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Homologs of hsdR gene of NC_007168_R1

188

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) hsdR
( YP_251977.1 )

type I restriction-modification system restriction subunit

NC_007168
(Staphylococcus haemolyticus JCSC1435)

0.0

100

2) M013TW_0061
( YP_005296531.1 )

Type I restriction-modification system,restriction subunit R

NC_016928
(Staphylococcus aureus M013)

0.0

3) hsdR
( YP_008584154.1 )

type I restriction-modification system endonuclease

NC_022442
(Staphylococcus aureus SA957)

0.0

4) SAEMRSA15_00470
( YP_006236424.1 )

type I restriction-modification system endonuclease

NC_017763
(Staphylococcus aureus HO 5096 0412)

0.0

5) SAA6159_00056
( YP_005738228.1 )

type I site-specific deoxyribonuclease restriction subunit

NC_017338
(Staphylococcus aureus JKD6159)

0.0

6) hsdR
( YP_005754071.1 )

type I restriction-modification system endonuclease

NC_017349
(Staphylococcus aureus LGA251)

0.0

7) SAMSHR1132_00490
( YP_005324572.1 )

type I restriction-modification system endonuclease (fragment)

NC_016941
(Staphylococcus aureus MSHR1132)

0.0

8) SABB_01782
( YP_008167216.1 )

Type I restriction enzyme HindVIIP R-like protein

NC_021670
(Staphylococcus aureus Bmb9393)

0.0

9) SAT0131_02861
( YP_005753900.1 )

Type I restriction-modification system endonuclease -like proteinue

NC_017347
(Staphylococcus aureus T0131)

0.0

10) Clocl_3622
( YP_005048015.1 )

HsdR family type I site-specific deoxyribonuclease

NC_016627
(Clostridium clariflavum DSM 19732)

0.0

11) Desdi_0311
( YP_007219255.1 )

HsdR family type I site-specific deoxyribonuclease

NC_019903
(Desulfitobacterium dichloroeliminans LMG P-21439)

0.0

12) hsdR
( YP_001681587.1 )

type i site-specific deoxyribonuclease, hsdr family

NC_010337
(Heliobacterium modesticaldum Ice1)

0.0

13) DCF50_p1408
( YP_006913399.1 )

Type I restriction-modification system, restriction subunit R

NC_018867
(Dehalobacter sp. CF)

0.0

14) Amico_0451
( YP_003553316.1 )

HsdR family type I site-specific deoxyribonuclease

NC_014011
(Aminobacterium colombiense DSM 12261)

0.0

15) Cyan7822_0695
( YP_003886002.1 )

HsdR family type I site-specific deoxyribonuclease

NC_014501
(Cyanothece sp. PCC 7822)

0.0

16) hsdR1
( YP_001620584.1 )

type I site-specific restriction-modification system, R (restriction) subunit

NC_010163
(Acholeplasma laidlawii PG-8A)

0.0

17) Acid345_3755
( YP_592829.1 )

HsdR family type I site-specific deoxyribonuclease

NC_008009
(Candidatus Koribacter versatilis Ellin345)

0.0

18) hsdR
( YP_004570379.1 )

type I site-specific deoxyribonuclease

NC_015634
(Bacillus coagulans 2-6)

0.0

19) Cylst_5220
( YP_007149934.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_019757
(Cylindrospermum stagnale PCC 7417)

0.0

20) F7308_0305
( YP_004646833.1 )

type I restriction-modification system, R subunit

NC_015696
(Francisella sp. TX077308)

0.0

21) hsdR
( YP_004649007.1 )

type I site-specific deoxyribonuclease

NC_015697
(Lactobacillus reuteri SD2112)

0.0

22) Calni_0580
( YP_004050655.1 )

type I site-specific deoxyribonuclease, hsdr family

NC_014758
(Calditerrivibrio nitroreducens DSM 19672)

0.0

23) Desgi_1004
( YP_007944218.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_021184
(Desulfotomaculum gibsoniae DSM 7213)

0.0

24) MM_2204
( NP_634228.1 )

hypothetical protein

NC_003901
(Methanosarcina mazei Go1)

0.0

25) KN400_0449
( YP_006889493.1 )

type I restriction endonuclease, HsdR family

NC_017454
(Geobacter sulfurreducens KN400)

0.0

26) NIS_1703
( YP_001357166.1 )

type I restriction-modification system, R subunit

NC_009662
(Nitratiruptor sp. SB155-2)

0.0

27) hsdR1
( YP_005268567.1 )

type I restriction-modification system restriction subunit HsdR1

NC_016894
(Acetobacterium woodii DSM 1030)

0.0

28) Nhal_0892
( YP_003526454.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_013960
(Nitrosococcus halophilus Nc 4)

0.0

29) Veis_3131
( YP_997880.1 )

HsdR family type I site-specific deoxyribonuclease

NC_008786
(Verminephrobacter eiseniae EF01-2)

0.0

30) Syn6312_0882
( YP_007060633.1 )

HsdR family type I site-specific deoxyribonuclease

NC_019680
(Synechococcus sp. PCC 6312)

0.0

31) Turpa_2677
( YP_006440822.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_018020
(Turneriella parva DSM 21527)

0.0

32) Lreu_0874
( YP_001271474.1 )

HsdR family type I site-specific deoxyribonuclease

NC_009513
(Lactobacillus reuteri DSM 20016)

0.0

33) LAR_0819
( YP_001841815.1 )

type I restriction-modification system restriction subnit

NC_010609
(Lactobacillus reuteri JCM 1112)

0.0

34) SYN_00497
( YP_462086.1 )

type I restriction-modification system restriction subunit

NC_007759
(Syntrophus aciditrophicus SB)

0.0

35) Metho_1322
( YP_007313073.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_019977
(Methanomethylovorans hollandica DSM 15978)

0.0

36) Spica_2695
( YP_004699300.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_015732
(Treponema caldaria DSM 7334)

0.0

37) LRI_1098
( YP_008099452.1 )

HsdR family type I site-specific deoxyribonuclease

NC_021494
(Lactobacillus reuteri I5007)

0.0

38) hsdR
( YP_008105285.1 )

type I restriction-modification system restriction subunit

NC_021499
(Pseudomonas resinovorans NBRC 106553)

0.0

39) Cyan7425_3142
( YP_002483831.1 )

HsdR family type I site-specific deoxyribonuclease

NC_011884
(Cyanothece sp. PCC 7425)

0.0

40) MROS_1287
( YP_006527537.1 )

HsdR family type I site-specific deoxyribonuclease

NC_018178
(Melioribacter roseus P3M-2)

0.0

41) Mbur_1213
( YP_565885.1 )

HsdR family type I site-specific deoxyribonuclease

NC_007955
(Methanococcoides burtonii DSM 6242)

0.0

42) Dacet_2560
( YP_003505275.1 )

HsdR family type I site-specific deoxyribonuclease

NC_013943
(Denitrovibrio acetiphilus DSM 12809)

0.0

43) Xfasm12_2283
( YP_001776760.1 )

Type I site-specific deoxyribonuclease

NC_010513
(Xylella fastidiosa M12)

0.0

44) Mmol_0222
( YP_003047659.1 )

HsdR family type I site-specific deoxyribonuclease

NC_012968
(Methylotenera mobilis JLW8)

0.0

45) G432_08520
( YP_007616025.1 )

HsdR family type I site-specific deoxyribonuclease

NC_020561
(Sphingomonas sp. MM-1)

0.0

46) Galf_1221
( YP_003847013.1 )

HsdR family type I site-specific deoxyribonuclease

NC_014394
(Gallionella capsiferriformans ES-2)

0.0

47) Metme_1967
( YP_004512879.1 )

HsdR family type I site-specific deoxyribonuclease

NC_015572
(Methylomonas methanica MC09)

0.0

48) Caur_1816
( YP_001635422.1 )

HsdR family type I site-specific deoxyribonuclease

NC_010175
(Chloroflexus aurantiacus J-10-fl)

0.0

49) Chy400_1964
( YP_002569695.1 )

HsdR family type I site-specific deoxyribonuclease

NC_012032
(Chloroflexus sp. Y-400-fl)

0.0

50) Clocl_1698
( YP_005046236.1 )

HsdR family type I site-specific deoxyribonuclease

NC_016627
(Clostridium clariflavum DSM 19732)

0.0

51) MmarC6_0040
( YP_001548098.1 )

HsdR family type I site-specific deoxyribonuclease

NC_009975
(Methanococcus maripaludis C6)

0.0

52) MmarC7_0017
( YP_001329240.1 )

HsdR family type I site-specific deoxyribonuclease

NC_009637
(Methanococcus maripaludis C7)

0.0

53) XF2739
( NP_300016.2 )

type I restriction-modification system endonuclease

NC_002488
(Xylella fastidiosa 9a5c)

0.0

54) Dgeo_2012
( YP_605475.1 )

HsdR family type I site-specific deoxyribonuclease

NC_008025
(Deinococcus geothermalis DSM 11300)

0.0

55) Neut_0537
( YP_746777.1 )

type I site-specific deoxyribonuclease, HsdR family protein

NC_008344
(Nitrosomonas eutropha C91)

0.0

56) CJA_3632
( YP_001984085.1 )

HsdR protein

NC_010995
(Cellvibrio japonicus Ueda107)

0.0

57) Rfer_4010
( YP_525239.1 )

HsdR family type I site-specific deoxyribonuclease

NC_007908
(Rhodoferax ferrireducens T118)

0.0

58) LFE_0359
( YP_005468211.1 )

type I sitespecific deoxyribonuclease, HsdR family

NC_017094
(Leptospirillum ferrooxidans C2-3)

0.0

59) GYY_04440
( YP_004742506.1 )

HsdR family type I site-specific deoxyribonuclease

NC_015847
(Methanococcus maripaludis X1)

0.0

60) TREAZ_2426
( YP_004528992.1 )

putative type-1 restriction enzyme MjaXP R protein

NC_015577
(Treponema azotonutricium ZAS-9)

0.0

61) hsdR
( YP_002952899.1 )

type I restriction enzyme R protein

NC_012796
(Desulfovibrio magneticus RS-1)

0.0

62) Ppro_1854
( YP_901524.1 )

HsdR family type I site-specific deoxyribonuclease

NC_008609
(Pelobacter propionicus DSM 2379)

0.0

63) Pnap_4782
( YP_973933.1 )

HsdR family type I site-specific deoxyribonuclease

NC_008761
(Polaromonas naphthalenivorans CJ2)

0.0

64) A458_03965
( YP_006456468.1 )

type I restriction-modification enzyme, R subunit

NC_018028
(Pseudomonas stutzeri CCUG 29243)

0.0

65) MmTuc01_2253
( YP_007490847.1 )

Type I restriction-modification system, restriction subunit R

NC_020389
(Methanosarcina mazei Tuc01)

0.0

66) Ngar_c29150
( YP_006863491.1 )

HsdR family type I site-specific deoxyribonuclease

NC_018719
(Candidatus Nitrososphaera gargensis enrichment culture Ga9.2)

0.0

67) hsdR
( YP_002759690.1 )

type I restriction-modification system restriction subunit

NC_012489
(Gemmatimonas aurantiaca T-27)

0.0

68) CAP2UW1_1871
( YP_003167098.1 )

HsdR family type I site-specific deoxyribonuclease

NC_013194
(Candidatus Accumulibacter phosphatis UW-1)

0.0

69) PP1Y_AT2851
( YP_004533071.1 )

putative type I restriction-modification system HsdR

NC_015580
(Novosphingobium sp. PP1Y)

0.0

70) Bpro_1944
( YP_548773.1 )

HsdR family type I site-specific deoxyribonuclease

NC_007948
(Polaromonas sp. JS666)

0.0

71) Cag_1124
( YP_379429.1 )

Type I site-specific deoxyribonuclease HsdR

NC_007514
(Chlorobium chlorochromatii CaD3)

0.0

72) Veis_3013
( YP_997764.1 )

HsdR family type I site-specific deoxyribonuclease

NC_008786
(Verminephrobacter eiseniae EF01-2)

0.0

73) RoseRS_0281
( YP_001274663.1 )

HsdR family type I site-specific deoxyribonuclease

NC_009523
(Roseiflexus sp. RS-1)

0.0

74) Mpe_A0011
( YP_001019208.1 )

type I site-specific deoxyribonuclease

NC_008825
(Methylibium petroleiphilum PM1)

0.0

75) Thein_1571
( YP_004626395.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_015681
(Thermodesulfatator indicus DSM 15286)

0.0

76) Acav_4671
( YP_004237117.1 )

HsdR family type I site-specific deoxyribonuclease

NC_015138
(Acidovorax avenae ATCC 19860)

0.0

77) Anacy_6058
( YP_007160104.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_019773
(Anabaena cylindrica PCC 7122)

0.0

78) hsdR2
( YP_003623498.1 )

Type I site-specific deoxyribonuclease HsdR

NC_014145
(Thiomonas sp. 3As)

0.0

79) Mrub_2450
( YP_003508221.1 )

type I site-specific deoxyribonuclease HsdR family

NC_013946
(Meiothermus ruber DSM 1279)

0.0

80) K649_10280
( YP_007880845.1 )

type I site-specific deoxyribonuclease HsdR family protein

NC_021081
(Meiothermus ruber DSM 1279)

0.0

81) Sputcn32_2912
( YP_001184428.1 )

HsdR family type I site-specific deoxyribonuclease

NC_009438
(Shewanella putrefaciens CN-32)

0.0

82) CFSAN002050_05875
( YP_008259121.1 )

DEAD/DEAH box helicase

NC_021818
(Salmonella enterica CFSAN002050)

0.0

83) R2APBS1_3887
( YP_007592173.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_020541
(Rhodanobacter sp. 2APBS1)

0.0

84) hsdR
( YP_771133.1 )

putative type I restriction-modification system HsdR

NC_008384
(Rhizobium leguminosarum 3841)

0.0

85) Mhun_2781
( YP_504195.1 )

HsdR family type I site-specific deoxyribonuclease

NC_007796
(Methanospirillum hungatei JF-1)

0.0

86) Zmob_1744
( YP_005527847.1 )

HsdR family type I site-specific deoxyribonuclease

NC_017180
(Zymomonas mobilis ATCC 10988)

0.0

87) hsdR1
( YP_003623201.1 )

Type I site-specific deoxyribonuclease HsdR

NC_014145
(Thiomonas sp. 3As)

0.0

88) hsdR3
( YP_003626028.1 )

Type I site-specific deoxyribonuclease HsdR

NC_014145
(Thiomonas sp. 3As)

0.0

89) hsdR
( YP_005801360.1 )

type I restriction-modification system endonuclease

NC_017390
(Erwinia pyrifoliae DSM 12163)

0.0

90) EpC_05850
( YP_002647617.1 )

type I restriction-modification system restriction subunit

NC_012214
(Erwinia pyrifoliae Ep1/96)

0.0

91) Rfer_0028
( YP_521321.1 )

HsdR family type I site-specific deoxyribonuclease

NC_007908
(Rhodoferax ferrireducens T118)

0.0

92) STH1908
( YP_075737.1 )

type I restriction-modification system endonuclease

NC_006177
(Symbiobacterium thermophilum IAM 14863)

0.0

93) H650_18270
( YP_008109408.1 )

DEAD/DEAH box helicase

NC_021500
(Enterobacter sp. R4-368)

0.0

94) SCE1572_29155
( YP_008152220.1 )

hypothetical protein

NC_021658
(Sorangium cellulosum So0157-2)

0.0

95) TSC_c12320
( YP_004202401.1 )

type I site-specific deoxyribonuclease HsdR

NC_014974
(Thermus scotoductus SA-01)

0.0

96) VFMJ11_B0055
( YP_002157417.1 )

type I site-specific deoxyribonuclease

NC_011185
(Vibrio fischeri MJ11)

0.0

97) EcE24377A_0289
( YP_001461443.1 )

HsdR family type I site-specific deoxyribonuclease

NC_009801
(Escherichia coli E24377A)

0.0

98) PCC21_032460
( YP_006647902.1 )

type I restriction-modification system subunit R

NC_018525
(Pectobacterium carotovorum PCC21)

0.0

99) PT7_2213
( YP_004417377.1 )

HsdR family type I site-specific deoxyribonuclease

NC_015458
(Pusillimonas sp. T7-7)

0.0

100) Rhom172_1461
( YP_004825222.1 )

HsdR family type I site-specific deoxyribonuclease

NC_015966
(Rhodothermus marinus SG0.5JP17-172)

0.0

101) PGA2_c07320
( YP_006561993.1 )

type I restriction-modification system, R subunit

NC_018286
(Phaeobacter gallaeciensis 2.10)

0.0

102) CSSP291_03040
( YP_007439495.1 )

hypothetical protein

NC_020260
(Cronobacter sakazakii Sp291)

0.0

103) PSTAB_3393
( YP_004715763.1 )

type I restriction-modification enzyme, R subunit

NC_015740
(Pseudomonas stutzeri ATCC 17588)

0.0

104) XOO_3254
( YP_452283.1 )

type I restriction-modification system endonuclease

NC_007705
(Xanthomonas oryzae MAFF 311018)

0.0

105) EJP617_05160
( YP_005817084.1 )

Type I restriction-modification system restriction subunit

NC_017445
(Erwinia sp. Ejp617)

0.0

106) hsdR
( YP_007595121.1 )

type I restriction-modification system, restriction subunit R

NC_020547
(Acinetobacter baumannii D1279779)

0.0

107) Arth_0986
( YP_830483.1 )

HsdR family type I site-specific deoxyribonuclease

NC_008541
(Arthrobacter sp. FB24)

0.0

108) Ser39006_0954
( YP_008521336.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_022268
(Serratia sp. ATCC 39006)

0.0

109) PSPTO_1089
( NP_790923.1 )

type I restriction-modification enzyme, R subunit

NC_004578
(Pseudomonas syringae DC3000)

0.0

110) AFE_2790
( YP_002427160.1 )

type I restriction-modification enzyme, R subunit

NC_011761
(Acidithiobacillus ferrooxidans ATCC 23270)

0.0

111) Lferr_2413
( YP_002220816.1 )

HsdR family type I site-specific deoxyribonuclease

NC_011206
(Acidithiobacillus ferrooxidans ATCC 53993)

0.0

112) APECO78_16850
( YP_007382535.1 )

HsdR family type I site-specific deoxyribonuclease

NC_020163
(Escherichia coli APEC O78)

0.0

113) ESA_00617
( YP_001436737.1 )

hypothetical protein

NC_009778
(Cronobacter sakazakii ATCC BAA-894)

0.0

114) EcE24377A_2911
( YP_001463946.1 )

HsdR family type I site-specific deoxyribonuclease

NC_009801
(Escherichia coli E24377A)

0.0

115) Tola_1223
( YP_002892426.1 )

HsdR family type I site-specific deoxyribonuclease

NC_012691
(Tolumonas auensis DSM 9187)

0.0

116) MM_0431
( NP_632455.1 )

type I restriction-modification system restriction subunit

NC_003901
(Methanosarcina mazei Go1)

0.0

117) Shewana3_4244
( YP_863759.1 )

HsdR family type I site-specific deoxyribonuclease

NC_008573
(Shewanella sp. ANA-3)

0.0

118) hsdR
( YP_001854379.1 )

type I restriction enzyme R protein

NC_010617
(Kocuria rhizophila DC2201)

0.0

119) Desal_2732
( YP_002992325.1 )

HsdR family type I site-specific deoxyribonuclease

NC_012881
(Desulfovibrio salexigens DSM 2638)

0.0

120) Psest_4044
( YP_007242144.1 )

HsdR family type I site-specific deoxyribonuclease

NC_019936
(Pseudomonas stutzeri RCH2)

0.0

121) Nwat_1306
( YP_003760553.1 )

HsdR family type I site-specific deoxyribonuclease

NC_014315
(Nitrosococcus watsonii C-113)

0.0

122) CJJ81176_1534
( YP_001001189.1 )

type I restriction-modification enzyme, R subunit

NC_008787
(Campylobacter jejuni 81-176)

0.0

123) hsdR
( YP_005656818.1 )

putative type I restriction enzyme R protein

NC_017279
(Campylobacter jejuni IA3902)

0.0

124) hsdR
( YP_002344921.1 )

type I restriction enzyme R protein

NC_002163
(Campylobacter jejuni NCTC 11168)

0.0

125) hsdR
( YP_006633669.1 )

type I restriction enzyme R protein

NC_018521
(Campylobacter jejuni NCTC 11168-BN148)

0.0

126) A911_07460
( YP_006858536.1 )

putative type I restriction enzyme R protein

NC_018709
(Campylobacter jejuni PT14)

0.0

127) hsdR3
( YP_008562898.1 )

type I restriction enzyme, R subunit

NC_022362
(jejuni jejuni 00-2425)

0.0

128) hsdR3
( YP_008541144.1 )

type I restriction enzyme, R subunit

NC_022352
(jejuni jejuni 00-2426)

0.0

129) hsdR3
( YP_008539461.1 )

type I restriction enzyme, R subunit

NC_022351
(jejuni jejuni 00-2538)

0.0

130) hsdR3
( YP_008542866.1 )

type I restriction enzyme, R subunit

NC_022353
(jejuni jejuni 00-2544)

0.0

131) CYCME_0985
( YP_008373677.1 )

Type I site-specific restriction-modification system, R (restriction) subunit-related helicase

NC_021917
(Cycloclasticus zancles 7-ME)

0.0

132) Jden_2251
( YP_003162189.1 )

HsdR family type I site-specific deoxyribonuclease

NC_013174
(Jonesia denitrificans DSM 20603)

0.0

133) Maqu_3386
( YP_960644.1 )

HsdR family type I site-specific deoxyribonuclease

NC_008740
(Marinobacter aquaeolei VT8)

0.0

134) Noc_1804
( YP_343804.1 )

type I topoisomerase

NC_007484
(Nitrosococcus oceani ATCC 19707)

0.0

135) BN4_12249
( YP_007494635.1 )

putative type I restriction enzyme HindVIIP R protein

NC_020409
(Desulfovibrio piezophilus C1TLV30)

0.0

136) MARHY0349
( YP_005428274.1 )

type I restriction enzyme HindVIIP R protein

NC_017067
(Marinobacter hydrocarbonoclasticus ATCC 49840)

0.0

137) Calow_2045
( YP_004003356.1 )

type i site-specific deoxyribonuclease, hsdr family

NC_014657
(Caldicellulosiruptor owensensis OL)

0.0

138) Tmath_1861
( YP_003677563.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_014209
(Thermoanaerobacter mathranii A3)

0.0

139) Sbal223_4470
( YP_002364291.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_011668
(Shewanella baltica OS223)

0.0

140) hsdR
( NP_840469.1 )

restriction enzyme type I helicase subunits and related helicases

NC_004757
(Nitrosomonas europaea ATCC 19718)

0.0

141) alr4604
( NP_488644.1 )

type I site-specific deoxyribonuclease chain R

NC_003272
(Nostoc sp. PCC 7120)

0.0

142) hsdR
( NP_246480.1 )

hypothetical protein

NC_002663
(Pasteurella multocida Pm70)

0.0

143) NT08PM_1867
( YP_006240732.1 )

putative type I restriction enzyme MjaXP R protein

NC_017764
(Pasteurella multocida 3480)

0.0

144) hsdR
( YP_005446850.1 )

type I restriction-modification system restriction subunit

NC_017080
(Phycisphaera mikurensis NBRC 102666)

0.0

145) hsdR3
( YP_001053343.1 )

type I site-specific restriction-modification system, restriction subunit

NC_009053
(Actinobacillus pleuropneumoniae L20)

0.0

146) GLX_22380
( YP_004869020.1 )

type I/III endonuclease restriction R subunit

NC_016027
(Gluconacetobacter xylinus NBRC 3288)

0.0

147) Mzhil_1435
( YP_004616498.1 )

HsdR family type I site-specific deoxyribonuclease

NC_015676
(Methanosalsum zhilinae DSM 4017)

0.0

148) ASU2_03875
( YP_006817152.1 )

putative type I site-specific restriction-modification system, restriction subunit

NC_018690
(Actinobacillus suis H91-0380)

0.0

149) hsdR
( YP_002474982.1 )

Type I site-specific restriction-modification system, R (restriction) subunit and related helicases

NC_011852
(Haemophilus parasuis SH0165)

0.0

150) XOO3452
( YP_202091.6 )

type I restriction-modification system endonuclease

NC_006834
(Xanthomonas oryzae KACC10331)

0.0

151) CGSHiEE_04165
( YP_001290621.1 )

putative type I restriction enzyme HindVIIP R protein

NC_009566
(Haemophilus influenzae PittEE)

0.0

152) hsdR
( YP_005829269.1 )

Type I restriction enzyme HindVIIP, R protein

NC_017452
(Haemophilus influenzae R2846)

0.0

153) K756_04780
( YP_008123717.1 )

Type I site-specific restriction-modification system, R (restriction) subunit-related helicase

NC_021521
(Haemophilus parasuis ZJ0906)

0.0

154) GWCH70_1642
( YP_002949695.1 )

HsdR family type I site-specific deoxyribonuclease

NC_012793
(Geobacillus sp. WCH70)

0.0

155) hsdR3
( YP_004135181.1 )

type i restriction enzyme hindviip r protein

NC_014920
(Haemophilus influenzae F3031)

0.0

156) PARA_15870
( YP_004823273.1 )

hypothetical protein

NC_015964
(Haemophilus parainfluenzae T3T1)

0.0

157) Plabr_4424
( YP_004272018.1 )

HsdR family type I site-specific deoxyribonuclease

NC_015174
(Planctomyces brasiliensis DSM 5305)

0.0

158) Ethha_0476
( YP_004090792.1 )

HsdR family type I site-specific deoxyribonuclease

NC_014828
(Ethanoligenens harbinense YUAN-3)

0.0

159) hsdR3
( YP_249269.1 )

type I restriction enzyme HindVIIP R protein

NC_007146
(Haemophilus influenzae 86-028NP)

0.0

160) HMPREF0868_0494
( YP_003474824.1 )

HsdR family type I site-specific deoxyribonuclease

NC_013895
(Clostridiales genomosp. UPII9-5)

0.0

161) WQG_11930
( YP_007548261.1 )

type I restriction enzyme HindVIIP R protein

NC_020515
(Bibersteinia trehalosi USDA-ARS-USMARC-192)

0.0

162) Mpet_1680
( YP_003894871.1 )

type I site-specific deoxyribonuclease

NC_014507
(Methanoplanus petrolearius DSM 11571)

0.0

163) GYMC52_2377
( YP_004132907.1 )

HsdR family type I site-specific deoxyribonuclease

NC_014915
(Geobacillus sp. Y412MC52)

0.0

164) GYMC61_0288
( YP_003251463.1 )

HsdR family type I site-specific deoxyribonuclease

NC_013411
(Geobacillus sp. Y412MC61)

0.0

165) F382_03180
( YP_008233518.1 )

type I restriction endonuclease HindVIIP subunit R

NC_021743
(Mannheimia haemolytica D153)

0.0

166) J450_02390
( YP_008219540.1 )

type I restriction endonuclease HindVIIP subunit R

NC_021738
(Mannheimia haemolytica D171)

0.0

167) J451_03490
( YP_008222094.1 )

type I restriction endonuclease HindVIIP subunit R

NC_021739
(Mannheimia haemolytica D174)

0.0

168) MHH_c24310
( YP_007884225.1 )

type I restriction enzyme, R subunit

NC_021082
(Mannheimia haemolytica M42548)

0.0

169) D650_9850
( YP_007665762.1 )

type I restriction enzyme HindVIIP R protein

NC_020833
(Mannheimia haemolytica USDA-ARS-USMARC-183)

0.0

170) D648_15990
( YP_007669111.1 )

type I restriction enzyme HindVIIP R protein

NC_020834
(Mannheimia haemolytica USDA-ARS-USMARC-185)

0.0

171) N220_08970
( YP_008339235.1 )

type I restriction endonuclease HindVIIP subunit R

NC_021883
(Mannheimia haemolytica USMARC_2286)

0.0

172) FMG_1372
( YP_001692680.1 )

type I restriction-modification system restriction subunit

NC_010376
(Finegoldia magna ATCC 29328)

0.0

173) Desaf_3450
( YP_005053395.1 )

HsdR family type I site-specific deoxyribonuclease

NC_016629
(Desulfovibrio africanus Walvis Bay)

0.0

174) hsdR
( YP_005827547.1 )

Type I restriction enzyme HindVIIP, R protein

NC_017451
(Haemophilus influenzae R2866)

0.0

175) SFBM_0021
( YP_004770546.1 )

type I restriction-modification system, restriction protein

NC_015913
(Candidatus Arthromitus sp. mouse isolate)

0.0

176) hsdR
( YP_005667738.1 )

HsdR family type I site-specific deoxyribonuclease

NC_017294
(Candidatus Arthromitus sp. SFB-mouse-Yit)

0.0

177) hsdR
( NP_439437.1 )

type I restriction enzyme

NC_000907
(Haemophilus influenzae Rd KW20)

0.0

178) FP2_17130
( YP_007837446.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_021042
(Faecalibacterium prausnitzii L2/6)

0.0

179) HICON_18090
( YP_004138718.1 )

type I restriction enzyme HindVIIP R protein

NC_014922
(Haemophilus influenzae F3047)

0.0

180) Desru_3588
( YP_004547076.1 )

type I site-specific deoxyribonuclease HsdR family

NC_015589
(Desulfotomaculum ruminis DSM 2154)

0.0

181) HMPREF0389_01038
( YP_005055168.1 )

50S ribosomal protein L7/L12

NC_016630
(Filifactor alocis ATCC 35896)

0.0

182) Alfi_1812
( YP_006410821.1 )

HsdR family type I site-specific deoxyribonuclease

NC_018011
(Alistipes finegoldii DSM 17242)

0.0

183) Dtpsy_1863
( YP_002553320.1 )

type I site-specific deoxyribonuclease, hsdr family

NC_011992
(Acidovorax ebreus TPSY)

0.0

184) HIB_14360
( YP_005179461.1 )

putative type I restriction enzyme HindVIIP R protein

NC_016809
(Haemophilus influenzae 10810)

0.0

185) AL1_19090
( YP_007817023.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_021030
(Alistipes shahii WAL 8301)

0.0

186) FP2_13030
( YP_007837104.1 )

type I site-specific deoxyribonuclease, HsdR family

NC_021042
(Faecalibacterium prausnitzii L2/6)

1e-179

187) hsdR
( YP_004887388.1 )

type I restriction-modification system restriction subunit

NC_016052
(Tetragenococcus halophilus NBRC 12172)

3e-177

188) M493_07025
( REF_PRJNA208285:M493 )

hypothetical protein

NC_022080
(Geobacillus sp. JF8)

2e-124

• Sequence Alignments

1) hsdR in NC_007168


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score = 1681 bits (6385),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1039/1039 (100%), Positives = 1039/1039 (100%), Gaps = 0/1039 (0%)

Query  1     MNFQFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKIN  60
             MNFQFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKIN
Sbjct  1     MNFQFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKIN  60

Query  61    SDIHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFE  120
             SDIHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFE
Sbjct  61    SDIHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFE  120

Query  121   HPQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180
             HPQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY
Sbjct  121   HPQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGM  240
             KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGM
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGM  240

Query  241   LNPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIW  300
             LNPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIW
Sbjct  241   LNPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIW  300

Query  301   HTQGSGKSLTMVFFSGKLIQMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360
             HTQGSGKSLTMVFFSGKLIQMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP
Sbjct  301   HTQGSGKSLTMVFFSGKLIQMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  361   KQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGF  420
             KQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGF
Sbjct  361   KQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGF  420

Query  421   NAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV  480
             NAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV
Sbjct  421   NAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV  480

Query  481   ADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPR  540
             ADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPR
Sbjct  481   ADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPR  540

Query  541   VEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVV  600
             VEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVV
Sbjct  541   VEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVV  600

Query  601   MTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDK  660
             MTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDK
Sbjct  601   MTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDK  660

Query  661   PMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVE  720
             PMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVE
Sbjct  661   PMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVE  720

Query  721   LMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGK  780
             LMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGK
Sbjct  721   LMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGK  780

Query  781   AFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVV  840
             AFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVV
Sbjct  781   AFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVV  840

Query  841   TEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATV  900
             TEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATV
Sbjct  841   TEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATV  900

Query  901   SKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALV  960
             SKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALV
Sbjct  901   SKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALV  960

Query  961   SHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDL  1020
             SHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDL
Sbjct  961   SHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDL  1020

Query  1021  QKMAVEQVVEQAELMASNQ  1039
             QKMAVEQVVEQAELMASNQ
Sbjct  1021  QKMAVEQVVEQAELMASNQ  1039

2) M013TW_0061 in NC_016928


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score = 1651 bits (6271),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1010/1039 (98%), Positives = 1029/1039 (99%), Gaps = 0/1039 (0%)

Query  1     MNFQFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKIN  60
             MNFQFNEDDLEQV LEWL+SL+YDYKKGNEISMT+L+PERKSDKDVVLHERLEKALRKIN
Sbjct  1     MNFQFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKIN  60

Query  61    SDIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFE  120
             SDIHPRFIEKA+HELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKI+DFE
Sbjct  61    SDIHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFE  120

Query  121   YPQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180
              PQNNDFLAVNQ+T+VNGDY KRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY
Sbjct  121   HPQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGM  240
             KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDG+TESS++LASLDVLI+GM
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGM  240

Query  241   LNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIW  300
             LNP TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASS QGDGKGGVIW
Sbjct  241   LNPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIW  300

Query  301   HTQGSGKSLTMVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360
             HTQGSGKSLTMVFFSGKLIQMLNNPTLV+VTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP
Sbjct  301   HTQGSGKSLTMVFFSGKLIQMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  361   KQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGF  420
             KQAETRKELKSLLSVESGGIVFTTMQKFEPEQNET MAALTERKNVIVMADEAHRTQYGF
Sbjct  361   KQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGF  420

Query  421   NAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV  480
             NAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV
Sbjct  421   NAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV  480

Query  481   ADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPR  540
             ADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPR
Sbjct  481   ADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPR  540

Query  541   VEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVV  600
             VEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVV
Sbjct  541   VEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVV  600

Query  601   MTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDK  660
             MTGSSSDPTSFQRHIGPKKRR++LEKRMKDV+DELQLVIVRDMWLTGFDVPSMHTMYIDK
Sbjct  601   MTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDK  660

Query  661   PMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVE  720
             PMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVE
Sbjct  661   PMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVE  720

Query  721   LMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGK  780
             LMLLKYDVIQDMLYNLDYSKFNS+KKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGK
Sbjct  721   LMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGK  780

Query  781   AFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVV  840
             AFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVV
Sbjct  781   AFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVV  840

Query  841   TEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATV  900
             TEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATV
Sbjct  841   TEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATV  900

Query  901   SKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALA  960
             SKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDAL 
Sbjct  901   SKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALV  960

Query  961   SHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDL  1020
             SHETAK AM DK LRAIAHELTKTVKENM+VDWSKRDSAKAKMRVAVRRLLKKYGYPPDL
Sbjct  961   SHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDL  1020

Query  1021  QKMAVEQVVEQAELMANNQ  1039
             QKMAVEQVVEQAELMA+NQ
Sbjct  1021  QKMAVEQVVEQAELMASNQ  1039

3) hsdR in NC_022442


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score = 1651 bits (6271),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1010/1039 (98%), Positives = 1029/1039 (99%), Gaps = 0/1039 (0%)

Query  1     MNFQFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKIN  60
             MNFQFNEDDLEQV LEWL+SL+YDYKKGNEISMT+L+PERKSDKDVVLHERLEKALRKIN
Sbjct  1     MNFQFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKIN  60

Query  61    SDIHPRFIEKALHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFE  120
             SDIHPRFIEKA+HELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKI+DFE
Sbjct  61    SDIHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFE  120

Query  121   YPQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180
              PQNNDFLAVNQ+T+VNGDY KRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY
Sbjct  121   HPQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGM  240
             KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDG+TESS++LASLDVLI+GM
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGM  240

Query  241   LNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIW  300
             LNP TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASS QGDGKGGVIW
Sbjct  241   LNPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIW  300

Query  301   HTQGSGKSLTMVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360
             HTQGSGKSLTMVFFSGKLIQMLNNPTLV+VTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP
Sbjct  301   HTQGSGKSLTMVFFSGKLIQMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  361   KQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAALTERKNVIVMADEAHRTQYGF  420
             KQAETRKELKSLLSVESGGIVFTTMQKFEPEQNET MAALTERKNVIVMADEAHRTQYGF
Sbjct  361   KQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGF  420

Query  421   NAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV  480
             NAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV
Sbjct  421   NAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV  480

Query  481   ADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPR  540
             ADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPR
Sbjct  481   ADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPR  540

Query  541   VEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVV  600
             VEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVV
Sbjct  541   VEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVV  600

Query  601   MTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIVRDMWLTGFDVPSMHTMYIDK  660
             MTGSSSDPTSFQRHIGPKKRR++LEKRMKDV+DELQLVIVRDMWLTGFDVPSMHTMYIDK
Sbjct  601   MTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDK  660

Query  661   PMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVE  720
             PMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVE
Sbjct  661   PMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVE  720

Query  721   LMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGK  780
             LMLLKYDVIQDMLYNLDYSKFNS+KKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGK
Sbjct  721   LMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGK  780

Query  781   AFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVV  840
             AFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVV
Sbjct  781   AFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVV  840

Query  841   TEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATV  900
             TEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATV
Sbjct  841   TEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATV  900

Query  901   SKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALA  960
             SKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDAL 
Sbjct  901   SKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALV  960

Query  961   SHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDL  1020
             SHETAK AM DK LRAIAHELTKTVKENM+VDWSKRDSAKAKMRVAVRRLLKKYGYPPDL
Sbjct  961   SHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDL  1020

Query  1021  QKMAVEQVVEQAELMANNQ  1039
             QKMAVEQVVEQAELMA+NQ
Sbjct  1021  QKMAVEQVVEQAELMASNQ  1039

4) SAEMRSA15_00470 in NC_017763


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score = 1450 bits (5503),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 842/1040 (81%), Positives = 969/1040 (94%), Gaps = 1/1040 (0%)

