFHAWQ  489
            +WF++ +K+     ++ K++R +E+LFIDAR++G M  R L++F+++DI K+++T+HAW+
Sbjct  370  LWFISNNKG-----QNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWR  424

Query  490  --KGKGYEDIAGFCKSASLDEIKKHDFVLTPGRYVGAQEQEDDGEPFAEKMARLTGQLRE  547
              ++K YEDIAGFCK A+L+E+K+++++LTPGRYVG  + E+D EPF +KM R+T++L E
Sbjct  425  GTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSE  484

Query  548  QFAESDRLEGEIKRNIGGLGYVI  570
            QFA S  LE++I++++ GLGY +
Sbjct  485  QFAKSKELEDQIRKSLEGLGYGV  507

197) CDBH8_2312 in NC_016800


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  447 bits (1684),  Expect = 6e-127, Method: Compositional matrix adjust.
 Identities = 257/523 (50%), Positives = 388/523 (75%), Gaps = 26/523 (4%)

Query  14   TSKEIKDTLWKSADKLRGSMDASQYKDVALGLVFLKYVSDSFEERQKEIRAELEGKGFDE  73
            ++  + + LW++ADKLRGSMDA++YK+VALGL+FLKYVSDSFEE+  E++ +     + +
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQD----PYAD  60

Query  74   EDILEDLADVDAYTSENVFWVASNARWDFLKKYSKGMELEGKHKSIGKLIDEAMQQLMTD  133
            E+      D D Y +EN+FWV+ +ARW++++        ++K   IG++ID AM  +  +
Sbjct  61   EE------DQDEYLAENIFWVPKEARWQYIND-------NAKKPEIGQIIDKAMIAIENE  107

Query  134  NESLLGTLPQIYGKDNIDQRRLGELVDLFSSTYFASTKDKKARDLLGEVYEYFLDKFAKA  193
            NESL G LP+ Y++  +D+ +LG+++DLF  T+  +  + + +D+LG VYEYF+ KFA A
Sbjct  108  NESLKGVLPKEYARPALDKEKLGDIIDLF--TFKVGDTESRKQDVLGRVYEYFIAKFASA  165

Query  194  EGKRGGEFYTPQPVVRTLVEILEPTEGRVYDPCCGSGGMFVQAEKFLEATKRDRSNIAVY  253
            EGK +GEFYTP ++V+ LVE++EP  GR+YDPCCGSGGMFVQ+E+F+E  +    +IA+Y
Sbjct  166  EGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIY  225

Query  254  GQELNERTWRMAKMNLAIHAISSSGLGERWGDTFARDIHAGTKMDYIMANPPFNIKDWIC  313
            GQE N  TW++AKMNLAI++I  ++LGER +DTF  D+H G K DYI+ANPPFN  DW  
Sbjct  226  GQESNPTTWKLAKMNLAIRGI-DNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQ  284

Query  314  NE--EDARWKYGVPPAKNANFAWMQHIISKLKDHGEAGVVMANGTMTSQSSGEGEIRKNM  371
            +   +D RW++G+PP  NAN+AW++H+ISKL  +G AG V+ANG+M++ + +E EIRKN+
Sbjct  285  ERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNL  344

Query  372  VEDDVVSCVIALPAQLFRGTGIPVCVWFFAKDKSAGAGGSVDRRGEVLLIDARQLGHMID  431
            +E+D+V C+++LP+QLF +T IPVC+WF++++K  G  G  +R  E+L+IDAR++GHM+ 
Sbjct  345  IEQDLVECIVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMVS  402

Query  432  RTERAFSDEDIAKIANAFRTWRGRKSADGEYEDEAGFCKSATIEEIREAGYALTPGRYVG  491
            RT + FSDEDI K+A+++++WRG  + D  YED AGFCK A +EE+++  Y LTPGRYVG
Sbjct  403  RTLKEFSDEDIQKVAQTYHAWRG--TNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVG  460

Query  492  MpeaeeddepidekiaRLTAELTAALDESARLDAVVREQLGRL  534
            +++ EED+EP+++K+ R+T+EL+  +  S  L+  +R  L  L
Sbjct  461  LADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

198) hsdM1 in NC_022356


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  447 bits (1684),  Expect = 6e-127, Method: Compositional matrix adjust.
 Identities = 270/548 (50%), Positives = 385/548 (71%), Gaps = 62/548 (11%)

Query  39   LDEKLWSSADKLRQQLDAANYKHIVLGLIFLKYISDNFTHQQEKIQAELSTPENPLYLDR  98
            ++EKLW +ADKLR  +DAA+YK++ LGLIFLKY+SD+F ++ E ++              
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELK--------------  54

Query  99   TFFDTEEEYQEALTAELENRDYYTADNVFWVPASARWQALQEVSILNTGAELPWNIGKER  158
                 ++ Y +      E++D Y A+N+FWVP  ARWQ +                 ++ 
Sbjct  55   -----QDPYADE-----EDQDEYLAENIFWVPKEARWQYI-----------------NDN  87

Query  159  GKFSGVAKLIDDAFDAIEKDNEKLKGVLQRISGY---AVNEDTLRGLIILFSDTNFTRPT  215
            +K + ++++ID A  AIE++NE LKGVL +   Y   A++ + L ++I LF        T
Sbjct  88   AKKPEIGQIIDKAMIAIENENESLKGVLPK--EYARPALDKEKLGDIIDLF--------T  137

Query  216  YNGEPVHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEMLEPYSGRVYDP  275
            ++    +   +D+LG+VYEYF+++FA AEGK +G+++TP SIV L+VEM+EPY GR+YDP
Sbjct  138  FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDP  197

Query  276  AMGSGGFFVQTERFISAHQGNINNVSIYGQEFNPTTWKLAAMNMAIRGIDYDFGKHNADS  335
              GSGG FVQ+ERF+  HQG +++++IYGQE NPTTWKLA MN+AIRGID D+G +NAD+
Sbjct  198  CCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRGIDNDLGERNADT  257

Query  336  FTQPQHIDKKMDFIMANPPFNISDWWSESLADDPRWAYGTPPKGNANFAWLQHMIYHLSP  395
            F +  H + K D+I+ANPPFN SDW  E L DD RW +G PPKGNAN+AW++HMI  L+P
Sbjct  258  FHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAWIEHMISKLAP  317

Query  396  NGKMALLLANGSMSSQTNNEGEIRKAIINADLVECMVALPGQLFTNTQIPACIWFLNRN-  454
            NG  +++LANGSMS+  ++E EIRK +I+ DLVEC+V+LPGQLF +TQIP C+WF++ N 
Sbjct  318  NGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNK  377

Query  455  -----KKRKGEVLFIDARQIGYMKDRVLRDFTADDIAKIANTLHAWQKSDG--YEDQAAF  507
                 K R  E+LFIDAR+IG M  R L++F+ +DI K+A+T HAW+ +++  YED A+F
Sbjct  378  GQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRGTNDKPYEDIAGF  437

Query  508  CKSTTLEEIKDNDFVLTPGRYVGTAEQEDDGVPFAEKMQNLTALLKEQFAKSAELEAEIK  567
            CK + LEE+K+N+++LTPGRYVG A+ E+D  PF +KM+ +T+ L EQFAKS ELE +I+
Sbjct  438  CKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIR  497

Query  568  KNLGGLGY  575
            K+L GLGY
Sbjct  498  KSLEGLGY  505

199) hsdM in NC_017080


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  447 bits (1685),  Expect = 6e-127, Method: Compositional matrix adjust.
 Identities = 263/532 (50%), Positives = 380/532 (72%), Gaps = 47/532 (8%)

Query  24   RNNLDAAQYKHAVLGLIFLKYVSDAFDARRERVLADLRDPDSESFYPDATEEDLHAELED  83
            R ++DAA+YK+  LGLIFLKYVSD+F+ +      +L+             +D  A+ ED
Sbjct  21   RGSMDAAEYKNVALGLIFLKYVSDSFEEK----YEELK-------------QDPYADEED  63

Query  84   RDHYTAANTFWVPPLARWQNLQSWAKLPPQTTVEVKNGKTEKYTIKSTALLIDDALAAVE  143
            +D+Y A N FWVP  ARWQ ++  AK P                    + +ID A+ A+E
Sbjct  64   QDEYLAENIFWVPKEARWQYINDNAKKP------------------EIGQIIDKAMIAIE  105

Query  144  HENEPLKNVLARDTYARLQLDPANLRGLIDLVAGIPFTHDRLQAR--DILGHVYEYFLGQ  201
            +ENE+LK VL+++ YAR  LD  +L ++IDL   + F  +  ++R  D+LG+VYEYF+++
Sbjct  106  NENESLKGVLPKE-YARPALDKEKLGDIIDL---FTFKVGDTESRKQDVLGRVYEYFIAK  161

Query  202  FALAEGKKGGQYFTPKSIVGLIVEMLQPYWGRVYDPAMGSGGFFVEIEKHVERAYDERTH  261
            FA AEGK++G+++TP SIV L+VEM++PY GR+YDP  GSGG FV+ E+     + E+ +
Sbjct  162  FASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSER-----FVEKHQ  216

Query  262  GASGGISVYGQESNPTTWRLAAMNMAIRGIDFNFGKTWANSFTQDQHPDLRADFVMANPP  321
            G  ++I++YGQESNPTTW+LA MN+AIRGID ++G   A++F +D H +L+AD+++ANPP
Sbjct  217  GRLDDIAIYGQESNPTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPP  276

Query  322  FNVSDWWDAKLADDPRWTHGTPPKGNANFAWVQHMLHHLAPTGSMALLLANGSMSGTSGG  381
            FN SDW + +L DD RW  G PPKGNAN+AW++HM+  LAP G+ +++LANGSMS ++ +
Sbjct  277  FNASDWGQERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKD  336

Query  382  EGDIRRALVEADLVECMVALPGQLFTNTQIPACIWFLTKDKAARNGKRDRRGEVLFLDAR  441
            E +IR+ L+E DLVEC+V+LPGQLF +TQIP C+WF++++K ++NGK++R  E+LF+DAR
Sbjct  337  ELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNK-GQNGKKERENEILFIDAR  395

Query  442  GVGYMKDRVLRDFTREDIQKLAGTFHAWQGLGDDEYADIPGFCKSATLAEIAAQGFVLTP  501
             +G M  R L++F+ EDIQK+A T+HAW+G  D  Y DI+GFCK A L E+  + ++LTP
Sbjct  396  EIGHMVSRTLKEFSDEDIQKVAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTP  455

Query  502  GRYVGVAAAEDDGEPFAEKMARLTAELSGQFEESAALEAKIRRNLEGVGYEV  553
            GRYVG+A  E+D EPF +KM R+T+ELS QF  S  LE +IR++LEG+GY V
Sbjct  456  GRYVGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

200) Shewana3_4240 in NC_008573


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  447 bits (1685),  Expect = 6e-127, Method: Compositional matrix adjust.
 Identities = 264/557 (48%), Positives = 394/557 (71%), Gaps = 57/557 (10%)

Query  11   DLEKKLWNAADKLRATLDASQYKHAVLGLIFVKYVSDAFSMRQEEIKADLTNPEHEYYLD  70
            ++E KLW+AADKLR+++DA++YK+  LGLIF+KYVSD+F  + EE+K D    E++    
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEED----  63

Query  71   PADFSedelaeeiaaeleVRDFYTEKNVFWLPTESRWKFLQDNGPMVIGGADLVIDGKTK  130
                               +D Y   N+FW+P E+RW++++DN+                
Sbjct  64   -------------------QDEYLAENIFWVPKEARWQYINDNA----------------  88

Query  131  KITSVGHLIDNALEGIERDNQKLKGVLNKHYASLKIDQAKLNELINLIATIPFNHKSLNS  190
            K   +G++ID+A+ +IE +N+ LKGVL K+YA   +D+ KL ++I+L+ T+   +     
Sbjct  89   KKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALDKEKLGDIIDLF-TFKVGDTESRK  147

Query  191  KDILGHIYEYFLGQFALAEGKKGGQFYTPASIVSLIVEMIEPFEGRVYDPAMGSGGFFVQ  250
            +D+LG++YEYF+++FA AEGK++G+FYTP+SIV L+VEMIEP+ GR+YDP  GSGG FVQ
Sbjct  148  QDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQ  207

Query  251  SEKFIERRANQKEIDPLTQKQRISIYGQEYNYTTWQLAAMNMAIRGLDYDFGKEPASTYT  310
            SE+F+E++  + +         I+IYGQE N TTW+LA MN+AIRG+D D+G   A T+ 
Sbjct  208  SERFVEKHQGRLD--------DIAIYGQESNPTTWKLAKMNLAIRGIDNDLGERNADTFH  259

Query  311  NDQHPDLRADFIMANPPFNMKEWNTGVDDNDPRWVYGTPPSGNANFAWMQHMLYHLAPDG  370
            ND H +L+AD+I+ANPPFN  +W      +D RW +G PP GNAN+AW++HM+  LAP+G
Sbjct  260  NDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNG  319

Query  371  SQALLLANGSMSSTTNNEGEIRAALVENDLVECMVALPGQLFTNTQIPACIWFLAKNKKA  430
            + +++LANGSMS++ ++E EIR  L+E+DLVEC+V+LPGQLF +TQIP C+WF+++NK  
Sbjct  320  TAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNK--  377

Query  431  RTDKSGRKLRDRKGEVLFIDARNLGYMKDRVLRDFTQDDIQKVADLYHAWKTGAEVNGIA  490
              +++G+K  +R  E+LFIDAR++G M  R L++F+++DIQKVA+ YHAW+   +    +
Sbjct  378  --GQNGKK--ERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRGTND---KP  430

Query  491  YEDQAGFCKSATLEEIKKHDFVLTPGRYVGATEELDDGIPFGEKMATLTSKLSDQFAESA  550
            YED AGFCK A LEE+K+++++LTPGRYVG ++  +D  PF +KM  +TS LS+QFA S 
Sbjct  431  YEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQFAKSK  490

Query  551  TLEAEIKKNLAGLGYDL  567
             LE +I+K+L GLGY++
Sbjct  491  ELEDQIRKSLEGLGYGV  507

201) CGSHiGG_01525 in NC_009567


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  447 bits (1684),  Expect = 7e-127, Method: Compositional matrix adjust.
 Identities = 273/543 (51%), Positives = 384/543 (71%), Gaps = 57/543 (10%)

Query  26   LDEKLWASADKLRQQLDAANYKHIVLGLIFLKYISDSFTHQQEKIQAELSTPENPLYLDR  85
            ++EKLW +ADKLR  +DAA+YK++ LGLIFLKY+SDSF ++ E ++              
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELK--------------  54

Query  86   TFFDTEEEYQEALTAELENRDYYTADNVFWVPVSARWQALQEVSILNTGAELPWGGKFSG  145
                 ++ Y +      E++D Y A+N+FWVP  ARWQ +++             +K + 
Sbjct  55   -----QDPYADE-----EDQDEYLAENIFWVPKEARWQYIND------------NAKKPE  92

Query  146  VAKLIDDAFDAIEKDNEKLKGVLQRISGY---AVNEDTLRGLIILFSDTNFTRPTYNGEP  202
            ++++ID A  AIE++NE LKGVL +   Y   A++ + L ++I LF        T++   
Sbjct  93   IGQIIDKAMIAIENENESLKGVLPK--EYARPALDKEKLGDIIDLF--------TFKVGD  142

Query  203  VHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEMLEPYSGRVYDPAMGSG  262
             +   +D+LG+VYEYF+++FA AEGK +G+++TP SIV L+VEM+EPY GR+YDP  GSG
Sbjct  143  TESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSG  202

Query  263  GFFVQTERFITAHQGNINNVSIYGQEFNPTTWKLAAMNMAIRGIDYDFGKYNADSFTQPQ  322
            G FVQ+ERF+  HQG +++++IYGQE NPTTWKLA MN+AIRGID D+G  NAD+F +  
Sbjct  203  GMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRGIDNDLGERNADTFHNDL  262

Query  323  HIDKKMDFIMANPPFNISDWWSESLADDPRWAYGTPPKGNANYAWIQHMIYHLSPNGKMA  382
            H + K D+I+ANPPFN SDW  E L DD RW +G PPKGNANYAWI+HMI  L+PNG  +
Sbjct  263  HKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAG  322

Query  383  LLLANGSMSSQTNNEGEIRKAIINADLIECMVALPGQLFTNTQIPACIWFL------NCN  436
            ++LANGSMS+  ++E EIRK +I+ DL+EC+V+LPGQLF +TQIP C+WF+      N +
Sbjct  323  FVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGK  382

Query  437  KKRKGEVLFIDARQIGYMKDRVLRDFTADDIAKIANTLHAWQTSDG--YEDQAAFCKSAT  494
            K R  E+LFIDAR+IG M  R L++F+ +DI K+A+T HAW+ +++  YED A+FCK A 
Sbjct  383  KERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRGTNDKPYEDIAGFCKVAN  442

Query  495  LEEIKDNDFVLTPGRYVGTAEQEDDGVPFAEKMQNLTALLKEQFAKSAELEAEIKKNLGG  554
            LEE+K+N+++LTPGRYVG A+ E+D  PF +KM+ +T+ L EQFAKS ELE +I+K+L G
Sbjct  443  LEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEG  502

Query  555  LGY  557
            LGY
Sbjct  503  LGY  505

202) DIP2314 in NC_002935


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  447 bits (1683),  Expect = 7e-127, Method: Compositional matrix adjust.
 Identities = 257/523 (50%), Positives = 388/523 (75%), Gaps = 26/523 (4%)

Query  14   TSKEIKDTLWKSADKLRGSMDASQYKDVALGLVFLKYVSDSFEERQKEIRAELEGKGFDE  73
            ++  + + LW++ADKLRGSMDA++YK+VALGL+FLKYVSDSFEE+  E++ +     + +
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQD----PYAD  60

Query  74   EYILEDLADVDAYTSENVFWVASNARWDFLKKYSKGMDLEGKHKSIGKLIDEAMQQLMAD  133
            E       D D Y +EN+FWV+ +ARW++++        ++K   IG++ID AM  +  +
Sbjct  61   E------EDQDEYLAENIFWVPKEARWQYIND-------NAKKPEIGQIIDKAMIAIENE  107

Query  134  NESLLGTLPQIYGKDNIDQRRLGELVDLFSSTYFASTKDKKARDLLGEVYEYFLDKFAKA  193
            NESL G LP+ Y++  +D+ +LG+++DLF  T+  +  + + +D+LG VYEYF+ KFA A
Sbjct  108  NESLKGVLPKEYARPALDKEKLGDIIDLF--TFKVGDTESRKQDVLGRVYEYFIAKFASA  165

Query  194  EGKRGGEFYTPQPVVRTLVEILEPTEGRVYDPCCGSGGMFVQAEKFLEVTKRDRSNIAVY  253
            EGK +GEFYTP ++V+ LVE++EP  GR+YDPCCGSGGMFVQ+E+F+E  +    +IA+Y
Sbjct  166  EGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIY  225

Query  254  GQELNERTWRMAKMNLAIHAISSSGLGERWGDTFARDIHAGTKMDYIMANPPFNIKDWIR  313
            GQE N  TW++AKMNLAI++I  ++LGER +DTF  D+H G K DYI+ANPPFN  DW +
Sbjct  226  GQESNPTTWKLAKMNLAIRGI-DNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQ  284

Query  314  NE--EDARWKYGVPPAKNANFAWIQHIISKLKDHGEAGVVMANGTMTSQSSGEGEIRKNM  371
            +   +D RW++G+PP  NAN+AWI+H+ISKL  +G AG V+ANG+M++ + +E EIRKN+
Sbjct  285  ERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNL  344

Query  372  VEDDVVSCVIALPAQLFRGTGIPVCVWFFAKDKSAGVGGSVDRRGEVLLIDARQLGHMID  431
            +E+D+V C+++LP+QLF +T IPVC+WF++++K  G  G  +R  E+L+IDAR++GHM+ 
Sbjct  345  IEQDLVECIVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMVS  402

Query  432  RTERAFSDEDITKIANAFRTWRGRKSAEGEYEDEAGFCKSATIEEIREAGYALTPGRYVG  491
            RT + FSDEDI K+A+++++WRG  + +  YED AGFCK A +EE+++  Y LTPGRYVG
Sbjct  403  RTLKEFSDEDIQKVAQTYHAWRG--TNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVG  460

Query  492  MpeaeeddepidekiaRLTAELTAALDESARLDAVVREQLGRL  534
            +++ EED+EP+++K+ R+T+EL+  +  S  L+  +R  L  L
Sbjct  461  LADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

203) Nwat_1303 in NC_014315


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  447 bits (1683),  Expect = 8e-127, Method: Compositional matrix adjust.
 Identities = 264/563 (47%), Positives = 398/563 (71%), Gaps = 66/563 (11%)

Query  11   ALDDKLWKAADKLRANLDAANYKHVVLGLIFLKYVSDAFEERQEALLERFKDENDDIYYL  70
            ++++KLW+AADKLR+++DAA+YK+V LGLIFLKYVSD+FEE+ E L              
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL--------------  53

Query  71   PREDFDSDEDYQQALQEELEILDYYREANVFWVPKAARWSTLKEKAVLPVGTVLWQDDTG  130
             ++ +  +ED     Q+E      Y   N+FWVPK ARW  ++++A  P        + G
Sbjct  54   KQDPYADEED-----QDE------YLAENIFWVPKEARWQYINDNAKKP--------EIG  94

Query  131  HDVKLRSVSWLMDNALEAIEKSNAKLKGILNR-ISQYQLENDKLLGLINTFSDTSFTKPM  189
            +         ++D+A+ AIE+ N  LKG+L +  ++  L+++KL ++I+ F+        
Sbjct  95   Q---------IIDKAMIAIENENESLKGVLPKEYARPALDKEKLGDIIDLFT--------  137

Query  190  FDGEQLDLHSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVAMLEPYSGRVYDP  249
            F   + + + +D+LG+VYEYF+++FA AEGK++G++YTP SIV L+V M+EPY GR+YDP
Sbjct  138  FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDP  197

Query  250  AMGSGGFFVSSDKFIEEHAKEHHYDPSEQKKHISVYGQESNPTTWRLAAMNMAIRGIDFN  309
              GSGG FV S++F+E H          +  +I++YGQESNPTTW+LA MN+AIRGID +
Sbjct  198  CCGSGGMFVQSERFVEKHQ--------GRLDDIAIYGQESNPTTWKLAKMNLAIRGIDND  249

Query  310  FGKKNADTFLDDQHPDLRADFVMANPPFNMKDWWSESLADDARWQYGTPPKGNANFAWMQ  369
            +G +NADTF +D H +L+AD+++ANPPFN  DW  E L DD RWQ+G PPKGNAN+AW++
Sbjct  250  LGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAWIE  309

Query  370  HMIHHLAPTGSMALLLANGSMSSHTNNEGGIRQRLVEEDLVECMAALPGQLFTNTQIPAC  429
            HMI  LAP G+ +++LANGSMS+  ++E  IR+ L+E+DLVEC+ +LPGQLF +TQIP C
Sbjct  310  HMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVC  369

Query  430  IWFLTRDKANGLVRNEKKRDRREEFLFIDARNLGFMRDRVLRDFTVDDIAKIADTFHAWQ  489
            +WF++ +K+     ++ K++R +E+LFIDAR++G M  R L++F+ +DI K+A+T+HAW+
Sbjct  370  LWFISNNKG-----QNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWR  424

Query  490  --RGEHYEDVAGFCKSASLDEIKKHDFVLTPGRYVGAREQEDDGEPFAEKMARLTGQLQE  547
               +  YED+AGFCK A+L+E+K+++++LTPGRYVG  + E+D EPF +KM R+T++L E
Sbjct  425  GTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSE  484

Query  548  QFVESERLEAEIKRNLGRLGYDL  570
            QF  S  LE +I+++L  LGY++
Sbjct  485  QFAKSKELEDQIRKSLEGLGYGV  507

204) Achl_1096 in NC_011886


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  446 bits (1681),  Expect = 1e-126, Method: Compositional matrix adjust.
 Identities = 269/524 (52%), Positives = 371/524 (71%), Gaps = 34/524 (6%)

Query  17   LKDTLWKAADKLRGSMDASQYKDVILGLVFLKYVSDAFDERRNQIQAELEADGLNEEQIA  76
            + + LW+AADKLRGSMDA++YK+V LGL+FLKYVSD+F+E+ +    EL  D   +E   
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYE----ELKQDPYADE---  61

Query  77   QLIDDVDEYTSRGVFWVSGRARWSYLAENAKGLPAMDGAAPKSIGLLIDDAMDLIMTDNK  136
               +D DEY +  +FWV+  ARW Y+ +NAK            IG +ID AM  I  +N 
Sbjct  62   ---EDQDEYLAENIFWVPKEARWQYINDNAK---------KPEIGQIIDKAMIAIENENE  109

Query  137  SLAATLPRIYNRDNVDQRRLGELLDLFNSARFTGQGASKARDLLGEVYEYFLEKFAKAEG  196
            SL + LP+ Y R  +D+ +LG+++DLF      G+  S+ +D+LG VYEYF+ KFA AEG
Sbjct  110  SLKGVLPKEYARPALDKEKLGDIIDLFTFK--VGDTESRKQDVLGRVYEYFIAKFASAEG  167

Query  197  KRGGEFYTPAGVVRVLVEVLEPHRGRVYDPCCGSGGMFVQAEKFLEAHNMEGSDISVYGQ  256
            K +GEFYTP+++V++LVE++EP +GR+YDPCCGSGGMFVQ+E+F+E H+    DI++YGQ
Sbjct  168  KNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQ  227

Query  257  ELNERTWRMAKMNLAIHGLNANLAARWGDTFARDQHPELTGNTGADFIMANPPFNIKVWS  316
            E N  TW++AKMNLAI+G++ +L+ R +DTF  D H  L     AD+I+ANPPFN   W+
Sbjct  228  ESNPTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLK----ADYILANPPFNASDWG  283

Query  317  RSE--SDPRWKYGVPPAGNANYAWIQHIISKLAPGGSAGVVMAngsmssnsggegeIRAQ  374
            +     D RW++G+PP GNANYAWI+H+ISKLAP G+AG V+ANGSMS+++ +E EIR +
Sbjct  284  QERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKN  343

Query  375  LVEADLVSCMVALPTQLFRSTGIPVCTWFFAKDKTAGKKGSIDRTGQVLFIDARNLGYMV  434
            L+E DLV C+V+LP QLF ST IPVC WF++++K  G++G  +R  ++LFIDAR++G MV
Sbjct  344  LIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMV  401

Query  435  DRAERALSDEDITKIANTYHAWRGTASAVEAGLTYEDEAGFCYSASLAEIKAADYALTPG  494
             R+ + +SDEDI K+A+TYHAWRGT         YED AGFC  A+L E+K  +Y LTPG
Sbjct  402  SRTLKEFSDEDIQKVAQTYHAWRGTNDK-----PYEDIAGFCKVANLEEVKNNEYILTPG  456

Query  495  RYVGAVDVEDDGEPIEEKIARLSKELFAQFEESERRARLVREQL  538
            RYVG  DVE+D EP+E+K+ R++ EL  QF  S      +R  L
Sbjct  457  RYVGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSL  500

205) Tola_1220 in NC_012691


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  446 bits (1681),  Expect = 1e-126, Method: Compositional matrix adjust.
 Identities = 270/557 (49%), Positives = 393/557 (71%), Gaps = 57/557 (10%)

Query  11   DLEKKLWNAADKLRATLDAAQYKHAVLGLIFVKYVSDAFSIRQDEIKADLANPEHEYYLD  70
            ++E KLW+AADKLR+++DAA+YK+  LGLIF+KYVSD+F  + +E+K D        Y D
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDP-------YAD  60

Query  71   PDDFTPeelaeeiaieleQRDYYTEKNVFWLPTESRWKFLQDNGPLVIGGADLVIDSKPK  130
             +D               Q +Y +E N+FW+P E+RW++++DN+                
Sbjct  61   EED---------------QDEYLAE-NIFWVPKEARWQYINDNA----------------  88

Query  131  KITSVGHLIDNALEGIERDNPKLKGVLNKHYAALKIDQAKLNELINLIATIPFTHKSLNS  190
            K   +G++ID+A+ +IE +N  LKGVL K+YA   +D+ KL ++I+L+ T+   +     
Sbjct  89   KKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALDKEKLGDIIDLF-TFKVGDTESRK  147

Query  191  KDILGHIYEYFLGEFALAEGKKGGQFYTPASIVTLIVEMIEPFEGRVYDPAMGSGGFFVQ  250
            +D+LG++YEYF++ FA AEGK++G+FYTP+SIV L+VEMIEP+ GR+YDP  GSGG FVQ
Sbjct  148  QDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQ  207

Query  251  SEKFIERYAGKNNIDPLTQKQKISIYGQEYNYTTWQLAAMNMAIRGLDYDFGKEPASTYT  310
            SE+F+E+  G+ +         I+IYGQE N TTW+LA MN+AIRG+D D+G   A T+ 
Sbjct  208  SERFVEKHQGRLD--------DIAIYGQESNPTTWKLAKMNLAIRGIDNDLGERNADTFH  259

Query  311  NDQHPDLRADFIMANPPFNMKEWDAGVDDNDPRWKYGKPPSGNANFAWLQHMLYHLAPNG  370
            ND H +L+AD+I+ANPPFN  +W+     +D RW++G PP GNAN+AW++HM+  LAPNG
Sbjct  260  NDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNG  319

Query  371  SQALLLANGSMSSTTNNEGEIRKNLVTNDLIECMVALPGQLFTNTQIPACIWFLTNNKGE  430
            + +++LANGSMS++ ++E EIRKNL+ +DL+EC+V+LPGQLF +TQIP C+WF++NNKG+
Sbjct  320  TAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQ  379

Query  431  RTDKAGRKLRNRKGEVLFIDARQLGYMKDRVLRDFTMDDIQKVADIFHAWKMGEAVNGVA  490
               K      +R  E+LFIDAR++G M  R L++F+ +DIQKVA+ +HAW+   + N+ +
Sbjct  380  NGKK------ERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWR---GTNDKP  430

Query  491  YEDQAGFCKSASLEEITKHDFVLTPGRYVGAAVEEDDGIPFTEKMATLTEKLSEQFAESA  550
            YED AGFCK A+LEE+ +++++LTPGRYVG A  E+D  PF +KM  +T  LSEQFA S 
Sbjct  431  YEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQFAKSK  490

Query  551  KLEAEIKQKLVGLGYEL  567
             LE +I++ L GLGY +
Sbjct  491  ELEDQIRKSLEGLGYGV  507

206) VEJY3_11790 in NC_016613


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  446 bits (1680),  Expect = 1e-126, Method: Compositional matrix adjust.
 Identities = 266/557 (48%), Positives = 395/557 (71%), Gaps = 59/557 (10%)

Query  12   LESKLWTAADKLRASLDASQYKHAVLGLIFVKYVSDAFTLRQEELKQD-FANPDHEYFLD  70
            +E KLW AADKLR+S+DA++YK+  LGLIF+KYVSD+F  + EELKQD +A+ +++    
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ----  64

Query  71   PEGYTaeeleqeiaieleqRDYYKEKNVFWLPTESRWKFLQDNGPMVIGGADLVIDDKTK  130
                                D Y   N+FW+P E+RW++++DN+                
Sbjct  65   --------------------DEYLAENIFWVPKEARWQYINDNA----------------  88

Query  131  KITSVGHLIDNALEGIERDNQKLKGVLNKHYASLKIDQAKLNELINLIATIPFNHKSLNS  190
            K   +G++ID+A+ +IE +N+ LKGVL K+YA   +D+ KL ++I+L+ T+   +     
Sbjct  89   KKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALDKEKLGDIIDLF-TFKVGDTESRK  147

Query  191  KDILGHIYEYFLGQFALAEGKKGGQFYTPASIVSLIVEMIEPFEGRVYDPAMGSGGFFVQ  250
            +D+LG++YEYF+++FA AEGK++G+FYTP+SIV L+VEMIEP+ GR+YDP  GSGG FVQ
Sbjct  148  QDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQ  207

Query  251  SEKFIERRANQKEIDPLTQKQRISIYGQEYNYTTWQLAAMNMAIRGLDYDFGKEPASTYT  310
            SE+F+E++  + +         I+IYGQE N TTW+LA MN+AIRG+D D+G   A T+ 
Sbjct  208  SERFVEKHQGRLD--------DIAIYGQESNPTTWKLAKMNLAIRGIDNDLGERNADTFH  259

Query  311  NDQHPDLRADFIMANPPFNMKEWNTGVDDNDPRWVYGKPPSGNANFAWMQHMLYHLAPDG  370
            ND H +L+AD+I+ANPPFN  +W      +D RW +G PP GNAN+AW++HM+  LAP+G
Sbjct  260  NDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNG  319

Query  371  SQALLLANGSMSSTTNNEGEVRAALVENDLVECMVALPGQLFTNTQIPACIWFLTKNKKA  430
            + +++LANGSMS++ ++E E+R  L+E+DLVEC+V+LPGQLF +TQIP C+WF+++NK  
Sbjct  320  TAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNK--  377

Query  431  RTDKSGRKLRDRKGEVLFIDARNLGYMKDRVLRDFTQDDIQKVADLYHAWKTGEEVNGVA  490
              +++G+K  +R  E+LFIDAR++G M  R L++F+++DIQKVA+ YHAW+  ++    +
Sbjct  378  --GQNGKK--ERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRGTND---KP  430

Query  491  YEDQAGFCKSATLEEIKKHDFVLTPGRYVGATEELDDGIPFGEKMATLTAKLSEQFAESA  550
            YED AGFCK A LEE+K+++++LTPGRYVG ++  +D  PF +KM  +T+ LSEQFA S 
Sbjct  431  YEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQFAKSK  490

Query  551  TLEAEIKKNLVGLGYEL  567
             LE +I+K+L GLGY +
Sbjct  491  ELEDQIRKSLEGLGYGV  507

207) Desaf_3447 in NC_016629


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  446 bits (1679),  Expect = 2e-126, Method: Compositional matrix adjust.
 Identities = 271/555 (49%), Positives = 389/555 (71%), Gaps = 57/555 (10%)

Query  9    SELVYADTLWKAADTLRGQVDAAEYKHVVLGLLFLKYISDSFEARREELQAELQTDGITE  68
            + + + + LW+AAD LRG +DAAEYK+V LGL+FLKY+SDSFE + EEL+ +  +D    
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADE---  61

Query  69   PQLTALLENRDEYTAERVFWVPPEARWANLQNQatradiatliddailaiERDNPNLKSK  128
                   E++DEY AE +FWVP EARW  ++++A +++I+ +ID A++AIE +N +LK+ 
Sbjct  62   -------EDQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGV  114

Query  129  LPRDYARRGIESGRLKRLIELIADVGFKGDRAKAR--DTLGRVYEYFLGKFAQAEGKLGG  186
            LP++YAR +++  +L  +I+L++   FK + + +R  D LGRVYEYF++KFA AEGK +G
Sbjct  115  LPKEYARPALDKEKLGDIIDLFT---FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAG  171

Query  187  EFYTPRCVVRLLVEMIEPYNGRVYDPCCGSGGMFVQSERFVEAHGGQKTDISIFGQESNP  246
            EFYTP  +V+LLVEMIEPY+GR+YDPCCGSGGMFVQSERFVE H G+  DI+I+GQESNP
Sbjct  172  EFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNP  231

Query  247  TTWRLAHMNLAIRSIEANLGSQPADTFLRNLHSDLRADYILANPPFNVSDWSGKLLQDDV  306
            TTW+LA MNLAIR+I+ +LG + ADTF  +LH +L+ADYILANPPFN SDW+   L DD 
Sbjct  232  TTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDY  291

Query  307  RWRYGTPPLGNANYAWIQHFIHHLALPNGRGGGVAGFVMANGSLSSNAGGEGEIRQRIVE  366
            RW++G PP GNANYAWI+H I  LA       G AGFV+ANGS+S+++ +E EIR+ ++E
Sbjct  292  RWQFGIPPKGNANYAWIEHMISKLA-----PNGTAGFVLANGSMSTSGKDELEIRKNLIE  346

Query  367  ADLVDAIVALPAQLFFTTGIPVCLWFLTRDKTGKNLKNGCPNRPDGRKGETLFIDARKLG  426
             DLV+ IV+LP+QLF++T IPVCLWF++ +K  +  K+        R  E LFIDAR +G
Sbjct  347  QDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKKE--------RENEILFIDAREIG  398

Query  427  IMQTRTLRVLTGGDSGETLLADGIGDPKPDSDIGRIVYAFRQWRGEPKPEWWDEEKHGGW  486
             M +RTL+ ++                  D DI ++  +++ WRG               
Sbjct  399  HMVSRTLKEFS------------------DEDIQKVAQTYHAWRGTNDK-----------  429

Query  487  AYCDISGFCKATHIEEIKEQGFVLTPGRYVGAEEQANDNEPFIEKYPQLLAELEECFVEG  546
            +Y DI+GFCK +++EE+K++ ++LTPGRYVG  +  +D+EPF +K  ++ +EL E F  +
Sbjct  430  PYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQFAKS  489

Query  547  QRLTAEVRRILGGVA  561
            + L  ++R+ L G++
Sbjct  490  KELEDQIRKSLEGLG  504

208) PACID_07550 in NC_019395


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  446 bits (1679),  Expect = 2e-126, Method: Compositional matrix adjust.
 Identities = 252/533 (48%), Positives = 382/533 (72%), Gaps = 42/533 (7%)

Query  17   LKDTLWKAADKLRGSMSAAQYKDVVLGLIFLKYVSDAFNERREQITEELRADGYDDEAIA  76
            + + LW+AADKLRGSM AA+YK+V LGLIFLKYVSD+F+E+     EEL+ D Y DE   
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEK----YEELKQDPYADE---  61

Query  77   ETLEDRDEY-ASGAFWVDPDARWDSLVADAKVAGETTIGQRINEAMDLLMHDNPSLEGTL  135
               ED+DEY A   FWV  +ARW+ +  +AK      IGQ I+ AM  + ++N SL G L
Sbjct  62   ---EDQDEYLAENIFWVPKEARWQYINDNAK---KPEIGQIIDKAMIAIENENESLKGVL  115

Query  136  PRLFNRDNVDQRRLAELLDLLNSVQFS-GMGAAKARDLLGEVYEYFLANFALSEGHRGGE  194
            P+ + R  +D+ +L++++DL+    F  G   ++ +D+LG VYEYF+A+FA +EG  +GE
Sbjct  116  PKEYARPALDKEKLGDIIDLFT---FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGE  172

Query  195  FYTPASVVRVIVEVLQPRKGRVYDPCCGSGGMFVQAEKFLDAHDADPTNLSVYGQELNES  254
            FYTP+S+V+++VE+++P KGR+YDPCCGSGGMFVQ+E+F++ H++   ++++YGQE N +
Sbjct  173  FYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPT  232

Query  255  TWRMAKMNLAIHGLNGDLGPHWGDTFAMPYHGDRQMDYVMANPPFNIKDWS--RRESDPR  312
            TW++AKMNLAI+G++ DLG + +DTF    H + + DY++ANPPFN  DW+  R   D R
Sbjct  233  TWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYR  292

Query  313  WVYGVPPAKNANYAWMQHIISKLAPGGMAGVVMANGSMTSTSNGEGDIRAQFVENDLVAA  372
            W +G+PP  NANYAW++H+ISKLAP G AG V+ANGSM++++++E +IR +++E+DLV  
Sbjct  293  WQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVEC  352

Query  373  MVALPDKLFRSTGIPACLWFFAKDKGAGDSGSVDRRGQVLFIDAREMGYMITRAQRGLKA  432
            +V+LP++LF ST IP CLWF++++K  G++G  +R  ++LFIDARE+G M++R+ + +  
Sbjct  353  IVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMVSRTLKEFSD  410

Query  433  EEIQRIADTFHAWRGMEQLSLATADVTVDDEDSVSASGTEYEDVPGFCKSVSIAEIKDAG  492
            E+IQ++A+T+HAWRG                    +++  YED++GFCK  ++ E+K+  
Sbjct  411  EDIQKVAQTYHAWRG--------------------TNDKPYEDIAGFCKVANLEEVKNNE  450

Query  493  YALTPGRYVGMAGAEEDDEPLDEKIARLTSELNKQLDEATALGATVREQLGRL  545
            Y LTPGRYVG+A+ EED+EP+++K+ R+TSEL+ Q+  +  L   +R  L  L
Sbjct  451  YILTPGRYVGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

209) hsdM in NC_000907


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  445 bits (1676),  Expect = 3e-126, Method: Compositional matrix adjust.
 Identities = 269/543 (50%), Positives = 383/543 (71%), Gaps = 57/543 (10%)

Query  44   LDEKLWASADKLRKQLDAANYKHIVLGLIFLKYISDSFTHQQEKIQAELSTPENPLYLDR  103
            ++EKLW +ADKLR  +DAA+YK++ LGLIFLKY+SDSF ++ E ++              
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELK--------------  54

Query  104  TFFDTEEEYQEALTAELENRDYYTADNVFWVPASARWQALQEVSILNTGAELPWGGKFSG  163
                 ++ Y +      E++D Y A+N+FWVP  ARWQ +++             +K + 
Sbjct  55   -----QDPYADE-----EDQDEYLAENIFWVPKEARWQYIND------------NAKKPE  92

Query  164  VAKLIDDAFDAIEKDNEKLKGVLQRISGY---AVNEDTLRGLIILFSDTHFTRPTYNGEP  220
            ++++ID A  AIE++NE LKGVL +   Y   A++ + L ++I LF        T++   
Sbjct  93   IGQIIDKAMIAIENENESLKGVLPK--EYARPALDKEKLGDIIDLF--------TFKVGD  142

Query  221  VHLGAKDILGHVYEYFLSRFAQAEGKRSGQYFTPKSIVSLIVEMLEPYSGRVYDPAMGSG  280
             +   +D+LG+VYEYF+++FA AEGK +G+++TP SIV L+VEM+EPY GR+YDP  GSG
Sbjct  143  TESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSG  202

Query  281  GFFVQTERFITAHQGNINNVSIYGQEFNPTTWKLAAMNMAIRGIDYDFGKYNADSFTQPQ  340
            G FVQ+ERF+  HQG +++++IYGQE NPTTWKLA MN+AIRGID D+G  NAD+F +  
Sbjct  203  GMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRGIDNDLGERNADTFHNDL  262

Query  341  HIDKKMDFIMANPHFNDKEWWNESLADDPRWAYGTPPKGNANFAWLQHMIYHLSPNGKIA  400
            H + K D+I+ANP FN  +W +E L DD RW +G PPKGNAN+AW++HMI  L+PNG  +
Sbjct  263  HKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAG  322

Query  401  LLLANGSMSSQTNNEGEIRKAIINADLVECMVALPGQLFTNTKIPACIWFLNRN------  454
            ++LANGSMS+  ++E EIRK +I+ DLVEC+V+LPGQLF +T+IP C+WF++ N      
Sbjct  323  FVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGK  382

Query  455  KKRKGEVLFIDARQIGYMKDRVLRDFTADDIAKIADTLHAWQTSDG--YEDQAAFCKSAT  512
            K R  E+LFIDAR+IG M  R L++F+ +DI K+A+T HAW+ +++  YED A+FCK A 
Sbjct  383  KERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRGTNDKPYEDIAGFCKVAN  442

Query  513  LEEIKNNDFVLTPGRYVGTAEQEDDGVPFAEKMQNLTALLKEQFAKSAELEAEIKKNLGG  572
            LEE+KNN+++LTPGRYVG A+ E+D  PF +KM+ +T+ L EQFAKS ELE +I+K+L G
Sbjct  443  LEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEG  502

Query  573  LGY  575
            LGY
Sbjct  503  LGY  505

210) EcE24377A_0286 in NC_009801


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  445 bits (1675),  Expect = 3e-126, Method: Compositional matrix adjust.
 Identities = 266/559 (48%), Positives = 397/559 (72%), Gaps = 65/559 (11%)

Query  12   LDNKFWKAADKLRANMDAANYKHVVLGLIFLKYVSDAFEARQQELTTLFRDVGNPDNIYA  71
            +++K+W+AADKLR++MDAA+YK+V LGLIFLKYVSD+FE + +EL               
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELK--------------  54

Query  72   MSRDDYGSDEEYAQAIQEELEVEDYYTEKNIFWVPKAARWDTLKNKAMLPTGTVLWVDET  131
              +D Y+ +E+     Q+E      Y   NIFWVPK ARW+ ++++A  P          
Sbjct  55   --QDPYADEED-----QDE------YLAENIFWVPKEARWQYINDNAKKP----------  91

Query  132  TGKDVTLRSVSWLVDNALDEIEKTNPKLKGILNR-ISQYQLGNEVLTGLINTFSDANFSN  190
                     ++ ++D+A+  IE+ N  LKG+L +  ++  L++E L ++I+ F+      
Sbjct  92   --------EIGQIIDKAMIAIENENESLKGVLPKEYARPALDKEKLGDIIDLFT------  137

Query  191  PEYNGEKLNLKSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEMLQPYNGRVY  250
              ++    + + +D+LG+VYEYF+++FA AEGK++G++YTP SIV L+VEM++PY+GR+Y
Sbjct  138  --FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIY  195

Query  251  DPAMGSGGFFVSSDRFIEEHAGEKQYNAAEQKRNISVYGQESNPTTWKLAAMNMAIRGID  310
            DP  GSGG FV S+RF+E H G  +        +I++YGQESNPTTWKLA MN+AIRGID
Sbjct  196  DPCCGSGGMFVQSERFVEKHQGRLD--------DIAIYGQESNPTTWKLAKMNLAIRGID  247

Query  311  FNFGSKNADTLLDDQHPDLRADFVMANPPFNMKEWWNAKLENDVRWKYGTPPQGNANFAW  370
             ++G +NADT+ +D H +L+AD+++ANPPFN  +W + +L +D RW++G PP+GNAN+AW
Sbjct  248  NDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAW  307

Query  371  MQHMIHHLAPKGSMALLLANGSMSSNTNNEGEIRRNLIKADLVECMVALPGQLFTNTQIP  430
            ++HMI  LAP+G+ +++LANGSMS++ ++E EIR+NLI  DLVEC+V+LPGQLF +TQIP
Sbjct  308  IEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIP  367

Query  431  ACIWFLTKDKSSGNGKAHRKGEVLFIDARKIGFMKDRVLRDFTREDIARIADTFHKWQA-  489
             C+WF++++K+  NGK +R  E+LFIDAR IG M  R L++F+ EDI ++A+T+H W++ 
Sbjct  368  VCLWFISNNKGQ-NGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRGT  426

Query  490  -DKEYEDEAGFCFSATLEDIQKNDFVLTPGRYVGAAEQAEDDEPFAEKMARLTAQLKGQL  548
             DK YED AGFC  A LE++++N+++LTPGRYVG A+  ED+EPF +KM R+T++L  Q+
Sbjct  427  NDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQF  486

Query  549  EESAKLEAQIKANLGGLGY  567
              S  LE QI+ +L GLGY
Sbjct  487  AKSKELEDQIRKSLEGLGY  505

211) Maqu_3380 in NC_008740


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  445 bits (1675),  Expect = 4e-126, Method: Compositional matrix adjust.
 Identities = 261/563 (47%), Positives = 401/563 (72%), Gaps = 66/563 (11%)

Query  11   ALDDKLWKAADKLRANLDAANYKHVVLGLIFLKYVSDAfeerqeellerfKDQNDDIYYL  70
            ++++KLW+AADKLR+++DAA+YK+V LGLIFLKYVSD+           F ++ ++   L
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDS-----------FEEKYEE---L  53

Query  71   PPEDYDGHEDYQQALLEELEILDYYREANVFWVPKPARWSTLKEKAVLPVGTVLWQDDAG  130
              + Y ++ED ++           Y   N+FWVPK ARW  ++++A              
Sbjct  54   KQDPYADEEDQDE-----------YLAENIFWVPKEARWQYINDNA--------------  88

Query  131  NDVKLRSVSWLIDNALEEIEKSNAKLKGILNR-ISQYQLDNDKLLGLINTFSDTSFTRPV  189
               K   ++ +ID+A+  IE+ N  LKG+L +  ++  LD++KL ++I+ F+        
Sbjct  89   ---KKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALDKEKLGDIIDLFT--------  137

Query  190  FEGEKLSLHSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEMLQPYSGRVYDP  249
            F       + +D+LG+VYEYF+++FA AEGK++G++YTP SIV L+VEM++PY GR+YDP
Sbjct  138  FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDP  197

Query  250  AMGSGGFFVSSDKFIEEHASEQHYDAGEQKKHISVYGQESNPTTWRLAAMNMAIRGIDFN  309
              GSGG FV S++F+E H +        +  +I++YGQESNPTTW+LA MN+AIRGID +
Sbjct  198  CCGSGGMFVQSERFVEKHQG--------RLDDIAIYGQESNPTTWKLAKMNLAIRGIDND  249

Query  310  FGKKNADTFLDDQHPDLRADFVMANPPFNIKDWWSESLADDVRWKYGTPPKGNANFGWMQ  369
            +G +NADTF +D H +L+AD+++ANPPFN  DW  E L DD RW++G PPKGNAN++W++
Sbjct  250  LGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAWIE  309

Query  370  HMLHHLAPTGSMALLLANGSMSSNTNNEGEIRKRLVEEDLVECMVALPGQLFTNTQIPAC  429
            HM+  LAP G+ +++LANGSMS++ ++E EIRK L+E+DLVEC+V+LPGQLF +TQIP C
Sbjct  310  HMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVC  369

Query  430  IWFLTKDKANGMVRNEKKRDRREEFLFIDARNLGFMRDRVLRDFTNDDVAKIADTFHAWQ  489
            +WF++++K+     ++ K++R +E+LFIDAR++G M  R L++F+++D+ K+A+T+HAW+
Sbjct  370  LWFISNNKG-----QNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWR  424

Query  490  --RGEGYEDVAGFCKSASLDEIKKHDFVLTPGRYVGAQEQEDDGEPFAEKMARLTGQLRE  547
               +  YED+AGFCK A+L+E+K+++++LTPGRYVG  + E+D EPF +KM R+T++L E
Sbjct  425  GTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSE  484

Query  548  QFAESDRLEAEIKRNLGGLGYEL  570
            QFA S  LE +I+++L GLGY +
Sbjct  485  QFAKSKELEDQIRKSLEGLGYGV  507

212) AMIS_67070 in NC_017093


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  444 bits (1673),  Expect = 4e-126, Method: Compositional matrix adjust.
 Identities = 258/526 (50%), Positives = 390/526 (75%), Gaps = 28/526 (5%)

Query  16   MSSTKQIQDILWKAADKLRGSMDAAQYKEFVLGLVFLKYVSDAFAERRAQIAEELTDMPE  75
            + +T  +++ LW+AADKLRGSMDAA+YK+  LGL+FLKYVSD+F E+  ++ ++    ++
Sbjct  3    LMATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQD--PYAD  60

Query  76   DRRAEFLDERDEYTAENVFWVPEIARWDYLVENAPN-GVGMLLDDAMDAVMRENPPLIGV  134
            +      +++DEY AEN+FWVP  ARW+Y+ +NA +  +G ++D AM A+  EN +L GV
Sbjct  61   E------EDQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGV  114

Query  135  LPKIFNRDNVDQKRLKELVDLISDARF-TGHGERSAQDVLGEVYEYFLEKFARAEGKRAG  193
            LPK + R  +D+ +L +++DL++   F  G+ E   QDVLG VYEYF+ KFA AEGK AG
Sbjct  115  LPKEYARPALDKEKLGDIIDLFT---FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAG  171

Query  194  EFYTPASVVKLIVEILEPYEGRVYDPCCGSGGMFVQAGKFVAAHAGRDHTHDIAVYGQEA  253
            EFYTP+S+VKL+VE++EPY GR+YDPCCGSGGMFVQ+ +FV  H GR   +DIA+YGQE+
Sbjct  172  EFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGR--LDDIAIYGQES  229

Query  254  NERTWRLAKMNLAIHGMDPKGIGDRWADTFAEDKHPDMQADFIMANPPFNMSDWARKE--  311
            N  TW+LAKMNLAI+G+D +++G+R ADTF +D H +++AD+I+ANPPFN SDW++    
Sbjct  230  NPTTWKLAKMNLAIRGID-NDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLL  288

Query  312  TDQRWRYGVPPQSNANYAWLQHMVSKLGDRGSAGVVLANGSMSSKQSGEGEIRREMIEQD  371
             D RW++G+PP++NANYAW++HM+SKL+  G+AG VLANGSMS+   +E EIR+++IEQD
Sbjct  289  DDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQD  348

Query  372  LIACMVALPPNLFRTTAIPACLWFLTKDKSSQGNRALTDRRGQTLFINAQASGTMVDRTE  431
            L+ C+V+LP +LF +T IP CLWF++++K+ +G++   +R  + LFI+A+  G MV RT 
Sbjct  349  LVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKK---ERENEILFIDAREIGHMVSRTL  405

Query  432  RILTDTDLSRIADTYHSWRGTKSAKAKGQAYQDVPGFCYSATLDEIGAFDHVLTPGWYVg  491
            + ++D D+ ++A+TYH+WRGT     ++++Y+D++GFC  A L+E+   + +LTPG+YV 
Sbjct  406  KEFSDEDIQKVAQTYHAWRGT-----NDKPYEDIAGFCKVANLEEVKNNEYILTPGRYV-  459

Query  492  ategeeeseaeppaDRIERLTKDLYAHFDESSRIQALIREQLGGIN  537
               ++ E + EP  +++ER+T +L  +F  S  ++  IR  L G+ 
Sbjct  460  -GLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLG  504

213) CD241_2201 in NC_016782


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  444 bits (1674),  Expect = 4e-126, Method: Compositional matrix adjust.
 Identities = 256/523 (49%), Positives = 387/523 (74%), Gaps = 26/523 (4%)

Query  14   TSKEIKDTLWKSADKLRGSMDASQYKDVALGLVFLKYVSDSFEERQKEIRAELEGKGFDE  73
            ++  + + LW++ADKLRGSMDA++YK+VALGL+FLKYVSDSFEE+  E++ +     + +
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQD----PYAD  60

Query  74   EYILEDLADVDAYTSENVFWVASNARWDFLKKYSKGMDLEGKHKSIGKLIDEAMQQLMAD  133
            E       D D Y +EN+FWV+ +ARW++++        ++K   IG++ID AM  +  +
Sbjct  61   E------EDQDEYLAENIFWVPKEARWQYIND-------NAKKPEIGQIIDKAMIAIENE  107

Query  134  NESLLGTLPQIYGKDNIDQRRLGELVDLFSSTYFASTKDKKARDLLGEVYEYFLDKFAKA  193
            NESL G LP+ Y++  +D+ +LG+++DLF  T+  +  + + +D+LG VYEYF+ KFA A
Sbjct  108  NESLKGVLPKEYARPALDKEKLGDIIDLF--TFKVGDTESRKQDVLGRVYEYFIAKFASA  165

Query  194  EGKRGGEFYTPQPVVRTLVEILEPTEGRVYDPCCGSGGMFVQAEKFLEVTKRDRSNIAVY  253
            EGK +GEFYTP ++V+ LVE++EP  GR+YDPCCGSGGMFVQ+E+F+E  +    +IA+Y
Sbjct  166  EGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIY  225

Query  254  GQELNERTWRMAKMNLAIHAISSSGLGERWGDTFARDIHAGTKMDYIMANPPFNIKDWIC  313
            GQE N  TW++AKMNLAI++I  ++LGER +DTF  D+H G K DYI+ANPPFN  DW  
Sbjct  226  GQESNPTTWKLAKMNLAIRGI-DNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQ  284

Query  314  NE--EDARWKYGVPPAKNANFAWMQHIISKLKDHGEAGVVMANGTMTSQSSGEGEIRKNM  371
            +   +D RW++G+PP  NAN+AW++H+ISKL  +G AG V+ANG+M++ + +E EIRKN+
Sbjct  285  ERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNL  344

Query  372  VEDDVVSCVIALPAQLFRGTGIPVCVWFFAKDKSAGAGGSVDRRGEVLLIDARQLGHMID  431
            +E+D+V C+++LP+QLF +T IPVC+WF++++K  G  G  +R  E+L+IDAR++GHM+ 
Sbjct  345  IEQDLVECIVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMVS  402

Query  432  RTERAFSDEDIAKIANAFRTWRGRKSAEGEYEDEAGFCKSATIEEIREAGYALTPGRYVG  491
            RT + FSDEDI K+A+++++WRG  + +  YED AGFCK A +EE+++  Y LTPGRYVG
Sbjct  403  RTLKEFSDEDIQKVAQTYHAWRG--TNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVG  460

Query  492  MpeaeeddepidekiaRLTAELTAALDESARLDAVVREQLGRL  534
            +++ EED+EP+++K+ R+T+EL+  +  S  L+  +R  L  L
Sbjct  461  LADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

214) CDHC01_2201 in NC_016786


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  444 bits (1674),  Expect = 4e-126, Method: Compositional matrix adjust.
 Identities = 256/523 (49%), Positives = 387/523 (74%), Gaps = 26/523 (4%)

Query  14   TSKEIKDTLWKSADKLRGSMDASQYKDVALGLVFLKYVSDSFEERQKEIRAELEGKGFDE  73
            ++  + + LW++ADKLRGSMDA++YK+VALGL+FLKYVSDSFEE+  E++ +     + +
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQD----PYAD  60

Query  74   EYILEDLADVDAYTSENVFWVASNARWDFLKKYSKGMDLEGKHKSIGKLIDEAMQQLMAD  133
            E       D D Y +EN+FWV+ +ARW++++        ++K   IG++ID AM  +  +
Sbjct  61   E------EDQDEYLAENIFWVPKEARWQYIND-------NAKKPEIGQIIDKAMIAIENE  107

Query  134  NESLLGTLPQIYGKDNIDQRRLGELVDLFSSTYFASTKDKKARDLLGEVYEYFLDKFAKA  193
            NESL G LP+ Y++  +D+ +LG+++DLF  T+  +  + + +D+LG VYEYF+ KFA A
Sbjct  108  NESLKGVLPKEYARPALDKEKLGDIIDLF--TFKVGDTESRKQDVLGRVYEYFIAKFASA  165

Query  194  EGKRGGEFYTPQPVVRTLVEILEPTEGRVYDPCCGSGGMFVQAEKFLEVTKRDRSNIAVY  253
            EGK +GEFYTP ++V+ LVE++EP  GR+YDPCCGSGGMFVQ+E+F+E  +    +IA+Y
Sbjct  166  EGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIY  225

Query  254  GQELNERTWRMAKMNLAIHAISSSGLGERWGDTFARDIHAGTKMDYIMANPPFNIKDWIC  313
            GQE N  TW++AKMNLAI++I  ++LGER +DTF  D+H G K DYI+ANPPFN  DW  
Sbjct  226  GQESNPTTWKLAKMNLAIRGI-DNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQ  284

Query  314  NE--EDARWKYGVPPAKNANFAWMQHIISKLKDHGEAGVVMANGTMTSQSSGEGEIRKNM  371
            +   +D RW++G+PP  NAN+AW++H+ISKL  +G AG V+ANG+M++ + +E EIRKN+
Sbjct  285  ERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNL  344

Query  372  VEDDVVSCVIALPAQLFRGTGIPVCVWFFAKDKSAGAGGSVDRRGEVLLIDARQLGHMID  431
            +E+D+V C+++LP+QLF +T IPVC+WF++++K  G  G  +R  E+L+IDAR++GHM+ 
Sbjct  345  IEQDLVECIVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMVS  402

Query  432  RTERAFSDEDIAKIANAFRTWRGRKSAEGEYEDEAGFCKSATIEEIREAGYALTPGRYVG  491
            RT + FSDEDI K+A+++++WRG  + +  YED AGFCK A +EE+++  Y LTPGRYVG
Sbjct  403  RTLKEFSDEDIQKVAQTYHAWRG--TNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVG  460

Query  492  MpeaeeddepidekiaRLTAELTAALDESARLDAVVREQLGRL  534
            +++ EED+EP+++K+ R+T+EL+  +  S  L+  +R  L  L
Sbjct  461  LADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

215) hsdM1 in NC_020230


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  444 bits (1671),  Expect = 6e-126, Method: Compositional matrix adjust.
 Identities = 263/521 (51%), Positives = 388/521 (75%), Gaps = 28/521 (5%)

Query  9    FQDTLWKAADKLRGSMDSSQYKDIVLGLVFLKYVTdafdarrlellaeleeegataeeia  68
            F++ LW+AADKLRGSMD+++YK++ LGL+FLKYV+D+F+ +  EL  +   +    +E  
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDE--  66

Query  69   eeledrdaYLEKNVFWVAKEARWDYLQRHSKGKTDDAGGEFKSIGKLIDEAAEALMADNL  128
                    YL  N+FWV+KEARW+Y++ ++K K +        IG++ID A  A+  +N 
Sbjct  67   --------YLAENIFWVPKEARWQYINDNAK-KPE--------IGQIIDKAMIAIENENE  109

Query  129  SLEGTLPHNYNSDSVDQRRLGELVDLFSTTRFTAEGPERARDLLGEVYEYFLARFASAEG  188
            SL G LP +Y   ++D+ +LG+++DLF+     ++   R +D+LG VYEYF+A+FASAEG
Sbjct  110  SLKGVLPKEYARPALDKEKLGDIIDLFTFK--VGDTESRKQDVLGRVYEYFIAKFASAEG  167

Query  189  KRGGEFYTPRSVVRTLVEILEPTEGRVYDPCCGSGGMFVQAEKFLDAHDKDPSAIAIYGQ  248
            K +GEFYTP S+V+ LVE++EP  GR+YDPCCGSGGMFVQ+E+F++ H+     IAIYGQ
Sbjct  168  KNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQ  227

Query  249  ELNERTWRLARMNLAIHALNSKGLGERWGDTFARDIHPGVEMDYVLANPPFNIKDWVRNT  308
            E N  TW+LA+MNLAI+++++ +LGER +DTF  D+H G+  DY+LANPPFN  DW ++ 
Sbjct  228  ESNPTTWKLAKMNLAIRGIDN-DLGERNADTFHNDLHKGLKADYILANPPFNASDWGQER  286

Query  309  --DDKRWSYGVPPAKNANFGWMQHIIYKLSPQGEAGVVMANGTMTTSTKEEFEIRKNMLE  366
              DD RW +G+PP  NAN++W++H+I KL+P+G AG V+ANG+M+TS K+E+EIRKN++E
Sbjct  287  LLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIE  346

Query  367  DDVVSCVVTLPAQLFRGTQIPVCVWFFAKDKGAGSKGSVDRRREFLLIDARELGHMVDRT  426
            +D+V C+VTLP+QLF +TQIPVC+WF++++KG  +K   +R  E+L+IDARE+GHMV RT
Sbjct  347  QDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKK--ERENEILFIDAREIGHMVSRT  404

Query  427  ERTFSDEDIQKIANTFRTWRGRSSAESEYEDIPGYCKSVSLDEIREADYALTPGRYVGFA  486
             + FSDEDIQK+A+T+++WRG  + +  YEDI+G+CK  +L+E+++ +Y LTPGRYVG+A
Sbjct  405  LKEFSDEDIQKVAQTYHAWRG--TNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLA  462

Query  487  eeeedgeptdeKIARLTAELTAALDESARLGAVVREQLGRL  527
            + EED EP ++K+ R+T+EL+  +  S  L   +R  L  L
Sbjct  463  DVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

216) CDC7B_2290 in NC_016801


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  444 bits (1672),  Expect = 6e-126, Method: Compositional matrix adjust.
 Identities = 256/523 (49%), Positives = 388/523 (75%), Gaps = 26/523 (4%)

Query  14   TSKEIKDTLWKSADKLRGSMDASQYKDVALGLVFLKYVSDSFEERQKEIRAELEGQGIDE  73
            ++  + + LW++ADKLRGSMDA++YK+VALGL+FLKYVSDSFEE+  E++        ++
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELK--------QD  56

Query  74   EYILEDLADVDAYTSENVFWVASNARWDFLKKYSKGMDLEGKHKSIGKLIDEAMQQLMAD  133
             Y  E+  D D Y +EN+FWV+ +ARW++++        ++K   IG++ID AM  +  +
Sbjct  57   PYADEE--DQDEYLAENIFWVPKEARWQYIND-------NAKKPEIGQIIDKAMIAIENE  107

Query  134  NESLLGTLPQIYGKDNIDQRRLGELVDLFSSTYFASTKDKKARDLLGEVYEYFLDKFAKA  193
            NESL G LP+ Y++  +D+ +LG+++DLF  T+  +  + + +D+LG VYEYF+ KFA A
Sbjct  108  NESLKGVLPKEYARPALDKEKLGDIIDLF--TFKVGDTESRKQDVLGRVYEYFIAKFASA  165

Query  194  EGKRGGEFYTPQPVVRTLVEILEPTEGRVYDPCCGSGGMFVQAEKFLEATKRDRSNIAVY  253
            EGK +GEFYTP ++V+ LVE++EP  GR+YDPCCGSGGMFVQ+E+F+E  +    +IA+Y
Sbjct  166  EGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIY  225

Query  254  GQELNERTWRMAKMNLAIHAISSSGLGERWGDTFARDIHAGTKMDYIMANPPFNIKDWIC  313
            GQE N  TW++AKMNLAI++I  ++LGER +DTF  D+H G K DYI+ANPPFN  DW  
Sbjct  226  GQESNPTTWKLAKMNLAIRGI-DNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQ  284

Query  314  NE--EDARWKYGVPPAKNANFAWMQHIISKLKDHGEAGVVMANGTMTSQSSGEGEIRKKM  371
            +   +D RW++G+PP  NAN+AW++H+ISKL  +G AG V+ANG+M++ + +E EIRK++
Sbjct  285  ERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNL  344

Query  372  VEDDVVSCVIALPAQLFRGTGIPVCVWFFAKDKSAGAGGSVDRRGEVLLIDARQLGHMID  431
            +E+D+V C+++LP+QLF +T IPVC+WF++++K  G  G  +R  E+L+IDAR++GHM+ 
Sbjct  345  IEQDLVECIVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMVS  402

Query  432  RTERAFSDEDIAKIANAFRTWRGRKSAEGEYEDEAGFCKSATIEEIREAGYALTPGRYVG  491
            RT + FSDEDI K+A+++++WRG  + +  YED AGFCK A +EE+++  Y LTPGRYVG
Sbjct  403  RTLKEFSDEDIQKVAQTYHAWRG--TNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVG  460

Query  492  MpeaeeddepidekiaRLTAELTAALDESVRLDAVVREQLGRL  534
            +++ EED+EP+++K+ R+T+EL+  +  S  L+  +R  L  L
Sbjct  461  LADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

217) CYCME_0988 in NC_021917


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  444 bits (1672),  Expect = 6e-126, Method: Compositional matrix adjust.
 Identities = 263/573 (46%), Positives = 396/573 (70%), Gaps = 79/573 (13%)

Query  12   LDVKLWASADRLRNNLDAANYKHVVLGLIFLKYVSDAFEERQEELRHLFTQDVPFPNGDD  71
            ++ KLW +AD+LR ++DAA+YK+V LGLIFLKYVSD+FEE+ EEL++             
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQ-------------  55

Query  72   NIYYMPREDYESDEEYNEAVNAELELHEYYQEKNVFWVPKQARWEFLKSSAALPIGTEIE  131
                   + Y  +E+           ++ Y   N+FWVPK+ARW++++ +A         
Sbjct  56   -------DPYADEED-----------QDEYLAENIFWVPKEARWQYINDNA---------  88

Query  132  LESGDKFKLTSISKLIDNALESIETYKIDDKLANPKLKGVLPR-ISRYEVDNHNLTELIN  190
                   K   I+++ID+A+ +IE         N  LKGVLP+  +R  +D+++L ++I+
Sbjct  89   -------KKPEIGQIIDKAMIAIEN-------ENESLKGVLPKEYARPALDKEKLGDIID  134

Query  191  RFSDTSFRNPEYNGEKLDLHSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEM  250
             F+        ++    + + +D+LG+VYEYF+++FA AEGK++G++YTP SIV L+VEM
Sbjct  135  LFT--------FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEM  186

Query  251  LQPYQGRVYDPAMGAGGFFVSNDKFIEAHAADKHYNAADQRKHISVYGQESNPTTWKLAA  310
            ++PY+GR+YDP  G+GG FV +++F+E H +        +  +I++YGQESNPTTWKLA 
Sbjct  187  IEPYKGRIYDPCCGSGGMFVQSERFVEKHQG--------RLDDIAIYGQESNPTTWKLAK  238

Query  311  MNMAIRGIDFNFGKKNADTFLDDQHPDLRADFVMANPPFNIKDWWHAKLEGDIRWKHGTP  370
            MN+AIRGID ++G +NADTF +D H +L+AD+++ANPPFN  DW + +L +D RW+ G P
Sbjct  239  MNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIP  298

Query  371  PQGNANYGWIQHMLHHLNDNGSMGLLLANGSMSSNTNNEGEIRKALIEADLVECMVALPG  430
            P+GNANY+WI+HM+  L  NG+ G++LANGSMS++ ++E EIRK LIE DLVEC+V+LPG
Sbjct  299  PKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPG  358

Query  431  QLFTNTQIPACIWFLTKNKKGGTSPTQKGKRDRRGETLFIDARNLGFMKDRVLRDFTNDD  490
            QLF +TQIP C+WF+++NK       Q+GK++R  E LFIDAR++G M  R L++F+++D
Sbjct  359  QLFYSTQIPVCLWFISNNK------GQNGKKERENEILFIDAREIGHMVSRTLKEFSDED  412

Query  491  IAKIADVFHAWQSGTG--YEDEKGFCFSAKLEDLKKHDYVLTPGRFVGAADAEEDSEPFP  548
            I K+A+ +HAW++  +  YED  GFC  A+LE++K+++Y+LTPGR+VG AD EED EPF 
Sbjct  413  IQKVAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFE  472

Query  549  EKMQRLTAQLKSQFEESDRLEKAIKDNLAGIGY  581
            +KM+R+T++L  QF  S  LE  I+ +L G+GY
Sbjct  473  QKMERITSELSEQFAKSKELEDQIRKSLEGLGY  505

218) CD31A_2338 in NC_016799


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  444 bits (1671),  Expect = 7e-126, Method: Compositional matrix adjust.
 Identities = 255/523 (49%), Positives = 387/523 (74%), Gaps = 26/523 (4%)

Query  14   TSKEIKDTLWKSADKLRGSMDASQYKDVALGLVFLKYVSDSFEERQKEIRAELEGKGFDE  73
            ++  + + LW++ADKLRGSMDA++YK+VALGL+FLKYVSDSFEE+  E++ +     + +
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQD----PYAD  60

Query  74   EYILEDLADVDAYTSENVFWVASNARWDFLKKYSKGMELEGKHKSIGKLIDEAMQQLMTD  133
            E       D D Y +EN+FWV+ +ARW++++        ++K   IG++ID AM  +  +
Sbjct  61   E------EDQDEYLAENIFWVPKEARWQYIND-------NAKKPEIGQIIDKAMIAIENE  107

Query  134  NESLLGTLPQIYGKDNIDQRRLGELVDLFSSTYFASTKDKKARDLLGEVYEYFLDKFAKA  193
            NESL G LP+ Y++  +D+ +LG+++DLF  T+  +  + + +D+LG VYEYF+ KFA A
Sbjct  108  NESLKGVLPKEYARPALDKEKLGDIIDLF--TFKVGDTESRKQDVLGRVYEYFIAKFASA  165

Query  194  EGKRGGEFYTPQPVVRTLVEILEPTEGRVYDPCCGSGGMFVQAEKFLEATKRDRSNIAVY  253
            EGK +GEFYTP ++V+ LVE++EP  GR+YDPCCGSGGMFVQ+E+F+E  +    +IA+Y
Sbjct  166  EGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIY  225

Query  254  GQELNERTWRMAKMNLAIHAISSSGLGERWGDTFARDIHAGTKMDYIMANPPFNIKDWIC  313
            GQE N  TW++AKMNLAI++I  ++LGER +DTF  D+H G K DYI+ANPPFN  DW  
Sbjct  226  GQESNPTTWKLAKMNLAIRGI-DNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQ  284

Query  314  NE--EDAHWKYGVPPAKNANFAWMQHIISKLKDHGEAGVVMANGTMTSQSSGEGEIRKNM  371
            +   +D +W++G+PP  NAN+AW++H+ISKL  +G AG V+ANG+M++ + +E EIRKN+
Sbjct  285  ERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNL  344

Query  372  VEDDVVSCVIALPAQLFRGTGIPVCVWFFAKDKSAGAGGSVDRRGEVLLIDARQLGHMID  431
            +E+D+V C+++LP+QLF +T IPVC+WF++++K  G  G  +R  E+L+IDAR++GHM+ 
Sbjct  345  IEQDLVECIVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMVS  402

Query  432  RTERAFSDEDIAKIANAFRTWRGRKSAEGEYEDEAGFCKSATIEEIREAGYALTPGRYVG  491
            RT + FSDEDI K+A+++++WRG  + +  YED AGFCK A +EE+++  Y LTPGRYVG
Sbjct  403  RTLKEFSDEDIQKVAQTYHAWRG--TNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVG  460

Query  492  MpeaeeddepidekiaRLTAELTAALDESARLDAVVREQLGRL  534
            +++ EED+EP+++K+ R+T+EL+  +  S  L+  +R  L  L
Sbjct  461  LADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

219) BN4_12245 in NC_020409


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  443 bits (1668),  Expect = 1e-125, Method: Compositional matrix adjust.
 Identities = 255/537 (48%), Positives = 386/537 (72%), Gaps = 41/537 (7%)

Query  14   EKRLWAAACKLLPSLDAAVYKHVVLGLVFLKYVGDSFVQRQEELKAQ-FANPDHEYFldd  72
            E +LW AA KL  S+DAA YK+V LGL+FLKYV+DSF ++ EELK + +A+ +++     
Sbjct  10   EEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ-----  64

Query  73   dledeellndeleeRDYYTEANVFWVPEKGRWSTLLECVKLNPGSKLPWGAEFKSVGNLL  132
                           D Y   N+FWVP  +RW  +      N  +K P       +G+++
Sbjct  65   ---------------DEYLAENIFWVPKEARWQYI------NDNAKKP------EIGQII  97

Query  133  DDAMDAIEKENPVLKNVLSKDFARLQVESSKLAEVMDLINTIPFEHESLKAKDILGHVYE  192
            D AM AIE+EN  LK VL+K++AR  ++  KL++++DL+ T+   +   + +D+LG+VYE
Sbjct  98   DKAMIAIENENESLKGVLPKEYARPALDKEKLGDIIDLF-TFKVGDTESRKQDVLGRVYE  156

Query  193  YFLGQFAAAEGKKGGQYYTPKSIVTLIVEMLRPYQGRVYDPACGSGGFFVSSEEFVEAHG  252
            YF+++FA+AEGK++G++YTP SIV L+VEM+ PY+GR+YDP CGSGG FV SE FVE H 
Sbjct  157  YFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQ  216

Query  253  GKVGNLSIYGQESNPTTWKLAAMNMAIRGIEFDFGKEPADTFGNDQHADKRFDYIMANPP  312
            G++++++IYGQESNPTTWKLA MN+AIRGI+ D+G   ADTF ND H + + DYI+ANPP
Sbjct  217  GRLDDIAIYGQESNPTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPP  276

Query  313  FNISGWGANKLADDVRWKYGLPPDSNANFAWMQHMIHHLGPKGKMALLLANGSMSTATNG  372
            FN S+WG ++L DD RW++G+PP +NAN+AW++HMI  L+P+G  +++LANGSMST+ ++
Sbjct  277  FNASDWGQERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKD  336

Query  373  EADIRRQIVDADLVECIVALPGQLFTNTQIPACIWFLNKDKSNGQNIETLRDRTGEVLFI  432
            E +IR+++++ DLVECIV+LPGQLF +TQIP C+WF++++K++  +    ++R  E+LFI
Sbjct  337  ELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGK----KERENEILFI  392

Query  433  DARNCGYMIDRVLRDLDREKDILRIAHTLLNWQMGDKAETPYADEAGFCASVELKDIRKH  492
            DAR+ G M+ R L+++  + DI ++A+T   W+  +  + PY D AGFC   +L +++++
Sbjct  393  DAREIGHMVSRTLKEFS-DEDIQKVAQTYHAWR--GTNDKPYEDIAGFCKVANLEEVKNN  449

Query  493  DYVLTPGRYVGAPEEVDDGIPFGEKMAVLTSTLFEQMAEGQRLDGEIRANLEKLGYA  549
            +Y+LTPGRYVG ++  +D  PF +KM  +TS L EQ A ++ L+++IR +LE LGY+
Sbjct  450  EYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYG  506

220) EpC_05870 in NC_012214


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  443 bits (1667),  Expect = 2e-125, Method: Compositional matrix adjust.
 Identities = 268/560 (48%), Positives = 392/560 (70%), Gaps = 64/560 (11%)

Query  12   LDSKFWKAADKLRANMDAANYKHVVLGLIFLKYVSDAFEARQQELTKLFRQVGNADNTYA  71
            ++ K+W+AADKLR++MDAA+YK+V LGLIFLKYVSD+FE + +EL               
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELK--------------  54

Query  72   IPREEYDSEAEYQQAIDQELEVEDYYAEKNVFWVPKAARWETLKSQAALPVGSVLGRDEN  131
              ++ Y  E +           +D Y   N+FWVPK ARW+ ++ +A  P          
Sbjct  55   --QDPYADEED-----------QDEYLAENIFWVPKEARWQYINDNAKKP----------  91

Query  132  GKELKLRSVSLLIDNALDKIEQSNGKLKGVLNR-IAHYQLGNEVLIGLINTFSDANFSNP  190
                    ++ +ID+A+  IE+ N  LKGVL +  A+  L++E L ++I+ F+       
Sbjct  92   -------EIGQIIDKAMIAIENENESLKGVLPKEYARPALDKEKLGDIIDLFT-------  137

Query  191  QYNGEQLKLSSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEMLQPYQGRVYD  250
             ++  +     +D+LG+VYEYF+++FA AEGK++G++YTP SIV L+VEM++PY+GR+YD
Sbjct  138  -FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYD  196

Query  251  PAMGSGGFFVSSDRFIEQHADAQRYNAAEQKQKIVVYGQESNPTTWRLAAMNMAIRGIDF  310
            P  GSGG FV S+RF+E+H +        + + I +YGQESNPTTW+LA MN+AIRGID 
Sbjct  197  PCCGSGGMFVQSERFVEKHQG--------RLDDIAIYGQESNPTTWKLAKMNLAIRGIDN  248

Query  311  DFGTKNADTLLDDQHPDLRADFVMANPPFNMKEWWSAKLENDVRWQYGTPPQGNANFAWM  370
            D+G +NADT+ +D H +L+AD+++ANPPFN  +W   +L +D RWQ+G PP+GNAN+AW+
Sbjct  249  DLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAWI  308

Query  371  QHMIHHLAPQGSMALLLANGSMSSNTNNEGEIRRKLVEADLVECMVALPGQLFTNTQIPA  430
            +HMI  LAP+G+ +++LANGSMS++ ++E EIR++L+E DLVEC+V+LPGQLF +TQIP 
Sbjct  309  EHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIPV  368

Query  431  CIWLLTKNKSGGNGKAHRKGEVLFIDARQTGFMKDRVLRDFTTEDIAKIAATFHAWQ--T  488
            C+W++++NK G NGK +R  E+LFIDAR+ G M  R L++F+ EDI K+A T+HAW+   
Sbjct  369  CLWFISNNK-GQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRGTN  427

Query  489  DKDYQDQAGFCFAASLADIQKNDFVLTPGRYVGAAEQEEDAEPFAEKMTRLTQQLKVQLA  548
            DK Y+D AGFC  A+L ++++N+++LTPGRYVG A+ EED EPF +KM R+T +L  Q+A
Sbjct  428  DKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQFA  487

Query  549  ESAELEKQIKANLGGLGYEL  568
             S ELE QI+ +L GLGY +
Sbjct  488  KSKELEDQIRKSLEGLGYGV  507

221) CDHC04_2221 in NC_016788


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  443 bits (1669),  Expect = 9e-126, Method: Compositional matrix adjust.
 Identities = 256/515 (50%), Positives = 384/515 (75%), Gaps = 26/515 (5%)

Query  22   LWKSADKLRGSMDASQYKDVALGLVFLKYVSDSFDERQKEIRAELEGQGIDEEYILEDLA  81
            LW++ADKLRGSMDA++YK+VALGL+FLKYVSDSF+E+  E++        ++ Y  E+  
Sbjct  13   LWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELK--------QDPYADEE--  62

Query  82   DVDAYTSENVFWVASNARWDFLKKYSKGMELEGKHKSIGKLIDEAMQQLMTDNESLLGTL  141
            D D Y +EN+FWV+ +ARW++++        ++K   IG++ID AM  +  +NESL G L
Sbjct  63   DQDEYLAENIFWVPKEARWQYIND-------NAKKPEIGQIIDKAMIAIENENESLKGVL  115

Query  142  PQIYGKDNIDQRRLGELVDLFSSTYFASTKDKKARDLLGEVYEYFLDKFAKAEGKRGGEF  201
            P+ Y++  +D+ +LG+++DLF  T+  +  + + +D+LG VYEYF+ KFA AEGK +GEF
Sbjct  116  PKEYARPALDKEKLGDIIDLF--TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEF  173

Query  202  YTPQPVVRTLVEILEPTEGRVYDPCCGSGGMFVQAEKFLEATKRDRSNIAVYGQELNERT  261
            YTP ++V+ LVE++EP  GR+YDPCCGSGGMFVQ+E+F+E  +    +IA+YGQE N  T
Sbjct  174  YTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTT  233

Query  262  WRMAKMNLAIHAISSSGLGERWGDTFARDIHAGTKMDYIMANPPFNIKDWICNE--EDAR  319
            W++AKMNLAI++I  ++LGER +DTF  D+H G K DYI+ANPPFN  DW  +   +D R
Sbjct  234  WKLAKMNLAIRGI-DNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYR  292

Query  320  WKYGVPPAKNANFAWMQHIISKLKDHGEAGVVMANGTMTSQSSGEGEIRKNMVEDDIVSC  379
            W++G+PP  NAN+AW++H+ISKL  +G AG V+ANG+M++ + +E EIRKN++E+D+V C
Sbjct  293  WQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVEC  352

Query  380  VIALPAQLFRGTGIPVCVWFFAKDKSAGVGGSVDRRGEVLLIDARQLGHMIDRTERAFSD  439
            +++LP+QLF +T IPVC+WF++++K  G  G  +R  E+L+IDAR++GHM+ RT + FSD
Sbjct  353  IVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMVSRTLKEFSD  410

Query  440  EDIAKIANAFRTWRGRKSAEGEYEDEAGFCKSATIEEIREAGYALTPGRYVGMpeaeedd  499
            EDI K+A+++++WRG  + +  YED AGFCK A +EE+++  Y LTPGRYVG+++ EED+
Sbjct  411  EDIQKVAQTYHAWRG--TNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDE  468

Query  500  epidekiaRLTAELTAALDESARLDAVVREQLGRL  534
            EP+++K+ R+T+EL+  +  S  L+  +R  L  L
Sbjct  469  EPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

222) hsdM1 in NC_010545


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  441 bits (1662),  Expect = 3e-125, Method: Compositional matrix adjust.
 Identities = 262/522 (51%), Positives = 389/522 (75%), Gaps = 28/522 (5%)

Query  9    FEDTLWKAADKLRGSMDASQYKDIVLGLVFLKYVTdafdarrlellaeleeegataeeia  68
            FE+ LW+AADKLRGSMDA++YK++ LGL+FLKYV+D+F+ +  EL  +   +    +E  
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDE--  66

Query  69   eeledrdaYLEKNVFWVAKEARWDYLQRHSKGKTDDAGGEFKSIGKLIDEAAEALMTDNL  128
                    YL  N+FWV+KEARW+Y++ ++K K +        IG++ID A  A+  +N 
Sbjct  67   --------YLAENIFWVPKEARWQYINDNAK-KPE--------IGQIIDKAMIAIENENE  109

Query  129  SLEGTLPHNYNSDSVDQRRLGELVDLFSTTRFTAEGPERARDLLGEVYEYFLARFASAEG  188
            SL G LP +Y   ++D+ +LG+++DLF+     ++   R +D+LG VYEYF+A+FASAEG
Sbjct  110  SLKGVLPKEYARPALDKEKLGDIIDLFTFK--VGDTESRKQDVLGRVYEYFIAKFASAEG  167

Query  189  KRGGEFYTPRSVVRTLVEILEPTEGRVYDPCCGSGGMFVQAEKFLDAHDKDPSAIAIYGQ  248
            K +GEFYTP S+V+ LVE++EP  GR+YDPCCGSGGMFVQ+E+F++ H+     IAIYGQ
Sbjct  168  KNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQ  227

Query  249  ELNERTWRLARMNLAIHALNSKGLGERWGDTFARDIHPGVEMDYVLANPPFNIKDWVRNT  308
            E N  TW+LA+MNLAI+++++ +LGER +DTF  D+H G+  DY+LANPPFN  DW ++ 
Sbjct  228  ESNPTTWKLAKMNLAIRGIDN-DLGERNADTFHNDLHKGLKADYILANPPFNASDWGQER  286

Query  309  --DDKRWSYGVPPAKNANFGWMQHIISKLSAQGEAGVVMANGTMTSNTSGEGEIRKNMLE  366
              DD RW +G+PP  NAN++W++H+ISKL+++G AG V+ANG+M+++  +E EIRKN++E
Sbjct  287  LLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIE  346

Query  367  DDIVSCVVTLPAQLFRGTQIPVCVWFFAKDKGAGSKGFVDRRGEFLLIDARELGHMVDRT  426
            +D+V C+VTLP+QLF +TQIPVC+WF++++KG  +K   +R  E+L+IDARE+GHMV RT
Sbjct  347  QDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKK--ERENEILFIDAREIGHMVSRT  404

Query  427  ERTFSDEDIQKIANTFRTWRGRSSAEGEYEDAPGYCKSVSLDEIREADYALTPGRYVGFA  486
             + FSDEDIQK+A+T+++WRG  + +  YED +G+CK  +L+E+++ +Y LTPGRYVG+A
Sbjct  405  LKEFSDEDIQKVAQTYHAWRG--TNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLA  462

Query  487  eeeedgepideKIARLTAELTAALDESARLNAVVREQLGRLG  528
            + EED EP+++K+ R+T+EL+  +  S  L+  +R  L  LG
Sbjct  463  DVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLG  504

223) Ndas_3080 in NC_014210


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  439 bits (1654),  Expect = 2e-124, Method: Compositional matrix adjust.
 Identities = 263/531 (50%), Positives = 389/531 (74%), Gaps = 35/531 (6%)

Query  14   GSKDLKDTLWKAADKLRGSMDAAEYKHFVLGLIFLKYVSDAFAERRVHIEKELREEGGYS  73
            ++ ++ + LW+AADKLRGSMDAAEYK+  LGLIFLKYVSD+F E+      EL+++  Y+
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKY----EELKQDP-YA  59

Query  74   ETDIAETLEDREEYIGYGVFWVPQAARWEAIAERAKTGAGEDGVGKLLDDAMKAVANTNP  133
            +       ED++EY++  +FWVP+ ARW+ I + AK       +G+++D AM A+ N N 
Sbjct  60   DE------EDQDEYLAENIFWVPKEARWQYINDNAKKPE----IGQIIDKAMIAIENENE  109

Query  134  SLRNSLPQGLFNARGVDERRLGELVDLINRIGFGDQLDPDGNRRSARDVLGEVYEYCLGK  193
            SL+  LP+  +   ++D  +LG+++DL     F  +++   +R+  +DVLG VYEY ++K
Sbjct  110  SLKGVLPKE-YARPALDKEKLGDIIDL-----FTFKVGDTESRK--QDVLGRVYEYFIAK  161

Query  194  FALAEGRRGGEYYTPACVVELIVAMLEPQKGERVYDPACGSGGMFVQAEKFVESHGGNAR  253
            FA AEG+ +GE+YTP+ +V L+V M+EP KG R+YDP CGSGGMFVQ+E+FVE H G   
Sbjct  162  FASAEGKNAGEFYTPSSIVKLLVEMIEPYKG-RIYDPCCGSGGMFVQSERFVEKHQGRLD  220

Query  254  DIAVYGQELNQNTWRLAKMNLAIHGISADLGTKWDDTFHNDHHPDLRAHVVMANPPFNIS  313
            DIA+YGQE N  TW+LAKMNLAI+GI  DLG +  DTFHND H +L+A+ ++ANPPFN S
Sbjct  221  DIAIYGQESNPTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNAS  280

Query  314  DWGGDRLVMDPRWQWGVPPVGNANYAWLQHMAYKLAPKAGRAGIVLANGSMSSKQSGEGD  373
            DWG +RL+ D RWQ G+PP GNANYAW++HM  KLAP+ G AG+VLANGSMS+   +E +
Sbjct  281  DWGQERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPN-GTAGFVLANGSMSTSGKDELE  339

Query  374  IRRAMVEDGLVACMVALPGQLFRSTQIPACVWILAKDRGAKGGRGSIDRTGQVLFIDARE  433
            IR+ ++E++LV C+V+LPGQLF STQIP C+W++++++G +G +   +R  ++LFIDARE
Sbjct  340  IRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKK---ERENEILFIDARE  396

Query  434  LGEMVTRTEKQLTEDEIKQISNTFHAWLGTSSAKRNGLTYEDIGGFCKSVSLDEIREHDF  493
            +G+MV+RT K++++++I+++++T+HAW GT+        YEDI+GFCK  +L+E++++++
Sbjct  397  IGHMVSRTLKEFSDEDIQKVAQTYHAWRGTNDK-----PYEDIAGFCKVANLEEVKNNEY  451

Query  494  ILTPGRYVGaaeveedpdaepldeKVARLQKELFEHFDASARLEAVVREQL  544
            ILTPGRYVG    + + D EP+++K+ R+  EL E+F  S  LE  +R  L
Sbjct  452  ILTPGRYVG--LADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSL  500

224) SHJG_6168 in NC_017765


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  439 bits (1654),  Expect = 2e-124, Method: Compositional matrix adjust.
 Identities = 266/532 (50%), Positives = 383/532 (72%), Gaps = 41/532 (7%)

Query  18   LWKSADKLRGSLDAAEYKHFVLGLVFLKYVSDAMEEKREQLEKALRGGSLLAEMGLEGGA  77
            LW++ADKLRGS+DAAEYK+  LGL+FLKYVSD+ EEK E+L               ++  
Sbjct  13   LWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELK--------------QDPY  58

Query  78   SEELIQRTVEDPKQYTGAGIFYVPPAARWDEVLKRAKVSTDGPSVGEVIDSAMGTIEKFN  137
            ++E      ED  +Y +  IF VP  ARW+ +   AK     P +G++ID AM +IE+ N
Sbjct  59   ADE------EDQDEYLAENIFWVPKEARWQYINDNAK----KPEIGQIIDKAMIAIENEN  108

Query  138  LTLKDTLPKIYNSGRVDETTLAELVKLLDQLTFQSQLSLDGRRTGARDLMGEVYEYFLEQ  197
             +LK+ LPK Y    +D   L++++ L+   TF+     ++R+   +D++G VYEYF+ +
Sbjct  109  ESLKGVLPKEYARPALDKEKLGDIIDLF---TFKVG-DTESRK---QDVLGRVYEYFIAK  161

Query  198  FALAEGRKGGEYYTPPSVVQLLVAMLEPQEGERVLDPACGSGGMFVQCEKFVELHEGNRF  257
            FA AEG+++GE+YTP+S+V+LLV M+EP  G R+ DP CGSGGMFVQ E+FVE H+G   
Sbjct  162  FASAEGKNAGEFYTPSSIVKLLVEMIEPYKG-RIYDPCCGSGGMFVQSERFVEKHQGRLD  220

Query  258  NVSVFGQERNQTTWRLAKMNLAIHGIEVDLGEEPADSFHNDQHGDVKADVVLANPPFNIS  317
            +++++GQE N TTW+LAKMNLAI+GI+ DLGE  AD+FHND H ++KAD +LANPPFN S
Sbjct  221  DIAIYGQESNPTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNAS  280

Query  318  DWGGERLVTDDRWKYGTPPAGNANFAWIQHMISKLAVGGRAGIVLANGSMSSKSGGEGDI  377
            DWG ERL+ D RW++G PP GNAN+AWI+HMISKLA  G AG+VLANGSMS+ + +E +I
Sbjct  281  DWGQERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEI  340

Query  378  RRAMIEDDLVACMVALPGQLFRSTQIPACLWFLAESKGKPRGKKPWISPERAGQILFIDA  437
            R+ +IE+DLV C+V+LPGQLF STQIP CLWF++++KG+  GKK     ER  +ILFIDA
Sbjct  341  RKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQ-NGKK-----ERENEILFIDA  394

Query  438  RELGYMKTRTMRDLSSEELERIAGTFRVWRGASKETEYKDVPGFCRSVTLEELSEHDFAL  497
            RE+G M +RT++++S E+++++A T++ WRG +++  Y D++GFC+   LEE+ ++++ L
Sbjct  395  REIGHMVSRTLKEFSDEDIQKVAQTYHAWRG-TNDKPYEDIAGFCKVANLEEVKNNEYIL  453

Query  498  TPGRYVGTAEVAEDPNAESIEAKIDRLATLLREQLTESEQLAKVVDEQLKRL  549
            TPGRYVG A+V ED   E++E K++R+++ L EQ++ S +L   +   L  L
Sbjct  454  TPGRYVGLADVEED--EEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

225) SHJGH_5930 in NC_020895


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  439 bits (1654),  Expect = 2e-124, Method: Compositional matrix adjust.
 Identities = 266/532 (50%), Positives = 383/532 (72%), Gaps = 41/532 (7%)

Query  18   LWKSADKLRGSLDAAEYKHFVLGLVFLKYVSDAMEEKREQLEKALRGGSLLAEMGLEGGA  77
            LW++ADKLRGS+DAAEYK+  LGL+FLKYVSD+ EEK E+L               ++  
Sbjct  13   LWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELK--------------QDPY  58

Query  78   SEELIQRTVEDPKQYTGAGIFYVPPAARWDEVLKRAKVSTDGPSVGEVIDSAMGTIEKFN  137
            ++E      ED  +Y +  IF VP  ARW+ +   AK     P +G++ID AM +IE+ N
Sbjct  59   ADE------EDQDEYLAENIFWVPKEARWQYINDNAK----KPEIGQIIDKAMIAIENEN  108

Query  138  LTLKDTLPKIYNSGRVDETTLAELVKLLDQLTFQSQLSLDGRRTGARDLMGEVYEYFLEQ  197
             +LK+ LPK Y    +D   L++++ L+   TF+     ++R+   +D++G VYEYF+ +
Sbjct  109  ESLKGVLPKEYARPALDKEKLGDIIDLF---TFKVG-DTESRK---QDVLGRVYEYFIAK  161

Query  198  FALAEGRKGGEYYTPPSVVQLLVAMLEPQEGERVLDPACGSGGMFVQCEKFVELHEGNRF  257
            FA AEG+++GE+YTP+S+V+LLV M+EP  G R+ DP CGSGGMFVQ E+FVE H+G   
Sbjct  162  FASAEGKNAGEFYTPSSIVKLLVEMIEPYKG-RIYDPCCGSGGMFVQSERFVEKHQGRLD  220

Query  258  NVSVFGQERNQTTWRLAKMNLAIHGIEVDLGEEPADSFHNDQHGDVKADVVLANPPFNIS  317
            +++++GQE N TTW+LAKMNLAI+GI+ DLGE  AD+FHND H ++KAD +LANPPFN S
Sbjct  221  DIAIYGQESNPTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNAS  280

Query  318  DWGGERLVTDDRWKYGTPPAGNANFAWIQHMISKLAVGGRAGIVLANGSMSSKSGGEGDI  377
            DWG ERL+ D RW++G PP GNAN+AWI+HMISKLA  G AG+VLANGSMS+ + +E +I
Sbjct  281  DWGQERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEI  340

Query  378  RRAMIEDDLVACMVALPGQLFRSTQIPACLWFLAESKGKPRGKKPWISPERAGQILFIDA  437
            R+ +IE+DLV C+V+LPGQLF STQIP CLWF++++KG+  GKK     ER  +ILFIDA
Sbjct  341  RKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQ-NGKK-----ERENEILFIDA  394

Query  438  RELGYMKTRTMRDLSSEELERIAGTFRVWRGASKETEYKDVPGFCRSVTLEELSEHDFAL  497
            RE+G M +RT++++S E+++++A T++ WRG +++  Y D++GFC+   LEE+ ++++ L
Sbjct  395  REIGHMVSRTLKEFSDEDIQKVAQTYHAWRG-TNDKPYEDIAGFCKVANLEEVKNNEYIL  453

Query  498  TPGRYVGTAEVAEDPNAESIEAKIDRLATLLREQLTESEQLAKVVDEQLKRL  549
            TPGRYVG A+V ED   E++E K++R+++ L EQ++ S +L   +   L  L
Sbjct  454  TPGRYVGLADVEED--EEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

226) hsdM in NC_019951


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  438 bits (1651),  Expect = 3e-124, Method: Compositional matrix adjust.
 Identities = 257/524 (50%), Positives = 381/524 (73%), Gaps = 31/524 (5%)

Query  18   LKDTLWKAADKLRGSVSASQYKDVILGLVFLKYVSDAYDerreairaelaaDGMEESQIE  77
            + + LW+AADKLRGS+ A++YK+V LGL+FLKYVSD+++E+          + + +    
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKY---------EELKQDPYA  59

Query  78   DLIDDPEEYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAVMKANP  137
            D  +D +EY +  +F VP  ARW+++ +N+K KP        +IGQ+ID AM A+ + N 
Sbjct  60   D-EEDQDEYLAENIFWVPKEARWQYINDNAK-KP--------EIGQIIDKAMIAIENENE  109

Query  138  TLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLGNFARAEG  197
            +L G LP+ Y +  +D+ +LG++IDLF       + E R +D++G VYEYF+++FA AEG
Sbjct  110  SLKGVLPKEYARPALDKEKLGDIIDLFTFK--VGDTESRKQDVLGRVYEYFIAKFASAEG  167

Query  198  KRGGEFFTPPSVVKVIVEVLEPSSGRVYDPCCGSGGMFVQTEKFIYEHDGDPKDVSIYGQ  257
            K +GEF+TP+S+VK++VE++EP  GR+YDPCCGSGGMFVQ+E+F+  H+G   D++IYGQ
Sbjct  168  KNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQ  227

Query  258  ESIEETWRMAKMNLAIHGIDNTGLGARWGDSFARDQHPDVRMDYVMANPPFNIKDWARNE  317
            ES   TW++AKMNLAI+GIDN +LG R +D+F  D H +++ DY++ANPPFN  DW+++ 
Sbjct  228  ESNPTTWKLAKMNLAIRGIDN-DLGERNADTFHNDLHKGLKADYILANPPFNASDWGQER  286

Query  318  --EDPRWRFGVPPANNANYAWIQHILYKLAPGGRAGVVMAngsmssnsngegDIRAQIVE  375
              +D RW+FG+PP  NANYAWI+H++ KLAP G AG V+ANGSMS+++++E +IR +++E
Sbjct  287  LLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIE  346

Query  376  ADLVSCMVALPTQLFRSTGIPVCLWFFAKDKAAGKQGSIDRCGQVLFIDARELGYMVDRA  435
             DLV C+V+LP QLF ST IPVCLWF++++K  G++G  +R  ++LFIDARE+G MV R+
Sbjct  347  QDLVECIVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMVSRT  404

Query  436  ERALTNEEIVRIGDTYHAWRGSKSAAAKGIMYEDVPGFCKSATLAEIKATDYALTPGRYV  495
             + +++E+I ++++TYHAWRG++  +     YED++GFCK A L E+K  +Y LTPGRYV
Sbjct  405  LKEFSDEDIQKVAQTYHAWRGTNDKP-----YEDIAGFCKVANLEEVKNNEYILTPGRYV  459

Query  496  GTPAVEDDGEPIDEKMARLTKALLEAFDESARLERVVREQLGRL  539
            G + VE+D EP+++KM R+T  L E F  S  LE  +R  L  L
Sbjct  460  GLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

227) hsdM in NC_004578


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  437 bits (1644),  Expect = 9e-124, Method: Compositional matrix adjust.
 Identities = 263/521 (51%), Positives = 376/521 (73%), Gaps = 29/521 (5%)

Query  59   LEKTLWATADKMRANMDPAEYKHIVLGLIFLKYISDSFAGRRAELERKFSdagddyylgg  118
            +E  LW +ADK+R++MD+AEYK++ LGLIFLKY+SDSF  +  EL +             
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQD------------  56

Query  119  ddptyLASELEERDYYKEVNVFWVPEPARWESLRAAAKQVDIGKRIDDALADIEAENPQL  178
                  A E ++ +Y  E N+FWVP  ARW+ +   AK+ +IG+ ID A+  IE EN  L
Sbjct  57   ----PYADEEDQDEYLAE-NIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESL  111

Query  179  KNILDKRYARAQLPDGKLGELVDMISIIGFSSDANKARDLLGQVYEYFLGQFASAEGKRG  238
            K +L K YAR+ L   KLG+++D++++    +++ K +D+LG+VYEYF+++FASAEGK +
Sbjct  112  KGVLPKEYARPALDKEKLGDIIDLFTFKVGDTESRK-QDVLGRVYEYFIAKFASAEGKNA  170

Query  239  GQFYTPASIVKTLVAVLNPHHGKVYDPCCGSGGMFVQSEKFIEAHGGKLGDVSIYGQESN  298
            G+FYTP+SIVK LV +++P  G++YDPCCGSGGMFVQSE+F+E H G+L+D++IYGQESN
Sbjct  171  GEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESN  230

Query  299  PTTWRLAAMNLAIRGMDFNLGKEPADSFIRNQHSDLRADFVLANPPFNISDWWHGSLDGD  358
            PTTW+LA MNLAIRG+D +LG   AD+F  + H +L+AD++LANPPFN SDW +  L +D
Sbjct  231  PTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDD  290

Query  359  SRWVYGTPPQGNANYAWLQHMLFHLKSSGRAGIVLANGSMSSSQNSEGDIRRamveadvv  418
             RW +G PP+GNANYAW++HM+  L ++G AG+VLANGSMS+S + E +IR+ ++E D+V
Sbjct  291  YRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLV  350

Query  419  evmvaLPGQLFFNTQIPACLWFLAKQKNK-----RPGEVLFIDARKLGTNISRVQIELLD  473
            E +V+LPGQLF++TQIP CLWF++++K +     R  E+LFIDAR +G  +SR   E+ D
Sbjct  351  ECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSD  410

Query  474  SDIESIAQTVANWRGVPLEVDGEIAEYADVAGFCRSVPLAEIAEHGHVLTPGRYVGaeav  533
             DI+ +AQT   WRG       +   Y D+AGFC+   L E+ ++  +LTPGRYVG   V
Sbjct  411  EDIQKVAQTYHAWRGT------NDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADV  464

Query  534  edddeafadKMQDLTALLGEQLAKGTELDQLIRHKLGGLGY  574
            E+D+E+F +KM+ +T+ L+EQ+AK+ EL++ IR  L GLGY
Sbjct  465  EEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGY  505