Query  3     MIFQFSEDDLEQVALKWFEGLGYSVKNGRDSSDNGIMNERESDKDVVLDDRLEAALRRIN  62
             M FQF+EDDLEQV L W+E+L+Y  K+G + S  G+  ER SDKDVVL++RLE ALR+IN
Sbjct  1     MNFQFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKIN  60

Query  63    PELNNSAIEQAIHEISIEKSPSLLENNRSFHEMITNGIEVEHYNDDGETINDLVYVLDFD  122
             ++++   IE+AIHE+++EKSP+LLENN +FHE + NGIE+E+Y+D+G++I ++V ++DF+
Sbjct  61    SDIHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFE  120

Query  123   NPGNNDFLAVNQLTVVNGDYKKRPDIVLFINGLPVVVIELKNSTNESVGIEDGYHQLETY  182
             +P NNDFLAVNQ+TVVNGDY KRPDIVLFINGLP+VVIELKNSTNE+VG+EDGYHQLETY
Sbjct  121   HPQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  183   KMRIPQLFNHNAVLVTSDGVNTKAGSLTADYDRFMTWRTKDGKTEDSSTFRSLDILIHGM  242
             KMRIPQLF  N VLVTSDG+NTKAGSLTA+YDRFMTWR+KDG TE SS++ SLD+LI+GM
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGM  240

Query  243   LNKEVLLDLIRHFVLFQDDGKGNIVKILAAYHQYYAVNKAVDRAMEATSEHGDGKGGVIW  302
             LN   LLDLIR FVLFQDDGKG+I KILAAYHQYYAVNKAVDRA+ A+S +GDGKGGVIW
Sbjct  241   LNPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIW  300

Query  303   HTQGSGKSLTMVFFSGKLIQKLNNPTLVVVTDRNDLDNQLYGTFVKSKGRSGKGLLRQTP  362
             HTQGSGKSLTMVFFSGKLIQ LNNPTLV+VTDRNDLDNQLY+TFVKSKGRSGKGLLRQTP
Sbjct  301   HTQGSGKSLTMVFFSGKLIQMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  363   KQAESRKELKELLSVESGGIVFTTMQKFEPEEGQVTMDALTERKNVVVMADEAHRTQYGF  422
             KQAE+RKELK LLSVESGGIVFTTMQKFEPE+ +  M ALTERKNV+VMADEAHRTQYGF
Sbjct  361   KQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGF  420

Query  423   KATYNEKGEGIKYGYAKYLRDALPNASFVGFTGTPVSSTDKNTQMVFGNYIDVYDMTQSV  482
             +A Y++KGEGIKYGYAKYLRDALPNA+FVGFTGTPV+STDKNTQMVFGNYIDVYDMTQ+V
Sbjct  421   NAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV  480

Query  483   EDGSTVKIYYESRIIPLNLPTDLDIDDAYDVITFGQEEDTKSRLKSKWSRIEALSGAEKR  542
              DGSTVKIYYESR+IPLNLP  LD+D+AY+ IT +QEED K RLKSKWSRIEAL+GA  R
Sbjct  481   ADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPR  540

Query  543   VHALATEIINHFETRQKAMNGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVV  602
             V+ALA +II+HFETRQ+AM+GKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVV
Sbjct  541   VEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVV  600

Query  603   MTGSSSDPQNFQKHIGPKKRRNLLENRMKDINDELQLVIVRDMWLTGFDVPSMHTMYIDK  662
             MTGSSSDP +FQ+HIGPKKRR++LE+RMKD+NDELQLVIVRDMWLTGFDVPSMHTMYIDK
Sbjct  601   MTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDK  660

Query  663   PMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTDSDREQTGIDTDKALE  722
             PMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYT+SD+ QT+IDTDKA+E
Sbjct  661   PMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVE  720

Query  723   LMLVKYDIIQDMLYNHDYSDFESEDQLNRYNAISNTMDYIIGLGEKERERFVTTVTELSK  782
             LML+KYD+IQDMLYN DYS F+SE + +RY +ISNTMDY+IGLGE ER+RF+ TVTEL+K
Sbjct  721   LMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGK  780

Query  783   AFALCATEEAAQELNSEIAFLKAVKSGLVKLLAPPNEGSKLKKTPAEIEAEINQLISKSV  842
             AFALCATE +AQELN EIAF+KAVK+GLVKLL PP+EG K +KTPAE+EAEINQL+S+SV
Sbjct  781   AFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEG-KTRKTPAEVEAEINQLVSQSV  839

Query  843   VTEEVVDIYQTLGIENPDISILSDDFLKDVEGLQQKNVAVELLNKLLKGQVKSLMKTNTT  902
             VTE+V+D+YQTLG+E+PD+SILSDDFLKDVEGL+QKNVAVELLN+LLKGQVKSLMKTN+T
Sbjct  840   VTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNAT  899

Query  903   VSKRFSEMLSKSIQKYNNRSIEASKVIEELIQMAKEINQEKERGKELGLSTEEIAFYDAL  962
             VSKRFSEML++SI+KYN+RSIE+SKVIEELIQ+AK+I+QE++RG+ELGL+++EIAFYDAL
Sbjct  900   VSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDAL  959

Query  963   ASHETAKEAMDDKELRAIAHELTKTVKNNMSVDWSKRESAKAKMRVQVRRLLKKYGYPPD  1022
              SHETAK AM+DK LRAIAHELTKTVK+NMSVDWSKR+SAKAKMRV VRRLLKKYGYPPD
Sbjct  960   VSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPD  1019

Query  1023  IQKMAVEQVVEQAELMASQQ  1042
             +QKMAVEQVVEQAELMAS+Q
Sbjct  1020  LQKMAVEQVVEQAELMASNQ  1039

5) SAA6159_00056 in NC_017338


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score = 1445 bits (5484),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 839/1040 (81%), Positives = 967/1040 (93%), Gaps = 1/1040 (0%)

Query  1     MSFQFSEDDLEQVALKWFEGLGYSVKNGRDSSDNGIMNERESDKDVVFDDRLEAALRRIN  60
             M+FQF+EDDLEQV L W+E+L+Y  K+G + S  G+  ER SDKDVV+++RLE ALR+IN
Sbjct  1     MNFQFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKIN  60

Query  61    PELNNSAIEQAMREISIEKSPSLLENNRSFHEMITNGIEVEHYNDDGETINDLVYVFDFD  120
             ++++   IE+A++E+++EKSP+LLENN +FHE + NGIE+E+Y+D+G++I ++V + DF+
Sbjct  61    SDIHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFE  120

Query  121   NPGNNDFLAVNQLTVVNGDYKKRPDIVLFINGLPVVVIELKNSTNESVGIEDGYHQLETY  180
             +P NNDFLAVNQ+TVVNGDY KRPDIVLFINGLP+VVIELKNSTNE+VG+EDGYHQLETY
Sbjct  121   HPQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  181   KMRIPQLFNHNAVLVTSDGVNTKAGSLTADYDRFMTWRTKDGKTEDSSTFRSLDILIHGM  240
             KMRIPQLF  N VLVTSDG+NTKAGSLTA+YDRFMTWR+KDG TE SS++ SLD+LI+GM
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGM  240

Query  241   LNKDVLLDLIRHFVLFQDDGKGNIVKILAAYHQYYAVNKAIDRAIEATSEHGDGKGGVIW  300
             LN   LLDLIR FVLFQDDGKG+I KILAAYHQYYAVNKA+DRA+ A+S +GDGKGGVIW
Sbjct  241   LNPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIW  300

Query  301   HTQGSGKSLTMVFFSGKLIQKLNNPTLVVVTDRNDLDNQLYGTFVKSKGRSGKGLLRQTP  360
             HTQGSGKSLTMVFFSGKLIQ LNNPTLV+VTDRNDLDNQLY+TFVKSKGRSGKGLLRQTP
Sbjct  301   HTQGSGKSLTMVFFSGKLIQMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  361   KQAESRKELKELLSVESGGIVFTTMQKFEPEEGQVTMDALTDRKNVVVMADEAHRTQYGF  420
             KQAE+RKELK LLSVESGGIVFTTMQKFEPE+ +  M ALT+RKNV+VMADEAHRTQYGF
Sbjct  361   KQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGF  420

Query  421   KATYDEKGQGIKYGYAKYLRDALPNASFVGFTGTPVSSTDKNTQMVFGNYIDVYDMTQSV  480
             +A YD+KG+GIKYGYAKYLRDALPNA+FVGFTGTPV+STDKNTQMVFGNYIDVYDMTQ+V
Sbjct  421   NAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV  480

Query  481   EDGSTVKIYYESRIIPLNLPTDLDIDEAYDVITSGQEEDTKSRLKSKWSRIEALSGAEQR  540
              DGSTVKIYYESR+IPLNLP  LD+DEAY+ IT +QEED K RLKSKWSRIEAL+GA  R
Sbjct  481   ADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPR  540

Query  541   VHALATDIINHFETRQKAMKGKGMIVTMSRRIAVDLYDEIVRLKPEWHSDDDDKGVIKVV  600
             V+ALA DII+HFETRQ+AMKGKGMIVTMSRRIAVDLYDEI+RLKPEWHSDDDDKGVIKVV
Sbjct  541   VEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVV  600

Query  601   MTGSSSDPQNFQKHIGPKKRRNLLENRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDK  660
             MTGSSSDP +FQ+HIGPKKRR++LE+RMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDK
Sbjct  601   MTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDK  660

Query  661   PMKGHNLMQAIARVNRVFIDKPGGLIVDYVGIAESLKEALKEYTDSDREQTGIDTDKALE  720
             PMKGHNLMQAIARVNRVF DKPGGLIVDYVGIAESLKEALKEYT+SD+ QT+IDTDKA+E
Sbjct  661   PMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVE  720

Query  721   LMLMKYDIIQDMLYNHDSSDFESEDQLNRYNAISNTMDYIIGLGENERERFVTTVTELSK  780
             LML+KYD+IQDMLYN D S F+SE + +RY +ISNTMDY+IGLGE+ER+RF+ TVTEL+K
Sbjct  721   LMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGK  780

Query  781   AFALCATEEAAQELNSEIAFLKAVKSGLVKLLAPPSEGSKRKKTPAEIEAEINQLISKSV  840
             AFALCATE +AQELN EIAF+KAVK+GLVKLL PP EG K +KTPAE+EAEINQL+S+SV
Sbjct  781   AFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEG-KTRKTPAEVEAEINQLVSQSV  839

Query  841   VTEEVVDIYQTLGIENPDISILSDDFLKDVEGLQQKNVAVELLNKLLKGQVKSLMKTNTT  900
             VTE+V+D+YQTLG+E+PD+SILSDDFLKDVEGL+QKNVAVELLN+LLKGQVKSLMKTN+T
Sbjct  840   VTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNAT  899

Query  901   VSKRFSEMLSKSIQKYNNRSIEASKVIEELIQMAKEINQEKERGKELGLSTEEIAFYDAL  960
             VSKRFSEML++SI+KYN+RSIE+SKVIEELIQ+AK+I+QE++RG+ELGL+++EIAFYDAL
Sbjct  900   VSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDAL  959

Query  961   ASHETAKEAMDDKELRAIAHELTKTVKNNMSVDWSKRESAKAKMRVQVRRLLKKYGYPPD  1020
              SHETAK AM+DK LRAIAHELTKTVK+NMSVDWSKR+SAKAKMRV VRRLLKKYGYPPD
Sbjct  960   VSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPD  1019

Query  1021  LQKMAVEQVVEQAELMASQQ  1040
             LQKMAVEQVVEQAELMAS+Q
Sbjct  1020  LQKMAVEQVVEQAELMASNQ  1039

6) hsdR in NC_017349


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score = 1444 bits (5480),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 840/1040 (81%), Positives = 965/1040 (93%), Gaps = 1/1040 (0%)

Query  1     MSFQFSEDDLEQVALKWFEGLGYSVKNGRDSSDNGIMNERESDKDVVFDDRLEAALRRIN  60
             M+FQF+EDDLEQV L W+E+L+Y  K+G + S  G+  ER SDKDVV+++RLE ALR+IN
Sbjct  1     MNFQFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKIN  60

Query  61    PELNNSAIEQAMREISIEKSPSLLENNRSFHEMITNGIEVEHYNDDGETINDLVYVFDFD  120
             ++++   IE+A++E+++EKSP+LLENN +FHE + NGIE+E+Y+D+G++I ++V + DF+
Sbjct  61    SDIHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFE  120

Query  121   NPGNNDFLAVNQLTVVNGDYKKRPDIVLFINGLPVVVIELKNSTNESVGIEDGYHQIETY  180
             +P NNDFLAVNQ+TVVNGDY KRPDIVLFINGLP+VVIELKNSTNE+VG+EDGYHQ+ETY
Sbjct  121   HPQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  181   KMRTPQLFNHNAVLVTSDGINTKAGSLTADYDRFMTWRTKDGKTEDSSTFRSLDILIHGM  240
             KMR PQLF  N VLVTSDGINTKAGSLTA+YDRFMTWR+KDG TE SS++ SLD+LI+GM
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGM  240

Query  241   LNKEVLLDLIRHFVLFQDDGKGNIVKILAAYHQYYAVNKAVDRAMEATSEHGDGKGGVIW  300
             LN   LLDLIR FVLFQDDGKG+I KILAAYHQYYAVNKAVDRA+ A+S +GDGKGGVIW
Sbjct  241   LNPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIW  300

Query  301   HTQGSGKSLTMVFFSGKLIQKLNNPTLVVVTDRNDLDNQLYGTFVKSKGRSGKGLLRQTP  360
             HTQGSGKSLTMVFFSGKLIQ LNNPTLV+VTDRNDLDNQLY+TFVKSKGRSGKGLLRQTP
Sbjct  301   HTQGSGKSLTMVFFSGKLIQMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  361   KQAESRKELKELLSVESGGIVFTTMQKFEPEEGQVTMDALTERKNVVVMADEAHRTQYGF  420
             KQAE+RKELK LLSVESGGIVFTTMQKFEPE+ +  M ALTERKNV+VMADEAHRTQYGF
Sbjct  361   KQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGF  420

Query  421   KATYNEKGEGIKYGYAKYLRDALPNASFVGFTGTPVSSTDKNTQMVFGNYIDVYDMTQSV  480
             +A Y++KGEGIKYGYAKYLRDALPNA+FVGFTGTPV+STDKNTQMVFGNYIDVYDMTQ+V
Sbjct  421   NAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV  480

Query  481   EDGSTVKIYYESRIIPLNLPTDLDIDDAYDVITSGQEEDTKSRLKSKWSRIEALSGAEKR  540
              DGSTVKIYYESR+IPLNLP  LD+D+AY+ IT +QEED K RLKSKWSRIEAL+GA  R
Sbjct  481   ADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPR  540

Query  541   VHALATDIINHFETRQKAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDNKGVIKVV  600
             V+ALA DII+HFETRQ+AMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDD+KGVIKVV
Sbjct  541   VEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVV  600

Query  601   MTGSSSDPQNFQKHIGPKKRRNLLENRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDK  660
             MTGSSSDP +FQ+HIGPKKRR++LE+RMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDK
Sbjct  601   MTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDK  660

Query  661   PMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTDSDREQTGIDTEKALE  720
             PMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYT+SD+ QT+IDT+KA+E
Sbjct  661   PMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVE  720

Query  721   LMLMKYDIIQDMLYNHDYSDFESEDQLNRYNAISNTMDYIIGLGEKERERFVTTVTELSK  780
             LML+KYD+IQDMLYN DYS F+SE + +RY +ISNTMDY+IGLGE ER+RF+ TVTEL+K
Sbjct  721   LMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGK  780

Query  781   AFALCATEEAAQELNSEIAFLKAVKSGLVKLLAPPSEGSKRKKTPAEIEAEINQLISKSV  840
             AFALCATE +AQELN EIAF+KAVK+GLVKLL PP EG K +KTPAE+EAEINQL+S+SV
Sbjct  781   AFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEG-KTRKTPAEVEAEINQLVSQSV  839

Query  841   VTEEVVDIYQTLGIENPDISILSDDFLKDVEGLQQKNVAVELLNKLLKGQVKSLMKTNAT  900
             VTE+V+D+YQTLG+E+PD+SILSDDFLKDVEGL+QKNVAVELLN+LLKGQVKSLMKTNAT
Sbjct  840   VTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNAT  899

Query  901   VSKRFSEMLSKSIQKYNNRSIEASKVIEELIQMAKEINQEKERGKELGLSTEEIAFYDAL  960
             VSKRFSEML++SI+KYN+RSIE+SKVIEELIQ+AK+I+QE++RG+ELGL+++EIAFYDAL
Sbjct  900   VSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDAL  959

Query  961   ASHETAKEAMGDKELRAIAHELTKTVKNNMSVDWSKRESAKAKMRVQVRRLLKKNGYPPD  1020
              SHETAK AM DK LRAIAHELTKTVK+NMSVDWSKR+SAKAKMRV VRRLLKK GYPPD
Sbjct  960   VSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPD  1019

Query  1021  LQKMAVEQVVEQAELMASQQ  1040
             LQKMAVEQVVEQAELMAS+Q
Sbjct  1020  LQKMAVEQVVEQAELMASNQ  1039

7) SAMSHR1132_00490 in NC_016941


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score = 1174 bits (4451),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 715/748 (96%), Positives = 738/748 (99%), Gaps = 3/748 (0%)

Query  1    NLLENNLTFHENLINGIEVEDYDDEG-SIVEIVKIVDFEHPQNNNFLAVNQFTVVNGDYT  59
            NLLENNLTFHENLINGIE+EDYDDEG SIVEIVKIVDFEHPQNN+FLAVNQFTVVNGDYT
Sbjct  82   NLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNNDFLAVNQFTVVNGDYT  141

Query  60   KRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVVVTSDGIN  119
            KRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQLFTFNEV+VTSDGIN
Sbjct  142  KRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTSDGIN  201

Query  120  TKVGSLTANYDRFMTWRSKDGETESSSSLASLDVLIHGMLNPETLLDLIRYFVLFQDNGK  179
            TK GSLTANYDRFMTWRSKDGETESSSSLASLDVLI+GMLNP TLLDLIRYFVLFQD+GK
Sbjct  202  TKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPKTLLDLIRYFVLFQDDGK  261

Query  180  GHISKILAAYHQYYAVNKAVDRALLASSGRGDGKGGVIWHTQGSGKSLTMVFFSGKLIQM  239
            GHISKILAAYHQYYAVNKAVDRALLASSG+GDGKGGVIWHTQGSGKSLTMVFFSGKLIQM
Sbjct  262  GHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQM  321

Query  240  LNNPTLVVITDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESDGIV  299
            LNNPTLV++TDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVES+GIV
Sbjct  322  LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIV  381

Query  300  FTTMQKFEPEQNETTMASLTERKNVFVMADEAHRTQYGFNANYDDRGEGIKYGYAKYLRD  359
            FTTMQKFEPEQNET MA+LTERKNV+VMADEAHRTQYGFNA+YDD+GEGIKYGYAKYLRD
Sbjct  382  FTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRD  441

Query  360  ALPNATFVGFTGTPVASTDKNTQMVCGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQ  419
            ALPNATFVGFTGTPVASTDKNTQMV GNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQ
Sbjct  442  ALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQ  501

Query  420  NLDLDEAYNDITEDQKEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKA  479
            +LDLDEAYNDITEDQ EDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMK+
Sbjct  502  SLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKG  561

Query  480  KGMIVTMSRRIDVDLYDEIIRLKPEWHLDDDDKGVIKVVMTGSSSDPASFQRHIGPKKRH  539
            KGMIVTMSRRI VDLYDEIIRLKPEWH DDDDKGVIKVVMTGSSSDP+SFQRHIGPKKR+
Sbjct  562  KGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRR  621

Query  540  NLLEKHMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDK  599
            ++LEK+MKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDK
Sbjct  622  SVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDK  681

Query  600  PGGLIVDYVGIAESLKEALKEYTESDQAQTTIDTDKAVELMLLKYDVIQDMLYNLDYSKF  659
            PGGLIVDYVGIAESLKEALKEYTESDQAQT+IDTDKAVELMLLKYDVIQDMLYNLDYSKF
Sbjct  682  PGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKF  741

Query  660  NSDKKSERYYTISNTMDYVIGLGE-ERQRFIKTVTELGKAFALCATEPTAQELNDEIAFF  718
            NS+KKSERYYTISNTMDYVIGLGE ERQRFIKTVTELGKAFALCATEPTAQELNDEIAFF
Sbjct  742  NSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFF  801

Query  719  KAVKAGLVKLL-PPKEGKTRKTPAEIEA  745
            KAVKAGLVKLL PPKEGKTRKTPAE+EA
Sbjct  802  KAVKAGLVKLLQPPKEGKTRKTPAEVEA  829

8) SABB_01782 in NC_021670


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score = 1165 bits (4420),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 714/729 (98%), Positives = 724/729 (99%), Gaps = 0/729 (0%)

Query  1     MVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELK  60
             MVFFSGKLIQMLNNPTLV+VTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELK
Sbjct  311   MVFFSGKLIQMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELK  370

Query  61    SLLSVESGGIVFTTMQKFEPEQNETTMSALTERKNVIVMADEAHRTQYGFNAKYDDKGEG  120
             SLLSVESGGIVFTTMQKFEPEQNET M+ALTERKNVIVMADEAHRTQYGFNAKYDDKGEG
Sbjct  371   SLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFNAKYDDKGEG  430

Query  121   IKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYY  180
             IKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYY
Sbjct  431   IKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYY  490

Query  181   ESRIIPLNLPQNLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQ  240
             ESR+IPLNLPQ+LDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQ
Sbjct  491   ESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQ  550

Query  241   HFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTS  300
             HFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTS
Sbjct  551   HFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTS  610

Query  301   FQRHIGPKKRRNLLEKRMKDMNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQA  360
             FQRHIGPKKRR++LEKRMKD+NDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQA
Sbjct  611   FQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQA  670

Query  361   IARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVELMLLKYDVIQ  420
             IARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVELMLLKYDVIQ
Sbjct  671   IARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVELMLLKYDVIQ  730

Query  421   DMLYNLDYSKFNSEKKSERYYAISDTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPT  480
             DMLYNLDYSKFNSEKKSERYY+IS+TMDYVIGLGEDERQRFIKTVTELGKAFALCATEPT
Sbjct  731   DMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPT  790

Query  481   AQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQT  540
             AQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQT
Sbjct  791   AQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQT  850

Query  541   LGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGN  600
             LGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGN
Sbjct  851   LGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGN  910

Query  601   SINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMG  660
             SINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDAL SHETAK AM 
Sbjct  911   SINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAME  970

Query  661   DKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVE  720
             DK LRAIAHELTKTVKENM+VDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVE
Sbjct  971   DKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVE  1030

Query  721   QAELMASNQ  729
             QAELMASNQ
Sbjct  1031  QAELMASNQ  1039

9) SAT0131_02861 in NC_017347


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score = 1127 bits (4274),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 713/729 (98%), Positives = 723/729 (99%), Gaps = 0/729 (0%)

Query  1     MVFFSGKLIQMLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELK  60
             MVFFSGKLIQMLNNPTLV+VTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELK
Sbjct  311   MVFFSGKLIQMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELK  370

Query  61    SLLSVESGGIVFTTMQKFEPEQNETTMSALTERKNVIVMADEAHRTQYGFNakyddkggg  120
             SLLSVESGGIVFTTMQKFEPEQNET M+ALTERKNVIVMADEAHRTQYGFNAKYDDKG G
Sbjct  371   SLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFNAKYDDKGEG  430

Query  121   ikygyakyLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYY  180
             IKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYY
Sbjct  431   IKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYY  490

Query  181   ESRIIPLNLPQNLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQ  240
             ESR+IPLNLPQ+LDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQ
Sbjct  491   ESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQ  550

Query  241   HFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTS  300
             HFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTS
Sbjct  551   HFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTS  610

Query  301   FQRHIGPKKRRNLLEKRMKDMNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQA  360
             FQRHIGPKKRR++LEKRMKD+NDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQA
Sbjct  611   FQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQA  670

Query  361   IARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVELMLLKYDVIQ  420
             IARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVELMLLKYDVIQ
Sbjct  671   IARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVELMLLKYDVIQ  730

Query  421   DMLYNLDYSKFNSEKKSERYYAISDTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPT  480
             DMLYNLDYSKFNSEKKSERYY+IS+TMDYVIGLGEDERQRFIKTVTELGKAFALCATEPT
Sbjct  731   DMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPT  790

Query  481   AQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQT  540
             AQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQT
Sbjct  791   AQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQT  850

Query  541   LGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGN  600
             LGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGN
Sbjct  851   LGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGN  910

Query  601   SINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALASHETAKEAMG  660
             SINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDAL SHETAK AM 
Sbjct  911   SINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAME  970

Query  661   DKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVE  720
             DK LRAIAHELTKTVKENM+VDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVE
Sbjct  971   DKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVE  1030

Query  721   QAELMASNQ  729
             QAELMASNQ
Sbjct  1031  QAELMASNQ  1039

10) Clocl_3622 in NC_016627


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  988 bits (3746),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 575/1042 (56%), Positives = 816/1042 (79%), Gaps = 18/1042 (1%)

Query  8     EDELEQAALEWFEELGYETIFAPDISPGGDYPERSDYSDVILEERLKDALKRINPDLPQE  67
             ED+LEQ  LEW+E L+Y+   + +IS  G  PER    DV+L+ERL  AL++IN+D+   
Sbjct  7     EDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHPR  66

Query  68    ALDDALHQILVPLNPALIDNNHLFQKMVTDGVNATFRANDGRIVSKQVRIFDFEKAENND  127
              ++ A+H++ +  +P L++NN  F+  + +G++     ++G+ +   V+I DFE ++NND
Sbjct  67    FIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNND  126

Query  128   FLAVNQFTVIENRVEKRPDVVVFVNGIPLVVIELKNLANEDVEISDAYNQIQNYISTIPS  187
             FLAVNQFTV++    KRPD+V+F+NG+P+VVIELKN +NE V + D+Y+Q++ Y   IP 
Sbjct  127   FLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQ  186

Query  188   LFTYNAFAVISDGVNARAGTITADEDRFMMWRTIDGDEIAPLSRPQLEVLIKGMFDKERL  247
             LFT+N   V SDG+N++AG++TA+ DRFM WR+ DG+  ++ S + L+VLI+GM++   L
Sbjct  187   LFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPKTL  246

Query  248   LDIIKNFILFQTDGKDTY-KILAGYHQYHAVNKAVESTIRAAITEGDRKIGVVWHTQGSG  306
             LD+I+ F+LFQ DGK+   KILA+YHQY AVNKAV+ ++ A+  +GD K GV+WHTQGSG
Sbjct  247   LDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQGSG  306

Query  307   KSLSMVFYVGKLVLSKELNNPTIVVITDRNDLDDQLFSTFAKSKD-----LLRQEPVQAQ  361
             KSL+MVF+ GKL+  + LNNPT+V++TDRNDLD+QL+STF KSK+     LLRQ P QA+
Sbjct  307   KSLTMVFFSGKLI--QMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAE  364

Query  362   DRADLRKLLTRESGGIIFTTIHKFAPEEKGDSVPVLTDRENVIVIADEAHRSQYGFRAEI  421
              R +L+ LL+ ESGGI+FTT++KF PE++   ++ LT+R NVIV+ADEAHR+QYGF A  
Sbjct  365   TRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFNAKY  424

Query  422   VKGDTEADVKYGYAKYMRDALPNASFIGFTGTPISLADKDTRAVFGDYIDIYDMTRAVED  481
               +D   ++KYGYAKY+RDALPNA+F+GFTGTP++ +DK+T+ VFG+YID+YDMT+AV D
Sbjct  425   --DDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVAD  482

Query  482   GTTVRIFYESRIAKLELPDELKPViddeyeeiteyqeytqKEKLKTKWSRLEAIVGAEQR  541
             G+TV+I+YESR+  L+LP+ L   +D+ Y++ITE QE   K++LK+KWSR+EA+ GA  R
Sbjct  483   GSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPR  540

Query  542   VKAIAKDIVEHFEKRLAAQETEVGKGMIVVMSRRIAIDLYKAIVELRPEWHSDDIDKGVI  601
             V A+AKDI++HFE R   Q++  GKGMIV MSRRIA+DLY  I+ L+PEWHSDD DKGVI
Sbjct  541   VEALAKDIIQHFETR---QQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVI  597

Query  602   KVVMTGSSSDPKEWQPFIGTKATRERIAKRMKDNKDELKLVIVRDMWLTGFDVPSMHTMY  661
             KVVMTGSSSDP   Q  IG K  R  + KRMKD +DEL+LVIVRDMWLTGFDVPSMHTMY
Sbjct  598   KVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMY  657

Query  662   IDKPMQGHNLMQAIARVNRVFKEKQGGLIVDYIGIAENLKNALNDYTESDREKTGVDTEV  721
             IDKPM+GHNLMQAIARVNRVFK+K GGLIVDY+GIAE+LK+AL++YTESD+ +T++DT+ 
Sbjct  658   IDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDK  717

Query  722   AAAVLVEKYELIKELLHGHDYQKFFTGSASERMSAIVETIDYIIGLREERKNDYLKLVSE  781
             A  +++ KY++I+++L   DY KF +   SER  +I +T+DY+IGL E+ ++ ++K V+E
Sbjct  718   AVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTE  777

Query  782   LSRAYSLCATTDIAEKLNLEVGFHKAVKSGIIKLIP---ENSRKKTAAEIEAQLNQLVSK  838
             L++A++LCAT   A+ LN E++F KAVK+G++KL+    E   +KT+AE+EA++NQLVS+
Sbjct  778   LGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQ  837

Query  839   SISSNEVIDVLDAVGLNKPNIAILSDEFLEEVRNMKQRNLAVELLNRLLKGKIKTFSKRN  898
             S+ +++VIDV +++GL++P+++ILSD+FL +V  +KQ+N+AVELLNRLLKG++K++ K N
Sbjct  838   SVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTN  897

Query  899   LVQSRKFSELLENAIRKYQNRTIETTQVILELIQLAKEINEAHKRGENTGLTEDELAFYD  958
                S++FSE+L N+I KY++R+IET++VI ELIQLAK+I++ ++RG++ GL  DE+AFYD
Sbjct  898   ATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYD  957

Query  959   ALAENESAKEVMGDDILKQIARDLTEAIRKNISIDWSIRASVQAKMKMIIKRLLKRYGYP  1018
             AL  +E+AK  M D  L+ IA++LT +++ N+S+DWS R S +AKM++ ++RLLK+YGYP
Sbjct  958   ALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYP  1017

Query  1019  PDKTPKAVEIVMEQAKLMCQNE  1040
             PD    AVE V+EQA LM  N+
Sbjct  1018  PDLQKMAVEQVVEQAELMASNQ  1039

11) Desdi_0311 in NC_019903


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  985 bits (3733),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 569/1064 (54%), Positives = 824/1064 (78%), Gaps = 37/1064 (3%)

Query  4     NFCESHLEEATLEWFEELGYEIVFAPDIAPDGDYPERGDYGDITLNDRLKEALQRINPRM  63
             +F E +LE+  LEW+E L+Y+   + +I+  G  PER    D+ L++RL  AL++IN+ +
Sbjct  4     QFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDI  63

Query  64    RPDALEDAFRQITIPQSPSLIMNNKAFQKMITDGIDVQVKQADASYRTEKVYVFDFEKPL  123
             +P  +E A++++T+ +SP+L+ NN +F+  + +GI+++  + ++    E V + DFE P 
Sbjct  64    HPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQ  123

Query  124   NNEFMVANQFTFIEHGVEKRPDVIAFVNGIPLVVMELKSASDENVDITDAYNQLQTYKMT  183
             NN+F+  NQFT ++ +  KRPD++ F+NG+P+VV+ELK++++E V++ D+Y+QL+TYKM 
Sbjct  124   NNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  184   IPSLFTYNSFLVTSDGVNARAGTLTSDEDRFMAWRTIDGETTAPLSIPQLEVLIKGMFQR  243
             IP LFT+N  LVTSDG+N++AG+LT++ DRFM+WR+ DGET ++ S++ L+VLI+GM++ 
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNP  243

Query  244   DRFLDIIRHFVLFQSDSQDTI-KILAGYHQYHAVNKAIESTERATQESGDRRIGVIWHTQ  302
               +LD+IR FVLFQ D+++ I KILA+YHQY AVNKA++ +  A+   GD + GVIWHTQ
Sbjct  244   KTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQ  303

Query  303   GSGKSLSMVFYAGKLVINEGLENPTIVIITDRNDLDDQLFGTFLKSKG-----ILRSTPV  357
             GSGKSL+MVF++GKL+  + L+NPT+VI+TDRNDLD+QL++TF+KSKG     +LR TP 
Sbjct  304   GSGKSLTMVFFSGKLI--QMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPK  361

Query  358   QATDRTHLRDLLNNRTSGGIIFTTIHKFAPVAKEAKEECELDRAAEATALYRTEDMVLTD  417
             QA  R +L+ LL+   SGGI+FTT++KF P  +E+                      LT+
Sbjct  362   QAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAA------------------LTE  402

Query  418   RKNVIVMADEAHRSQYGFEAEIMKGDDEANVKYGYAKYMRDSLPNASYIGFTGTPVELTD  477
             RKNVIVMADEAHR+QYGF+A    +D    +KYGYAKY+RD+LPNA+++GFTGTPV  TD
Sbjct  403   RKNVIVMADEAHRTQYGFNAKY--DDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTD  460

Query  478   KNTRAVFGDYIDVYDMTRAVEDGTTVKIFYESRIAKLELPEELKPKVDTEYDEITEYQEY  537
             KNT+ VFG+YIDVYDMT+AV DG+TVKI+YESR+  L+LP+ L   +D  Y++ITE QE 
Sbjct  461   KNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEE  518

Query  538   TQKEKLKSKWARLEAIVGASERVKQIAKDIVEHFEKREQAQENAGGKAMIVAMSRRIAID  597
               K++LKSKW+R+EA+ GA  RV  +AKDI++HFE R+QA     GK+MIV+MSRRIA+D
Sbjct  519   DVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMK---GKGMIVTMSRRIAVD  575

Query  598   LYQEIVTIRPEWHSDDLMAGKIKVVMTGASSDPAEWQKFIGKKASRETLAKRMKDKNDEL  657
             LY+EI+ ++PEWHSDD   G IKVVMTG+SSDP+  Q+ IG K  R  L KRMKD NDEL
Sbjct  576   LYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDEL  635

Query  658   KLVIVRDMWLTGFDVPSMHTMYIDKPMQGHNLMQAIARVNRVFKEKQGGLIVDYIGIAEN  717
             +LVIVRDMWLTGFDVPSMHTMYIDKPM+GHNLMQAIARVNRVFK+K GGLIVDY+GIAE+
Sbjct  636   QLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAES  695

Query  718   LKEALAQYTESDKKTTGVDTEVAGQELLIRHDLIKELLHGHDYSKFFTGKPSEKMQAIVE  777
             LKEAL +YTESD+  T++DT+ A + +L++ D+I+++L   DYSKF + K SE+  +I +
Sbjct  696   LKEALKEYTESDQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISN  755

Query  778   TMDYIIGLREDRKNDYIKLVTEMARAYSLCATTDIAESLNVEVGFHKAVKASLVKMI---  834
             TMDY+IGL ED ++ +IK VTE+++A++LCAT   A+ LN E++F KAVKA+LVK++   
Sbjct  756   TMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPP  815

Query  835   SNDNRKKTTTQLDSELNQLISKSISSNEVIDILSSVGLSKPNIAILSEEFLEEVKGMKQK  894
              +++ +KT +++++E+NQL+S+S+ +++VID+  ++GL +P+++ILS++FL +V G+KQK
Sbjct  816   KEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQK  875

Query  895   NLAVELLNRLLKGGIKTFSRRNLVQSKKFSELLDAAIRKYQNRAIETTQVIMELIELAKQ  954
             N+AVELLNRLLKG +K++ + N   SK+FSE+L+ +I KY++R+IET++VI ELI+LAK+
Sbjct  876   NVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKD  935

Query  955   ISEAEKRGESTGLTPDELAFYDALADNDSAREIMGDEILKQIARDLTQSIKKNISVDWAI  1014
             I + ++RG+  GL +DE+AFYDAL  +++A+  M D  L+ IA++LT+++K N+SVDW+ 
Sbjct  936   IKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSK  995

Query  1015  RESVQAKMKMTIKRLLKKYGYPPDKTAKAVDIVMEQTKLMCQNE  1058
             R+S +AKM+++++RLLKKYGYPPD    AV+ V+EQ+ LM  N+
Sbjct  996   RDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASNQ  1039

12) hsdR in NC_010337


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  964 bits (3651),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 574/1047 (55%), Positives = 827/1047 (79%), Gaps = 23/1047 (2%)

Query  7     FCESELEEAALEWFQELNYETAFAPELSPGGDYPEREDYGDVILQDRLRDALQRINPHLP  66
             F E +LE+  LEW++ L+Y+   + E+S  G  PER    DV+L++RL  AL++IN+++ 
Sbjct  5     FNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIH  64

Query  67    PEAIEDAYRQIAIPQSPSLLMNNKAFHKLITDGIDI-SYRHKGGAVRYAKAMVFDFDPCR  125
             P  IE A +++++ +SP+LL NN +FH  + +GI+I  Y + G ++      + DF+  +
Sbjct  65    PRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIV-EIVKIVDFE--H  121

Query  126   VDNNDWLVVNQFTVIENRVEKRPDMVVFVNGIPLVVIELKSSSDEEVGISEGFNQLQTYK  185
              +NND L VNQFTV++    KRPD+V+F+NG+P+VVIELK+S++E VG+ +G++QL+TYK
Sbjct  122   PQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYK  181

Query  186   QTIPSLFTYNAFMVTSDGINARAGTLTADEDRFMMWRTIDGDDVAPLSIPQLEVLIKGMF  245
               IP LFT+N  +VTSDGIN++AG+LTA+ DRFM WR+ DG+  ++ S++ L+VLI+GM+
Sbjct  182   MRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGML  241

Query  246   DKRRLLDIVRHFITFQTDGRDTY-KLLAGYHQYHAVNKAVDSTVRATLEKGDRRIGVIWH  304
             + + LLD++R F+ FQ DG++   K+LA+YHQY AVNKAVD ++ A+  +GD + GVIWH
Sbjct  242   NPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWH  301