228) Sbal223_4473 in NC_011668


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  435 bits (1640),  Expect = 2e-123, Method: Compositional matrix adjust.
 Identities = 266/554 (49%), Positives = 384/554 (70%), Gaps = 57/554 (10%)

Query  12   LEGKLWNAADKLRSTLDAAQYKHAVLGLIFVKYVSDAFKLRQDEIKADIANPEHEYYLDP  71
            +E KLW+AADKLR+++DAA+YK+  LGLIF+KYVSD+F  + +E+K D        Y D 
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDP-------YADE  61

Query  72   ADYSeeelaeeiaieleQRDFYTEKNVFWLPTESRWQFLQDNGPLVIGGAELDINGKAKK  131
             D                +D Y   N+FW+P E+RWQ+++DN+                K
Sbjct  62   ED----------------QDEYLAENIFWVPKEARWQYINDNA----------------K  89

Query  132  ITSVGHLIDNALEGIERDNPKLKGVLNKSYSSLKIDQAKLNELINLIATIPFVHADLNSK  191
               +G++ID+A+ +IE +N  LKGVL K Y+   +D+ KL ++I+L+ T+   +++   +
Sbjct  90   KPEIGQIIDKAMIAIENENESLKGVLPKEYARPALDKEKLGDIIDLF-TFKVGDTESRKQ  148

Query  192  DILGHVYEYMLGQFALAEGKKGGQFYTPASIVSLIVEMIEPFEGRVYDPAMGSGGFFVQS  251
            D+LG+VYEY +++FA AEGK++G+FYTP+SIV L+VEMIEP+ GR+YDP  GSGG FVQS
Sbjct  149  DVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQS  208

Query  252  EKFIERHAHEKQVDALTQKHKISIYGQEYNYTTWQLAAMNMAIRGLDYDFGKEPASTYTN  311
            E+F+E+H          + + I+IYGQE N TTW+LA MN+AIRG+D D+G   A T+ N
Sbjct  209  ERFVEKHQ--------GRLDDIAIYGQESNPTTWKLAKMNLAIRGIDNDLGERNADTFHN  260

Query  312  VQHPDLRADFIMANPPFNMKEWNTGVDDNDPRFKYGQPPSGNANFAWMQHMLHHLAPEGS  371
              H +L+AD+I+ANPPFN  +W      +D R ++G PP GNAN+AW++HM+  LAP+G+
Sbjct  261  DLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGT  320

Query  372  QALLLANGSMSSTTNNEGTIRQALIENDLIECMVALPGQLFTNTQIPACIWFLTKNKNPR  431
             +++LANGSMS++ ++E  IR+ LIE+DL+EC+V+LPGQLF +TQIP C+WF+++NK   
Sbjct  321  AGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKG--  378

Query  432  VDKAGRKLRGRKGEVLFIDARNLGYMKDRVLRDFSFEDIQKVADVFHAWKTGETVNGVTY  491
              + G+K   R  E+LFIDAR++G M  R L++FS EDIQKVA+ +HAW+     N+  Y
Sbjct  379  --QNGKK--ERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWR---GTNDKPY  431

Query  492  EDQAGFCKSATLAEIAKHDFVLTPGRYVGAADEIDDGVPFAEKMEMLTTKLSEQFTESAK  551
            ED AGFCK A L E+ +++++LTPGRYVG AD  +D  PF +KME +T+ LSEQF+ S  
Sbjct  432  EDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQFAKSKE  491

Query  552  LEAEIKKNLAGLGY  565
            LE +I+K+L GLGY
Sbjct  492  LEDQIRKSLEGLGY  505

229) Acav_4677 in NC_015138


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  435 bits (1637),  Expect = 3e-123, Method: Compositional matrix adjust.
 Identities = 272/517 (53%), Positives = 371/517 (72%), Gaps = 29/517 (5%)

Query  8    TLWATADKLRANMDAAEYKHLVLGLIFLKYISDTFtartaelaarlrDPDDEYFYGDASD  67
             LW +ADKLR++MDAAEYK++ LGLIFLKY+SD+F              ++ Y   +   
Sbjct  12   KLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSF--------------EEKY---EELK  54

Query  68   EDIAAELEDRDYYTSANVFWVPeaarweairaaaKQTTIGKHIDDALGLIEAENPKLKGI  127
            +D  A+ ED+D Y + N+FWVP  ARW+ I   AK+  IG+ ID A+  IE EN  LKG+
Sbjct  55   QDPYADEEDQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGV  114

Query  128  LDKRYARAQLPGGKLGELVDLVSTIGFGTDPAVARDVLGQVYEYFLGMFASAEGKRGGQF  187
            L K YAR+ L   KLG+++DL  T+  G   +  +DVLG+VYEYF++ FASAEGK +G+F
Sbjct  115  LPKEYARPALDKEKLGDIIDLF-TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEF  173

Query  188  YTPASIVKTLVAVLAPHHGKVYDPCCGSGGMFVQSEKFIEAHGGKLGDVSIYGQEANPTT  247
            YTP+SIVK LV ++ P  G++YDPCCGSGGMFVQSE+F+E H G+L+D++IYGQE+NPTT
Sbjct  174  YTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTT  233

Query  248  WRLAAMNLAIRGIDFNLGREPADTFTHNQHPDLRADYILANPPFNISDWWHGSLAGDARW  307
            W+LA MNLAIRGID +LG   ADTF ++ H +L+ADYILANPPFN SDW +  L +D RW
Sbjct  234  WKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRW  293

Query  308  HYGDPPQGNANYAWLQHMLHHLKPTGRAGIVLANGSMSSSQNNEGVIRaamvdadvvevm  367
            ++G PP+GNANYAW++HM+  L P G AG+VLANGSMS+S ++E  IR  +++ D+VE +
Sbjct  294  QFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECI  353

Query  368  vaLPGQLFFNTQIPACLWFLSQ------RKKRKGEVLFIDARKLGKMISRVQAELDDaai  421
            V+LPGQLF++TQIP CLWF+S+      +K R  E+LFIDAR +G M+SR   E+ D  I
Sbjct  354  VTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDI  413

Query  422  ariaetvaaWRGEVEAGATITTYADVPGFCRSVPLPEIAQHGHVLTPGRYVGAEAVENDD  481
             ++A+T  AWRG  +       Y D++GFC+   L E+ ++  +LTPGRYVG   VE+D+
Sbjct  414  QKVAQTYHAWRGTND-----KPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDE  468

Query  482  EAFAEKMQKLTEKLGEQMAKGAELDALIRQKLGGLGY  518
            E+F +KM+++T  L+EQ AK+ EL+  IR+ L GLGY
Sbjct  469  EPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGY  505

230) hsdM in NC_015758


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  435 bits (1637),  Expect = 3e-123, Method: Compositional matrix adjust.
 Identities = 255/524 (49%), Positives = 381/524 (73%), Gaps = 31/524 (5%)

Query  18   LKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDerreairaelaaeGMEESQIE  77
            + + LW+AADKLRGS+ A++YK+V LGL+FLKYVSD+++E+ E          + +    
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYE---------ELKQDPYA  59

Query  78   DLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAVMKANP  137
            D  +D ++Y +  +F VP  ARW+++ +N+K KP        +IGQ+ID AM A+ + N 
Sbjct  60   D-EEDQDEYLAENIFWVPKEARWQYINDNAK-KP--------EIGQIIDKAMIAIENENE  109

Query  138  TLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLGNFARAEG  197
            +L G LP+ Y +  +D+ +LG++IDLF       + E R +D++G VYEYF+++FA AEG
Sbjct  110  SLKGVLPKEYARPALDKEKLGDIIDLFTFK--VGDTESRKQDVLGRVYEYFIAKFASAEG  167

Query  198  KRGGEFFTPPSVVKVIVEVLEPSSGRVYDPCCGSGGMFVQTEKFIYEHDGDPKDVSIYGQ  257
            K +GEF+TP+S+VK++VE++EP  GR+YDPCCGSGGMFVQ+E+F+  H+G   D++IYGQ
Sbjct  168  KNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQ  227

Query  258  ESIEETWRMAKMNLAIHGIDNKGLGARWSDTFARDQHPDVQMDYVMANPPFNIKDWARNE  317
            ES   TW++AKMNLAI+GIDN +LG R +DTF  D H +++ DY++ANPPFN  DW+++ 
Sbjct  228  ESNPTTWKLAKMNLAIRGIDN-DLGERNADTFHNDLHKGLKADYILANPPFNASDWGQER  286

Query  318  --EDPRWRFGVPPANNANYAWIQHILYKLAPGGRAGVVMAngsmssnsngegDIRAQIVE  375
              +D RW+FG+PP  NANYAWI+H++ KLAP G AG V+ANGSMS+++++E +IR +++E
Sbjct  287  LLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIE  346

Query  376  ADLVSCMVALPTQLFRSTGIPVCLWFFAKDKAAGKQGSIDRCGQVLFIDARELGDLVDRA  435
             DLV C+V+LP QLF ST IPVCLWF++++K  G++G  +R  ++LFIDARE+G++V R+
Sbjct  347  QDLVECIVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMVSRT  404

Query  436  ERALTNEEIVRIGDTFHAWRGSNSAAVKGIMYEDVPGFCKSATLAAIKATDYALTPGRYV  495
             + +++E+I ++++T+HAWRG+N  +     YED++GFCK A L  +K  +Y LTPGRYV
Sbjct  405  LKEFSDEDIQKVAQTYHAWRGTNDKP-----YEDIAGFCKVANLEEVKNNEYILTPGRYV  459

Query  496  GTPAVEDDGEPIDEKMARLSKALLEAFDESARLERVVREQLGRL  539
            G + VE+D EP+++KM R++  L E F  S  LE  +R  L  L
Sbjct  460  GLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

231) hsdM in NC_002945


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  435 bits (1638),  Expect = 3e-123, Method: Compositional matrix adjust.
 Identities = 255/524 (49%), Positives = 382/524 (73%), Gaps = 31/524 (5%)

Query  18   LKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDerreairaelaaeGMEESQIE  77
            + + LW+AADKLRGS+ A++YK+V LGL+FLKYVSD+++E+ E          + +    
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYE---------ELKQDPYA  59

Query  78   DLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAVMKANP  137
            D  +D ++Y +  +F VP  ARW+++ +N+K KP        +IGQ+ID AM A+ + N 
Sbjct  60   D-EEDQDEYLAENIFWVPKEARWQYINDNAK-KP--------EIGQIIDKAMIAIENENE  109

Query  138  TLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLGNFARAEG  197
            +L G LP+ Y +  +D+ +LG++IDLF       + E R +D++G VYEYF+++FA AEG
Sbjct  110  SLKGVLPKEYARPALDKEKLGDIIDLFTFK--VGDTESRKQDVLGRVYEYFIAKFASAEG  167

Query  198  KRGGEFFTPPSVVKVIVEVLEPSSGRVYDPCCGSGGMFVQTEKFIYEHDGDPKDVSIYGQ  257
            K +GEF+TP+S+VK++VE++EP  GR+YDPCCGSGGMFVQ+E+F+  H+G   D++IYGQ
Sbjct  168  KNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQ  227

Query  258  ESIEETWRMAKMNLAIHGIDNKGLGARWSDTFARDQHPDVQMDYVMANPPFNIKDWARNE  317
            ES   TW++AKMNLAI+GIDN +LG R +DTF  D H +++ DY++ANPPFN  DW+++ 
Sbjct  228  ESNPTTWKLAKMNLAIRGIDN-DLGERNADTFHNDLHKGLKADYILANPPFNASDWGQER  286

Query  318  --EDPRWRFGVPPANNANYAWIQHILYKLAPGGRAGVVMAngsmssnsngegDIRAQIVE  375
              +D RW+FG+PP  NANYAWI+H++ KLAP G AG V+ANGSMS+++++E +IR +++E
Sbjct  287  LLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIE  346

Query  376  ADLVSCMVALPTQLFRSTGIPVCLWFFAKDKAAGKQGSIDRCGQVLFIDARELGDLVDRA  435
             DLV C+V+LP QLF ST IPVCLWF++++K  G++G  +R  ++LFIDARE+G++V R+
Sbjct  347  QDLVECIVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMVSRT  404

Query  436  ERALTNEEIVRIGDTFHAWRGSKSAAVKGIMYEDVPGFCKSATLAEIKATDYALTPGRYV  495
             + +++E+I ++++T+HAWRG++  +     YED++GFCK A L E+K  +Y LTPGRYV
Sbjct  405  LKEFSDEDIQKVAQTYHAWRGTNDKP-----YEDIAGFCKVANLEEVKNNEYILTPGRYV  459

Query  496  GTPAVEDDGEPIDEKMARLSKALLEAFDESARLERVVREQLGRL  539
            G + VE+D EP+++KM R++  L E F  S  LE  +R  L  L
Sbjct  460  GLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

232) K60_028500 in NC_020245


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  435 bits (1638),  Expect = 3e-123, Method: Compositional matrix adjust.
 Identities = 255/524 (49%), Positives = 382/524 (73%), Gaps = 31/524 (5%)

Query  18   LKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDerreairaelaaeGMEESQIE  77
            + + LW+AADKLRGS+ A++YK+V LGL+FLKYVSD+++E+ E          + +    
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYE---------ELKQDPYA  59

Query  78   DLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAVMKANP  137
            D  +D ++Y +  +F VP  ARW+++ +N+K KP        +IGQ+ID AM A+ + N 
Sbjct  60   D-EEDQDEYLAENIFWVPKEARWQYINDNAK-KP--------EIGQIIDKAMIAIENENE  109

Query  138  TLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLGNFARAEG  197
            +L G LP+ Y +  +D+ +LG++IDLF       + E R +D++G VYEYF+++FA AEG
Sbjct  110  SLKGVLPKEYARPALDKEKLGDIIDLFTFK--VGDTESRKQDVLGRVYEYFIAKFASAEG  167

Query  198  KRGGEFFTPPSVVKVIVEVLEPSSGRVYDPCCGSGGMFVQTEKFIYEHDGDPKDVSIYGQ  257
            K +GEF+TP+S+VK++VE++EP  GR+YDPCCGSGGMFVQ+E+F+  H+G   D++IYGQ
Sbjct  168  KNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQ  227

Query  258  ESIEETWRMAKMNLAIHGIDNKGLGARWSDTFARDQHPDVQMDYVMANPPFNIKDWARNE  317
            ES   TW++AKMNLAI+GIDN +LG R +DTF  D H +++ DY++ANPPFN  DW+++ 
Sbjct  228  ESNPTTWKLAKMNLAIRGIDN-DLGERNADTFHNDLHKGLKADYILANPPFNASDWGQER  286

Query  318  --EDPRWRFGVPPANNANYAWIQHILYKLAPGGRAGVVMAngsmssnsngegDIRAQIVE  375
              +D RW+FG+PP  NANYAWI+H++ KLAP G AG V+ANGSMS+++++E +IR +++E
Sbjct  287  LLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIE  346

Query  376  ADLVSCMVALPTQLFRSTGIPVCLWFFAKDKAAGKQGSIDRCGQVLFIDARELGDLVDRA  435
             DLV C+V+LP QLF ST IPVCLWF++++K  G++G  +R  ++LFIDARE+G++V R+
Sbjct  347  QDLVECIVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMVSRT  404

Query  436  ERALTNEEIVRIGDTFHAWRGSKSAAVKGIMYEDVPGFCKSATLAEIKATDYALTPGRYV  495
             + +++E+I ++++T+HAWRG++  +     YED++GFCK A L E+K  +Y LTPGRYV
Sbjct  405  LKEFSDEDIQKVAQTYHAWRGTNDKP-----YEDIAGFCKVANLEEVKNNEYILTPGRYV  459

Query  496  GTPAVEDDGEPIDEKMARLSKALLEAFDESARLERVVREQLGRL  539
            G + VE+D EP+++KM R++  L E F  S  LE  +R  L  L
Sbjct  460  GLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

233) hsdM in NC_016804


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  435 bits (1638),  Expect = 3e-123, Method: Compositional matrix adjust.
 Identities = 255/524 (49%), Positives = 382/524 (73%), Gaps = 31/524 (5%)

Query  18   LKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDerreairaelaaeGMEESQIE  77
            + + LW+AADKLRGS+ A++YK+V LGL+FLKYVSD+++E+ E          + +    
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYE---------ELKQDPYA  59

Query  78   DLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAVMKANP  137
            D  +D ++Y +  +F VP  ARW+++ +N+K KP        +IGQ+ID AM A+ + N 
Sbjct  60   D-EEDQDEYLAENIFWVPKEARWQYINDNAK-KP--------EIGQIIDKAMIAIENENE  109

Query  138  TLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLGNFARAEG  197
            +L G LP+ Y +  +D+ +LG++IDLF       + E R +D++G VYEYF+++FA AEG
Sbjct  110  SLKGVLPKEYARPALDKEKLGDIIDLFTFK--VGDTESRKQDVLGRVYEYFIAKFASAEG  167

Query  198  KRGGEFFTPPSVVKVIVEVLEPSSGRVYDPCCGSGGMFVQTEKFIYEHDGDPKDVSIYGQ  257
            K +GEF+TP+S+VK++VE++EP  GR+YDPCCGSGGMFVQ+E+F+  H+G   D++IYGQ
Sbjct  168  KNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQ  227

Query  258  ESIEETWRMAKMNLAIHGIDNKGLGARWSDTFARDQHPDVQMDYVMANPPFNIKDWARNE  317
            ES   TW++AKMNLAI+GIDN +LG R +DTF  D H +++ DY++ANPPFN  DW+++ 
Sbjct  228  ESNPTTWKLAKMNLAIRGIDN-DLGERNADTFHNDLHKGLKADYILANPPFNASDWGQER  286

Query  318  --EDPRWRFGVPPANNANYAWIQHILYKLAPGGRAGVVMAngsmssnsngegDIRAQIVE  375
              +D RW+FG+PP  NANYAWI+H++ KLAP G AG V+ANGSMS+++++E +IR +++E
Sbjct  287  LLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIE  346

Query  376  ADLVSCMVALPTQLFRSTGIPVCLWFFAKDKAAGKQGSIDRCGQVLFIDARELGDLVDRA  435
             DLV C+V+LP QLF ST IPVCLWF++++K  G++G  +R  ++LFIDARE+G++V R+
Sbjct  347  QDLVECIVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMVSRT  404

Query  436  ERALTNEEIVRIGDTFHAWRGSKSAAVKGIMYEDVPGFCKSATLAEIKATDYALTPGRYV  495
             + +++E+I ++++T+HAWRG++  +     YED++GFCK A L E+K  +Y LTPGRYV
Sbjct  405  LKEFSDEDIQKVAQTYHAWRGTNDKP-----YEDIAGFCKVANLEEVKNNEYILTPGRYV  459

Query  496  GTPAVEDDGEPIDEKMARLSKALLEAFDESARLERVVREQLGRL  539
            G + VE+D EP+++KM R++  L E F  S  LE  +R  L  L
Sbjct  460  GLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

234) hsdM in NC_008769


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  435 bits (1638),  Expect = 3e-123, Method: Compositional matrix adjust.
 Identities = 255/524 (49%), Positives = 382/524 (73%), Gaps = 31/524 (5%)

Query  18   LKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDerreairaelaaeGMEESQIE  77
            + + LW+AADKLRGS+ A++YK+V LGL+FLKYVSD+++E+ E          + +    
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYE---------ELKQDPYA  59

Query  78   DLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAVMKANP  137
            D  +D ++Y +  +F VP  ARW+++ +N+K KP        +IGQ+ID AM A+ + N 
Sbjct  60   D-EEDQDEYLAENIFWVPKEARWQYINDNAK-KP--------EIGQIIDKAMIAIENENE  109

Query  138  TLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLGNFARAEG  197
            +L G LP+ Y +  +D+ +LG++IDLF       + E R +D++G VYEYF+++FA AEG
Sbjct  110  SLKGVLPKEYARPALDKEKLGDIIDLFTFK--VGDTESRKQDVLGRVYEYFIAKFASAEG  167

Query  198  KRGGEFFTPPSVVKVIVEVLEPSSGRVYDPCCGSGGMFVQTEKFIYEHDGDPKDVSIYGQ  257
            K +GEF+TP+S+VK++VE++EP  GR+YDPCCGSGGMFVQ+E+F+  H+G   D++IYGQ
Sbjct  168  KNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQ  227

Query  258  ESIEETWRMAKMNLAIHGIDNKGLGARWSDTFARDQHPDVQMDYVMANPPFNIKDWARNE  317
            ES   TW++AKMNLAI+GIDN +LG R +DTF  D H +++ DY++ANPPFN  DW+++ 
Sbjct  228  ESNPTTWKLAKMNLAIRGIDN-DLGERNADTFHNDLHKGLKADYILANPPFNASDWGQER  286

Query  318  --EDPRWRFGVPPANNANYAWIQHILYKLAPGGRAGVVMAngsmssnsngegDIRAQIVE  375
              +D RW+FG+PP  NANYAWI+H++ KLAP G AG V+ANGSMS+++++E +IR +++E
Sbjct  287  LLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIE  346

Query  376  ADLVSCMVALPTQLFRSTGIPVCLWFFAKDKAAGKQGSIDRCGQVLFIDARELGDLVDRA  435
             DLV C+V+LP QLF ST IPVCLWF++++K  G++G  +R  ++LFIDARE+G++V R+
Sbjct  347  QDLVECIVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMVSRT  404

Query  436  ERALTNEEIVRIGDTFHAWRGSKSAAVKGIMYEDVPGFCKSATLAEIKATDYALTPGRYV  495
             + +++E+I ++++T+HAWRG++  +     YED++GFCK A L E+K  +Y LTPGRYV
Sbjct  405  LKEFSDEDIQKVAQTYHAWRGTNDKP-----YEDIAGFCKVANLEEVKNNEYILTPGRYV  459

Query  496  GTPAVEDDGEPIDEKMARLSKALLEAFDESARLERVVREQLGRL  539
            G + VE+D EP+++KM R++  L E F  S  LE  +R  L  L
Sbjct  460  GLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

235) hsdM in NC_012207


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  435 bits (1638),  Expect = 3e-123, Method: Compositional matrix adjust.
 Identities = 255/524 (49%), Positives = 382/524 (73%), Gaps = 31/524 (5%)

Query  18   LKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDerreairaelaaeGMEESQIE  77
            + + LW+AADKLRGS+ A++YK+V LGL+FLKYVSD+++E+ E          + +    
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYE---------ELKQDPYA  59

Query  78   DLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAVMKANP  137
            D  +D ++Y +  +F VP  ARW+++ +N+K KP        +IGQ+ID AM A+ + N 
Sbjct  60   D-EEDQDEYLAENIFWVPKEARWQYINDNAK-KP--------EIGQIIDKAMIAIENENE  109

Query  138  TLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLGNFARAEG  197
            +L G LP+ Y +  +D+ +LG++IDLF       + E R +D++G VYEYF+++FA AEG
Sbjct  110  SLKGVLPKEYARPALDKEKLGDIIDLFTFK--VGDTESRKQDVLGRVYEYFIAKFASAEG  167

Query  198  KRGGEFFTPPSVVKVIVEVLEPSSGRVYDPCCGSGGMFVQTEKFIYEHDGDPKDVSIYGQ  257
            K +GEF+TP+S+VK++VE++EP  GR+YDPCCGSGGMFVQ+E+F+  H+G   D++IYGQ
Sbjct  168  KNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQ  227

Query  258  ESIEETWRMAKMNLAIHGIDNKGLGARWSDTFARDQHPDVQMDYVMANPPFNIKDWARNE  317
            ES   TW++AKMNLAI+GIDN +LG R +DTF  D H +++ DY++ANPPFN  DW+++ 
Sbjct  228  ESNPTTWKLAKMNLAIRGIDN-DLGERNADTFHNDLHKGLKADYILANPPFNASDWGQER  286

Query  318  --EDPRWRFGVPPANNANYAWIQHILYKLAPGGRAGVVMAngsmssnsngegDIRAQIVE  375
              +D RW+FG+PP  NANYAWI+H++ KLAP G AG V+ANGSMS+++++E +IR +++E
Sbjct  287  LLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIE  346

Query  376  ADLVSCMVALPTQLFRSTGIPVCLWFFAKDKAAGKQGSIDRCGQVLFIDARELGDLVDRA  435
             DLV C+V+LP QLF ST IPVCLWF++++K  G++G  +R  ++LFIDARE+G++V R+
Sbjct  347  QDLVECIVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMVSRT  404

Query  436  ERALTNEEIVRIGDTFHAWRGSKSAAVKGIMYEDVPGFCKSATLAEIKATDYALTPGRYV  495
             + +++E+I ++++T+HAWRG++  +     YED++GFCK A L E+K  +Y LTPGRYV
Sbjct  405  LKEFSDEDIQKVAQTYHAWRGTNDKP-----YEDIAGFCKVANLEEVKNNEYILTPGRYV  459

Query  496  GTPAVEDDGEPIDEKMARLSKALLEAFDESARLERVVREQLGRL  539
            G + VE+D EP+++KM R++  L E F  S  LE  +R  L  L
Sbjct  460  GLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

236) hsdM in NC_015848


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  435 bits (1638),  Expect = 3e-123, Method: Compositional matrix adjust.
 Identities = 255/524 (49%), Positives = 382/524 (73%), Gaps = 31/524 (5%)

Query  18   LKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDerreairaelaaeGMEESQIE  77
            + + LW+AADKLRGS+ A++YK+V LGL+FLKYVSD+++E+ E          + +    
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYE---------ELKQDPYA  59

Query  78   DLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAVMKANP  137
            D  +D ++Y +  +F VP  ARW+++ +N+K KP        +IGQ+ID AM A+ + N 
Sbjct  60   D-EEDQDEYLAENIFWVPKEARWQYINDNAK-KP--------EIGQIIDKAMIAIENENE  109

Query  138  TLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLGNFARAEG  197
            +L G LP+ Y +  +D+ +LG++IDLF       + E R +D++G VYEYF+++FA AEG
Sbjct  110  SLKGVLPKEYARPALDKEKLGDIIDLFTFK--VGDTESRKQDVLGRVYEYFIAKFASAEG  167

Query  198  KRGGEFFTPPSVVKVIVEVLEPSSGRVYDPCCGSGGMFVQTEKFIYEHDGDPKDVSIYGQ  257
            K +GEF+TP+S+VK++VE++EP  GR+YDPCCGSGGMFVQ+E+F+  H+G   D++IYGQ
Sbjct  168  KNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQ  227

Query  258  ESIEETWRMAKMNLAIHGIDNKGLGARWSDTFARDQHPDVQMDYVMANPPFNIKDWARNE  317
            ES   TW++AKMNLAI+GIDN +LG R +DTF  D H +++ DY++ANPPFN  DW+++ 
Sbjct  228  ESNPTTWKLAKMNLAIRGIDN-DLGERNADTFHNDLHKGLKADYILANPPFNASDWGQER  286

Query  318  --EDPRWRFGVPPANNANYAWIQHILYKLAPGGRAGVVMAngsmssnsngegDIRAQIVE  375
              +D RW+FG+PP  NANYAWI+H++ KLAP G AG V+ANGSMS+++++E +IR +++E
Sbjct  287  LLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIE  346

Query  376  ADLVSCMVALPTQLFRSTGIPVCLWFFAKDKAAGKQGSIDRCGQVLFIDARELGDLVDRA  435
             DLV C+V+LP QLF ST IPVCLWF++++K  G++G  +R  ++LFIDARE+G++V R+
Sbjct  347  QDLVECIVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMVSRT  404

Query  436  ERALTNEEIVRIGDTFHAWRGSKSAAVKGIMYEDVPGFCKSATLAEIKATDYALTPGRYV  495
             + +++E+I ++++T+HAWRG++  +     YED++GFCK A L E+K  +Y LTPGRYV
Sbjct  405  LKEFSDEDIQKVAQTYHAWRGTNDKP-----YEDIAGFCKVANLEEVKNNEYILTPGRYV  459

Query  496  GTPAVEDDGEPIDEKMARLSKALLEAFDESARLERVVREQLGRL  539
            G + VE+D EP+++KM R++  L E F  S  LE  +R  L  L
Sbjct  460  GLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

237) hsdM in NC_019950


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  435 bits (1639),  Expect = 3e-123, Method: Compositional matrix adjust.
 Identities = 256/524 (49%), Positives = 381/524 (73%), Gaps = 31/524 (5%)

Query  18   LKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDerreairaelaaDGMEESQIE  77
            + + LW+AADKLRGS+ A++YK+V LGL+FLKYVSD+++E+          + + +    
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKY---------EELKQDPYA  59

Query  78   DLIDDPEEYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAVMKANP  137
            D  +D +EY +  +F VP  ARW+++ +N+K KP        +IGQ+ID AM A+ + N 
Sbjct  60   D-EEDQDEYLAENIFWVPKEARWQYINDNAK-KP--------EIGQIIDKAMIAIENENE  109

Query  138  TLGGTLPLLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLGNFARAEG  197
            +L G LP  Y +  +D+ +LG++IDLF       + E R +D++G VYEYF+++FA AEG
Sbjct  110  SLKGVLPKEYARPALDKEKLGDIIDLFTFK--VGDTESRKQDVLGRVYEYFIAKFASAEG  167

Query  198  KRGGEFFTPPSVVKVIVEVLEPSSGRVYDPCCGSGGMFVQTEKFIYEHDGDPKDVSIYGQ  257
            K +GEF+TP+S+VK++VE++EP  GR+YDPCCGSGGMFVQ+E+F+  H+G   D++IYGQ
Sbjct  168  KNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQ  227

Query  258  ESIEETWRMAKMNLAIHGIDNKGLGARWGDTFARDQHPDMQMDYVMANPPFNIKDWARNE  317
            ES   TW++AKMNLAI+GIDN +LG R +DTF  D H +++ DY++ANPPFN  DW+++ 
Sbjct  228  ESNPTTWKLAKMNLAIRGIDN-DLGERNADTFHNDLHKGLKADYILANPPFNASDWGQER  286

Query  318  --EDPRWRFGVPPANNANYAWIQHILYKLAPGGRAGVVMAngsmssnsngegDIRAQIVE  375
              +D RW+FG+PP  NANYAWI+H++ KLAP G AG V+ANGSMS+++++E +IR +++E
Sbjct  287  LLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIE  346

Query  376  ADLVSCMVALPTQLFRSTGIPVCLWFFAKDKAAGKQGSIDRCGQVLFIDARELGDLVDRA  435
             DLV C+V+LP QLF ST IPVCLWF++++K  G++G  +R  ++LFIDARE+G++V R+
Sbjct  347  QDLVECIVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMVSRT  404

Query  436  ERALTNEEIVRIGDTFHAWRGSKSAAAKGIMYEDVPGFCKSATLAEIKATDYALTPGRYV  495
             + +++E+I ++++T+HAWRG++  +     YED++GFCK A L E+K  +Y LTPGRYV
Sbjct  405  LKEFSDEDIQKVAQTYHAWRGTNDKP-----YEDIAGFCKVANLEEVKNNEYILTPGRYV  459

Query  496  GTPAVEDDGEPIDEKMARLTKALLEAFDESARLERVVREQLGRL  539
            G + VE+D EP+++KM R+T  L E F  S  LE  +R  L  L
Sbjct  460  GLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

238) hsdM in NC_019965


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  435 bits (1637),  Expect = 3e-123, Method: Compositional matrix adjust.
 Identities = 255/524 (49%), Positives = 381/524 (73%), Gaps = 31/524 (5%)

Query  18   LKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDerreairaelaaDGMEESQIE  77
            + + LW+AADKLRGS+ A++YK+V LGL+FLKYVSD+++E+          + + +    
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKY---------EELKQDPYA  59

Query  78   DLIDDPEEYQGYGVFVVPVSTRWKFLAENTKGKPAVSGEPAKNIGQLIDEAMDAVMKANP  137
            D  +D +EY +  +F VP  +RW+++ +N+K KP        +IGQ+ID AM A+ + N 
Sbjct  60   D-EEDQDEYLAENIFWVPKEARWQYINDNAK-KP--------EIGQIIDKAMIAIENENE  109

Query  138  TLGGTLPLLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLGNFARAEG  197
            +L G LP  Y +  +D+ +LG++IDLF       + E R +D++G VYEYF+++FA AEG
Sbjct  110  SLKGVLPKEYARPALDKEKLGDIIDLFTFK--VGDTESRKQDVLGRVYEYFIAKFASAEG  167

Query  198  KRGGEFFTPPSVVKVIVEVLEPSSGRVYDPCCGSGGMFVQTEKFIYEHDGDPKDVSIYGQ  257
            K +GEF+TP+S+VK++VE++EP  GR+YDPCCGSGGMFVQ+E+F+  H+G   D++IYGQ
Sbjct  168  KNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQ  227

Query  258  ESIEETWRMAKMNLAIHGIDNKGLGARWGDTFARDQHPDMQMDYVMANPPFNIKDWARNE  317
            ES   TW++AKMNLAI+GIDN +LG R +DTF  D H +++ DY++ANPPFN  DW+++ 
Sbjct  228  ESNPTTWKLAKMNLAIRGIDN-DLGERNADTFHNDLHKGLKADYILANPPFNASDWGQER  286

Query  318  --EDPRWRFGVPPANNANYAWIQHILYKLAPGGRAGVVMAngsmssnsngegDIRAQIVE  375
              +D RW+FG+PP  NANYAWI+H++ KLAP G AG V+ANGSMS+++++E +IR +++E
Sbjct  287  LLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIE  346

Query  376  ADLVSCMVALPTQLFRSTGIPVCLWFFAKDKAAGKQGSIDRCGQVLFIDARELGDLVDRA  435
             DLV C+V+LP QLF ST IPVCLWF++++K  G++G  +R  ++LFIDARE+G++V R+
Sbjct  347  QDLVECIVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMVSRT  404

Query  436  ERALTNEEIVRIGDTFHAWRGSKSAAVKGIMYEDVPGFCKSATLAEIKATDYALTPGRYV  495
             + +++E+I ++++T+HAWRG++  +     YED++GFCK A L E+K  +Y LTPGRYV
Sbjct  405  LKEFSDEDIQKVAQTYHAWRGTNDKP-----YEDIAGFCKVANLEEVKNNEYILTPGRYV  459

Query  496  GTPAVEDDGEPIDEKMARLTKALLEAFDESARLERVVREQLGRL  539
            G + VE+D EP+++KM R+T  L E F  S  LE  +R  L  L
Sbjct  460  GLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

239) J112_14765 in NC_021054


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  435 bits (1638),  Expect = 3e-123, Method: Compositional matrix adjust.
 Identities = 255/524 (49%), Positives = 382/524 (73%), Gaps = 31/524 (5%)

Query  18   LKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDerreairaelaaeGMEESQIE  77
            + + LW+AADKLRGS+ A++YK+V LGL+FLKYVSD+++E+ E          + +    
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYE---------ELKQDPYA  59

Query  78   DLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAVMKANP  137
            D  +D ++Y +  +F VP  ARW+++ +N+K KP        +IGQ+ID AM A+ + N 
Sbjct  60   D-EEDQDEYLAENIFWVPKEARWQYINDNAK-KP--------EIGQIIDKAMIAIENENE  109

Query  138  TLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLGNFARAEG  197
            +L G LP+ Y +  +D+ +LG++IDLF       + E R +D++G VYEYF+++FA AEG
Sbjct  110  SLKGVLPKEYARPALDKEKLGDIIDLFTFK--VGDTESRKQDVLGRVYEYFIAKFASAEG  167

Query  198  KRGGEFFTPPSVVKVIVEVLEPSSGRVYDPCCGSGGMFVQTEKFIYEHDGDPKDVSIYGQ  257
            K +GEF+TP+S+VK++VE++EP  GR+YDPCCGSGGMFVQ+E+F+  H+G   D++IYGQ
Sbjct  168  KNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQ  227

Query  258  ESIEETWRMAKMNLAIHGIDNKGLGARWSDTFARDQHPDVQMDYVMANPPFNIKDWARNE  317
            ES   TW++AKMNLAI+GIDN +LG R +DTF  D H +++ DY++ANPPFN  DW+++ 
Sbjct  228  ESNPTTWKLAKMNLAIRGIDN-DLGERNADTFHNDLHKGLKADYILANPPFNASDWGQER  286

Query  318  --EDPRWRFGVPPANNANYAWIQHILYKLAPGGRAGVVMAngsmssnsngegDIRAQIVE  375
              +D RW+FG+PP  NANYAWI+H++ KLAP G AG V+ANGSMS+++++E +IR +++E
Sbjct  287  LLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIE  346

Query  376  ADLVSCMVALPTQLFRSTGIPVCLWFFAKDKAAGKQGSIDRCGQVLFIDARELGDLVDRA  435
             DLV C+V+LP QLF ST IPVCLWF++++K  G++G  +R  ++LFIDARE+G++V R+
Sbjct  347  QDLVECIVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMVSRT  404

Query  436  ERALTNEEIVRIGDTFHAWRGSKSAAVKGIMYEDVPGFCKSATLAEIKATDYALTPGRYV  495
             + +++E+I ++++T+HAWRG++  +     YED++GFCK A L E+K  +Y LTPGRYV
Sbjct  405  LKEFSDEDIQKVAQTYHAWRGTNDKP-----YEDIAGFCKVANLEEVKNNEYILTPGRYV  459

Query  496  GTPAVEDDGEPIDEKMARLSKALLEAFDESARLERVVREQLGRL  539
            G + VE+D EP+++KM R++  L E F  S  LE  +R  L  L
Sbjct  460  GLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

240) J113_19130 in NC_021193


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  435 bits (1638),  Expect = 3e-123, Method: Compositional matrix adjust.
 Identities = 257/525 (49%), Positives = 383/525 (73%), Gaps = 33/525 (6%)

Query  18   LKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDerreairaelaaeGMEESQIE  77
            + + LW+AADKLRGS+ A++YK+V LGL+FLKYVSD+++E+ E          + +    
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYE---------ELKQDPYA  59

Query  78   DLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAVMKANP  137
            D  +D ++Y +  +F VP  ARW+++ +N+K KP        +IGQ+ID AM A+ + N 
Sbjct  60   D-EEDQDEYLAENIFWVPKEARWQYINDNAK-KP--------EIGQIIDKAMIAIENENE  109

Query  138  TLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQD-EHRARDLMGEVYEYFLGNFARAE  196
            +L G LP+ Y +  +D+ +LG++IDLF    F   D E R +D++G VYEYF+++FA AE
Sbjct  110  SLKGVLPKEYARPALDKEKLGDIIDLFT---FKVGDTESRKQDVLGRVYEYFIAKFASAE  166

Query  197  GKRGGEFFTPPSVVKVIVEVLEPSSGRVYDPCCGSGGMFVQTEKFIYEHDGDPKDVSIYG  256
            GK +GEF+TP+S+VK++VE++EP  GR+YDPCCGSGGMFVQ+E+F+  H+G   D++IYG
Sbjct  167  GKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYG  226

Query  257  QESIEETWRMAKMNLAIHGIDNKGLGARWSDTFARDQHPDVQMDYVMANPPFNIKDWARN  316
            QES   TW++AKMNLAI+GIDN +LG R +DTF  D H +++ DY++ANPPFN  DW+++
Sbjct  227  QESNPTTWKLAKMNLAIRGIDN-DLGERNADTFHNDLHKGLKADYILANPPFNASDWGQE  285

Query  317  E--EDPRWRFGVPPANNANYAWIQHILYKLAPGGRAGVVMAngsmssnsngegDIRAQIV  374
               +D RW+FG+PP  NANYAWI+H++ KLAP G AG V+ANGSMS+++++E +IR +++
Sbjct  286  RLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLI  345

Query  375  EADLVSCMVALPTQLFRSTGIPVCLWFFAKDKAAGKQGSIDRCGQVLFIDARELGDLVDR  434
            E DLV C+V+LP QLF ST IPVCLWF++++K  G++G  +R  ++LFIDARE+G++V R
Sbjct  346  EQDLVECIVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMVSR  403

Query  435  AERALTNEEIVRIGDTFHAWRGSKSAAVKGIMYEDVPGFCKSATLAEIKATDYALTPGRY  494
            + + +++E+I ++++T+HAWRG++  +     YED++GFCK A L E+K  +Y LTPGRY
Sbjct  404  TLKEFSDEDIQKVAQTYHAWRGTNDKP-----YEDIAGFCKVANLEEVKNNEYILTPGRY  458

Query  495  VGTPAVEDDGEPIDEKMARLSKALLEAFDESARLERVVREQLGRL  539
            VG + VE+D EP+++KM R++  L E F  S  LE  +R  L  L
Sbjct  459  VGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

241) CCDC5180_2499 in NC_017522


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  435 bits (1638),  Expect = 3e-123, Method: Compositional matrix adjust.
 Identities = 255/524 (49%), Positives = 382/524 (73%), Gaps = 31/524 (5%)

Query  18   LKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDerreairaelaaeGMEESQIE  77
            + + LW+AADKLRGS+ A++YK+V LGL+FLKYVSD+++E+ E          + +    
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYE---------ELKQDPYA  59

Query  78   DLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAVMKANP  137
            D  +D ++Y +  +F VP  ARW+++ +N+K KP        +IGQ+ID AM A+ + N 
Sbjct  60   D-EEDQDEYLAENIFWVPKEARWQYINDNAK-KP--------EIGQIIDKAMIAIENENE  109

Query  138  TLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLGNFARAEG  197
            +L G LP+ Y +  +D+ +LG++IDLF       + E R +D++G VYEYF+++FA AEG
Sbjct  110  SLKGVLPKEYARPALDKEKLGDIIDLFTFK--VGDTESRKQDVLGRVYEYFIAKFASAEG  167

Query  198  KRGGEFFTPPSVVKVIVEVLEPSSGRVYDPCCGSGGMFVQTEKFIYEHDGDPKDVSIYGQ  257
            K +GEF+TP+S+VK++VE++EP  GR+YDPCCGSGGMFVQ+E+F+  H+G   D++IYGQ
Sbjct  168  KNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQ  227

Query  258  ESIEETWRMAKMNLAIHGIDNKGLGARWSDTFARDQHPDVQMDYVMANPPFNIKDWARNE  317
            ES   TW++AKMNLAI+GIDN +LG R +DTF  D H +++ DY++ANPPFN  DW+++ 
Sbjct  228  ESNPTTWKLAKMNLAIRGIDN-DLGERNADTFHNDLHKGLKADYILANPPFNASDWGQER  286

Query  318  --EDPRWRFGVPPANNANYAWIQHILYKLAPGGRAGVVMAngsmssnsngegDIRAQIVE  375
              +D RW+FG+PP  NANYAWI+H++ KLAP G AG V+ANGSMS+++++E +IR +++E
Sbjct  287  LLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIE  346

Query  376  ADLVSCMVALPTQLFRSTGIPVCLWFFAKDKAAGKQGSIDRCGQVLFIDARELGDLVDRA  435
             DLV C+V+LP QLF ST IPVCLWF++++K  G++G  +R  ++LFIDARE+G++V R+
Sbjct  347  QDLVECIVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMVSRT  404

Query  436  ERALTNEEIVRIGDTFHAWRGSKSAAVKGIMYEDVPGFCKSATLAEIKATDYALTPGRYV  495
             + +++E+I ++++T+HAWRG++  +     YED++GFCK A L E+K  +Y LTPGRYV
Sbjct  405  LKEFSDEDIQKVAQTYHAWRGTNDKP-----YEDIAGFCKVANLEEVKNNEYILTPGRYV  459

Query  496  GTPAVEDDGEPIDEKMARLSKALLEAFDESARLERVVREQLGRL  539
            G + VE+D EP+++KM R++  L E F  S  LE  +R  L  L
Sbjct  460  GLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

242) hsdM in NC_002755


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  435 bits (1638),  Expect = 3e-123, Method: Compositional matrix adjust.
 Identities = 255/524 (49%), Positives = 382/524 (73%), Gaps = 31/524 (5%)

Query  18   LKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDerreairaelaaeGMEESQIE  77
            + + LW+AADKLRGS+ A++YK+V LGL+FLKYVSD+++E+ E          + +    
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYE---------ELKQDPYA  59

Query  78   DLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAVMKANP  137
            D  +D ++Y +  +F VP  ARW+++ +N+K KP        +IGQ+ID AM A+ + N 
Sbjct  60   D-EEDQDEYLAENIFWVPKEARWQYINDNAK-KP--------EIGQIIDKAMIAIENENE  109

Query  138  TLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLGNFARAEG  197
            +L G LP+ Y +  +D+ +LG++IDLF       + E R +D++G VYEYF+++FA AEG
Sbjct  110  SLKGVLPKEYARPALDKEKLGDIIDLFTFK--VGDTESRKQDVLGRVYEYFIAKFASAEG  167

Query  198  KRGGEFFTPPSVVKVIVEVLEPSSGRVYDPCCGSGGMFVQTEKFIYEHDGDPKDVSIYGQ  257
            K +GEF+TP+S+VK++VE++EP  GR+YDPCCGSGGMFVQ+E+F+  H+G   D++IYGQ
Sbjct  168  KNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQ  227

Query  258  ESIEETWRMAKMNLAIHGIDNKGLGARWSDTFARDQHPDVQMDYVMANPPFNIKDWARNE  317
            ES   TW++AKMNLAI+GIDN +LG R +DTF  D H +++ DY++ANPPFN  DW+++ 
Sbjct  228  ESNPTTWKLAKMNLAIRGIDN-DLGERNADTFHNDLHKGLKADYILANPPFNASDWGQER  286

Query  318  --EDPRWRFGVPPANNANYAWIQHILYKLAPGGRAGVVMAngsmssnsngegDIRAQIVE  375
              +D RW+FG+PP  NANYAWI+H++ KLAP G AG V+ANGSMS+++++E +IR +++E
Sbjct  287  LLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIE  346

Query  376  ADLVSCMVALPTQLFRSTGIPVCLWFFAKDKAAGKQGSIDRCGQVLFIDARELGDLVDRA  435
             DLV C+V+LP QLF ST IPVCLWF++++K  G++G  +R  ++LFIDARE+G++V R+
Sbjct  347  QDLVECIVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMVSRT  404

Query  436  ERALTNEEIVRIGDTFHAWRGSKSAAVKGIMYEDVPGFCKSATLAEIKATDYALTPGRYV  495
             + +++E+I ++++T+HAWRG++  +     YED++GFCK A L E+K  +Y LTPGRYV
Sbjct  405  LKEFSDEDIQKVAQTYHAWRGTNDKP-----YEDIAGFCKVANLEEVKNNEYILTPGRYV  459

Query  496  GTPAVEDDGEPIDEKMARLSKALLEAFDESARLERVVREQLGRL  539
            G + VE+D EP+++KM R++  L E F  S  LE  +R  L  L
Sbjct  460  GLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

243) J114_14705 in NC_021194


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  435 bits (1638),  Expect = 3e-123, Method: Compositional matrix adjust.
 Identities = 255/524 (49%), Positives = 382/524 (73%), Gaps = 31/524 (5%)

Query  18   LKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDerreairaelaaeGMEESQIE  77
            + + LW+AADKLRGS+ A++YK+V LGL+FLKYVSD+++E+ E          + +    
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYE---------ELKQDPYA  59

Query  78   DLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAVMKANP  137
            D  +D ++Y +  +F VP  ARW+++ +N+K KP        +IGQ+ID AM A+ + N 
Sbjct  60   D-EEDQDEYLAENIFWVPKEARWQYINDNAK-KP--------EIGQIIDKAMIAIENENE  109

Query  138  TLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLGNFARAEG  197
            +L G LP+ Y +  +D+ +LG++IDLF       + E R +D++G VYEYF+++FA AEG
Sbjct  110  SLKGVLPKEYARPALDKEKLGDIIDLFTFK--VGDTESRKQDVLGRVYEYFIAKFASAEG  167

Query  198  KRGGEFFTPPSVVKVIVEVLEPSSGRVYDPCCGSGGMFVQTEKFIYEHDGDPKDVSIYGQ  257
            K +GEF+TP+S+VK++VE++EP  GR+YDPCCGSGGMFVQ+E+F+  H+G   D++IYGQ
Sbjct  168  KNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQ  227

Query  258  ESIEETWRMAKMNLAIHGIDNKGLGARWSDTFARDQHPDVQMDYVMANPPFNIKDWARNE  317
            ES   TW++AKMNLAI+GIDN +LG R +DTF  D H +++ DY++ANPPFN  DW+++ 
Sbjct  228  ESNPTTWKLAKMNLAIRGIDN-DLGERNADTFHNDLHKGLKADYILANPPFNASDWGQER  286

Query  318  --EDPRWRFGVPPANNANYAWIQHILYKLAPGGRAGVVMAngsmssnsngegDIRAQIVE  375
              +D RW+FG+PP  NANYAWI+H++ KLAP G AG V+ANGSMS+++++E +IR +++E
Sbjct  287  LLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIE  346

Query  376  ADLVSCMVALPTQLFRSTGIPVCLWFFAKDKAAGKQGSIDRCGQVLFIDARELGDLVDRA  435
             DLV C+V+LP QLF ST IPVCLWF++++K  G++G  +R  ++LFIDARE+G++V R+
Sbjct  347  QDLVECIVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMVSRT  404

Query  436  ERALTNEEIVRIGDTFHAWRGSKSAAVKGIMYEDVPGFCKSATLAEIKATDYALTPGRYV  495
             + +++E+I ++++T+HAWRG++  +     YED++GFCK A L E+K  +Y LTPGRYV
Sbjct  405  LKEFSDEDIQKVAQTYHAWRGTNDKP-----YEDIAGFCKVANLEEVKNNEYILTPGRYV  459

Query  496  GTPAVEDDGEPIDEKMARLSKALLEAFDESARLERVVREQLGRL  539
            G + VE+D EP+++KM R++  L E F  S  LE  +R  L  L
Sbjct  460  GLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

244) M943_14240 in NC_021740


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  435 bits (1638),  Expect = 3e-123, Method: Compositional matrix adjust.
 Identities = 255/524 (49%), Positives = 382/524 (73%), Gaps = 31/524 (5%)

Query  18   LKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDerreairaelaaeGMEESQIE  77
            + + LW+AADKLRGS+ A++YK+V LGL+FLKYVSD+++E+ E          + +    
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYE---------ELKQDPYA  59

Query  78   DLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAVMKANP  137
            D  +D ++Y +  +F VP  ARW+++ +N+K KP        +IGQ+ID AM A+ + N 
Sbjct  60   D-EEDQDEYLAENIFWVPKEARWQYINDNAK-KP--------EIGQIIDKAMIAIENENE  109

Query  138  TLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLGNFARAEG  197
            +L G LP+ Y +  +D+ +LG++IDLF       + E R +D++G VYEYF+++FA AEG
Sbjct  110  SLKGVLPKEYARPALDKEKLGDIIDLFTFK--VGDTESRKQDVLGRVYEYFIAKFASAEG  167

Query  198  KRGGEFFTPPSVVKVIVEVLEPSSGRVYDPCCGSGGMFVQTEKFIYEHDGDPKDVSIYGQ  257
            K +GEF+TP+S+VK++VE++EP  GR+YDPCCGSGGMFVQ+E+F+  H+G   D++IYGQ
Sbjct  168  KNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQ  227

Query  258  ESIEETWRMAKMNLAIHGIDNKGLGARWSDTFARDQHPDVQMDYVMANPPFNIKDWARNE  317
            ES   TW++AKMNLAI+GIDN +LG R +DTF  D H +++ DY++ANPPFN  DW+++ 
Sbjct  228  ESNPTTWKLAKMNLAIRGIDN-DLGERNADTFHNDLHKGLKADYILANPPFNASDWGQER  286

Query  318  --EDPRWRFGVPPANNANYAWIQHILYKLAPGGRAGVVMAngsmssnsngegDIRAQIVE  375
              +D RW+FG+PP  NANYAWI+H++ KLAP G AG V+ANGSMS+++++E +IR +++E
Sbjct  287  LLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIE  346