Query  305   TQGSGKSLSMVFYTGKLVLAEELDNPTIVVITDRNDLDDQLFGAFARSKD-----LLRQT  359
             TQGSGKSL+MVF++GKL+  + L+NPT+V++TDRNDLD+QL+++F +SK+     LLRQT
Sbjct  302   TQGSGKSLTMVFFSGKLI--QMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQT  359

Query  360   PVQAKdradlrrllereaggIIFTTIHKFAPEAKGDRIPVLTDRKNVIVIADEAHRSQYG  419
             P QA  R +L+ LL  E+GGI+FTT++KF PE +   ++ LT+RKNVIV+ADEAHR+QYG
Sbjct  360   PKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYG  419

Query  420   FGADVVEGKDEADIKYGYAKYMRDALPNASYIGFTGTPIELTDKNTRAVFGDYIDIYDMT  479
             F A   ++K+E+ IKYGYAKY+RDALPNA+++GFTGTP+  TDKNT+ VFG+YID+YDMT
Sbjct  420   FNAKY-DDKGEG-IKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMT  477

Query  480   RAVEDGTTVKIYYESRIAKLDLPDEMKPVVDeeyeeitehqeyeqkeKLKSKWSRLEAIV  539
             +AV DG+TVKIYYESR+  L+LP+ +   +DE Y++ITE+QE + K++LKSKWSR+EA+ 
Sbjct  478   QAVADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALA  535

Query  540   GADERIQVVARDIVEHFEKRQAAQETAVGKAMIVVMSRRIAVDLYHAIVTLRPEWHSDDL  599
             GA  R++ +A+DI++HFE RQ A     GK+MIV MSRRIAVDLY+ I+ L+PEWHSDD 
Sbjct  536   GAKPRVEALAKDIIQHFETRQQAMK---GKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDD  592

Query  600   DRGVIKVVMTGGSADPKEWQPFIGTKATRDRLAKRMKDNDDELKLVIVRDMWLTGFDVPS  659
             D+GVIKVVMTG+S+DP   Q  IG K  R  L KRMKD +DEL+LVIVRDMWLTGFDVPS
Sbjct  593   DKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPS  652

Query  660   MHTMYIDKPMGGHNLMQAIARVNRVFREKQGGLVVDYIGIAENLKAALRDYTESDKQTTG  719
             MHTMYIDKPM GHNLMQAIARVNRVF++K GGL+VDY+GIAE+LK AL++YTESD+  T+
Sbjct  653   MHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTA  712

Query  720   VDTDQAAEVMLEKYDLIQEMLHGHDYSKFFTGKASDRMQAIVETIDFVIGL-RERKDEYM  778
             +DTD+A E+ML KYD+IQ+ML   DYSKF + K S+R  +I +T+D+VIGL  + ++ ++
Sbjct  713   IDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFI  772

Query  779   RLVTELSKAYSLCATTDAAEKLNLEVGFHKAVKAGIIKMIP---ENTKKRTGAHLDAQLN  835
             + VTEL+KA++LCAT  +A+ LN E++F KAVKAG++K++    E   ++T A+++A++N
Sbjct  773   KTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEIN  832

Query  836   QLISKSISSNEVIDILQAVGLQKPNIAILSDEFLEEVRVMKQKNLAVELLNRLLKGKVKA  895
             QL+S+S+ +++VID+ Q++GL++P+++ILSD+FL +V  +KQKN+AVELLNRLLKG+VK+
Sbjct  833   QLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKS  892

Query  896   FARKNLILSKKFSEMLEQAIKKYQNRTIETTQVIIELIELAKEVNKAHGRGENTGLTEDE  955
             + + N  +SK+FSEML ++I+KY++R+IET++VI ELI+LAK++++ + RG++ GL  DE
Sbjct  893   LMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDE  952

Query  956   LAFYDALADNESARELMGDEILKQIARDLTQQIKRNMTVDWSLRSSVQARMKMIIKRLLK  1015
             +AFYDAL  +E+A+  M D  L+ IA++LT+ +K NM+VDWS R S +A+M++ ++RLLK
Sbjct  953   IAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLK  1012

Query  1016  KYNYPPDNREKALSTVMEQARLLCVSE  1042
             KY YPPD +  A+  V+EQA L+  ++
Sbjct  1013  KYGYPPDLQKMAVEQVVEQAELMASNQ  1039

13) DCF50_p1408 in NC_018867


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  963 bits (3650),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 574/1045 (55%), Positives = 812/1045 (78%), Gaps = 19/1045 (1%)

Query  7     FCESELEQATLEWFEELNYDIIFAPDIAPDGEYAEREDYSDVILQERLKEALARINPTLP  66
             F E +LEQ  LEW+E L+YD   + +I+  G  +ER    DV+L+ERL  AL +IN+ + 
Sbjct  5     FNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIH  64

Query  67    EDALEDAFRRILIPQSPSLLMNNKAFQKMVTDGVDVSYRQKDGTIKYTQAKVFDFEKVNN  126
                +E A++ + + +SP+LL NN +F+  + +G+++   + +G       K+ DFE  +N
Sbjct  65    PRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQN  124

Query  127   NDWVAANQFTVVENRVDKRPDVVVFVNGIPLVVIELKNASNEDVDISDGYNQLQTYKMSI  186
             ND +A NQFTVV+    KRPD+V+F+NG+P+VVIELKN++NE V++ DGY+QL+TYKM I
Sbjct  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  187   PSLFTYNSFMVTSDGINARAGTLTSDEDRFMAWRTIEGDEVASLSIPQLEVLIKGMFDKE  246
             P LFT+N  +VTSDGIN++AG+LT++ DRFM+WR+ +G+  +S S++ L+VLI+GM++  
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPK  244

Query  247   RFLDIIKQFILFQTDGSDTF-KILAGYHQYHAVNKAVESTERATMETGDRRIGVVWHTQG  305
              +LD+I+ F+LFQ DG + + KILA+YHQY AVNKAV+ +  A+   GD + GV+WHTQG
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQG  304

Query  306   SGKSLSMVFYAGKLVISEELENPTIVIITDRNDLDDQLFTTFAKSKD-----LLRGEPQQ  360
             SGKSL+MVF++GKL+  + L+NPT+VI+TDRNDLD+QL++TF KSK+     LLR  P+Q
Sbjct  305   SGKSLTMVFFSGKLI--QMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQ  362

Query  361   AEDRGHLRELLNNRTSGGIIFTTIHKFAPEDKGDSVPVLTDRKNVIVMADEAHRSQYGFG  420
             AE R +L+ LL+   SGGI+FTT++KF PE++   ++ LT+RKNVIVMADEAHR+QYGF 
Sbjct  363   AETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFN  421

Query  421   ADVVKSETEASVKYGYAKYMRDSLPNASYIGFTGTPVELTDKNTRAVFGDYIDVYDMTRA  480
             A     +   ++KYGYAKY+RD+LPNA+++GFTGTPV  TDKNT+ VFG+YIDVYDMT+A
Sbjct  422   AKY--DDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQA  479

Query  481   VQDETTVKIFYESRIAKLDLPEDLKPKIDTEYDEITEYQEYNQKEKLKSRWSRLEAIVGA  540
             V D +TVKI+YESR+  L+LP+ L   +D  Y++ITE QE + K++LKS+WSR+EA+ GA
Sbjct  480   VADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGA  537

Query  541   EKRIQVVAKDIVEHFEKRQAAQEYEGGKAMIVAMSRRIAIDLYKEIVLLRPDWHSDELME  600
               R++ +AKDI++HFE RQ A     GK+MIV+MSRRIA+DLY EI+ L+P+WHSD+   
Sbjct  538   KPRVEALAKDIIQHFETRQQAMK---GKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDK  594

Query  601   GKIKVVMTGASSDPADWQKFIGTKATRKALDKRMKDKNDELQLVIVRDMWLTGFDVPSMH  660
             G IKVVMTG+SSDP+  Q+ IG K  R  L+KRMKD NDELQLVIVRDMWLTGFDVPSMH
Sbjct  595   GVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMH  654

Query  661   TMYIDKPMQGHNLMQAIARVNRVFKEKQGGLVVDYIGIAENLKEALSKYTESDKKTTGVD  720
             TMYIDKPM+GHNLMQAIARVNRVFK+K GGL+VDY+GIAE+LKEAL  YTESD+  T++D
Sbjct  655   TMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAID  714

Query  721   TDVAAELLLEKHDLIKELLHGHDYSKFFTGSAREKMQAIVETMDYIIGLREDRKNDYIKL  780
             TD A EL+L K D+I+++L   DYSKF +    E+  +I +TMDY+IGL ED ++ +IK 
Sbjct  715   TDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKT  774

Query  781   VTELTRAYSLCATTDIAERLNVEIGFHKSVKAGIVKMI---TDNTKKKTNSQLDSELNQL  837
             VTEL +A++LCAT   A+ LN EI+F K+VKAG+VK++    +   +KT +++++E+NQL
Sbjct  775   VTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQL  834

Query  838   ISKSISSDEVIDILEAVGLQKPNIAILSDEFLEEVKGMKQKNLAVELLNRLLKGSIKAFS  897
             +S+S+ +++VID+ +++GL++P+++ILSD+FL +V G+KQKN+AVELLNRLLKG +K++ 
Sbjct  835   VSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLM  894

Query  898   KRNLVQSKKFSELLENALKKYQNRTIETTQIIMELIELAKEINEAKKRGENSGLTADELA  957
             K N   SK+FSE+L N+++KY++R+IET+++I ELI+LAK+I++ ++RG++ GL +DE+A
Sbjct  895   KTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIA  954

Query  958   FYDALSFDEAAKGELSDDILKQIARDLTDSLKRNMSVDWNIRSSVQSkmkmiikrllkkY  1017
             FYDAL  +E+AK  + D  L+ IA++LT ++K NMSVDW+ R S ++KM++ ++RLLKKY
Sbjct  955   FYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKY  1014

Query  1018  GYPQDKRDQATETVLEQARLMCVNE  1042
             GYP D +  A E V+EQA LM  N+
Sbjct  1015  GYPPDLQKMAVEQVVEQAELMASNQ  1039

14) Amico_0451 in NC_014011


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  944 bits (3577),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 552/1043 (53%), Positives = 792/1043 (76%), Gaps = 40/1043 (3%)

Query  26    APDIAPEGTYPERTYYSDVVLTERLKEALARINPDLPDDALEDGFRQIMFPQSPSLIMNN  85
             + +I+  G  PER    DVVL ERL  AL +IN+D+    +E +++++ + +SP+L+ NN
Sbjct  28    GNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHPRFIEKAIHELTLEKSPNLLENN  87

Query  86    KTFQKMITDGIDVQVKQEDGGYRTEKAYIFDLEAPSNNDFLVANQFTVVEHDKEKRPDIV  145
              TF+  + +GI+++  +++G    E   I D+E P NNDFL  NQFTVV+ D  KRPDIV
Sbjct  88    LTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNNDFLAVNQFTVVNGDYTKRPDIV  147

Query  146   VFVNGIPLVVIELKNASDENVDITDAFNQLQTYKKTIPSLFTYNSFTVISDGVNARAGTL  205
             +F+NG+P+VVIELKN+++E V++ D+++QL+TYK  IP LFT+N   V SDG+N++AG+L
Sbjct  148   LFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTSDGINTKAGSL  207

Query  206   TSNEDRFMAWRTIDGDDVAPLCIPQLEVLIKGMFLKDRFLDIIRHFVLFQSDGK-EIKKI  264
             T+N DRFM+WR+ DG+  ++  ++ L+VLI+GM+    +LD+IR FVLFQ DGK +I KI
Sbjct  208   TANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPKTLLDLIRYFVLFQDDGKGHISKI  267

Query  265   LAGYHQYHAVNKALQSTQRATMEQGDRRVGVIWHTQGSGKSLSMVFYAGKLVIDEELENP  324
             LA+YHQY AVNKA++ +  A+  QGD + GVIWHTQGSGKSL+MVF++GKL+  + L+NP
Sbjct  268   LAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQGSGKSLTMVFFSGKLI--QMLNNP  325

Query  325   TIVVITDRNDLDDQLFSTFLKSEE-----LLRNTPVQAQDRVHLRELLNNRTSGGIIFTT  379
             T+V++TDRNDLD+QL+STF+KS       LLR+TP QA+ R +L+ LL+   SGGI+FTT
Sbjct  326   TLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSV-ESGGIVFTT  384

Query  380   IQKFAPFTNETNGEVIDFNRWGRVAENSSPYTANTMLTDRRNVVVIADEAHRSQYGFGAE  439
             +QKF P   E N  ++                  + LT+R+NV+V+ADEAHR+QYGF A 
Sbjct  385   MQKFEP---EQNETIM------------------AALTERKNVIVMADEAHRTQYGFNAK  423

Query  440   IVMGKTEADVKYGYAKYMRDSLPNASYIGFTGTPVELTDKNTRVVFGDYIDIYDMTRAVE  499
                +    ++KYGYAKY+RD+LPNA+++GFTGTPV  TDKNT++VFG+YID+YDMT+AV 
Sbjct  424   Y--DDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVA  481

Query  500   DGTTVKIFYESRIAKLDLPEEMKPQIDSEYEEITEYQEYSQKERLKSKWARLEAIVGTEQ  559
             DG+TVKI+YESR+  L+LP+ +  ++D  Y++ITE QE   K+RLKSKW+R+EA+ G+  
Sbjct  482   DGSTVKIYYESRVIPLNLPQSL--DLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKP  539

Query  560   RIKQIAKDIVEHFEKRDLAQENEGGKGMIVAMSRRIAIDLYKEIVALRPDWHSDDLMSGK  619
             R+  +AKDI++HFE R   Q+   GKGMIV+MSRRIA+DLY EI+ L+P+WHSDD   G 
Sbjct  540   RVEALAKDIIQHFETR---QQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGV  596

Query  620   IKVVITGSSSDPSDWQAFIGSKADRETLAKRMKDRNDELKLVIVRDMWLTGFDVPSMHSM  679
             IKVV+TGSSSDP+  Q  IG+K  R  L KRMKD NDEL+LVIVRDMWLTGFDVPSMH+M
Sbjct  597   IKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTM  656

Query  680   YVDKPMSGHNLMQAIARVNRVFKEKQGGLVVDYIGIAENLKNALAQYTESDKKTTGVDTE  739
             Y+DKPM GHNLMQAIARVNRVFK+K GGL+VDY+GIAE+LK+AL +YTESD+  T++DT+
Sbjct  657   YIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTD  716

Query  740   VASQVLLEKYDLIKELLHGHSYEKFFTGRQSEKMQAITETMDFIIGLREDRKNDYINLVT  799
              A +++L KYD+I+++L    Y KF + ++SE+  +I++TMD++IGL ED ++ +I+ VT
Sbjct  717   KAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVT  776

Query  800   EMARAYSLCATTDTAETLNVEVGFHKAVRACLHKIM---SDGSKKKTTSQLDNELNQLIS  856
             E+++A++LCAT  TA+ LN E++F KAV+A L K++    +G  +KT ++++ E+NQL+S
Sbjct  777   ELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVS  836

Query  857   KAISSNEVVDILSSVGLSKPNIAILSDEFLEEVKGMRQKNLAVELLNRLLKGSIKNFSRR  916
             +++ +++V+D+  ++GL +P+++ILSD+FL +V G++QKN+AVELLNRLLKG +K++ + 
Sbjct  837   QSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKT  896

Query  917   NLVQSKRFSEMLEASIRKYQNRTIETTQVIMELIELAKEISGAEKRGESTGLTSDELAFY  976
             N   SKRFSEML  SI KY++R+IET++VI ELI+LAK+I   ++RG+  GL SDE+AFY
Sbjct  897   NATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFY  956

Query  977   DALADNESARDVMGDEILMQIAKDLTLSIRRNISVDWAIRENVQAKMKMDIKRLLKRYNY  1036
             DAL  +E+A+  M D  L  IA +LT +++ N+SVDW+ R++ +AKM++ ++RLLK+Y Y
Sbjct  957   DALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGY  1016

Query  1037  PPDKTPQAVDTVIAQAKLMCQKE  1059
             PPD    AV+ V+ QA LM  ++
Sbjct  1017  PPDLQKMAVEQVVEQAELMASNQ  1039

15) Cyan7822_0695 in NC_014501


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  925 bits (3505),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 520/1044 (50%), Positives = 793/1044 (76%), Gaps = 26/1044 (2%)

Query  1     MKPNFSESVVEDATLAWFELLGYTVCHASEL-------DRQSYSDIILTDSLQTALKKIN  53
             M+ +F+E  +E+  L W+E L+Y    ++E+       +R+S  D++L + L+ AL+KIN
Sbjct  1     MNFQFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKIN  60

Query  54    PQIPSETLQEVIKKITRSDTPNLIENNLRFHKLLTDGVDVE-YQQDGRTKYDKVWLIDFK  112
             ++I +  ++  I  +T   +PNL+ENNL FH  L +G+++E Y+++G++  + V ++DF 
Sbjct  61    SDIHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFE  120

Query  113   HPENNQYLAANQLTVTEGKNTRRPDVVIFINGLPIAVIELKNPADENATITGAFNQLQTY  172
             HP+NN++LA NQ+TV +G  T+RPD+V+FINGLPI VIELKN+++E   + ++++QL+TY
Sbjct  121   HPQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  173   KQEIPSLFSTNELLIISDGTEARIGTLTADWERFAPWRTVDGENIAPKRVAELETLIRGV  232
             K  IP LF+ NE+L+ SDG +++ G+LTA+ +RF  WR+ DGE  ++  +A L+ LI G+
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGM  240

Query  233   FPPKTLLDILQSFIVFETDGDT-ITKKLAGYHQYHAVNKAITATLEATHPQGDKKVGVVW  291
             + PKTLLD+++ F++F+ DG   I+K LA+YHQY AVNKA+  +L A+  QGD K GV+W
Sbjct  241   LNPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIW  300

Query  292   HTQGSGKSLTMAFYAGKIIQQPEMANPTLVILTDRNDLDDQLFNTFSLCTD-----LLRQ  346
             HTQGSGKSLTM F++GK+IQ   + NPTLVI+TDRNDLD+QL++TF    +     LLRQ
Sbjct  301   HTQGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQ  358

Query  347   TPTQAESREQLQELLKVASGGVIFTTIQKFSPEYGNQY-PLLSNRRNIILIADEAHRSQY  405
             TP QAE+R +L+ LL V SGG++FTT+QKF PE  +   + L++R+N+I++ADEAHR+QY
Sbjct  359   TPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQY  418

Query  406   GLEAKVINKQEEAYISYGFAKYLRDALPNASFIGFTGTPIEAGDINTPAVFGDYIDIYDI  465
             G++AK  +K E   I YG+AKYLRDALPNA+F+GFTGTP+ + D NT  VFG+YID+YD+
Sbjct  419   GFNAKYDDKGEG--IKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDM  476

Query  466   QRAVEDEATVKIYYEGRLAKIDLEPSERPNIDPNFeevtedeetttkeklkskWARLEAL  525
              +AV D +TVKIYYE+R+  ++L  ++  ++D  ++++TED+E   K++LKSKW+R+EAL
Sbjct  477   TQAVADGSTVKIYYESRVIPLNL--PQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEAL  534

Query  526   VGAEKRINQIAQDIVTHFENRLASIDGKAMIVCMSRRICVDLYNAIIKLKPDWHHDEDKG  585
              GA  R++ +A+DI+ HFE R  ++ GK+MIV MSRRI VDLY+ II+LKP+WH D+D  
Sbjct  535   AGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDK  594

Query  586   GIIKVVMTGSASDDPLFQPHIRNKKRRKDLAKRFKNPNDEMKLVIVRDMWLTGFDAPCLH  645
             G+IKVVMTGS+SD   FQ HI  KKRR  L KR K+ NDE++LVIVRDMWLTGFD P +H
Sbjct  595   GVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMH  654

Query  646   TLYVDKPMKGHGLMQAIARVNRVFKDKPGGLVVDYLGIADQLKTALNDYTKSDRDDTGIP  705
             T+Y+DKPMKGH LMQAIARVNRVFKDKPGGL+VDY+GIA+ LK AL++YT SD+ +T+I 
Sbjct  655   TMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAID  714

Query  706   VNEALAVCFEKYEIVKAMYHGFNYQPFFTGTPAQRLNTIPAALDHILGI-EDGKERYVKG  764
              + A+ + + KY++++ M   ++Y  F +   ++R  TI+ ++D ++G+ ED ++R++K 
Sbjct  715   TDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKT  774

Query  765   VTELSKAFALVSSTDEAIAIRDEVGFFQAIKAAMVK--HTTTHGG--KSPEEIDAAVRQI  820
             VTEL+KAFAL ++   A  + DE++FF+A+KA++VK  +   +G   K+P E++A + Q+
Sbjct  775   VTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQL  834

Query  821   VSLAVASDEVIDIFAAAGLKNPNIAILSDEFLEEIKGLPYKNVALEILRKLINDDIRSRL  880
             VS +V +++VID++ + GL +P+++ILSD+FL ++ GL  KNVA+E+L +L++++++S +
Sbjct  835   VSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLM  894

Query  881   RRNLIQSRSFREMLENTIKRYQNRSLETAQVINELIELAKDIREAYKRGENLGLTEDEIA  940
             + N   S+ F EML N+I++Y++RS+ET++VI+ELI+LAKDI++  +RG++LGL  DEIA
Sbjct  895   KTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIA  954

Query  941   FYDALEVNDSAVKVLGDDTLKAIARDLVIAIRNNLTIDWTVKETVRAKLRVTIKRLLKKY  1000
             FYDAL  +++A K + D  L+AIA++L  ++++N+++DW+ +++ +AK+RV+++RLLKKY
Sbjct  955   FYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKY  1014

Query  1001  GYPPDKQEKATLTVLQQAELLSVD  1024
             GYPPD Q  A   V++QAEL++ +
Sbjct  1015  GYPPDLQKMAVEQVVEQAELMASN  1038

16) hsdR1 in NC_010163


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  910 bits (3446),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 530/1016 (53%), Positives = 779/1016 (77%), Gaps = 19/1016 (1%)

Query  6     FFESDVEEATLEWFQELGYQTEFGPNIAPEGPYPERASYTDVILIERLKESLFRLNKSLP  65
             F E D+E+  LEW++ L+Y+   G +I+  G  PER S  DV+L ERL  +L ++N  + 
Sbjct  5     FNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIH  64

Query  66    KSAIEDAIRQITIPKQIALIENNRTFHKMITDGVDVSYHDQTGRLVHSQVRIFDFNEPTN  125
                IE AI+++T+ K   L+ENN TFH  + +G+++   D+ G+ +   V+I DF++P N
Sbjct  65    PRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQN  124

Query  126   NDYLVVNQFTVVESRVEKRPDvvvfvnglplvvfELKTASDENVSIKSAFRQVKNYQQSI  185
             ND+L VNQFTVV++   KRPD+V+F+NGLP+VV+ELK +++E V++  +++Q+  Y+  I
Sbjct  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  186   SSLFVYNSFNVISDGLHAKAGTITSDEDRFMTWRTTDGKEIAPTTIPQLETLIKGMFDKK  245
             + LF +N   V SDG+++KAG++T++ DRFMTWR+ DG   ++++++ L+ LI+GM++ K
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPK  244

Query  246   RFLDIIKQYVLFQKHESGYI-KILAGYHQYHAVNTALEKTYEATSAHGDRRIGVIWHTQG  304
              +LD+I+ +VLFQ +  G I KILA+YHQY AVN A++++  A+S++GD + GVIWHTQG
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQG  304

Query  305   SGKSLSMVFYAGKLVISQELSNPTIVIITDRNDLDDQLFLTFSKSSD-----LLRSIPDQ  359
             SGKSL+MVF++GKL+  Q L+NPT+VI+TDRNDLD+QL+ TF KS +     LLR  P Q
Sbjct  305   SGKSLTMVFFSGKLI--QMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQ  362

Query  360   AASREHLKELLNGRDSGGIIFTTIQKFSPDDNGNV-TALTNRKNVIVLADEAHRSQYGFS  418
             A +R +LK LL+  +SGGI+FTT+QKF P++N  + +ALT+RKNVIV+ADEAHR+QYGF+
Sbjct  363   AETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFN  421

Query  419   AKVVKSQDEAFEKYGYAKYLRDSLPNASYIGFTGTPIETTDKNTRAVFGDYIDIYDMSRA  478
             AK     +    KYGYAKYLRD+LPNA+++GFTGTP+ +TDKNT+ VFG+YID+YDM++A
Sbjct  422   AKYDDKGEGI--KYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQA  479

Query  479   VEDKTTVKIFYESRIAQIDFTEEYDLIDENYDEITEYQEETQKEGLKRKWARLEAIVGSE  538
             V D +TVKI+YESR+  +++ +  DL DE Y++ITE QEE  K+ LK KW+R+EA+ G+ 
Sbjct  480   VADGSTVKIYYESRVIPLNLPQSLDL-DEAYNDITEDQEEDVKQRLKSKWSRIEALAGAK  538

Query  539   SRIKTVAKDIVEHFEKRQATMETPVGKAMIVAMSRRIAVELYEAIVKLRPEWHSDDVLKG  598
             +R+ ++AKDI++HFE RQ +M    GK+MIV+MSRRIAV+LY+ I++L+PEWHSDD  KG
Sbjct  539   PRVEALAKDIIQHFETRQQAMK---GKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKG  595

Query  599   KIKVVMTGSSSDPESWQKHIGTKQTRETLSERMKDNNDELELVIVRDMWLTGFDVPSMHT  658
              IKVVMTGSSSDP S Q+HIG K+ R  L  RMKD NDEL+LVIVRDMWLTGFDVPSMHT
Sbjct  596   VIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHT  655

Query  659   MYVDKPMQGHNLMQAIARVNRVFKEKQGGLVVDYIGIADRLKKALMQYTDNDREQVGVDT  718
             MY+DKPM+GHNLMQAIARVNRVFK+K GGL+VDY+GIA+ LK AL +YT++D+ Q ++DT
Sbjct  656   MYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDT  715

Query  719   ALAVSVMLEKLDIVRDILHQHDYSKYFGDRYSEKLQVIMETIDFVIGLREERKNDFLKFV  778
               AV +ML K D+++D+L + DYSK+ +++ SE+   I +T+D+VIGL E+ ++ F+K V
Sbjct  716   DKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTV  775

Query  779   SELSKAYSLCSTTEEAEKHNVEIGFFKSVRAGIIKL---STDTSKKKSVDQLDSELNQLI  835
             +EL+KA++LC+T   A+  N EI+FFK+V+AG++KL   + +   +K+  ++++E+NQL+
Sbjct  776   TELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLV  835

Query  836   SKSLKSDKVIDIMAEIGLSKPDISILSDEFLEEFNKMNHKNVAIELLKRLIKGKLKMIAR  895
             S+S+ ++ VID+   +GL +PD+SILSD+FL + + +++KNVA+ELL+RL+KG++K + +
Sbjct  836   SQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMK  895

Query  896   KTIVQSRQFSELLEDALAKYQARLIDSTVVIQELIELAKDITKAAESGKESGLTEDEFAF  955
                  S++FSE+L +++ KY++R I+++ VI+ELI+LAKDI +  + G+E GL  DE+AF
Sbjct  896   TNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAF  955

Query  956   YEALSSNMTAKEVMGTDILKEIAKELTKKIKSSTTIDWNIRDSVRAKIRFEIKVLL  1011
             Y+AL S+ TAK  M    L+ IA ELTK +K + ++DW+ RDS +AK+R  ++ LL
Sbjct  956   YDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLL  1011

17) Acid345_3755 in NC_008009


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  905 bits (3428),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 491/1041 (48%), Positives = 781/1041 (76%), Gaps = 30/1041 (2%)

Query  7     FTESVVEEAALAWLEGLGYTVLSGPSISAGEIAAERIEADYSDVILERRVRQTLQRLNPN  66
             F E  +E+  L WLE+L+Y    G  IS   +A+ER      DV+L+ R+ ++L+++N++
Sbjct  5     FNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSD--KDVVLHERLEKALRKINSD  62

Query  67    LPPEALDDAFRRLTHDNETSLIANNHAFHQILVNGVTVEYNRADGSIGGALVRVIDFEAA  126
             + P  ++ A++ LT ++  +L+ NN +FH+ L+NG+ +E    +G     +V+++DFE +
Sbjct  63    IHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHP  122

Query  127   ENNDWLAVNQFTIVEGQYTRRPDVLIFINGLPIALLELKNAADENATIWTAFKQIQTYKS  186
             +NND LAVNQFT+V+G+YT+RPD+++FINGLPI ++ELKN+++E   +  ++ Q++TYK 
Sbjct  123   QNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKM  182

Query  187   QIPSLFAYNELLVISDGMEARVGSLTADTERFMPWRTIGGEELAPTSLPQLQVLIEGLFE  246
             +IP LF++NE+LV SDG++++ GSLTA+ +RFM WR+ +GE  +++SL+ L+VLI+G+++
Sbjct  183   RIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLN  242

Query  247   RRRLLDFIRHFVVFEDEGRGVLIKKIAGYHQFHAVNRALRETLSASAEGGDRRVGVVWHT  306
              + LLD+IR FV+F+D+G+G + K +A+YHQ+ AVN+A+  +L AS+  GD + GV+WHT
Sbjct  243   PKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHT  302

Query  307   QGSGKSLTMAFYAGRLVLEPTLQNPTIVVITDRNDLDDQLYGTFSRC-----HELLRQAP  361
             QGSGKSLTM F++G+L+    L+NPT+V++TDRNDLD+QLY+TF +        LLRQ+P
Sbjct  303   QGSGKSLTMVFFSGKLI--QMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  362   LQALDREHLRSLVQVSSGGVIFTTIQKFMPAEGDKY-PQLTDRRNVIVVADEAHRSQYDF  420
              QA  R +L+SL+ V SGG++FTT+QKF P + +   + LT+R+NVIV+ADEAHR+QY+F
Sbjct  361   KQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGF  420

Query  421   ID-----------GFARHMRDALPHASFIGFTGTPIEKTDVNTRSVFGDYISIYDIQRAV  469
                          G+A+ +RDALP+A+F+GFTGTP+  TD NT+ VFG+YI +YD+ +AV
Sbjct  421   NAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV  480

Query  470   EDGATVPIYYESRLAKLELPASEKPKVDTAFEEATEGEEVDRKEKLRTKWAAVEAVVGTE  529
              DG+TV IYYESR+  L+LP S    +D A+++ TE++E D K++L++KW+ +EA+ G+ 
Sbjct  481   ADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAK  538

Query  530   KRLNTVAKDLVKHFEERLEVMDGKAMIVCMSRRICVDLYNEIMKLRPTWHSENDDAGVLK  589
              R++++AKD+++HFE R + M GK+MIV MSRRI VDLY+EI++L+P WHS++DD GV+K
Sbjct  539   PRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIK  598

Query  590   IVMTGSATDGPEWQQHIRDKRRREALGKRFKNAKDPFKIVIVRDMWLTGFDVPSLHTMYA  649
             +VMTGS++D    Q+HI  K+RR  L KR K+ +D +++VIVRDMWLTGFDVPS+HTMY 
Sbjct  599   VVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYI  658

Query  650   DKPMRAHGLMQAIARVNRVFKDKPGGLVVDYLGIAHELKLALATYTESGGKGQTALPQEE  709
             DKPM++H LMQAIARVNRVFKDKPGGL+VDY+GIA+ LK AL  YTES +++QTA+  + 
Sbjct  659   DKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDK  717

Query  710   AVARMIEKYEICRGLFHGFDWSMWLTGTSAQKLAILPNAQEHVLK-QEDGKNRLLKAVSD  768
             AV  M+ KY++ ++++  +D S   +   +++   ++N+ + V+   ED ++R++K+V++
Sbjct  718   AVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTE  777

Query  769   LSKAFALAVPHDAALKIRDDVGFFQAIRSVLAK-----TASQQYRPEQELDNAIRQIISR  823
             L+KAFAL   + +A  + D+++FF+A+++ L K       ++  +   E++  I Q++S+
Sbjct  778   LGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQ  837

Query  824   AMSSGEVVDIFAAAGLKKPDISILSEEFLREVSNIPQKNLAVELLRKLLNDEIKSRSRRN  883
             ++ + +V+D++ + GL +PD+SILS++FL++V  + QKN+AVELL +LL++++KS  + N
Sbjct  838   SVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTN  897

Query  884   VVKGKLFSAMLESSIHKYQNRAIQAAQVIEELIGLAKEMREESAKGEELGLSEDEVAFYD  943
                +K FS ML +SI+KY++R+I++++VIEELI LAK++++E  +G+ELGL+ DE+AFYD
Sbjct  898   ATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYD  957

Query  944   ALEVNDSAVKVLGEPTLKTIARELVDTVRRNTTIDWAVRENIRANLRVLVKRILRKYGYP  1003
             AL  +++A K + +  L++IA+EL  TV+ N ++DW+ R++ +A++RV V+R+L+KYGYP
Sbjct  958   ALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYP  1017

Query  1004  PDKQEKATLTVLEQAEALSAN  1024
             PD Q  A   V+EQAE +++N
Sbjct  1018  PDLQKMAVEQVVEQAELMASN  1038

18) hsdR in NC_015634


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  902 bits (3417),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 554/1051 (53%), Positives = 796/1051 (76%), Gaps = 46/1051 (4%)

Query  35    GYDYVFGPDISCDGERPERKDYRTVILEDRVKDALFKHNRHLPQEAIEEAFRQIIAFNSP  94
             +YDY  G +IS  G  PERK  + V+L++R+  AL K N ++    IE A++++   +SP
Sbjct  22    SYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHPRFIEKAIHELTLEKSP  81

Query  95    SLEENNRHFHKLITEGIDV-SFHQDGLSRSMKAFLIDFEEPAKNDFLVVNQFTVVEKE-E  152
             +L ENN  FH  + +GI++  ++++G S      ++DFE+P +NDFL VNQFTVV+ +  
Sbjct  82    NLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNNDFLAVNQFTVVNGDYT  141

Query  153   RRPDLIIFINGIPFVVIELKSASDENVSIDNAYAQIQTYKRDIPSLFYYNAFCILSDGIN  212
             +RPD+++FING+P+VVIELK++++E V+++++Y Q++TYK  IP LF +N   + SDGIN
Sbjct  142   KRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTSDGIN  201

Query  213   AKAGTITASQERFMNWRTVDGENIEPLEVPQYEVLLRGMLAKDRLIDIIENFILFQESKE  272
             +KAG++TA+ +RFM WR+ DGE   +  ++  +VL+ GML    L+D+I  F+LFQ+   
Sbjct  202   TKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPKTLLDLIRYFVLFQD---  258

Query  273   EERDENGKKIGERKTIAKILAAYHQYFAVKKAVEKTKIATSENGDRKIGVIWHTQGSGKS  332
                       + +  I+KILAAYHQY+AV+KAV+++ +A+S +GD K GVIWHTQGSGKS
Sbjct  259   ----------DGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQGSGKS  308

Query  333   FSMVFYTAQLVKQLNNPTIVVITDRNDLDDQLFSTFSKSKD-----ILRQTPKQADVRKL  387
             ++MVF++++L++ LNNPT+V++TDRNDLD+QL+STF KSK+     +LRQTPKQA+ RK 
Sbjct  309   LTMVFFSGKLIQMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRK-  367

Query  388   SEEQKKQQANEKSKEINGLYDLLNDRESGGIIFTTIQKFKPEEGE--MPVLTDRKNVIVI  445
                           E+++L  +    ESGGI+FTT+QKF PE+ E  M+ LT+RKNVIV+
Sbjct  368   --------------ELKSLLSV----ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVM  409

Query  446   ADEAHRSQYGFSAKTDTKTGEVKYGYAKYLRDALPNASFIGFTGTPIELEDKSTPAVFGN  505
             ADEAHR+QYGF+AK D K   +KYGYAKYLRDALPNA+F+GFTGTP+   DK+T  VFGN
Sbjct  410   ADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGN  469

Query  506   YIDIYDMTRAVEDKATVKIYYENRIIRLEANEEELAKIDeefeeitedqeeSVREKYKSK  565
             YID+YDMT+AV D +TVKIYYE+R+I L+  +     +DE +++ITEDQEE V+++ KSK
Sbjct  470   YIDVYDMTQAVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITEDQEEDVKQRLKSK  527

Query  566   WSRLEAIVGSPNRIKQLAKDIVNHYEEKAKAIDGKAMIVCMSRRICVALYNEIVKLRPDW  625
             WSR+EA+ G+  R+  LAKDI++H+E + +A+ GK+MIV MSRRI V LY+EI++L+P+W
Sbjct  528   WSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEW  587

Query  626   HSDDDDKGKIKVVMTGSAGDDDFLQPHIGGKKRRDLLAKRMKDNSDELKIVIVRDMWLTG  685
             HSDDDDKG IKVVMTGS++D   +Q HIG KKRR +L KRMKD +DEL++VIVRDMWLTG
Sbjct  588   HSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTG  647

Query  686   FDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKSGGVVVDYIGILESLKKALNQYTESD  745
             FDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDK+GG++VDY+GI ESLK AL++YTESD
Sbjct  648   FDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESD  707

Query  746   KKTTGIDTSAAVAVMKEKLEILQDMMHGFDYSAYMGSSQAGRIRAITGGMNVIFGKSEKE  805
             +  T+IDT  AV +M  K +++QDM+  +DYS + +  ++ R  +I+  M+ ++G +E E
Sbjct  708   QAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDE  767

Query  806   QKEFKKTATELAKAHSLCAATDEGKAAALEVSYFKAVKASLNKLQE--KQPK-RKTKKEI  862
             ++ F KT TEL+KA +LCA+   ++    E+++FKAVKA+L KL +  K+ K RKT  E+
Sbjct  768   RQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEV  827

Query  863   EARVNQLLERSIISEEVVDVFEVMGLKHPDVSILSEEFLEEVRSYEYKNLAVEMLKKLLE  922
             EA +NQL+ +S+++E+V+DV++ +GL +PD+SILS++FL +V +   KN+AVE+L++LL 
Sbjct  828   EAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLK  887