Query  376  ADLVSCMVALPTQLFRSTGIPVCLWFFAKDKAAGKQGSIDRCGQVLFIDARELGDLVDRA  435
             DLV C+V+LP QLF ST IPVCLWF++++K  G++G  +R  ++LFIDARE+G++V R+
Sbjct  347  QDLVECIVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMVSRT  404

Query  436  ERALTNEEIVRIGDTFHAWRGSKSAAVKGIMYEDVPGFCKSATLAEIKATDYALTPGRYV  495
             + +++E+I ++++T+HAWRG++  +     YED++GFCK A L E+K  +Y LTPGRYV
Sbjct  405  LKEFSDEDIQKVAQTYHAWRGTNDKP-----YEDIAGFCKVANLEEVKNNEYILTPGRYV  459

Query  496  GTPAVEDDGEPIDEKMARLSKALLEAFDESARLERVVREQLGRL  539
            G + VE+D EP+++KM R++  L E F  S  LE  +R  L  L
Sbjct  460  GLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

245) hsdM in NC_020559


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  435 bits (1638),  Expect = 3e-123, Method: Compositional matrix adjust.
 Identities = 255/524 (49%), Positives = 382/524 (73%), Gaps = 31/524 (5%)

Query  18   LKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDerreairaelaaeGMEESQIE  77
            + + LW+AADKLRGS+ A++YK+V LGL+FLKYVSD+++E+ E          + +    
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYE---------ELKQDPYA  59

Query  78   DLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAVMKANP  137
            D  +D ++Y +  +F VP  ARW+++ +N+K KP        +IGQ+ID AM A+ + N 
Sbjct  60   D-EEDQDEYLAENIFWVPKEARWQYINDNAK-KP--------EIGQIIDKAMIAIENENE  109

Query  138  TLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLGNFARAEG  197
            +L G LP+ Y +  +D+ +LG++IDLF       + E R +D++G VYEYF+++FA AEG
Sbjct  110  SLKGVLPKEYARPALDKEKLGDIIDLFTFK--VGDTESRKQDVLGRVYEYFIAKFASAEG  167

Query  198  KRGGEFFTPPSVVKVIVEVLEPSSGRVYDPCCGSGGMFVQTEKFIYEHDGDPKDVSIYGQ  257
            K +GEF+TP+S+VK++VE++EP  GR+YDPCCGSGGMFVQ+E+F+  H+G   D++IYGQ
Sbjct  168  KNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQ  227

Query  258  ESIEETWRMAKMNLAIHGIDNKGLGARWSDTFARDQHPDVQMDYVMANPPFNIKDWARNE  317
            ES   TW++AKMNLAI+GIDN +LG R +DTF  D H +++ DY++ANPPFN  DW+++ 
Sbjct  228  ESNPTTWKLAKMNLAIRGIDN-DLGERNADTFHNDLHKGLKADYILANPPFNASDWGQER  286

Query  318  --EDPRWRFGVPPANNANYAWIQHILYKLAPGGRAGVVMAngsmssnsngegDIRAQIVE  375
              +D RW+FG+PP  NANYAWI+H++ KLAP G AG V+ANGSMS+++++E +IR +++E
Sbjct  287  LLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIE  346

Query  376  ADLVSCMVALPTQLFRSTGIPVCLWFFAKDKAAGKQGSIDRCGQVLFIDARELGDLVDRA  435
             DLV C+V+LP QLF ST IPVCLWF++++K  G++G  +R  ++LFIDARE+G++V R+
Sbjct  347  QDLVECIVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMVSRT  404

Query  436  ERALTNEEIVRIGDTFHAWRGSKSAAVKGIMYEDVPGFCKSATLAEIKATDYALTPGRYV  495
             + +++E+I ++++T+HAWRG++  +     YED++GFCK A L E+K  +Y LTPGRYV
Sbjct  405  LKEFSDEDIQKVAQTYHAWRGTNDKP-----YEDIAGFCKVANLEEVKNNEYILTPGRYV  459

Query  496  GTPAVEDDGEPIDEKMARLSKALLEAFDESARLERVVREQLGRL  539
            G + VE+D EP+++KM R++  L E F  S  LE  +R  L  L
Sbjct  460  GLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

246) TBHG_02688 in NC_022350


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  435 bits (1638),  Expect = 3e-123, Method: Compositional matrix adjust.
 Identities = 255/524 (49%), Positives = 382/524 (73%), Gaps = 31/524 (5%)

Query  18   LKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDerreairaelaaeGMEESQIE  77
            + + LW+AADKLRGS+ A++YK+V LGL+FLKYVSD+++E+ E          + +    
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYE---------ELKQDPYA  59

Query  78   DLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAVMKANP  137
            D  +D ++Y +  +F VP  ARW+++ +N+K KP        +IGQ+ID AM A+ + N 
Sbjct  60   D-EEDQDEYLAENIFWVPKEARWQYINDNAK-KP--------EIGQIIDKAMIAIENENE  109

Query  138  TLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLGNFARAEG  197
            +L G LP+ Y +  +D+ +LG++IDLF       + E R +D++G VYEYF+++FA AEG
Sbjct  110  SLKGVLPKEYARPALDKEKLGDIIDLFTFK--VGDTESRKQDVLGRVYEYFIAKFASAEG  167

Query  198  KRGGEFFTPPSVVKVIVEVLEPSSGRVYDPCCGSGGMFVQTEKFIYEHDGDPKDVSIYGQ  257
            K +GEF+TP+S+VK++VE++EP  GR+YDPCCGSGGMFVQ+E+F+  H+G   D++IYGQ
Sbjct  168  KNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQ  227

Query  258  ESIEETWRMAKMNLAIHGIDNKGLGARWSDTFARDQHPDVQMDYVMANPPFNIKDWARNE  317
            ES   TW++AKMNLAI+GIDN +LG R +DTF  D H +++ DY++ANPPFN  DW+++ 
Sbjct  228  ESNPTTWKLAKMNLAIRGIDN-DLGERNADTFHNDLHKGLKADYILANPPFNASDWGQER  286

Query  318  --EDPRWRFGVPPANNANYAWIQHILYKLAPGGRAGVVMAngsmssnsngegDIRAQIVE  375
              +D RW+FG+PP  NANYAWI+H++ KLAP G AG V+ANGSMS+++++E +IR +++E
Sbjct  287  LLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIE  346

Query  376  ADLVSCMVALPTQLFRSTGIPVCLWFFAKDKAAGKQGSIDRCGQVLFIDARELGDLVDRA  435
             DLV C+V+LP QLF ST IPVCLWF++++K  G++G  +R  ++LFIDARE+G++V R+
Sbjct  347  QDLVECIVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMVSRT  404

Query  436  ERALTNEEIVRIGDTFHAWRGSKSAAVKGIMYEDVPGFCKSATLAEIKATDYALTPGRYV  495
             + +++E+I ++++T+HAWRG++  +     YED++GFCK A L E+K  +Y LTPGRYV
Sbjct  405  LKEFSDEDIQKVAQTYHAWRGTNDKP-----YEDIAGFCKVANLEEVKNNEYILTPGRYV  459

Query  496  GTPAVEDDGEPIDEKMARLSKALLEAFDESARLERVVREQLGRL  539
            G + VE+D EP+++KM R++  L E F  S  LE  +R  L  L
Sbjct  460  GLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

247) MRGA423_17110 in NC_017528


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  435 bits (1638),  Expect = 3e-123, Method: Compositional matrix adjust.
 Identities = 255/524 (49%), Positives = 382/524 (73%), Gaps = 31/524 (5%)

Query  18   LKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDerreairaelaaeGMEESQIE  77
            + + LW+AADKLRGS+ A++YK+V LGL+FLKYVSD+++E+ E          + +    
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYE---------ELKQDPYA  59

Query  78   DLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAVMKANP  137
            D  +D ++Y +  +F VP  ARW+++ +N+K KP        +IGQ+ID AM A+ + N 
Sbjct  60   D-EEDQDEYLAENIFWVPKEARWQYINDNAK-KP--------EIGQIIDKAMIAIENENE  109

Query  138  TLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLGNFARAEG  197
            +L G LP+ Y +  +D+ +LG++IDLF       + E R +D++G VYEYF+++FA AEG
Sbjct  110  SLKGVLPKEYARPALDKEKLGDIIDLFTFK--VGDTESRKQDVLGRVYEYFIAKFASAEG  167

Query  198  KRGGEFFTPPSVVKVIVEVLEPSSGRVYDPCCGSGGMFVQTEKFIYEHDGDPKDVSIYGQ  257
            K +GEF+TP+S+VK++VE++EP  GR+YDPCCGSGGMFVQ+E+F+  H+G   D++IYGQ
Sbjct  168  KNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQ  227

Query  258  ESIEETWRMAKMNLAIHGIDNKGLGARWSDTFARDQHPDVQMDYVMANPPFNIKDWARNE  317
            ES   TW++AKMNLAI+GIDN +LG R +DTF  D H +++ DY++ANPPFN  DW+++ 
Sbjct  228  ESNPTTWKLAKMNLAIRGIDN-DLGERNADTFHNDLHKGLKADYILANPPFNASDWGQER  286

Query  318  --EDPRWRFGVPPANNANYAWIQHILYKLAPGGRAGVVMAngsmssnsngegDIRAQIVE  375
              +D RW+FG+PP  NANYAWI+H++ KLAP G AG V+ANGSMS+++++E +IR +++E
Sbjct  287  LLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIE  346

Query  376  ADLVSCMVALPTQLFRSTGIPVCLWFFAKDKAAGKQGSIDRCGQVLFIDARELGDLVDRA  435
             DLV C+V+LP QLF ST IPVCLWF++++K  G++G  +R  ++LFIDARE+G++V R+
Sbjct  347  QDLVECIVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMVSRT  404

Query  436  ERALTNEEIVRIGDTFHAWRGSKSAAVKGIMYEDVPGFCKSATLAEIKATDYALTPGRYV  495
             + +++E+I ++++T+HAWRG++  +     YED++GFCK A L E+K  +Y LTPGRYV
Sbjct  405  LKEFSDEDIQKVAQTYHAWRGTNDKP-----YEDIAGFCKVANLEEVKNNEYILTPGRYV  459

Query  496  GTPAVEDDGEPIDEKMARLSKALLEAFDESARLERVVREQLGRL  539
            G + VE+D EP+++KM R++  L E F  S  LE  +R  L  L
Sbjct  460  GLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

248) MT7199_2789 in NC_020089


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  435 bits (1638),  Expect = 3e-123, Method: Compositional matrix adjust.
 Identities = 255/524 (49%), Positives = 382/524 (73%), Gaps = 31/524 (5%)

Query  18   LKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDerreairaelaaeGMEESQIE  77
            + + LW+AADKLRGS+ A++YK+V LGL+FLKYVSD+++E+ E          + +    
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYE---------ELKQDPYA  59

Query  78   DLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAVMKANP  137
            D  +D ++Y +  +F VP  ARW+++ +N+K KP        +IGQ+ID AM A+ + N 
Sbjct  60   D-EEDQDEYLAENIFWVPKEARWQYINDNAK-KP--------EIGQIIDKAMIAIENENE  109

Query  138  TLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLGNFARAEG  197
            +L G LP+ Y +  +D+ +LG++IDLF       + E R +D++G VYEYF+++FA AEG
Sbjct  110  SLKGVLPKEYARPALDKEKLGDIIDLFTFK--VGDTESRKQDVLGRVYEYFIAKFASAEG  167

Query  198  KRGGEFFTPPSVVKVIVEVLEPSSGRVYDPCCGSGGMFVQTEKFIYEHDGDPKDVSIYGQ  257
            K +GEF+TP+S+VK++VE++EP  GR+YDPCCGSGGMFVQ+E+F+  H+G   D++IYGQ
Sbjct  168  KNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQ  227

Query  258  ESIEETWRMAKMNLAIHGIDNKGLGARWSDTFARDQHPDVQMDYVMANPPFNIKDWARNE  317
            ES   TW++AKMNLAI+GIDN +LG R +DTF  D H +++ DY++ANPPFN  DW+++ 
Sbjct  228  ESNPTTWKLAKMNLAIRGIDN-DLGERNADTFHNDLHKGLKADYILANPPFNASDWGQER  286

Query  318  --EDPRWRFGVPPANNANYAWIQHILYKLAPGGRAGVVMAngsmssnsngegDIRAQIVE  375
              +D RW+FG+PP  NANYAWI+H++ KLAP G AG V+ANGSMS+++++E +IR +++E
Sbjct  287  LLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIE  346

Query  376  ADLVSCMVALPTQLFRSTGIPVCLWFFAKDKAAGKQGSIDRCGQVLFIDARELGDLVDRA  435
             DLV C+V+LP QLF ST IPVCLWF++++K  G++G  +R  ++LFIDARE+G++V R+
Sbjct  347  QDLVECIVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMVSRT  404

Query  436  ERALTNEEIVRIGDTFHAWRGSKSAAVKGIMYEDVPGFCKSATLAEIKATDYALTPGRYV  495
             + +++E+I ++++T+HAWRG++  +     YED++GFCK A L E+K  +Y LTPGRYV
Sbjct  405  LKEFSDEDIQKVAQTYHAWRGTNDKP-----YEDIAGFCKVANLEEVKNNEYILTPGRYV  459

Query  496  GTPAVEDDGEPIDEKMARLSKALLEAFDESARLERVVREQLGRL  539
            G + VE+D EP+++KM R++  L E F  S  LE  +R  L  L
Sbjct  460  GLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

249) hsdM in NC_017390


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  435 bits (1638),  Expect = 3e-123, Method: Compositional matrix adjust.
 Identities = 265/557 (48%), Positives = 389/557 (70%), Gaps = 64/557 (11%)

Query  12   LDSKFWKAADKLRANMDAANYKHVVLGLIFLKYVSDAFEARQQELTKLFRQVGNADNTYA  71
            ++ K+W+AADKLR++MDAA+YK+V LGLIFLKYVSD+FE + +EL               
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELK--------------  54

Query  72   IPREEYDSEAEYQQAIDQELEVEDYYAEKNVFWVPKAARWETLKSQAALPVGSVLGRDEN  131
              ++ Y  E +           +D Y   N+FWVPK ARW+ ++ +A  P          
Sbjct  55   --QDPYADEED-----------QDEYLAENIFWVPKEARWQYINDNAKKP----------  91

Query  132  GKELKLRSVSLLIDNALDKIEQSNGKLKGVLNR-IAHYQLGNEVLIGLINTFSDANFSNP  190
                    ++ +ID+A+  IE+ N  LKGVL +  A+  L++E L ++I+ F+       
Sbjct  92   -------EIGQIIDKAMIAIENENESLKGVLPKEYARPALDKEKLGDIIDLFT-------  137

Query  191  QYNGEQLKLSSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEMLQPYQGRVYD  250
             ++  +     +D+LG+VYEYF+++FA AEGK++G++YTP SIV L+VEM++PY+GR+YD
Sbjct  138  -FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYD  196

Query  251  PAMGSGGFFVSSDRFIEQHADAQRYNAAEQKQKIVVYGQESNPTTWRLAAMNMAIRGIDF  310
            P  GSGG FV S+RF+E+H +        + + I +YGQESNPTTW+LA MN+AIRGID 
Sbjct  197  PCCGSGGMFVQSERFVEKHQG--------RLDDIAIYGQESNPTTWKLAKMNLAIRGIDN  248

Query  311  DFGTKNADTLLDDQHPDLRADFVMANPPFNMKEWWSAKLENDVRWQYGTPPQGNANFAWM  370
            D+G +NADT+ +D H +L+AD+++ANPPFN  +W   +L +D RWQ+G PP+GNAN+AW+
Sbjct  249  DLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAWI  308

Query  371  QHMIHHLAPQGSMALLLANGSMSSNTNNEGEIRRKLVEADLVECMVALPGQLFTNTQIPA  430
            +HMI  LAP+G+ +++LANGSMS++ ++E EIR++L+E DLVEC+V+LPGQLF +TQIP 
Sbjct  309  EHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIPV  368

Query  431  CIWLLTKNKSGGNGKAHRKGEVLFIDARQTGFMKDRVLRDFTTEDIAKIAATFHAWQ--T  488
            C+W++++NK G NGK +R  E+LFIDAR+ G M  R L++F+ EDI K+A T+HAW+   
Sbjct  369  CLWFISNNK-GQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRGTN  427

Query  489  DKDYQDQAGFCFAASLADIQKNDFVLTPGRYVGAAEQEEDAEPFAEKMTRLTQQLKVQLA  548
            DK Y+D AGFC  A+L ++++N+++LTPGRYVG A+ EED EPF +KM R+T +L  Q+A
Sbjct  428  DKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQFA  487

Query  549  ESAELEKQIKANRGGVG  565
             S ELE QI+ +  G+G
Sbjct  488  KSKELEDQIRKSLEGLG  504

250) hsdM in NC_011852


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  435 bits (1637),  Expect = 4e-123, Method: Compositional matrix adjust.
 Identities = 257/540 (48%), Positives = 386/540 (72%), Gaps = 52/540 (9%)

Query  31   LDADLWKAADKLRQQLDAANYKHIVLGLIFLKYVSDSFSAQQEIIKQRYTDPTSDFYLDP  90
            ++  LW+AADKLR  +DAA+YK++ LGLIFLKYVSDSF        ++Y +      L  
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFE-------EKYEE------LKQ  55

Query  91   TAYSESELADILNAELEERDNYAQDNVFWVPQQARWDEIKVVARANIGDKIWDEKTFKGI  150
             +Y++ E          ++D+Y  +N+FWVP++ARW+ I+  A+               I
Sbjct  56   DPYADEE----------DQDEYLAENIFWVPKEARWQYINDNAKKP------------EI  93

Query  151  ANLIDDAFDAIEQDNPKLKNVIQR-ISPYKVDESILLGLIDLFSDTNFTRPTLDGKPISL  209
            +++ID A  AIE++N  LK V+ +  +   +D   L ++IDLF+   F     +++    
Sbjct  94   GQIIDKAMIAIENENESLKGVLPKEYARPALDKEKLGDIIDLFT---FKVGDTESRK---  147

Query  210  AAKDILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIIEMLEPYKGRIYDPAMGSGGFF  269
              +D+LG+VYEYF+++FA AEGK++G+++TP SIV L++EM+EPYKGRIYDP  GSGG F
Sbjct  148  --QDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMF  205

Query  270  VQTERFIREHQGNVSEVSIFGQEFNPTTWKLAAMNMAIRGIEFDFGKGNADTFSNPQHRD  329
            VQ+ERF+  HQG + +++I+GQE NPTTWKLA MN+AIRGI+ D+G  NADTF N  H++
Sbjct  206  VQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKG  265

Query  330  KKMDFVMANPPFNMKDWWNESLAQDPRWQYGIPPEGNANFAWLQHMIYHLSPNGRMALLL  389
             K D+++ANPPFN  DW +E L +D RWQ+GIPP GNAN+AW++HMI  L+PNG  +++L
Sbjct  266  LKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVL  325

Query  390  ANGSMSSNTNNEGEIRKNILKADLVEAMIALPSQLFTNTQIPACIWILNKNKARKG----  445
            ANGSMS++ ++E EIRKN++  DLVE +++LP+QLF +TQIP C+W++++NK+++G    
Sbjct  326  ANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKKER  385

Query  446  --EVLFIDARQLGYMKDRVLRDFTADDIAKVADTYHSWQQSAD--YQNIPAFCYTASLDE  501
              E+LFIDAR++G M  R L++F+ +DI KVA+TYH+W+ + D  Y++I++FC  A+L+E
Sbjct  386  ENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRGTNDKPYEDIAGFCKVANLEE  445

Query  502  IAQNDFVLTPGRYVGAAEQEDDGVPFAEKMQELTALLQQQFQQSAELEAKIKANLGGLGY  561
            + +N+++LTPGRYVG A+ E+D  PF +KM+ +T+ L +QF +S ELE +I+ +L GLGY
Sbjct  446  VKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGY  505

251) hsdM in NC_019952


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  434 bits (1633),  Expect = 6e-123, Method: Compositional matrix adjust.
 Identities = 254/524 (49%), Positives = 380/524 (73%), Gaps = 31/524 (5%)

Query  18   LKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYNerreairaelaaDGMDESQIE  77
            + + LW+AADKLRGS+ A++YK+V LGL+FLKYVSD+++E+          + + +    
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKY---------EELKQDPYA  59

Query  78   DLIDDPGEYQGYGVFVVPPSARWKFLAENAKGKPAVGGESAKNIGQLIDEAMDAVMKANP  137
            D  +D +EY +  +F VP  ARW+++ +NAK KP        +IGQ+ID AM A+ + N 
Sbjct  60   D-EEDQDEYLAENIFWVPKEARWQYINDNAK-KP--------EIGQIIDKAMIAIENENE  109

Query  138  TLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGAHRARDLMGEVYEYFLGNFARAEG  197
            +L G LP+ Y +  +D+ +LG++IDLF       +   R +D++G VYEYF+++FA AEG
Sbjct  110  SLKGVLPKEYARPALDKEKLGDIIDLFTFK--VGDTESRKQDVLGRVYEYFIAKFASAEG  167

Query  198  KRGGEFFTPPSVVKVIVEVLEPSSGRVYDPCCGSGGMFVQTEKFIYEHDGDPKNVVIYGQ  257
            K +GEF+TP+S+VK++VE++EP  GR+YDPCCGSGGMFVQ+E+F+  H+G   ++ IYGQ
Sbjct  168  KNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQ  227

Query  258  ESIEETWRMAKMNLAIHGIDNKGLGARWGDTFARDQHPDVRMDYVMANPPFNIKDWARNE  317
            ES   TW++AKMNLAI+GIDN +LG R +DTF  D H +++ DY++ANPPFN  DW+++ 
Sbjct  228  ESNPTTWKLAKMNLAIRGIDN-DLGERNADTFHNDLHKGLKADYILANPPFNASDWGQER  286

Query  318  --EDPRWRFGVPPANNANYAWIQHILYKLAPGGRAGVVMAngsmssnsngegDIRAQIVE  375
              +D RW+FG+PP  NANYAWI+H++ KLAP G AG V+ANGSMS+++++E +IR +++E
Sbjct  287  LLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIE  346

Query  376  ADVVSCMVALPTQLFRSTGIPVCLWFFAKDKAAGKQGSIDRCGQVLFIDGRELGYMVDRA  435
             D+V C+V+LP QLF ST IPVCLWF++++K  G++G  +R  ++LFID+RE+G MV R+
Sbjct  347  QDLVECIVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMVSRT  404

Query  436  ERALTNEEIVRIGDTFHAWRGSKSAAAKGITYEDVPGFCKSATLAEIKAADYALTPGRYV  495
             + +++E+I ++++T+HAWRG++  +     YED++GFCK A L E+K  +Y LTPGRYV
Sbjct  405  LKEFSDEDIQKVAQTYHAWRGTNDKP-----YEDIAGFCKVANLEEVKNNEYILTPGRYV  459

Query  496  GAPEVEDDGEPIDQKIARLTKELLAAFDESARLERVVREQLGRL  539
            G ++VE+D EP++QK+ R+T EL   F  S  LE  +R  L  L
Sbjct  460  GLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

252) PT7_2210 in NC_015458


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  433 bits (1630),  Expect = 1e-122, Method: Compositional matrix adjust.
 Identities = 270/517 (53%), Positives = 377/517 (73%), Gaps = 29/517 (5%)

Query  8    TLWAAADKLRANMDAAEYKHLVLGLIFVKYISDSFAAHRAALTKRFADQGDDYVLPDADE  67
             LW AADKLR++MDAAEYK++ LGLIF+KY+SDSF      L +      D Y       
Sbjct  12   KLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQ------DPY-------  58

Query  68   ALIASELEERDYYTAANIFWVPeaarwealraaaKQPDIGKRIDDALTAIEAENPKLKGI  127
                ++ E++D Y A NIFWVP  ARW+ +   AK+P+IG+ ID A+ AIE EN  LKG+
Sbjct  59   ----ADEEDQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGV  114

Query  128  LDKRYGRAQLPDGKLGELVDMISTIGFGGDANTARDILGQVYEYFLGQFASAEGKKGGQF  187
            L K Y+R+ L   KLG+++D++ T+  G+  +  +D+LG+VYEYF+++FASAEGK++G+F
Sbjct  115  LPKEYARPALDKEKLGDIIDLF-TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEF  173

Query  188  YTPASIVNTLVAVLAPHKGQVYDPCCGSGGMFVQSEKFIEAHGGNIGDVSIYGQESNPTT  247
            YTP+SIV+ LV ++ P KG++YDPCCGSGGMFVQSE+F+E H G ++D++IYGQESNPTT
Sbjct  174  YTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTT  233

Query  248  WRLAAMNLAIRGIDFNLGKEPADTFTRNQHPDLRADFILANPPFNISDWWHGSLEGDPRW  307
            W+LA MNLAIRGID +LG   ADTF  + H +L+AD+ILANPPFN SDW +  L +D RW
Sbjct  234  WKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRW  293

Query  308  QYGDPPKGNANYAWLQHMLHHLKPTGRAGIVLANGSMSSSQNNEGVIRaamvdadvvevm  367
            Q+G PPKGNANYAW++HM+  L P G AG+VLANGSMS+S ++E  IR  +++ D+VE +
Sbjct  294  QFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECI  353

Query  368  iaLPGQLFFNTQIPACLWFLAKQ------KKRKGEVLFIDARKMGRMISRVQAELDDAAI  421
            ++LPGQLF++TQIP CLWF++++      K R  E+LFIDAR +G+M+SR   E+ D  I
Sbjct  354  VTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDI  413

Query  422  TRIAETVAAWRGEVEDGATITEYQDVPGFCRSVPLAEIAQHGHVLTTGRYVGaeeveddd  481
             ++A+T  AWRG  +       Y+D++GFC+   L E+ ++  +LT GRYVG  +VE+D+
Sbjct  414  QKVAQTYHAWRGTNDKP-----YEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDE  468

Query  482  eafaeKMQKLTEKLGEQMAKGAELDAVIRQKLGGLGY  518
            E+F +KM+++T  L+EQ AK+ EL+  IR+ L GLGY
Sbjct  469  EPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGY  505

253) Plabr_4421 in NC_015174


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  433 bits (1629),  Expect = 1e-122, Method: Compositional matrix adjust.
 Identities = 264/551 (48%), Positives = 383/551 (70%), Gaps = 51/551 (9%)

Query  7    SDLSYADTLWKAADALRGQVDAAEYKHVVLGLLFLKYISDSFQSRRDELEAELTSDGIKG  66
            + +++ + LW+AAD LRG +DAAEYK+V LGL+FLKY+SDSF+ + +EL  +  +D    
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADE---  61

Query  67   EQLENLLESRDEYTAERVFWVPPESRWTNLQDQATRPDIATLIDDAILAVERDNPNLKSK  126
                   E +DEY AE +FWVP E+RW  ++D+A +P+I+ +ID A++A+E +N +LK+ 
Sbjct  62   -------EDQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGV  114

Query  127  LPRDYARRGIEPVKLKGLIDLIADIGFNGTREKARDTLGRVYEYFLGKFAAAEGKLGGEF  186
            LP++YAR +++  KL ++IDL++ +   +T  + +D LGRVYEYF++KFA+AEGK +GEF
Sbjct  115  LPKEYARPALDKEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEF  173

Query  187  YTPRSIVRVLVEMLEPYQGRIYDPACGSGGMFVQSEKFVEAHGGNRTDVSVFGQESNPTT  246
            YTP SIV++LVEM+EPY+GRIYDP CGSGGMFVQSE+FVE H G   D++++GQESNPTT
Sbjct  174  YTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTT  233

Query  247  WRLAHMNLAIHGIEANLGPQPADTFLKPQHPGLQADFVLANPPFNVSDYSGQLLRGDKRF  306
            W+LA MNLAI+GI+ +LG + ADTF +  H GL+AD++LANPPFN SD + + L +D R 
Sbjct  234  WKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRW  293

Query  307  SFGDPPVGNANYAWIQHFIHHLAFPNGQGGGVAGFVMANGSLSSNTGGEGDIRRKIVEAD  366
             FG PP GNANYAWI+H I  LA       G AGFV+ANGS+S++  +E +IR++++E D
Sbjct  294  QFGIPPKGNANYAWIEHMISKLA-----PNGTAGFVLANGSMSTSGKDELEIRKNLIEQD  348

Query  367  LVDCIVAMPAQLFFTTGIPVCLWFLTRDKTGKNIRKGTPNRPEGRQGETLFIDARKLGSM  426
            LV+CIV++P+QLF++T IPVCLWF++ +K G+N +K        R+ E LFIDAR +G M
Sbjct  349  LVECIVTLPGQLFYSTQIPVCLWFISNNK-GQNGKK-------ERENEILFIDAREIGHM  400

Query  427  QTRTLRVLSGLEEAEYVPGTSDPLPTSDIGRIVYAYRLWRGEPQPDWWNKKEYGEWTFMP  486
             +RTL+                 ++  DI ++  +Y+ WRG       N K Y +     
Sbjct  401  VSRTLK----------------EFSDEDIQKVAQTYHAWRGT------NDKPYED-----  433

Query  487  TPGFASPATIEQIAKHGYALTPGRYVGAEVIEEDDEPFAEKYPRLVAeveeslregerls  546
             +GF   A +E++ ++ Y LTPGRYVG   +EED+EPF +K  R+ +E+ E +  +  L 
Sbjct  434  IAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQFAKSKELE  493

Query  547  svIRQTLRGVG  557
              IR++L G+G
Sbjct  494  DQIRKSLEGLG  504

254) hsdM in NC_017524


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  432 bits (1625),  Expect = 3e-122, Method: Compositional matrix adjust.
 Identities = 254/524 (49%), Positives = 381/524 (73%), Gaps = 31/524 (5%)

Query  18   LKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDerreairaelaaeGMEESQIE  77
            + + LW+AADKLRGS+ A++YK+V LGL+FLKYVSD+++E+ E          + +    
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYE---------ELKQDPYA  59

Query  78   DLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAVMKANP  137
            D  +D ++Y +  +F VP  ARW+++ +N+K KP        +IGQ+ID AM A+ + N 
Sbjct  60   D-EEDQDEYLAENIFWVPKEARWQYINDNAK-KP--------EIGQIIDKAMIAIENENE  109

Query  138  TLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLGNFARAEG  197
            +L G LP+ Y +  +D+ +LG++IDLF       + E R +D++G VYEYF+++FA AEG
Sbjct  110  SLKGVLPKEYARPALDKEKLGDIIDLFTFK--VGDTESRKQDVLGRVYEYFIAKFASAEG  167

Query  198  KRGGEFFTPPSVVKVIVEVLEPSSGRVYDPCCGSGGMFVQTEKFIYEHDGDPKDVSIYGQ  257
            K +GEF+TP+S+VK++VE++EP  GR+YDPCCGSGGMFVQ+E+F+  H+G   D++IYGQ
Sbjct  168  KNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQ  227

Query  258  ESIEETWRMAKMNLAIHGIDNKGLGARWSDTFARDQHPDVQMDYVMANLPFNIKDWARNE  317
            ES   TW++AKMNLAI+GIDN +LG R +DTF  D H +++ DY++AN PFN  DW+++ 
Sbjct  228  ESNPTTWKLAKMNLAIRGIDN-DLGERNADTFHNDLHKGLKADYILANPPFNASDWGQER  286

Query  318  --EDPRWRFGVPPANNANYAWIQHILYKLAPGGRAGVVMAngsmssnsngegDIRAQIVE  375
              +D RW+FG+PP  NANYAWI+H++ KLAP G AG V+ANGSMS+++++E +IR +++E
Sbjct  287  LLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIE  346

Query  376  ADLVSCMVALPTQLFRSTGIPVCLWFFAKDKAAGKQGSIDRCGQVLFIDARELGDLVDRA  435
             DLV C+V+LP QLF ST IPVCLWF++++K  G++G  +R  ++LFIDARE+G++V R+
Sbjct  347  QDLVECIVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMVSRT  404

Query  436  ERALTNEEIVRIGDTFHAWRGSKSAAVKGIMYEDVPGFCKSATLAEIKATDYALTPGRYV  495
             + +++E+I ++++T+HAWRG++  +     YED++GFCK A L E+K  +Y LTPGRYV
Sbjct  405  LKEFSDEDIQKVAQTYHAWRGTNDKP-----YEDIAGFCKVANLEEVKNNEYILTPGRYV  459

Query  496  GTPAVEDDGEPIDEKMARLSKALLEAFDESARLERVVREQLGRL  539
            G + VE+D EP+++KM R++  L E F  S  LE  +R  L  L
Sbjct  460  GLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

255) TBFG_12769 in NC_009565


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  432 bits (1625),  Expect = 3e-122, Method: Compositional matrix adjust.
 Identities = 254/524 (49%), Positives = 381/524 (73%), Gaps = 31/524 (5%)

Query  18   LKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDerreairaelaaeGMEESQIE  77
            + + LW+AADKLRGS+ A++YK+V LGL+FLKYVSD+++E+ E          + +    
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYE---------ELKQDPYA  59

Query  78   DLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAVMKANP  137
            D  +D ++Y +  +F VP  ARW+++ +N+K KP        +IGQ+ID AM A+ + N 
Sbjct  60   D-EEDQDEYLAENIFWVPKEARWQYINDNAK-KP--------EIGQIIDKAMIAIENENE  109

Query  138  TLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLGNFARAEG  197
            +L G LP+ Y +  +D+ +LG++IDLF       + E R +D++G VYEYF+++FA AEG
Sbjct  110  SLKGVLPKEYARPALDKEKLGDIIDLFTFK--VGDTESRKQDVLGRVYEYFIAKFASAEG  167

Query  198  KRGGEFFTPPSVVKVIVEVLEPSSGRVYDPCCGSGGMFVQTEKFIYEHDGDPKDVSIYGQ  257
            K +GEF+TP+S+VK++VE++EP  GR+YDPCCGSGGMFVQ+E+F+  H+G   D++IYGQ
Sbjct  168  KNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQ  227

Query  258  ESIEETWRMAKMNLAIHGIDNKGLGARWSDTFARDQHPDVQMDYVMANLPFNIKDWARNE  317
            ES   TW++AKMNLAI+GIDN +LG R +DTF  D H +++ DY++AN PFN  DW+++ 
Sbjct  228  ESNPTTWKLAKMNLAIRGIDN-DLGERNADTFHNDLHKGLKADYILANPPFNASDWGQER  286

Query  318  --EDPRWRFGVPPANNANYAWIQHILYKLAPGGRAGVVMAngsmssnsngegDIRAQIVE  375
              +D RW+FG+PP  NANYAWI+H++ KLAP G AG V+ANGSMS+++++E +IR +++E
Sbjct  287  LLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIE  346

Query  376  ADLVSCMVALPTQLFRSTGIPVCLWFFAKDKAAGKQGSIDRCGQVLFIDARELGDLVDRA  435
             DLV C+V+LP QLF ST IPVCLWF++++K  G++G  +R  ++LFIDARE+G++V R+
Sbjct  347  QDLVECIVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMVSRT  404

Query  436  ERALTNEEIVRIGDTFHAWRGSKSAAVKGIMYEDVPGFCKSATLAEIKATDYALTPGRYV  495
             + +++E+I ++++T+HAWRG++  +     YED++GFCK A L E+K  +Y LTPGRYV
Sbjct  405  LKEFSDEDIQKVAQTYHAWRGTNDKP-----YEDIAGFCKVANLEEVKNNEYILTPGRYV  459

Query  496  GTPAVEDDGEPIDEKMARLSKALLEAFDESARLERVVREQLGRL  539
            G + VE+D EP+++KM R++  L E F  S  LE  +R  L  L
Sbjct  460  GLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

256) hsdM in NC_009525


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  432 bits (1625),  Expect = 3e-122, Method: Compositional matrix adjust.
 Identities = 254/524 (49%), Positives = 381/524 (73%), Gaps = 31/524 (5%)

Query  18   LKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDerreairaelaaeGMEESQIE  77
            + + LW+AADKLRGS+ A++YK+V LGL+FLKYVSD+++E+ E          + +    
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYE---------ELKQDPYA  59

Query  78   DLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAVMKANP  137
            D  +D ++Y +  +F VP  ARW+++ +N+K KP        +IGQ+ID AM A+ + N 
Sbjct  60   D-EEDQDEYLAENIFWVPKEARWQYINDNAK-KP--------EIGQIIDKAMIAIENENE  109

Query  138  TLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLGNFARAEG  197
            +L G LP+ Y +  +D+ +LG++IDLF       + E R +D++G VYEYF+++FA AEG
Sbjct  110  SLKGVLPKEYARPALDKEKLGDIIDLFTFK--VGDTESRKQDVLGRVYEYFIAKFASAEG  167

Query  198  KRGGEFFTPPSVVKVIVEVLEPSSGRVYDPCCGSGGMFVQTEKFIYEHDGDPKDVSIYGQ  257
            K +GEF+TP+S+VK++VE++EP  GR+YDPCCGSGGMFVQ+E+F+  H+G   D++IYGQ
Sbjct  168  KNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQ  227

Query  258  ESIEETWRMAKMNLAIHGIDNKGLGARWSDTFARDQHPDVQMDYVMANLPFNIKDWARNE  317
            ES   TW++AKMNLAI+GIDN +LG R +DTF  D H +++ DY++AN PFN  DW+++ 
Sbjct  228  ESNPTTWKLAKMNLAIRGIDN-DLGERNADTFHNDLHKGLKADYILANPPFNASDWGQER  286

Query  318  --EDPRWRFGVPPANNANYAWIQHILYKLAPGGRAGVVMAngsmssnsngegDIRAQIVE  375
              +D RW+FG+PP  NANYAWI+H++ KLAP G AG V+ANGSMS+++++E +IR +++E
Sbjct  287  LLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIE  346

Query  376  ADLVSCMVALPTQLFRSTGIPVCLWFFAKDKAAGKQGSIDRCGQVLFIDARELGDLVDRA  435
             DLV C+V+LP QLF ST IPVCLWF++++K  G++G  +R  ++LFIDARE+G++V R+
Sbjct  347  QDLVECIVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMVSRT  404

Query  436  ERALTNEEIVRIGDTFHAWRGSKSAAVKGIMYEDVPGFCKSATLAEIKATDYALTPGRYV  495
             + +++E+I ++++T+HAWRG++  +     YED++GFCK A L E+K  +Y LTPGRYV
Sbjct  405  LKEFSDEDIQKVAQTYHAWRGTNDKP-----YEDIAGFCKVANLEEVKNNEYILTPGRYV  459

Query  496  GTPAVEDDGEPIDEKMARLSKALLEAFDESARLERVVREQLGRL  539
            G + VE+D EP+++KM R++  L E F  S  LE  +R  L  L
Sbjct  460  GLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

257) RVBD_2756c in NC_018143


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  432 bits (1625),  Expect = 3e-122, Method: Compositional matrix adjust.
 Identities = 254/524 (49%), Positives = 381/524 (73%), Gaps = 31/524 (5%)

Query  18   LKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDerreairaelaaeGMEESQIE  77
            + + LW+AADKLRGS+ A++YK+V LGL+FLKYVSD+++E+ E          + +    
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYE---------ELKQDPYA  59

Query  78   DLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAVMKANP  137
            D  +D ++Y +  +F VP  ARW+++ +N+K KP        +IGQ+ID AM A+ + N 
Sbjct  60   D-EEDQDEYLAENIFWVPKEARWQYINDNAK-KP--------EIGQIIDKAMIAIENENE  109

Query  138  TLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLGNFARAEG  197
            +L G LP+ Y +  +D+ +LG++IDLF       + E R +D++G VYEYF+++FA AEG
Sbjct  110  SLKGVLPKEYARPALDKEKLGDIIDLFTFK--VGDTESRKQDVLGRVYEYFIAKFASAEG  167

Query  198  KRGGEFFTPPSVVKVIVEVLEPSSGRVYDPCCGSGGMFVQTEKFIYEHDGDPKDVSIYGQ  257
            K +GEF+TP+S+VK++VE++EP  GR+YDPCCGSGGMFVQ+E+F+  H+G   D++IYGQ
Sbjct  168  KNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQ  227

Query  258  ESIEETWRMAKMNLAIHGIDNKGLGARWSDTFARDQHPDVQMDYVMANLPFNIKDWARNE  317
            ES   TW++AKMNLAI+GIDN +LG R +DTF  D H +++ DY++AN PFN  DW+++ 
Sbjct  228  ESNPTTWKLAKMNLAIRGIDN-DLGERNADTFHNDLHKGLKADYILANPPFNASDWGQER  286

Query  318  --EDPRWRFGVPPANNANYAWIQHILYKLAPGGRAGVVMAngsmssnsngegDIRAQIVE  375
              +D RW+FG+PP  NANYAWI+H++ KLAP G AG V+ANGSMS+++++E +IR +++E
Sbjct  287  LLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIE  346

Query  376  ADLVSCMVALPTQLFRSTGIPVCLWFFAKDKAAGKQGSIDRCGQVLFIDARELGDLVDRA  435
             DLV C+V+LP QLF ST IPVCLWF++++K  G++G  +R  ++LFIDARE+G++V R+
Sbjct  347  QDLVECIVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMVSRT  404

Query  436  ERALTNEEIVRIGDTFHAWRGSKSAAVKGIMYEDVPGFCKSATLAEIKATDYALTPGRYV  495
             + +++E+I ++++T+HAWRG++  +     YED++GFCK A L E+K  +Y LTPGRYV
Sbjct  405  LKEFSDEDIQKVAQTYHAWRGTNDKP-----YEDIAGFCKVANLEEVKNNEYILTPGRYV  459

Query  496  GTPAVEDDGEPIDEKMARLSKALLEAFDESARLERVVREQLGRL  539
            G + VE+D EP+++KM R++  L E F  S  LE  +R  L  L
Sbjct  460  GLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

258) hsdM in NC_000962


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  432 bits (1625),  Expect = 3e-122, Method: Compositional matrix adjust.
 Identities = 254/524 (49%), Positives = 381/524 (73%), Gaps = 31/524 (5%)

Query  18   LKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDerreairaelaaeGMEESQIE  77
            + + LW+AADKLRGS+ A++YK+V LGL+FLKYVSD+++E+ E          + +    
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYE---------ELKQDPYA  59

Query  78   DLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAVMKANP  137
            D  +D ++Y +  +F VP  ARW+++ +N+K KP        +IGQ+ID AM A+ + N 
Sbjct  60   D-EEDQDEYLAENIFWVPKEARWQYINDNAK-KP--------EIGQIIDKAMIAIENENE  109

Query  138  TLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLGNFARAEG  197
            +L G LP+ Y +  +D+ +LG++IDLF       + E R +D++G VYEYF+++FA AEG
Sbjct  110  SLKGVLPKEYARPALDKEKLGDIIDLFTFK--VGDTESRKQDVLGRVYEYFIAKFASAEG  167

Query  198  KRGGEFFTPPSVVKVIVEVLEPSSGRVYDPCCGSGGMFVQTEKFIYEHDGDPKDVSIYGQ  257
            K +GEF+TP+S+VK++VE++EP  GR+YDPCCGSGGMFVQ+E+F+  H+G   D++IYGQ
Sbjct  168  KNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQ  227

Query  258  ESIEETWRMAKMNLAIHGIDNKGLGARWSDTFARDQHPDVQMDYVMANLPFNIKDWARNE  317
            ES   TW++AKMNLAI+GIDN +LG R +DTF  D H +++ DY++AN PFN  DW+++ 
Sbjct  228  ESNPTTWKLAKMNLAIRGIDN-DLGERNADTFHNDLHKGLKADYILANPPFNASDWGQER  286

Query  318  --EDPRWRFGVPPANNANYAWIQHILYKLAPGGRAGVVMAngsmssnsngegDIRAQIVE  375
              +D RW+FG+PP  NANYAWI+H++ KLAP G AG V+ANGSMS+++++E +IR +++E
Sbjct  287  LLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIE  346

Query  376  ADLVSCMVALPTQLFRSTGIPVCLWFFAKDKAAGKQGSIDRCGQVLFIDARELGDLVDRA  435
             DLV C+V+LP QLF ST IPVCLWF++++K  G++G  +R  ++LFIDARE+G++V R+
Sbjct  347  QDLVECIVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMVSRT  404

Query  436  ERALTNEEIVRIGDTFHAWRGSKSAAVKGIMYEDVPGFCKSATLAEIKATDYALTPGRYV  495
             + +++E+I ++++T+HAWRG++  +     YED++GFCK A L E+K  +Y LTPGRYV
Sbjct  405  LKEFSDEDIQKVAQTYHAWRGTNDKP-----YEDIAGFCKVANLEEVKNNEYILTPGRYV  459

Query  496  GTPAVEDDGEPIDEKMARLSKALLEAFDESARLERVVREQLGRL  539
            G + VE+D EP+++KM R++  L E F  S  LE  +R  L  L
Sbjct  460  GLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

259) TBMG_01219 in NC_012943


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  432 bits (1625),  Expect = 3e-122, Method: Compositional matrix adjust.
 Identities = 254/524 (49%), Positives = 381/524 (73%), Gaps = 31/524 (5%)

Query  18   LKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDerreairaelaaeGMEESQIE  77
            + + LW+AADKLRGS+ A++YK+V LGL+FLKYVSD+++E+ E          + +    
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYE---------ELKQDPYA  59

Query  78   DLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAVMKANP  137
            D  +D ++Y +  +F VP  ARW+++ +N+K KP        +IGQ+ID AM A+ + N 
Sbjct  60   D-EEDQDEYLAENIFWVPKEARWQYINDNAK-KP--------EIGQIIDKAMIAIENENE  109

Query  138  TLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLGNFARAEG  197
            +L G LP+ Y +  +D+ +LG++IDLF       + E R +D++G VYEYF+++FA AEG
Sbjct  110  SLKGVLPKEYARPALDKEKLGDIIDLFTFK--VGDTESRKQDVLGRVYEYFIAKFASAEG  167

Query  198  KRGGEFFTPPSVVKVIVEVLEPSSGRVYDPCCGSGGMFVQTEKFIYEHDGDPKDVSIYGQ  257
            K +GEF+TP+S+VK++VE++EP  GR+YDPCCGSGGMFVQ+E+F+  H+G   D++IYGQ
Sbjct  168  KNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQ  227

Query  258  ESIEETWRMAKMNLAIHGIDNKGLGARWSDTFARDQHPDVQMDYVMANLPFNIKDWARNE  317
            ES   TW++AKMNLAI+GIDN +LG R +DTF  D H +++ DY++AN PFN  DW+++ 
Sbjct  228  ESNPTTWKLAKMNLAIRGIDN-DLGERNADTFHNDLHKGLKADYILANPPFNASDWGQER  286

Query  318  --EDPRWRFGVPPANNANYAWIQHILYKLAPGGRAGVVMAngsmssnsngegDIRAQIVE  375
              +D RW+FG+PP  NANYAWI+H++ KLAP G AG V+ANGSMS+++++E +IR +++E
Sbjct  287  LLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIE  346

Query  376  ADLVSCMVALPTQLFRSTGIPVCLWFFAKDKAAGKQGSIDRCGQVLFIDARELGDLVDRA  435
             DLV C+V+LP QLF ST IPVCLWF++++K  G++G  +R  ++LFIDARE+G++V R+
Sbjct  347  QDLVECIVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMVSRT  404

Query  436  ERALTNEEIVRIGDTFHAWRGSKSAAVKGIMYEDVPGFCKSATLAEIKATDYALTPGRYV  495
             + +++E+I ++++T+HAWRG++  +     YED++GFCK A L E+K  +Y LTPGRYV
Sbjct  405  LKEFSDEDIQKVAQTYHAWRGTNDKP-----YEDIAGFCKVANLEEVKNNEYILTPGRYV  459

Query  496  GTPAVEDDGEPIDEKMARLSKALLEAFDESARLERVVREQLGRL  539
            G + VE+D EP+++KM R++  L E F  S  LE  +R  L  L
Sbjct  460  GLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

260) TBSG_01229 in NC_016768


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  432 bits (1625),  Expect = 3e-122, Method: Compositional matrix adjust.
 Identities = 254/524 (49%), Positives = 381/524 (73%), Gaps = 31/524 (5%)

Query  18   LKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDerreairaelaaeGMEESQIE  77
            + + LW+AADKLRGS+ A++YK+V LGL+FLKYVSD+++E+ E          + +    
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYE---------ELKQDPYA  59

Query  78   DLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAVMKANP  137
            D  +D ++Y +  +F VP  ARW+++ +N+K KP        +IGQ+ID AM A+ + N 
Sbjct  60   D-EEDQDEYLAENIFWVPKEARWQYINDNAK-KP--------EIGQIIDKAMIAIENENE  109

Query  138  TLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLGNFARAEG  197
            +L G LP+ Y +  +D+ +LG++IDLF       + E R +D++G VYEYF+++FA AEG
Sbjct  110  SLKGVLPKEYARPALDKEKLGDIIDLFTFK--VGDTESRKQDVLGRVYEYFIAKFASAEG  167

Query  198  KRGGEFFTPPSVVKVIVEVLEPSSGRVYDPCCGSGGMFVQTEKFIYEHDGDPKDVSIYGQ  257
            K +GEF+TP+S+VK++VE++EP  GR+YDPCCGSGGMFVQ+E+F+  H+G   D++IYGQ
Sbjct  168  KNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQ  227

Query  258  ESIEETWRMAKMNLAIHGIDNKGLGARWSDTFARDQHPDVQMDYVMANLPFNIKDWARNE  317
            ES   TW++AKMNLAI+GIDN +LG R +DTF  D H +++ DY++AN PFN  DW+++ 
Sbjct  228  ESNPTTWKLAKMNLAIRGIDN-DLGERNADTFHNDLHKGLKADYILANPPFNASDWGQER  286

Query  318  --EDPRWRFGVPPANNANYAWIQHILYKLAPGGRAGVVMAngsmssnsngegDIRAQIVE  375
              +D RW+FG+PP  NANYAWI+H++ KLAP G AG V+ANGSMS+++++E +IR +++E
Sbjct  287  LLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIE  346

Query  376  ADLVSCMVALPTQLFRSTGIPVCLWFFAKDKAAGKQGSIDRCGQVLFIDARELGDLVDRA  435
             DLV C+V+LP QLF ST IPVCLWF++++K  G++G  +R  ++LFIDARE+G++V R+
Sbjct  347  QDLVECIVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMVSRT  404

Query  436  ERALTNEEIVRIGDTFHAWRGSKSAAVKGIMYEDVPGFCKSATLAEIKATDYALTPGRYV  495
             + +++E+I ++++T+HAWRG++  +     YED++GFCK A L E+K  +Y LTPGRYV
Sbjct  405  LKEFSDEDIQKVAQTYHAWRGTNDKP-----YEDIAGFCKVANLEEVKNNEYILTPGRYV  459

Query  496  GTPAVEDDGEPIDEKMARLSKALLEAFDESARLERVVREQLGRL  539
            G + VE+D EP+++KM R++  L E F  S  LE  +R  L  L
Sbjct  460  GLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

261) TBXG_001209 in NC_018078


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  432 bits (1625),  Expect = 3e-122, Method: Compositional matrix adjust.
 Identities = 254/524 (49%), Positives = 381/524 (73%), Gaps = 31/524 (5%)

Query  18   LKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDerreairaelaaeGMEESQIE  77
            + + LW+AADKLRGS+ A++YK+V LGL+FLKYVSD+++E+ E          + +    
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYE---------ELKQDPYA  59

Query  78   DLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAVMKANP  137
            D  +D ++Y +  +F VP  ARW+++ +N+K KP        +IGQ+ID AM A+ + N 
Sbjct  60   D-EEDQDEYLAENIFWVPKEARWQYINDNAK-KP--------EIGQIIDKAMIAIENENE  109

Query  138  TLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLGNFARAEG  197
            +L G LP+ Y +  +D+ +LG++IDLF       + E R +D++G VYEYF+++FA AEG
Sbjct  110  SLKGVLPKEYARPALDKEKLGDIIDLFTFK--VGDTESRKQDVLGRVYEYFIAKFASAEG  167

Query  198  KRGGEFFTPPSVVKVIVEVLEPSSGRVYDPCCGSGGMFVQTEKFIYEHDGDPKDVSIYGQ  257
            K +GEF+TP+S+VK++VE++EP  GR+YDPCCGSGGMFVQ+E+F+  H+G   D++IYGQ
Sbjct  168  KNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQ  227

Query  258  ESIEETWRMAKMNLAIHGIDNKGLGARWSDTFARDQHPDVQMDYVMANLPFNIKDWARNE  317
            ES   TW++AKMNLAI+GIDN +LG R +DTF  D H +++ DY++AN PFN  DW+++ 
Sbjct  228  ESNPTTWKLAKMNLAIRGIDN-DLGERNADTFHNDLHKGLKADYILANPPFNASDWGQER  286

Query  318  --EDPRWRFGVPPANNANYAWIQHILYKLAPGGRAGVVMAngsmssnsngegDIRAQIVE  375
              +D RW+FG+PP  NANYAWI+H++ KLAP G AG V+ANGSMS+++++E +IR +++E
Sbjct  287  LLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIE  346

Query  376  ADLVSCMVALPTQLFRSTGIPVCLWFFAKDKAAGKQGSIDRCGQVLFIDARELGDLVDRA  435
             DLV C+V+LP QLF ST IPVCLWF++++K  G++G  +R  ++LFIDARE+G++V R+
Sbjct  347  QDLVECIVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMVSRT  404

Query  436  ERALTNEEIVRIGDTFHAWRGSKSAAVKGIMYEDVPGFCKSATLAEIKATDYALTPGRYV  495
             + +++E+I ++++T+HAWRG++  +     YED++GFCK A L E+K  +Y LTPGRYV
Sbjct  405  LKEFSDEDIQKVAQTYHAWRGTNDKP-----YEDIAGFCKVANLEEVKNNEYILTPGRYV  459

Query  496  GTPAVEDDGEPIDEKMARLSKALLEAFDESARLERVVREQLGRL  539
            G + VE+D EP+++KM R++  L E F  S  LE  +R  L  L
Sbjct  460  GLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

262) hsdM in NC_016934


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  432 bits (1625),  Expect = 3e-122, Method: Compositional matrix adjust.
 Identities = 254/524 (49%), Positives = 381/524 (73%), Gaps = 31/524 (5%)

Query  18   LKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDerreairaelaaeGMEESQIE  77
            + + LW+AADKLRGS+ A++YK+V LGL+FLKYVSD+++E+ E          + +    
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYE---------ELKQDPYA  59

Query  78   DLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAVMKANP  137
            D  +D ++Y +  +F VP  ARW+++ +N+K KP        +IGQ+ID AM A+ + N 
Sbjct  60   D-EEDQDEYLAENIFWVPKEARWQYINDNAK-KP--------EIGQIIDKAMIAIENENE  109

Query  138  TLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLGNFARAEG  197
            +L G LP+ Y +  +D+ +LG++IDLF       + E R +D++G VYEYF+++FA AEG
Sbjct  110  SLKGVLPKEYARPALDKEKLGDIIDLFTFK--VGDTESRKQDVLGRVYEYFIAKFASAEG  167

Query  198  KRGGEFFTPPSVVKVIVEVLEPSSGRVYDPCCGSGGMFVQTEKFIYEHDGDPKDVSIYGQ  257
            K +GEF+TP+S+VK++VE++EP  GR+YDPCCGSGGMFVQ+E+F+  H+G   D++IYGQ
Sbjct  168  KNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQ  227

Query  258  ESIEETWRMAKMNLAIHGIDNKGLGARWSDTFARDQHPDVQMDYVMANLPFNIKDWARNE  317
            ES   TW++AKMNLAI+GIDN +LG R +DTF  D H +++ DY++AN PFN  DW+++ 
Sbjct  228  ESNPTTWKLAKMNLAIRGIDN-DLGERNADTFHNDLHKGLKADYILANPPFNASDWGQER  286

Query  318  --EDPRWRFGVPPANNANYAWIQHILYKLAPGGRAGVVMAngsmssnsngegDIRAQIVE  375
              +D RW+FG+PP  NANYAWI+H++ KLAP G AG V+ANGSMS+++++E +IR +++E
Sbjct  287  LLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIE  346

Query  376  ADLVSCMVALPTQLFRSTGIPVCLWFFAKDKAAGKQGSIDRCGQVLFIDARELGDLVDRA  435
             DLV C+V+LP QLF ST IPVCLWF++++K  G++G  +R  ++LFIDARE+G++V R+
Sbjct  347  QDLVECIVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMVSRT  404

Query  436  ERALTNEEIVRIGDTFHAWRGSKSAAVKGIMYEDVPGFCKSATLAEIKATDYALTPGRYV  495
             + +++E+I ++++T+HAWRG++  +     YED++GFCK A L E+K  +Y LTPGRYV
Sbjct  405  LKEFSDEDIQKVAQTYHAWRGTNDKP-----YEDIAGFCKVANLEEVKNNEYILTPGRYV  459

Query  496  GTPAVEDDGEPIDEKMARLSKALLEAFDESARLERVVREQLGRL  539
            G + VE+D EP+++KM R++  L E F  S  LE  +R  L  L
Sbjct  460  GLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

263) VFMJ11_B0053 in NC_011185


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  430 bits (1620),  Expect = 6e-122, Method: Compositional matrix adjust.
 Identities = 253/513 (50%), Positives = 376/513 (74%), Gaps = 19/513 (3%)

Query  9    AFFDTLWDSAVALRGALQPSEYKHPVLGLLFIKYVSDSFTELQVNLKEWVADANHDYYGM  68
            +F + LW++A  LRG+++++EYK+  LGL+F+KYVSDSF E   +LK       +D Y+ 
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELK-------QDPYA-  59

Query  69   DINDPDLYEAENVFWVPEEARWDFLVGSAKQTNIAKLLDEAVKAIEDNNSQLKGMLYRGF  128
            D +D D Y AEN+FWVP EARW+++ ++AK+ +I++++D A+ AIE++N  LKG+L + +
Sbjct  60   DEEDQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEY  119

Query  129  GLLKIPSSKLGELIDLLGKLTFNSKEHRSADVLGQAYEFFLGKFALAEGASAGAFYTPES  188
            +   +   KLG++IDL+  +     E R  DVLG+ YE+F++KFA AEG +AG FYTP S
Sbjct  120  ARPALDKEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSS  178

Query  189  IVSTIVEVIAPTKGQLYEPAIGSGGMVVCSEKFMERNGGERGDISVYGQEYTHTTWKMAA  248
            IV  +VE+I P KG++Y+P  GSGGM V SE+F+E++ G  +DI++YGQE   TTWK+A 
Sbjct  179  IVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAK  238

Query  249  MNLTIRGLDFDLGKENADTLLNDLHKDLRADYIMANPPFNQEKWGAAKVAGDVRWKWGQP  308
            MNL+IRG+D DLG  NADT+ NDLHK+L+ADYI+ANPPFN   WG  ++ +D RW+ G P
Sbjct  239  MNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIP  298

Query  309  SDSNANYAWIQHMLYHLNETGRAGVVMANGAMTSTANNEDAIRKAIIEDDLVECMVALPP  368
            + +NANYAWI+HM+  L   G AG V+ANG+M++++++E  IRK +IE+DLVEC+V+LP 
Sbjct  299  PKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPG  358

Query  369  KLFINTQIPSCIFFFNKN------KKRKGETLFIDARHLGRLESRAQLVFDEEHIMEIAN  422
            +LF +TQIP C+ F+++N      K R  E LFIDAR++G++ SR+   F +E+I  +A+
Sbjct  359  QLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQ  418

Query  423  TYHAWAKTDFAEKDSKYVDIAGFCKSGKLEDIEKAGFVLSPGRYVGAAEVEEDEASYQED  482
            TYHAW  T+    D  Y DIAGFCK ++LE++ +  ++L+PGRYVG A+VEEDE ++++ 
Sbjct  419  TYHAWRGTN----DKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQK  474

Query  483  MATLTGQLSEQIKKSVSLDEQIKASLAEVGYDI  515
            M  +T++LSEQ+ KS  L++QI+ SL  +GY++
Sbjct  475  MERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

264) Desal_2735 in NC_012881


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  429 bits (1617),  Expect = 1e-121, Method: Compositional matrix adjust.
 Identities = 256/538 (48%), Positives = 383/538 (72%), Gaps = 42/538 (7%)

Query  12   DLDKRLWDAACKLLPSLDAAVYKHVVLGLVFLKYVGDSFEQRKYELLKN--FTNP-DHEY  68
            +++ +LW+AA KL  S+DAA YK+V LGL+FLKYV+DSFE+ KYE LK+  +++  D++ 
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEE-KYEELKQDPYADEEDQDE  66

Query  69   FLeddedpmeeieerdyyveeNVFWVPESGRWVNLMDCAKLNPGEPLPWGDKTFKSVGAL  128
            +L +                 N+FWVP  +RW  + D AK +P             +G +
Sbjct  67   YLAE-----------------NIFWVPKEARWQYINDNAK-KP------------EIGQI  96

Query  129  IDDAMTAVEKENPVLKNVLNKDYARLEVPDGKLSEVMDLINSIPFEHESLKSKDILGHVY  188
            ID AM A+E+EN  LK VL K+YAR  +   KL++++DL+ ++   +   + +D+LG+VY
Sbjct  97   IDKAMIAIENENESLKGVLPKEYARPALDKEKLGDIIDLF-TFKVGDTESRKQDVLGRVY  155

Query  189  EYFLgefaaaegkkggQYYTPKSIVNLITEMLRPYKGRIYDPACGSGGFFVSSEEFVETH  248
            EYF++ FA+AEGK++G++YTP SIV+L+ EM+ PYKGRIYDP CGSGG FV SE FVE H
Sbjct  156  EYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKH  215

Query  249  THRPADLAIYGQESNPTTWRLAAMNMAIRGIEYDFGKEPADTFTNDQHGTMRFDYIMANP  308
              R  D+AIYGQESNPTTW+LA MN+AIRGI+ D+G   ADTF ND H  ++ DYI+ANP
Sbjct  216  QGRLDDIAIYGQESNPTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANP  275

Query  309  PFNLKGWGADSLANDVRWKYGLPPDNNANFAWMQHMIHHLSPKGKMGLLLANGSMSSATS  368
            PFN  +WG + L +D RW++G+PP  NAN+AW++HMI  L+P+G  G++LANGSMS++  
Sbjct  276  PFNASDWGQERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGK  335

Query  369  GEGDIRRKIIEDDLVECIVALPGQLFTNTQIPACIWFLNKDKSNGQNIEDLRNRTGEVLF  428
            +E +IR+++IE+DLVECIV+LPGQLF +TQIP C+WF++++K++  +    ++R  E+LF
Sbjct  336  DELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGK----KERENEILF  391

Query  429  IDARNCGYMLDRVLRDFHPEKDIQRIAHTLLSWQVGEKSAVKYEDVPGFCAAVTLDDIRK  488
            IDAR+ G M+ R L++F ++ DIQ++A+T  +W+  +  +  YED++GFC    L+++++
Sbjct  392  IDAREIGHMVSRTLKEF-SDEDIQKVAQTYHAWRGTNDKP--YEDIAGFCKVANLEEVKN  448

Query  489  HDYVLTPGRYVGAEEIEDNGPPFEEKMGELSTSLYEQMREGERLDKLIRENLAILGFG  546
            ++Y+LTPGRYVG  ++E++  PFE+KM  +++ L EQ   +  L+  IR +L  LG+G
Sbjct  449  NEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYG  506

265) NT08PM_1864 in NC_017764


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  426 bits (1602),  Expect = 2e-120, Method: Compositional matrix adjust.
 Identities = 249/559 (45%), Positives = 394/559 (71%), Gaps = 65/559 (11%)

Query  12   LDAKLWKSADKLRSSMDAANYKHVILSLIFLKYVSDAFLSRQQSIQQQLTDPEHLYYLDP  71
            ++ KLW++ADKLR+SMDAA+YK+V L+LIFLKYVSD+F  + + ++Q   DP        
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQ---DP--------  57

Query  72   SFYDSEEEYQQALANELEELDYYTEENVFWVPKTARWDVLKTKATTPVGAVLWQDEKGED  131
              Y  EE+ ++           Y  EN+FWVPK ARW+ ++                 ++
Sbjct  58   --YADEEDQDE-----------YLAENIFWVPKEARWQYIN-----------------DN  87

Query  132  VKMRNVSWLVDLALDTIEKSNDKLKAILSRI-SQYQVEDNRLIDLIGLFSDTSFANPEYN  190
             K  +++ ++D A+ +IE+ N+ LK++L++  ++  ++ ++L D+I+LF+        ++
Sbjct  88   AKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALDKEKLGDIIDLFT--------FK  139

Query  191  GEKLNLKSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVNLIVEMLQPYQGRVFDPAM  250
                + + +D+LG+VYEYF+++FA AEGK++G++YTP SIV+L+VEM++PY+GR++DP  
Sbjct  140  VGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCC  199

Query  251  GSGGFFVSNDKFIETHAKEKHYTSDEQRRRISIYGQEANPTTWKLAAMNMVIRGIDFNFG  310
            GSGG FV +++F+E H        + +   I+IYGQE+NPTTWKLA MN+ IRGID ++G
Sbjct  200  GSGGMFVQSERFVEKH--------QGRLDDIAIYGQESNPTTWKLAKMNLAIRGIDNDLG  251

Query  311  KKHADSFTEDQHPDLRADFVMANPPFNLKEWWHKSLEQDARWQYGTPPEGNANFAWMQHM  370
             ++AD+F +D H +L+AD+++ANPPFN  +W +  L +D RWQ+G PP GNAN+AW++HM
Sbjct  252  ERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAWIEHM  311

Query  371  LYHLAPTGSMALLLANGSMSSNTGGEGEIRKRLIDEDVVECMVALPGQLFTNTQIPACIW  430
            +  LAP G+ +++LANGSMS++  +E EIRK LI++D+VEC+V+LPGQLF +TQIP C+W
Sbjct  312  ISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLW  371

Query  431  FLSKDKKNGVSFDKKKRNRSGEVLFIDARQLGYMKDRVLRDFNDADTQKIVQTFHNWQYG  490
            F+S++K      ++ K++R  E+LFIDAR++G M  R L++F+D D QK+ QT+H W+  
Sbjct  372  FISNNKG-----QNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRGT  426

Query  491  EN--YQDEAGFCYSAKLADIQKHDYILTPGRYVGAVAQEEDCEPFAEKMQKLTALLNQQM  548
            ++  Y+D AGFC  A+L ++++++YILTPGRYVG    EED EPF +KM+++T+ L++Q 
Sbjct  427  NDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQF  486

Query  549  AEGERLNAEIKKNLAGLGY  567
            A +  L+ +I+K+L GLGY
Sbjct  487  AKSKELEDQIRKSLEGLGY  505

266) FNFX1_0641 in NC_017450


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  424 bits (1595),  Expect = 6e-120, Method: Compositional matrix adjust.
 Identities = 251/516 (49%), Positives = 379/516 (74%), Gaps = 17/516 (3%)

Query  9    NTKSMEETLWDSANKLRGSVESSEYKHIVLGLIFLKFVSDTFEERREQLIAEGKEAFIDM  68
             T + EE LW++A+KLRGS++++EYK++ LGLIFLK+VSD+FEE+ E+L  +      D 
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ  64

Query  69   VEFYTMENVFYLPEESRWSYIKQNAKQDDIALKIDTALSTIEKNNPSLKGALPDNYFSRL  128
             E Y  EN+F +P E+RW YI++NAK+ +I+  ID A+ +IE++N SLKG LP +Y +R 
Sbjct  65   DE-YLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEY-ARP  122

Query  129  GLDVSKLSSLIDtinnintiAD-KGNDIVGRVYEYFLSKFAIAEGKGKGEFYTPKSIVNL  187
            +LD  KL+ +ID +      ++ + +D++GRVYEYF++KFA AEGK  GEFYTP SIV+L
Sbjct  123  ALDKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKL  182

Query  188  IANMIEPYKGKIYDPACGSGGMFVQSIKFIEAHKGNKKDISIYGQEYTGTTYKLAKMNLA  247
            + +MIEPYKG+IYDP CGSGGMFVQS +F+E H+G   DI+IYGQE   TT KLAKMNLA
Sbjct  183  LVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLA  242

Query  248  IRGISANLGDVPADTFFKDQHPDLKADFIMANPPFNQKDWRGANELLDDPRWAGYDVPPK  307
            IRGI  +LG+  ADTF +D H +LKAD+I+ANPPFN  DW G + LLDD RW  +++PPK
Sbjct  243  IRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDW-GQERLLDDYRWQ-FGIPPK  300

Query  308  SNANYGWILNIVSKLSQNGVAGFILANGALSGGG-EEYKIRKKLIENDLVEAILILPQNM  366
            +NANY+WI +++SKL+ NG AGF+LANG++S +G +E  IRK+LIE+DLVE I+ LP ++
Sbjct  301  GNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQL  360

Query  367  FYTTNISVTIWILNANKKQREFEQNGKQKNHRDRTKEILFMDLRQKGVPFEKKFIQFDEE  426
            FY+T+I+V +W+++ NK      QNGK    ++R +EILF+D R+ G    + + +F +E
Sbjct  361  FYSTQIPVCLWFISNNK-----GQNGK----KERENEILFIDAREIGHMVSRTLKEFSDE  411

Query  427  NIQEISDTYHTWQSDKE-AYQDIPEYCKSVTLEEVRAKDYSLVPSKYIEFVNRDENID-F  484
            +IQ +++TYH+W++ ++ +Y+DI+ +CK   LEEV+ ++Y L P++Y+ + + +E+ + F
Sbjct  412  DIQKVAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPF  471

Query  485  DEKMKNLQTEFRellkqeeqskqellTVFKELGYEI  520
            ++KM  + +E+ E + +  +  +++   +  LGY +
Sbjct  472  EQKMERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

267) hsdM in NC_020547


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  423 bits (1593),  Expect = 1e-119, Method: Compositional matrix adjust.
 Identities = 260/552 (48%), Positives = 380/552 (69%), Gaps = 68/552 (12%)

Query  24   RSSLDAANYKHIVLGLIFLKYVSDAFDERQSELKTLFAHQDDNNIYYMARDHYDSDEEYQ  83
            R+S+DAA+YK++ LGLIFLKYVSD+F+E+  ELK               +D Y  +E+ +
Sbjct  21   RGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELK---------------QDPYADEEDQD  65

Query  84   QAIADELEILDYYQEKNVFWVPKAARWLSIRNAAALPIGSIIWQDEQGQDVKLRSVSWLI  143
            +           Y   N+FWVPK ARW  I + A  P        E GQ         +I
Sbjct  66   E-----------YLAENIFWVPKEARWQYINDNAKKP--------EIGQ---------II  97

Query  144  DNAFDEIEKANPKLKGILNR-IGQYQLDNDKLLDLINTFSDTSFTNPEYNGEQLSLHSKD  202
            D+A   IE+ N  LKG+L +  ++  LD++KL D+I+ F+        ++  +   + +D
Sbjct  98   DKAMIAIENENESLKGVLPKEYARPALDKEKLGDIIDLFT--------FKVGDTESRKQD  149

Query  203  ILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEMLQPYKGRVYDPAMGSGGFFVSSE  262
            +LG+VYEYF+++FA AEGK++G++YTP SIV L+VEM++PYKGR+YDP  GSGG FV SE
Sbjct  150  VLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSE  209

Query  263  KFIEQHAQEKHYKASEQKKHISIYGQESNPTTWKLAAMNMAIRGIDFNFGKKNADSFLDD  322
            +F+E+H          +  +I+IYGQESNPTTWKLA MN+AIRGID ++G +NAD+F +D
Sbjct  210  RFVEKHQ--------GRLDDIAIYGQESNPTTWKLAKMNLAIRGIDNDLGERNADTFHND  261

Query  323  QHPDLRADFVMANPPFNIKDWWHASLESDVRWKYGTPPQGNANFAWMQHMLHHLSPTGSM  382
             H +L+AD+++ANPPFN  DW +  L  D RW++G PP+GNAN+AW++HM+  L+P G+ 
Sbjct  262  LHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTA  321

Query  383  ALLLANGSMSSNTNNEGEIRKNLIEADLVECIVALPGQLFTNTQIPACIWFLTKDKKNGL  442
            +++LANGSMS++ ++E EIRKNLIE DLVECIV+LPGQLF +TQIP C+WF++++K    
Sbjct  322  GFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKG---  378

Query  443  SLDKKKANREGKTLFIDARNLGYMKDRVLRDFTDADIAKITNALHAWQQGENFEGEAYQD  502
              ++ K +RE   LFIDAR++G M  R L++F+D DI K++++ HAW+  ++    +Y+D
Sbjct  379  --QNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRGTND---KPYED  433

Query  503  EKGFCFSAELKDIQKHDYVLTPGRYVGAVEQEDDGEPFAEKMLRLTAQLKEQFAESAVLE  562
              GFC  A+L ++++++Y+LTPGRYVG  + E+D EPF +KM R+T++L EQFA S  LE
Sbjct  434  IAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQFAKSKELE  493

Query  563  SEIKKNLKGLGY  574
             +I+K+L GLGY
Sbjct  494  DQIRKSLEGLGY  505

268) VCD_001188 in NC_012668


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  423 bits (1593),  Expect = 1e-119, Method: Compositional matrix adjust.
 Identities = 240/515 (47%), Positives = 373/515 (73%), Gaps = 19/515 (3%)

Query  18   SFEETLWDAANKLRGSVESSEYKHIVLSLIFLKFISDTFEKQRQKLIDAGLEKHIDMVPA  77
            +FEE LW+AA+KLRGS++++EYK++ L+LIFLK++SD+FE + + L +     + D    
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ-DE  66

Query  78   YTKDNVFYLPEESRWSFIQKNAKQEDIALKIDTALSTIEKTNKALQGALPDNYFSRLGLD  137
            Y  +N+F +P E+RW +I+ NAK+ +I+  ID A+ +IE+ N +L+G LP +Y +R +LD
Sbjct  67   YLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEY-ARPALD  125

Query  138  VSKLAALIDVIN-NIDTLANPHEDVVGRVYEYFLSKFAIAEGKGKGEFYTPKSIVNLIAE  196
              KL+ +ID++  +++   +  +DV+GRVYEYF++KFA AEGK  GEFYTP SIV+L+ E
Sbjct  126  KEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVE  185

Query  197  LIEPYKGKIYDPCCGSGGMFVQSMKFIENHKGNKKDISVYGQEYTGATYKLAKMNLAIRG  256
            +IEPYKG+IYDPCCGSGGMFVQS +F+E+H+G   DI++YGQE   +T KLAKMNLAIRG
Sbjct  186  MIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRG  245

Query  257  ISANLGAAAKDTFANDQHETLKADFIMANPPFNQKDWRASDELVDDHRWDGYETPPTSNA  316
            I  +LG    DTF ND H  LKAD+I+ANPPFN  DW + + L+DD RW+ +  PP +NA
Sbjct  246  IDNDLGERNADTFHNDLHKGLKADYILANPPFNASDW-GQERLLDDYRWQ-FGIPPKGNA  303

Query  317  NYGWILHMVSKLSENGVAGFILSNGALSGDGTEK-EIRKKLIENNLVEAIILLPRNMFYT  375
            NY+WI HM+SKL+ NG AGF+L+NG++S  G +  EIRK+LIE++LVE I+ LP ++FY+
Sbjct  304  NYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYS  363

Query  376  TDISVTLWILNKNKKAHTVPHEDVTRNYRDREEEILFMDLRQRGEPFEKKFIQFSEQDIK  435
            T+I+V LW++++NK  +           ++RE+EILF+D R+ G+   + + +FS++DI+
Sbjct  364  TQIPVCLWFISNNKGQNGK---------KERENEILFIDAREIGHMVSRTLKEFSDEDIQ  414

Query  436  ELADTLHTWQQVGAEDK-YKDIAEYCYSATKEEIATKDYSLVPSKYIEFTNRDENIN-FD  493
             +A+T H+W+  G++DK Y DIA +C  A  EE+  ++Y L P++Y+ +++ +E+ + F+
Sbjct  415  KVAQTYHAWR--GTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFE  472

Query  494  EKMSNLKEQFSQLLAQEEKSKNELLNVFKELGYEI  528
            +KM  +  ++S+ +A+     +++ + +  LGY +
Sbjct  473  QKMERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

269) VCD_002511 in NC_012668


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  423 bits (1593),  Expect = 1e-119, Method: Compositional matrix adjust.
 Identities = 240/515 (47%), Positives = 373/515 (73%), Gaps = 19/515 (3%)

Query  18   SFEETLWDAANKLRGSVESSEYKHIVLSLIFLKFISDTFEKQRQKLIDAGLEKHIDMVPA  77
            +FEE LW+AA+KLRGS++++EYK++ L+LIFLK++SD+FE + + L +     + D    
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ-DE  66

Query  78   YTKDNVFYLPEESRWSFIQKNAKQEDIALKIDTALSTIEKTNKALQGALPDNYFSRLGLD  137
            Y  +N+F +P E+RW +I+ NAK+ +I+  ID A+ +IE+ N +L+G LP +Y +R +LD
Sbjct  67   YLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEY-ARPALD  125

Query  138  VSKLAALIDVIN-NIDTLANPHEDVVGRVYEYFLSKFAIAEGKGKGEFYTPKSIVNLIAE  196
              KL+ +ID++  +++   +  +DV+GRVYEYF++KFA AEGK  GEFYTP SIV+L+ E
Sbjct  126  KEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVE  185

Query  197  LIEPYKGKIYDPCCGSGGMFVQSMKFIENHKGNKKDISVYGQEYTGATYKLAKMNLAIRG  256
            +IEPYKG+IYDPCCGSGGMFVQS +F+E+H+G   DI++YGQE   +T KLAKMNLAIRG
Sbjct  186  MIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRG  245

Query  257  ISANLGAAAKDTFANDQHETLKADFIMANPPFNQKDWRASDELVDDHRWDGYETPPTSNA  316
            I  +LG    DTF ND H  LKAD+I+ANPPFN  DW + + L+DD RW+ +  PP +NA
Sbjct  246  IDNDLGERNADTFHNDLHKGLKADYILANPPFNASDW-GQERLLDDYRWQ-FGIPPKGNA  303

Query  317  NYGWILHMVSKLSENGVAGFILSNGALSGDGTEK-EIRKKLIENNLVEAIILLPRNMFYT  375
            NY+WI HM+SKL+ NG AGF+L+NG++S  G +  EIRK+LIE++LVE I+ LP ++FY+
Sbjct  304  NYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYS  363

Query  376  TDISVTLWILNKNKKAHTVPHEDVTRNYRDREEEILFMDLRQRGEPFEKKFIQFSEQDIK  435
            T+I+V LW++++NK  +           ++RE+EILF+D R+ G+   + + +FS++DI+
Sbjct  364  TQIPVCLWFISNNKGQNGK---------KERENEILFIDAREIGHMVSRTLKEFSDEDIQ  414

Query  436  ELADTLHTWQQVGAEDK-YKDIAEYCYSATKEEIATKDYSLVPSKYIEFTNRDENIN-FD  493
             +A+T H+W+  G++DK Y DIA +C  A  EE+  ++Y L P++Y+ +++ +E+ + F+
Sbjct  415  KVAQTYHAWR--GTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFE  472

Query  494  EKMSNLKEQFSQLLAQEEKSKNELLNVFKELGYEI  528
            +KM  +  ++S+ +A+     +++ + +  LGY +
Sbjct  473  QKMERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

270) VCD_002618 in NC_012668


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  423 bits (1593),  Expect = 1e-119, Method: Compositional matrix adjust.
 Identities = 240/515 (47%), Positives = 373/515 (73%), Gaps = 19/515 (3%)

Query  18   SFEETLWDAANKLRGSVESSEYKHIVLSLIFLKFISDTFEKQRQKLIDAGLEKHIDMVPA  77
            +FEE LW+AA+KLRGS++++EYK++ L+LIFLK++SD+FE + + L +     + D    
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ-DE  66

Query  78   YTKDNVFYLPEESRWSFIQKNAKQEDIALKIDTALSTIEKTNKALQGALPDNYFSRLGLD  137
            Y  +N+F +P E+RW +I+ NAK+ +I+  ID A+ +IE+ N +L+G LP +Y +R +LD
Sbjct  67   YLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEY-ARPALD  125

Query  138  VSKLAALIDVIN-NIDTLANPHEDVVGRVYEYFLSKFAIAEGKGKGEFYTPKSIVNLIAE  196
              KL+ +ID++  +++   +  +DV+GRVYEYF++KFA AEGK  GEFYTP SIV+L+ E
Sbjct  126  KEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVE  185

Query  197  LIEPYKGKIYDPCCGSGGMFVQSMKFIENHKGNKKDISVYGQEYTGATYKLAKMNLAIRG  256
            +IEPYKG+IYDPCCGSGGMFVQS +F+E+H+G   DI++YGQE   +T KLAKMNLAIRG
Sbjct  186  MIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRG  245

Query  257  ISANLGAAAKDTFANDQHETLKADFIMANPPFNQKDWRASDELVDDHRWDGYETPPTSNA  316
            I  +LG    DTF ND H  LKAD+I+ANPPFN  DW + + L+DD RW+ +  PP +NA
Sbjct  246  IDNDLGERNADTFHNDLHKGLKADYILANPPFNASDW-GQERLLDDYRWQ-FGIPPKGNA  303

Query  317  NYGWILHMVSKLSENGVAGFILSNGALSGDGTEK-EIRKKLIENNLVEAIILLPRNMFYT  375
            NY+WI HM+SKL+ NG AGF+L+NG++S  G +  EIRK+LIE++LVE I+ LP ++FY+
Sbjct  304  NYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYS  363

Query  376  TDISVTLWILNKNKKAHTVPHEDVTRNYRDREEEILFMDLRQRGEPFEKKFIQFSEQDIK  435
            T+I+V LW++++NK  +           ++RE+EILF+D R+ G+   + + +FS++DI+
Sbjct  364  TQIPVCLWFISNNKGQNGK---------KERENEILFIDAREIGHMVSRTLKEFSDEDIQ  414

Query  436  ELADTLHTWQQVGAEDK-YKDIAEYCYSATKEEIATKDYSLVPSKYIEFTNRDENIN-FD  493
             +A+T H+W+  G++DK Y DIA +C  A  EE+  ++Y L P++Y+ +++ +E+ + F+
Sbjct  415  KVAQTYHAWR--GTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFE  472

Query  494  EKMSNLKEQFSQLLAQEEKSKNELLNVFKELGYEI  528
            +KM  +  ++S+ +A+     +++ + +  LGY +
Sbjct  473  QKMERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

271) VCD_003046 in NC_012668


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  423 bits (1593),  Expect = 1e-119, Method: Compositional matrix adjust.
 Identities = 240/515 (47%), Positives = 373/515 (73%), Gaps = 19/515 (3%)

Query  18   SFEETLWDAANKLRGSVESSEYKHIVLSLIFLKFISDTFEKQRQKLIDAGLEKHIDMVPA  77
            +FEE LW+AA+KLRGS++++EYK++ L+LIFLK++SD+FE + + L +     + D    
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ-DE  66

Query  78   YTKDNVFYLPEESRWSFIQKNAKQEDIALKIDTALSTIEKTNKALQGALPDNYFSRLGLD  137
            Y  +N+F +P E+RW +I+ NAK+ +I+  ID A+ +IE+ N +L+G LP +Y +R +LD
Sbjct  67   YLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEY-ARPALD  125

Query  138  VSKLAALIDVIN-NIDTLANPHEDVVGRVYEYFLSKFAIAEGKGKGEFYTPKSIVNLIAE  196
              KL+ +ID++  +++   +  +DV+GRVYEYF++KFA AEGK  GEFYTP SIV+L+ E
Sbjct  126  KEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVE  185

Query  197  LIEPYKGKIYDPCCGSGGMFVQSMKFIENHKGNKKDISVYGQEYTGATYKLAKMNLAIRG  256
            +IEPYKG+IYDPCCGSGGMFVQS +F+E+H+G   DI++YGQE   +T KLAKMNLAIRG
Sbjct  186  MIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRG  245

Query  257  ISANLGAAAKDTFANDQHETLKADFIMANPPFNQKDWRASDELVDDHRWDGYETPPTSNA  316
            I  +LG    DTF ND H  LKAD+I+ANPPFN  DW + + L+DD RW+ +  PP +NA
Sbjct  246  IDNDLGERNADTFHNDLHKGLKADYILANPPFNASDW-GQERLLDDYRWQ-FGIPPKGNA  303

Query  317  NYGWILHMVSKLSENGVAGFILSNGALSGDGTEK-EIRKKLIENNLVEAIILLPRNMFYT  375
            NY+WI HM+SKL+ NG AGF+L+NG++S  G +  EIRK+LIE++LVE I+ LP ++FY+
Sbjct  304  NYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYS  363

Query  376  TDISVTLWILNKNKKAHTVPHEDVTRNYRDREEEILFMDLRQRGEPFEKKFIQFSEQDIK  435
            T+I+V LW++++NK  +           ++RE+EILF+D R+ G+   + + +FS++DI+
Sbjct  364  TQIPVCLWFISNNKGQNGK---------KERENEILFIDAREIGHMVSRTLKEFSDEDIQ  414

Query  436  ELADTLHTWQQVGAEDK-YKDIAEYCYSATKEEIATKDYSLVPSKYIEFTNRDENIN-FD  493
             +A+T H+W+  G++DK Y DIA +C  A  EE+  ++Y L P++Y+ +++ +E+ + F+
Sbjct  415  KVAQTYHAWR--GTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFE  472

Query  494  EKMSNLKEQFSQLLAQEEKSKNELLNVFKELGYEI  528
            +KM  +  ++S+ +A+     +++ + +  LGY +
Sbjct  473  QKMERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

272) Pedsa_1279 in NC_015177


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  422 bits (1589),  Expect = 2e-119, Method: Compositional matrix adjust.
 Identities = 248/512 (49%), Positives = 369/512 (73%), Gaps = 17/512 (3%)

Query  11   EEILWDSANKLRGSVEPSEYKHVVLSLIFLKFASDKFIRRREELIKEGQNAFLEIPEFYQ  70
            EE LW++A+KLRGS++++EYK+V L+LIFLK+ SD F  + EEL K++  A  E  + Y 
Sbjct  10   EEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL-KQDPYADEEDQDEYL  68

Query  71   AENVFYLPVESRWTYIIENAKQEDITLKVDSALKTIERTNKSLEGALPDNYFSRLGLDQS  130
            AEN+F +P E+RW YI +NAK+ +I   +D A+ +IE  N SL G LP +Y +R +LD+ 
Sbjct  69   AENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEY-ARPALDKE  127

Query  131  KFSALLDTIN-NIDTLRDEAQDIVGRVYEYFLSKFAIAEGKGKGEFYTPKSIVNLIAEMI  189
            K++ ++D +  +++      QD++GRVYEYF++KFA AEGK  GEFYTP SIV+L+ EMI
Sbjct  128  KLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMI  187

Query  190  EPYKGKIYDPSCGSGGMFVQSLKFIEKHQGNKKDISIYGQELTNTTFKLAKMNLAIRGIS  249
            EPYKG+IYDP CGSGGMFVQS +F+EKHQG   DI+IYGQE   TT KLAKMNLAIRGI 
Sbjct  188  EPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRGID  247

Query  250  ANLGNKAADTFADDQHKELKADYIMANPPFNLKDWRAENELTDDTRWTGYEVPPKSNANY  309
             +LG++ ADTF +D HK LKADYI+ANPPFN  DW +++ L DD RW  + +PPK+NANY
Sbjct  248  NDLGERNADTFHNDLHKGLKADYILANPPFNASDW-GQERLLDDYRWQ-FGIPPKGNANY  305

Query  310  AWILNMISKLSQNGVAGFILANGALSGGG-EEYKIRKQIIENDLVEAIVILPRAMFYSTD  368
            AWI +MISKL+ NG AGF+LANG++S +G +E  IRK++IE+DLVE IV LP  +FYST+
Sbjct  306  AWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQ  365

Query  369  ISVTLWILNRNKTERTVEVNDGIKNYRNRKGEVLFMDLRQKGEPFEKKFIQFSENDIEYI  428
            I+V LW+++ NK +            ++R  E+LF+D R+ G+   + + +FS++DI+ +
Sbjct  366  IPVCLWFISNNKGQNGK---------KERENEILFIDAREIGHMVSRTLKEFSDEDIQKV  416

Query  429  TGTYHNWQQKDFESKYTNEAEYCYSANVEEIRKKDYSLVPSKYIEFVNRDENLD-YDTQM  487
            + TYH W+  + +  Y + A +C  AN+EE+++++Y L P++Y+ + + +E+ + ++ +M
Sbjct  417  AQTYHAWRGTN-DKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKM  475

Query  488  QSLQTELKDLFQQEEALKQEVANVFKSLGYEL  519
            + + +EL + F +   L +++ + + +LGY +
Sbjct  476  ERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

273) MM_0429 in NC_003901


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  421 bits (1586),  Expect = 4e-119, Method: Compositional matrix adjust.
 Identities = 261/568 (46%), Positives = 391/568 (69%), Gaps = 70/568 (12%)

Query  11   DLDNQLWRAADKLRSNLDAANYKHVVLGLIFLKYVSDAFEERQQELTELFQKDDDDNIYY  70
            +++++LW+AADKLR+++DAA+YK+V LGLIFLKYVSD+FEE+ +EL              
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELK-------------  54

Query  71   LPREDYDSDEAYQQAIAEELEIGDYYTEKNVFWVPKTARWNKLRDVITLPTGSVIWQDEQ  130
                        Q++ A+E + ++Y +E N+FWVPK ARW+ + D               
Sbjct  55   ------------QDPYADEEDQDEYLAE-NIFWVPKEARWQYIND---------------  86

Query  131  GEDVKLRSVSWLIDNAFDDIEKANPKLKGILNR-ISQYQLDADKLIGLINEFSLTSFNNP  189
              + K   ++ +ID+A   IE+ N  LKG+L +  ++  LD +KL ++I+ F+       
Sbjct  87   --NAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALDKEKLGDIIDLFT-------  137

Query  190  EYNGEKLNLKSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEMLEPYKGRVYD  249
             ++    + + +D+LG+VYEYF+++FA AEGK++G++YTP SIV L+VEM+EPYKGR+YD
Sbjct  138  -FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYD  196

Query  250  PAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDF  309
            P  GSGG FV S++F+EKH          +  +I++YGQESNPTTWKLA MN+ IRGID 
Sbjct  197  PCCGSGGMFVQSERFVEKHQG--------RLDDIAIYGQESNPTTWKLAKMNLAIRGIDN  248

Query  310  NFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPT  369
            ++G +NAD+F +D H +L+AD++++NPPFN  DW +E+L DD RW +          PP 
Sbjct  249  DLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGI--------PPK  300

Query  370  GNANFAWMLHMLYHLAPTGSMALLLANGSMSSNTNNEGEIRKTLVEQDLVECMVALPGQL  429
            GNAN+AW+ HM+  LAP G+ +++LANGSMS++ ++E EIRK L+EQDLVEC+V+LPGQL
Sbjct  301  GNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQL  360

Query  430  FTNTQIPACIWFLTKDKNAKNGKRDRRGQVLFIDARKLGYMKDRVLRDFKDEDIQKLADT  489
            F +TQIP C+WF++++K ++NGK++R  ++LFIDAR +G M  R L++F DEDIQK+A+T
Sbjct  361  FYSTQIPVCLWFISNNK-GQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQT  419

Query  490  FHNWQQEWSEE-NNQAGFCFSADLALIRKNDFVLTPGRYVGAEAEEDDGILFADKMAVLT  548
            +H W+       ++ AGFC  A+L  +++N+++LTPGRYVG    E+D   F +KM  +T
Sbjct  420  YHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERIT  479

Query  549  SQLKEQFEESRKLEAQIKQNLAGLGFDV  576
            S+L EQF  S+ LE QI+++L GLG++V
Sbjct  480  SELSEQFAKSKELEDQIRKSLEGLGYGV  507

274) Mbur_0483 in NC_007955


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  420 bits (1580),  Expect = 1e-118, Method: Compositional matrix adjust.
 Identities = 260/561 (47%), Positives = 391/561 (70%), Gaps = 66/561 (11%)

Query  12   FETKLWKAADKLRSNMDVANYKHVVLGLIFLKYVSDAFEERQNELVELFKKDDDENIYYL  71
            FE KLW+AADKLR++MD A+YK+V LGLIFLKYVSD+FEE+ +EL               
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL---------------  53

Query  72   PREDYSSTEEYQHAIAEELEIRDYYAEKNVFWVPKTARWDILKEKSVLSLNTVIWQNEQG  131
             ++ Y+  E+           +D Y   N+FWVPK ARW+ +++++              
Sbjct  54   KQDPYADEED-----------QDEYLAENIFWVPKEARWQYINDNA--------------  88

Query  132  KDVKLKSVSWLIDNALDEIEKANPKLKGILNR-IGQYQLDSEKLIGLINNFSNTRFHHPE  190
               K   ++ +ID+A+  IE+ N  LKG+L +  ++  LD EKL ++I+ F+        
Sbjct  89   ---KKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALDKEKLGDIIDLFT--------  137

Query  191  FNDKKLNLKSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEMLEPYKGRVYDP  250
            F+    + + +D+LG+VYEYF+++FA AEGK++G++YTP SIV L+VEM+EPYKGR+YDP
Sbjct  138  FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDP  197

Query  251  AMGSGGFFVSSDKFIENHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMAIRGIDFN  310
              GSGG FV S++F+E+H          +  +I++YGQESNPTTWKLA MN+AIRGID +
Sbjct  198  CCGSGGMFVQSERFVEKHQG--------RLDDIAIYGQESNPTTWKLAKMNLAIRGIDND  249

Query  311  FGKKNADSFLDDQHPDLRADFVMANPPFNMKEWWHEKLADDPRWKYGTPPKNNANFAWMQ  370
            +G +NAD+F +D H +L+AD+++ANPPFN  +W +E+L DD RW++G PPK NAN+AW++
Sbjct  250  LGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAWIE  309

Query  371  HMLHHLAPTGSMALLLANGSMSSNTNNEGKIRKTLVENDIVECMVALPGQLFTNTQIPAC  430
            HM+  LAP G+ +++LANGSMS++ ++E  IRK L+E+D+VEC+V+LPGQLF +TQIP C
Sbjct  310  HMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVC  369

Query  431  ICFLTkdkaakddkRNRHGEILFIDARNLGFMKDRVLRDFKDEDIQRIADTFHTWQHNWS  490
            + F++ ++ ++++K++R+ EILFIDAR++G M  R L++F DEDIQ++A+T+H+W+   +
Sbjct  370  LWFIS-NNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRG--T  426

Query  491  EDK---NEPGFCFSANHATIEKHNFVLTPGRYVGAEAEVDDGIPFDAKMASLTSKLKTQF  547
            +DK   + +GFC  AN   + +++++LTPGRYVG     +D  PF+ KM  +TS L  QF
Sbjct  427  NDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQF  486

Query  548  EESDKLEEQIRKNLAGLGYDI  568
              S  LE+QIRK+L GLGY++
Sbjct  487  AKSKELEDQIRKSLEGLGYGV  507

275) hsdM in NC_002663


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  420 bits (1581),  Expect = 9e-119, Method: Compositional matrix adjust.
 Identities = 244/559 (44%), Positives = 392/559 (71%), Gaps = 65/559 (11%)

Query  12   LDAKLWKSADKLRSNIEAANYKHVILSLIFLKYVSDAFLARQHSIQQQLTDPEHLYYLDP  71
            ++ KLW++ADKLR++++AA+YK+V L+LIFLKYVSD+F  + + ++Q   DP        
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQ---DP--------  57

Query  72   SFYDSEEEYQQALANELEQLDYYTEENVFWVPKTARWDVLKTKATTPVGAVLWQDEQGED  131
              Y  EE+ ++           Y  EN+FWVPK ARW+ ++                 ++
Sbjct  58   --YADEEDQDE-----------YLAENIFWVPKEARWQYIN-----------------DN  87

Query  132  VKMRNVSWLVDLALDTIEKSNDKLKNILARI-SQYQVEDNRLIELISLFSDTYFANPEYQ  190
             K  +++ ++D A+ +IE+ N+ LK +L++  ++  ++ ++L ++I LF+        ++
Sbjct  88   AKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALDKEKLGDIIDLFT--------FK  139

Query  191  GEKLNLKSKDILGHVYEYFLGKFALAEGKNGGEYYTPKSIVNLIVEMLQPYQGRVFDPAM  250
                + + +D+LG+VYEYF++KFA AEGKN+GE+YTP SIV+L+VEM++PY+GR++DP  
Sbjct  140  VGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCC  199

Query  251  GSGGFFVSNDKFIETHAKEKHYASDEQRRRISIYGQESTSTTWKLAVMNMVIRGIDFNFG  310
            GSGG FV +++F+E H        + +   I+IYGQES +TTWKLA MN+ IRGID ++G
Sbjct  200  GSGGMFVQSERFVEKH--------QGRLDDIAIYGQESNPTTWKLAKMNLAIRGIDNDLG  251

Query  311  KKHADSFTEDQHPDLRADFVMANPPFNKDDWWHESLEHDARWQYGTPPVGNANFAWVQHM  370
             ++AD+F +D H +L+AD+++ANPPFN  DW +E L +D RWQ+G PP GNAN+AW++HM
Sbjct  252  ERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAWIEHM  311

Query  371  LYHLAPTGSMALLLANGSMSSNTGGEGEIRKRLIDEDVVECMVSLPDKLFTNTRIPACIW  430
            +  LAP G+ +++LANGSMS++  +E EIRK LI++D+VEC+V+LP++LF +T+IP C+W
Sbjct  312  ISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLW  371

Query  431  FLTKDKKNGVSFDKKKRNRSGEVLFIDARQLGYMKDRVLRDFTDADTQKIVQTFHNWQ--  488
            F++++K      ++ K++R  E+LFIDAR++G M  R L++F+D D QK+ QT+H W+  
Sbjct  372  FISNNKG-----QNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRGT  426

Query  489  YGESYQDEAGFCYSAKLADIQKHDYILTPGRYVGAVAQEEDCEPFAEKMQKLTALLNQQM  548
             + +Y+D AGFC  A+L ++++++YILTPGRYVG    EED EPF +KM+++T+ L++Q 
Sbjct  427  NDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQF  486

Query  549  TEGERLNAEIKKNLAGLGY  567
            + +  L+ +I+K+L GLGY
Sbjct  487  AKSKELEDQIRKSLEGLGY  505

276) Aflv_2059 in NC_011567


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  418 bits (1575),  Expect = 2e-118, Method: Compositional matrix adjust.
 Identities = 244/520 (47%), Positives = 374/520 (72%), Gaps = 23/520 (4%)

Query  1    MTVKADIDFQKDLFEAANKMRGSVAPADYKHYVLPLIFLRYLSNKYEQRRKELEQIVKDP  60
            M + A I+F+  L +AA+K+RGS+ +A+YK+  L LIFL+Y+S+ +E++  EL Q   DP
Sbjct  1    MLLMATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQ---DP  57

Query  61   SSDWYTEDDEMRQIIITDPDQYKAENVFVVPEEASWSYIMKNAKQPNIKEILDNAMKRLE  120
                Y++++        D D+Y AEN+F VP EA W YI  NAK+P+I +I+D+AM  +E
Sbjct  58   ----YADEE--------DQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIE  105

Query  121  EENPELEGILPRIYQGSNLPAENVAGLIEIFSRDVFSANTHESVDILGRTYEYFISSFAA  180
            +EN  L G+LP+ Y  + L  E+++++I++F+  V  ++++   D+LGR YEYFI+ FA+
Sbjct  106  NENESLKGVLPKEYARPALDKEKLGDIIDLFTFKVGDTESRKQ-DVLGRVYEYFIAKFAS  164

Query  181  SEGNRGGEFFTPSSIVKLLVAMLEPKSGIVFDPACGSGGMFIQSEEYAPNKHA----LSF  236
            +EG+ +GEF+TPSSIVKLLV M+EP  G ++DP CGSGGMF+QSE +  + ++    +++
Sbjct  165  AEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAI  224

Query  237  YGQENVVTTVRLGKMNVLLHGINAEI--RLGDSLLNDQFPDLKADYIIANPPFNQKDWGA  294
            YGQE+  TT +L+KMN+ ++GI+ ++  R +D++ ND   +LKADYI+ANPPFN  DWG 
Sbjct  225  YGQESNPTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQ  284

Query  295  DRLSKNDPRLIGPVTNSNANYMWMQHFLYHLNDTGTAGFVMANGAMTTNVKEEKEVRQKL  354
            +RL  +  + +G   ++NANY W++H +  L   GTAGFV+ANG+M+T+ K+E E+R++L
Sbjct  285  ERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNL  344

Query  355  VDEGYIDCIVQLPEKLFFTTGIPCCLFFLSKNRDGKNGYRARKNEILFIDARKMGTLVSR  414
            ++++ ++CIV LP +LF++T IP CL F+S+N+ G+NG + R NEILFIDAR +G +VSR
Sbjct  345  IEQDLVECIVTLPGQLFYSTQIPVCLWFISNNK-GQNGKKERENEILFIDAREIGHMVSR  403

Query  415  KQKALSKEEIDKIAAVYHAYKYEEAEGYEDVTGFCKVATIEEVQANDYKLTPGIYVGTEV  474
              K +S E+I+K+A  YHA +  +   YED++GFCKVA +EEV+ N+Y LTPG YVG   
Sbjct  404  TLKEFSDEDIQKVAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLAD  463

Query  475  SDEDDTPFEEKMAELTQRLLEQFEESNRLQEKIKRDLEGL  514
             +ED+ PFE+KM  +T  L EQF  S+ L+++I++ LEGL
Sbjct  464  VEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

277) GHH_c13080 in NC_020210


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  418 bits (1574),  Expect = 3e-118, Method: Compositional matrix adjust.
 Identities = 244/520 (47%), Positives = 371/520 (72%), Gaps = 23/520 (4%)

Query  1    MTVKADIDFQKDLFEAANKMRGSVAPADYKHYVLPLIFLRYLSNKYEQRRKELEQIVKDP  60
            M + A I+F+  L +AA+K+RGS+ +A+YK+  L LIFL+Y+S+ +E++  EL Q   DP
Sbjct  1    MLLMATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQ---DP  57

Query  61   SSDWYTEDDEMRQVIITDPDQYKAENVFVVPEEASWSYIMKNAKQPNIKEILDNAMKRLE  120
                Y++++        D D+Y AEN+F VP EA W YI  NAK+P+I +I+D+AM  +E
Sbjct  58   ----YADEE--------DQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIE  105

Query  121  EENPELEGILPRIYQGSNLPPENVAGLIEIFSRDVFSANTDDSVDILGRTYEYFISSFAA  180
            +EN  L G+LP+ Y  + L  E+++++I++F+  V +       D+LGR YEYFI+ FA+
Sbjct  106  NENESLKGVLPKEYARPALDKEKLGDIIDLFTFKV-GDTESRKQDVLGRVYEYFIAKFAS  164

Query  181  SEGNRGGEFFTPSSIVKLLVAMLEPKSGIVFDPACGSGGMFIQSEEYAPNKHA----LSF  236
            +EG+ +GEF+TPSSIVKLLV M+EP  G ++DP CGSGGMF+QSE +  + ++    +++
Sbjct  165  AEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAI  224