Query  923   GNIKTMERRNLVKSQKYSEKLKQSLNKYKNQAITNAEVIEELIQMAkdmkkereeekdLG  982
             G++K++ + N   S+++SE L +S+NKY++++I  + VIEELIQ+AKD+K+E++  ++LG
Sbjct  888   GQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELG  947

Query  983   LNEDEIAFYDALTSESIVKELMEDEVLRKIANELTQAIRRNMTIDWHVRKSARAGMRRII  1042
             LN DEIAFYDAL S+   K  MED  LR IA+ELT++++ NM++DW  R SA+A MR  +
Sbjct  948   LNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAV  1007

Query  1043  KRLLKKYDYPPEQAKKALDTVMRQAELMAEH  1073
             +RLLKKY+YPP+  K A++ V+ QAELMA +
Sbjct  1008  RRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

19) Cylst_5220 in NC_019757


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  893 bits (3382),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 530/1047 (51%), Positives = 790/1047 (76%), Gaps = 23/1047 (2%)

Query  1     MSATFTESTVEQATLDWLEELGYTPLNGAEIAPDIPHSERQEYNDVVLINRLQTALEIIN  60
             M+  F E  +EQ  L+WLE L+Y   +G EI+     +ER+  +DVVL +RL+ AL  IN
Sbjct  1     MNFQFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKIN  60

Query  61    PQIPFDAIQDTIKKITRTETPVLEENNRRFHQYLTEGVDVE-YQQHGQTQYKKLWLIDFD  119
             ++I    I+ +I  +T   +P L ENN  FH+ L +G+++E Y+++GQ+    + ++DF+
Sbjct  61    SDIHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFE  120

Query  120   EIDNNDWLAVNQFTVIENKNNRRPDVIIFINGLPIAVIELKNAVKEYATIKGAFNQLQTY  179
             + +NND LAVNQFTV++    +RPD+++FINGLPI VIELKN+ +E   + ++++QL+TY
Sbjct  121   HPQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  180   KKDIPCLFSYNEILVISDVVNARVGTLTADWERFMPWRSVDGENIFPKGQSELETIIKGI  239
             K  IP LF++NE+LV SD +N++ G+LTA+ +RFM WRS DGE   + + + L+ +I+G+
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGM  240

Query  240   FNKTTILDILQYFIVFEVDQDTIIKKI-AGYHQYHAVNKAITATIKATRLNGDQKVGVVW  298
             +N  T+LD+++YF++F+ D    I KI A+YHQY AVNKA+  ++ A+  +GD K GV+W
Sbjct  241   LNPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIW  300

Query  299   HTQGSGKSLTMAFYAGKLIQEPDMRNPTLVILTDRNDLDDQLFNTFSSCAD-----LLRQ  353
             HTQGSGKSLTM F++GKLIQ   + NPTLVI+TDRNDLD+QL++TF    +     LLRQ
Sbjct  301   HTQGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQ  358

Query  354   TPVQAENRESLTALLQVAAGGIVFTTIQKFAPETGNEY-PELSPRRNIVLIADEAHRSQY  412
             TP QAE R  L +LL V +GGIVFTT+QKF PE  +   + L+ R+N++++ADEAHR+QY
Sbjct  359   TPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQY  418

Query  413   GLKAKVVQKDDAAYIKYGYAKYLRDAIPNASFVGFTGTPISQTDKNTAALFGNYIDIYDI  472
             G++AK  +K+++  IKYGYAKYLRDA+PNA+FVGFTGTP++ TDKNT  +FGNYID+YD+
Sbjct  419   GFNAKYDDKGEG--IKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDM  476

Query  473   QRAVEDEATVKIYYEGRLAKLDLEPSERPKIDPefeeitedeeltskeKLKSRWARLEAL  532
              +AV D +TVKIYYE+R+  L+L  ++   +D  +++ITED+E   K++LKS+W+R+EAL
Sbjct  477   TQAVADGSTVKIYYESRVIPLNL--PQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEAL  534

Query  533   VGAEKRIAQIAKDIVAHFENRTAAPELRDGKGMIVCMSRRICADLYNAITQLKPEWHSED  592
              GA  R+  +AKDI+ HFE R  A     GKGMIV MSRRI  DLY+ I +LKPEWHS+D
Sbjct  535   AGAKPRVEALAKDIIQHFETRQQA---MKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDD  591

Query  593   DSQGFLKVVMTGSAADEEKMQPHIRNKKRRKDLAKRFKKADDPFKLVIVRDMWLTGFDAP  652
             D +G +KVVMTGS++D    Q HI  KKRR  L KR K  +D ++LVIVRDMWLTGFD P
Sbjct  592   DDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVP  651

Query  653   SLHSLYVDKPMQGHNLMQAIARVNRVFKDKPGGLVVDYLGIAEQLKEALKDYTESDRGET  712
             S+H++Y+DKPM+GHNLMQAIARVNRVFKDKPGGL+VDY+GIAE LKEALK+YTESD+++T
Sbjct  652   SMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQT  711

Query  713   GIPTELALAVLQEKYEVVQGMYHGFNYQKFFTGKPTERVSMIPAALNHILGL-EDGKQRY  771
             +I T+ A+ ++  KY+V+Q+M   ++Y KF + K +ER   I+ +++ ++GL ED +QR+
Sbjct  712   AIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRF  771

Query  772   IKAVTELSQAFALVSSTDEAIAIRDEVGFFQAIKAAMVK--HTTING---KSPEDVDAAV  826
             IK+VTEL++AFAL ++   A  + DE++FF+A+KA++VK  +   +G   K+P +V+A +
Sbjct  772   IKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEI  831

Query  827   RQIVSKAIASDQVIDIFASAGLNKPNIAVLSDEFLEEVRGLPYRNVALEALQKLINDQIK  886
              Q+VS+++ +++VID++ + GL++P++++LSD+FL +V GL  +NVA+E L++L+++Q+K
Sbjct  832   NQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVK  891

Query  887   VSSRKNLIQSRSFREMLENTIKRYQNRAIETAQVINEFIELVKAMREAQKRGENLGLTED  946
                + N   S+ F EML N+I++Y++R+IET++VI+E+I+L K +++ Q+RG++LGL  D
Sbjct  892   SLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSD  951

Query  947   ETAFYDALEVNDSAVISLGDNTLKAIARDLVKAIRSNLTIDWTVKENvraklrvtvkrll  1006
             E AFYDAL  +++A  ++ D+ L+AIA++L K+++ N+++DW+ +++ +AK+RV+V+RLL
Sbjct  952   EIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLL  1011

Query  1007  kkYGYPPDKQEKATATVLEQAELLCKD  1033
             KKYGYPPD Q  A   V+EQAEL+  +
Sbjct  1012  KKYGYPPDLQKMAVEQVVEQAELMASN  1038

20) F7308_0305 in NC_015696


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  892 bits (3379),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 523/1046 (50%), Positives = 778/1046 (75%), Gaps = 32/1046 (3%)

Query  2     KEDNIENYAIDLFKSEGYNYIYAPDVAPDTDNPIRATFSDVVLENLLRDKLLEINPQIQP  61
             +ED++E+  ++ + S +Y+Y  + +++     P R +  DVVL++ L   L  IN++I+P
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62    NLIDDAIKKLLRTSSDELLADNELIHQYITQGIKVE-YTKDGATRGEIVKLIDFDNSSNN  120
              +I+ AI  L    S +LL +N  +H+ + +GI +E Y  +G +  EIVK++DF+++ NN
Sbjct  66    RFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNN  125

Query  121   DFTVMNQFTIIENDNNKRPDLIIFVNGLPLVVIELKNATDENATIKSAFDQIRTYKATIP  180
             DF  +NQFT+++ D  KRPD+++F+NGLP+VVIELKN+T+E   +  +++Q+ TYK  IP
Sbjct  126   DFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  181   SLFRYNAICVISDGLEAKAGTISADISRFMTWKSSDGIAESSKLVPQLETLILGMLNPIT  240
              LF +N + V SDG+++KAG+++A+  RFMTW+S DG +ESS  ++ L+ LI GMLNP T
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPKT  245

Query  241   LLDLIKNFIVFEKDKKQDEKGQTQVFTIKKLAAYHQYYAVNKALERTLQASHKDGDKKGG  300
             LLDLI+ F++F+    +D KG+      K LAAYHQYYAVNKA++R+L AS  +GD KGG
Sbjct  246   LLDLIRYFVLFQ----DDGKGHIS----KILAAYHQYYAVNKAVDRALLASSGQGDGKGG  297

Query  301   VVWHTQGSGKSLSMVFYTGKAVLALNNPTIVVITDRNDLDDQLFDTFA-----ASKSLLR  355
             V+WHTQGSGKSL+MVF++GK +  LNNPT+V++TDRNDLD+QL+ TF      ++K+LLR
Sbjct  298   VIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLR  357

Query  356   QTPVQANTREDLKRLLKVESGGIVFTTIQKFQPEEGN-VYDTLSARDNIIVVADEAHRTQ  414
             QTP QA+TR +LK LL VESGGIVFTT+QKF+PE+ + +  +L+ R N+IV+ADEAHRTQ
Sbjct  358   QTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQ  417

Query  415   YGFSAKTVDDKDEQGNIIGKKTVYGFAKYLRDALPNATYLGFTGTPVEANDKNTPMVFGD  474
             YGF+AK     D++G+ I     YG+AKYLRDALPNAT++GFTGTPV + DKNT MVFG+
Sbjct  418   YGFNAKY----DDKGEGIK----YGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGN  469

Query  475   YVDIYDISQAIDDGATVPIYYESRLAKINLSEEGKELVKELDDEIGELDES--QKTKAKW  532
             Y+D+YD++QA+ DG+TV IYYESR+  +NL++ + +L    +D   + +E   Q+ K+KW
Sbjct  470   YIDVYDMTQAVADGSTVKIYYESRVIPLNLPQ-SLDLDEAYNDITEDQEEDVKQRLKSKW  528

Query  533   TRLEALIGAENRIKEVANDIVNHFEARQEVCDGKAMIVAMSRRIAVRLYDEIIKLRPAWH  592
             +R+EAL GA  R+  +A+DI++HFE+RQ+   GK+MIV+MSRRIAV LYDEII+L+P WH
Sbjct  529   SRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWH  588

Query  593   DKDLDKGVIKVVMTASSSDGPEMEQHHTSKQQRRNLANRMKDTKDELKLVIVRDMWLTGF  652
               D DKGVIKVVMT+SSSD    ++H  +K++R  L +RMKD +DEL+LVIVRDMWLTGF
Sbjct  589   SDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGF  648

Query  653   DAPSMHTLYIDKPMQGHNLMQAIARVNRVYKDKPAGLVVDYLGIASDLKKALSFYSDSGG  712
             D PSMHT+YIDKPM+GHNLMQAIARVNRV+KDKP+GL+VDY+GIA  LK AL  Y++S +
Sbjct  649   DVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-D  707

Query  713   KGDPAQTQEKAVSLMLEKLEVVSQMFHGFDYEKYFDADTRQKLAIILEAEDFILGL-ENG  771
             +++ A   +KAV LML K +V+ +M+  +DY K+      ++   I ++ D+++GL E+ 
Sbjct  708   QAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDE  767

Query  772   KKRFVNEVTALSKAFAIAMPHDEAVDAKDEIAFFQAIKARLAKF----DSTGTGKTDEQI  827
             ++RF++ VT L+KAFA+   +  A + +DEIAFF+A+KA L K+        T KT  ++
Sbjct  768   RQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEV  827

Query  828   ETAIRQVIDKALVTDQVIDIFDASGIKKPDISVLSDEFLAEVRDYKHKNIALETLKKLLN  887
             E+ I Q++ +++VT++VID++++ G+ +PD+S+LSD+FL +V + K+KN+A+E L++LL+
Sbjct  828   EAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLK  887

Query  888   QEIKARSKTNLVQAKTLKEMLEDSIRRYHSKAISSVEFLDELINQAKEIKNMDTEYQKLG  947
              ++K+  KTN   +K + EML +SI +Y+S++I +   ++ELI+ AK+IK+ +   + LG
Sbjct  888   GQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELG  947

Query  948   LTEYEYAFYTAVANNESAKEIMQTDKLRELAIELFNRLKSSASIDWTKKESVRAKLRVTV  1007
             L   E AFY A+ ++E+AK  M+  KLR +A EL + +K + S+DW+K++S +AK+RV+V
Sbjct  948   LNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAV  1007

Query  1008  KRTLRQFGYPPDMQKIATDTVLKQAE  1033
             +R L+++GYPPD+QK+A + V+ QAE
Sbjct  1008  RRLLKKYGYPPDLQKMAVEQVVEQAE  1033

21) hsdR in NC_015697


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  882 bits (3339),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 520/1046 (50%), Positives = 776/1046 (75%), Gaps = 28/1046 (2%)

Query  8     ESDVENLALDTLQKVGYDVYKSPSTTSPNPEIDKMRNNDHAVAVLTEKLQASLKKLNPGY  67
             E D+E++ L+ L+ ++YD YK  +  S    +   R++D  V VL E+L+ +L+K+N++ 
Sbjct  7     EDDLEQVVLEWLESLSYD-YKKGNEIS-MTGLAPERKSDKDV-VLHERLEKALRKINSDI  63

Query  68    PEEIYKEALRQLTRLADNPDMMVNNHYFHKLLIEGIRVKT-TVNGENRTEVLYPIDFDHV  126
                +   A+++LT L  +P+++ NN  FH  LI+GI +     +G++  E++  +DF+H 
Sbjct  64    HPRFIEKAIHELT-LEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHP  122

Query  127   GNNQFVATNQFTF-KGSHERRPDTTIFINGLPVVTFEFKDASNPNVSIENAYRQLQTYKA  185
              NN+F+A NQFT  +G   +RPD  +FINGLP+V +E+K+++N  V++E++Y+QL+TYK 
Sbjct  123   QNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKM  182

Query  186   EIPEYLKYNEILIASDGINSRAGSLTAGFDRFMRWRAPK-NINVGDDLE-LETMIKYMLT  243
              IP+ + +NE+L++SDGIN++AGSLTA +DRFM WR+   + + +  L  L+ +I+ ML 
Sbjct  183   RIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLN  242

Query  244   PKDLLNLIENFIIFETDGDNTI-KILAAYHQYYMVNKAVKAAKRTMADPNDKRIGVVWHT  302
             PK LL+LI  F++F+ DG   I KILAAYHQYY VNKAV  A  + ++  D + GV+WHT
Sbjct  243   PKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHT  302

Query  303   TGSGKSLSMVFFASIVARKLNNPTMLVINDRNDLDDQLFDTFA-----AAHEFLRQAPEH  357
              GSGKSL+MVFF++ + + LNNPT++++ DRNDLD+QL+ TF      ++  +LRQ+P +
Sbjct  303   QGSGKSLTMVFFSGKLIQMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQ  362

Query  358   AESRDELRKFMDKQAGEIIFSTIQKFSPDFESGETEMPVLTNRSDVIVIADEAHRTQYGL  417
             AE+R EL+ ++  ++G I+F+T+QKF P  E  ET M+ LT+R +VIV+ADEAHRTQYG+
Sbjct  363   AETRKELKSLLSVESGGIVFTTMQKFEP--EQNETIMAALTERKNVIVMADEAHRTQYGF  420

Query  418   KAKFTN--NGLRYGFAKYLRDALPNASFIGFTGTPISTADKSTVAVFGNYIDVYDITQAV  475
             +AK+ +  +G++YG+AKYLRDALPNA+F+GFTGTP++++DK+T  VFGNYIDVYD+TQAV
Sbjct  421   NAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV  480

Query  476   NDHATVKIYYESHVFPLKLKS--DAQAKYQQLLKEANLDDDPNLEENTRRNREFSSLEAL  533
              D +TVKIYYES+V+PL+L    D +  Y+      ++ +D + + + R +   S +EAL
Sbjct  481   ADGSTVKIYYESRVIPLNLPQSLDLDEAYN------DITEDQEEDVKQRLKSKWSRIEAL  534

Query  534   AGAQPRLESIAKHFVNHFEARQKETFGKAMIVEMSRRNAVRLYNQIIKLRPEWDSDDLNK  593
             AGA+PR+E++AK++++HFE+RQ+   GK+MIV MSRR AV LY++II+L+PEW+SDD +K
Sbjct  535   AGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDK  594

Query  594   GKIKVVMTSSAADGPEMAKFQTSKADRRVLQKRMKDNNDELQIVIVVDMWLTGFDVPSMN  653
             G IKVVMT+S++D     +   +K  R VL+KRMKD NDELQ+VIV DMWLTGFDVPSM+
Sbjct  595   GVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMH  654

Query  654   TMYIDKPMKGHNLIQAIARVNRVFKDKDSALIVDYIGIAENLKEALNVYSTEDQGQVGIN  713
             TMYIDKPMKGHNL+QAIARVNRVFKDK ++LIVDY+GIAE+LKEAL+ Y+  DQ+Q +I+
Sbjct  655   TMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAID  714

Query  714   MQKALALLKEKYDIITNDFLYGVDYSGFDSEDGAVRLKITRRVANEILGEDEETQQKFLD  773
              +KA+ L+  KYD+I +D LY +DYS F+SE  + R        + ++G +E+ +Q+F+ 
Sbjct  715   TDKAVELMLLKYDVI-QDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIK  773

Query  774   VVTELQKAYALTSTQPEAQAYGKEIAFFKTVKVFIQKLKQPTTPVGSGK-HTDVKYQMQQ  832
              VTEL KA+AL +T+P AQ    EIAFFK+VK  + KL QP     + K  ++V  +++Q
Sbjct  774   TVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQ  833

Query  833   LLDQSIISEPNVDIYNELGIKRQSIDLISDEFLQKVNSMPEQDVAITLLEKLLKGKIKAM  892
             L+ QS+++E  +D+Y+ LG+ +  + ++SD+FL+ V+++ +++VA+ LL++LLKG++K++
Sbjct  834   LVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSL  893

Query  893   MKSNKVTSEKFEDMLQKSIDEYNQRGITSEIVIRKLIDMAKKINAEQEKGKDLGLSQEEI  952
             MK+N   S +F +ML +SI+ YN R+I +  VI  LI++AK I+ EQ++G++LGL+ +EI
Sbjct  894   MKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEI  953

Query  953   AFYDALADHKKAVEVLGEKKLHLIAQELVKLVKEEAGVDWEKRRNIQAKMRVAVKHLLRK  1012
             AFYDAL  H  A   + +KKL+ IA+EL K VKE+ +VDW KR + +AKMRVAV++LL+K
Sbjct  954   AFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKK  1013

Query  1013  YGYPPDIAPEAVNTVVEQAELMATND  1038
             YGYPPD+   AV+ VVEQAELMA+N+
Sbjct  1014  YGYPPDLQKMAVEQVVEQAELMASNQ  1039

22) BTH_I2740 in NC_007651


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  882 bits (3339),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 491/1055 (47%), Positives = 763/1055 (73%), Gaps = 34/1055 (3%)

Query  1     MAF-LSEAAVEQALLDQLRALDYSIEREEDIGPDGHRPERESHDGVVLKKRFEDAVARLN  59
             M F ++E  +EQ +L+ L +L Y   + ++I+  G  PER S+ +VVL  R+E A+ ++N
Sbjct  1     MNFQFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKIN  60

Query  60    PGLPLEARQDAARRVMQSELPSLLEENRRIHKLMIEGVDVEYYADDGTLTAGKVALINFE  119
             +++     + A + +     P+LLE+N  +H  +I+G+++E Y D+G      V +++FE
Sbjct  61    SDIHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFE  120

Query  120   QPEQNDWLAVSQFVVVAGHYNRRPDVVVFVNGLPLGVVELKAPGSGNATLVGAFNQLQTY  179
             +P++ND LAV+QF VV G+Y +RPD+V+F+NGLP+ V+ELK + +    + ++++QL+TY
Sbjct  121   HPQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  180   KKQIPALFNTNALLVTSDGITARVGSLSADLERFMPWRTTDGTDVAPKGAPELSTLIEGV  239
             K +IP LF  N +LVTSDGI ++ GSL+A+ +RFM WR+ DG   ++ + + L  LI+G+
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGM  240

Query  240   FEHRRLLDLLCHFTAFGETGSG-LAKVIAGYHQFHAVRHAVNSTVAASSPEGNKRVGVIW  298
             ++ + LLDL+  F  F + G G ++K++A+YHQ+ AV  AV+ ++ ASS +G+ + GVIW
Sbjct  241   LNPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIW  300

Query  299   HTQGSGKSLLMAFYAGQLVKHPAMANPTLVVLTDRNDLDDQLFSTFSMCRD-----LIRQ  353
             HTQGSGKSL M F++G+L+    + NPTLV++TDRNDLD+QL+STF   ++     L+RQ
Sbjct  301   HTQGSGKSLTMVFFSGKLI--QMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQ  358

Query  354   TPVQAESREDLQKVLSRASGGVIFTTLQKFG-----ELAEPLTTRRNVVVIADEAHRSQY  408
             TP QAE+R +L+ +LS  SGG++FTT+QKF       +  +LT R+NV+V+ADEAHR+QY
Sbjct  359   TPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQY  418

Query  409   GFKAKVDTKTGEISYGFAKYMRDALPNASFIGFTGTPIEADDVNTPAVFGNYIDVYDISR  468
             GF+AK D K   I YG+AKY+RDALPNA+F+GFTGTP+ + D NT  VFGNYIDVYD+++
Sbjct  419   GFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQ  478

Query  469   AVEDGATVPIYYESRLARIELDEDEKPKIDAEVEDLTEEDSEADQERFKKKWSTVETLVG  528
             AV DG+TV IYYESR+  ++L +     +D   +D+TE++ E  ++R+K KWS +E+L G
Sbjct  479   AVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAG  536

Query  529   SDKRLALVAKDMVAHFDDRVAALDGKAMVVCMSRRICVKLYDEIVKLRPDWHSADDNAGA  588
             +  R+  +AKD++ HF+ R  A+ GK+M+V MSRRI V LYDEI++L+P+WHS DD+ G 
Sbjct  537   AKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGV  596

Query  589   IKIVMTGAASDPQEWQQHIGNKARRDQLAKRARDPKDPLKLVIVRDMWLTGFDAPCMHTM  648
             IK+VMTG++SDP   Q+HIG K RR  L KR +D +D L+LVIVRDMWLTGFD P MHTM
Sbjct  597   IKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTM  656

Query  649   YVDKPMHGHGLMQAIARVNRVFRDKPAGLIVDYIGIAQNLKSALQQYSKNDQDNTGVDEA  708
             Y+DKPM GH LMQAIARVNRVF+DKP+GLIVDY+GIA++LK AL++Y+ +DQ +T++D  
Sbjct  657   YIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTD  716

Query  709   QAIAVMMEKYEVVRDMYHGFDYASALTGTPQERLAMMAGAIEWLLDLQQRLAAKEKTEGG  768
             +A+ +M+ KY+V++DM   +DY+   +    ER   ++ +++ +++L +           
Sbjct  717   KAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGE-----------  765

Query  769   KKNAHRRYQDAVlalskayslasasDEAREIREEVGFFQAIRAALVK-----SATGSGVT  823
               + ++R+  +V  L+KA++L ++   A+E+ +E++FF+A++A+LVK         +  T
Sbjct  766   --DERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKT  823

Query  824   EQERELAIQQIVSRAVVSTEIVDILAAAGIKSPDISILSDEFLAEVQRMERKNLALEALR  883
               E E  I+Q+VS++VV+ +++D+  + G+  PD+SILSD+FL +V+ + +KN+A+E L 
Sbjct  824   PAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLN  883

Query  884   KLINDGIRSRSKANVVQTRAFSERLEDAVARYHANAITTAEVLQELIKLAKDIRAARKRG  943
             +L+++ ++S  K+N   ++ FSE L +++ +Y++ +I T+ V++ELI+LAKDI+  ++RG
Sbjct  884   RLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRG  943

Query  944   EESGLSDEEIAFYDALAENDSAVQMMGDDKLRLIAHELLVSLRENVSVDWAHRESARARM  1003
             +E GL+ +EIAFYDAL  +++A + M D KLR IAHEL  +++EN+SVDW+ R+SA+A+M
Sbjct  944   NELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKM  1003

Query  1004  RVLVKRILRKYGYPPDLQYSAVQTVLQQAEALSSG  1038
             RV V+R+L+KYGYPPDLQ  AV+ V++QAE ++S 
Sbjct  1004  RVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

23) Calni_0580 in NC_014758


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  881 bits (3336),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 507/1064 (48%), Positives = 774/1064 (73%), Gaps = 44/1064 (4%)

Query  19    SETEIENFAINLLKSQGYDYLFGGDIAPDGENPLRKSFEDVILFDRLKAALERINTNLPQ  78
             +E ++E+  ++ L S +YDY  G +I+  G  P RKS  DV+L +RL  AL +IN+++  
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  79    NAINDAIKQLTQIHTPDLIANNEIFHRMLTEGVKVL-YQKDGIERGDIVWLIDFKNPENN  137
               I+ AI +LT   +P+L+ NN  FH  L +G+ +  Y+ +G    +IV ++DF +P+NN
Sbjct  66    RFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNN  125

Query  138   DFLVVNQFTVIENRKNKRPDIVIFINGLPLLVIELKNPADENATIKSAYNQIQTYKQTIA  197
             DFL VNQFTV++    KRPDIV+FINGLP++VIELKN+++E   +  +Y+Q++TYK  I+
Sbjct  126   DFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  198   SLFTYNEILVISDGLKAKMGSLSAGYDRFMYWKTDDGTKEDSHLVSQLETMIKGLLNKET  257
              LFT+NE+LV SDG+++K GSL+A YDRFM W++ DG  E S  ++ L+ +I+G+LN  T
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPKT  245

Query  258   LIDYIRFFILFektkkedekeQTIIQMTKKIAGYHQYYAVNKAVESTIRAIGRNTSIVRE  317
             L+D IR+F+LF+         +   +++K +A+YHQYYAVNKAV+ ++            
Sbjct  246   LLDLIRYFVLFQD--------DGKGHISKILAAYHQYYAVNKAVDRAL------------  285

Query  318   DPATYGLPDVKTQPEGDKKAGVVWHTQGSGKSLSMLFYTGKIIQTINNPTIVVITDRNDL  377
                      + +  +GD K+GV+WHTQGSGKSL+M+F++GK+IQ +NNPT+V++TDRNDL
Sbjct  286   ---------LASSGQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVIVTDRNDL  336

Query  378   DDQLFDTFA-----SATQILRQEPVQATSREHLKELLKIDSGGVVFTTIHKFWPE-NGNI  431
             D+QL+ TF      S+  +LRQ P QA +R +LK LL ++SGG+VFTT++KF PE N  I
Sbjct  337   DNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETI  396

Query  432   YETLSYRDNIIVIVDEAHRTQYGFKAKVDKNSGDIKYGFAKYLRDALPNATYIAFTGTPI  491
               +L+ R N+IV+ DEAHRTQYGF+AK D ++ +IKYG+AKYLRDALPNAT+++FTGTP+
Sbjct  397   MAALTERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPV  456

Query  492   EKTDRNTPAVFGNYIDIYDISNAVEDGSTVPIYYESRLVKIDLTEEGRKLIKEYEEELDE  551
               TD+NT  VFGNYID+YD+++AV DGSTV IYYESR++ ++L + +  L   Y++  ++
Sbjct  457   ASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQ-SLDLDEAYNDITED  515

Query  552   KGFSELEKTKAKWTKLEALVGAKPRIKEVAKDIVSHFESRLEVMDGKGMIVTISRKTAAN  611
             +     ++ K+KW+++EAL GAKPR+  +AKDI+ HFE+R + M GKGMIVT+SR+ A +
Sbjct  516   QEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVD  575

Query  612   LYKEIVNLRPDWHSEELKKGKIKVVMTTSSSDEPEVSKFYLTKEERRILADRFKDPEDEL  671
             LY EI+ L+P+WHS++  KG IKVVMT SSSD     +    K  R +L  R KD +DEL
Sbjct  576   LYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDEL  635

Query  672   KLVIVVDMWLTGFDVPCLHTMYIDKPMKGHTLIQAIARVNRVYNDKTGGLIVDYIGIASD  731
             +LVIV DMWLTGFDVP +HTMYIDKPMKGH L+QAIARVNRV++DK GGLIVDY+GIA  
Sbjct  636   QLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAES  695

Query  732   LKDALSFYAESGGKGDPVKLQEKAISIMLEKLEVVRDMFYGFDYKRFFTADTSQKLNIIL  791
             LK+AL  Y+ES+    ++   +KA+ +ML K +V++DM+Y +DY +F +   S++   I 
Sbjct  696   LKEALKEYTESDQAQTAID-TDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTIS  754

Query  792   EAQDFILGL-ENGKKRYIDAVVALSKAFSIAVPHPKAMEVKEEVAFFQAVKSGLIKF---  847
             ++ D+++GL E+ ++R+I +V  L+KAF++   +P A E+++E+AFF+AVK+GL+K+   
Sbjct  755   NTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQP  814

Query  848   --NTNEEQAAENYETVIKQIVDKAIYSKGVIDIFDAAGLKKPEISILSDEFLEEIKGMKH  905
               + +  +++ + E+ I+Q+V +++ + +VID++++ GL +P++SILSD+FL ++ G+K+
Sbjct  815   PKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQ  874

Query  906   KNLAIETLKKLINDQIKGRIKINLVKSKSLMKSLEDLIKKYNNKLLTAAQVIDELIKLAK  965
             KN+A+E L++L+++Q+K+ +K N   SK +   L + I+KYN++ + +++VI+ELI+LAK
Sbjct  875   KNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAK  934

Query  966   EIKESDKEPQEMGLSDYEYAFYCAVAENESAKQLMGKEKLRELATVLYKKVKENTTIDWT  1025
             +IK+ ++  +E+GL+  E AFY A+  +E+AK+ M   KLR +A  L K VKEN ++DW+
Sbjct  935   DIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWS  994

Query  1026  IRESARSKLKVIVKRTLRQYGYPPDMQELATETVLKQAELIASE  1069
              R+SA++K++V V+R L++YGYPPD+Q +A E V+ QAEL+AS+
Sbjct  995   KRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

24) Desgi_1004 in NC_021184


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  872 bits (3302),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 528/1085 (49%), Positives = 774/1085 (72%), Gaps = 59/1085 (5%)

Query  1     MKNRITENAIEEFAIELLEKAGYQYIYAPDIAPDSATPERQSFEEVLLLDCLQTAVGRIN  60
             M+ ++ E+ +E+  +E LE  +Y+Y  + +I+  + +PER+S  +V+L + L+ A+ +IN
Sbjct  1     MNFQFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKIN  60

Query  61    PKMPADVREDAIKQIQRLNSPELITNNEAFHRMLTEGIKV-SYQKDGNERGDYVWLIDYK  119
             + + +   E AI ++   +SP+L+ NN +FH  L +GI +  Y+ +G+   + V ++D+ 
Sbjct  61    SDIHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFE  120

Query  120   NPDNNDFIVTNQFTVIEKGVNKRPDIILFVNGLPLVVIELKNPADENATVKSAYKQLQTY  179
             +P+NNDF+  NQFTV++ +  KRPDI+LF+NGLP+VVIELKN+++E   V  +Y QL+TY
Sbjct  121   HPQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  180   IQAIPNLFTFNAIMVISDGLEAKAGSLSAGLSRFMTWKSSDGKIEASHLIGQLETLLKGM  239
                IP+LFTFN ++V SDG+++KAGSL+A   RFMTW+S DG  E+S  ++ L+ L++GM
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGM  240

Query  240   LNKETLLDLIRHFIVFEKSKKEDKKTGIITIQTVKKLAAYHQYYAVNRAVESTLRAAGYS  299
             LN  TLLDLIR F++F+   K          +  K LAAYHQYYAVN+AV+ +L A++  
Sbjct  241   LNPKTLLDLIRYFVLFQDDGKG---------HISKILAAYHQYYAVNKAVDRALLASS--  289

Query  300   FISGKHSLSIVMESPESYGVAGVKQQPVGDRKGGVVWHTQGSGKSLSMVFYTGKIVLAMN  359
                                         GD KGGV+WHTQGSGKSL+MVF++GK++  +N
Sbjct  290   --------------------------GQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLN  323

Query  360   NPTVVIITDRNDLDDQLFDTFA-----SSKQLLRQDPVQAEDREHLKELLKVASGGVVFT  414
             NPT+VI+TDRNDLD+QL+ TF      S+K LLRQ P QAE R +LK LL V SGG+VFT
Sbjct  324   NPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFT  383

Query  415   TIQKFQPDEGN-VFEQLSVRENIIVIADEAHRTQYGFKAKTIDDRDEQGTVIGKKIVYGF  473
             T+QKF+P++ + +   L+ R N+IV+ADEAHRTQYGF+AK  DD+       G  I YG+
Sbjct  384   TMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFNAK-YDDK-------GEGIKYGY  435

Query  474   AKYMRDALPNATYLGFTGTPIESTDINTPAVFGNYIDVYDIMQAVDDGATVRIYYESRLA  533
             AKY+RDALPNAT++GFTGTP+ STD NT  VFGNYIDVYD+ QAV DG+TV+IYYESR+ 
Sbjct  436   AKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVI  495

Query  534   KINLSEEGKKLVADLDEELDKDGLTETQKAKAKWTQLEALIGSADRVKQVARDIINHFEQ  593
              +NL++ +  L    ++  + +     Q+ K+KW+++EAL G+  RV  +A+DII+HFE 
Sbjct  496   PLNLPQ-SLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFET  554

Query  594   RQEVFEGKAMIVSMSRRIAADLYDEIIKIKPQWHSADLKKGVIKVVMTSNSSDGPEISKH  653
             RQ+   GK+MIV+MSRRIA DLYDEII++KP+WHS D  KGVIKVVMT++SSD   + +H
Sbjct  555   RQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRH  614

Query  654   HTTKEQRRALADRMKDPEDDLKLVIVRDMWLTGFDVPSMHTLYIDKPMKGHNLMQAIARV  713
                K +R  L  RMKD +D+L+LVIVRDMWLTGFDVPSMHT+YIDKPMKGHNLMQAIARV
Sbjct  615   IGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARV  674

Query  714   NRVYKDKPGGLVVDYLGIASDLKKALAFYSNSGGKGDPAISQEKAVQFMLEKIEVVAQMY  773
             NRV+KDKPGGL+VDY+GIA  LK AL  Y++S ++++ AI  +KAV++ML K +V+ +M 
Sbjct  675   NRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDML  733

Query  774   HGFAYENYFDADTSTKLSIILAAEEHILGLV-NGKKRYIDEVTALSKAFAIAIPHEQAMD  832
               + Y ++     S +   I  + + ++GL  + ++R+I  VT L+KAFA+   +  A +
Sbjct  734   YNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQE  793

Query  833   VKDEVSFFQAVKSRLAK-FDSTGAGKTN---EEMETAIRQVIDKALITEQVIDVFDAAGI  888
             ++DE++FF+AVK+ L K +++   GKT     E+E+ I Q++ ++++TE+VIDV+++ G+
Sbjct  794   LNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGL  853

Query  889   KKPDISILSEEFLLEVKNMEHKNVALEVLKKLLNDEIKSRTKKNLIQSKALMEMLENSIK  948
              +PD+SILS++FL +V  + +KNVA+E+L++LL++++KS  K N   SK + EML NSI+
Sbjct  854   EQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSIN  913

Query  949   KYHNKILTAAEVIEELIALGKDIQKMDKEPQEMGLSEYEYAFYTAIANNESARELMQKDK  1008
             KY+++ + ++ VIEELI L+KDI++ ++  +E+GL+  E AFY A+ ++E+A+  M+  K
Sbjct  914   KYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKK  973

Query  1009  LRELAVVLFEKVKENASIDWTIKESVKAKLKVIVKRTLRKYGYPPDMQKLATETVLKQAE  1068
             LR +A  L   VKEN S+DW+ ++S KAK++V V+R L+KYGYPPD+QK+A E V+ QAE
Sbjct  974   LRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAE  1033

Query  1069  LIAEE  1073
             L+A +
Sbjct  1034  LMASN  1038

25) MM_2204 in NC_003901


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  872 bits (3303),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 517/1070 (49%), Positives = 772/1070 (73%), Gaps = 61/1070 (5%)

Query  19    LERQGYQYIYAPDIAPDSDTPERDRFEDVLLLERLRKAIGRINPDIPADAREDAIRQVRR  78
             LE  +Y+Y  + +I+  + +PER    DV+L ERL KA+ +IN+DI +   E AI+++  
Sbjct  18    LESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHPRFIEKAIHELTL  77

Query  79    LNSPELISNNEAFHKMLTEGINV-SYRKDGADRGDLVWLVDFKDPENNDFLVANQFTVVE  137
              +SP+L+ NN +FH  L +GI++  Y  +G    ++V +VDF +P+NNDFL  NQFTVV+
Sbjct  78    EKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNNDFLAVNQFTVVN  137

Query  138   NDKNKRPDIILFVNGLPLVVIELKNPADENATVRSAFRQFQTYKQTIPSLFAYNGFMVIS  197
              D  KRPDI+LF+NGLP+VVIELKN+++E   V  +++Q++TYK  IP LF++N  +V S
Sbjct  138   GDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTS  197

Query  198   DGLEARSGSLSAGFTRFMAWKSSDGRGEASPLIGQLETLIKGMLEKTTLLDILRHFIVFE  257
             DG+++++GSL+A + RFM+W+S DG  E+S+ ++ L+ LI+GML+  TLLD++R F++F+
Sbjct  198   DGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPKTLLDLIRYFVLFQ  257

Query  258   KSKKEDSATGIITIQTVKKLASYHQYYAVNRAVESTLRASGYAAKENWDWDTLGIHYESP  317
                K          +  K LA+YHQYYAVN+AV+ +L AS+                   
Sbjct  258   DDGKG---------HISKILAAYHQYYAVNKAVDRALLASS-------------------  289

Query  318   ENYGLPGVKKQPVGDRKGGVIWHTQGSGKSLTMVFYTGKIVLAMDNPTLVVITDRNDLDD  377
                          GD KGGVIWHTQGSGKSLTMVF++GK++  ++NPTLV++TDRNDLD+
Sbjct  290   -----------GQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVIVTDRNDLDN  338

Query  378   QLFDTFA-----ASKQLLRQEPVQAENRDHLKQLLNVASGGIVFTTIQKFQPEEGN-VYP  431
             QL+ TF      ++K LLRQ P QAE R +LK LL+V SGGIVFTT+QKF+PE+ + + +
Sbjct  339   QLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMA  398

Query  432   KLSDRKNIIVIADEAHRTQYGFKAKNVDVKDEQGNVIGKKIVYGFAKYTRDALPNATFLG  491
              L++RKN+IV+ADEAHRTQYGF+AK     D++G+ I     YG+AKY RDALPNATF+G
Sbjct  399   ALTERKNVIVMADEAHRTQYGFNAKY----DDKGEGIK----YGYAKYLRDALPNATFVG  450

Query  492   FTGTPIEKTDVNTPVVFGNYVDIYDISQSVEDGATVKIYYESRLAKVTLSNEGkklvael  551
             FTGTP+  TD NT +VFGNY+D+YD++Q+V DG+TVKIYYESR+  + L+ ++  L    
Sbjct  451   FTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLP-QSLDLDEAY  509

Query  552   deeldkedlaeTQKIKAKWTQLEALIGSEARIKQIAKDIVTHFEQRQEVFEGKGMIVAMS  611
             ++  + ++    Q++K+KW+++EAL G+ +R+  +AKDI+ HFE RQ+   GKGMIV+MS
Sbjct  510   NDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMS  569

Query  612   RRIAADLYDEVIKIKPEWHSDDLRKGAIKVVMTSASSDGPKISKHHTTKDQRRILAERMK  671
             RRIA DLYDE+I++KPEWHSDD  KG IKVVMT++SSD   + +H   K +R +L  RMK
Sbjct  570   RRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMK  629

Query  672   NPEDELKLVIVRDMWLTGFDVPCLHTMYIDKPMKGHTLMQAIARVNRVYKDKPGSLIVDY  731
             + +DEL+LVIVRDMWLTGFDVP +HTMYIDKPMKGH LMQAIARVNRV+KDKPG+LIVDY
Sbjct  630   DVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDY  689

Query  732   LGIASDLKEALSFYSDSGGKGDPAVLQEKAVQLMLEKLEIVSQMFHGFTFDDYFEADTSR  791
             +GIA  LKEAL  Y++S ++++ A+  +KAV+LML K +++ +M+  + +  +     S 
Sbjct  690   VGIAESLKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSE  748

Query  792   KLSIILEAEEHILGL-ENGKKRYIDEVTALSKAFSLAIPHEQAMDVKDEISFYQAVKARL  850
             +   I ++ + ++GL E+ ++R+I  VT L+KAF+L   +  A +++DEI+F++AVKA L
Sbjct  749   RYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGL  808

Query  851   VKF----DGTGTGKTDEDIETAIRQVIDKALVTEQVIDVFDAAGIKKPDISILSEDFLLE  906
             VK+        T KT  ++E+ I Q++ +++VTE+VIDV+++ G+ +PD+SILS+DFL +
Sbjct  809   VKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKD  868

Query  907   VRNMEHKNLALEVLKKLLNDEIRARIKKNLIQSRSLMEMLENSITRYHNKVLTAAEVIEE  966
             V  + +KN+A+E+L++LL++++++ +K N   S+ + EML NSI +Y+++ + ++ VIEE
Sbjct  869   VEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEE  928

Query  967   LIKLSKEIKRMDKEPQEMGLSEFEYAFYTAIADNESAREVMQKEKLRELAVVLFEKVKQN  1026
             LI+L+K+IK+ ++  +E+GL+  E AFY A+  +E+A+  M+  KLR +A  L   VK+N
Sbjct  929   LIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKEN  988

Query  1027  ASIDWTIKESVRAKLKVIVKRTLRQYGYPPDMQALATETVLKQAELIADE  1076
              S+DW+ ++S +AK++V V+R L++YGYPPD+Q +A E V+ QAEL+A +
Sbjct  989   MSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

26) KN400_0449 in NC_017454


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  872 bits (3303),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 482/1059 (46%), Positives = 769/1059 (73%), Gaps = 47/1059 (4%)

Query  4     FNESIIEDATLAWLEGLGYTIRSGLDIAPGELLAERQDYSQVLLGDRLRQALARLNPSLP  63
             FNE  +E+  L WLE+L+Y  + G +I+   L +ER+   +V+L +RL +AL ++N+ + 
Sbjct  5     FNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIH  64

Query  64    VEALDDAFRKLTRPEGATLEDRNRSVHRWLVDGVTVEYRHKDGHIAGAQARVIDFDLPGN  123
                ++ A++ LT   ++ L + N + H  L++G+ +E  + +G+      +++DF+ P N
Sbjct  65    PRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQN  124

Query  124   NDWLAVNQFTVIENKHNRRPDVVLFVNGLPLVLVELKNAADENATIWSAFQQFQTYKAEL  183
             ND LAVNQFTV++    +RPD+VLF+NGLP+V++ELKN+++E   +  +++Q++TYK  +
Sbjct  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  184   PSLFTYNSLLVISDGVEARIGTLTAGKEWFKPWRTVSGESLAGPHIPELQVMLEGVFDKR  243
             P LFT+N +LV SDG++++ G+LTA  ++F  WR+  GE+ +++ ++ L+V+++G+++ +
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPK  244

Query  244   RLLDLLNFFIVFEDGGDGRLIKKMAGYHQFHAVNVAVSETLRAGKSADRAAEEIGRWEAG  303
              LLDL+ +F++F+D+G G++ K +A+YHQ+ AVN          K+ DRA          
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVN----------KAVDRA----------  284

Query  304   LQRGGEPGDRRIGVVWHTQGSGKSLTMAFYAGRVIREPAMSNPTLVILTDRNDLDDQLFG  363
             L  ++  GD + GV+WHTQGSGKSLTM F++G++I+   ++NPTLVI+TDRNDLD+QL++
Sbjct  285   LLASSGQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQ--MLNNPTLVIVTDRNDLDNQLYS  342

Query  364   TFSRC-----QDLLRQPPAQATDRADLRNKLAVNAGGVVFTTIQKFFPEEKGDRHPLLSD  418
             TF +      ++LLRQ P QA  R +L++ L+V++GG+VFTT+QKF PE++    + L++
Sbjct  343   TFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTE  402

Query  419   RRNIVVIADEAHRSQYDFID-----------GYARHMRDALPNASFIGFTGTPIELTDKN  467
             R+N++V+ADEAHR+QY+F             GYA+ +RDALPNA+F+GFTGTP+  TDKN
Sbjct  403   RKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKN  462

Query  468   TRSVFGDYISVYDIQRAVMDGATVPIYYESRLARLELEETEKPKIDPefeevtegeeier  527
             T+ VFG+YI VYD+ +AV DG+TV IYYESR+  L+L ++    +D  ++++TE++E + 
Sbjct  463   TQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITEDQEEDV  520

Query  528   keKLKSRWAQLEALVGSEKRIKLVAEDLVRHFEERQAAMEGKAMVVCMSRRICIDLYNAI  587
             K++LKS+W+++EAL G+  R+  +A D+++HFE RQ AM GK+M+V MSRRI +DLY+ I
Sbjct  521   KQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEI  580

Query  588   VALRPDWHHDDDDKGAIKVIMTGSATDPLEWQKHIRNKPRREALAKRFRSAGDPFRIVIV  647
             + L+P+WH DDDDKG IKV+MTGS++DP   Q+HI  K RR  L KR +   D +++VIV
Sbjct  581   IRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIV  640

Query  648   RDMWLTGFDAPSLATMYADKPMRGHGLMQAIARVNRVFKDKPGGLVVDYLGLADELRKAL  707
             RDMWLTGFD PS+ TMY DKPM+GH LMQAIARVNRVFKDKPGGL+VDY+G+A+ L+ AL
Sbjct  641   RDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEAL  700

Query  708   ATYTESGGTGKTAIDQADAVALMLEKYEVCKGLFHGFDWTAWLTGTPQQRLTLLPAAQEH  767
               YTES + ++TAID   AV LML KY+V ++++  +D +   +    +R   ++ + + 
Sbjct  701   KEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDY  759

Query  768   ILS-QEDGKNRLLKAVTELSKAFALAVPHEDALAIRDDVAFFQAVRAVLAK-----SGTG  821
             +++  ED ++R++K+VTEL+KAFAL   +  A  + D++AFF+AV+A L K         
Sbjct  760   VIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGK  819

Query  822   ERKSDEELDHAIRQIISKAVASDEVIDIFEAAGLKKPDISILSDEFLAEVRGMPQRNLAV  881
              RK+  E++  I Q++S++V +++VID++++ GL +PD+SILSD+FL +V G+ Q+N+AV
Sbjct  820   TRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAV  879

Query  882   ELLQKLLKGEIRNRRRKNVVQARSFTEMLEEALRRYQNRAIETAQVIEELIALARQMREA  941
             ELL++LLKG++++  + N   ++ F+EML +++ +Y++R+IET++VIEELI LA+++++ 
Sbjct  880   ELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQE  939

Query  942   SGRGEELGLTEDELAFYDALEINDSAVKVLGDDTLRAIARELADTVRRNVTIDWTMRENV  1001
               RG+ELGL  DE+AFYDAL  +++A K + D  LRAIA+EL+ TV+ N+++DW+ R++ 
Sbjct  940   QQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSA  999

Query  1002  RAQLRVLVKRILRKYGYPPDKQEKATQIVLEQTEVLSQE  1040
             +A++RV V+R+L+KYGYPPD Q  A + V+EQ+E+++ +
Sbjct  1000  KAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

27) NIS_1703 in NC_009662


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  871 bits (3300),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 522/1065 (50%), Positives = 765/1065 (72%), Gaps = 46/1065 (4%)

Query  3     NENSVENFTIDLLKSQGYDYLYGGDIALDGENPLRDSFEDVILFDRLKTAIKKINPSLPQ  62
             NE+ +E+  ++ L S +YDY  G +I++ G  P R S  DV+L +RL  A++KIN+ +  
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  63    DAIDDAIKQITQINTPDLIANNEIFHRMLTEGVKV-TYQKDGVQRGDIVWLVDFKNPQMN  121
               I+ AI ++T  ++P+L+ NN  FH  L +G+ +  Y+ +G    +IV +VDF +PQ N
Sbjct  66    RFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNN  125

Query  122   DFLVVNQFTVIENHKNKRVDIVLFINGLPLVVMELKNPTDSNANIKSAYNQLQNYKQTIP  181
             DFL VNQFTV++ +  KR DIVLFINGLP+VV+ELKN+T+    +  +Y+QL+ YK  IP
Sbjct  126   DFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  182   TLFTYNEILIISDGLEAKMGSLSAGFDRFMAWKSADGKKEASHLVSQLETLIQGLLNKET  241
              LFT+NE+L+ SDG+++K GSL+A +DRFM+W+S DG  E+S  ++ L+ LI+G+LN  T
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPKT  245

Query  242   LIDYIRFFILFEKKKKEDKGQITVQTIKKIAAYHQYYAVNKAIKSTLRAIGQNKSNFLVK  301
             L+D IR+F+LF+    ++KG+I+    K +AAYHQYYAVNKA+  +L             
Sbjct  246   LLDLIRYFVLFQ---DDGKGHIS----KILAAYHQYYAVNKAVDRAL-------------  285

Query  302   EPPANYGLPDVKEQSEGDRKAGVVWHTQGSGKSLSMLFYAGKVIQTTNNPTIVVITDRND  361
                       +   ++GD K+GV+WHTQGSGKSL+M+F++GK+IQ  NNPT+V++TDRND
Sbjct  286   ----------LASSGQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVIVTDRND  335

Query  362   LDDQLFNTFA-----TASKLLRQEPVQAASREELKKLLMVESGGVVFTTIHKFWPDDGN-  415
             LD+QL++TF      ++  LLRQ P QA +R ELK LL VESGG+VFTT++KF P++ + 
Sbjct  336   LDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNET  395

Query  416   VYETLSTRDNIIVIVDEAHRTQYGFRGRVDKKSGEIKYGFAKYLRDALPNATYIAFTGTP  475
             +  +L+ R N+IV+ DEAHRTQYGF ++ D K+  IKYG+AKYLRDALPNAT+++FTGTP
Sbjct  396   IMAALTERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTP  455

Query  476   IESTDKNTPAVFGNYIDIYDIANAVEDGATVPIYYESRLVKIDITeegkklieeyeeelD  535
             + STDKNT  VFGNYID+YD+++AV DG+TV IYYESR++ +++ +         +   D
Sbjct  456   VASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITED  515

Query  536   ARGLSEIEKAKAKYSKIEALVGAKPRIKEIAKDIVSHFESRLEVMDGKGMIVTMTWHIAA  595
                    ++ K+K S+IEAL GAKPR+  +AKDI+ HFE+R + M GKGMIVTM+++IA 
Sbjct  516   QEE-DVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAV  574

Query  596   NLYDEIIKLRPDWHSDELKKGKIKVVMTTSSSDEPHIARFYLTKEQRRTLADRFKDPQDE  655
             +LYDEII+L+P+WHSD+  KG IKVVMT SSSD   + R    K +R  L  R KD +DE
Sbjct  575   DLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDE  634

Query  656   LKLVIVVDMWLTGFDVPSLHTMYIDKPMKGHTLMQAIARVNRVYKDKTGGLIVDYIGIAS  715
             L+LVIV DMWLTGFDVPS+HTMYIDKPMKGH LMQAIARVNRV+KDK GGLIVDY+GIA 
Sbjct  635   LQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAE  694

Query  716   DLKEALSFYSDSGGKGEPARLQEEAVKVMLEKLEVVRDMLYGYDYKRYFDADTSQKLHII  775
              LKEAL  Y++S ++++ A   + AV +ML K +V++DMLY  DY ++     S++   I
Sbjct  695   SLKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTI  753

Query  776   LEVEDFILGL-ENGKKRFIDAVTALSKAFSLAVPHSEAMKIKDEVAFFQAVKSRLIKF--  832
              +  D+++GL E+ ++RFI +VT L+KAF+L   ++ A  ++DE+AFF+AVK+ L+K+  
Sbjct  754   SNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQ  813

Query  833   ----NIESENSFDYATAIKQIVDKAVSSSGVIDIFDAAGLKKPDISILSDEFLEEIKEMK  888
                       + +  + I+Q+V ++V + +VID++++ GL +PD+SILSD+FL ++  +K
Sbjct  814   PPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLK  873

Query  889   QKNLAIEALKKLINDEIKSRIKTNIVkskslkesleelIRKYNNRLLTAAEVIDELIHLA  948
             QKN+A+E L++L+++++KS +KTN   SK + E L + I KYN+R + ++ VI+ELI+LA
Sbjct  874   QKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLA  933

Query  949   KEIKQSDKEPEELGLSDYEYAFYCAVADNESARELMGKEKLKELAAVLFQKVKENTTIDW  1008
             K+IKQ ++  +ELGL+  E AFY A+  +E+A+  M   KL+ +A  L + VKEN ++DW
Sbjct  934   KDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDW  993

Query  1009  AIRESARAKLKVIIKRTLRQYGYPPDMQKLATQTVLEQAEALAND  1053
             + R+SA+AK++V ++R L++YGYPPD+QK+A + V+EQAE +A++
Sbjct  994   SKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

28) hsdR1 in NC_016894


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  871 bits (3299),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 492/1018 (49%), Positives = 760/1018 (75%), Gaps = 44/1018 (4%)

Query  22    GLGYAYAFGPDISPGGEAPERQDHREVILAERVKDALFRINRDLPQEALDEAYRQIITFN  81
             +L+Y Y  G +IS  G APER+ +++V+L ER+  AL +IN D+    ++ A +++   +
Sbjct  20    SLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHPRFIEKAIHELTLEK  79

Query  82    SPMLAENNRHFHRLLTEGIEV-SFSEKGNIRTKRAFVINYEQPETNDFLVVNQFTIIEHE  140
             SP L ENN  FH  L +GIE+  + + G+       ++++E+P+ NDFL VNQFT+++ +
Sbjct  80    SPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNNDFLAVNQFTVVNGD  139

Query  141   -ERRPDLILFINGLPLIVVELKSASDENVGISSAYNQIQTYKKDLPNLFVYNAFCILSDG  199
               +RPD++LFINGLP++V+ELK++++E VG+  +Y+Q++TYK  +P+LF +N   + SDG
Sbjct  140   YTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTSDG  199

Query  200   INAKAGTLTSNEERFMNWRTVDGVVIEPKANPQYEVLFHGMLKPQRVLEIIRYFILFQES  259
             IN+KAG+LT+N +RFM WR+ DG    + + +  +VL++GML+P+ +L++IRYF+LFQ+ 
Sbjct  200   INTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPKTLLDLIRYFVLFQD-  258

Query  260   QQSDTDKNGQKLGDKKAIIKILAAYHQYFAVQKAVEKTREAAGEDGDRKIGVIWHTQGSG  319
                         ++K  I KILAAYHQY+AV+KAV+++  A++ +GD K GVIWHTQGSG
Sbjct  259   ------------DGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQGSG  306

Query  320   KSFSMVFYTAALVRELNNPTIVVITDRNDLDDQLFATFSKSQD-----ILRQTPKLAHTR  374
             KS++MVF+++ L++ LNNPT+V++TDRNDLD+QL++TF KS++     +LRQTPK A+TR
Sbjct  307   KSLTMVFFSGKLIQMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETR  366

Query  375   KLTASQKAQQNGTNAVAINGLYELLNDREAGGIIFTTIQKFTPESGE--MPVLTDRKNVI  432
             K                +++L  +    E+GGI+FTT+QKF PE  E  M+ LT+RKNVI
Sbjct  367   K---------------ELKSLLSV----ESGGIVFTTMQKFEPEQNETIMAALTERKNVI  407

Query  433   IIADEAHRSQYGLAAKTDLKSGAVKYGYAKYLRDALPNASFIGFTGTPIDLDDRSTTSVF  492
             ++ADEAHR+QYG+ AK D K+ ++KYGYAKYLRDALPNA+F+GFTGTP+   D++T  VF
Sbjct  408   VMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVF  467

Query  493   GQCIDTYDMTRAVEDEATVRIYYENRIIKLDTVDTELIKIDAAFEDITEGQEDTERDKNK  552
             G+ ID YDMT+AV D +TV+IYYE+R+I L+  ++  + +D A++DITE+QE+  +++ K
Sbjct  468   GNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITEDQEEDVKQRLK  525

Query  553   ATWSRLEAVVGSPNRIKKLAEDIIAHYEEKSKAITGKAMVVCMSRRICAELYDAMVTLRA  612
             + WSR+EA+ G+  R+  LA DII H+E + +A+ GK+M+V MSRRI  +LYD ++ L++
Sbjct  526   SKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKP  585

Query  613   DWHSDDVNQGKIKVVMTGSAADSEKLQPHIGGKQRRDTLAKRMKDNSDELSIVLVRDMWL  672
             +WHSDD ++G IKVVMTGS++D+  +Q HIG K+RR  L KRMKD +DEL +V+VRDMWL
Sbjct  586   EWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWL  645

Query  673   TGFDVPSLHTMYIDKPMQGHGLMQAIARVNRVFKEKSGGVVVDYLGILESLKKALNQYTN  732
             TGFDVPS+HTMYIDKPM+GH LMQAIARVNRVFK+K+GG++VDY+GI ESLK AL++YT+
Sbjct  646   TGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTE  705

Query  733   SDRGNTGIDVNVAVAIMTEKLEILKDMMHGYDFSAYFGDSKVKRLRAITGGMDFVLGKSM  792
             SD+++T+ID + AV +M  K ++++DM+   D+S + ++ K  R  +I+  MD+V+G + 
Sbjct  706   SDQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGE  765

Query  793   EDQKEFKTITIELAKSHSLCAATEDAKARALEVNYFKAVKASMVKFSDSERVDPT-LSKQ  851
             ++++ F     EL+K+ +LCA+   A+    E+ +FKAVKA++VK+ ++ + + T  +  
Sbjct  766   DERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPA  825

Query  852   EVEARLHQLLERSIISEDVIDVFDVMGIKRPDISLLSEDFLEEVRAMKEKNLAVEMLRKL  911
             EVEA ++QL+ +S+++EDVIDV++ +G+ +PD+S+LS+DFL +V ++K+KN+AVE+L +L
Sbjct  826   EVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRL  885

Query  912   LEGNIKGMERSNLVKSEKFSEKLQKALNKYRNQAITNAEVIEELIRMAHEIRQMKEAEAK  971
             L G++K++ ++N   S +FSE L +++NKY +++I  + VIEELI++A +I+Q ++    
Sbjct  886   LKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNE  945

Query  972   LGLSEDEIAFYDALTADEIVREFMEDDTLKTIAQELTIAIRNNITIDWSVRKSAQASM  1029
             LGL+ DEIAFYDAL ++E  +  MED  L++IA+ELT ++++N+++DWS R SA+A M
Sbjct  946   LGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKM  1003

29) Nhal_0892 in NC_013960


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  867 bits (3285),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 508/1073 (48%), Positives = 780/1073 (73%), Gaps = 50/1073 (4%)

Query  4     KLTESAIENLAIELLANQGYQYLHGADLAPDAPNPGRPSFGDEFLVGRLQDAVARLNPTI  63
             ++ E  +E++ +E L + +Y+Y  G +++  +  P R S  D  L  RL+ A+ ++N+ I
Sbjct  4     QFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDI  63

Query  64    PPDAQEQAIKEILRLAVETGSTRELLAANEAFHRLLTNGVEVE-FQHEGRTKGDKVWLVD  122
              P   E+AI E   L++E ++  +LL  N +FH  L NG+E+E +++EG++  + V +VD
Sbjct  64    HPRFIEKAIHE---LTLEKSP--NLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVD  118

Query  123   FANPAANDCLVVNQFTVTTKSGHGHVNKRPDLVLFINGLPLVVVELKNAASENATVRSAY  182
             F +P  ND L VNQFTV     +G+  KRPD+VLFINGLP+VV+ELKN+++E   V  +Y
Sbjct  119   FEHPQNNDFLAVNQFTVV----NGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGY  174

Query  183   EQLQTYKHAIPSLFLANGLLVASDGLEARMGSLSAGFSRFMAWKTTDGKKEASHRVGQLE  242
             +QL+TYK  IP LF  N +LV+SDG++++ GSL+A + RFM+W++ DG  E+S  ++ L+
Sbjct  175   HQLETYKMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLD  234

Query  243   TLIQDVLKPATLLELIRHFTVFEKSRREDPKTGLTTVETVKKTAAYHQFYAVKKAVESTL  302
              LI+++L+P TLL+LIR F +F+    +D K  ++ +      AAYHQ+YAV+KAV+ +L
Sbjct  235   VLINGMLNPKTLLDLIRYFVLFQ----DDGKGHISKI-----LAAYHQYYAVNKAVDRAL  285

Query  303   HATGTDGSRKGGVVWHTQGSGKSLSMVFYAGKLVLALDNPTIVVLTDRNDLDDQLFDTFA  362
              A++ +G  KGGV+WHTQGSGKSL+MVF++GKL+  L+NPT+V++TDRNDLD+QL+ TF 
Sbjct  286   LASSGQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVIVTDRNDLDNQLYSTFV  345

Query  363   -----ASRQLLRQEPVQAENRDDLRDKLKVASGGVIFTTMQKFSPKNGEAIYPLLSDRRN  417
                  +++ LLRQ P QAE R +L+  L V SGG++FTTMQKF P + E+I + L++R+N
Sbjct  346   KSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKN  405

Query  418   IVVIADEAHRSQYGFKAKEVDIKDADDNIVGKKTAYGFAKYLRDALPNATFIGFTGTPVE  477
             ++V+ADEAHR+QYGF+AK     D ++ I      YG+AKYLRDALPNATF+GFTGTPV 
Sbjct  406   VIVMADEAHRTQYGFNAK---YDDKGEGI-----KYGYAKYLRDALPNATFVGFTGTPVA  457

Query  478   LDDKNTPAVFGDYVDVYDIAQAVEDGATVRIYYESRLAKVRLKEKEKEALDQRFDQVMED  537
               DKNT  VFG+Y+DVYD++QAV DG+TV+IYYESR+  + L+  +   LD+ ++++ ED
Sbjct  458   STDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRV--IPLNLPQSLDLDEAYNDITED  515

Query  538   AADYETGFSDEDELSEKAKAKWTQLEAIVGNRQRVENVARDLVAHFEERQKIFDGKGLII  597
                      +E+++ ++ K+KW+++EA+ G + RVE +A+D++ HFE RQ+   GKG+I+
Sbjct  516   ---------QEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIV  566

Query  598   AMSRRICVELYDAIVTLRLGWHSDDDAQGAIKVIMTGSSADPQAMQPHIRSKEARKAIGE  657
             +MSRRI V+LYD I+ L+  WHSDDD +G IKV+MTGSS+DP + Q HI +K  R  +  
Sbjct  567   TMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEK  626

Query  658   RLKDPGDPLKLVIVRDMWLTGFDAPCLHTLYVDKPMKGHNLMQAIARVNRVYKDKPGGLV  717
             R+KD  D L+LVIVRDMWLTGFD P +HT+Y+DKPMKGHNLMQAIARVNRV+KDKPGGL+
Sbjct  627   RMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLI  686

Query  718   VDYIGIASDLKRVLAIYTESGGKGQPTLDIDDAVRAMQEKFEVVQQMLAGFDYRRYFGAN  777
             VDY+GIA  LK  L  YTES +++Q ++D D AV  M  K++V+Q+ML  +DY ++ + +
Sbjct  687   VDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEK  745

Query  778   TSGKLTIILEAEEYVLAL-EDGKARFSKEVDLLAKAFALSVPDERAMAIKDELAFFQAVK  836
              S +   I ++ +YV++L ED + RF K V  L+KAFAL   +  A  ++DE+AFF+AVK
Sbjct  746   KSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVK  805

Query  837   ARLAKF--ERGEGKSK---EELDSAIRQLVDEAVVSDQVVDIFDAAGIKKPDISILSDEF  891
             A L K+     EGK++    E+++ I QLV ++VV+++V+D++++ G+ +PD+SILSD+F
Sbjct  806   AGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDF  865

Query  892   MAEIKGMQHRNLALELLRKILNDEIRVRSKKNLVQSRALSEMLESAIKRYQNNllsaagi  951
             + ++ G++++N+A+ELL ++L+++++   K N   S+ +SEML ++I++Y++  + ++ +
Sbjct  866   LKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKV  925

Query  952   ieelielareikeaDRRGEKLGLTEDELAFYDALEVNDSAVQVLGDNQLREIARKLVEKV  1011
             IEELI+LA++IK+ ++RG+ LGL  DE+AFYDAL  +++A + + D++LR IA+ L   V
Sbjct  926   IEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTV  985

Query  1012  KQNATIDWTVKESVRSKLKVIVKRILRKYGYPPDKQATATETILKQAELLAES  1064
             K+N ++DW+ ++S ++K++V V+R+L+KYGYPPD Q  A E ++ QAEL+A +
Sbjct  986   KENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

30) Veis_3131 in NC_008786


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  866 bits (3280),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 508/1075 (48%), Positives = 771/1075 (72%), Gaps = 54/1075 (5%)

Query  1     MAF-LAEADIEQALLTQLRRLGYSIASDDVIGPDGNAPERESHDVVVLHKRLETAVLRLN  59
             M F + E D+EQ +L  L  L+Y    ++ I+  G APER S+  VVLH RLE A+ ++N
Sbjct  1     MNFQFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKIN  60

Query  60    PALPPEARADAIRKLTQSEFPALLEENRRIHTLLTEGVDVEYYGDDGVLTAGKVRLLDFD  119
             + + P     AI+ LT    P LLE+N  +H  L +G+++E Y+D+G      V+++DF+
Sbjct  61    SDIHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFE  120

Query  120   TPENNDWLAVQQFVVINGQVNRRPDVVLFVNGLPLAVIELKAPGSAGAHLAGAFNQLQTY  179
              P+NND LAV+QF V+NG+  +RPD+VLF+NGLP+ VIELK + +    + ++++QL+TY
Sbjct  121   HPQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  180   KQQIPALFHTNALLVTSDGIAARVGSLSADLERFMPWRTTDGSAIAPKGSPELATLIEGV  239
             K +IP LF  N +LVTSDGI ++ GSL+A+ +RFM WR+ DG + ++ + + L  LI+G+
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGM  240

Query  240   FAPQRFLDLLRYFTVFGETGSG-LTKIVAGYHQFHAVNRAVESTIRASSQWQGVREEPAS  298
             + P+ +LDL+RYF +F + G G ++KI+A+YHQ+ AVN+AV+ ++ ASS           
Sbjct  241   LNPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASS-----------  289

Query  299   YGLPSVAMQARGDRRAGVIWHTQGSGKSLLMAFYAGRLVQHPAMENPTLVVLTDRNDLDD  358
                      ++GD ++GVIWHTQGSGKSL M F++G+L+Q   ++NPTLV++TDRNDLD+
Sbjct  290   ---------GQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQ--MLNNPTLVIVTDRNDLDN  338

Query  359   QLFSTFSMCRD-----LIRQKPVQAEGREHLQQLLARASGGVIFTTLQKFG-----EVAE  408
             QL+STF   ++     L+RQ P QAE R +L+ LL+  SGG++FTT+QKF       +  
Sbjct  339   QLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMA  398

Query  409   PLTTRRNVVVIADEAHRSQYGFRAKVDAKTGEVSYGFAKYLRDALPNASFIGFTGTPIEA  468
             +LT R+NV+V+ADEAHR+QYGF AK D K   + YG+AKYLRDALPNA+F+GFTGTP+ +
Sbjct  399   ALTERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVAS  458

Query  469   TDVNTLAVFGNYIDVYDISRAVEDGATVPIYYESRLARIELDEDEKPKLNAEVEALTEDE  528
             TD NT  VFGNYIDVYD+++AV DG+TV IYYESR+  ++L +     L+   + +TED+
Sbjct  459   TDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITEDQ  516

Query  529   AVTEQEKLKAKWATVEKLVGSDKRLALVAQDLVAHFEDRLTALDGKAMVVCMSRRIAVAL  588
                 +++LK+KW+ +E L G+  R+  +A+D++ HFE R  A+ GK+M+V MSRRIAV L
Sbjct  517   EEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDL  576

Query  589   YDEIIKLRPDWHSTDDAAGAVKIVMTGAASDPPAWQQHIGNkarrdllakrardakdPLK  648
             YDEII+L+P+WHS DD  G +K+VMTG++SDP + Q+HIG K RR +L KR +D +D L+
Sbjct  577   YDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQ  636

Query  649   LVIVRDMWLTGFDAPCMHTMYVDKPMQGHGLMQAIARVNRVFLDKPAGLIVDYIGIAQSL  708
             LVIVRDMWLTGFD P MHTMY+DKPM+GH LMQAIARVNRVF DKP+GLIVDY+GIA+SL
Sbjct  637   LVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESL  696

Query  709   KSALAQYSAGDRANTGVDEAQAVAVMQEKYEVVRDMYHGFDYATALNGTPQQRLAMMAGA  768
             K AL +Y+ +D+A+T++D  +AV +M  KY+V++DM   +DY+   +    +R   ++ +
Sbjct  697   KEALKEYTESDQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNT  756

Query  769   IEWILDKQQQWTAAETTDEGKKNAQRRYQDAVlalskayslasasDEARGIREEIGFFQA  828
             ++ +++  +             + ++R+  +V  L+KA++L ++   A+ + +EI+FF+A
Sbjct  757   MDYVIGLGE-------------DERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKA  803

Query  829   IRAALVK-----SATGSGVTSQERDFAIQQIVSRAVISTEIVDILKAAGIQSPDLSILSD  883
             ++A+LVK         +  T+ E +  I+Q+VS++V++ +++D+ ++ G++ PDLSILSD
Sbjct  804   VKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSD  863

Query  884   EFLAEVQQMQKKNLALEALRKLINDGIRSRSKANIVQTRAFSERLEDAVARYHANAITTA  943
             +FL +V+ +++KN+A+E L +L+++ ++S  K+N   ++ FSE L +++ +Y++ +I T+
Sbjct  864   DFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETS  923

Query  944   EVLQELIQLAKDIRAARQRGEEAGLSDEEIAFYDALAENESAVQAMGDDKLKVIAHELLG  1003
              V++ELIQLAKDI+  +QRG+E GL+ +EIAFYDAL  +E+A +AM D KL+ IAHEL  
Sbjct  924   KVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTK  983

Query  1004  SLKGNVSVDWAHRDSARARMRVLVKRILRKYGYPPDLQDAAVQTVLQQAEALSAG  1058
             ++K N+SVDW+ RDSA+A+MRV V+R+L+KYGYPPDLQ  AV+ V++QAE +++ 
Sbjct  984   TVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

31) Syn6312_0882 in NC_019680


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  864 bits (3271),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 509/1054 (49%), Positives = 773/1054 (74%), Gaps = 28/1054 (2%)

Query  1     MSF-VTEDDIEQVLIEQLQHLGYHYLPDSVANPDGTAPERESYADVILPQRLRDALDRLN  59
             M+F   EDD+EQV++E L+ L+Y+Y  ++  +  G APER S  DV+L +RL  AL ++N
Sbjct  1     MNFQFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKIN  60

Query  60    PTIPATARDDAFKKLIATEKPNLIEENRRLHQLLIEGIDVEFYSDDGTIRGDKVYAIDFA  119
             + I +   + A+  L     PNL+E+N  +H+ LI+GI++E Y D+G    + V  +DF 
Sbjct  61    SDIHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFE  120

Query  120   QPEQNDWLVLNQFTVIEAGQNRRSDVVVFVNGLPLAVIEIKNPGTETATLAAAYNQLQTY  179
             +P++ND L +NQFTV++++  +R+D+V+F+NGLP+ VIE+KN+  ET  +  +Y+QL+TY
Sbjct  121   HPQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  180   KAQISSLFRTNAVLVTTDGLMARIGSLTADLERFMPWRTTDGETIAPKGTPEMSTLVEGV  239
             K +I+ LF  N VLVT+DG+ ++ GSLTA+ +RFM WR+ DGET ++ + + +  L++G+
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGM  240

Query  240   FTKRHLLNLIQNFTVFGDDGTG-ITKIIAGYHQFHGVQKAIAKTIAATHQTGDRKAGVIW  298
             +  + LL+LI+ F +F DDG G I+KI+A+YHQ+ +V+KA+ +++ A+   GD K+GVIW
Sbjct  241   LNPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIW  300

Query  299   HTQGSGKSLLMAFYVGQLVRRPELENPTIVVITDRNDLDDQLFATFAMCRD-----LIRQ  353
             HTQGSGKSL M F+ G+L++   L+NPT+V++TDRNDLD+QL++TF   ++     L+RQ
Sbjct  301   HTQGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQ  358

Query  354   TPQQANSREDLQTLLNQVSGGVIFTTIQKFAPPTGETRYPVLTERRNVIVIADEAHRSQY  413
             TP+QA++R +L++LL+  SGG++FTT+QKF P   ET  + LTER+NVIV+ADEAHR+QY
Sbjct  359   TPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQY  418

Query  414   GFKAKVDQKSGVIAYGFAKYLRDALPHASFIGFTGTPIEASDVNTPAVFGNYIDIYDISR  473
             GF+AK D+K+  I YG+AKYLRDALP+A+F+GFTGTP+ ++D NT  VFGNYID+YD+++
Sbjct  419   GFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQ  478

Query  474   AVEDGATVPIYYESRLARIELPEDEKPKidaeiedliddedsdQARLSQKWATVQALVGA  533
             AV DG+TV IYYESR+  ++LP+        +     ++ED  Q RL  KW+ ++AL GA
Sbjct  479   AVADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQ-RLKSKWSRIEALAGA  537

Query  534   EKRLKQVARDLVTHFENRITALKGKAMIVCMSRAICVKLYNHIIELRPDWHSDDEQAGII  593
               R+  +A+D++ HFE R  A+KGK+MIV MSR I V LY++II L+P+WHSDD++ G+I
Sbjct  538   KPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVI  597

Query  594   KIVMTGAASDPPEWQPHIGNKARRDLMAKRLKDPTDPLQLVIVRDMWLTGFDAPALHTMY  653
             K+VMTG++SDP   Q HIG K RR ++ KR+KD  D LQLVIVRDMWLTGFD P++HTMY
Sbjct  598   KVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMY  657

Query  654   VDKPMKGHGLMQAIARVNRVFRDKPAGLVVDYIGIGQRLREALRDYSAQDQRQTGIDEAE  713
             +DKPMKGH LMQAIARVNRVF+DKP+GL+VDY+GI++ L+EAL++Y+  DQ QT+ID   
Sbjct  658   IDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDK  717

Query  714   AVALMLEKYDVVRAMFHGFNYQRGLDGTPQERLVVMAEAMEWILDQQHQAALQETEPTKQ  773
             AV LML KYDV++ M+  ++Y +       ER   ++++M+ ++      +L E E    
Sbjct  718   AVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVI------GLGEDE----  767

Query  774   KQARRRYQDavlalskafalaaasdearsIRDEVGLFQTIRAALVKSTTGPGQ-----SA  828
                R+R+  +V  L+KAFAL A+   A+ + DE+++F++++A+LVK    P +     ++
Sbjct  768   ---RQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTP  824

Query  829   AEREFAVQQIIDRAVVSTEIVDILSAAGlsspdisilsddfllEVRQMEKKNLAIEALRR  888
             AE E  ++Q++ ++VV+ +++D+  + GL  PD+SILSDDFL +V  + +KN+A+E L R
Sbjct  825   AEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNR  884

Query  889   LLNDEVRSRSANNITQQKKFSERLEQAIARYHTNALSTVEVIQELINLAQDIKAAKARGE  948
             LL+++V+S    N T  K+FSE L ++I +Y++ ++ T  VI+ELI+LA+DIK  + RG+
Sbjct  885   LLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGN  944

Query  949   NQGLSADEYAFYDALAENQSAVEVMGNEQLKIIAHELLVSLKSNVTVDWAHRESARARLR  1008
             + GL++DE AFYDAL  +++A   M + +L+ IAHEL  ++K N++VDW+ R+SA+A++R
Sbjct  945   ELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMR  1004