Query  237  YGQENVVTTVRLGKMNVLLHGINAEI--RLGDSLLNDQFPDLKADYVIANPPFNQKDWGA  294
            YGQE+  TT +L+KMN+ ++GI+ ++  R +D++ ND   +LKADY++ANPPFN  DWG 
Sbjct  225  YGQESNPTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQ  284

Query  295  DRLSKNDPRLIGPVTNSNANYMWMQHFLYHLNDTGTAGFVMANGAMTTNVKEEKEVRQKL  354
            +RL  +  + +G   ++NANY W++H +  L   GTAGFV+ANG+M+T+ K+E E+R++L
Sbjct  285  ERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNL  344

Query  355  VDEGYIDCIVQLPEKLFFTTGIPCCLFFLSKNRDGKNGYRARKNEILFIDARKMGTLVSR  414
            ++++ ++CIV LP +LF++T IP CL F+S+N+ G+NG + R NEILFIDAR +G +VSR
Sbjct  345  IEQDLVECIVTLPGQLFYSTQIPVCLWFISNNK-GQNGKKERENEILFIDAREIGHMVSR  403

Query  415  KQKALSKEEIDKIAAVYHAYKYEEAEQYEDVAGFCKVATIDEVRANDYKLTPGIYVGTEV  474
              K +S E+I+K+A  YHA +  +   YED+AGFCKVA ++EV+ N+Y LTPG YVG   
Sbjct  404  TLKEFSDEDIQKVAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLAD  463

Query  475  SNEDDVPFEEKMAELTQRLLEQFEESNRLQEKIKKDLEGL  514
             +ED+ PFE+KM  +T  L EQF  S+ L+++I+K LEGL
Sbjct  464  VEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

278) I917_19320 in NC_021192


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  418 bits (1573),  Expect = 4e-118, Method: Compositional matrix adjust.
 Identities = 252/524 (49%), Positives = 377/524 (72%), Gaps = 31/524 (5%)

Query  18   LKDTLWKAADKLRGSLXXSQYKDVILGLVFLKYVSDAYDerreairaelaaeGMEESQIE  77
            + + LW+AADKLRGS+  ++YK+V LGL+FLKYVSD+++E+ E          + +    
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYE---------ELKQDPYA  59

Query  78   DLIDDPEQYQGYGVFVVPVSARWKFLAENXKGKPAVGGEPAKNIGQLIDEAMDAVMKANP  137
            D  +D ++Y +  +F VP  ARW+++ +N K KP        +IGQ+ID AM A+ + N 
Sbjct  60   D-EEDQDEYLAENIFWVPKEARWQYINDNAK-KP--------EIGQIIDKAMIAIENENE  109

Query  138  TLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLGNFARAEG  197
            +L G LP+ Y +  +D+ +LG++IDLF       + E R +D++G VYEYF+++FA AEG
Sbjct  110  SLKGVLPKEYARPALDKEKLGDIIDLFTFK--VGDTESRKQDVLGRVYEYFIAKFASAEG  167

Query  198  KRGGEFFTPPSVVKVIVEVLEPSSGRVYDPCCGSGGMFVQTEKFIYEHDGDPKDVSIYGQ  257
            K +GEF+TP+S+VK++VE++EP  GR+YDPCCGSGGMFVQ+E+F+  H+G   D++IYGQ
Sbjct  168  KNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQ  227

Query  258  ESIEETWRMAKMNLAIHGIDNKGLGARWSDTFARDQHPDVQMDYVMANPPFNIKDWARNE  317
            ES   TW++AKMNLAI+GIDN +LG R +DTF  D H +++ DY++ANPPFN  DW+++ 
Sbjct  228  ESNPTTWKLAKMNLAIRGIDN-DLGERNADTFHNDLHKGLKADYILANPPFNASDWGQER  286

Query  318  --EDPRWRFxxppannanYAWIQHILYKLAPGGRAGVVMAngsmssnsngegDIRAQIVE  375
              +D RW+F  PP  NANYAWI+H++ KLAP G AG V+ANGSMS+++++E +IR +++E
Sbjct  287  LLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIE  346

Query  376  ADLVSCMVALPTQLFRSTGIPVCLWFFAKDKAAGKQGSIDRCGQVLFIDARELGDLVDRA  435
             DLV C+V+LP QLF ST IPVCLWF++++K  G++G  +R  ++LFIDARE+G++V R+
Sbjct  347  QDLVECIVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMVSRT  404

Query  436  ERALTNEEIVRIGDTFHAWRGSKSAAVKGIMYEDVPGFCKSATLAEIKATDYALTPGRYV  495
             + +++E+I ++++T+HAWRG++  +     YED++GFCK A L E+K  +Y LTPGRYV
Sbjct  405  LKEFSDEDIQKVAQTYHAWRGTNDKP-----YEDIAGFCKVANLEEVKNNEYILTPGRYV  459

Query  496  GTPAVEDDGEPIDEKMARLSKALLEAFDESARLXRVVREQLGRL  539
            G + VE+D EP+++KM R++  L E F  S  L   +R  L  L
Sbjct  460  GLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

279) EJP617_05140 in NC_017445


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  418 bits (1572),  Expect = 5e-118, Method: Compositional matrix adjust.
 Identities = 265/560 (48%), Positives = 397/560 (71%), Gaps = 64/560 (11%)

Query  12   LDSKFWKAADKLRANMDAANYKHVVLGLIFLKYVSDAFEARQKELTKLFREVGNADNSYA  71
            ++ K+W+AADKLR++MDAA+YK+V LGLIFLKYVSD+FE +  EL               
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELK--------------  54

Query  72   IPREEYDSEAAYQQAIDQELEVEDYYAEKNVFWVPKAARWETLKSQAALPVGSVLGLDAK  131
                    + +Y +  DQ+    +Y AE N+FWVPK ARW+ ++ +A  P          
Sbjct  55   --------QDPYADEEDQD----EYLAE-NIFWVPKEARWQYINDNAKKP----------  91

Query  132  GKEVTLRSVSLLIDNALDKIEQSNDKLKGIINR-IAHYQLGNEVLIGLINTFSDANFSNP  190
                    ++ +ID+A+  IE+ N+ LKG++ +  A+  L++E L ++I+ F+       
Sbjct  92   -------EIGQIIDKAMIAIENENESLKGVLPKEYARPALDKEKLGDIIDLFT-------  137

Query  191  QYNGEQLKLSSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEMLQPYQGRVYD  250
             ++  +     +D+LG+VYEYF+++FA AEGK++G++YTP SIV L+VEM++PY+GR+YD
Sbjct  138  -FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYD  196

Query  251  PAMGSGGFFVSSDRFIEQHADAQRYNAAEQKQKIVVYGQESNPTTWRLAAMNMAIRGIDF  310
            P  GSGG FV S+RF+E+H +        + + I +YGQESNPTTW+LA MN+AIRGID 
Sbjct  197  PCCGSGGMFVQSERFVEKHQG--------RLDDIAIYGQESNPTTWKLAKMNLAIRGIDN  248

Query  311  EFGTKNADTLLDDQHPDLRADFVMANPPFNMKEWWNAKLENDVRWQYGTPPQGNANFAWM  370
            ++G +NADT+ +D H +L+AD+++ANPPFN  +W + +L +D RWQ+G PP+GNAN+AW+
Sbjct  249  DLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAWI  308

Query  371  QHMIHHLAPKgamalllangsmssnsnnegeIRRKLVEADLVECMVALPGQLFTNTQIPA  430
            +HMI  LAP+G+ +++LANGSMS+++++E EIR++L+E DLVEC+V+LPGQLF +TQIP 
Sbjct  309  EHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIPV  368

Query  431  CIWLLTKDKSGGNGKAHRKGEVLFIDARQTGFMKDRVLRDFTTEDIAKIADTFHAWQ--T  488
            C+W+++++K G NGK +R  E+LFIDAR+ G M  R L++F+ EDI K+A+T+HAW+   
Sbjct  369  CLWFISNNK-GQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRGTN  427

Query  489  DKDYQDQAGFCFAASLADIQKNDFVLTPGRYVGAAEQEEDAEPFAEKMTRLTQQLKVQLA  548
            DK Y+D AGFC  A+L ++++N+++LTPGRYVG A+ EED EPF +KM R+T +L  Q+A
Sbjct  428  DKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQFA  487

Query  549  ESAGLEKQIKANLGGLGYEL  568
             S  LE QI+ +L GLGY +
Sbjct  488  KSKELEDQIRKSLEGLGYGV  507

280) Fluta_2798 in NC_015321


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  417 bits (1571),  Expect = 6e-118, Method: Compositional matrix adjust.
 Identities = 245/518 (48%), Positives = 371/518 (72%), Gaps = 21/518 (4%)

Query  8    NTKSIEETLWDSANKLRGTVESSEYKHVVLALIFLKFTSDKFEERRQELVAEGKDKYLEM  67
             T ++EE LW++A+KLRG+++++EYK+V L+LIFLK+ SD FEE+ +EL    +D Y + 
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL---KQDPYADE  61

Query  68   PEF--YNMKNVFFLAEESRWSYIIANAKQNDISLKIDTALHTVEKNNASLKGALPDNYFS  125
             +   Y   N+F ++ E+RW YI  NAK+ +I+  ID A+ ++E++N SLKG LP +Y +
Sbjct  62   EDQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEY-A  120

Query  126  RLNMDVSKLAALLDTIN-NIDTLKDKQQDIVGRVYEYFLSKFALAEGKGKGEFYTPKSIV  184
            R  +D  KL+ ++D +  +++    ++QD++GRVYEYF++KFA AEGK  GEFYTP SIV
Sbjct  121  RPALDKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIV  180

Query  185  NLIAEMIEPYKGVIYDPACGSGGMFVQSMKFIQSHHGNTKDISIYGQEYTNTTYKLAKMN  244
            +L+ EMIEPYKG IYDP CGSGGMFVQS +F++ H+G   DI+IYGQE   TT KLAKMN
Sbjct  181  KLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMN  240

Query  245  LAIRGISANLGAVAADTFAKDQHPDLKADFIMANPPFNQKDWRASDELTDDPRWKGYDLP  304
            LAIRGI  +LG   ADTF +D H +LKAD+I+ANPPFN  DW + + L DD RW+ +++P
Sbjct  241  LAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDW-GQERLLDDYRWQ-FGIP  298

Query  305  PTSNANYAWILNMASKLSENGVAGFILANGALSGGG-EEYKIRKKLIENGVVEAVVILPR  363
            P +NANYAWI +M SKL+ NG AGF+LANG++S +G +E  IRK+LIE+++VE +V LP 
Sbjct  299  PKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPG  358

Query  364  SMFYTTDISVTLWILNNNKTERVVKHPDETRNYRNRKDEILFMDLREIGEPFEKKFTQFS  423
             +FY+T+I+V LW+++NNK +   K         +R +EILF+D REIG+   + + +FS
Sbjct  359  QLFYSTQIPVCLWFISNNKGQNGKK---------ERENEILFIDAREIGHMVSRTLKEFS  409

Query  424  EDHIKEIAGTYHTWQQKNSN-YKDIPEYCYSATLENVKSKDYSLVPSKYIEFVNRDENID  482
            +++I+ +A TYH+W+  N + Y DI+ +C  A LE+VK+++Y L P++Y+ + + +E+ +
Sbjct  410  DEDIQKVAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEE  469

Query  483  -FDDKMKSLQAEFTELLKAEESSKKDLMNVFKELGYGI  519
             F++KM  + +E++E +        ++ + +  LGYG+
Sbjct  470  PFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

281) Metok_1382 in NC_015636


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  416 bits (1565),  Expect = 2e-117, Method: Compositional matrix adjust.
 Identities = 260/523 (50%), Positives = 378/523 (73%), Gaps = 32/523 (6%)

Query  17   LWGSAEKLRGSVDPSRYKDIVLGIIFLKYASDMFEERRRELIDLSKNPKSDYYCETEDEL  76
            LW +A+KLRGS+D++ YK++ LG+IFLKY SD FEE+  EL       K D Y + ED+ 
Sbjct  13   LWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL-------KQDPYADEEDQ-  64

Query  77   IGLLEDNEEYISENVFYVPEQSRWDYLIKNAKNPNIAKLLDDAMILLEKHNSKLKGVLPK  136
                   +EY++EN+F VP ++RW+Y+  NAK+P+I++++D AMI +E++N  LKGVLPK
Sbjct  65   -------DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPK  117

Query  137  EYVRAEIPHEKLGALLDLFNNINYKEFIENKDESIGDVFGTIYGYFMRNFSQKLGQKGGE  196
            EY R+ +  EKLG ++DLF    +K  + + +    DV+G +Y YF+ +F+   G+++GE
Sbjct  118  EYARPALDKEKLGDIIDLFT---FK--VGDTESRKQDVLGRVYEYFIAKFASAEGKNAGE  172

Query  197  FFTPECIVKLLVELVEPLRGRIYDPACGSGGMFVQSSKFVKEYLKNGNGIDLAIYGQELN  256
            F+TP  IVKLLVE++EP +GRIYDP CGSGGMFVQS +FV     +G   D+AIYGQE N
Sbjct  173  FYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEK--HQGRLDDIAIYGQESN  230

Query  257  SSNVRICKMNLAIHRLSHD-QIKQGDTLSNDKHRDLKADYIITNPPFNYKDYDQKVLEGD  315
            ++  ++ KMNLAI+ + +D   +++DT+ ND H++LKADYI++NPPFN  D +Q  L +D
Sbjct  231  PTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDD  290

Query  316  VRFPYGIVPKKAENAKSGNANFLWIQHFIYHLSDNGIAAFIMANGSLSAggkegeirkki  375
             R  +GI PK       GNAN+ WI+H I  L+ NG A+F++ANGS+S++GK+    +K 
Sbjct  291  YRWQFGIPPK-------GNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKN  343

Query  376  ieegi-VDCIISLPNKMFYTTQIPACIWVIDKNKENGRFRSRKWETLFIDAREIYTPVAR  434
            + E   V+CI++LP ++FY+TQIP C+W I +NK +   + R  E LFIDAREI   V+R
Sbjct  344  LIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSR  403

Query  435  NQNEFSDEQIKKIADVYRCYRGEDGYPDYKDEKGFCKVATIDEIREQDYILTPGRYVGIA  494
              +EFSDE+I+K+A+ Y+  RG ++ P Y D  GFCKVA ++E+++++YILTPGRYVG+A
Sbjct  404  TLKEFSDEDIQKVAQTYHAWRGTNDKP-YEDIAGFCKVANLEEVKNNEYILTPGRYVGLA  462

Query  495  DVEEDSEPFEDKMERLTKELSEHFKKSRELEERIKNNLSELGF  537
            DVEED EPFE+KMER+T ELSE+F KS+ELE++I+++L  LG+
Sbjct  463  DVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGY  505

282) hsdM in NC_010612


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  414 bits (1557),  Expect = 6e-117, Method: Compositional matrix adjust.
 Identities = 232/501 (47%), Positives = 356/501 (72%), Gaps = 38/501 (7%)

Query  9    LKDTLWKGAEKLRGSIPASQYKDVILGLVFLKFVSDARDGR------KPFV---------  53
            + + LW++A+KLRGS+ A++YK+V LGL+FLK+VSD+ + +       P+          
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDEYL  68

Query  54   ------VPPEARWEALAGNAKSPDIGQLIDTAMLSVMTANPSLAATLPQLYHK--VDQRR  105
                  VP EARW+ + +NAK P+IGQ+ID AM+++   N SL + LP+ Y +  +D+ +
Sbjct  69   AENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALDKEK  128

Query  106  LGELVEVLGAARFSGRPSHRARDLMGEVYEYFLGNFARAEGRRGGEFFTPPSVVRVIVEI  165
            LG++++++      G    R +D++G VYEYF+++FA AEG+ +GEF+TP+S+V+++VE+
Sbjct  129  LGDIIDLFTFK--VGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEM  186

Query  166  LEPSSGRIYDPCCGSGGMFVQTERFICAHDGDPAQISIYGQESVEQTWRMAKMNLAVHGI  225
            +EP  GRIYDPCCGSGGMFVQ+ERF+  H+G   +I+IYGQES   TW++AKMNLA++GI
Sbjct  187  IEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRGI  246

Query  226  DDAGLGARWGDTFATDQHDGVPMDYVMANPPFNIKDWARDE--QDPRWRFGTPPAANANF  283
            D+ +LG R +DTF  D H G+  DY++ANPPFN  DW+++   +D RW+FG PP +NAN+
Sbjct  247  DN-DLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANY  305

Query  284  AWIQHILSKLAPTGQAGVVMANGSMSSKTNGEDRIRAGIIDADLVSCMVALPTQLFRSTG  343
            AWI+H++SKLAP G AG V+ANGSMS+  ++E  IR  +I+ DLV C+V+LP QLF ST 
Sbjct  306  AWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQ  365

Query  344  IPVCLWFFAKD-----KKARSGQVLFIDARGLGSMVDRCERTLTDDDVARIGDTYHGWFG  398
            IPVCLWF++++     KK R  ++LFIDAR +G MV R  + ++D+D+ ++++TYH+W G
Sbjct  366  IPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRG  425

Query  399  SASSVAKGTVYQDIPGFCRSASLDEIRAEGYVLTPGRYVGTGASCADGEPIGDKlarltt  458
            +     ++  Y+DI+GFC+ A+L+E++ + Y+LTPGRYVG +    D EP+ +K+ R+T+
Sbjct  426  T-----NDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITS  480

Query  459  qllaalDESTKLDEAVRAQLG  479
            +L   +  S  L++ +R  L 
Sbjct  481  ELSEQFAKSKELEDQIRKSLE  501

283) D650_9870 in NC_020833


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  413 bits (1555),  Expect = 1e-116, Method: Compositional matrix adjust.
 Identities = 245/545 (45%), Positives = 378/545 (70%), Gaps = 58/545 (10%)

Query  72   LDQTLWTAADKLRKNLDAANYKHIVLGFIFLKYISDSFTD-FQAKLKTQLTTPESELYLD  130
            +++ LW AADKLR ++DAA+YK++ LG+IFLKY+SDSF + ++               L 
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEE--------------LK  54

Query  131  PALFDEQEFSQILAEELEQRDYYAAENIFWVPEQARWDNIKSLSKLNLGDELPWGDKFKG  190
               + ++E          ++D Y AENIFWVP +ARW+ I+  +K               
Sbjct  55   QDPYADEE----------DQDEYLAENIFWVPKEARWQYINDNAKKP------------E  92

Query  191  VSRLIDDAFEAIERENPKLKGVLQRIAGFGVPD---EMLTGLIDLFSRTNFTQPMHNGEP  247
            ++++ID A  AIE EN  LKGVL +   ++ P    E L ++IDLF+         +   
Sbjct  93   IGQIIDKAMIAIENENESLKGVLPK--EYARPALDKEKLGDIIDLFT--------FKVGD  142

Query  248  VHLQAKDILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIVEMLEPYSGRIYDPAMGSG  307
             + + +D+LG+VYEYF+++FA AEGK++G+++TP SIV L+VEM+EPY GRIYDP  GSG
Sbjct  143  TESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSG  202

Query  308  GFFVQADRFIQAHAGNRNAISVYGQESNSTTRKLAVMNMAIRGIPFDFGDKPEDTLLNPL  367
            G FVQ++RF++ H G  + I++YGQESN+TT+KLA MN+AIRGI  D+G++  DT+ N L
Sbjct  203  GMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRGIDNDLGERNADTFHNDL  262

Query  368  HIDKKMDVVMANPPFNQKEWWNESLANDPRWAYGTPPQGNANFAWLQHMIYHLSPKGKMA  427
            H + K D ++ANPPFN  +W +E L +D RW +G PP+GNAN+AW++HMI  L+P+G  +
Sbjct  263  HKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAG  322

Query  428  LLLANGSMSSQTSGEGDIRKNIVQADLVEAMIALPNQLFTNTQIPACIWIINKAKARKG-  486
            ++LANGSMS+   +E +IRKN+++ DLVE +++LP QLF +TQIP C+W+I++ K+++G 
Sbjct  323  FVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGK  382

Query  487  -----EVLFINATQIGYLKDRVLRDFTADDIAKISDTYHNWQ--KQNGYENIPAFCYCAT  539
                 E+LFI+A +IG +  R L++F+ +DI K+++TYH W+  +++ YE+I++FC  A 
Sbjct  383  KERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRGTNDKPYEDIAGFCKVAN  442

Query  540  LDEIAKNDFVLTAGRYVGAVQEENDGVPFAEKMQELTALLNEQFKQGRELEQQIAENLKG  599
            L+E+ +N+++LT+GRYVG  + E+D  PF +KM+ +T+ L+EQF +++ELE+QI  +L G
Sbjct  443  LEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEG  502

Query  600  LGYGI  604
            LGYG+
Sbjct  503  LGYGV  507

284) Belba_2142 in NC_018010


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  413 bits (1556),  Expect = 8e-117, Method: Compositional matrix adjust.
 Identities = 242/513 (48%), Positives = 368/513 (72%), Gaps = 23/513 (4%)

Query  14   EVTLWEAANKLRGSVEPAEYKHVVLSLIFLKFASDKFEAHRAKLIAEGKEKYIEM--PAF  71
            E  LW+AA+KLRGS+++AEYK+V L+LIFLK+ SD FE     L    ++ Y +      
Sbjct  10   EEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL---KQDPYADEEDQDE  66

Query  72   YNQNNVFFLEESSRWNFLIKKSKQNDIALLIDTALHTIEKNNKSLKGALPDNYFSRLGLD  131
            Y  +N+F +   +RW+++  ++K+ +I+ +ID A+ +IE++N SLKG LP +Y +R +LD
Sbjct  67   YLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEY-ARPALD  125

Query  132  VTKLASLLDTIN-DIDTNKDPKQDLVGKVYEYFLSKFALAEGKGKGEFYTPKSIVNLIAE  190
              KL+ ++D +   ++     KQD++G+VYEYF++KFA AEGK  GEFYTP SIV+L+ E
Sbjct  126  KEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVE  185

Query  191  MIEPYKGIIYDPACGSGGMFVQSIKFIEAHHGNKKEISIYGQEYTNTTYKLAKMNLAIRG  250
            MIEPYKG IYDP CGSGGMFVQS +F+E H+G   +I+IYGQE   TT KLAKMNLAIRG
Sbjct  186  MIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRG  245

Query  251  ISGNLGEKAADTFGDDQHKDLKADFIMANPPFNQKDWRASNELTDDPRWMGYDVPPKSNA  310
            I  +LGE+ ADTF +D HK+LKAD+I+ANPPFN  DW + + L DD RW  +++PPK+NA
Sbjct  246  IDNDLGERNADTFHNDLHKGLKADYILANPPFNASDW-GQERLLDDYRWQ-FGIPPKGNA  303

Query  311  NYGWILNMVSKLSDNGIAGFILANGALSGGG-EEYKIRRKLIENNLVEAILVLPRNLFYT  369
            NY+WI +M+SKL+ NG AGF+LANG++S +G +E  IR++LIE++LVE I+ LP +LFY+
Sbjct  304  NYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYS  363

Query  370  TDISVTLWILNKNKKDQTRKIGDETRNYRDRENEILFMDLRQMGEPFEKKYTQFSDDDIQ  429
            T+I+V LW++++NK ++ +K         +RENEILF+D R++G+   +   +FSD+DIQ
Sbjct  364  TQIPVCLWFISNNKGQNGKK---------ERENEILFIDAREIGHMVSRTLKEFSDEDIQ  414

Query  430  KVVNTYHQWQVEE---IENVPEFCYAATLEEVEKKDFSLVPSKYIEFVNRDENID-FDDK  485
            KV +TYH W+  +    E+++ FC  A LEEV ++++ L P++Y+ + + +E+ + F++K
Sbjct  415  KVAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQK  474

Query  486  MNALKTEFTELLKAEAQSKNDLLTVFKELGYEI  518
            M+ + +E++E +    +  +++   +  LGY +
Sbjct  475  MERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

285) Geoth_2026 in NC_015660


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  412 bits (1552),  Expect = 2e-116, Method: Compositional matrix adjust.
 Identities = 241/520 (47%), Positives = 367/520 (71%), Gaps = 23/520 (4%)

Query  1    MTVKADIDFQKDLFEAANKMRGSVAPADYKHYVLPLIFLRYLSNKYEKRRKELEQIVKDP  60
            M + A I+F+  L +AA+K+RGS+ +A+YK+  L LIFL+Y+S+ +E +  EL Q   DP
Sbjct  1    MLLMATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQ---DP  57

Query  61   SSDWYTEDDEMRQIIITDPDQYKAENVFVVPEEASWSYIMKNAKQPNIKEILDNAMKRLE  120
                Y++++        D D+Y AEN+F VP EA W YI  NAK+P+I +I+D+AM  +E
Sbjct  58   ----YADEE--------DQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIE  105

Query  121  EENPELEGILPRIYQGSNLPPENVAGLIEIFSRDVFSANTDDSVDILGRTYEYFISSFAA  180
            +EN  L G+LP+ Y  + L  E+++++I++F+  V +       D+LGR YEYFI+ FA+
Sbjct  106  NENESLKGVLPKEYARPALDKEKLGDIIDLFTFKV-GDTESRKQDVLGRVYEYFIAKFAS  164

Query  181  SEGNRGGEFFTPSSIVKLLVAMLEPKSGIVFDPACGSGGMFIQSEEYAPNKHA----LSF  236
            +EG+ +GEF+TPSSIVKLLV M+EP  G ++DP CGSGGMF+QSE +  + ++    +++
Sbjct  165  AEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAI  224

Query  237  YGQENVVTTVRLGKMNVLLHGINAEI--RLGDSLLNDQFPDLKADYVIANPPFNQKDWGA  294
            YGQE+  TT +L+KMN+ ++GI+ ++  R +D++ ND   +LKADY++ANPPFN  DWG 
Sbjct  225  YGQESNPTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQ  284

Query  295  DRLSKNDPRLIGPVTNSNANYMWMQHFLYHLNDTGTAGFVMANGAMTTNVKEEKEVRQKL  354
            +RL  +  + +G   ++NANY W++H +  L   GTAGFV+ANG+M+T+ K+E E+R++L
Sbjct  285  ERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNL  344

Query  355  VDEGYIDCIVQLPEKLFFTTGIPCCLFFLSKNRDGKNGYRARKNEILFIDARKMGTLVSR  414
            ++++ ++CIV LP +LF++T IP CL F+S+N+ G+NG + R NEILFIDAR +G +VSR
Sbjct  345  IEQDLVECIVTLPGQLFYSTQIPVCLWFISNNK-GQNGKKERENEILFIDAREIGHMVSR  403

Query  415  KQKALSKEEIDKIAAVYRAYKYEGAEGYEDVVGFCKVATIDEVRANDYKLTPGIYVGTEV  474
              K +S E+I+K+A  Y+A +      YED+ GFCKVA ++EV+ N+Y LTPG YVG   
Sbjct  404  TLKEFSDEDIQKVAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLAD  463

Query  475  SDEDDIPFEEKMAELTQRLLEQFEESNRLQEKIKKDLEEL  514
             +ED+ PFE+KM  +T  L EQF  S+ L+++I+K LE L
Sbjct  464  VEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

286) GY4MC1_1947 in NC_014650


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  412 bits (1549),  Expect = 3e-116, Method: Compositional matrix adjust.
 Identities = 243/520 (47%), Positives = 368/520 (71%), Gaps = 23/520 (4%)

Query  1    MTVKADIDFQKDLFEAANKMRGSVAPADYKHYVLPLIFLRYLSNKYEKRRKELEQIVKDP  60
            M + A I+F+  L +AA+K+RGS+ +A+YK+  L LIFL+Y+S+ +E +  EL Q   DP
Sbjct  1    MLLMATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQ---DP  57

Query  61   SSDWYTEDDEMRQIIITDPDQYKAENVFVVPEEASWSYIMKNAKQPNIKEILDNAMKRLE  120
                Y++++        D D+Y AEN+F VP EA W YI  NAK+P+I +I+D+AM  +E
Sbjct  58   ----YADEE--------DQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIE  105

Query  121  EENPELEGILPRIYQGSNLPPENVAGLIEIFSRDVFSANTDDSVDILGRTYEYFISSFAA  180
            +EN  L G+LP+ Y  + L  E+++++I++F+  V +       D+LGR YEYFI+ FA+
Sbjct  106  NENESLKGVLPKEYARPALDKEKLGDIIDLFTFKV-GDTESRKQDVLGRVYEYFIAKFAS  164

Query  181  SEGNRGGEFFTPSSIVKLLVAMLEPKSGIVFDPACGSGGMFIQSEEYAPNKHA----LSF  236
            +EG+ +GEF+TPSSIVKLLV M+EP  G ++DP CGSGGMF+QSE +  + ++    +++
Sbjct  165  AEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAI  224

Query  237  YGQENVVTTVRLGKMNVLLHGINAEI--RLGDSLLNDQFPDLKADYVIANPPFNQKDWGA  294
            YGQE+  TT +L+KMN+ ++GI+ ++  R +D++ ND   +LKADY++ANPPFN  DWG 
Sbjct  225  YGQESNPTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQ  284

Query  295  DRLSKNDPRLIGPVTNSNANYMWMQHFLYHLNDTGTAGFVMANGAMTTNVKEEKEVRQKL  354
            +RL  +  + +G   ++NANY W++H +  L   GTAGFV+ANG+M+T+ K+E E+R++L
Sbjct  285  ERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNL  344

Query  355  VDEGYIDCIVQLPEKLFFTTGIPCCLFFLSKNRDGKNGYRARKNEILFIDARKMGTLVSR  414
            ++++ ++CIV LP +LF++T IP CL F+S+N+ G+NG + R NEILFIDAR +G +VSR
Sbjct  345  IEQDLVECIVTLPGQLFYSTQIPVCLWFISNNK-GQNGKKERENEILFIDAREIGHMVSR  403

Query  415  KQKALSKEEIDQIAAVYRAYKYDGAEKYEDIVGFCKVAKIEEVRANDYKLTPGIYVGTEV  474
              K +S E+I+++A  Y+A +      YEDI GFCKVA++EEV+ N+Y LTPG YVG   
Sbjct  404  TLKEFSDEDIQKVAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLAD  463

Query  475  SNEDDVPFEEKMAELTQRLLEQFEESNRLQEKIRKDLEEL  514
             +ED+ PFE+KM  +T  L EQF  S+ L+++IRK LE L
Sbjct  464  VEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

287) RBAM_007140 in NC_009725


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  411 bits (1548),  Expect = 4e-116, Method: Compositional matrix adjust.
 Identities = 253/514 (50%), Positives = 373/514 (73%), Gaps = 21/514 (4%)

Query  13   EETLWDSANKLRGSVEASEYKHVVLGLIFLKFASDKFEERKAELLDEGKEKYVDMVEF--  70
            EE LW++A+KLRGS++A+EYK+V LGLIFLK+ SD FEE+  EL ++    Y D  +   
Sbjct  10   EEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDP---YADEEDQDE  66

Query  71   YTMKNVFYLSETSRWSYLVENAKQEDIALKIDTALFTVEKNNPALKGALPDNYYSRLNLD  130
            Y   N+F ++  +RW Y+ +NAK+ +I+  ID A++++E++N +LKG LP +Y +R  LD
Sbjct  67   YLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEY-ARPALD  125

Query  131  VSKLASLidtin-nintikdkqqDIVGRIYEYFLSKFALAEGKGKGEFYTPKSIVNLIAE  189
              KL+ +ID +  ++     ++QD++GR+YEYF++KFA AEGK  GEFYTP SIV+L+ E
Sbjct  126  KEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVE  185

Query  190  MLEPYKGKIYDPACGSGGMFVQSVKFIESHQGNKKDISIYGQEYTTTTYKLAKMNLAIRG  249
            M+EPYKG+IYDP CGSGGMFVQS +F+E HQG   DI+IYGQE   TT KLAKMNLAIRG
Sbjct  186  MIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRG  245

Query  250  ISANLGETAADTFFNDQHKDLKADFIMANPPFNQKQWRAENELTDDPRWAGYEVPPRGNA  309
            I  +LGE  ADTF ND HK+LKAD+I+ANPPFN  +W +++ L DD RW  + +PP+GNA
Sbjct  246  IDNDLGERNADTFHNDLHKGLKADYILANPPFNASDW-GQERLLDDYRWQ-FGIPPKGNA  303

Query  310  NYAWILNIVSKLSENGVAGFLLANGALSGGG-DEYKIRKKLIENDLVESIIVLPQNMFYT  368
            NYAWI +++SKL+ NG AGF+LANG++S +G DE  IRK+LIE+DLVE I+ LP ++FY+
Sbjct  304  NYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYS  363

Query  369  TNISVTLWILNKNKKARTIDQNGSLKKYRNREKEVLFMDLREMGVPFEKKYTQFSEDDIT  428
            T+I+V LW++++NK     +QNG     ++RE+E+LF+D RE+G    +   +FS++DI 
Sbjct  364  TQIPVCLWFISNNK-----GQNGK----KERENEILFIDAREIGHMVSRTLKEFSDEDIQ  414

Query  429  KVTNIYHNWQQTDYETKYQNIPEFSYSATFEEVVNKDFSLVPSKYIEFANRDEDID-FDE  487
            KV++ YH W+ T+ +  Y++I+ F   A +EEV N+++ L P++Y+ +A+ +ED + F++
Sbjct  415  KVAQTYHAWRGTN-DKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQ  473

Query  488  KMKLIQSEFVDLLKAEEDSKKDLLKVFKELGYEI  521
            KM  I SE+ + +    +   ++ K +  LGY +
Sbjct  474  KMERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

288) hsdM in NC_020133


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  411 bits (1547),  Expect = 4e-116, Method: Compositional matrix adjust.
 Identities = 230/501 (46%), Positives = 356/501 (72%), Gaps = 38/501 (7%)

Query  9    LKDTLWKGAEKLRGSIPASQYKDVILGLVFLKFVSDARDGR------KPFV---------  53
            + + LW++A+KLRGS+ A++YK+V LGL+FLK+VSD+ + +       P+          
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDEYL  68

Query  54   ------VPPEARWEALAGNAKSPDIGQLIDTAMLSVMTANPSLAATLPQLYHK--VDQRR  105
                  VP EARW+ + +NAK P+IGQ+ID AM+++   N SL + LP+ Y +  +D+ +
Sbjct  69   AENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALDKEK  128

Query  106  LGELVEVLGAARFSGRPSHRARDLMGEVYEYFLGNFARAEGRRGGEFFTPPSVVRVIVEI  165
            LG++++++      G    R +D++G VYEYF+++FA AEG+ +GEF+TP+S+V+++VE+
Sbjct  129  LGDIIDLFTFK--VGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEM  186

Query  166  LEPSSGRIYDPCCGSGGMFVQTERFICAHDGDPAQISIYGQESVEQTWRMAKLNLAVHGI  225
            +EP  GRIYDPCCGSGGMFVQ+ERF+  H+G   +I+IYGQES   TW++AK+NLA++GI
Sbjct  187  IEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRGI  246

Query  226  DDAGLGARWGDTFATDQHDGVPMDYVMANPPFNIKDWARDE--QDPRWRFGTPPAANANF  283
            D+ +LG R +DTF  D H G+  DY++ANPPFN  DW+++   +D RW+FG PP +NAN+
Sbjct  247  DN-DLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANY  305

Query  284  AWIQHILSKLAPTGQAGVVMANGSMSSKTNGEDRIRAGIIDADLVSCMVALPTQLFRSTG  343
            AWI+H++SKLAP G AG V+ANGSMS+  ++E  IR  +I+ DLV C+V+LP QLF ST 
Sbjct  306  AWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQ  365

Query  344  IPVCLWFFAKD-----KKARSGQVLFIDARGLGSMLDRCERTLTDDDVARIGDTYHGWFG  398
            IPVCLWF++++     KK R  ++LFIDAR +G M+ R  + ++D+D+ ++++TYH+W G
Sbjct  366  IPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRG  425

Query  399  SASAVAKGAVYQDIPGFCRSASLDEIRAEGYVLTPGRYVGTGASCADGEPIGDKltrltt  458
            +     ++  Y+DI+GFC+ A+L+E++ + Y+LTPGRYVG +    D EP+ +K+ R+T+
Sbjct  426  T-----NDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITS  480

Query  459  qllaalDESTKLDEAVRAQLG  479
            +L   +  S  L++ +R  L 
Sbjct  481  ELSEQFAKSKELEDQIRKSLE  501

289) Fphi_0190 in NC_010336


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  410 bits (1542),  Expect = 1e-115, Method: Compositional matrix adjust.
 Identities = 249/524 (48%), Positives = 375/524 (72%), Gaps = 24/524 (4%)

Query  9    NTKSMEETLWDSANKLRGSVESSEYKHIVLGLIFLKFVSDTFEERREQLIAEGKEAFIDM  68
             T + EE LW++A+KLRGS++++EYK++ LGLIFLK+VSD+FEE+ E+L  +      D 
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ  64

Query  69   VEFYTMENVFYLPEESRWSYIKQNAKQDDIALKIDTALSTIEKNNPSLKGALPDNYFSRL  128
             E Y  EN+F +P E+RW YI++NAK+ +I+  ID A+ +IE++N SLKG LP +Y +R 
Sbjct  65   DE-YLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEY-ARP  122

Query  129  GLDVSKLSSLIDtinnintiAD-KGNDIVGRVYEYFLSKFAIAEGKGKGEFYTPKSIVNL  187
            +LD  KL+ +ID +      ++ + +D++GRVYEYF++KFA AEGK  GEFYTP SIV+L
Sbjct  123  ALDKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKL  182

Query  188  IANMIEPYKGKIYDPACGSGGMFVQSIKFIEAHKGNKKDISIYGQEYTGTTYKLAKMNLA  247
            + +MIEPYKG+IYDP CGSGGMFVQS +F+E H+G   DI+IYGQE   TT KLAKMNLA
Sbjct  183  LVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLA  242

Query  248  ICGISANLGDVPADTFFKDQHPDLKADFIMANPPFNQKDWRGVNELLDDPRWAGYDVPPK  307
            I GI  +LG+  ADTF +D H +LKAD+I+ANPPFN  DW G + LLDD RW  +++PPK
Sbjct  243  IRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDW-GQERLLDDYRWQ-FGIPPK  300

Query  308  SNANYGWILNIVSKLSQNGVAGFILANGALSGGG-EEYKIRKKLIENDLVEAILILPQNM  366
            +NANY+WI +++SKL+ NG AGF+LANG++S +G +E  IRK+LIE+DLVE I+ LP ++
Sbjct  301  GNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQL  360

Query  367  FYTTNISVTIWILNANKKQREFEQNGKQKNHRDRTKEILFMDLRQKGVPFEKKFIQFDEK  426
            FY+T+I+V +W+++ NK      QNGK    ++R +EILF+D R+ G    + + +F + 
Sbjct  361  FYSTQIPVCLWFISNNK-----GQNGK----KERENEILFIDAREIGHMVSRTLKEFSDE  411

Query  427  NIQEISNTYHTWQSIGGHSKIDSESQGYKDIPEYCKSVTLDEVIAKDYSLVPSKYIEFVN  486
            +IQ +++TYH+W++        ++ + Y DI+ +CK   L+EV  ++Y L P++Y+ + +
Sbjct  412  DIQKVAQTYHAWRG--------TNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLAD  463

Query  487  RDENID-FDEKMKNLQTEFRellkqeeqskkellkVFKELGYEI  529
             +E+ + F++KM  + +E+ E + +  +   ++ K +  LGY +
Sbjct  464  VEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

290) RTO_30870 in NC_021015


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  410 bits (1542),  Expect = 1e-115, Method: Compositional matrix adjust.
 Identities = 247/517 (48%), Positives = 365/517 (71%), Gaps = 22/517 (4%)

Query  11   ISMEEALWKSADKLRGSVEPAEYKHVVLSLFFLKFASDKFEECRNKIIATHGEKYADMKP  70
            I+ EE LW++ADKLRGS+++AEYK+V L+L+FLK+ SD FEE   K      + YAD   
Sbjct  7    IGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEE---KYEELKQDPYADEED  63

Query  71   F--YTQENVFYLPEESRWKYIIENAKQDDIALKIDTALYTIEKNNPALKGALPDNYYSRL  128
               Y  EN+F +P E+RW+YI +NAK+ +I+  ID A+ +IE++N +LKG LP +Y +R 
Sbjct  64   QDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEY-ARP  122

Query  129  HIDTAKLASLLD--EINRINTDDKENDIIGRVYEYFLSKFALAEGKGKGEFYTPKCIVNL  186
             +D  KL+ ++D   ++  +T+ + +D++GRVYEYF++KFA AEGK  GEFYTP  IV+L
Sbjct  123  ALDKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKL  182

Query  187  IAEMLEPYDGILYDPCCGSGGMFVQSIKFVEAHSGNKKKVSIYGQEYTNTTFKLAKMNLA  246
            + EM+EPY G +YDPCCGSGGMFVQS +FVE H G    ++IYGQE   TT KLAKMNLA
Sbjct  183  LVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLA  242

Query  247  IRGISANLGEMAANTFTNDQHKDLKADFIMANPPFNQKQWRAENELVDDPRWNGYEVPPT  306
            IRGI  +LGE  A+TF ND HK+LKAD+I+ANPPFN  +W +++ L+DD RW+ + +PP 
Sbjct  243  IRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDW-GQERLLDDYRWQ-FGIPPK  300

Query  307  SNANYGWILNIVSKLSRNGVAGFLLANGALSDDGT-ELKIRQQLIENHLVEAIIILPRNL  365
            +NANY+WI +++SKL+ NG AGF+LANG++S  G  EL IR++LIE++LVE I+ LP +L
Sbjct  301  GNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQL  360

Query  366  FYTTDISVTLWVLNKNKKARVVEQNGKLKRYRDREDEILFMDLRQMGSPYEKKYIELTEE  425
            FY+T+I+V LW +++NK      QNGK    ++RE+EILF+D R++G    +   E+++E
Sbjct  361  FYSTQIPVCLWFISNNK-----GQNGK----KERENEILFIDAREIGHMVSRTLKEFSDE  411

Query  426  DRAKVTSVYHNWQQEGYEETYENVPEFCYSASFEEVKEKGFTLVPSRYIEFVNRDENID-  484
            D  KV+  YH W+    +  YE+++ FC  A++EEVK++ + L P+RY+ + + +E+ + 
Sbjct  412  DIQKVAQTYHAWRGTN-DKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEP  470

Query  485  FDTKMKSLQGELKELLVQEEKSKSDLLAVFKELGYEI  521
            F+ KM  + +EL E + +      ++   +  LGY +
Sbjct  471  FEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

291) Belba_0101 in NC_018010


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  409 bits (1539),  Expect = 2e-115, Method: Compositional matrix adjust.
 Identities = 248/518 (48%), Positives = 368/518 (72%), Gaps = 23/518 (4%)

Query  10   AIEETLWQSCDKLRGSVEPAEYKHVVLGLIFLKFASDKFEQRRKELIAEGKEKYVEMKDF  69
            ++EE LWQ+ DKLRGS+++AEYK+V LGLIFLK+ SD FE++  EL    ++ Y +  D 
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL---KQDPYADEEDQ  64

Query  70   --YAMKNVFYLEEISRWSYIIKNAKQNDISLKIDTALNTIEKNNPALKGALPDNYFSRLA  127
              Y   N+F +   +RW YI  NAK+ +I+  ID A+ +IE++N +LKG LP +Y +R A
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEY-ARPA  123

Query  128  LDKTKLASLLDTIN-DIDTLKDNGQDVIGRVYEYFLGKFALKESSGKGKGEFYTPKTIVN  186
            LDK KL+ ++D +   ++      QDV+GRVYEYF++KFA   + GK  GEFYTP +IV+
Sbjct  124  LDKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFA--SAEGKNAGEFYTPSSIVK  181

Query  187  LMAELIEPYKGIIYDPCCGTGGMFVQSIKFIEAHQGSKKEVSIYGQENTPTTYKLAKMNL  246
            L+ E+IEPYKG IYDPCCG+GGMFVQS +F+E HQG   +++IYGQE+ PTT KLAKMNL
Sbjct  182  LLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNL  241

Query  247  AIRGIAANLGDKHADTFSNDQHKDLKADYIMANPPFNLKDWRGENELLDDPRWMGYEVPP  306
            AIRGI  +LG+++ADTF ND HK+LKADYI+ANPPFN  DW G++ LLDD RW  + +PP
Sbjct  242  AIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDW-GQERLLDDYRWQ-FGIPP  299

Query  307  KSNANYGWILNMVSKLSENGVAGFILANGALSGSG-EEYKIRRKLIENDLVEAIIIIPRN  365
            K+NANY+WI +M+SKL+ NG AGF+LANG++S SG +E  IR++LIE+DLVE I+ +P +
Sbjct  300  KGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQ  359

Query  366  TFYTTDISVTLWILNKNKNQRTDNTKEKPKNYRDRTGEILFMDLRRWGSEYEKKYIELTE  425
             FY+T+I+V LW++++NK Q            ++R  EILF+D R  G    +   E+++
Sbjct  360  LFYSTQIPVCLWFISNNKGQNGK---------KERENEILFIDAREIGHMVSRTLKEFSD  410

Query  426  DDIQQVALNFHNWQQADYETTYKDIPEYCKSASFEDLEANDFSLVPSKYIEFVDKDSGID  485
            +DIQ+VA  +H W+ ++ +  Y DI+ +CK A++E++  N++ L P++Y+ + D + + +
Sbjct  411  EDIQKVAQTYHAWRGTN-DKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEE  469

Query  486  -FDTEMKRIQQDFKTllqeekesqeqlINAFKTLGYSL  522
             F+  M RI  ++   +   KE ++Q+ +++  LGY++
Sbjct  470  PFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

292) M493_07015 in NC_022080


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  409 bits (1539),  Expect = 2e-115, Method: Compositional matrix adjust.
 Identities = 241/520 (47%), Positives = 368/520 (71%), Gaps = 23/520 (4%)

Query  1    MTVKADIDFQKDLFEAANKMRGSVAPADYKHYVLPLIFLRYLSNKYEKRRKELEQIVKDP  60
            M + A I+F+  L +AA+K+RGS+ +A+YK+  L LIFL+Y+S+ +E +  EL Q   DP
Sbjct  1    MLLMATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQ---DP  57

Query  61   KSDWYTEDDEMRQIIITDPDQYKAENVFVVPEEASWSYIMKNAKQPNIKEILDNAMKRLE  120
                Y++++        D D+Y AEN+F VP EA W YI  NAK+P+I +I+D+AM  +E
Sbjct  58   ----YADEE--------DQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIE  105

Query  121  EENPELEGILPRIYQGSNLPPENVAGLIEIFSRDVFSANTDDSVDILGRTYEYFISSFAA  180
            +EN  L G+LP+ Y  + L  E+++++I++F+  V +       D+LGR YEYFI+ FA+
Sbjct  106  NENESLKGVLPKEYARPALDKEKLGDIIDLFTFKV-GDTESRKQDVLGRVYEYFIAKFAS  164

Query  181  SEGNRGGEFFTPSSIVKLLVAMLEPKSGIVFDPACGSGGMFIQSEEYAPNKHA----LSF  236
            +EG+ +GEF+TPSSIVKLLV M+EP  G ++DP CGSGGMF+QSE +  + ++    +++
Sbjct  165  AEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAI  224

Query  237  YGQENVVTTVRLGKMNVLLHGINAEI--RLGDSLLNDQFPDLKADYVIANPPFNQKDWGA  294
            YGQE+  TT +L+KMN+ ++GI+ ++  R +D++ ND   +LKADY++ANPPFN  DWG 
Sbjct  225  YGQESNPTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQ  284

Query  295  DRLSKNDPRLIGPVTNSNANYMWMQHFLYHLNDTGTAGFVMANGAMTTNVKEEKEVRQKL  354
            +RL  +  + +G   ++NANY W++H +  L   GTAGFV+ANG+M+T+ K+E E+R++L
Sbjct  285  ERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNL  344

Query  355  VDEGYIDCIVQLPEKLFFTTGIPCCLFFLSKNRDGKNGYRARKNEILFIDARKMGTLVSR  414
            ++++ ++CIV LP +LF++T IP CL F+S+N+ G+NG + R NEILFIDAR +G +VSR
Sbjct  345  IEQDLVECIVTLPGQLFYSTQIPVCLWFISNNK-GQNGKKERENEILFIDAREIGHMVSR  403

Query  415  KQKALSKEEIDQIAAVYRAYKYEGAERYEDIAGFCKVATIDEVRANDYKLTPGIYVGTEV  474
              K +S E+I+++A  Y+A +      YEDIAGFCKVA ++EV+ N+Y LTPG YVG   
Sbjct  404  TLKEFSDEDIQKVAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLAD  463

Query  475  SNEDDVPFEEKMAELTQRLLEQFEESNCLQEKIKRDLEEL  514
             +ED+ PFE+KM  +T  L EQF  S+ L+++I++ LE L
Sbjct  464  VEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

293) LBU_1048 in NC_017469


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  408 bits (1535),  Expect = 2e-115, Method: Compositional matrix adjust.
 Identities = 230/362 (64%), Positives = 305/362 (85%), Gaps = 3/362 (0%)

Query  8    LNFEDKLWKAADALRGNMDASEYRNVVLGLIFLKYVSDAFEEKHQELLKSDFPedaedrd  67
            + FE+KLW+AAD LRG+MDA+EY+NV LGLIFLKYVSD+FEEK +EL +  ++++ ++ +
Sbjct  7    IGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDE  66

Query  68   ayeaeNIFWIPKQARWENIAGASKTQQIGEVIDQAMEAIEKENPSIQGILSKNYESPDLD  127
                 NIFW+PK+ARW+ I + +K  +IG++ID+AM AIE+EN S++G+L+K+Y  P LD
Sbjct  67   YLAE-NIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALD  125

Query  128  KSRLGKVVDLISDIDVGSKESQDRDVLGRVYEYFLQQFASAEGRGGGEFYTPRSIVKTLV  187
            K +LG ++DL++ + VG  ES+ +DVLGRVYEYF+ +FASAEG+ +GEFYTP SIVK LV
Sbjct  126  KEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLV  184

Query  188  EMIEPYKGRVYDPCCGSGGMFVQSEEFVKEHQGRIDDLAVYGEESNPTTWKLAKMNLAIR  247
            EMIEPYKGR+YDPCCGSGGMFVQSE FV  HQGR+DD+A+YG+ESNPTTWKLAKMNLAIR
Sbjct  185  EMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIR  244

Query  248  GIDNDLGPHQGDTFANDMHKGTHFDYILANPPFNIKDWGGEKLKDDARWKYGVPPESNAN  307
            GIDNDLG +++DTF ND+HKG   DYILANPPFN  DWG E+L DD RW++G+PP +NAN
Sbjct  245  GIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNAN  304

Query  308  YAWMEHIISKLQPDGKAGFVLANGALSTSRKEELAIRKAVLEDDKIDAIVALPGANVLFN  367
            YAW+EH+ISKL P+G AGFVLANG++STS K+EL IRK ++E+D ++ IV+LPG +++++
Sbjct  305  YAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPG-QLFYS  363

Query  368  TD  369
            T+
Sbjct  364  TQ  365

294) EUS_01180 in NC_021011


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  408 bits (1534),  Expect = 4e-115, Method: Compositional matrix adjust.
 Identities = 239/513 (47%), Positives = 361/513 (71%), Gaps = 20/513 (3%)

Query  2    EEALWKSADKLRGSVEPAEYKHVVLSLFFLKFAGDKFDAQ-REMIAKQYGEKFVDTVAFY  60
            EE LW++ADKLRGS+++AEYK+V L+L+FLK+ +D F+ +  E+    Y++   +    Y
Sbjct  10   EEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADE--EDQDEY  67