Query  1009  TIVKRILKKYGYPPDMQAMAVQTVLQQAEALSAH  1042
               V+R+LKKYGYPPD+Q MAV+ V++QAE ++++
Sbjct  1005  VAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

32) Turpa_2677 in NC_018020


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  864 bits (3273),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 493/1046 (48%), Positives = 765/1046 (74%), Gaps = 26/1046 (2%)

Query  7     NEDLLEQAALQWFKEQGYTHIHGSTIAPGEPAAERESFEEVVLSGRIRDALARINPTLST  66
             NED LEQ  L+W+   +Y    G+ I+    A+ER S  +VVL  R+  AL +IN+ +  
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  67    EVIDEAHKQLMRMDAPTCLINNRTFHRYVTDGISV-SYSKNGDERVEPVKIIDFEKPENN  125
               I+ A  +L    +P  L NN TFH  + +GI +  Y  +G+  VE VKI+DFE P+NN
Sbjct  66    RFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNN  125

Query  126   DWLVVNQFAIIAKPYHRRPDIIVFLNGLPLVVFELKNMVGAP-TVADAYRQLQTYKAQIP  184
             D L VNQF+++   Y +RPDI++F+NGLP+VV+ELKN       V D+Y+QL+TYK +IP
Sbjct  126   DFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  185   KLFNYNELMVVSDGNATTLGTLTADESRFMPWKYIESEKLISGGKLSIQVVIEGVFEKRR  244
             +LF +NE++V SDG  T  G+LTA+  RFM W+  ++E   S++  S++V+I+G+++ + 
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPKT  245

Query  245   FLDLIRYFVVYEDNYGGEVIKKIAGYHQFHAVNRALAETVRATGANGDRRIGVVWHTQGS  304
             +LDLIRYFV+++D+  G++ K +A+YHQ+ AVN+A+  ++ A++++GD + GV+WHTQGS
Sbjct  246   LLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQGS  305

Query  305   GKSLTMAFYAGRVVQSAAMENPTVLVITDRNDLDDQLAGTFSRCHE-----ILRQNPTQA  359
             GKSLTM F++G+++Q   ++NPT++++TDRNDLD+QL +TF +        +LRQ P QA
Sbjct  306   GKSLTMVFFSGKLIQ--MLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQA  363

Query  360   ENRDDLKEKLKVASGGIIFTTVQKFFPDEKGMKHPLLSDRRNIVVIADEAHRSQYSFGAR  419
             E R +LK  L V SGGI+FTT+QKF P+++    + L++R+N++V+ADEAHR+QY+F A+
Sbjct  364   ETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFNAK  423

Query  420   VVDVKGASGQVEGKEITYGFAQHMRDALPNASFIGFTGTPIELSDKNTRAVFGEYISVYD  479
               D         G  I YG+A+ +RDALPNA+F+GFTGTP+  +DKNT+ VFG+YI VYD
Sbjct  424   YDD--------KGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYD  475

Query  480   IQRAVEDGATVRIYYESRLAKIALDEKERPKLDADFEEVTegeedlkkeklkSRWAQLEA  539
             + +AV DG+TV+IYYESR+  I+L+  +   LD  ++++TE++E+  K++LKS+W+++EA
Sbjct  476   MTQAVADGSTVKIYYESRV--IPLNLPQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEA  533

Query  540   LVGAPKRVKLIAEDIVRHWEGRKAAMKGKAMIVCMSRRICVDMYNAIVKIRPNWHSENDA  599
             L GA  RV  +A DI++H E R+ AMKGK+MIV MSRRI VD+Y+ I++++P+WHS++D 
Sbjct  534   LAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDD  593

Query  600   EGSIKIIMTGSASDPAEYQPHVRSKQRREDMAKRFKKSADSLEIVIVRDMWLTGFDAPCA  659
              G IK++MTGS+SDP+ +Q H+ +K+RR  + KR K   D L++VIVRDMWLTGFD P  
Sbjct  594   KGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSM  653

Query  660   HTMYVDKPMKGHGLMQAIARVNRVFEDKKGGLVVDYLGLADSLKSALANYTDSGGEGKPT  719
             HTMY+DKPMKGH LMQAIARVNRVF DK GGL+VDY+G+A+SLK AL +YT+S ++++ +
Sbjct  654   HTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTA  712

Query  720   FDQDDAVAVMLEKYEICCGLFHGFDWTKFKSGSPAERLGIMPLAQEHILS-QKDGAERLI  778
             +D D AV +ML KY++  +++  +D +KF+S   +ER   ++ + + +++   D  +R+I
Sbjct  713   IDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFI  772

Query  779   QHVAELTNAMALAMPHDEAKKIVEDVAFFQAIKAVLTK-----PTTRQARTEEDMNRAIQ  833
             + V+EL +A AL   +  A+ + +++AFF+A+KA L K        +  +T  +++  I+
Sbjct  773   KTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEIN  832

Query  834   QIISRALVSDEVIDVFRAAGLKKPDVSILSDEFLMEIQGMKHKNLAIELLRRLLNDEIKT  893
             Q++S+++V+++VIDV+++ GL +PD+SILSD+FL +++G+K+KN+A+ELL RLL++++K+
Sbjct  833   QLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKS  892

Query  894   RGQRNVVESRSFSKMLEDAIQKYKNRAIETVQVIEELIKLAKELRDAHARGEQLGLTEDE  953
               + N   S+ FS ML ++I+KY++R+IET +VIEELI+LAK++++ + RG++LGL  DE
Sbjct  893   LMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDE  952

Query  954   MAFYDALEVSDSAVKIMGDKVLSEIARELVKSIKANVSIDWTVRENVRAKLRTVVKRILR  1013
             +AFYDAL   ++A K M DK L  IA+EL K++K N+S+DW+ R++ +AK+R  V+R+L+
Sbjct  953   IAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLK  1012

Query  1014  QSGYPPDKQEKAVETVLEQVERLSEQ  1039
             + GYPPD Q  AVE V+EQ E ++ +
Sbjct  1013  KYGYPPDLQKMAVEQVVEQAELMASN  1038

33) Lreu_0874 in NC_009513


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  863 bits (3269),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 510/1047 (49%), Positives = 768/1047 (74%), Gaps = 25/1047 (2%)

Query  6     NEENIEGIALRCLDEVGYQVYKSASYTSPNVEIDAERNNDHTQPILKGQLENALRKLNSG  65
             NE+++E + L  L+ ++Y+ YK ++   +   + +ER++D  + +L  +LE+ALRK+NS+
Sbjct  6     NEDDLEQVVLEWLESLSYD-YKKGN-EISMTGLAPERKSD-KDVVLHERLEKALRKINSD  62

Query  66    LDDEVYRNAIHQFEMLADSPDMMLNNHKLHELIIGGAKVKTSIKGEDRTITLYPI-DFKN  124
             ++     +AIH++  L  SP+++ NN  +HE +I G  +       +  + +  I DF +
Sbjct  63    IHPRFIEKAIHELT-LEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEH  121

Query  125   VDNNTFIATNQFTMKQGEHERRPDITLFINGLPLVTFELKNPANANVGIQQAFAQFSTYK  184
              +NN F+A NQFT+ +G+  +RPDI LFINGLP+V +ELKN++N  VG+++++ Q+ TYK
Sbjct  122   PQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYK  181

Query  185   EEISSYMQYNEILIVSDGINARAGSLTAGIDRFMRWREPK-NVDIDDSMMELEVLIKYML  243
               I+    +NE+L+ SDGIN++AGSLTA  DRFM WR    + +   S+  L+VLI+ ML
Sbjct  182   MRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGML  241

Query  244   TPSDLLNIIQNFILFESDGDKTI-KILAAYHQYYMVNKAVKRTSKVLADPDDKRIGVVWH  302
              P  LL++I+ F+LF+ DG   I KILAAYHQYY VNKAV R+    ++ +D + GV+WH
Sbjct  242   NPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWH  301

Query  303   TTGSGKSLSMVFYSGIVARKLGNPTILVINDRNDLDDQLFGTFA-----AAHEYLQQNPD  357
             T GSGKSL+MVF+SG + + L NPT++++ DRNDLD+QL++TF      ++   L+Q P 
Sbjct  302   TQGSGKSLTMVFFSGKLIQMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPK  361

Query  358   HAESRGEVRKYMSKNSGGIVFSTIQKFSPNFDAGEEHMPILTNRSNVIVMVDEAHRSQYG  417
             +AE+R E++  +S +SGGIVF+T+QKF P  +  E  M+ LT+R NVIVM DEAHR+QYG
Sbjct  362   QAETRKELKSLLSVESGGIVFTTMQKFEP--EQNETIMAALTERKNVIVMADEAHRTQYG  419

Query  418   MQAKLTD--NGIRYGYAKYLREALPNASFIGFTGTPINTEDKSTVAMFGNYIDVYDITQA  475
              +AK  D  +GI+YGYAKYLR+ALPNA+F+GFTGTP+ + DK+T  +FGNYIDVYD+TQA
Sbjct  420   FNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQA  479

Query  476   VNDHATVRIYYESHVFPLKLKDN-AIDE-YQKLIKEAGINDDPNLRETERRNRAFTRLEA  533
             V D +TV+IYYES+V+PL+L ++  +DE Y+      +I +D +    +R +   +R+EA
Sbjct  480   VADGSTVKIYYESRVIPLNLPQSLDLDEAYN------DITEDQEEDVKQRLKSKWSRIEA  533

Query  534   LAGAKPRLEKIAQHFVHHFESRQKEEFGKSMIVEMSRQNAVKLYNEIAKLRPEWINDDIH  593
             LAGAKPR+E +A+++++HFE+RQ+   GK+MIV MSR+ AV LY+EI +L+PEW +DD +
Sbjct  534   LAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDD  593

Query  594   KGKIKVIMTSNASDGPEFAKFKTSKQDRFTLQQRMKDNDDELQIVIVVDMWLTGFDVPSM  653
             KG IKV+MT+++SD   F +   +K+ R  L++RMKD +DELQ+VIV DMWLTGFDVPSM
Sbjct  594   KGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSM  653

Query  654   NTMYIDKPMQGHNLIQAIARVNRVFKNKDSGLIVDYIGIADALRFALNVYTKDDQGKVGI  713
             +TMYIDKPM+GHNL+QAIARVNRVFK+K +GLIVDY+GIA++L+ AL+ YT  DQ++ +I
Sbjct  654   HTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAI  713

Query  714   NVDRALMLLKEKYDIIKEDFLYGIDYSEFDSDDSQTRQKAVTRVVNELAAEDDETKQKFF  773
             + D+A+ L+  KYD+I +D LY +DYS F+S+    R  +++  ++ + + +++ +Q+F+
Sbjct  714   DTDKAVELMLLKYDVI-QDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFI  772

Query  774   DVVTELQKAYALVSTQPEAQDLSAEIAFFKTVKVFLTKLEAPDDPDDSKEIHSSVDYRMQ  833
               VTEL KA+AL +T+P AQ+L+ EIAFFK+VK  L KL  P   + ++   + V+  ++
Sbjct  773   KTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEIN  832

Query  834   QLLDQSIISEPNVDIYRDLGLERPNLDLISEQFLEKVNEITEKDLAITLLEKLLKGQVKA  893
             QL+ QS+++E  +D+Y+ LGLE+P+L ++S++FL  V+ + +K++A+ LL++LLKGQVK+
Sbjct  833   QLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKS  892

Query  894   YQKTNIVKGKKFEELLQESIDDYNRRGITSEIVIRKLIDMAKEINKEQQEGKNLGLSKEE  953
               KTN   +K+F E+L +SI+ YN R+I +  VI  LI++AK+I++EQQ G++LGL+ +E
Sbjct  893   LMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDE  952

Query  954   VAFYDALADHEKAVQELGEEKLHLIAAELVKTVKQQSGVDWERRSNVRAKMRVAVKHLLR  1013
             +AFYDAL  HE A + + + KL+ IA EL KTVK++ +VDW +R + +AKMRVAV++LL+
Sbjct  953   IAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLK  1012

Query  1014  KYGYPPDIAPDAIKTVVKQAEQMASQE  1040
             KYGYPPD+   A+  VV QAE MAS++
Sbjct  1013  KYGYPPDLQKMAVEQVVEQAELMASNQ  1039

34) LAR_0819 in NC_010609


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  863 bits (3269),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 510/1047 (49%), Positives = 768/1047 (74%), Gaps = 25/1047 (2%)

Query  6     NEENIEGIALRCLDEVGYQVYKSASYTSPNVEIDAERNNDHTQPILKGQLENALRKLNSG  65
             NE+++E + L  L+ ++Y+ YK ++   +   + +ER++D  + +L  +LE+ALRK+NS+
Sbjct  6     NEDDLEQVVLEWLESLSYD-YKKGN-EISMTGLAPERKSD-KDVVLHERLEKALRKINSD  62

Query  66    LDDEVYRNAIHQFEMLADSPDMMLNNHKLHELIIGGAKVKTSIKGEDRTITLYPI-DFKN  124
             ++     +AIH++  L  SP+++ NN  +HE +I G  +       +  + +  I DF +
Sbjct  63    IHPRFIEKAIHELT-LEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEH  121

Query  125   VDNNTFIATNQFTMKQGEHERRPDITLFINGLPLVTFELKNPANANVGIQQAFAQFSTYK  184
              +NN F+A NQFT+ +G+  +RPDI LFINGLP+V +ELKN++N  VG+++++ Q+ TYK
Sbjct  122   PQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYK  181

Query  185   EEISSYMQYNEILIVSDGINARAGSLTAGIDRFMRWREPK-NVDIDDSMMELEVLIKYML  243
               I+    +NE+L+ SDGIN++AGSLTA  DRFM WR    + +   S+  L+VLI+ ML
Sbjct  182   MRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGML  241

Query  244   TPSDLLNIIQNFILFESDGDKTI-KILAAYHQYYMVNKAVKRTSKVLADPDDKRIGVVWH  302
              P  LL++I+ F+LF+ DG   I KILAAYHQYY VNKAV R+    ++ +D + GV+WH
Sbjct  242   NPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWH  301

Query  303   TTGSGKSLSMVFYSGIVARKLGNPTILVINDRNDLDDQLFGTFA-----AAHEYLQQNPD  357
             T GSGKSL+MVF+SG + + L NPT++++ DRNDLD+QL++TF      ++   L+Q P 
Sbjct  302   TQGSGKSLTMVFFSGKLIQMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPK  361

Query  358   HAESRGEVRKYMSKNSGGIVFSTIQKFSPNFDAGEEHMPILTNRSNVIVMVDEAHRSQYG  417
             +AE+R E++  +S +SGGIVF+T+QKF P  +  E  M+ LT+R NVIVM DEAHR+QYG
Sbjct  362   QAETRKELKSLLSVESGGIVFTTMQKFEP--EQNETIMAALTERKNVIVMADEAHRTQYG  419

Query  418   MQAKLTD--NGIRYGYAKYLREALPNASFIGFTGTPINTEDKSTVAMFGNYIDVYDITQA  475
              +AK  D  +GI+YGYAKYLR+ALPNA+F+GFTGTP+ + DK+T  +FGNYIDVYD+TQA
Sbjct  420   FNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQA  479

Query  476   VNDHATVRIYYESHVFPLKLKDN-AIDE-YQKLIKEAGINDDPNLRETERRNRAFTRLEA  533
             V D +TV+IYYES+V+PL+L ++  +DE Y+      +I +D +    +R +   +R+EA
Sbjct  480   VADGSTVKIYYESRVIPLNLPQSLDLDEAYN------DITEDQEEDVKQRLKSKWSRIEA  533

Query  534   LAGAKPRLEKIAQHFVHHFESRQKEEFGKSMIVEMSRQNAVKLYNEIAKLRPEWINDDIH  593
             LAGAKPR+E +A+++++HFE+RQ+   GK+MIV MSR+ AV LY+EI +L+PEW +DD +
Sbjct  534   LAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDD  593

Query  594   KGKIKVIMTSNASDGPEFAKFKTSKQDRFTLQQRMKDNDDELQIVIVVDMWLTGFDVPSM  653
             KG IKV+MT+++SD   F +   +K+ R  L++RMKD +DELQ+VIV DMWLTGFDVPSM
Sbjct  594   KGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSM  653

Query  654   NTMYIDKPMQGHNLIQAIARVNRVFKNKDSGLIVDYIGIADALRFALNVYTKDDQGKVGI  713
             +TMYIDKPM+GHNL+QAIARVNRVFK+K +GLIVDY+GIA++L+ AL+ YT  DQ++ +I
Sbjct  654   HTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAI  713

Query  714   NVDRALMLLKEKYDIIKEDFLYGIDYSEFDSDDSQTRQKAVTRVVNELAAEDDETKQKFF  773
             + D+A+ L+  KYD+I +D LY +DYS F+S+    R  +++  ++ + + +++ +Q+F+
Sbjct  714   DTDKAVELMLLKYDVI-QDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFI  772

Query  774   DVVTELQKAYALVSTQPEAQDLSAEIAFFKTVKVFLTKLEAPDDPDDSKEIHSSVDYRMQ  833
               VTEL KA+AL +T+P AQ+L+ EIAFFK+VK  L KL  P   + ++   + V+  ++
Sbjct  773   KTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEIN  832

Query  834   QLLDQSIISEPNVDIYRDLGLERPNLDLISEQFLEKVNEITEKDLAITLLEKLLKGQVKA  893
             QL+ QS+++E  +D+Y+ LGLE+P+L ++S++FL  V+ + +K++A+ LL++LLKGQVK+
Sbjct  833   QLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKS  892

Query  894   YQKTNIVKGKKFEELLQESIDDYNRRGITSEIVIRKLIDMAKEINKEQQEGKNLGLSKEE  953
               KTN   +K+F E+L +SI+ YN R+I +  VI  LI++AK+I++EQQ G++LGL+ +E
Sbjct  893   LMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDE  952

Query  954   VAFYDALADHEKAVQELGEEKLHLIAAELVKTVKQQSGVDWERRSNVRAKMRVAVKHLLR  1013
             +AFYDAL  HE A + + + KL+ IA EL KTVK++ +VDW +R + +AKMRVAV++LL+
Sbjct  953   IAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLK  1012

Query  1014  KYGYPPDIAPDAIKTVVKQAEQMASQE  1040
             KYGYPPD+   A+  VV QAE MAS++
Sbjct  1013  KYGYPPDLQKMAVEQVVEQAELMASNQ  1039

35) SYN_00497 in NC_007759


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  863 bits (3268),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 509/1051 (49%), Positives = 766/1051 (73%), Gaps = 36/1051 (3%)

Query  6     ESDVEEFVIELLQNQDFEY-----LSPEQQENERESLSTVIFRDRLKQAINQINPKVPAP  60
             E D+E+ V+E L++  ++Y     +S      ER S   V++++RL +A+ +IN+ + + 
Sbjct  7     EDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHPR  66

Query  61    AREQAFKQVFNLSSQSLMVNNEAFHLMLTEGIEVE-YMGKKGIKGDKVSLIDFENIENNE  119
               E+A+ ++    S +L+ NN +FH  L +GIE+E Y +      + V ++DFE+ +NN+
Sbjct  67    FIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNND  126

Query  120   FLVCNQFTVIENNINKRPDVVVFINGLPLVVIELKNPADENATVQKAFTQLQNYKKAIPS  179
             FL  NQFTV++ +  KRPD+V+FINGLP+VVIELKN+++E   V+ ++ QL+ YK  IP 
Sbjct  127   FLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQ  186

Query  180   LFHYNSILIASDGLDAKTGTISSDISRFVAWKSKDGFTEDKETVPQIETMVRGMLSKETL  239
             LF +N +L++SDG+++K+G+++++  RF++W+SKDG TE   +++ ++ ++ GML+  TL
Sbjct  187   LFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPKTL  246

Query  240   IDLIRHFIVFEKSKKEDLETGLTSVVAIKKIAAYHQYYAVNKAIQSTLIASGTDGNRKAG  299
             +DLIR F++F+   K ++          K +AAYHQYYAVNKA++ +L+AS+ +G+ K+G
Sbjct  247   LDLIRYFVLFQDDGKGHIS---------KILAAYHQYYAVNKAVDRALLASSGQGDGKGG  297

Query  300   VVWHTQGSGKSLSMVFYTGKTVFKLNNPTVVVLTDRNDLDDQLFDTFASCKQ-----LLR  354
             V+WHTQGSGKSL+MVF++GK +  LNNPT+V++TDRNDLD+QL+ TF   K      LLR
Sbjct  298   VIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLR  357

Query  355   QEPVQAESRESLKNLLKVAGGGIVFTTIQKFFPESGASDYEQLSERKNIIVIADEAHRSQ  414
             Q P QAE+R  LK+LL V +GGIVFTT+QKF PE   +    L+ERKN+IV+ADEAHR+Q
Sbjct  358   QTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQ  417

Query  415   YGFGAKTRIVKKNGKDEEAVTRYGFAKYMRDALPNASFIGFTGTPIEKEDASTPAVFGNY  474
             YGF AK         D     +YG+AKY+RDALPNA+F+GFTGTP+   D +T  VFGNY
Sbjct  418   YGFNAKY-------DDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNY  470

Query  475   VDVYDIAQAVEDGATVKIFYESRLAKVHLKPEERAKLDeeaesigegeetakekakakw-  533
             +DVYD++QAV DG+TVKI+YESR+  + L+  +   LDE  + I E++E    +      
Sbjct  471   IDVYDMTQAVADGSTVKIYYESRV--IPLNLPQSLDLDEAYNDITEDQEEDVKQRLKSKW  528

Query  534   aqieaIVGHSDRLKTVAADIIDHFEKRQQVFEGKGMIVCMSRRIAVELYEQIIELRPEWE  593
             ++IEA+ G   R+ ++A DII+HFE RQQ   GKGMIV MSRRIAV+LY++II L+PEW+
Sbjct  529   SRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWH  588

Query  594   NDDLKKGCIKVVMTSASSDPEKWQKHSTTKKDRKAIADRFKDTADPLKLVIVRDMWLTGF  653
             +DD  KG IKVVMT++SSDP   Q+H   KK R  +  R KD  D L+LVIVRDMWLTGF
Sbjct  589   SDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGF  648

Query  654   DVPCLHTMYVDKPMRGHNLMQAIARVNRVFKDKPGGLIVDYIGIASDLKSALATYTASGG  713
             DVP +HTMY+DKPM+GHNLMQAIARVNRVFKDKPGGLIVDY+GIA  LK AL  YT S +
Sbjct  649   DVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-D  707

Query  714   KGTPTLDQEEAVATLLEKFEIVEQMFDGFDYKGFFTSSTQEKLILILEAQEHILGL-EDG  772
             ++  ++D + AV  +L K++++++M+  +DY  F +    E+   I ++ + ++GL ED 
Sbjct  708   QAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDE  767

Query  773   KNRFTKQVSLLSQAFALSVPHPKAMEIKDEVGFFQTVKARLVK-FEPTGSG---KSDAEV  828
             ++RF K V+ L++AFAL   +P A E++DE++FF++VKA LVK ++P   G   K+ AEV
Sbjct  768   RQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEV  827

Query  829   ETAIRQIVDKAVVSDGIIDVFDAAGIKKPDISILSDDFMEEVRHMERKNLALELLKKILN  888
             E+ I Q+V ++VV++++IDV+++ G+ +PD+SILSDDF+ +V  + +KN+A+ELL+++L+
Sbjct  828   EAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLK  887

Query  889   DEIKTRTRKNLIQSKKLSEMLENAINKYQNNLLTTAQVIEELIKLAKEFKESDKRGKDLN  948
             +++K+  + N   SK++SEML N+INKY++  + T++VIEELI+LAK++K+ ++RG++L 
Sbjct  888   GQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELG  947

Query  949   LNDEELAFYDALANNESAKQVLGDKQLAVIAIEVFNSIKRNATIDWTLKETVRARLRRDV  1008
             LN +E+AFYDAL ++E+AK+ + DK+L  IA E+ +++K N ++DW+ +++ +A++R  V
Sbjct  948   LNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAV  1007

Query  1009  KRILKRYGYPPDMQLLATENVLKQAELMADG  1039
             +R+LK+YGYPPD+Q +A E+V+ QAELMA  
Sbjct  1008  RRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

36) Metho_1322 in NC_019977


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  863 bits (3270),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 511/1082 (48%), Positives = 774/1082 (72%), Gaps = 61/1082 (5%)

Query  7     TESGIEKFAIELLEHQGYRYVYAPDIAPDSDTPERDRFEDVLLLERLRTAVGRINPNVPA  66
              E ++E+  +E LE  +Y Y  + +I+  + +PER    DV+L ERL  A+ +IN+++ +
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  67    DAREDAIRQVRRLNSPELISNNETFHRMLTEGINV-SYQKDGNDRGDLVWLIDFNDTENN  125
                E AI+++   +SP+L+ NN TFH  L +GI++  Y+ +G+   ++V ++DF++ +NN
Sbjct  66    RFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNN  125

Query  126   EFLVANQFTVIENDVNKRPDIILFVNGLPLVVIELKNPADENATVRSAFRQLQTYKQTIP  185
             +FL  NQFTV++ D  KRPDI+LF+NGLP+VVIELKN+++E   V  +++QL+TYK  IP
Sbjct  126   DFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  186   SLFAYNGFMVISDGLEARSGSLSAGFTRFMTWKSSDGRVEASPLIGQLETLIKGMLEKTT  245
              LF++N  +V SDG+++++GSL+A + RFMTW+S DG  E+S+ ++ L+ LI+GML+  T
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPKT  245

Query  246   LLDILRHFIVFEKSKKEDSTTGIITIRTVKKLASYHQYYAVNRAVESTLRASGYVAKEKW  305
             LLD++R F++F+   K + +         K LA+YHQYYAVN+AV+ +L AS+       
Sbjct  246   LLDLIRYFVLFQDDGKGHIS---------KILAAYHQYYAVNKAVDRALLASS-------  289

Query  306   DWNTLGIQHESPESYGLPGVKKQPVGDRKGGVIWHTQGSGKSLSMVFYAGKIVLAMDNPT  365
                                      GD KGGVIWHTQGSGKSL+MVF++GK++  ++NPT
Sbjct  290   -----------------------GQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPT  326

Query  366   IVVITDRNDLDDQLFDTFA-----ASKQLLRQEPVQAENRNHLKELLNVVSGGIVFTTIQ  420
             +V++TDRNDLD+QL+ TF      ++K LLRQ P QAE R++LK LL+V SGGIVFTT+Q
Sbjct  327   LVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQ  386

Query  421   KFQPEEGN-VYPQLSDRENIIVIADEAHRTQYGFRAKHVDVKDEQGNVIGKKIVYGFAKY  479
             KF+PE+ + + + L++R N+IV+ADEAHRTQYGF AK     D++G+ I     YG+AKY
Sbjct  387   KFEPEQNETIMAALTERKNVIVMADEAHRTQYGFNAKY----DDKGEGIK----YGYAKY  438

Query  480   TRDALPNATFLGFTGTPIEKTDVNTPAVFGNYVDIYDISQSIEDGATVKIYYESRLAKVA  539
              RDALPNATF+GFTGTP+  TD NT  VFGNY+D+YD++Q++ DG+TVKIYYESR+  + 
Sbjct  439   LRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLN  498

Query  540   LSSEGkklvaeldeeldkedlaeTQKIKAKWTQLEALIGSEARIKQIAQDIVTHFGQRQE  599
             L+ ++  L    ++  + ++    Q++K+KW+++EAL G+ +R+  +A+DI+ HF  RQ+
Sbjct  499   LP-QSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQ  557

Query  600   VFEGKGMIVTMSRRIAADLYEEMIRVKPQWHSDDLRKGAIKVVMTSASSDGPRISKHHTT  659
                GKGMIVTMSRRIA DLY+E+IR+KP+WHSDD  KG IKVVMT++SSD   + +H   
Sbjct  558   AMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGP  617

Query  660   KDQRRVLAERMKDPEDELQLVIVRDMWLTGFDVPCLHTMYIDKPMKGHTLMQAIARVNRV  719
             K +R VL  RMKD +DELQLVIVRDMWLTGFDVP +HTMYIDKPMKGH LMQAIARVNRV
Sbjct  618   KKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRV  677

Query  720   YKDKPGSLIVDYLGIASDLKEALSFYSDSGGKGDPAVLQEKAVQLMLEKLEIVSQMFHGF  779
             +KDKPG+LIVDY+GIA  LKEAL  Y++S ++++ A+  +KAV+LML K +++ +M+  +
Sbjct  678   FKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNL  736

Query  780   AFEDYFEADTSRKLSIILEAEEHILGL-ENGKKRYIDEVTALSKTFSLAIPHEQAMDVKD  838
              +  +     S +   I ++ + ++GL E+ ++R+I  VT L+K+F+L   +  A +++D
Sbjct  737   DYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELND  796

Query  839   EISFYQAVKARLVKF----DSTGIGKTDEEIETAIRQVIDKALVTERVIDVFDAAGIKKP  894
             EI+F++AVKA LVK+          KT  E+E+ I Q++ +++VTE VIDV+++ G+ +P
Sbjct  797   EIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQP  856

Query  895   DISILSEDFLAEVRNMEHKNLAMEVLKKLLNDEIRARTKKNLVQSRSLMEMLENSIVRYH  954
             D+SILS+DFL +V  + +KN+A+E+L++LL++++++  K N   S+ + EML NSI +Y+
Sbjct  857   DLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYN  916

Query  955   NKVLTAAEVIEELIKLSKEIKRMDKEPQEMGLSEFEYAFYTAIADNESAREVMQKEQLRE  1014
             ++ + ++ VIEELI+L+K+IK+ ++  +E+GL+  E AFY A+  +E+A+  M+  +LR 
Sbjct  917   SRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRA  976

Query  1015  LAVVLFEKVKQNASIDWTIKESVRAKLKVIVKRTLRQYGYPPDMQALATETVLRQAELIA  1074
             +A  L   VK+N S+DW+ ++S +AK++V V+R L++YGYPPD+Q +A E V+ QAEL+A
Sbjct  977   IAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMA  1036

Query  1075  DE  1076
              +
Sbjct  1037  SN  1038

37) Spica_2695 in NC_015732


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  862 bits (3266),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 502/1078 (47%), Positives = 776/1078 (72%), Gaps = 55/1078 (5%)

Query  5     NLTESAIEDLAIKLFKSLGYHHLYGPDSAPEGKHPERSSFEDVILVNRLRDAVKKINPHI  64
             ++ E  +E++ +  + SL+Y+   G + +  G  PER S  DV+L +RL  A++KIN++I
Sbjct  4     QFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDI  63

Query  65    PQQSLDDAIRQVLRFPSQELIANNQSFHRLLTEGVKI-SYHKDGSERGDLVWLIDFKHPE  123
               + ++ AI+++    S +L+ NN +FH  L +G+ I  Y+ +G    ++V ++DF HP+
Sbjct  64    HPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQ  123

Query  124   NNEFVVVNQFAVIENHQNKRPDVVLFVNGLPLVVIELKNAADENATIQSAYNQIQTYKQA  183
             NN+F+ VNQF+V++ +  KRPD+VLF+NGLP+VVIELKN+++E   ++ +Y+Q++TYK  
Sbjct  124   NNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  184   IPGFFTYNEIIVISDGLEARSGSLSAGLDRFVAWKSVDGRIEASSLESQLTTLIKGMLTP  243
             IP +FT+NE++V SDG+++++GSL+A  DRF++W+S DG  E+SS  + L  LI+GML P
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNP  243

Query  244   LTLIDIIRHFIVYEASKHEDPETGLTVIRTVKKIAAYHQYYAVNRAVASTIRAAGYEQAA  303
              TL+D+IR F++++              +  K +AAYHQYYAVN+AV  ++         
Sbjct  244   KTLLDLIRYFVLFQDDGKG---------HISKILAAYHQYYAVNKAVDRAL---------  285

Query  304   QLPVAAPWPASLKEDPEAYGLPSVREQPVHDKKAGVIWHTQGSGKSLSMVFYTGKVVLTL  363
              L+ ++                        D K+GVIWHTQGSGKSL+MVF++GK++  L
Sbjct  286   -LASSGQ----------------------GDGKGGVIWHTQGSGKSLTMVFFSGKLIQML  322

Query  364   DNPTVVVITDRNDLDDQLFTTFA-----ASKQLLRQEPVQAESRDHLKQLLRVASGGIVF  418
             +NPT+V++TDRNDLD+QL++TF      ++K LLRQ P QAE+R +LK LL V SGGIVF
Sbjct  323   NNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVF  382

Query  419   TTIQKFQPDEGN-VYDVLSNRNNIIVIVDEAHRTQYGFQAKVDANTGAITYGFAKYLRDA  477
             TT+QKF+P++ + +   L++R+N+IV+ DEAHRTQYGF+AK D +  +I YG+AKYLRDA
Sbjct  383   TTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDA  442

Query  478   LPNATYIGFTGTPIEKTDRNTPAVFGNYIDIYDIAQAVADGTTVRIFYESRLAKIALSDE  537
             LPNAT++GFTGTP+  TD+NT  VFGNYID+YD++QAVADG+TV+I+YESR+  + L+ +
Sbjct  443   LPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLP-Q  501

Query  538   GKKlvqeldeellqdeMPEAQKAKAKWTQLEALVGSQERLKQIANDIVTHFEARQEVFEG  597
             +  L +  ++   ++E    Q+ K+KW+++EAL G++ R+  +A+DI+ HFE+RQ+   G
Sbjct  502   SLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKG  561

Query  598   KGLIVTMSRRIAAALYDEIIHIRPAWHSDDLKKGAIKVVMTSASSDGPEIAKHYTSKEDR  657
             KG+IVTMSRRIA  LYDEII+++P WHSDD  KG IKVVMT++SSD   + +H  +K  R
Sbjct  562   KGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRR  621

Query  658   RLLAERMKDPQDELKLVIVRDMWLTGFDVPCLHTMYIDKPMKGHTLMQAIARVNRVYKDK  717
              +L  RMKD +DEL+LVIVRDMWLTGFDVP +HTMYIDKPMKGH LMQAIARVNRV+KDK
Sbjct  622   SVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDK  681

Query  718   PGGLIVDYLGIAADLKEALSFYADNGGKGDPALLQEEAVRLMLEKYEIVTDLLHGFAYKH  777
             PGGLIVDY+GIA  LKEAL  Y++ +++++ A+  + AV LML KY+++ D+L  + Y  
Sbjct  682   PGGLIVDYVGIAESLKEALKEYTE-SDQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSK  740

Query  778   YCTADTAAKLSIILEAEEFILGL-ENGRKRYIDEVTALSKAFAIAIPDEQALAIKDEVAF  836
             + +   + +   I ++ ++++GL E+ R+R+I  VT L+KAFA+   +  A  ++DE+AF
Sbjct  741   FNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAF  800

Query  837   FQAVKSRLVKF----AGTSGGKTNEEIETAIRQVIDKALVTGEVIDVFDAAGIKKPDISI  892
             F+AVK+ LVK+          KT  E+E+ I Q++ +++VT +VIDV+++ G+ +PD+SI
Sbjct  801   FKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSI  860

Query  893   LSEEFLLEVKNMKHKNIAMEVLKKILNDEIKARTRTNLVQSKSLLELLENAIKRYQNQVL  952
             LS++FL +V  +K+KN+A+E+L+++L++++K+  +TN   SK + E+L N+I++Y+++ +
Sbjct  861   LSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSI  920

Query  953   TAAQLIEELIDLAKDIKKMDEEPEAMGLSEFEYAFYSAVANNESARELMGKDKLRELAVA  1012
              ++++IEELI+LAKDIK+ ++  + +GL+  E AFY A+ ++E+A+  M   KLR +A  
Sbjct  921   ETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHE  980

Query  1013  LYEQVRQNASIDWTIKESVRSKLKVAVKRTLKRYGYPLDMEALATETVLKQAELIADE  1070
             L   V++N S+DW+ ++S ++K++VAV+R LK+YGYP D++ +A E V+ QAEL+A +
Sbjct  981   LTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

38) LRI_1098 in NC_021494


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  861 bits (3259),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 507/1047 (49%), Positives = 768/1047 (74%), Gaps = 25/1047 (2%)

Query  6     NEENIEGIALRCLDEVGYQVYKSASYTSPNVEIDAERNNDHTQPILKGQLENALRKLNPG  65
             NE+++E + L  L+ ++Y+ YK ++   +   + +ER++D  + +L  +LE+ALRK+N++
Sbjct  6     NEDDLEQVVLEWLESLSYD-YKKGN-EISMTGLAPERKSD-KDVVLHERLEKALRKINSD  62

Query  66    LDDEVYRNAIHQFEMLADSPDMMLNNHKLHELIIGGAKVKTSIKGEDRTITLYPI-DFKN  124
             ++     +AIH++  L  SP+++ NN  +HE +I G  +       +  + +  I DF +
Sbjct  63    IHPRFIEKAIHELT-LEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEH  121

Query  125   VDSNTFVATNQFTMKQGEHERRPDITLFINGLPLVTFELKNPANANVGIQQAFAQFSTYK  184
              ++N F+A NQFT+ +G+  +RPDI LFINGLP+V +ELKN++N  VG+++++ Q+ TYK
Sbjct  122   PQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYK  181

Query  185   EEISSYMQYNEILIVSDGINARAGSLTAGIDRFMRWREPK-NVDIDDSMMELEVLIKYML  243
               I+    +NE+L+ SDGIN++AGSLTA  DRFM WR    + +   S+  L+VLI+ ML
Sbjct  182   MRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGML  241

Query  244   TPSDLLNIIQNFILFESDGDKTI-KILAAYHQYYMVNKAVKRTSKVLADPDDKRIGVVWH  302
              P  LL++I+ F+LF+ DG   I KILAAYHQYY VNKAV R+    ++ +D + GV+WH
Sbjct  242   NPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWH  301

Query  303   TTGSGKSLSMVFYSGIVARKLGNPTILVINDRNDLDDQLFGTFA-----AAHEYLQQNPD  357
             T GSGKSL+MVF+SG + + L NPT++++ DRNDLD+QL++TF      ++   L+Q P 
Sbjct  302   TQGSGKSLTMVFFSGKLIQMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPK  361

Query  358   HAESRGEVRKYMSKNSGGIVFSTIQKFSPNFDAGEEHMPILTNRSNVIVIVDEAHRSQYG  417
             +AE+R E++  +S +SGGIVF+T+QKF P  +  E  M+ LT+R NVIV+ DEAHR+QYG
Sbjct  362   QAETRKELKSLLSVESGGIVFTTMQKFEP--EQNETIMAALTERKNVIVMADEAHRTQYG  419

Query  418   MQAKLTD--NGIRYGYAKYLREALPNASFIGFTGTPINTEDKSTVAMFGNYIDVYDITQA  475
              +AK  D  +GI+YGYAKYLR+ALPNA+F+GFTGTP+ + DK+T  +FGNYIDVYD+TQA
Sbjct  420   FNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQA  479

Query  476   VNDHATVRIYYESHVFPLKLKDN-AIDE-YQKLIKEAGINDDPNLRETERRNRAFTRLEA  533
             V D +TV+IYYES+V+PL+L ++  +DE Y+      +I +D +    +R +   +R+EA
Sbjct  480   VADGSTVKIYYESRVIPLNLPQSLDLDEAYN------DITEDQEEDVKQRLKSKWSRIEA  533

Query  534   LAGAKPRLEKIAQHFVHHFESRQKEEFGKSMIVEMSRQNAVKLYNEIAKLRPEWINDDIH  593
             LAGAKPR+E +A+++++HFE+RQ+   GK+MIV MSR+ AV LY+EI +L+PEW +DD +
Sbjct  534   LAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDD  593

Query  594   KGKIKVIMTSNASDGPEFAKFKTSKQDRFTLQQRMKDNDDELQIVIVVDMWLTGFDVPSM  653
             KG IKV+MT+++SD   F +   +K+ R  L++RMKD +DELQ+VIV DMWLTGFDVPSM
Sbjct  594   KGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSM  653

Query  654   NTMYIDKPMQGHNLIQAIARVNRVFKNKDSGLIVDYIGIADALRFALNVYTKDDQGKVGI  713
             +TMYIDKPM+GHNL+QAIARVNRVFK+K +GLIVDY+GIA++L+ AL+ YT  DQ++ +I
Sbjct  654   HTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAI  713

Query  714   NVDRALMLLKEKYDIIKEDFLYGIDYSEFDSDDSQTRQKAVTRVVNELAAEDDETKQKFF  773
             + D+A+ L+  KYD+I +D LY +DYS F+S+    R  +++  ++ + + +++ +Q+F+
Sbjct  714   DTDKAVELMLLKYDVI-QDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFI  772

Query  774   DVVTELQKAYALVSTQPEAQDLSAEIAFFKTVKVFLTKLEAPDDPDDSKEIHSSVDYRMQ  833
               VTEL KA+AL +T+P AQ+L+ EIAFFK+VK  L KL  P   + ++   + V+  ++
Sbjct  773   KTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEIN  832

Query  834   QLLDQSIISEPNVDIYRDLGLERPNLDLISEQFLEKVNEITEKDLAITLLEKLLKGQVKA  893
             QL+ QS+++E  +D+Y+ LGLE+P+L ++S++FL  V+ + +K++A+ LL++LLKGQVK+
Sbjct  833   QLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKS  892

Query  894   YQKTNIVKGKKFEELLQESIDDYNKRGITSEIVIRKLIDMAKEINKEQQEGKNLGLSKEE  953
               KTN   +K+F E+L +SI+ YN R+I +  VI  LI++AK+I++EQQ G++LGL+ +E
Sbjct  893   LMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDE  952

Query  954   VAFYDALADHEKAVQELGEEKLHLIAAELVKTVKQQSGVDWERRSNVRAKMRVAVKHLLR  1013
             +AFYDAL  HE A + + + KL+ IA EL KTVK++ +VDW +R + +AKMRVAV++LL+
Sbjct  953   IAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLK  1012

Query  1014  KYGYPPDIAPDAIKTVVKQAEQMASQE  1040
             KYGYPPD+   A+  VV QAE MAS++
Sbjct  1013  KYGYPPDLQKMAVEQVVEQAELMASNQ  1039

39) hsdR in NC_021499


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  860 bits (3257),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 494/1055 (47%), Positives = 765/1055 (73%), Gaps = 34/1055 (3%)

Query  1     MAF-LSEAAVEQALLDQLRALDYSIEREEDIGPDGHRPERESHDEVVLKKRFEDAVARLN  59
             M F ++E  +EQ +L+ L +L Y   + ++I+  G  PER S+ +VVL  R+E A+ ++N
Sbjct  1     MNFQFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKIN  60

Query  60    PGLPLEARQDAVRRVMQSELPSLLEENRRIHKLMTEGVDVEYYADDGTLAAGKVVLIDFE  119
             +++     + A++ +     P+LLE+N  +H  + +G+++E Y D+G      V ++DFE
Sbjct  61    SDIHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFE  120

Query  120   HPGQNDWLAVSQFVVINGQNNRRPDVVVFVNGLPLGVIELKAPGSAGAHLLGAFNQLQTY  179
             HP +ND LAV+QF V+NG+  +RPD+V+F+NGLP+ VIELK + +    + ++++QL+TY
Sbjct  121   HPQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  180   KKQIPALFNTNVLLVTSDGIAARVGSLSADLERFMPWRTTDGTAVAPKGAPELSTLIEGV  239
             K +IP LF  N +LVTSDGI ++ GSL+A+ +RFM WR+ DG + ++ + + L  LI+G+
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGM  240

Query  240   FEHRRLLDVLCHFTVFGETGSG-LAKIIAGYHQFHAVRHAVNSTVTASSPEGNQRVGVIW  298
             ++ + LLD++  F +F + G G ++KI+A+YHQ+ AV  AV+ ++ ASS +G+ + GVIW
Sbjct  241   LNPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIW  300

Query  299   HTQGSGKSLLMAFYAGQLVKHPEMANPTLVVLTDRNDLDDQLFSTFSMCRD-----LIRQ  353
             HTQGSGKSL M F++G+L++   + NPTLV++TDRNDLD+QL+STF   ++     L+RQ
Sbjct  301   HTQGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQ  358

Query  354   TPVQAESREDLQKVLNRASGGVIFTTLQKFG-----EIDEPLTRRRNVVVIADEAHRSQY  408
             TP QAE+R +L+ +L+  SGG++FTT+QKF       I  +LT R+NV+V+ADEAHR+QY
Sbjct  359   TPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQY  418

Query  409   GFKAKVDAKTGEISYGFAKYMRDALPKASFIGFTGTPIEADDVNTPQVFGDYIDVYDISR  468
             GF+AK D K   I YG+AKY+RDALP+A+F+GFTGTP+ + D NT  VFG+YIDVYD+++
Sbjct  419   GFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQ  478

Query  469   AVEDGATVPIYYESRLARIELDEDEKPKIDAEVDDLTEEDSEADQERFKKKWSTVEALVG  528
             AV DG+TV IYYESR+  ++L +     +D   +D+TE++ E  ++R+K KWS +EAL G
Sbjct  479   AVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAG  536

Query  529   SDKRLALVARDMVAHFEDRVAALDGKAMVVCMSRRICVKLYDEIVKLRPDWHSDDDNAGA  588
             +  R+  +A+D++ HFE R  A+ GK+M+V MSRRI V LYDEI++L+P+WHSDDD+ G 
Sbjct  537   AKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGV  596

Query  589   VKIVMTGAASDPQEWQKHIGNkarrdllakrardPKDALKLVIVRDMWLTGFDAPCMHTM  648
             +K+VMTG++SDP   Q+HIG K RR +L KR +D +D L+LVIVRDMWLTGFD P MHTM
Sbjct  597   IKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTM  656

Query  649   YVDKPMQGHGLMQAIARVNRVFRDKPAGLIVDYIGIAQNLKSALQQYSKNDQENTGVDEA  708
             Y+DKPM+GH LMQAIARVNRVF+DKP+GLIVDY+GIA++LK AL++Y+ +DQ +T++D  
Sbjct  657   YIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTD  716

Query  709   QAIAVMMEKFEVVRDMYHGFDYVSALKGTPQERLAMMAGAIEWILDLQQKLAEKETTKEG  768
             +A+ +M+ K++V++DM   +DY         ER   ++ +++ +++L +           
Sbjct  717   KAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGE-----------  765

Query  769   KKNAHRRYQDavlalskafalasasDEARDIREEVGFFQAIRAALVK-----SSTGSGVT  823
               + ++R+  +V  L+KAFAL ++   A+++ +E++FF+A++A+LVK         +  T
Sbjct  766   --DERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKT  823

Query  824   QQERELAIQQIVSRAVVSTEIVDILAAAGIKSPDISILSDEFLAEVQQMEKKNLALEALR  883
               E E  I+Q+VS++VV+ +++D+  + G+  PD+SILSD+FL +V+ + +KN+A+E L 
Sbjct  824   PAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLN  883

Query  884   KLINDGIRSRSKANVVQTKAFSERLEDAVARYHANAITTAEVLQELIQLAKDIRAARQRG  943
             +L+++ ++S  K+N   +K FSE L +++ +Y++ +I T+ V++ELIQLAKDI+  +QRG
Sbjct  884   RLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRG  943

Query  944   EESGLSDEEIAFYDALAENESAVQMMGDDALRLIAHELLVSLRENVSVDWAHRDSARARM  1003
             +E GL+ +EIAFYDAL  +E+A + M D  LR IAHEL  +++EN+SVDW+ RDSA+A+M
Sbjct  944   NELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKM  1003

Query  1004  RVLVKRILRKYGFPPDLQDSAVQTVLQQAEALSSG  1038
             RV V+R+L+KYG+PPDLQ  AV+ V++QAE ++S 
Sbjct  1004  RVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

40) Cyan7425_3142 in NC_011884


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  855 bits (3236),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 499/1052 (48%), Positives = 778/1052 (74%), Gaps = 35/1052 (3%)

Query  6     TEDQIEAYNLELLDALGYSYKHGSTIEPEGAAPERQSFGDVLLKDRLNEVIGRINSHIPP  65
              ED++E   LE L++L+Y YK G+ I   G APER+S  DV+L +RL+  + +INS+I P
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  66    EIRQQAQRELQNIASPDLISNNEAFHRYLTEGITVE-YTKNGEIKGEQLWLIDWDNPDNN  124
              + ++A +EL    SP+L+ NN +FH  L +GI +E Y  +G+   E + ++D ++P+NN
Sbjct  66    RFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNN  125

Query  125   EFLAVNQFTVIEDNHNRRPDIILFINGLPLVVIElknaadakanlqaaHNQLQTYKREIP  184
             +FLAVNQFTV++++  +RPDI+LFINGLP+VVIELKN+++    ++ + +QL+TYK  IP
Sbjct  126   DFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  185   SLFTYNALLVISDGISARAGSLSAPYSRFSQWKRKLPNGEIDNNPDTNELEILTQGMLNK  244
              LFT+N +LV SDGI+++AGSL+A Y RF  W+ K  +GE ++++    L++L +GMLN 
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSK--DGETESSSSLASLDVLINGMLNP  243

Query  245   ATLLDLIRHFTVFEKVKIVDPNTEVVTLQTIKKLAAYHQYYAVNLAVESVI--AATRSNY  302
              TLLDLIR F +F+     D + ++  +     LAAYHQYYAVN AV+  +  ++ +++ 
Sbjct  244   KTLLDLIRYFVLFQD----DGKGHISKI-----LAAYHQYYAVNKAVDRALLASSGQGDG  294

Query  303   RGGVVWHTQGSGKSLSMVFLSGKLVLALDNPTIVVLTDRNDLDDQLFDTFAGCRQ-----  357
             +GGV+WHTQGSGKSL+MVF+SGKL+  L+NPT+V++TDRNDLD+QL+ TF   +      
Sbjct  295   KGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKG  354

Query  358   LLRQDPQQADNRDAVRELLNVASGGIIFTTVQKFAPVEGETLYPKISDRTNIVVLADEAH  417
             LLRQ P+QA+ R  ++ LL+V SGGI+FTT+QKF P + ET+ + +++R N++V+ADEAH
Sbjct  355   LLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAH  414

Query  418   RSQYGFKAKQVNIKDEQGNVVGKQTRYGFAKYIRDALPKATFVGFTGTPVEQTDKNTPQV  477
             R+QYGF+AK     D++G+ +    +YG+AKY+RDALP+ATFVGFTGTPV  TDKNT  V
Sbjct  415   RTQYGFNAKY----DDKGEGI----KYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMV  466

Query  478   FGSYIDVYDIAQAVEDGATVPIYYESRLVKVdldehgrelldeldedlsfedlGSTQQAK  537
             FG+YIDVYD++QAV DG+TV IYYESR++ ++L +         D     E+ +  Q+ K
Sbjct  467   FGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEE-DVKQRLK  525

Query  538   ARQTQLEAIVGSTQRLETIAQDIITHFEKRQTANRGKGMIVTLSRQIAANLYDNIIKLRP  597
             ++ +++EA+ G+  R+E++A+DII HFE RQ A +GKGMIVT+SR+IA +LYD+II+L+P
Sbjct  526   SKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKP  585

Query  598   GWHSDDLNSGKIKVVMTASASDAGNLVAHHTSKKDRQVLAQRLKDPDNDLELVIVCDMWL  657
              WHSDD + G IKVVMT+S+SD+ ++  H  +KK R VL +R+KD +++L+LVIV DMWL
Sbjct  586   EWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWL  645

Query  658   TGFDAPCLHTMYIDKPMKGHNLMQAIARINRVYFEKQGGLIVDYLGVAQELKNALSFYSQ  717
             TGFD P +HTMYIDKPMKGHNLMQAIAR+NRV+ +K GGLIVDY+G+A+ LK+AL  Y++
Sbjct  646   TGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTE  705

Query  718   SGGKGDLTVDQDVAIGLLLRTLEVVEGIMAEFNYQPYFTASTGDKLNILKSATNYVA--D  775
             S ++++ ++D D A+ L+L   +V+++++ +++Y  + +   +++   + ++ +YV   +
Sbjct  706   S-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLG  764

Query  776   PQIKDRFLDAVTALSKSYALIAHHPEAIAQAEKISFFQAIQASLRKL--EPSDGSL--SN  831
              + ++RF+ +VT L+K++AL A +P A    + I+FF+A++A+L KL   P +G    + 
Sbjct  765   EDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTP  824

Query  832   ADIETAIRQVVDQALVSDTVINIFDEAGIKSPDVSVISDEFLADVEGMEHKNLAVELLKR  891
             A++E+ I Q+V Q++V++ VI++++  G+  PD+S++SD+FL DVEG+ +KN+AVELL+R
Sbjct  825   AEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNR  884

Query  892   LLRDEVKAQRRTNLVRSRQLAEMLEESLRRYQNQVISVTEVIQELISLSKDVQAAKQRGE  951
             LL+++VK+  +TN   S++++EML +S+ +Y+++ I  + VI+ELI L+KD++  +QRG+
Sbjct  885   LLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGN  944

Query  952   ELGLEPYELAFYDALSQNQSAREVMGQDKLRELAITLVVRIRKNATIDWNLKESVRARMK  1011
             ELGL++ E+AFYDAL  +++A+  M + KLR +A  L   ++ N ++DW+ ++S +A+M+
Sbjct  945   ELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMR  1004

Query  1012  VMVKRLLREYGYPPDMQALAIELVLEQAKVFT  1043
             V V+RLL+ YGYPPD+Q +A+E V+EQA + +
Sbjct  1005  VAVRRLLKKYGYPPDLQKMAVEQVVEQAELMA  1036

41) MROS_1287 in NC_018178


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  855 bits (3236),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 511/1087 (48%), Positives = 777/1087 (72%), Gaps = 65/1087 (5%)

Query  7     ESDIEQFTIELLENLGYEYVSPASISPDGDQPERQTFDDVLLINKLKNAVDRIIPTIPAE  66
             E D+EQ  +E LE+L+Y+Y     IS  G  PER++  DV+L ++L +A+ +I + I + 
Sbjct  7     EDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHPR  66

Query  67    AKEDAIKQILRISSPDLITNNETFHRMLTEGINV-TYSKDGNQRGDLVWLIDFKNPENNE  125
               E AI ++    SP+L+ NN TFH  L +GI++  Y  +G+   ++V ++DF +P+NN+
Sbjct  67    FIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNND  126

Query  126   FtvvnqftvtstssvtgtvIKRPDVILFVNGIPLVVIELKNAVDEEATIKSAFKQIQTYK  185
             F  VNQFTV +         KRPD++LF+NG+P+VVIELKN+ +E   +  ++ Q++TYK
Sbjct  127   FLAVNQFTVVNGDY-----TKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYK  181

Query  186   QTIPQLFTYNGFAVISDGLEARAGTISSDFSRFMAWKSVDGTKEASHLVSQLEILIKGML  245
               IPQLFT+N   V SDG++++AG++++++ RFM+W+S DG  E+S  ++ L++LI+GML
Sbjct  182   MRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGML  241

Query  246   NKNTLLDLIRHFIVFEKSKKEDPDSNLTFIQTTKKLAGYHQYFAVNKAIERTLQAASGNG  305
             N +TLLDLIR F++F+   K          + +K LA+YHQY+AVNKA++R+L A+SG+G
Sbjct  242   NPKTLLDLIRYFVLFQDDGKG---------HISKILAAYHQYYAVNKAVDRALLASSGQG  292

Query  306   NRKGGVIWHTQGSGKSLTMVFYAGKIVLQLDNPTILVITDRNDLDDQLFDTFA-----DS  360
             + KGGVIWHTQGSGKSLTMVF++GK++  L+NPT++++TDRNDLD+QL+ TF       +
Sbjct  293   DGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSG  352

Query  361   KQLLRQEPVQAENREHLKELLKVSSGGIVFTTIQKFQSDTSTGSVSDSKYEQLSERTNIV  420
             K LLRQ P QAE R +LK LL V SGGIVFTT+QKF+++ +   ++      L+ER N++
Sbjct  353   KGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAA-----LTERKNVI  407

Query  421   VIADEAHRTQYGFKARTIDERDENGNHIGKKTVYGFAKYLRDALPNATFIGFTGTPIEKT  480
             V+ADEAHRTQYGF+A+     D++G+ I     YG+AKYLRDALPNATF+GFTGTP+  T
Sbjct  408   VMADEAHRTQYGFNAKY----DDKGEGIK----YGYAKYLRDALPNATFVGFTGTPVAST  459

Query  481   DKNTPAVFGDYVDIYDIAQAVEDGATVRIFYEGRLAKINLSEEGKKLIKELDAELESEDI  540
             DKNT  VFG+Y+D+YD++QAV DG+TV+I+YE+R+  +NL++ +  L    +   E ++ 
Sbjct  460   DKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQ-SLDLDEAYNDITEDQEE  518

Query  541   TSTQRAKAKWTQLEALVGSEDRFKQIAADIIYHYEERQKVFEGKAMIVAMSRRIAVKLYD  600
                QR K+KW+++EAL G+  R   +A DII H+E RQ+   GK+MIV+MSRRIAV LYD
Sbjct  519   DVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYD  578

Query  601   EIIKLRPDWHNEDLKKGKIKVVMTAASSDGPELAKHHTTKDQRRVLADRMKNPDDELKIV  660
             EII+L+P+WH++D  KG IKVVMT++SSD   + +H   K +R VL  RMK+ +DEL++V
Sbjct  579   EIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLV  638

Query  661   IVRDMWLTGFDVPCLHTLYIDKPMQGHTLMQAIARVNRVYKDKPGGLIVDYLGIASDLKQ  720
             IVRDMWLTGFDVP +HT+YIDKPM+GH LMQAIARVNRV+KDKPGGLIVDY+GIA  LK+
Sbjct  639   IVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKE  698

Query  721   ALSFYSDSGGKGDPAIAQEKAVQLMLEKLEIVSRMFLEKPVKPYSKDYEELVKDPSVPYL  780
             AL  Y++S ++++ AI  +KAV+LML K +++  M+       Y+ DY  +  +      
Sbjct  699   ALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDML-------YNLDYSKFNSEKKS---  747

Query  781   GKDKGLLYEQYFTADAKTKLDIILAAEEHILSLENGKKRFIDEVTALSKAFAIAIPHEQA  840
                     E+Y+T        I L+ +E        ++RFI  VT L+KAFA+   +  A
Sbjct  748   --------ERYYTISNTMDYVIGLGEDE--------RQRFIKTVTELGKAFALCATEPTA  791

Query  841   LDVKDEVAFFQAVKARLLK-FDSSSPG---KSSEEIETTIKQVIDKALVSDRVIDIFDAA  896
              +++DE+AFF+AVKA L+K ++++  G   K++ E+E+ I+Q++ +++V++ VID++++ 
Sbjct  792   QELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTL  851

Query  897   GIKKPDISILSEEFLMEVRNMQHKNIALETLRKLLNDEIKSRIRTNLVQGKTLMEMLEKS  956
             G+ +PD+SILS++FL +V  +++KN+A+E L +LL++++KS ++TN   +K + EML +S
Sbjct  852   GLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNS  911

Query  957   IKKYHSKILTAAEVIEELIALGKEIQNLDKEPKEMGLSDFEYAFYTAIANNDSAREVMKK  1016
             I+KY+S+ + ++ VIEELI L+K+I++ ++  +E+GL+  E AFY A+ ++++A+  M  
Sbjct  912   INKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMED  971

Query  1017  DKLRELAIVLYDRVRKNATIDWTLKESVKAKLKVIVKRTLRQYGYPPDMQKLATETVLKQ  1076
              KLR +A  L   V+ N ++DW+ ++S KAK++V V+R L++YGYPPD+QK+A E V+ Q
Sbjct  972   KKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQ  1031

Query  1077  AELIANE  1083
             AEL+A++
Sbjct  1032  AELMASN  1038

42) Mbur_1213 in NC_007955


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  852 bits (3226),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 510/1080 (48%), Positives = 775/1080 (72%), Gaps = 59/1080 (5%)

Query  2     TESAIEEFAIELLEHQGYQYIYAPDITPDSDTPERERFEDVLLSERLRKSIGRINPTIPA  61
              E  +E+  +E LE  +Y+Y  + +I+  + +PER    DV+L ERL K++ +IN+ I +
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62    DAREDAIRQIQRLNSPELIANNEAFHRMLTEGIKV-SYQKDGADRGDLVWLVDFNDPENN  120
                E AI+++   +SP+L+ NN +FH  L +GI +  Y+ +G    ++V +VDF++P+NN
Sbjct  66    RFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNN  125

Query  121   EFLVTNQFTVIENNVNKRPDIILFVNGLPLVVIELKNPADENATVRSAFRQLQTYKQAIS  180
             +FL  NQFTV++ +  KRPDI+LF+NGLP+VVIELKN+++E   V  +++QL+TYK  I+
Sbjct  126   DFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  181   SLFAYNGFMVISDGLEAKSGSLSAGFSRFMAWKSSDGTVEASPLIGQLETLINGMLNKTT  240
              LF++N  +V SDG+++K+GSL+A + RFM+W+S DG  E+S+ ++ L+ LINGMLN  T
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPKT  245

Query  241   LLDLVRHFIVFEKSKKEDRTTGIITIQTVKKLATYHQYYAVNRAVESTLRASGYAAAKDW  300
             LLDL+R F++F+   K          +  K LA+YHQYYAVN+AV+ +L           
Sbjct  246   LLDLIRYFVLFQDDGKG---------HISKILAAYHQYYAVNKAVDRAL-----------  285

Query  301   QIFGLHHESPESYGLPGVTEQPIGDRKGGVVWHTQGSGKSLSMVFYTGKIVLAMDNPTVV  360
                           L++  +   GD KGGV+WHTQGSGKSL+MVF++GK++  ++NPT+V
Sbjct  286   --------------LASSGQ---GDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLV  328

Query  361   VITDRNDLDDQLFDTFA-----ASKQLLRQEPVQAENRGHLKELLNVASGGVVFTTIQKF  415
             ++TDRNDLD+QL+ TF      ++K LLRQ P QAE R +LK LL+V SGG+VFTT+QKF
Sbjct  329   IVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKF  388

Query  416   QPEEGN-VYPKLSDRRNIIVIADEAHRTQYGFKAKTIDIKDEQGNVIGQKIVYGFAKYTR  474
             +PE+ + + + L++R+N+IV+ADEAHRTQYGF+AK     D++G+ I     YG+AKY R
Sbjct  389   EPEQNETIMAALTERKNVIVMADEAHRTQYGFNAKY----DDKGEGIK----YGYAKYLR  440

Query  475   DALPNATYLGFTGTPIEKTDVNTPAVFGNYVDIYDISQAVEDGATVKIYYESRLAKIILS  534
             DALPNAT++GFTGTP+  TD NT  VFGNY+D+YD++QAV DG+TVKIYYESR+  + L+
Sbjct  441   DALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLP  500

Query  535   KEGKKLVSELDEELEKENLAETQKAKAKWTQLEALIGSEGRIRQIAQDIVTHFEQRKEVF  594
              ++  L    ++  E ++    Q+ K+KW+++EAL G+  R+  +A+DI+ HFE R++  
Sbjct  501   -QSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAM  559

Query  595   EGKGMIVAMSRRIAADLYDEIIKIKPQWHNDDFKKGEIKIVMTSASSDGPKISKHHTTKE  654
              GKGMIV+MSRRIA DLYDEII++KP+WH+DD  KG IK+VMT++SSD   + +H   K 
Sbjct  560   KGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKK  619

Query  655   QRRALAERMKDPEDELKLVIVRDMWLTGFDVPCLHTMYIDKPMKGHTLMQAIARVNRVYK  714
             +R  L  RMKD +DEL+LVIVRDMWLTGFDVP +HTMYIDKPMKGH LMQAIARVNRV+K
Sbjct  620   RRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFK  679

Query  715   DKPGSLVVDYLGIASDLKEALSFYSDSGGKGDPAVLQESAVQLMLEKLEIVSQMFHGFSY  774
             DKPG+L+VDY+GIA  LKEAL  Y++S ++++ A+  + AV+LML K +++ +M+  + Y
Sbjct  680   DKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDY  738

Query  775   EHYFAADTSTKLSIILAAEEHILGL-ENGKKRYIDEVTALSRAFSIAIPHEEAMDVKDEI  833
               + +   S +   I  + + ++GL E+ ++R+I  VT L++AF++   +  A +++DEI
Sbjct  739   SKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEI  798

Query  834   SFYQAIKARLVKF----DSTGTGKTDEEIETAIRQVIDQALVTEQVIDVFDAAGIKKPDI  889
             +F++A+KA LVK+        T KT  E+E+ I Q++ Q++VTE+VIDV+++ G+ +PD+
Sbjct  799   AFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDL  858

Query  890   SILSEDFLLEVQNMEHKNIALEVLKKLLNDEIKARVKKNLVQSKSLMEMLEDSIKKYHNK  949
             SILS+DFL +V+ + +KN+A+E+L++LL++++K+ +K N   SK + EML +SI+KY+++
Sbjct  859   SILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSR  918

Query  950   VITAAevieelielskeikRMDKEPLEMGLSEFEYAFYTAIADNDSARELMQKEKLRELA  1009
              I ++ VIEELI+L+K+IK+ ++   E+GL+  E AFY A+  +++A+  M+  KLR +A
Sbjct  919   SIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIA  978

Query  1010  VVLFDKIKQNASIDWTIKESVRAKLKVIVKRTLRQYGYPPDLQALATETVLKQAELITDE  1069
               L   +K+N S+DW+ ++S +AK++V V+R L++YGYPPDLQ +A E V+ QAEL++ +
Sbjct  979   HELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

43) Dacet_2560 in NC_013943


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  851 bits (3223),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 489/1045 (47%), Positives = 760/1045 (73%), Gaps = 39/1045 (3%)

Query  6     EDTLEYVLIDLFKELGYDYAFAPDFTMVDDDGGDYERISTDEVILTKRLKRKLMEINPEV  65
             ED LE V+++ +  L+YDY  + +++M +      ER S  +V+L  RL + L  IN+++
Sbjct  7     EDDLEQVVLEWLESLSYDYKKGNEISMTGLAP---ERKSDKDVVLHERLEKALRKINSDI  63

Query  66    GEEQIDEAIKKLSNPESVKLIDNNRAFHKYVTDGISIP-YHEDGETKTAIINLFDFKDIS  124
                 I+ AI  L+   S +L++NN +FH  + +GI I  Y+++G++   I+++ DF +  
Sbjct  64    HPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQ  123

Query  125   NNDWLVANQFTVTEAKEKRRPDVIVFVNGLPLAVIELKNPSDEKATMFDAFTQLQNYKNF  184
             NND L  NQFTV ++   +RPD+++F+NGLP+ VIELKN+++E   + D++ QL+ YK  
Sbjct  124   NNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  185   IPNLFNYNEILIASDGYSATAGSLTADWERFMPWKTVNGEKDPKG-MIQLEVLIRGMFDK  243
             IP+LF +NE+L++SDG ++ AGSLTA+ +RFM W++ +GE ++ + +  L+VLI GM++ 
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNP  243

Query  244   ERFLDIIRNFIVF-EVSDDKIIKKMAGYHQYHAVNKALSRTVEATSEKGDKRIGVVWHTQ  302
               +LD+IR F++F + + + I K +A+YHQY AVNKA+ R++ A+S +GD + GV+WHTQ
Sbjct  244   KTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQ  303

Query  303   GSGKSLSMVFYSGKVVQKLELSNPTLVVLTDRNDLDEQLFGNFSLCSD-----LLRQKPV  357
             GSGKSL+MVF+SGK++Q L+  NPTLV++TDRNDLD+QL++ F    +     LLRQ P 
Sbjct  304   GSGKSLTMVFFSGKLIQMLN--NPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPK  361

Query  358   QATSRAHLRELLNVASGGIVFTTIQKFFPKEDEDSHPELSPRRNIIVMADEAHRSQYDFI  417
             QA +R +L+ LL+V SGGIVFTT+QKF P ++E   + L+ R+N+IVMADEAHR+QY+F 
Sbjct  362   QAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFN  421

Query  418   D-----------GFARHMRDALPGAAFIGFTGTPIETSDKVTTSVFGSYIDIYDMEDAVN  466
                         G+A+ +RDALP A+F+GFTGTP+ ++DK T  VFG+YID+YDM +AV 
Sbjct  422   AKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVA  481

Query  467   DGATVRIYYEARLAKIDFDEVEKPKVDPEFEQVTEDQEKFEKQKLQAKWTALEALVGATS  526
             DG+TV+IYYE+R+  +++ +     +D  ++++TEDQE   KQ+L++KW+ +EAL GA +
Sbjct  482   DGSTVKIYYESRVIPLNLPQ--SLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKP  539

Query  527   RLELVAKDIVEHFEDRLSAMDGKAMVVCMSRRICVELYNEIAKLRPDWHDEDDKQGFIKI  586
             R+E +AKDI++HFE R  AM GK+M+V MSRRI V+LY+EI +L+P+WH +DD +G IK+
Sbjct  540   RVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKV  599

Query  587   IMSGSASDKEEWQPHIRTKQQREELANRFKKPDTDFKLVIVRDMWLTGFDAPCMHTMYVD  646
             +M+GS+SD    Q HI  K++R  L +R K  + +++LVIVRDMWLTGFD P MHTMY+D
Sbjct  600   VMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYID  659

Query  647   KPMGGHNLMQAIARVNRVFKDKPGGLVVDYIGIADDLKNAMRNYTASGGKGKSHHDKDEA  706
             KPM GHNLMQAIARVNRVFKDKPGGL+VDY+GIA+ LK+A+++YT S +++++  D D A
Sbjct  660   KPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDKA  718

Query  707   AAYMMEKFEQVIDLMHDFDYEAILHSKEKERLDGIYEAMEYVLSI--DRKMDFIKMVTEL  764
                M+ K++ + D++ ++DY  +   K  ER   I ++M+YV+++  D +  FIK VTEL
Sbjct  719   VELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTEL  778

Query  765   SRAFALAVPAPQTVEVRDYLALFQEIKAAIIKNTITP----EKKSPDELNTALKQLVSKA  820
             ++AFAL    P + E+ D +A+F+ +KA+++K    P     +K+P E+++ ++QLVS++
Sbjct  779   GKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQS  838

Query  821   VTANGVVDVFGAAGLDKPEISILSDEFLAEVKEYPYKNLAVEMLAKLLADEIKIKLKRNV  880
             V +++V+DV+ + GL++P++SILSD+FL +V     KN+AVE+L +LL +++K  +K N 
Sbjct  839   VVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNA  898

Query  881   VKSRSFIERLEESMKNYQNRSIEAAMVIQHLIDLAKEMRKEAERGNDLGLSDDEIAFYDA  940
               S+ F E L +S+++Y++RSIE++ VI++LI+LAK++++E +RGN+LGL+ DEIAFYDA
Sbjct  899   TVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDA  958

Query  941   LLTENAAFGERLLKEMGD-ELKVVAVELVQAVKKNVTIDWTKRDAVKAKLRVIVKRILRK  999
             L+++++A      K M D  L+ +A EL ++VK N+++DW+KRD+ KAK+RV V+R+L+K
Sbjct  959   LVSHETA-----KKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKK  1013

Query  1000  YGYPPEASDKATQTVLEQAAALCEE  1024
             YGYPP+    A + V+EQA  +  +
Sbjct  1014  YGYPPDLQKMAVEQVVEQAELMASN  1038

44) Xfasm12_2283 in NC_010513


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  849 bits (3214),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 488/1055 (47%), Positives = 763/1055 (73%), Gaps = 34/1055 (3%)

Query  1     MAF-LSEATLEQAVLDQLRLLGYSIEREENIGPDGYRPERASYDQVVLKQRFVDAVTRLN  59
             M F ++E  LEQ VL+ L  L+Y   + ++I+  G  PER S  +VVL +R+  A+ ++N
Sbjct  1     MNFQFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKIN  60

Query  60    PGLPPEARQDAIRKVTQSELPSLLEENRRIHRLITEGVDVEYYAQDGTLTAGNVALIDFD  119
             +++ P   + AI+ +T    P+LLE+N  +H  + +G+++E Y ++G      V ++DF+
Sbjct  61    SDIHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFE  120

Query  120   HPQQNDWLAVNQFVVIADHYNRRPDVVLFLNGLPLAVIELKAPGSINATLIAAFNQLQTY  179
             HPQ+ND LAVNQF V+ ++Y +RPD+VLF+NGLP+ VIELK + +    +  +++QL+TY
Sbjct  121   HPQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  180   KEQIPALFNTNALLVTSDGMTARFGSLSADLERFMPWRTTDGTDIAPKGVPELATLIEGI  239
             K +IP LF  N +LVTSDG+ ++ GSL+A+ +RFM WR+ DG   ++ +++ L  LI+G+
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGM  240

Query  240   FEPHRLLDLLRHFTVFRKTDAG-LAKIIAGYHQFHAVRQAINSTVAASSPQGNQQIGVIW  298
             ++P  LLDL+R F +F+  + G ++KI+A+YHQ+ AV +A++ ++ ASS QG+ + GVIW
Sbjct  241   LNPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIW  300

Query  299   HTQGSGKSLLMAFYAGQLVKHPAMANPTLVVLTDRNDLDDQLFTTFSQCGD-----LIRQ  353
             HTQGSGKSL M F++G+L+    + NPTLV++TDRNDLD+QL++TF +  +     L+RQ
Sbjct  301   HTQGSGKSLTMVFFSGKLI--QMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQ  358

Query  354   TPVQAQSRDQVRKLLNRASGGVIFTTLQKFG-----DITEPLTTRRNVVVIADEAHRSQY  408
             TP QA++R +++ LL+  SGG++FTT+QKF       I  +LT R+NV+V+ADEAHR+QY
Sbjct  359   TPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQY  418

Query  409   GFKAKVDNKTGKISYGFAKYMRDALPNASCIGFTGTPIEADDVNTPAVFGNYIDIYDISR  468
             GF+AK D+K   I YG+AKY+RDALPNA+ +GFTGTP+ + D NT  VFGNYID+YD+++
Sbjct  419   GFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQ  478

Query  469   AVEDGATVPIYYESRLARIALDEAEKPQIDAEVNALTEADSEAEQERFKKKWSTVETLVG  528
             AV DG+TV IYYESR+  I+L+ ++  ++D   N +TE + E  ++R+K KWS +E+L G
Sbjct  479   AVADGSTVKIYYESRV--IPLNLPQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAG  536

Query  529   SDKRLALIAKDIITHCEDRLAALDGKAMVVCMSRRICVALYDHIVTLRPDWHSTDNKAGS  588
             +  R+  +AKDII H E R  A+ GK+M+V MSRRI V LYD+I+ L+P+WHS D+  G 
Sbjct  537   AKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGV  596

Query  589   LKIVMTGTASDPQQWRQHIGNKarrdllaerardPKDPLKLVIVRDMWLTGFDAPCMHTM  648
             +K+VMTG++SDP   ++HIG K RR +L  R +D +D L+LVIVRDMWLTGFD P MHTM
Sbjct  597   IKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTM  656

Query  649   YLDKPMQGHGLMQAIARVNRVFRDKPAGLIVDYIGIAQNLRTALQQYSKNDQQHTGVDEA  708
             Y+DKPM+GH LMQAIARVNRVF+DKP+GLIVDY+GIA++L+ AL++Y+ +DQ +T++D  
Sbjct  657   YIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTD  716

Query  709   QAIAVMMEKYQIVRDMYHGYDYLTAMSGTPQERLAMMGGAIEWILNlqqqlaataqtKEG  768
             +A+ +M+ KY++++DM    DY    S    ER   ++ +++ ++ L             
Sbjct  717   KAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLG------------  764

Query  769   KKEAHRRYQDavlalskafalasasDEARHIREEVGFFQAIRAALVKSADHSGGSEPQR-  827
               + ++R+  +V  L+KAFAL ++   A+++ +E++FF+A++A+LVK  + +  +  ++ 
Sbjct  765   -EDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKT  823

Query  828   ----DLAIQQIVSRAVVSTEIVDILAASGINSPDISILSDAFLAEIQQMQRKHLALEALR  883
                 +  I+Q+VS++VV+ +++D+  + G++ PD+SILSD FL +++ +++K++A+E L 
Sbjct  824   PAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLN  883