Query  61   TKDNVFYLPPESRWSYIMENAKQDDIALKIDTALYTIEKNNPALKGALPDNYYSRLQLDT  120
              +N+F +P E+RW YI +NAK+ +I+  ID A+ +IE++N +LKG LP +Y +R  LD 
Sbjct  68   LAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEY-ARPALDK  126

Query  121  AKLASLLD--EINRINTDDKENDIIGRIYEYFLSKFALAEGKGKGEFYTPKCIVNLIAEM  178
             KL+ ++D   ++  +T+ + +D++GR+YEYF++KFA AEGK  GEFYTP  IV+L+ EM
Sbjct  127  EKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEM  186

Query  179  LEPYDGILYDPCCGSGGMFVQSMKFVEAHHGNKKQVSIYGQEYTNTTYKLCKMNLAIRGI  238
            +EPY G +YDPCCGSGGMFVQS +FVE H+G   +++IYGQE   TT KL KMNLAIRGI
Sbjct  187  IEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRGI  246

Query  239  SANLGETAANTFTNDQHKDLKADYIMANPPFNQKAWRAENELIDDPRWDGYEVPPTSNAN  298
              +LGE  A+TF ND HK+LKADYI+ANPPFN   W +++ L+DD RW+ + +PP +NAN
Sbjct  247  DNDLGERNADTFHNDLHKGLKADYILANPPFNASDW-GQERLLDDYRWQ-FGIPPKGNAN  304

Query  299  YGWILNIVSKLSQNGVAGFLLANGALSDDGT-ELKIRKQLIENNLVEAIIILPRNLFYTT  357
            Y+WI +++SKL+ NG AGF+LANG++S  G  EL IRK+LIE++LVE I+ LP +LFY+T
Sbjct  305  YAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYST  364

Query  358  DISVTLWILNKNKKARVVEQNGQLKRYRDREREILFMDLRQMGGPYEKKYIELTDKDRAK  417
            +I+V LW++++NK      QNG+    ++RE EILF+D R++G    +   E++D D  K
Sbjct  365  QIPVCLWFISNNK-----GQNGK----KERENEILFIDAREIGHMVSRTLKEFSDEDIQK  415

Query  418  VTSVYHNWQQEGYEETYENIPEFCYSASFVEVAEKGFTLVPSRYIEFVNRDENID-FDAK  476
            V+  YH W+    +  YE+I+ FC  A++ EV ++ + L P+RY+ + + +E+ + F+ K
Sbjct  416  VAQTYHAWRGTN-DKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQK  474

Query  477  MKTLQAELKELLVQEEQSKADLLAVFKELGYEI  509
            M  + +EL E + +  +   ++   +  LGY +
Sbjct  475  MERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

295) F382_03170 in NC_021743


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  408 bits (1536),  Expect = 4e-115, Method: Compositional matrix adjust.
 Identities = 245/545 (45%), Positives = 378/545 (70%), Gaps = 58/545 (10%)

Query  101  LDQTLWTAADKLRKNLDAANYKHIVLGFIFLKYISDSFTD-FQAKLKTQLTTPESELYLD  159
            +++ LW AADKLR ++DAA+YK++ LG+IFLKY+SDSF + ++               L 
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEE--------------LK  54

Query  160  PALFDEQEFSQILAEELEQRDYYAAENIFWVPEQARWDNIKSLSKLNLGDELPWGDKFKG  219
               + ++E          ++D Y AENIFWVP +ARW+ I+  +K               
Sbjct  55   QDPYADEE----------DQDEYLAENIFWVPKEARWQYINDNAKKP------------E  92

Query  220  VSRLIDDAFEAIERENPKLKGVLQRIAGFGVPD---EMLTGLIDLFSRTNFTQPMHNGEP  276
            ++++ID A  AIE EN  LKGVL +   ++ P    E L ++IDLF+         +   
Sbjct  93   IGQIIDKAMIAIENENESLKGVLPK--EYARPALDKEKLGDIIDLFT--------FKVGD  142

Query  277  VHLQAKDILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIVEMLEPYSGRIYDPAMGSG  336
             + + +D+LG+VYEYF+++FA AEGK++G+++TP SIV L+VEM+EPY GRIYDP  GSG
Sbjct  143  TESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSG  202

Query  337  GFFVQADRFIQAHAGNRNAISVYGQESNSTTRKLAVMNMAIRGIPFDFGDKPEDTLLNPL  396
            G FVQ++RF++ H G  + I++YGQESN+TT+KLA MN+AIRGI  D+G++  DT+ N L
Sbjct  203  GMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRGIDNDLGERNADTFHNDL  262

Query  397  HIDKKMDVVMANPPFNQKEWWNESLANDPRWAYGTPPQGNANFAWLQHMIYHLSPKGKMA  456
            H + K D ++ANPPFN  +W +E L +D RW +G PP+GNAN+AW++HMI  L+P+G  +
Sbjct  263  HKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAG  322

Query  457  LLLANGSMSSQTSGEGDIRKNIVQADLVEAMIALPNQLFTNTQIPACIWIINKAKARKG-  515
            ++LANGSMS+   +E +IRKN+++ DLVE +++LP QLF +TQIP C+W+I++ K+++G 
Sbjct  323  FVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGK  382

Query  516  -----EVLFINATQIGYLKDRVLRDFTADDIAKISDTYHNWQ--KQNGYENIPAFCYCAT  568
                 E+LFI+A +IG +  R L++F+ +DI K+++TYH W+  +++ YE+I++FC  A 
Sbjct  383  KERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRGTNDKPYEDIAGFCKVAN  442

Query  569  LDEIAKNDFVLTAGRYVGAVQEENDGVPFAEKMQELTALLNEQFKQGRELEQQIAENLKG  628
            L+E+ +N+++LT+GRYVG  + E+D  PF +KM+ +T+ L+EQF +++ELE+QI  +L G
Sbjct  443  LEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEG  502

Query  629  LGYGI  633
            LGYG+
Sbjct  503  LGYGV  507

296) Dacet_2667 in NC_013943


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  407 bits (1532),  Expect = 6e-115, Method: Compositional matrix adjust.
 Identities = 231/512 (46%), Positives = 364/512 (72%), Gaps = 17/512 (3%)

Query  11   EEILWDSANKLRGSVEPSEYKHVVLSLIFLKFASDKFEERKKELIAEGKEKYTDMVEFYT  70
            EE LW++A+KLRGS++++EYK+V L+LIFLK+ SD FEE+  EL  +      D  E Y 
Sbjct  10   EEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDE-YL  68

Query  71   MRNVFYLPEESRWSHIKKNSKQSNIALIVDTALSTVEKNNAALKGALPDNYFSRLGLETS  130
              N+F +P E+RW  I+ N+K+++I+ I+D A+ ++E++N +LKG LP +Y +R +L+  
Sbjct  69   AENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEY-ARPALDKE  127

Query  131  KLAALIDTIS-NIDTLKDKERDIVGKVYEYFLSKFALAEGKGKGEFYTPKSIVNLIAEMI  189
            KL+ +ID ++ +++    + +D++G+VYEYF++KFA AEGK  GEFYTP SIV+L+ EMI
Sbjct  128  KLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMI  187

Query  190  EPYKGKIYDPCCGSGGMFVQSMKFIDAHKGNRKDVSIYGQELTAATYKLAKMNLAIRGIS  249
            EPYKG+IYDPCCGSGGMFVQS +F++ H+G   D++IYGQE  ++T KLAKMNLAIRGI 
Sbjct  188  EPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRGID  247

Query  250  ANLGEIGKDTFLNDQFPDLKADYIMANPPFNQKDWRAGTELTSDPRWNGYETPPVGNANY  309
             +LGE   DTF ND   +LKADYI+ANPPFN  DW +   L  D RW+ +  PP GNANY
Sbjct  248  NDLGERNADTFHNDLHKGLKADYILANPPFNASDW-GQERLLDDYRWQ-FGIPPKGNANY  305

Query  310  GWILHMVSKLSENGVAGFILANGALSGGG-DEYKIRKKIIENNLVEAIIILPQNMFYTTN  368
            +WI HM+SKL+ NG AGF+LANG++S +G DE  IRK++IE++LVE I+ LP ++FY+T+
Sbjct  306  AWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQ  365

Query  369  ISVTLWIINKNKKERVVNIPDSTREYRSREKEVLFMDLRQEGEPFEKKYIQFHEDHIKRF  428
            I+V LW+I++NK +            + RE+E+LF+D R+ G+   +   +F +++I++ 
Sbjct  366  IPVCLWFISNNKGQNGK---------KERENEILFIDAREIGHMVSRTLKEFSDEDIQKV  416

Query  429  ARTFHTWQTKQFHDEFDNVPEYCYSATFDEIKAKDFSLVPSKYIEFVNRDEDID-FDEKM  487
            A+T+H+W+  + +  +++++ +C  A ++E+K +++ L P++Y+ + + +ED + F++KM
Sbjct  417  AQTYHAWRGTN-DKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKM  475

Query  488  RSLKDDFTELLKGEEKSKAELLKVFKELGYEI  519
              +  +++E +        ++ K +  LGY +
Sbjct  476  ERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

297) hsdM1 in NC_021251


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  406 bits (1527),  Expect = 1e-114, Method: Compositional matrix adjust.
 Identities = 241/501 (49%), Positives = 362/501 (73%), Gaps = 31/501 (6%)

Query  1    MILGLVFLKYVSDAYDerreairaelaaeGMEESQIEDLIDDPEQYQGYGVFVVPVSARW  60
            + LGL+FLKYVSD+++E+ E          + +    D  +D ++Y +  +F VP  ARW
Sbjct  32   VALGLIFLKYVSDSFEEKYE---------ELKQDPYAD-EEDQDEYLAENIFWVPKEARW  81

Query  61   KFLAENTKGKPAVGGEPAKNIGQLIDEAMDAVMKANPTLGGTLPRLYNKDNIDQRRLGEL  120
            +++ +N+K KP        +IGQ+ID AM A+ + N +L G LP+ Y +  +D+ +LG++
Sbjct  82   QYINDNAK-KP--------EIGQIIDKAMIAIENENESLKGVLPKEYARPALDKEKLGDI  132

Query  121  IDLFNSARFSRQGEHRARDLMGEVYEYFLGNFARAEGKRGGEFFTPPSVVKVIVEVLEPS  180
            IDLF       + E R +D++G VYEYF+++FA AEGK +GEF+TP+S+VK++VE++EP 
Sbjct  133  IDLFTFK--VGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPY  190

Query  181  SGRVYDPCCGSGGMFVQTEKFIYEHDGDPKDVSIYGQESIEETWRMAKMNLAIHGIDNKG  240
             GR+YDPCCGSGGMFVQ+E+F+  H+G   D++IYGQES   TW++AKMNLAI+GIDN +
Sbjct  191  KGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRGIDN-D  249

Query  241  LGARWSDTFARDQHPDVQMDYVMANPPFNIKDWARNE--EDPRWRFGVPPANNANYAWIQ  298
            LG R +DTF  D H +++ DY++ANPPFN  DW+++   +D RW+FG+PP  NANYAWI+
Sbjct  250  LGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAWIE  309

Query  299  HILYKLAPGGRAGVVMAngsmssnsngegDIRAQIVEADLVSCMVALPTQLFRSTGIPVC  358
            H++ KLAP G AG V+ANGSMS+++++E +IR +++E DLV C+V+LP QLF ST IPVC
Sbjct  310  HMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVC  369

Query  359  LWFFAKDKAAGKQGSIDRCGQVLFIDARELGDLVDRAERALTNEEIVRIGDTFHAWRGSK  418
            LWF++++K  G++G  +R  ++LFIDARE+G++V R+ + +++E+I ++++T+HAWRG++
Sbjct  370  LWFISNNK--GQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRGTN  427

Query  419  SAAVKGIMYEDVPGFCKSATLAEIKATDYALTPGRYVGTPAVEDDGEPIDEKMARLSKAL  478
              +     YED++GFCK A L E+K  +Y LTPGRYVG + VE+D EP+++KM R++  L
Sbjct  428  DKP-----YEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSEL  482

Query  479  LEAFDESARLERVVREQLGRL  499
             E F  S  LE  +R  L  L
Sbjct  483  SEQFAKSKELEDQIRKSLEGL  503

298) GK1380 in NC_006510


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  406 bits (1528),  Expect = 1e-114, Method: Compositional matrix adjust.
 Identities = 239/508 (48%), Positives = 363/508 (72%), Gaps = 23/508 (4%)

Query  1    MFEAANKMRGSVAPADYKHYVLPLIFLRYLSNKYEQRRKELEQIVKDPGSDWYTEDDEMR  60
            + +AA+K+RGS+ +A+YK+  L LIFL+Y+S+ +E++  EL Q   DP    Y++++   
Sbjct  13   LWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQ---DP----YADEE---  62

Query  61   QIIITDPDQYKAENVFVVPEEASWSYIMKNAKQPNIKEILDNAMKRLEEENPELEGILPR  120
                 D D+Y AEN+F VP EA W YI  NAK+P+I +I+D+AM  +E+EN  L G+LP+
Sbjct  63   -----DQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPK  117

Query  121  IYQGSNLPPENVAGLIEIFSRDVFSANTDDSVDILGRTYEYFISSFAASEGNRGGEFFTP  180
             Y  + L  E+++++I++F+  V +       D+LGR YEYFI+ FA++EG+ +GEF+TP
Sbjct  118  EYARPALDKEKLGDIIDLFTFKV-GDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTP  176

Query  181  SSIVKLLVAMLEPKSGIVFDPACGSGGMFIQSEEYAPNKHA----LSFYGQENVVTTVRL  236
            SSIVKLLV M+EP  G ++DP CGSGGMF+QSE +  + ++    +++YGQE+  TT +L
Sbjct  177  SSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKL  236

Query  237  GKMNVLLHGINAEI--RLGDSLLNDQFPDLKADYVIANPPFNQKDWGADRLSKNDPRLIG  294
            +KMN+ ++GI+ ++  R +D++ ND   +LKADY++ANPPFN  DWG +RL  +  + +G
Sbjct  237  AKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYRWQFG  296

Query  295  PVTNSNANYMWMQHFLYHLNDTGTAGFVMANGAMTTNVKEEKEVRQKLVDEGYIDCIVQL  354
               ++NANY W++H +  L   GTAGFV+ANG+M+T+ K+E E+R++L++++ ++CIV L
Sbjct  297  IPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTL  356

Query  355  PEKLFFTTGIPCCLFFLSKNRDGKNGYRARKNEILFIDARKMGTLVSRKQKALSKEEIDK  414
            P +LF++T IP CL F+S+N+ G+NG + R NEILFIDAR +G +VSR  K +S E+I+K
Sbjct  357  PGQLFYSTQIPVCLWFISNNK-GQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQK  415

Query  415  IAAVYRAYKYDGAEGYEDIAGFCKVATIEEVRANDYKLTPGIYVGTEVSNEDDVPFEEKM  474
            +A  Y+A +      YEDIAGFCKVA +EEV+ N+Y LTPG YVG    +ED+ PFE+KM
Sbjct  416  VAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKM  475

Query  475  AELTQRLLEQFEESNRLQEKIKQDLEGL  502
              +T  L EQF  S+ L+++I++ LEGL
Sbjct  476  ERITSELSEQFAKSKELEDQIRKSLEGL  503

299) ASU2_03895 in NC_018690


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  405 bits (1525),  Expect = 2e-114, Method: Compositional matrix adjust.
 Identities = 235/528 (45%), Positives = 367/528 (70%), Gaps = 46/528 (8%)

Query  2    KAADKLRQQLDAANYKHIVLGLIFLKYVSDSFTAQRERLSAQFQDPNSDYYLPDATQEEI  61
            +AADKLR  +DAA+YK++ LGLIFLKYVSDSF         ++++ + D Y  +  Q+E 
Sbjct  15   QAADKLRGSMDAAEYKNVALGLIFLKYVSDSF-------EEKYEELKQDPYADEEDQDE-  66

Query  62   ESELEERDYYTQDNVFWVPQTARWDEIKAVVRSNLGDTIFGDKTFKGVANLIDEAFDAIE  121
                     Y  +N+FWVP+ ARW+ I+   +               ++++ID A  AIE
Sbjct  67   ---------YLAENIFWVPKEARWQYINDNAKKP------------EIGQIIDKAMIAIE  105

Query  122  KDNPKLKGVIQR-ISSYNVDESILIGLVELFSDTNFTRPTLNGKPVSLAAKDILGHVYEY  180
            ++N  LKGV+ +  +   +D   L ++++LF+   F     +++      +D+LG+VYEY
Sbjct  106  NENESLKGVLPKEYARPALDKEKLGDIIDLFT---FKVGDTESRK-----QDVLGRVYEY  157

Query  181  FLGQFALAEGKKGGQYFTPKSIVTLIIEMLEPYEGRIYDPAMGSGGFFVQTERFIREHQG  240
            F+++FA AEGK++G+++TP SIV L++EM+EPY GRIYDP  GSGG FVQ+ERF+  HQG
Sbjct  158  FIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQG  217

Query  241  NPNRVSIYGQEFNPTTWKLAAMNMAIHGLSFDFGKGNADTFSNPQHLDKRMDFVMANPPF  300
              + ++IYGQE NPTTWKLA MN+AI+G+  D+G  NADTF N  H + + D+++ANPPF
Sbjct  218  RLDDIAIYGQESNPTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPF  277

Query  301  NMNEWWNQSLANDPRWKFGTPPSSNANFAWLQHMIYHLSEKGKMALLLANGSMSSNTNNE  360
            N ++W ++ L +D RW+FG PP +NAN+AW++HMI  L+ +G  +++LANGSMS++ ++E
Sbjct  278  NASDWGQERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDE  337

Query  361  GEIRRNIVRADLVEAMIALPSQLFTNTQIPACIWVLNKAKPRKG------EVLFIDARQL  414
             EIR+N++  DLVE +++LP+QLF +TQIP C+W +++ K ++G      E+LFIDAR++
Sbjct  338  LEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREI  397

Query  415  GYMKTRVMRDFTPKDIASVAETYHQWQ--KGEGYQDVPAFCKSATLAEIESHDFVLTPGR  472
            G M +R +++F+  DI  VA+TYH W+  ++  Y+D+++FCK A L E+ +++++LTPGR
Sbjct  398  GHMVSRTLKEFSDEDIQKVAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGR  457

Query  473  YVGTAEVEDDGIPFAEKIQNLTALLDQQFKQGAELEAKIRANLKTLGF  520
            YVG A+VE+D  PF +K++ +T+ L +QF ++ ELE +IR +L  LG+
Sbjct  458  YVGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGY  505

300) UMN179_00643 in NC_015460


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  403 bits (1517),  Expect = 9e-114, Method: Compositional matrix adjust.
 Identities = 232/461 (51%), Positives = 342/461 (75%), Gaps = 29/461 (6%)

Query  31   RDNYTAENIFWVPAQARWENLKNVVILRKGSELPWGGTFRGVANLIDDAFTAIEKENPKL  90
            +D+Y AENIFWVP +ARW+ +++             +    ++++ID A  AIE+EN  L
Sbjct  64   QDEYLAENIFWVPKEARWQYIND------------NAKKPEIGQIIDKAMIAIENENESL  111

Query  91   KGIIQR-ISGFDVEEQTLIGLVNLFSDTHFNQPTYNGEPISLAAKDILGHVYEYFLGEFA  149
            KG++ +  +   ++ + L ++++LF        T++        +D+LG+VYEYF++ FA
Sbjct  112  KGVLPKEYARPALDKEKLGDIIDLF--------TFKVGDTESRKQDVLGRVYEYFIAKFA  163

Query  150  LAEGKKGGQYFTPKSIVTLIVEMLQPYQGRIYDPAMGSGGFFVQTEKFIEAHQGNINQVS  209
             AEGK++G+++TP SIV L+VEM++PY+GRIYDP  GSGG FVQ+E+F+E HQG +++++
Sbjct  164  SAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIA  223

Query  210  IYGQESNPTTWKLAAMNMAIRGIEFDFGKSNADSFKQPQHIDKKMDFVMANPPFNMKDWW  269
            IYGQESNPTTWKLA MN+AIRGI+ D+G  NAD+F +  H + K D+++ANPPFN  DW 
Sbjct  224  IYGQESNPTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWG  283

Query  270  NESLQDDPRWQYGIPPEGNANFAWLQHMLYHLSPNGRMGLLLANGSMSSQTGGEGEIRQR  329
            +E L DD RWQ+GIPP GNAN+AW++HM+  L+PNG  G++LANGSMS+   +E EIR+ 
Sbjct  284  QERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKN  343

Query  330  LLEADLVECMVALPGQLFTNTQIPACIWFLNKNKP------RAKEVLFIDAREIGYMKDR  383
            L+E DLVEC+V+LPGQLF +TQIP C+WF+++NK       R +E+LFIDAREIG M  R
Sbjct  344  LIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSR  403

Query  384  VLRDFTTEDIAKIADTYHAWQ--QNNGYENQAGFCYAASLDEIANNDFVLTPGRYVGTAE  441
             L++F+ EDI K+A+TYHAW+  +++ YE+ AGFC  A+L+E+ NN+++LTPGRYVG A+
Sbjct  404  TLKEFSDEDIQKVAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLAD  463

Query  442  QQDDGIPFAEKMQKLTALLNQQFEQGRELESEIRKNLLMLG  482
             ++D  PF +KM+++T+ L++QF +++ELE +IRK+L  LG
Sbjct  464  VEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLG  504

301) J450_02370 in NC_021738


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  402 bits (1512),  Expect = 2e-113, Method: Compositional matrix adjust.
 Identities = 244/544 (45%), Positives = 370/544 (69%), Gaps = 58/544 (10%)

Query  21   DLDQTLWTAADKLRKNLDAANYKHIVLGFIFLKYISDSFTD-FQAKLKTQLTTPESELYL  79
            ++++ LW AADKLR ++DAA+YK++ LG+IFLKY+SDSF + ++               L
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEE--------------L  53

Query  80   DPALFDEQEFSQILAEELEQRDYYAAENIFWVPEQARWDNIKSLSKLNLGDELPWGDKFK  139
                + ++E          ++D Y AENIFWVP +ARW+ I+  +K              
Sbjct  54   KQDPYADEE----------DQDEYLAENIFWVPKEARWQYINDNAKKP------------  91

Query  140  GVSRLIDDAFEAIERENPKLKGVLQRIAGFGVPD---EMLTGLIDLFSRTNFTQPMHNGE  196
             ++++ID A  AIE EN  LKGVL +   ++ P    E L ++IDLF+         +  
Sbjct  92   EIGQIIDKAMIAIENENESLKGVLPK--EYARPALDKEKLGDIIDLFT--------FKVG  141

Query  197  PVHLQAKDILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIVEMLKPYSGRIYDPAMGS  256
              + + +D+LG+VYEYF+++FA AEGK++G+++TP SIV L+VEM+ PY GRIYDP  GS
Sbjct  142  DTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGS  201

Query  257  GGFFVQADRFIPAHQGNRNAISVYGQESNPNTRKLAVMNMAIRGIPFDFGDKPEDTLLNP  316
            GG FVQ++RF+  HQG  + I++YGQESNP T+KLA MN+AIRGI  D+G++  DT+ N 
Sbjct  202  GGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRGIDNDLGERNADTFHND  261

Query  317  LHIDKKMDVVMANPPFNQKAWWSESLANDPRWAYGTPPQGNANFAWLQHMIYHLSPKGKM  376
            LH + K D ++ANPPFN   W  E L +D RW +G PP+GNAN+AW++HMI  L+P+G  
Sbjct  262  LHKGLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTA  321

Query  377  ALLLANGSMSSQTSGEGDIRKNIVQADLVEAMIALPNQLFTNTQIPACIWIINKAKA---  433
            +++LANGSMS+   +E +IRKN+++ DLVE +++LP QLF +TQIP C+W+I++ K+   
Sbjct  322  GFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNG  381

Query  434  ---RKKEVLFINATQIGYMKDRVLRDFTADDIAKISDTYHNWQ--KQDGYENIPAFCYCA  488
               R +E+LFI+A +IG M  R L++F+ +DI K+++TYH W+  ++  YE+I++FC  A
Sbjct  382  KKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRGTNDKPYEDIAGFCKVA  441

Query  489  TLDEIAKNDFVLTAGRYVGAAVEEDDGVPFAQKMQELTALLNEQFRQGRALEEKIVANLK  548
             L+E+ +N+++LT+GRYVG A  E+D  PF QKM+ +T+ L+EQF +++ LE++I  +L 
Sbjct  442  NLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLE  501

Query  549  GLGF  552
            GLG+
Sbjct  502  GLGY  505

302) hsdM3 in NC_009053


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  399 bits (1502),  Expect = 1e-112, Method: Compositional matrix adjust.
 Identities = 241/528 (46%), Positives = 369/528 (70%), Gaps = 46/528 (8%)

Query  3    KAADKLRQQLDAANYKHIVLGLIFLKYVSDSFTAQRERLSAQFRDPNSDYYlsditteei  62
            +AADKLR  +DAA+YK++ LGLIFLKYVSDSF  + E L    +DP +D           
Sbjct  15   QAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELK---QDPYAD-----------  60

Query  63   eseleerdyyTQDNVFWVPQIARWNEIKAVVRANLGDTIFENKTFKGVANLIDEAFDAIE  122
                E++D Y  +N+FWVP+ ARW+ I+   +               ++++ID A  AIE
Sbjct  61   ---EEDQDEYLAENIFWVPKEARWQYINDNAKKP------------EIGQIIDKAMIAIE  105

Query  123  KDNPKLKGVIQR-ISSYNVDESILIGLVELFSDTNFTHPTLNGKPVSLAAKDILGHVYEY  181
            ++N  LKGV+ +  +   +D   L ++++LF+   F     +++      +D+LG+VYEY
Sbjct  106  NENESLKGVLPKEYARPALDKEKLGDIIDLFT---FKVGDTESRK-----QDVLGRVYEY  157

Query  182  FLGQFALAEGKKGGQYFTPKSIVTLIIEMLEPYEGRIYDPAMGSGGFFVQTERFIREHQG  241
            F+++FA AEGK++G+++TP SIV L++EM+EPY GRIYDP  GSGG FVQ+ERF+  HQG
Sbjct  158  FIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQG  217

Query  242  NPNRVSIYGQEFNPTTWKLAAMNMAIRGLSFDFGKGNADTFSNPQHLDKRMDFVMANPPF  301
              + ++IYGQE NPTTWKLA MN+AIRG+  D+G  NADTF N  H + + D+++ANPPF
Sbjct  218  RLDDIAIYGQESNPTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPF  277

Query  302  NMNEWWNQSLANDPRWKFGTPPSSNANFAWLQHMIYHLSEKGKMALLLANGSMSSNTNNE  361
            N ++W ++ L +D RW+FG PP +NAN+AW++HMI  L+ +G  +++LANGSMS++ ++E
Sbjct  278  NASDWGQERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDE  337

Query  362  GEIRRNIVRADLVEAMIALPSQLFTNTQIPACIWVLNKAKPRKG------EVLFIDARQL  415
             EIR+N++  DLVE +++LP+QLF +TQIP C+W +++ K ++G      E+LFIDAR++
Sbjct  338  LEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREI  397

Query  416  GYMKTRVMRDFTPKDIASVAETYHQWQ--KGEGYQDVPAFCKSATLAEIESHDFVLTPGR  473
            G M +R +++F+  DI  VA+TYH W+  ++  Y+D+++FCK A L E+ +++++LTPGR
Sbjct  398  GHMVSRTLKEFSDEDIQKVAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGR  457

Query  474  YVGAAEVEDDGIPFAEKMQNLTALLNEQFKQGAELEAKIRANLATLGF  521
            YVG A+VE+D  PF +KM+ +T+ L+EQF ++ ELE +IR +L  LG+
Sbjct  458  YVGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGY  505

303) ZPR_3435 in NC_014041


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  399 bits (1501),  Expect = 2e-112, Method: Compositional matrix adjust.
 Identities = 238/510 (47%), Positives = 367/510 (72%), Gaps = 21/510 (4%)

Query  16   LWDAANKLRGSIEPSEYKHVVLGLIFLKFASDKFEVRREELIAEGKEKYLEM--KDFYNM  73
            LW+AA+KLRGS++++EYK+V LGLIFLK+ SD FE + EEL    ++ Y +   +D Y  
Sbjct  13   LWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL---KQDPYADEEDQDEYLA  69

Query  74   KNVFFLAETSRWNYLIKNAKQDDIALKIDTALNQIEKNNPSLKGALPDNYFSRLGLDKSK  133
             N+F ++  +RW+Y+  NAK+ +I+  ID A+  IE++N SLKG LP +Y +R +LDK K
Sbjct  70   ENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEY-ARPALDKEK  128

Query  134  LSALLDTIN-KIDTQKDKSQDIVGRVYEYFLSKFALAEGKGKGEFYTPKSIVNLIAEMIE  192
            L+ ++D +  K++    + QD++GRVYEYF++KFA AEGK  GEFYTP SIV+L+ EMIE
Sbjct  129  LGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIE  188

Query  193  PYKGIIYDPACGSGGMFVQSIKFIESHHGSKREISIYGQEYTNTTYKLAKMNLAIRGISA  252
            PYKG IYDP CGSGGMFVQS +F+E H+G   +I+IYGQE   TT KLAKMNLAIRGI  
Sbjct  189  PYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRGIDN  248

Query  253  NLGDKAADTFSNDQHKDLKADYIMANPPFNQKDWRGPQELIDDPRWQGYEVPPKSNANYG  312
            +LG++ ADTF ND HK+LKADYI+ANPPFN  DW G + L+DD RWQ + +PPK+NANY+
Sbjct  249  DLGERNADTFHNDLHKGLKADYILANPPFNASDW-GQERLLDDYRWQ-FGIPPKGNANYA  306

Query  313  WILNMVSKLSDDGVAGFILANGALSGGG-EEYKIRRKLVENNLVEAIIILPQNMFYTTNI  371
            WI +M+SKL+ +G AGF+LANG++S +G +E  IR++L+E++LVE I+ LP ++FY+T+I
Sbjct  307  WIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQI  366

Query  372  SVTVWILNRNKTAHTRSIGdeerhyrdrheeVLFMDLRQNGEPFEKKFIQFSGTQIKDIA  431
            +V +W+++ NK  + +          +R++E+LF+D R+ G+   + + +FS+ +I+ +A
Sbjct  367  PVCLWFISNNKGQNGKK---------ERENEILFIDAREIGHMVSRTLKEFSDEDIQKVA  417

Query  432  RTYHDWQ-QEDTNYKDIPEYCYSATKADIEKKDFSLVPSKYIEFVNRDENID-FDTKMAG  489
            +TYH W+  +D  Y DI+ +C  A   ++ ++++ L P++Y+ + + +E+ + F+ KM  
Sbjct  418  QTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMER  477

Query  490  lqteltdllqqeedSKKELLDVFKELGYAI  519
            + +EL++ + +  +   ++   +  LGY++
Sbjct  478  ITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

304) CCDC5079_2529 in NC_017523


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  398 bits (1497),  Expect = 3e-112, Method: Compositional matrix adjust.
 Identities = 228/461 (50%), Positives = 341/461 (74%), Gaps = 21/461 (4%)

Query  11   DDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAVMKANPTLG  70
            +D ++Y +  +F VP  ARW+++ +N+K KP        +IGQ+ID AM A+ + N +L 
Sbjct  62   EDQDEYLAENIFWVPKEARWQYINDNAK-KP--------EIGQIIDKAMIAIENENESLK  112

Query  71   GTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLGNFARAEGKRG  130
            G LP+ Y +  +D+ +LG++IDLF       + E R +D++G VYEYF+++FA AEGK +
Sbjct  113  GVLPKEYARPALDKEKLGDIIDLFTFK--VGDTESRKQDVLGRVYEYFIAKFASAEGKNA  170

Query  131  GEFFTPPSVVKVIVEVLEPSSGRVYDPCCGSGGMFVQTEKFIYEHDGDPKDVSIYGQESI  190
            GEF+TP+S+VK++VE++EP  GR+YDPCCGSGGMFVQ+E+F+  H+G   D++IYGQES 
Sbjct  171  GEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESN  230

Query  191  EETWRMAKMNLAIHGIDNKGLGARWSDTFARDQHPDVQMDYVMANPPFNIKDWARNE--E  248
              TW++AKMNLAI+GIDN +LG R +DTF  D H +++ DY++ANPPFN  DW+++   +
Sbjct  231  PTTWKLAKMNLAIRGIDN-DLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLD  289

Query  249  DPRWRFGVPPANNANYAWIQHILYKLAPGGRAGVVMAngsmssnsngegDIRAQIVEADL  308
            D RW+FG+PP  NANYAWI+H++ KLAP G AG V+ANGSMS+++++E +IR +++E DL
Sbjct  290  DYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDL  349

Query  309  VSCMVALPTQLFRSTGIPVCLWFFAKDKAAGKQGSIDRCGQVLFIDARELGDLVDRAERA  368
            V C+V+LP QLF ST IPVCLWF++++K  G++G  +R  ++LFIDARE+G++V R+ + 
Sbjct  350  VECIVTLPGQLFYSTQIPVCLWFISNNK--GQNGKKERENEILFIDAREIGHMVSRTLKE  407

Query  369  LTNEEIVRIGDTFHAWRGSKSAAVKGIMYEDVPGFCKSATLAEIKATDYALTPGRYVGTP  428
            +++E+I ++++T+HAWRG++  +     YED++GFCK A L E+K  +Y LTPGRYVG +
Sbjct  408  FSDEDIQKVAQTYHAWRGTNDKP-----YEDIAGFCKVANLEEVKNNEYILTPGRYVGLA  462

Query  429  AVEDDGEPIDEKMARLSKALLEAFDESARLERVVREQLGRL  469
             VE+D EP+++KM R++  L E F  S  LE  +R  L  L
Sbjct  463  DVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

305) infB in NC_009566


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  395 bits (1486),  Expect = 2e-111, Method: Compositional matrix adjust.
 Identities = 234/453 (52%), Positives = 330/453 (73%), Gaps = 33/453 (7%)

Query  1    MPASARWQALQEVSILNTGAELPWGGKFAGVARLIDDAFDAIEKDNEKLKGVLQRISGYA  60
            +P  ARWQ +++             +K + ++++ID A  AIE++NE LKGVL +   YA
Sbjct  75   VPKEARWQYIND------------NAKKPEIGQIIDKAMIAIENENESLKGVLPK--EYA  120

Query  61   ---VNEDTLRGLIILFSDTHFTRPTYNGEPVHLGAKDILGHVYEYFLGRFAQAEGKRGGQ  117
               ++ + L ++I LF        T++    +   +D+LG+VYEYF+++FA AEGK +G+
Sbjct  121  RPALDKEKLGDIIDLF--------TFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGE  172

Query  118  YFTPKSIVSLIVEMLEPYSGRVYDPAMGSGGFFVQTERFITAHQGNINNVSIYGQEFNPT  177
            ++TP SIV L+VEM+EPY GR+YDP  GSGG FVQ+ERF+  HQG +++++IYGQE NPT
Sbjct  173  FYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPT  232

Query  178  TWKLAAMNMAIRGIDYDFGKYNADSFTQPQHIDKKMDFIMANPPFNISDWWSESLADDPR  237
            TWKLA MN+AIRGID D+G  NAD+F +  H + K D+I+ANPPFN SDW  E L DD R
Sbjct  233  TWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYR  292

Query  238  WAYGTPPKGNANFAWLQHMIYHLSPNGKMALLLANGSMSSQTNNEGEIRKGIINANLVEC  297
            W +G PPKGNAN+AW++HMI  L+PNG  +++LANGSMS+  ++E EIRK +I+ +LVEC
Sbjct  293  WQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVEC  352

Query  298  MVALPGQLFTNTQIPACIWFLNRN------KKRKGEVLFIDARQIGYMKDRVLRDFTADD  351
            +V+LPGQLF +TQIP C+WF++ N      K R  E+LFIDAR+IG M  R L++F+ +D
Sbjct  353  IVTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDED  412

Query  352  IAKIANTLHAWQKSDG--YEDQAAFCKSTTLEEIKDNDFVLTPGRYVGTAEQEDDGVPFA  409
            I K+A+T HAW+ +++  YED A+FCK + LEE+K+N+++LTPGRYVG A+ E+D  PF 
Sbjct  413  IQKVAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFE  472

Query  410  EKMQNLTALLKEQFAKSAELEAEIKKNLGGLGY  442
            +KM+ +T+ L EQFAKS ELE +I+K+L GLGY
Sbjct  473  QKMERITSELSEQFAKSKELEDQIRKSLEGLGY  505

306) VAA_01699 in NC_015633


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  394 bits (1483),  Expect = 5e-111, Method: Compositional matrix adjust.
 Identities = 220/472 (47%), Positives = 336/472 (72%), Gaps = 18/472 (3%)

Query  18   SFEETLWDAANKLRGSVESSEYKHIVLSLIFLKFISDTFEKQRQKLIDAGLEKHIDMVPA  77
            +FEE LW+AA+KLRGS++++EYK++ L+LIFLK++SD+FE + + L +     + D    
Sbjct  8    GFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQ-DE  66

Query  78   YTKDNVFYLPEESRWSFIQKNAKQEDIALKIDTALSTIEKTNKALQGALPDNYFSRLGLD  137
            Y  +N+F +P E+RW +I+ NAK+ +I+  ID A+ +IE+ N +L+G LP +Y +R +LD
Sbjct  67   YLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEY-ARPALD  125

Query  138  VSKLAALIDVIN-NIDTLANPHEDVVGRVYEYFLSKFAIAEGKGKGEFYTPKSIVNLIAE  196
              KL+ +ID++  +++   +  +DV+GRVYEYF++KFA AEGK  GEFYTP SIV+L+ E
Sbjct  126  KEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVE  185

Query  197  LIEPYKGTIYDPCCGSGGMFVQSLSFIESHKGNKKDVSVYGQEYTGTTYKLAKMNLAIRG  256
            +IEPYKG IYDPCCGSGGMFVQS  F+E H+G   D+++YGQE   TT KLAKMNLAIRG
Sbjct  186  MIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRG  245

Query  257  ISANLGSKDKNTFTDDQHPTLKADFIMANPPYNQKNWRESDELVDDARWDGYETPPTSNA  316
            I  +LG ++ +TF +D H  LKAD+I+ANPP+N  +W   + L+DD RW+ +  PP +NA
Sbjct  246  IDNDLGERNADTFHNDLHKGLKADYILANPPFNASDW-GQERLLDDYRWQ-FGIPPKGNA  303

Query  317  NYAWILHMVSKLSEGGVAGFILSNGVLSSGGTEQ-KIREKLIRNKLVEAIIVLPMNMFYT  375
            NYAWI HM+SKL+  G AGF+L+NG +S++G ++  IR +LI + LVE I+ LP ++FY+
Sbjct  304  NYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYS  363

Query  376  TDTSVSLWIINKNKKKQVIEHTVDETVTLRDRENETLFIDARNFGSVYDKKFIEFLYERD  435
            T+ +V LW+I++NK ++            ++RENE LFIDAR++G +  + + EF  + D
Sbjct  364  TQIPVCLWFISNNKGQN----------GKKERENEILFIDAREIGHMVSRTLKEFS-DED  412

Query  436  IQKIVSIFRSWRGEGFEDNYQNIDELCYSASISEIESKGFSLVPSSYIKFKE  487
            IQK+   +++WRG   +  Y++I  +C  A++ E+ ++ + L P+ Y+ + +
Sbjct  413  IQKVAQTYHAWRGTN-DKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLAD  463

307) J451_03480 in NC_021739


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  376 bits (1414),  Expect = 1e-105, Method: Compositional matrix adjust.
 Identities = 220/468 (48%), Positives = 337/468 (73%), Gaps = 33/468 (7%)

Query  2    EQRDYYAAENIFWVPEQARWDNIKSLSKLNLGDELPWGDKFKGVSRLIDDAFEAIERENP  61
            E++D Y AENIFWVP +ARW+ I+  +K               ++++ID A  AIE EN 
Sbjct  62   EDQDEYLAENIFWVPKEARWQYINDNAKKP------------EIGQIIDKAMIAIENENE  109

Query  62   KLKGVLQRIAGFGVPD---EMLTGLIDLFSRTNFTQPMHNGEPVHLQAKDILGHVYEYFL  118
             LKGVL +   ++ P    E L ++IDLF+         +    + + +D+LG+VYEYF+
Sbjct  110  SLKGVLPK--EYARPALDKEKLGDIIDLFT--------FKVGDTESRKQDVLGRVYEYFI  159

Query  119  GQFALAEGKKGGQYFTPKSIVTLIVEMLEPYSGRIYDPAMGSGGFFVQADRFIQAHAGNR  178
            ++FA AEGK++G+++TP SIV L+VEM+EPY GRIYDP  GSGG FVQ++RF++ H G  
Sbjct  160  AKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRL  219

Query  179  NAISVYGQESNSTTRKLAVMNMAIRGIPFDFGDKPEDTLLNPLHIDKKMDVVMANPPFNQ  238
            + I++YGQESN+TT+KLA MN+AIRGI  D+G++  DT+ N LH + K D ++ANPPFN 
Sbjct  220  DDIAIYGQESNPTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNA  279

Query  239  KEWWNESLANDPRWAYGTPPQGNANFAWLQHMIYHLSPKGKMALLLANGSMSSQTSGEGD  298
             +W +E L +D RW +G PP+GNAN+AW++HMI  L+P+G  +++LANGSMS+   +E +
Sbjct  280  SDWGQERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELE  339

Query  299  IRKNIVQADLVEAMIALPNQLFTNTQIPACIWIINKAKARKG------EVLFINATQIGY  352
            IRKN+++ DLVE +++LP QLF +TQIP C+W+I++ K+++G      E+LFI+A +IG 
Sbjct  340  IRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGH  399

Query  353  LKDRVLRDFTADDIAKISDTYHNWQ--KQNGYENIPAFCYCATLDEIAKNDFVLTAGRYV  410
            +  R L++F+ +DI K+++TYH W+  +++ YE+I++FC  A L+E+ +N+++LT+GRYV
Sbjct  400  MVSRTLKEFSDEDIQKVAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYV  459

Query  411  GAVQEENDGVPFAEKMQELTALLNEQFKQGRELEQQIAENLKGLGYGI  458
            G  + E+D  PF +KM+ +T+ L+EQF +++ELE+QI  +L GLGYG+
Sbjct  460  GLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

308) D648_15970 in NC_020834


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  376 bits (1414),  Expect = 1e-105, Method: Compositional matrix adjust.
 Identities = 220/468 (48%), Positives = 337/468 (73%), Gaps = 33/468 (7%)

Query  2    EQRDYYAAENIFWVPEQARWDNIKSLSKLNLGDELPWGDKFKGVSRLIDDAFEAIERENP  61
            E++D Y AENIFWVP +ARW+ I+  +K               ++++ID A  AIE EN 
Sbjct  62   EDQDEYLAENIFWVPKEARWQYINDNAKKP------------EIGQIIDKAMIAIENENE  109

Query  62   KLKGVLQRIAGFGVPD---EMLTGLIDLFSRTNFTQPMHNGEPVHLQAKDILGHVYEYFL  118
             LKGVL +   ++ P    E L ++IDLF+         +    + + +D+LG+VYEYF+
Sbjct  110  SLKGVLPK--EYARPALDKEKLGDIIDLFT--------FKVGDTESRKQDVLGRVYEYFI  159

Query  119  GQFALAEGKKGGQYFTPKSIVTLIVEMLEPYSGRIYDPAMGSGGFFVQADRFIQAHAGNR  178
            ++FA AEGK++G+++TP SIV L+VEM+EPY GRIYDP  GSGG FVQ++RF++ H G  
Sbjct  160  AKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRL  219

Query  179  NAISVYGQESNSTTRKLAVMNMAIRGIPFDFGDKPEDTLLNPLHIDKKMDVVMANPPFNQ  238
            + I++YGQESN+TT+KLA MN+AIRGI  D+G++  DT+ N LH + K D ++ANPPFN 
Sbjct  220  DDIAIYGQESNPTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNA  279

Query  239  KEWWNESLANDPRWAYGTPPQGNANFAWLQHMIYHLSPKGKMALLLANGSMSSQTSGEGD  298
             +W +E L +D RW +G PP+GNAN+AW++HMI  L+P+G  +++LANGSMS+   +E +
Sbjct  280  SDWGQERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELE  339

Query  299  IRKNIVQADLVEAMIALPNQLFTNTQIPACIWIINKAKARKG------EVLFINATQIGY  352
            IRKN+++ DLVE +++LP QLF +TQIP C+W+I++ K+++G      E+LFI+A +IG 
Sbjct  340  IRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGH  399

Query  353  LKDRVLRDFTADDIAKISDTYHNWQ--KQNGYENIPAFCYCATLDEIAKNDFVLTAGRYV  410
            +  R L++F+ +DI K+++TYH W+  +++ YE+I++FC  A L+E+ +N+++LT+GRYV
Sbjct  400  MVSRTLKEFSDEDIQKVAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYV  459

Query  411  GAVQEENDGVPFAEKMQELTALLNEQFKQGRELEQQIAENLKGLGYGI  458
            G  + E+D  PF +KM+ +T+ L+EQF +++ELE+QI  +L GLGYG+
Sbjct  460  GLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

309) N220_08960 in NC_021883


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  376 bits (1414),  Expect = 1e-105, Method: Compositional matrix adjust.
 Identities = 220/468 (48%), Positives = 337/468 (73%), Gaps = 33/468 (7%)

Query  2    EQRDYYAAENIFWVPEQARWDNIKSLSKLNLGDELPWGDKFKGVSRLIDDAFEAIERENP  61
            E++D Y AENIFWVP +ARW+ I+  +K               ++++ID A  AIE EN 
Sbjct  62   EDQDEYLAENIFWVPKEARWQYINDNAKKP------------EIGQIIDKAMIAIENENE  109

Query  62   KLKGVLQRIAGFGVPD---EMLTGLIDLFSRTNFTQPMHNGEPVHLQAKDILGHVYEYFL  118
             LKGVL +   ++ P    E L ++IDLF+         +    + + +D+LG+VYEYF+
Sbjct  110  SLKGVLPK--EYARPALDKEKLGDIIDLFT--------FKVGDTESRKQDVLGRVYEYFI  159

Query  119  GQFALAEGKKGGQYFTPKSIVTLIVEMLEPYSGRIYDPAMGSGGFFVQADRFIQAHAGNR  178
            ++FA AEGK++G+++TP SIV L+VEM+EPY GRIYDP  GSGG FVQ++RF++ H G  
Sbjct  160  AKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRL  219

Query  179  NAISVYGQESNSTTRKLAVMNMAIRGIPFDFGDKPEDTLLNPLHIDKKMDVVMANPPFNQ  238
            + I++YGQESN+TT+KLA MN+AIRGI  D+G++  DT+ N LH + K D ++ANPPFN 
Sbjct  220  DDIAIYGQESNPTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNA  279

Query  239  KEWWNESLANDPRWAYGTPPQGNANFAWLQHMIYHLSPKGKMALLLANGSMSSQTSGEGD  298
             +W +E L +D RW +G PP+GNAN+AW++HMI  L+P+G  +++LANGSMS+   +E +
Sbjct  280  SDWGQERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELE  339

Query  299  IRKNIVQADLVEAMIALPNQLFTNTQIPACIWIINKAKARKG------EVLFINATQIGY  352
            IRKN+++ DLVE +++LP QLF +TQIP C+W+I++ K+++G      E+LFI+A +IG 
Sbjct  340  IRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGH  399

Query  353  LKDRVLRDFTADDIAKISDTYHNWQ--KQNGYENIPAFCYCATLDEIAKNDFVLTAGRYV  410
            +  R L++F+ +DI K+++TYH W+  +++ YE+I++FC  A L+E+ +N+++LT+GRYV
Sbjct  400  MVSRTLKEFSDEDIQKVAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYV  459

Query  411  GAVQEENDGVPFAEKMQELTALLNEQFKQGRELEQQIAENLKGLGYGI  458
            G  + E+D  PF +KM+ +T+ L+EQF +++ELE+QI  +L GLGYG+
Sbjct  460  GLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

310) K756_04795 in NC_021521


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  374 bits (1405),  Expect = 6e-105, Method: Compositional matrix adjust.
 Identities = 213/421 (51%), Positives = 319/421 (76%), Gaps = 17/421 (4%)

Query  31   IANLIDDAFDAIEQDNPKLKNVIQR-ISPYKVDESILLGLIDLFSDTNFTRPTLDGKPIS  89
            I+++ID A  AIE++N  LK V+ +  +   +D   L ++IDLF+   F     +++   
Sbjct  93   IGQIIDKAMIAIENENESLKGVLPKEYARPALDKEKLGDIIDLFT---FKVGDTESRK--  147

Query  90   LAAKDILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIIEMLEPYKGRIYDPAMGSGGF  149
               +D+LG+VYEYF+++FA AEGK++G+++TP SIV L++EM+EPYKGRIYDP  GSGG 
Sbjct  148  ---QDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGM  204

Query  150  FVQTERFIREHQGNVSEVSIFGQEFNPTTWKLAAMNMAIRGIEFDFGKGNADTFSNPQHR  209
            FVQ+ERF+  HQG + +++I+GQE NPTTWKLA MN+AIRGI+ D+G  NADTF N  H+
Sbjct  205  FVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHK  264

Query  210  DKKMDFVMANPPFNMKDWWNESLAQDPRWQYGIPPEGNANFAWLQHMIYHLSPNGRMALL  269
            + K D+++ANPPFN  DW +E L +D RWQ+GIPP GNAN+AW++HMI  L+PNG  +++
Sbjct  265  GLKADYILANPPFNASDWGQERLLDDYRWQFGIPPKGNANYAWIEHMISKLAPNGTAGFV  324

Query  270  LANGSMSSNTNNEGEIRKNILKADLVEAMIALPSQLFTNTQIPACIWILNKNKARKG---  326
            LANGSMS++ ++E EIRKN++  DLVE +++LP+QLF +TQIP C+W++++NK+++G   
Sbjct  325  LANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKKE  384

Query  327  ---EVLFIDARQLGYMKDRVLRDFTADDIAKVADTYHHWQQSAD--YQNIPAFCYTATLD  381
               E+LFIDAR++G M  R L++F+ +DI KVA+TYH W+ + D  Y++I++FC  A L+
Sbjct  385  RENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHAWRGTNDKPYEDIAGFCKVANLE  444

Query  382  ELAQKDFVLTPGRYVGAAEQEDDGVPFAEKMQELTALLQQQFKQSAELEAKIKANLASLG  441
            E+ +++++LTPGRYVG A+ E+D  PF +KM+ +T+ L +QF +S ELE +I+ +L +LG
Sbjct  445  EVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLG  504

Query  442  Y  442
            Y
Sbjct  505  Y  505

311) P700755_000890 in NC_018721


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  371 bits (1396),  Expect = 4e-104, Method: Compositional matrix adjust.
 Identities = 225/539 (42%), Positives = 362/539 (68%), Gaps = 44/539 (8%)

Query  8    ADINFEQELWKAANELRGAVAENQYKDYILPLIFLKHISEKYEVRKEELFQALNDKGSDY  67
            A I FE+ LW+AA+ LRG++   +YK+  L LIFLK +S+ +E +    ++ L++     
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEK----YEELKQDP---  57

Query  68   YTNDTEEQNYVLEDPDEYLSKNTYIIPKEATWQYLQDNAEQDNIKVLVDNAFDLLDDTLA  127
            Y+++        ED DEYL+ N + +PKEA WQY++DNA + +I  ++D+A   +++   
Sbjct  58   YADE--------EDQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENE--  107

Query  128  EFRPELKGILPRIFVKSQLTPKQVAGLINLLAKPKLSEKENPGSDILGRVYEYYIGKFAI  187
                 LKG+LP+ + ++ L   +++++I+L++  K+++ E+   D+LGRVYEY+I+KFA 
Sbjct  108  --NESLKGVLPKEYARPALDKEKLGDIIDLFT-FKVGDTESRKQDVLGRVYEYFIAKFAS  164

Query  188  AEGSGAGQFFTPSSIVRLLVEMIEPYQGKIFDNACGSGGMFIQSLKFLQAHGGDKKNISI  247
            AEG  AG+F+TPSSIV+LLVEMIEPY+G+I+D  CGSGGMF+QS +F++ H G   +I+I
Sbjct  165  AEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAI  224

Query  248  YGQERYDGTLRLCKMNLALRDLSFDV--RLGDSLLQDKFPDLEADFIIVNPPFNVSQWHP  305
            YGQE    T +L KMNLA+R++  D+  R +D++ +D   +L AD+I+ NPPFN S+W  
Sbjct  225  YGQESNPTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQ  284

Query  306  EDLPENDPRLFGTKEEFTTDGNANYMWMQTFWNHLSDTGTAAVVMANGAMTSNTKGEKNV  365
            E L ++  + FG    +   GNANY W++   + L+  GTA+ V+ANG+M+++ K+E ++
Sbjct  285  ERLLDDYRWQFG----IPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEI  340

Query  366  RQHMVDHGMVDCIVRLPDKLFLTTGIPACIFILSKNRDGKDGKHRKRDNEVLFIDLSKHG  425
            R++++++++V+CIV LP++LF +T IP C+ ++S+N+ G++GK + R+NE+LFID    G
Sbjct  341  RKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNK-GQNGK-KERENEILFIDAREIG  398

Query  426  RMESRKLRVFDEADLQKATDTYHAWRNIKDSVTSSDSAKAELYREADTYIDQPGFSYSAN  485
            +M SR L+ F + D+QK ++TYHAWR  +D                  Y D +GF   AN
Sbjct  399  HMVSRTLKEFSDEDIQKVAQTYHAWRGTNDK----------------PYEDIAGFCKVAN  442

Query  486  LEEIAKQDYKLTPGIYVGTEAVEDDGIPFEHKMETLKAQLQTQFKTGNALQKQILDNFE  544
            LEE+ +++Y LTPG YVG   VE+D  PFE+KME + ++L  QF  ++ L+ QI  ++E
Sbjct  443  LEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLE  501

312) MHH_c24290 in NC_021082


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  362 bits (1360),  Expect = 2e-101, Method: Compositional matrix adjust.
 Identities = 210/455 (47%), Positives = 326/455 (72%), Gaps = 33/455 (7%)

Query  1    MPEQARWDNIKSLSKLNLGDELPWGDKFKGVSRLIDDAFEAIERENPKLKGVLQRIAGFG  60
            +P +ARW+ I+  +K               ++++ID A  AIE EN  LKGVL +   ++
Sbjct  75   VPKEARWQYINDNAKKP------------EIGQIIDKAMIAIENENESLKGVLPK--EYA  120

Query  61   VPD---EMLTGLIDLFSRTNFTQPMHNGEPVHLQAKDILGHVYEYFLGQFALAEGKKGGQ  117
             P    E L ++IDLF+         +    + + +D+LG+VYEYF+++FA AEGK++G+
Sbjct  121  RPALDKEKLGDIIDLFT--------FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGE  172

Query  118  YFTPKSIVTLIVEMLEPYSGRIYDPAMGSGGFFVQADRFIQAHAGNRNAISVYGQESNST  177
            ++TP SIV L+VEM+EPY GRIYDP  GSGG FVQ++RF++ H G  + I++YGQESN+T
Sbjct  173  FYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPT  232

Query  178  TRKLAVMNMAIRGIPFDFGDKPEDTLLNPLHIDKKMDVVMANPPFNQKEWWNESLANDPR  237
            T+KLA MN+AIRGI  D+G++  DT+ N LH + K D ++ANPPFN  +W +E L +D R
Sbjct  233  TWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYR  292

Query  238  WAYGTPPQGNANFAWLQHMIYHLSPKGKMALLLANGSMSSQTSGEGDIRKNIVQADLVEA  297
            W +G PP+GNAN+AW++HMI  L+P+G  +++LANGSMS+   +E +IRKN+++ DLVE 
Sbjct  293  WQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVEC  352

Query  298  MIALPNQLFTNTQIPACIWIINKAKARKG------EVLFINATQIGYLKDRVLRDFTADD  351
            +++LP QLF +TQIP C+W+I++ K+++G      E+LFI+A +IG +  R L++F+ +D
Sbjct  353  IVTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDED  412

Query  352  IAKISDTYHNWQ--KQNGYENIPAFCYCATLDEIAKNDFVLTAGRYVGAVQEENDGVPFA  409
            I K+++TYH W+  +++ YE+I++FC  A L+E+ +N+++LT+GRYVG  + E+D  PF 
Sbjct  413  IQKVAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFE  472

Query  410  EKMQELTALLNEQFKQGRELEQQIAENLKGLGYGI  444
            +KM+ +T+ L+EQF +++ELE+QI  +L GLGYG+
Sbjct  473  QKMERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

313) WQG_11890 in NC_020515


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  362 bits (1361),  Expect = 2e-101, Method: Compositional matrix adjust.
 Identities = 209/455 (46%), Positives = 326/455 (72%), Gaps = 33/455 (7%)

Query  1    MPEQARWDNIKSLSKLNLGDELPWGDKFKGVSRLIDDAFEAIERENPKLKGVLQRIAGFG  60
            +P +ARW+ I+  +K               ++++ID A  AIE EN  LKGVL +   ++
Sbjct  75   VPKEARWQYINDNAKKP------------EIGQIIDKAMIAIENENESLKGVLPK--EYA  120

Query  61   VPD---EMLTGLIDLFSRTNFTQPMHNGEPVHLQAKDILGHVYEYFLGQFALAEGKKGGQ  117
             P    E L ++IDLF+         +    + + +D+LG+VYEYF+++FA AEGK++G+
Sbjct  121  RPALDKEKLGDIIDLFT--------FKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGE  172

Query  118  YFTPKSIVTLIVEMLEPYSGRIYDPAMGSGGFFVQADRFIQAHAGNRNAISVYGQESNST  177
            ++TP SIV L+VEM+EPY GRIYDP  GSGG FVQ++RF++ H G  + I++YGQESN+T
Sbjct  173  FYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPT  232

Query  178  TRKLAVMNMAIRGIPFDFGDKPEDTLLTPLHIDKKMDVVMANPPFNQKEWWNESLANDPR  237
            T+KLA MN+AIRGI  D+G++  DT+   LH + K D ++ANPPFN  +W +E L +D R
Sbjct  233  TWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLLDDYR  292

Query  238  WAYGTPPQGNANFAWLQHMIYHLSPKGKMALLLANGSMSSQTSGEGDIRKNIVQADLVEA  297
            W +G PP+GNAN+AW++HMI  L+P+G  +++LANGSMS+   +E +IRKN+++ DLVE 
Sbjct  293  WQFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVEC  352

Query  298  MIALPNQLFTNTQIPACIWIINKAKARKG------EVLFINATQIGYMKDRVLRDFTVDD  351
            +++LP QLF +TQIP C+W+I++ K+++G      E+LFI+A +IG M  R L++F+ +D
Sbjct  353  IVTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDED  412

Query  352  IAKISDTYHNWQ--KQNSYENIPAFCYSATLDEIAKNDFVLTAGRYVGAVQEEDDGVPFA  409
            I K+++TYH W+  ++++YE+I++FC  A L+E+ +N+++LT+GRYVG  + E+D  PF 
Sbjct  413  IQKVAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFE  472

Query  410  EKMQELTACLNEQFKQGRELEQQIRKNLAELGFEL  444
            +KM+ +T+ L+EQF +++ELE+QIRK+L  LG+ +
Sbjct  473  QKMERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

314) ZPR_4675 in NC_014041


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  359 bits (1349),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 223/528 (43%), Positives = 359/528 (68%), Gaps = 38/528 (7%)

Query  8    ADINFEQELWKAANELRGAVAENQYKDYILPLIFLKHISERYEMRKDEIKKKLNDQTSDY  67
            A I FE+ LW+AA+ LRG++   +YK+  L LIFLK +S+ +E + +E+K+       D 
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQ-------DP  57

Query  68   YTLDEEEQNYVLEDPDEYLSKNVYIIPEKATFQYLQDNAEQDNIKVLVDEAFDILDETLA  127
            Y+ DEE+Q       DEYL+ N++ +P  A  QY++DNA + +I  ++D A   +++   
Sbjct  58   YA-DEEDQ-------DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIEN---  106

Query  128  ANRPDLKGILPRIFVKSQLTAKQVAGLINLLSNPKLSEKENPDSDILGRVYEYYIGKFAI  187
             +   LKG+LP+ + ++ L   +++++I+L++  K+++ E+   D+LGRVYEY+I+KFA 
Sbjct  107  -ENESLKGVLPKEYARPALDKEKLGDIIDLFTF-KVGDTESRKQDVLGRVYEYFIAKFAS  164

Query  188  AEGSGAGQFFTPGSIVRLLVELIEPYEGKIFDAACGSGGMFVQSLKFLQAHGGDKKNISI  247
            AEG  AG+F+TP+SIV+LLVE+IEPY G+I+D+ CGSGGMFVQS +F++ H G   +I+I
Sbjct  165  AEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAI  224

Query  248  YGQERYDGTLRLCKMNLALRDLSFDV--RLGDSLLQDKFPDLKADFIIVNPPFNVSQWHP  305
            YGQE    T +L KMNLA+R++  D+  R +D++ +D   +LKAD+I+ NPPFN S+W  
Sbjct  225  YGQESNPTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQ  284

Query  306  EDLPENDPRLFGPKEEFTTDGNANYMWMQTFWHHLSDKGTAAVVMANGAMTSNNKGEKNV  365
            E L ++  + FG    +   GNANY W++     L+ +GTA+ V+ANG+M+++ K+E ++
Sbjct  285  ERLLDDYRWQFG----IPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEI  340

Query  366  RQLMVEKNMVDCIVRLPDKLFLTTGIPACIFILSKNRDGKDGIHRKRTGEILFIDTSKMG  425
            R+ ++E+++V+CIV LP++LF +T IP C+ ++S+N+ G++G  + R  EILFID+  +G
Sbjct  341  RKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNK-GQNG-KKERENEILFIDAREIG  398

Query  426  TMESRKLRVFNEQDINKITDTYHAWRNDAERQPELVSGSHNEYKNTDGFSYSATLEEVQN  485
             M SR L+ F+++DI+K+++TYHAWR   ++           Y +  GF   A LEEV+N
Sbjct  399  HMVSRTLKEFSDEDIQKVAQTYHAWRGTNDKP----------YEDIAGFCKVANLEEVKN  448

Query  486  QDYKLTPGIYVGAEAVEDDGIPFEEKMqslqkqlkqqFAEGDRLQKEI  533
            ++Y LTPG YVG   VE+D  PFE+KM+ +  +L +QFA +  L+ +I
Sbjct  449  NEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQI  496

315) TOPB45_0145 in NC_015682


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  359 bits (1347),  Expect = 3e-100, Method: Compositional matrix adjust.
 Identities = 223/508 (44%), Positives = 360/508 (71%), Gaps = 21/508 (4%)

Query  8    FEDKLWKAADKLRKKVEVHEYKYIVLGLIFLRYLSFAFeekrkeieekeakHFPEDLRFK  67
            FE+KLW+AADKLR  ++  EYK + LGLIFL+Y+S +FEEK  E+ +     ++++    
Sbjct  9    FEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQD---PYADE----  61

Query  68   VCEDRDFYMANGTLYVPEKARWDYIRKNANQPNIGEIIDQAIEILENEYPKQLKDVIPKI  127
              ED+D Y+A+  + VP  ARW+YI  NA++P+IG+IID+A+  +ENE    LK+V+PK 
Sbjct  62   --EDQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENE-NESLKGVLPKE  118

Query  128  YSRVNLDSHDFAYLINLFSQIHFGKDHQAKDIFGRIYEYFLGKFTEAEGKKGGEFYTPRS  187
            Y+R  LD + ++ +I+LF+    + + + +D++GR+YEYF++KF+ AEGK++GEFYTP S
Sbjct  119  YARPALDKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSS  178

Query  188  LTRLIVEILDVKEGRIFDPACGSGGFFISALEKLQREGIGNERLSIYAQESKEFVWKVCK  247
            + +L+VE+++   GRI+DP CGSGG F+ +   ++++    + ++IY+QES+   WK+ K
Sbjct  179  IVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAK  238

Query  248  MNLAIRGVEGDI--RWGDSYHDDKFFDLRADYIVSNPPFNDSEWGRDRVKPNDPRFKYGL  305
            MNLAIRG++ D+  R +D++H+D   +L+ADYI++NPPFN S+WG++R+  +D R ++G+
Sbjct  239  MNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERL-LDDYRWQFGI  297

Query  306  PPENNANYVWIQHYIYHLAPNGKAGFVMANGALSVGGVEG-EIRRKIIQDDLIYGIIATP  364
            PP  NANY WI+H I  LAPNG AGFV+ANG++S +G +  EIR+++I++DL+  I++ P
Sbjct  298  PPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLP  357

Query  365  PKMFYTVSLPASLWFIRKTKPEHMK----GKILFIYAKKMYKSISRKQNIFTEEHIAKIV  420
             ++FY+  +P  LWFI + K ++ K      ILFI A+ +   +SR  + F++E+I K+ 
Sbjct  358  GQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVA  417

Query  421  EKFRKFERGEPEEMINEV-GFAKVATLEEVAKNGYVLTPGRYVGI-KLDEEDISFEEKMS  478
            + ++   RG  +   +++ GF KVA LEEV +N Y+LTPGRYVG+  ++E++ +FE+KM 
Sbjct  418  QTYHAW-RGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEPFEQKME  476

Query  479  QYSKELSELLRKEAELTEKIREVFKSLG  506
            + + ELSE + K  EL ++IR  + +LG
Sbjct  477  RITSELSEQFAKSKELEDQIRKSLEGLG  504

316) TREPR_2283 in NC_015578


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  357 bits (1340),  Expect = 1e-99, Method: Compositional matrix adjust.
 Identities = 211/517 (41%), Positives = 345/517 (67%), Gaps = 23/517 (4%)

Query  12   LSLESVLWNCRVVLRNKCNKPTNRDAVLALIFLKFAGDKFEKR----RQEIIAEEGDIPV  67
            +++E  LW+    LR   + +  ++  L+LIFLK+ +D FE +    +Q+  A+E D   
Sbjct  7    IGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQDE  66

Query  68   FLEKPSFYLASNVFYLNETSRWSYIVKNASDDKIAVMLDQAMADIEDKNESLKGALPQRF  127
                   YLA N+F +   +RW YI  NA    I+ ++D+AM  IE+ NESLKG LP+ +
Sbjct  67   -------YLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEY  119

Query  128  FSSLGVNSKDIKSLIDEIN-KISEERFHEKDLIGRVYEYFLQQFAMDEAKEKGEFYTPKA  186
             +  +++   +  +ID +  K+++   + +D++GRVYEYF+ +FA  E+K+ GEFYTP +
Sbjct  120  -ARPALDKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSS  178

Query  187  IVNLIAELIEPYKGRIYDPCCGSGGMFVQSLKFVESHNGNKNNISIFGQESDPDTRRLAK  246
            IV+L+ E+IEPYKGRIYDPCCGSGGMFVQS +FVE H+G  ++I+I+GQES+P T++LAK
Sbjct  179  IVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAK  238

Query  247  MNLAIRGISNNLGDKNASSFTDDRQKDLKVDFIMANPPFNLKAWRGEDELTNDPRWSGYG  306
            MNLAIRGI N+LG++NA +F +D +K+LK D+I+ANPPFN   W G++ L +D RW  +G
Sbjct  239  MNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDW-GQERLLDDYRWQ-FG  296

Query  307  TPPVSNANYAWILHILSKLDVSNgiagfllangalgagaEEYNIRKQLIENDKIEAIIVL  366
             PP +NANYAWI H++SKL  +   +  L   +   +G +E +IRK+LIE+D +E I+ L
Sbjct  297  IPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTL  356

Query  367  PREMFYSTDISVTLWILNNNKKPRTLNKRKLRDRQNEVLFIDLRTWNKNVYEKSYVTFDD  426
            P ++FYST+I+V LW+++NNK      +   ++R+NE+LFID R    ++  ++   F D
Sbjct  357  PGQLFYSTQIPVCLWFISNNK-----GQNGKKERENEILFIDARE-IGHMVSRTLKEFSD  410

Query  427  SQIAAVKKIYTNWQSA-EKGYKNVPELCKSVKITDIRKNDYSLVPSKYIKFIDHDLDID-  484
             +I  V + Y  W+++ +K Y +++ +CK  ++ ++++N+Y L P++Y+ + D + D + 
Sbjct  411  EDIQKVAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDEEP  470

Query  485  YQKEMKRIQKEMKDILKEEKKSQEMLESAFKGIGYGI  521
            +++ M RI  E+ + +   K  ++ +  ++ G+GYG+
Sbjct  471  FEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

317) RB2501_07110 in NC_013222


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  357 bits (1342),  Expect = 7e-100, Method: Compositional matrix adjust.
 Identities = 228/530 (44%), Positives = 359/530 (68%), Gaps = 36/530 (6%)

Query  6    ADINFEKELWNAANELRGAVAENQYKDYVLPLIFLKHMSERYEMRRDELM-DAFEDEASN  64
            A I FE  LW+AA+ LRG++   +YK+  L LIFLK +S+ +E + +EL  D++ DE   
Sbjct  5    ATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADE---  61

Query  65   YYGLSEDDRNYVLEDPDEYLSKNTYIIPKKATWEFLQDNAERDNIKVLVDEAFDTLDETL  124
                         ED DEYL+ N + +PK A W++++DNA + +I  ++D A  ++++  
Sbjct  62   -------------EDQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENE-  107

Query  125  GAFRPELKGILPRIFVKSQLTSRQVGGLINLLSHPKLSVKENPESDILGRVYEYYIGKFA  184
                  LKG+LP+ + ++ L   ++G++I+L++  K++  E+   D+LGRVYEY+I+KFA
Sbjct  108  ---NESLKGVLPKEYARPALDKEKLGDIIDLFTF-KVGDTESRKQDVLGRVYEYFIAKFA  163

Query  185  IAEGSGAGQFFTPGSIVRLMVEMIEPYKGKIFDAACGSGGMFVQSLKFLEAHGGDKRNIS  244
             AEG  AG+F+TP+SIV+L+VEMIEPYKG+I+D+ CGSGGMFVQS +F+E H G   +I+
Sbjct  164  SAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIA  223

Query  245  IYGQERYSGTLRLCKMNLALRDLSFDV--RLGDSLLQDKFPDLEADYILVNPPFNVSQWH  302
            IYGQE  + T +L KMNLA+R++  D+  R +D++ +D   +L ADYIL NPPFN S+W 
Sbjct  224  IYGQESNPTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWG  283

Query  303  PEDLPDKDPRLFGPKEEFTTDGNANYMWMQTFWSHLSNTGTAAVVMANGAMTTGNKGEKN  362
             E L D   + FG    +   GNANY W++   S L+  GTA+ V+ANG+M+T+ K+E +
Sbjct  284  QERLLDDYRWQFG----IPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELE  339

Query  363  VRQHMVDEGMIDAIVRLPDKLFLTTGIPACIFILSKNRDGKDGVHRERKEEILFIDMSKM  422
            +R++++++++++ IV LP++LF +T IP C+ ++S+N+ G++G  +ER +EILFID   +
Sbjct  340  IRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNK-GQNG-KKERENEILFIDAREI  397

Query  423  GRMESRRLRVFDEADLIKAVEAYHAWRNLPNKDNAPYENQDGFCYAATLEEVQKQDYKLT  482
            G+M SR L+ F + D+ K  ++YHAWR   +K   PYE+  GFC  A LEEV++++Y LT
Sbjct  398  GHMVSRTLKEFSDEDIQKVAQTYHAWRGTNDK---PYEDIAGFCKVANLEEVKNNEYILT  454

Query  483  PGIYVgieeeeddgipfeeKLAILKAQLKEQFREGEDLK---RKILDNFD  529
            PG YVG+ + E+D  PFE+K+  + ++L EQF  + +L    RK L+ ++
Sbjct  455  PGRYVGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLG  504

318) SRU_1098 in NC_007677


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  355 bits (1333),  Expect = 3e-99, Method: Compositional matrix adjust.
 Identities = 231/517 (45%), Positives = 358/517 (70%), Gaps = 23/517 (4%)

Query  12   LHADLEIEDELWEAAVDLRGTIAPANYKNYVLPllflrylslryeerreeleeKAEDPDS  71
            L A + +E+ LW+AA  LRG++ +A+YKN  L L+FL+Y+S  +EE+ EEL    +DP  
Sbjct  3    LMATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL---KQDP--  57

Query  72   YYVEEDLREVDEYRQEGAFLIPEEARWDYLVEHAQDDDIKVKVDRAMELLQQRYDDLEGV  131
             Y +E+  + DEY  E  F +P EARW+Y+ ++A+  +I   +D+AM  +++  + L GV
Sbjct  58   -YADEE--DQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGV  114

Query  132  LPPMYAGSNLTQENLANLINLFSRDIFTGQGKQQADVLGRVYEYFITNFADTEGSKGGEF  191
            LP  YA + L +E+L+++I+LF+  +   ++++Q DVLGRVYEYFI++FA +EG ++GEF
Sbjct  115  LPKEYARPALDKEKLGDIIDLFTFKVGDTESRKQ-DVLGRVYEYFIAKFASAEGKNAGEF  173

Query  192  FTPRSVVQALVAMLEPEDGSKIFDPACGSGGMFVQAAEFTDDKES----LSFYGQESVDQ  247
            +TP S+V+ LV M+EP  G +I+DP CGSGGMFVQ+  F +  ++    +++YGQES   
Sbjct  174  YTPSSIVKLLVEMIEPYKG-RIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPT  232

Query  248  NLRLCKMNLLMHDLQGDLE--SGDSLLNDKHEGLKADYVIANPPFNIRSWGADEIPGDDP  305
              +L KMNL +++++ DL   ++D++ ND H GLKADY++ANPPFN   WG + +  DD 
Sbjct  233  TWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERLL-DDY  291

Query  306  RLQVGDRRLQPTDSNANYMWMMHFLHHLEDGGTAGYVMANGSMTTSLTNEEPVRKALVDE  365
            R Q G     P  +NANY W+ H +  L   GTAG+V+ANGSM+TS  +E  +RK L+++
Sbjct  292  RWQFG----IPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQ  347

Query  366  RFVDCIVQLPDKLFFGTGIPACLWFLSRNRDGSNGERERSDEILFLDGRDMGELPERAKR  425
             +V+CIV LP++LF++T IP CLWF+S N+ G NG +ER +EILF+D+R++G++  R+ +
Sbjct  348  DLVECIVTLPGQLFYSTQIPVCLWFISNNK-GQNGKKERENEILFIDAREIGHMVSRTLK  406

Query  426  VLTDDEIGRLETAYRNFRMPDEKV-EEEPGFSGVASLEEVRSNDYKLTPGLYVGFEDDDG  484
             ++D++I ++  +Y+  R  ++K  E+ +GF  VA+LEEV++N+Y LTPG YVG+ D + 
Sbjct  407  EFSDEDIQKVAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEE  466

Query  485  DRVPFEVKMPQLVDELEDQFAESERLQSQIEKQLADL  521
            D  PFE KM ++  EL +QFA S  L+ QI K L +L
Sbjct  467  DEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGL  503

319) HsdM2 in NC_015844


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  353 bits (1326),  Expect = 1e-98, Method: Compositional matrix adjust.
 Identities = 218/533 (41%), Positives = 349/533 (66%), Gaps = 35/533 (6%)

Query  1    MAKADIDFEKELWDAANELRGAVSENNYKNYILPLVFLKHLSERFDIVKEELENTLNEPS  60
            +  A I+FE  LW+AA+ LRG++   +YKN  L L+FLK +S+ F+   EEL +   +P 
Sbjct  2    LLMATIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQ---DP-  57

Query  61   SEYYTTNHEEKDYVLSDPDEYRSRNTFMIPKTASWQYLKDNAEQDDIKVKVDDAFDTIQD  120
               Y+ ++++ +Y+        + N F +PK A WQY++DNA + +I   +D A  +I++
Sbjct  58   ---YADEEDQDEYL--------AENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIEN  106

Query  121  LLTAYNPQLNNLLPRIFVKSELSAKQTGGIINLLSHPKFSEKENPESDILGRIYEYYIGR  180
                 N  L+ +LP+ + ++ L   + G+II+L++  K ++ E+   D+LGR+YEY+I++
Sbjct  107  E----NESLKGVLPKEYARPALDKEKLGDIIDLFTF-KVGDTESRKQDVLGRVYEYFIAK  161

Query  181  FAMAEGSGAGQFFTPGSIVRLLVELLEPYKGRIFDPACGSGGMFVQSLKFIKEHGGNKSD  240
            FA AEG  AG+F+TP+SIV+LLVE++EPYKGRI+DP CGSGGMFVQS +F+  H G   D
Sbjct  162  FASAEGKNAGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDD  221

Query  241  ISIYGQEMTAQT--lrlclmnlllrnlSFDIKLGNSLLDDKFPDLKADFVIANPPFNVSN  298
            I+IYGQE  + T  L    + +   +  ++ + ++++ +D   +LKAD+++ANPPFN S+
Sbjct  222  IAIYGQESNPTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASD  281

Query  299  WHPEDLPENDTRLFGPREEFTTDGSANYMWMQTFWHHLNDRGTAGVVMANGAMTSNTKGE  358
            W  E L ++  + FG    +   G+ANY W++     L   GTAG V+ANG+M+++ K+E
Sbjct  282  WGQERLLDDYRWQFG----IPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDE  337

Query  359  KNVRQYMVDKGMIDCIVRMPDKLFLTTGIPACLFILSRNRDGKDGEHRERMNEILFIDAA  418
             ++R+ ++++++++CIV +P++LF +T IP CL ++S N+ G++G  +ER NEILFIDA 
Sbjct  338  LEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNK-GQNG-KKERENEILFIDAR  395

Query  419  KMGKMASRKLRVFEDADIKKIADAYHAYRTVPEALEGRSLDPYQDELGFCKAATVEEVQK  478
             +G M SR L+ F D DI+K+A++YHA R   +        PY+D  GFCK A +EEV++
Sbjct  396  EIGHMVSRTLKEFSDEDIQKVAQTYHAWRGTND-------KPYEDIAGFCKVANLEEVKN  448

Query  479  QDYKLTPGIYVGTEAEEDDGIPFEEKMETLKATLLAQFEKGEKLKKQIVENFD  531
            ++Y LTPG YVG    E+D  PFE+KME + + L  QF K+  L  QI  +++
Sbjct  449  NEYILTPGRYVGLADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLE  501

320) CDHC03_2198 in NC_016787


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  339 bits (1271),  Expect = 3e-94, Method: Compositional matrix adjust.
 Identities = 211/526 (41%), Positives = 336/526 (64%), Gaps = 28/526 (5%)

Query  10   LTLEQVLWNCRVALRSVGSTEKNRDAVISLVFLKFAGDKFAKQREALKTQ-YGDIPAFLE  68
            + +E+ LW+    LR+   +   ++  ++L+FLK+ +D F  + E LK + Y+D     E
Sbjct  7    IGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADE----E  62

Query  69   KPSFYNADNVFYLNESSRWDFLVAHAGANDIAILIDNAMADIEKNNPSLGGALPQGLFAT  128
                Y A+N+F +   +RW+++  +A   +I+ +ID+AM  IE++N SL G LP+  +A 
Sbjct  63   DQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKE-YAR  121

Query  129  LGASPASIKSLIDEIG-KINQQRFPEEDLIGRVYEYFLQSYAAAGTKEDGEFYTPSSIVK  187
             +     +  +ID +  K+ +     +D++GRVYEYF+  +A+A  K+ GEFYTPSSIVK
Sbjct  122  PALDKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVK  181

Query  188  LIAEIIEPYKGTVYDPCCGSGGMFVQSMKFIERHHGNKLNISILGQESKADTWRLCKMNL  247
            L+ E+IEPYKG +YDPCCGSGGMFVQS +F+E+H+G   +I+I GQES++ TW+L KMNL
Sbjct  182  LLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQESNPTTWKLAKMNL  241

Query  248  AARGISYDLGEKNASTFTDDQHLDRKVNFIMANPPFNLKGWRGEDELTKDSRWAGYPVVP  307
            A RGI  DLGE+NA TF +D H + K ++I+ANPPFN  +W G++ L  D RW  +  +P
Sbjct  242  AIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDW-GQERLLDDYRWQ-FG-IP  298

Query  308  PVANANYAWILHMISKLDVNDgiagfllangalnagDDEAKIRKEIIERDLIEAIIVLPR  367
            P +NANYAWI HMISKL  N+  +  L   +   +G DE  IRK++IE+DL+E I+ LP 
Sbjct  299  PKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPG  358

Query  368  DMFYTTDISVTLWVINMNKKAGRHGDRELRDRTGEILFMDLRRWNENIDIIQIDKNKRKK  427
            ++FY+T+I+V LW I+ NK     G+   ++R  EILF+D R         +I+    + 
Sbjct  359  QLFYSTQIPVCLWFISNNK-----GQNGKKERENEILFIDAR---------EIGHMVSRT  404

Query  428  KVAFTDEQIQQAKDIYNAWQDADRSKYEDVPELCKSASLEGDEGIRARGYTLAPSKYIEF  487
               F+DE+IQ+  + Y+AW++++   YED++ +CK A+L   E ++   Y L+P++Y+ +
Sbjct  405  LKEFSDEDIQKVAQTYHAWRGTNDKPYEDIAGFCKVANL---EEVKNNEYILTPGRYVGL  461

Query  488  IDHDLDID-YETEMKRIQKEMTKLLQEQRESQAMLEAAFKGIGYDI  532
             D + D + +E  M RI  E++  +   +E +  +  ++ G+GY++
Sbjct  462  ADVEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGYGV  507

321) MJECL42 in NC_001732


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  324 bits (1215),  Expect = 7e-90, Method: Compositional matrix adjust.
 Identities = 211/522 (41%), Positives = 348/522 (67%), Gaps = 30/522 (5%)

Query  45   TPEFENQLWKVADKLRKKMEVHQYKYVVLGLIFLRALTCRFYERRKEIEEELSNPNSELY  104
            T  FE++LW+ ADKLR  M+  +YK V LGLIFL+ ++  F       EE   + + + Y
Sbjct  6    TIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSF-------EEKYEELKQDPY  58

Query  105  TEDPELRKMILEDEDFYLSEGVLYLPKETRWDYFVENVMSPNIGEIIDTAIEILEEKYPD  164
            +++        ED+D YL+E ++ +PKE+RW+Y+ +N   P+IG+IID A+  +E+   +
Sbjct  59   ADE--------EDQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENE-NE  109

Query  165  RLKDVIPKIYAQSPLDNHDYSYLINKFSEISFGKEHRVKDVFGRIYEYFLGKFTEVEGKL  224
             LK+V+PK YA+++LD++  + +I+ F+    + E R +DV+GR+YEYF++KF+  EGK 
Sbjct  110  SLKGVLPKEYARPALDKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKN  169

Query  225  GGKFYTPRSLTKLIVDVLDVKGGSIFDPACGSGGFFVSALEKLEREGIDINELSIYGQDS  284
            +G FYTP S+ KL+V++++   G I+DP CGSGG FV +   +E++   +++++IYGQ+S
Sbjct  170  AGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQES  229

Query  285  DPMAYRLTKMNLIIRGAEGDI--RIDDSYHDDKFMDMTFDYVVANPPFNDSEWDANRIKP  342
            +P + +L+KMNL IRG + D+  R  D++H+D   ++  DY++ANPPFN S+W+ +R+  
Sbjct  230  NPTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERL-L  288

Query  343  DDPRLRIGNKKVPVPPNGNANYMWILHFIYHTAPNGKAGFVMANGALSAGNVEG-EIRKA  401
            DD R ++G     +PP+GNANY WI H I   APNG AGFV+ANG++S++  +  EIRK 
Sbjct  289  DDYRWQFG-----IPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKN  343

Query  402  IIENDLVYGIVACPPKLFYNVSLPVSLWFIRKEKPDYMK----GKVLFINAKNLYKQISR  457
            +IE+DLV  IV+ P +LFY+  +PV LWFI ++K +  K      +LFI+A+++   +SR
Sbjct  344  LIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSR  403

Query  458  RQNILTEEHIKKIVDKFRMFESGEDEDKINELGFAKVATIDEIAKNGYVLTPGRYVGV-K  516
              + +++E+I+K+ + ++   + +D    +  GF KVA ++E+ +N Y+LTPGRYVG+  
Sbjct  404  TLKEFSDEDIQKVAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLAD  463

Query  517  IEDDGIPFEVkmkeyseelkklldeeeklrnkVKEILDALGF  558
            +E+D  PFE KM   + EL   +     L ++++  L++LG+
Sbjct  464  VEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSLEGLGY  505

322) TherJR_0899 in NC_014152


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  315 bits (1181),  Expect = 4e-87, Method: Compositional matrix adjust.
 Identities = 201/491 (41%), Positives = 325/491 (67%), Gaps = 37/491 (7%)

Query  1    MPSINNEIEKKLWNAADQLRANSKLKASEYSVPVLGLIFLRFADQRFSAAEKELVEKAKV  60
            M++I   +E KLW+AAD+LR++  + A+EY    LGLIFL++  + F     EL + +  
Sbjct  4    MATIG--FEEKLWQAADKLRGS--MDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYA  59

Query  61   SGSRRAIGKADYQARGVMYLPEQAKYSYLLKLPEGENIGKAVNEAMKAIEAENEDLKDVL  120
                   ++ +Y A  +  +P +A+  Y+   +   +IG+ ++ AM AIE ENE LK+VL
Sbjct  60   DEE----DQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVL  115

Query  121  PKTYTR--LDNDTLIALLKIFSEIPMDVEG---DVFGNVYEYFLGEFARSEGQRGGEFYT  175
            PK Y+R  LD++ L  ++ +F+    D E+   DV+G VYEYF++ FA +EG+ +GEFYT
Sbjct  116  PKEYARPALDKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYT  175

Query  176  PTSLVKLIVEVIEPYKGRILDPACGSGGMFVQSARFVQNHKKNPSSEISIYGQEKVAETV  235
            P+S+VKL+VE+IEPYKGRI DP CGSGGMFVQS RFV++H +    +I+IYGQE  + T 
Sbjct  176  PSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKH-QGRLDDIAIYGQESNPTTW  234

Query  236  RLCKMNLAVHGLSGDI--RQANTYYENVHNCINRFDFVMANPPFNVDGVDKEKIKDDPRY  293
            +L KMNLA++G+  D+  R+A+T+ +++H+ ++  D+++ANPPFN  + ++E++ DD R 
Sbjct  235  KLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKA-DYILANPPFNASDWGQERLLDDYRW  293

Query  294  PFGLPSNDNANYIWIQEFYSALNDKGRAGFVMANSASDARG-SELEIRKKLIQDKVVDVM  352
             FG+P+++NANY WI++  S L  +G AGFV+AN++  + G  ELEIRK+LI++ +V+ +
Sbjct  294  QFGIPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECI  353

Query  353  IAIGPNFFYTVTLPCTLWFFDKGKRQT---ERGDKVLFIDARNIYRQVDRAHREFTPEQI  409
            +++  ++FY+  +P  LWF+ + K Q    ER + +LFIDAR+I + V R+ +EF+ E+I
Sbjct  354  VTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDI  413

Query  410  EFIANIVRLYRGEPVETASGSEDMLKEHFPEGKYVDIPGLCKVTTIAEIEAQGWSLNPGR  469
            + +A+  +  RG                  +  Y DI+G+CKV+ + E+  +   L PGR
Sbjct  414  QKVAQTYHAWRGT----------------NDKPYEDIAGFCKVANLEEVKNNEYILTPGR  457

Query  470  YVGVAQKDEED  480
            YVG+A+ +E++
Sbjct  458  YVGLADVEEDE  468

323) Mbar_A2666 in NC_007355


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  309 bits (1159),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 193/472 (41%), Positives = 320/472 (68%), Gaps = 25/472 (5%)

Query  9    ENRLWDVANELRANSGLKASEYSVPVLGLIFLRYaefkfakaekelklelenesssrrrk  68
            E++LW+ A+ LR+  ++ A+EY    LGLIFL+Y    F     ELK +   +       
Sbjct  10   EEKLWQAADKLRG--SMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEE-----  62

Query  69   keISKIDFQAKGVLYLPKKARYSYLLNLPESENIGKAVNDAMEAIEAENPELTDTLPKNY  128
                + ++ A  ++ +PK AR  Y+ + +   +IG+ ++ AM AIE EN  L + LPK+Y
Sbjct  63   ---DQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEY  119

Query  129  T--SFENDLLVALLKAFKL----PPEIKGDAFGKIYEYFLGKFAMAEGQKGGEFFTPTSL  182
            +  +++++ L  ++  F +        K D +G++YEYF++KFA AEG+++GEF+TP+S+
Sbjct  120  ARPALDKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSI  179

Query  183  VRLIVEIIEPYHGRILDPACGSGGMFVQSAHFVENQHKEASSEISIYGQEKVADTVRLCK  242
            V+L+VE+IEPY GRI DP CGSGGMFVQS +FVE+ H+    +I+IYGQE  + T +L K
Sbjct  180  VKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEK-HQGRLDDIAIYGQESNPTTWKLAK  238

Query  243  MNLAVHGLSGDI--KEGNTYYEDIHNSVDAFDFVMANPPFNVKKVDFEKVKGDKRVPLGT  300
            MNLA++G+  D+  ++++T+ +D+H+++ A D+++ANPPFN    + E++ +D R  +G 
Sbjct  239  MNLAIRGIDNDLGERNADTFHNDLHKGLKA-DYILANPPFNASDWGQERLLDDYRWQFGI  297

Query  301  PSTDNANYLWIQHFWSTLNEKGRAGFVMANSASDARGTEA-EIRKQLIEGNAVDVMVSIG  359
            P+ +NANY WI+H  S L  +G AGFV+AN++  + G +  EIRK+LIE + V+ +V++ 
Sbjct  298  PPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLP  357

Query  360  SNFFYTVTLPCTLWFLDKGKARTSRKDK---ILFIDAREIFTQVDRAHREFTGEQIEKLA  416
            +++FY+  +P  LWF+ + K++ ++K++   ILFIDAREI   V R+ +EF++E+I+K+A
Sbjct  358  GQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVA  417

Query  417  GIVRSYREKEGSEPYEDVKGLCKVATLDEVREQGYSLNPGRYVGVAEAVEED  468
               ++ R  ++  PYED+ G+CKVA L+EV+++ Y L PGRYVG+A+  E++
Sbjct  418  QTYHAWRGTNDK-PYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEEDE  468

324) Slip_1127 in NC_014220


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  308 bits (1153),  Expect = 5e-85, Method: Compositional matrix adjust.
 Identities = 205/485 (43%), Positives = 320/485 (66%), Gaps = 34/485 (7%)

Query  9    EKKLWNAADQLRANSKLKASEYSVPVLGLIFLRFADHKFSMaekelakkakaGSRRVIGK  68
            E KLW+AAD+LR++  + A+EY    LGLIFL++  + F     EL + + A+     ++
Sbjct  10   EEKLWQAADKLRGS--MDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEE---DQ  64

Query  69   ADYQARGVMYLPEQARYSYLLKLPEGENIGKAVNEAMKAIEAENEDLKDVLPKTYTR--L  126
             +Y A  +  +P +AR  Y+   +   +IG+ ++ AM AIE ENE LK+VLPK Y+R  L
Sbjct  65   DEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPAL  124

Query  127  DNDTLIALLKTFSEIPMDVEG---DVFGNVYEYFLGEFARSEGQRGGEFYTPTSLVKLIV  183
            D++ L  ++  F+    D E+   DV+G VYEYF++ FA +EG+ +GEFYTP+S+VKL+V
Sbjct  125  DKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLV  184

Query  184  EVIEPYRGRILDPACGSGGMFVQSARFVQNHKKNPSSEISIYGQEKVAETVRLCKMNLAV  243
            E+IEPY+GRI DP CGSGGMFVQS RFV++H +    +I+IYGQE  + T +L KMNLA+
Sbjct  185  EMIEPYKGRIYDPCCGSGGMFVQSERFVEKH-QGRLDDIAIYGQESNPTTWKLAKMNLAI  243

Query  244  HGLSGDI--RQANTYYENVHNCIGRFDFVMANPPFNVDGVDKEKIKDDPRYPFGLPTVDN  301
            +G+  D+  R+A+T+ +++H+ + + D+++ANPPFN  + ++E++ DD R  FG+P  +N
Sbjct  244  RGIDNDLGERNADTFHNDLHKGL-KADYILANPPFNASDWGQERLLDDYRWQFGIPPKGN  302

Query  302  ANYIWIQEFYSALNDTGRAGFVMANSASDARG-SELEIRKKLIQDRVVDVMITIGPNFFY  360
            ANY WI++  S L   G AGFV+AN++  + G  ELEIRK+LI++ +V+ ++T+  ++FY
Sbjct  303  ANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFY  362

Query  361  TVTLPCTLWFFDKGKRQT---ERGNKVLFIDARNIYRQVDRAHREFTPEQIEFIANIVRL  417
            +  +P  LWF+ + K Q    ER N +LFIDAR+I + V R+ +EF+ E+I+ +A+  + 
Sbjct  363  STQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHA  422

Query  418  YRGEPVETVNGSDEMLEDKFPEGKYVDVPGLCKVATIEEIEAQGWSLNPGRYVGVAQKEE  477
             RG                  +  Y D++G+CKVA +EE+  +   L PGRYVG+A+ EE
Sbjct  423  WRGT----------------NDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADVEE  466

Query  478  EDYDF  482
            ++  F
Sbjct  467  DEEPF  471

325) Metvu_0940 in NC_013407


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  305 bits (1144),  Expect = 3e-84, Method: Compositional matrix adjust.
 Identities = 199/492 (41%), Positives = 328/492 (67%), Gaps = 30/492 (6%)

Query  10   TPEFENQLWKVADKLRKKMEVHQYKYVVLGLIFLRALTCRFYERRKEIEDELSNPNSELY  69
            T  FE++LW+ ADKLR  M+  +YK V LGLIFL+ ++  F       E+   + + + Y
Sbjct  6    TIGFEEKLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSF-------EEKYEELKQDPY  58

Query  70   TEDPELRKMILEDKDFYLSEGVLYLPKETRWDYFVENVMSPNIGEIIDTAIEILEEKYPD  129
            +++        ED+D YL+E ++ +PKE+RW+Y+ +N   P+IG+IID A+  +E+   +
Sbjct  59   ADE--------EDQDEYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENE-NE  109

Query  130  RLKNVIPKIYAQSPLDNHDYAYLINKFSEISFGKEYKVKDVFGRIYEYFLGKFTEVEGKL  189
             LK V+PK YA+++LD++  + +I+ F+    + E + +DV+GR+YEYF++KF+  EGK 
Sbjct  110  SLKGVLPKEYARPALDKEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKN  169

Query  190  GGKFYTPRSLTKLIVDVLDIKGGTIFDPACGSGGFFVSALEKLEGEGIDINELSIYGQDS  249
            +G FYTP S+ KL+V++++   G I+DP CGSGG FV +   +E +   +++++IYGQ+S
Sbjct  170  AGEFYTPSSIVKLLVEMIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGRLDDIAIYGQES  229

Query  250  DPMAYRLTKMNLIIRGAEGDI--RIGDSYHDDKFMNMVFDYVVANPPFNDSEWDSNRIKP  307
            +P + +L+KMNL IRG + D+  R +D++H+D    +  DY++ANPPFN S+W+ +R+  
Sbjct  230  NPTTWKLAKMNLAIRGIDNDLGERNADTFHNDLHKGLKADYILANPPFNASDWGQERL-L  288

Query  308  DDPRLRIGnkkvpvppnnnANYMWILHFIYHTKSNGKAGFVMANGALSAGNVEG-EIRKA  366
            DD R ++G     +PP+ NANY WI H I    +NG AGFV+ANG++S++  +  EIRK 
Sbjct  289  DDYRWQFG-----IPPKGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKN  343

Query  367  IIENDLVYGIVACPPKLFYNVSLPVSLWFIRKEKPDYMK----GKVLFINAKNLYKQISR  422
            +IE+DLV  IV+ P +LFY+  +PV LWFI ++K +  K      +LFI+A+++   +SR
Sbjct  344  LIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSR  403

Query  423  RQNILTEEHINKIVDKFKMLESGENEEKINELGFAKVATIDEIAKNGYVLTPGRYVGV-K  481
              + +++E+I+K+ + +    + ++    +  GF KVA ++E+ +N Y+LTPGRYVG+  
Sbjct  404  TLKEFSDEDIQKVAQTYHAWRGTNDKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLAD  463

Query  482  IEDDGIPFEVKM  493
            +E+D  PFE KM
Sbjct  464  VEEDEEPFEQKM  475

326) Tmz1t_0004 in NC_011662


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  304 bits (1138),  Expect = 8e-84, Method: Compositional matrix adjust.
 Identities = 205/480 (43%), Positives = 316/480 (66%), Gaps = 37/480 (7%)

Query  8    LETRLWAAADQLWANTGLKPSEFSNPVLGLIFLRYAEKRFHEAEAKLIESGLGVSEIEKF  67
            +E +LW AAD+L    ++ ++E+ N  LGLIFL+Y    F+E    L +   +  E +  
Sbjct  9    FEEKLWQAADKL--RGSMDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQD-  65

Query  68   DYQAEGALYLPDNAHFSYLLDLAEGQDLGKavneamaaveaeneeLKGVLPRSYGR--LP  125
            +Y AE  + +P +A+  Y+ D A   ++G+ ++ AM A+E ENE LKGVLP+ Y+R  L 
Sbjct  66   EYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALD  125

Query  126  NTVLVELLRVLN-GLGEVEG---DAFGKIYEYFLGKFALAEGQKGGVFYTPTSIVKLIVE  181
            +  L +++ ++   +G+ E+   D +G++YEYF++KFA AEG+++G FYTP+SIVKL+VE
Sbjct  126  KEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVE  185

Query  182  IIEPFHGKIFDPACGSGGMFVQSAQFVSRHQKRAAEELTVYGTEKANDTVKLAKMNLAVH  241
            +IEP+ G+I+DP CGSGGMFVQS +FV +HQ R  +++++YG E    T KLAKMNLA++
Sbjct  186  MIEPYKGRIYDPCCGSGGMFVQSERFVEKHQGR-LDDIAIYGQESNPTTWKLAKMNLAIR  244

Query  242  GLSGDI--RESNTYYEDPHKAVVGNTGKFDFVMANPPFNVSGVDKERVKDDPRFPFGIPT  299
            G+  D+  R+++T+ +D HK++     K D+++ANPPFN S+ ++ER+ DD R  FGIP 
Sbjct  245  GIDNDLGERNADTFHNDLHKGL-----KADYILANPPFNASDWGQERLLDDYRWQFGIPP  299

Query  300  TDNANYLWIQHFYTALNERGRAGFVMANSAGDARGT-ELEIRKKLIQTGGVDVIVSVGSN  358
             +NANY WI+H  + L   G AGFV+AN++  + G  ELEIRK+LI+ + V+ IV++ ++
Sbjct  300  KGNANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQ  359

Query  359  FFYTVTLPCTLWFFDRAK---AKGERKDEVLFIDARGTYRQVSRAIRDFLPEQIEFLANI  415
            +FY+  +P  LWF+   K   +K ER +E+LFIDAR   + VSR++++F  E+I+ +A+ 
Sbjct  360  LFYSTQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQT  419

Query  416  VRLWRGEAVEIEAGSQEMLRQQFPEGGYRDIAGVCKVATLAEIEAQGWSLNPGRYVGVAD  475
             + WRG                  +  Y DIAG CKVA L E+  +   L PGRYVG+AD
Sbjct  420  YHAWRGTN----------------DKPYEDIAGFCKVANLEEVKNNEYILTPGRYVGLAD  463

327) Deipr_1486 in NC_015161


> AB462393|41|G34|229002235|BAH57701.1|Staphylococcus_aureus_PM1|-|33172..34695|hsdM|-|type 
I restriction-modification system 
DNA methylase
Length=507

 Score =  296 bits (1107),  Expect = 3e-81, Method: Compositional matrix adjust.
 Identities = 197/484 (41%), Positives = 320/484 (67%), Gaps = 37/484 (7%)

Query  9    ALEKRLWDAADQMRANSKLKSHEYSTPVLGLVFLSYADYRFQNKAEEIGLDA-----DPD  63
            ++E +LW+AAD++R++  + + EY    LGL+FL Y    F++K EE+  D+     D D
Sbjct  8    GFEEKLWQAADKLRGS--MDAAEYKNVALGLIFLKYVSDSFEEKYEELKQDPYADEEDQD  65

Query  64   DFMAEGVLYVPEKARYSELLKLPeganigaaineamnaieaQNPDLTGALPKMYNR--LD  121
            +++AE ++ VP  AR   +   +  ++IG  I+ AM AIE +N  L G LPK Y R  LD
Sbjct  66   EYLAENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALD  125

Query  122  NSLLAGMLKSFTFS-DLTAGLQGDAFGRVFEYFLGEFARNEGSKGGEFYTPQSLVKLMVE  180
            +  L++++  FTF  + T + + D +GRV+EYF++ FA  EG ++GEFYTP S+VKL+VE
Sbjct  126  KEKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKLLVE  185

Query  181  IMEPFHGKIYDPACGSGGMFVQSARFVEQHQRSAADDLSVYGQEKTSETARLARMNLAIH  240
            ++EP+ G+IYDP CGSGGMFVQS RFVE+HQ +  DD+++YGQE  + T +LA+MNLAI+
Sbjct  186  MIEPYKGRIYDPCCGSGGMFVQSERFVEKHQ-GRLDDIAIYGQESNPTTWKLAKMNLAIR  244

Query  241  GLSGDI--KQGNTFYEDLHASPGKFDFAMANPPFNVKGVDKERISNDQKRLPYGTPSTDN  298
            G+  D+  ++++TF +DLH +  K D+ +ANPPFN  + ++ER+ +D ++  +G P+ +N
Sbjct  245  GIDNDLGERNADTFHNDLHKGL-KADYILANPPFNASDWGQERLLDDYRW-QFGIPPKGN  302

Query  299  ANYLWLQYIASSLNSGGRAGVVMANSASDARGSEQL-IRQRMIEDGVVDVMVATSSNLFY  357
            ANY W++ + S L + G AG V+AN++  + G ++L IR+ +IE+++V+ +V+ +++LFY
Sbjct  303  ANYAWIEHMISKLAPNGTAGFVLANGSMSTSGKDELEIRKNLIEQDLVECIVTLPGQLFY  362

Query  358  TVTLPATLWFM--DKGKKG-TPREDTVLFIDARNTYQQVTRAIRELRDDQVELLANIVNL  414
            +  +P  LWF+  +KG++G   RE+ +LFIDAR+  + V+R+++E+ D++++ +A+  + 
Sbjct  363  STQIPVCLWFISNNKGQNGKKERENEILFIDAREIGHMVSRTLKEFSDEDIQKVAQTYHA  422

Query  415  YRGEADKLDDKHGTAAKMTELFPDGQYRDIAGLCKVATRAEIAAQGWSLNPGRYVGVEAR  474
             RG  DK                   Y DIAG+CKVA   E+  +   L PGRYVG+   
Sbjct  423  WRGTNDK------------------PYEDIAGFCKVANLEEVKNNEYILTPGRYVGLADV  464

Query  475  AADD  478
              D+
Sbjct  465  EEDE  468