Query  884   KLLNDRIRSRSTANLVQTKAFSERLEGAVARYHANAITTAQVLQELIQLAKDIRAARQRG  943
             +LL+++++S   +N   +K FSE L  ++ +Y++ +I T++V++ELIQLAKDI+  +QRG
Sbjct  884   RLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRG  943

Query  944   EATGLSDEEVAFYDALAENESAVQMMGDHTLRLIAHELLMRLRENVSVDWAHRDSARARM  1003
             +  GL+ +E+AFYDAL  +E+A + M D  LR IAHEL   ++EN+SVDW+ RDSA+A+M
Sbjct  944   NELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKM  1003

Query  1004  RVLVKRILRKYGYPPDLQNTAVQTVLQQAEAFSSQ  1038
             RV V+R+L+KYGYPPDLQ+ AV+ V++QAE  +S+
Sbjct  1004  RVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

45) Mmol_0222 in NC_012968


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  846 bits (3204),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 506/1079 (47%), Positives = 781/1079 (73%), Gaps = 56/1079 (5%)

Query  3     KITESDIETLAIERLQALGFSYVYAPDIAPDSTTPERESFAEVLLLSRLRNAITRINPTL  62
             ++ E D+E + +E+L++L++ Y  + +I+  + +PER S  +V+L  RL +A+ +IN+ +
Sbjct  4     QFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDI  63

Query  63    PATALDEAIKTIQRISSPELLANNETFHRLLREGVNV-SYQKDGLQRGDLVWLIDFINPQ  121
              +  ++ AI  +    SP+LL NN TFH  L +G+++  Y+ +G    ++V ++DF +PQ
Sbjct  64    HPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQ  123

Query  122   NNDFVVANQFKIIENNQNKRPDVILFVNGIPLVVIELKNAADENATIKTAYQQLNTYKET  181
             NNDF+  NQF +++ +  KRPD++LF+NG+P+VVIELKN+++E   +  +Y+QL+TYK  
Sbjct  124   NNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  182   IPSLFTYNGFVIVSDGLEAKAGSISAGFSRFMAWKTADGKSEASKLTGQLETLINGMLNK  241
             IP LFT+N  ++ SDG+++KAGS++A + RFM+W++ DG +E+S   + L+ LINGMLN 
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNP  243

Query  242   STLLDLIRHFIVFEKSSKEGPKQADGTPGLISISTVKKLAAYHQYYAVNAAVISTLRATA  301
              TLLDLIR F++F+  +K          G IS    K LAAYHQYYAVN AV  +L A++
Sbjct  244   KTLLDLIRYFVLFQDDGK----------GHIS----KILAAYHQYYAVNKAVDRALLASS  289

Query  302   EAVSLAQTPASYGLSDVRNQPNGDRKAGVVWHTQGSGKSLSMVFYTGKIVLALNNPTILV  361
                                  +GD K+GV+WHTQGSGKSL+MVF++GK++  LNNPT+++
Sbjct  290   G--------------------QGDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVI  329

Query  362   ITDRNDLDDQLFDTFA-----SSSQLLRQEPKQVEDRQQLKELLKVASGGVIFTTIQKFQ  416
             +TDRNDLD+QL+ TF      S+  LLRQ PKQ E R++LK LL V SGG++FTT+QKF+
Sbjct  330   VTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFE  389

Query  417   PEEGN-VYETLSDRRNIVVIADEAHRTQYGFKAKTVDDKNKAGDVIGQKIVYGFAKYMRD  475
             PE+ + +  +L++R+N++V+ADEAHRTQYGF+AK  DDK       G+ I YG+AKY+RD
Sbjct  390   PEQNETIMAALTERKNVIVMADEAHRTQYGFNAKY-DDK-------GEGIKYGYAKYLRD  441

Query  476   ALPNATYLGFTGTPIESTDVNTPAVFGNYVDIYDIAQAVEDGATVRIYYESRLAKVQLSD  535
             ALPNAT++GFTGTP+ STD NT  VFGNY+D+YD++QAV DG+TV+IYYESR+  ++L+ 
Sbjct  442   ALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLP-  500

Query  536   EGKKLVAeldeeleqdeltetqKAKAKWTQIEALIGSENRIKNVAQDIVAHFEQRQEVFD  595
             ++  L    ++  E++E    Q+ K+KW++IEAL G+  R+  +A+DI+ HFE RQ+   
Sbjct  501   QSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMK  560

Query  596   GKGMIVSMSRRIAAELYDAIIKLKPEWHSNEPHKGVIKVVMTAASADGPMLAKHHTTKLQ  655
             GKGMIV+MSRRIA +LYD II+LKPEWHS++ +KGVIKVVMT++S+D   + +H   K +
Sbjct  561   GKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKR  620

Query  656   RKALAERMKDPDDELKLVIVRDMWLTGFDAPSMHTLYIDKPMKGHNLMQAIARVNRVYKD  715
             R  L  RMKD +DEL+LVIVRDMWLTGFD PSMHT+YIDKPMKGHNLMQAIARVNRV+KD
Sbjct  621   RSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKD  680

Query  716   KPGGLIVDYLGIASDLKEALSFYSDAGGKGNPAETQEQAVALMLEKLEIVSDMYHGFPYE  775
             KPGGLIVDY+GIA  LKEAL  Y++++    + +T ++AV LML K +++ DM   + Y 
Sbjct  681   KPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDT-DKAVELMLLKYDVIQDMLYNLDYS  739

Query  776   DYFEADTSKKLSLILAAEEHILGI-DDGKRRYVNEVTALSQAFAIAIPHDQAMDVKDEVA  834
              +     S +   I  + + ++G+ +D ++R+++ VT L++AFA+   +  A +++DE+A
Sbjct  740   KFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIA  799

Query  835   FFQAVKARLAK-FDSTGNG---RTDEEIETTIRQVIDQALVSEQVIDVFDAAGIKKPDis  890
             FF+AVKA L K +++  +G   +T  E+E+ I Q++ Q++V+E+VIDV+++ G+ +PD+S
Sbjct  800   FFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLS  859

Query  891   ilseefllelKNHEHKNVALEVLKKLLNDELKVRAKKNLVQSKSLMEMLENAIKKYHNKI  950
             ILS++FL ++    +KNVA+E+L++LL++++K   K N   SK + EML N+I+KY+++ 
Sbjct  860   ILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRS  919

Query  951   LTAAEVMDELIKISKEIVASDNEAKGLGLSEFEYAFYSAVASNNSAKELMQHEQLRELAV  1010
             + ++ V++ELI+++K+I   ++ ++ LGL+  E AFY A+ S+++AK  M++ +LR +A 
Sbjct  920   IETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAH  979

Query  1011  VLTQRVRENASIDWTIKENVKAKLKVIIKRTLRQFGYPPDMQLLATETIMKQAEMIATE  1069
              LT+ V+EN S+DW+ +++ KAK++V ++R L+++GYPPD+Q +A E ++ QAE++A++
Sbjct  980   ELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

46) G432_08520 in NC_020561


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  846 bits (3205),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 496/1075 (47%), Positives = 766/1075 (72%), Gaps = 54/1075 (5%)

Query  1     MAF-LSEAQVEQTLLEQLRGLGYVVASDEVISPDGSAPERESHDVVLLHQRLADAVLRLN  59
             M F ++E ++EQ +LE L +L+Y    ++ IS  G APER S+  V+LH+RL  A+ ++N
Sbjct  1     MNFQFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKIN  60

Query  60    PHLPLEARADAIRKLTQSVFPGLLEENRRIHTLLTEGVDVEYYGDDGVLTAGKVALLDFD  119
             +++       AI+ LT    P LLE+N  +H  L +G+++E Y+D+G      V ++DF+
Sbjct  61    SDIHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFE  120

Query  120   SPAHNDWLAVQQFVVIHGQVKRRPDVVLFVNGLPLAVIELKAPGSAGAHLAGAFNQLQTY  179
              P +ND LAV+QF V++G+  +RPD+VLF+NGLP+ VIELK + +    + ++++QL+TY
Sbjct  121   HPQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  180   KQQIPALFHTNALLVTSDGIAARVGSLSADLERFMPWRTTDGRAILEKGSPELPTLIEGV  239
             K +IP LF  N +LVTSDGI ++ GSL+A+ +RFM WR+ DG +    + + L  LI+G+
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGM  240

Query  240   FEKQRFLDLLRHFTVFGETGSG-LAKIVAGYHQYHAVNRAIESTIRASDSWHGVAEEPAS  298
             ++ + +LDL+R F +F + G G ++KI+A+YHQY AVN+A++ ++               
Sbjct  241   LNPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRAL---------------  285

Query  299   YGLPSVATQSLGDRRAGVIWHTQGSGKSLLMAFYAGRLVKHPAMENPTLVVLTDRNDLDD  358
                  +A+ + GD ++GVIWHTQGSGKSL M F++G+L+    ++NPTLV++TDRNDLD+
Sbjct  286   -----LASSGQGDGKGGVIWHTQGSGKSLTMVFFSGKLI--QMLNNPTLVIVTDRNDLDN  338

Query  359   QLFATFSMCRD-----LIRQTPVQAESREHLQQLLARASGGVIFTTLQKFG-----EVNA  408
             QL++TF   ++     L+RQTP QAE+R +L+ LL+  SGG++FTT+QKF       + A
Sbjct  339   QLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMA  398

Query  409   PLTTRRNVVVIADEAHRSQYGFRAKVDAKTGEVSYGFAKYLRDALPNASFIGFTGTPIEA  468
             +LT R+NV+V+ADEAHR+QYGF AK D K   + YG+AKYLRDALPNA+F+GFTGTP+ +
Sbjct  399   ALTERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVAS  458

Query  469   TDVNTPAVFGNYIDIYDISRAVEDGATVPIYYESRLARIELDEDEKPKLDAEVEALTEDE  528
             TD NT  VFGNYID+YD+++AV DG+TV IYYESR+  ++L +     LD   + +TED+
Sbjct  459   TDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITEDQ  516

Query  529   AVTEQEKLKAKWATVEQLVGSEKRVALVAKDLVAHFEDRLSALDGKAMVVCMSRRICVAL  588
                 +++LK+KW+ +E L G+  RV  +AKD++ HFE R  A+ GK+M+V MSRRI V L
Sbjct  517   EEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDL  576

Query  589   YDEIVKLRPDWHSTDDNAGAIKIVMTGAASDPPEWQQHIGNkarrdllakrardakdPLK  648
             YDEI++L+P+WHS DD+ G IK+VMTG++SDP   Q+HIG K RR +L KR +D +D L+
Sbjct  577   YDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQ  636

Query  649   LVIVRDMWLTGFDAPCMHTMYVDKPMQGHGLMQAIARVNRVFRDKPAGLIVDYIGIAQSL  708
             LVIVRDMWLTGFD P MHTMY+DKPM+GH LMQAIARVNRVF+DKP+GLIVDY+GIA+SL
Sbjct  637   LVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESL  696

Query  709   KSALAQYSARDQEATGVDEAQAVAVLLEKYEVVRDMYHGFDYVTALNGTPQQRLAMMAGA  768
             K AL +Y+  DQ  T++D  +AV ++L KY+V++DM   +DY    +    +R   ++ +
Sbjct  697   KEALKEYTESDQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNT  756

Query  769   IEWILDRQQQWTAAETTEEGKKNAQRRYQDSVlalskayslasasDEARGIREEVGFFQA  828
             ++ +++  +             + ++R+  +V  L+KA++L ++   A+ + +E++FF+A
Sbjct  757   MDYVIGLGE-------------DERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKA  803

Query  829   IRAALVK-----SSTGSGVTSQERDFAIQQIVSRAVVSTEIVDILKAAGIQSPDISILSD  883
             ++A+LVK         +  T+ E +  I+Q+VS++VV+ +++D+ ++ G++ PD+SILSD
Sbjct  804   VKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSD  863

Query  884   EFLAEVQQMQKKNLALEALRKLINDGIRSRSKANIVETRTFSERLEQAVARYHANAITTA  943
             +FL +V+ +++KN+A+E L +L+++ ++S  K+N   ++ FSE L +++ +Y++ +I T+
Sbjct  864   DFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETS  923

Query  944   EVLQQLIQLAKDIRAARQRGEESGLSDEEIAFYDALAENESAVQIIGDDNLKVIAHELLV  1003
              V+++LIQLAKDI+  +QRG+E GL+ +EIAFYDAL  +E+A + + D +L+ IAHEL  
Sbjct  924   KVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTK  983

Query  1004  SLKSNVSVDWAHRDSARARMRVLVKRILRKYGYPPDLQDAAVQTVLQQAEALSAG  1058
             ++K N+SVDW+ RDSA+A+MRV V+R+L+KYGYPPDLQ  AV+ V++QAE +++ 
Sbjct  984   TVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

47) Bxe_A0222 in NC_007951


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  845 bits (3201),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 495/1045 (48%), Positives = 761/1045 (73%), Gaps = 32/1045 (3%)

Query  2     TEDQLEQETLDWLADVGYRCLFGPDLAPDGANPERADYRHVLLVERLRGAVARLNPGIPP  61
              ED+LEQ  L+WL  ++Y    G +++  G  PER   ++V+L ERL  A+ ++N++I P
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62    ATREDALQQVRDLGIPALLSANRHFHQLLVGGVPVE-YQKDGELRGDFVRLVDWADPAAN  120
                E A++++     P LL  N  FH+ L+ G+ +E Y+ +G+   ++V++VD  +P  N
Sbjct  66    RFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNN  125

Query  121   EWLAVNQFAIKGPQHARRPDVMLFVNGVPLVLLELKNPADQNADIWKAYDQIQTYKAQIP  180
             + LAVNQF++   + ++RPD++LF+NG+P+V++ELKN++++  ++  +Y+Q++TYK +IP
Sbjct  126   DFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  181   DVFQYNEVLVISDGSQARMGSLSADAERFMQWRTIDGATLDPLGQFNELETLIRGVLAPT  240
             ++F +NEVLV SDG +++ GSL+A+ +RFM WR+ DG T ++ + +  L+ LI G+L P 
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGET-ESSSSLASLDVLINGMLNPK  244

Query  241   YLLDYLRFFVLFEDDGT--LVKKIAGYHQFHAVCAAIQQVVTASRPGASHKGGVVWHTQG  298
              LLD +R+FVLF+DDG   + K +A+YHQ+ AV  A+++ + AS   +  KGGV+WHTQG
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQG  304

Query  299   SGKSITMTCFAARVMQEAAMENPTIVVITDRNDLDGQLFGVF-----SLAQDLLREQPVQ  353
             SGKS+TM  F+++++Q   ++NPT+V++TDRNDLD QL++ F       +++LLR+ P Q
Sbjct  305   SGKSLTMVFFSGKLIQ--MLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQ  362

Query  354   AGTRQDLRAKLANRPSGGIVFATIQKFMPGEDEDTYPVLSDRNNIVVIADEAHRTQYGFE  413
             A TR++L++ L+   SGGIVF+T+QKF P ++E   + L++R+N++V+ADEAHRTQYGF+
Sbjct  363   AETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFN  421

Query  414   AQLRGKPGQEKYQVGYAQHLRDALPNATFVAFTGTPVSSEDRDTRAVFGEYIHVYDMQQA  473
             A+  +K    KY  GYA+ LRDALPNATFV+FTGTPV+S D++T+ VFG+YI+VYDM QA
Sbjct  422   AKYDDKGEGIKY--GYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQA  479

Query  474   KEDGATVAIYFESRLAKLSLKAEDLPHIdaevdelaedeeeSQQAKLKSRWAALEKVVGA  533
               DG+TV IY+ESR+  L+L ++ L ++D   ++++ED+EE  + +LKS+W+ +E + GA
Sbjct  480   VADGSTVKIYYESRVIPLNL-PQSL-DLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGA  537

Query  534   EPRVAAVAADLVAHFEERNKAQNGKAMVVAMSREICVHLYDEIIKLRPDWHDPDPEKGAV  593
              PRV A+A D++ HFE R++A +GK+M+V+MSR I V+LYDEII+L+P+WH  D +KG +
Sbjct  538   KPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVI  597

Query  594   KIVMTGSASDKALLRPHIYSGQVKKR--LEKRFKDPADPLRMVIVRDMWLTGFDAPCVHT  651
             K+VMTGS+SD + ++ HI  G  K+R  LEKR KD  D L++VIVRDMWLTGFD P +HT
Sbjct  598   KVVMTGSSSDPTSFQRHI--GPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHT  655

Query  652   LYVDKPMKGHNLMQAIARVNRVFKDKQGGLVVDYIGIANELKSALKEYTASNGRGRPTVD  711
             +Y+DKPMKGHNLMQAIARVNRVFKDK GGL+VDY+GIA+ LK ALKEYT S+ +++ ++D
Sbjct  656   MYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESD-QAQTAID  714

Query  712   AAEAYSVLEEKLDVLRGMLHGYDYSGFLTGGHKC-----LAGAANHVLGL-KDGKKRFAD  765
             +  A  ++  K DV+++ML   DYS F  +  K      ++ + + V+GL  D ++RF  
Sbjct  715   TDKAVELMLLKYDVIQDMLYNLDYSKF-NSEKKSERYYTISNTMDYVIGLGEDERQRFIK  773

Query  766   TALAMSKAFTLCCTLDEAKLVREEVAFMQAVKVILTK----RELSDKKKTNEERELAIRQ  821
             T   ++KAF+LC T   A+ + +E+AF +AVK  L K       +  +KT  E E  I Q
Sbjct  774   TVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQ  833

Query  822   IISSAVVSEKVVDVFEAVGLEKPNIGILDEAFLAEVRNLPERNLAVELLERLLEGEIKSR  881
             ++S +VV+E V+DV++++GLE+P+++IL + FL +V  L ++N+AVELL+RLL G++KS 
Sbjct  834   LVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSL  893

Query  882   FASNVVQEKKFSEMLANVVTRYQNRAIETAQVIEELIDMAKKFRAAATRGEELGLTEDEI  941
               +N    K+FSEML+N + +Y++R+IET++VIEELI++AK ++    RG+ELGL  DEI
Sbjct  894   MKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEI  953

Query  942   RFYDALANNESAVRELTDETLKKIAHELTENLRQNITVDWSERESVRARLRLMVKRILRK  1001
              FYDAL ++E+A + + D  L+ IAHELT  +++N++VDWS R+S +A++R+ V+R+L+K
Sbjct  954   AFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKK  1013

Query  1002  YKYPPDQQDGAVELVLQQAQALGEA  1026
             Y YPPD Q  AVE V++QA+ ++  
Sbjct  1014  YGYPPDLQKMAVEQVVEQAELMASN  1038

48) Galf_1221 in NC_014394


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  845 bits (3198),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 491/1056 (47%), Positives = 753/1056 (72%), Gaps = 53/1056 (5%)

Query  20    GLGYSIEQEENIGPDGHRPERDSHDVVVLKKRLEDAVALLNPGMPLDARQDAIRKVMQSE  79
             +L+Y   + ++I+  G  PER S+  VVL  RLE A+  +N+++     + AI+ +    
Sbjct  20    SLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHPRFIEKAIHELTLEK  79

Query  80    LPLMLEENRRIHKLMTEGVDVEYYADDGTLTAGKVSLINFERPEQNDWLVVSQFVVIAGQ  139
              P +LE+N  +H  + +G+++E Y D+G      V +++FE+P++ND L V+QF V+ G+
Sbjct  80    SPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNNDFLAVNQFTVVNGD  139

Query  140   YNRRPDVVVFVNGLPLGVIELKAPGSGNATLVGAFNQLQTYKKQIPALFNTNALLVTSDG  199
             Y +RPD+V+F+NGLP+ VIELK + +    + ++++QL+TYK +IP LF  N +LVTSDG
Sbjct  140   YTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTSDG  199

Query  200   ITARVGSLSADLERFMPWRTTDGKDVAPKGAPELSTLIEGVFEQRRLLDMLCHFTVFGET  259
             I ++ GSL+A+ +RFM WR+ DG   ++ + + L  LI+G+++ + LLD++  F +F + 
Sbjct  200   INTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPKTLLDLIRYFVLFQDD  259

Query  260   GSG-LAKIIAGYHQFHAVIRAVDSTLRASSQWQGVQEDPRDYGLPSVKTQAKGDRRAGVI  318
             G G ++KI+A+YHQ+ AV +AVD +L ASS                    ++GD ++GVI
Sbjct  260   GKGHISKILAAYHQYYAVNKAVDRALLASS--------------------GQGDGKGGVI  299

Query  319   WHTQGSGKSLLMAFYAGQLVKHPAMANPTLVVLTDRNDLDDQLFATFSMCRD-----LIR  373
             WHTQGSGKSL M F++G+L+    + NPTLV++TDRNDLD+QL++TF   ++     L+R
Sbjct  300   WHTQGSGKSLTMVFFSGKLI--QMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLR  357

Query  374   QTPVQADSREDLTKLLARASGGVIFTTLQKFGETSQ-----ALTDRRNVVVIADEAHRSQ  428
             QTP QA++R +L  LL+  SGG++FTT+QKF    +     ALT+R+NV+V+ADEAHR+Q
Sbjct  358   QTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQ  417

Query  429   YGFRAKVDAKTGEISYGFAKYLRDALPNASFIGFTGTPIEADDVNTPAVFGNYIDVYDIS  488
             YGF AK D K   I YG+AKYLRDALPNA+F+GFTGTP+ + D NT  VFGNYIDVYD++
Sbjct  418   YGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMT  477

Query  489   RAVEDGATVPIYYESRLARIELDEDEKPKIDAEVNELTEDDPEVEQERFKRKWSTVEALV  548
             +AV DG+TV IYYESR+  ++L +     +D   N++TED+ E  ++R+K KWS +EAL 
Sbjct  478   QAVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITEDQEEDVKQRLKSKWSRIEALA  535

Query  549   GSDKRLALVAQDMVTHFEDRVAALDGKAMVVCMSRRICVKLYDEIVKLRPDWHSADDNAG  608
             G+  R+  +A+D++ HFE R  A+ GK+M+V MSRRI V LYDEI++L+P+WHS DD+ G
Sbjct  536   GAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKG  595

Query  609   AVKIVMTGAASDPEDWQQHIGNkarrdllakrardakdPLKLVIVRDMWLTGFDAPCMHT  668
              +K+VMTG++SDP   Q+HIG K RR +L KR +D +D L+LVIVRDMWLTGFD P MHT
Sbjct  596   VIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHT  655

Query  669   MYVDKPMQGHGLMQAIARVNRVFRDKPAGLIVDYIGIAQNLKSALQQYSKNDQENTGVDE  728
             MY+DKPM+GH LMQAIARVNRVF+DKP+GLIVDY+GIA++LK AL++Y+ +DQ +T++D 
Sbjct  656   MYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDT  715

Query  729   SQAIAVLMEKYEVVRDMYHGFDYASAMGGTPQERLAMMAGAIEWILDMQQKLAAKEKTKD  788
              +A+ +++ KY+V++DM   +DY+   +    ER   ++ +++ ++++ +          
Sbjct  716   DKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGE----------  765

Query  789   GKKDAHRRYQDAVlalskafslasasDEAREIREEVGFFQAIRAALVK-----SSTGSGV  843
                D ++R+  +V  L+KAF+L ++   A+E+ +E++FF+A++A+LVK         +  
Sbjct  766   ---DERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRK  822

Query  844   TQQERELAIQQIVSRAVVSTEIVDILAAAGIKSPDISILSDEFLAEVQQMERKNLALEAL  903
             T  E E  I+Q+VS++VV+ +++D+  + G+  PD+SILSD+FL +V+ + +KN+A+E L
Sbjct  823   TPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELL  882

Query  904   RKLINDGIRSRSKSNVVQTKAFSERLEDAVARYHANAITTAEVLQELIDLAKDIRAARQR  963
              +L+++ ++S  K+N   +K FSE L +++ +Y++ +I T+ V++ELI+LAKDI+  +QR
Sbjct  883   NRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQR  942

Query  964   GEEQGLSEDEIAFYDALAENESAIQMMGDDKLKLIAHELLVSLRENVSVDWAHRDSARAR  1023
             G+E GL+ DEIAFYDAL  +E+A + M D KL+ IAHEL  +++EN+SVDW+ RDSA+A+
Sbjct  943   GNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAK  1002

Query  1024  MRVLVKRILRKYGYPPDLQDAAVQTVLQQAEALSST  1059
             MRV V+R+L+KYGYPPDLQ  AV+ V++QAE ++S 
Sbjct  1003  MRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

49) Metme_1967 in NC_015572


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  844 bits (3194),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 498/1061 (47%), Positives = 773/1061 (73%), Gaps = 48/1061 (4%)

Query  2     TEDQLEQEALGWLAEVGYSTLYGPDLAPDGDNPERDNYLQVVLVERLRSAIARLNPSIPL  61
              ED+LEQ  L WL  ++Y    G +++  G  PER +  +VVL ERL  A+ ++N+ I  
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62    AAREDALQQILNLE-VPGLLAANRHFHRLLVNGVPVE-YQKDGDTRGDRVRLIEFAEPSS  119
                E A+++ L LE  P LL  N  FH  L+NG+ +E Y+ +G++  + V++++F +P +
Sbjct  66    RFIEKAIHE-LTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQN  124

Query  120   NEWLAINQFAIKGPKHSRRPDIILFINGLPLVLLELKNPADENADIWKAFGQIQTYKEQI  179
             N+ LA+NQF++     ++RPDI+LFINGLP+V++ELKN+++E  ++  ++ Q++TYK +I
Sbjct  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  180   PDVFQYNEVLVVSDGSEARLGSLSSDAERFMQWRTIDGITLDPLGQFNELETLIHGLLNP  239
             P++F +NEVLV SDG +++ GSL+++ +RFM WR+ DG T ++ + +  L+ LI+G+LNP
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGET-ESSSSLASLDVLINGMLNP  243

Query  240   ATLLDYLRFFVLFEDDG-GLVKKV-AGYHQYHAVRAAIQQVVTASRPDGNHKGGVVWHTQ  297
              TLLD +R+FVLF+DDG G + K+ A+YHQY AV  A+++ + AS  +G+ KGGV+WHTQ
Sbjct  244   KTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQ  303

Query  298   GSGKSITMTCFAARVMQETAMENPTIVVITDRNDLDGQLFGVF-----SLGQDLLREQPV  352
             GSGKS+TM  F+++++Q   ++NPT+V++TDRNDLD QL++ F       G++LLR+ P 
Sbjct  304   GSGKSLTMVFFSGKLIQ--MLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPK  361

Query  353   QAETRQDLRAKLDNRPSGGIVFATIQKFMPGADEDSFPVLSDRSNIVVIADEAHRTQYGF  412
             QAETR++L++ L    SGGIVF+T+QKF P  +E   + L++R N++V+ADEAHRTQYGF
Sbjct  362   QAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGF  420

Query  413   EAKLKTVKTQQTAANEGRVDMAAEYRGMYQVGYAQHLRDALPNATFVAFTGTPVSLEDRD  472
             +AK            +++ + +  Y      GYA+ LRDALPNATFV+FTGTPV+  D++
Sbjct  421   NAKY-----------DDKGE-GIKY------GYAKYLRDALPNATFVGFTGTPVASTDKN  462

Query  473   TRAVFGEYIHVYDMQQAKEDGATVAIYFESRLAKLALKPEQLPQIddevdelaedeeedQ  532
             T+ VFG+YI+VYDM QA  DG+TV IY+ESR+  L L P+ L ++D+  ++++ED+EED 
Sbjct  463   TQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNL-PQSL-DLDEAYNDITEDQEEDV  520

Query  533   QAKLKSRWAALEKVVGAEPRIASVAADLVAHFEERNKAQDGKAMVVAMSREICVHLYNEI  592
             + +LKS+W+ +E + GA PR+ ++A D++ HFE R++A  GK+M+V+MSR I V+LY+EI
Sbjct  521   KQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEI  580

Query  593   IKLRPDWHSDDPEQGAIKIVMTGSASDKALLRPHIYSKQQKKRLEKRFKDPADPLRLVIV  652
             I+L+P+WHSDD ++G IK+VMTGS+SD + ++ HI +K+++  LEKR KD  D L+LVIV
Sbjct  581   IRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIV  640

Query  653   RDMWLTGFDAPCVHTLYVDKPMKGHNLMQAIARVNRVFKDKQGGLVVDYIGIANELKSAL  712
             RDMWLTGFD P +HT+Y+DKPMKGHNLMQAIARVNRVFKDK GGL+VDY+GIA+ LK AL
Sbjct  641   RDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEAL  700

Query  713   KDYTASQGRGRPTVDAAEAYAVLEEKLDILRGILHGYDYSDFLTTGHKR------LAGAA  766
             K+YT S+ +++ ++D+  A  ++  K D+++++L   DYS F   ++K+      ++ + 
Sbjct  701   KEYTESD-QAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKF--NSEKKSERYYTISNTM  757

Query  767   NHVLG-QKDGKKRFADTSLAMSKAFTLCCTLDEAKAVREEMAFFQAVKVILTK----PDI  821
             + V+G   D ++RF  T   ++KAF+LC T   A+ + +E+AFF+AVK  L K    P  
Sbjct  758   DYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKE  817

Query  822   SRKKRSDEERDLAIRQIINSAVVSEDVVDIFEAVGLDKPNIGILDEAFLADVRNLPERNL  881
             ++ +++  E +  I Q+++ +VV+EDV+D+++++GL++P+++IL + FL DV  L ++N+
Sbjct  818   GKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNV  877

Query  882   AVELLERLLEGEIKSRFAGNVVQEKKFSELLTNVIKRYQNRAIETAQVIEELIQMAKKFR  941
             AVELL+RLL G++KS    N    K+FSE+L N I++Y++R+IET++VIEELIQ+AK ++
Sbjct  878   AVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIK  937

Query  942   EAAGRGESLGLSEDEIRFYDALADNESAVRELSDDTLKLIAHELTENLRQNITVDWSQRE  1001
             +   RG+ LGL+ DEI FYDAL  +E+A + + D  L+ IAHELT  +++N++VDWS+R+
Sbjct  938   QEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRD  997

Query  1002  SVRAKLRLMVKRILRKYKYPPDQQEAAIELVLQQAQALGDA  1042
             S +AK+R+ V+R+L+KY YPPD Q  A+E V++QA+ ++  
Sbjct  998   SAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

50) Caur_1816 in NC_010175


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  844 bits (3195),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 474/1063 (45%), Positives = 768/1063 (73%), Gaps = 51/1063 (4%)

Query  3     HLTESNIETVALDWLKSLGWQVAHGPGIAPGMSAAERQNYGEVVLEQRLRDALARLNPDL  62
             ++ E ++E V L+WL SL+ +   G  I+    A+ER++  +VVL++RL  AL ++N+D+
Sbjct  4     QFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDI  63

Query  63    PTEALDDAFRKLTQPEGADLLQRNRVVHLMLANGVTVE-YRHPDGGIRGTQVRVIDFDDP  121
                 ++ A++ LT   +++LL+ N   H  L NG+ +E Y + + +I    V+++DF++P
Sbjct  64    HPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEI-VKIVDFEHP  122

Query  122   ANNNWLAVNQFSIEENKHNRRADVVLFVNGLPLAIIELKNAADEHATIWSAFQQLQTYQV  181
              NN+ LAVNQF++ +    +R+D+VLF+NGLP+ +IELKN+++E   +  +++QL+TY++
Sbjct  123   QNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKM  182

Query  182   EIPSLFVFNETLVISDGLEARIGTLGAGREWFKPWRTISGMQVEDVGVPQLEVVLKGVFE  241
              IP LF FNE LV SDG++++ G+L A  ++F  WR+  G      +++ L+V+++G+++
Sbjct  183   RIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLN  242

Query  242   KNRFLTLIRDFIVFEDDGSGRLVKKMAGYHQFHAVLVAVKETLRASAVVSSNRMAESGGV  301
              + +L LIR F++F+DDG G++ K +A+YHQ+ AV  AV  +L          +A SG  
Sbjct  243   PKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRAL----------LASSG--  290

Query  302   YEAGREPGGKPGDRRIGVVWHTQGSGKSLTMVFYAGCIIRKPAMENPTIVVLTDRNDLDD  361
                        GD + GV+WHTQGSGKSLTMVF++G +I+   ++NPT+V++TDRNDLD+
Sbjct  291   ----------QGDGKGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDN  338

Query  362   QLFNTFSRCQD-----LLRQPPVQAESRVHLRQLLSVQSGGIVFTTIQKFLPEEKGDRHP  416
             QL++TF + ++     LLRQ P QAE+R +L+ LLSV+SGGIVFTT+QKF PE++    +
Sbjct  339   QLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMA  398

Query  417   VLSNRRNIVVITDEAHRSQYDFID-----------GFARHMRDALPQASFIGFTGTPIEK  465
              L++R+N++V++DEAHR+QY+F             G+A+ +RDALP+A+F+GFTGTP+  
Sbjct  399   ALTERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVAS  458

Query  466   ADADTRAVFGDYISIYDIQRAVEDGATVSIYYEARLAKLDLPDELKPKIDDefeeitege  525
             +D +T+ VFG+YI +YD+ +AV DG+TV IYYE+R+  L+LP+ L   +D+ +++ITE++
Sbjct  459   TDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQ  516

Query  526   everkeKLKTKWAQLESIVGTEQRLRLIANDIIEHFERRLEAIEGKGMVVCMSRRICVEL  585
             E + K++LK+KW+++E++ G+  R+  +A+DII+HFE R +A+ GKGM+V MSRRI V+L
Sbjct  517   EEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDL  576

Query  586   YNIICTLRPNWHHEDDDKGVIKVVMTGSASDPVDWQPHIRNKQRRELLAKRFRDPNDPLK  645
             Y+ I  L+P+WH +DDDKGVIKVVMTGS+SDP   Q HI  K+RR +L KR +D ND L+
Sbjct  577   YDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQ  636

Query  646   LVIVRDMWLTGFDCPSLHTMYLDKPMRGHGLMQAIARVNRVFRDKPGGLVVDYLGLAHEL  705
             LVIVRDMWLTGFD PS+HTMY+DKPM+GH LMQAIARVNRVF+DKPGGL+VDY+G+A+ L
Sbjct  637   LVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESL  696

Query  706   KAALAVYTESGGTGKTTIDQEETVALMQEKYEICCGILHGFDWSDWASGDAHARIGLLPA  765
             K AL  YTES + ++T+ID + +V LM  KY++  ++L  +D S   S     R   ++ 
Sbjct  697   KEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISN  755

Query  766   AQEHVLA-RVKGKERFVQAVRDLTKAFALAVPHEKALEIRDDVAFFQALSAALTK--RAP  822
             + + V++     ++RF+++V +L KAFAL   +  A E+ D++AFF+A+ A+L K  ++P
Sbjct  756   TMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPP  815

Query  823   GDV---RTEEQLDHAIRRIIAQVIAPEGVEDIFAAAGLKKPDISILSDEFLAEVRGMPHK  879
              +    +T  +++  I ++++Q +  E+V D++ + GL +PD+SILSD+FL +V G+ +K
Sbjct  816   KEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQK  875

Query  880   NLAVEVLQKLLNGEIKRRSHKNIVQARSFAELLQQALHRYQNRAIEAAQVIEELITLAKE  939
             N+AVE+L++LL+G++K     N   ++ F+E+L +++++Y++R+IE+++VIEELI LAK+
Sbjct  876   NVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKD  935

Query  940   MREADRRGEVLGLSEEELAFYDALETNDSAVAVLGDQTLRTIARELVETVRNSISIDWAQ  999
             +++ ++RG+ LGL+ +E+AFYDAL ++++A   + D+ LR+IA+EL  TV++++S+DW++
Sbjct  936   IKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSK  995

Query  1000  REDVRANLRRLVKRILRKHGYPPDKQEKATQTVLEQAEVLSAE  1042
             R+  +A++R  V+R+L+K GYPPD Q  A + V+EQAE+++++
Sbjct  996   RDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

51) Chy400_1964 in NC_012032


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  844 bits (3195),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 474/1063 (45%), Positives = 768/1063 (73%), Gaps = 51/1063 (4%)

Query  3     HLTESNIETVALDWLKSLGWQVAHGPGIAPGMSAAERQNYGEVVLEQRLRDALARLNPDL  62
             ++ E ++E V L+WL SL+ +   G  I+    A+ER++  +VVL++RL  AL ++N+D+
Sbjct  4     QFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDI  63

Query  63    PTEALDDAFRKLTQPEGADLLQRNRVVHLMLANGVTVE-YRHPDGGIRGTQVRVIDFDDP  121
                 ++ A++ LT   +++LL+ N   H  L NG+ +E Y + + +I    V+++DF++P
Sbjct  64    HPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEI-VKIVDFEHP  122

Query  122   ANNNWLAVNQFSIEENKHNRRADVVLFVNGLPLAIIELKNAADEHATIWSAFQQLQTYQV  181
              NN+ LAVNQF++ +    +R+D+VLF+NGLP+ +IELKN+++E   +  +++QL+TY++
Sbjct  123   QNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKM  182

Query  182   EIPSLFVFNETLVISDGLEARIGTLGAGREWFKPWRTISGMQVEDVGVPQLEVVLKGVFE  241
              IP LF FNE LV SDG++++ G+L A  ++F  WR+  G      +++ L+V+++G+++
Sbjct  183   RIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLN  242

Query  242   KNRFLTLIRDFIVFEDDGSGRLVKKMAGYHQFHAVLVAVKETLRASAVVSSNRMAESGGV  301
              + +L LIR F++F+DDG G++ K +A+YHQ+ AV  AV  +L          +A SG  
Sbjct  243   PKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRAL----------LASSG--  290

Query  302   YEAGREPGGKPGDRRIGVVWHTQGSGKSLTMVFYAGCIIRKPAMENPTIVVLTDRNDLDD  361
                        GD + GV+WHTQGSGKSLTMVF++G +I+   ++NPT+V++TDRNDLD+
Sbjct  291   ----------QGDGKGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDN  338

Query  362   QLFNTFSRCQD-----LLRQPPVQAESRVHLRQLLSVQSGGIVFTTIQKFLPEEKGDRHP  416
             QL++TF + ++     LLRQ P QAE+R +L+ LLSV+SGGIVFTT+QKF PE++    +
Sbjct  339   QLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMA  398

Query  417   VLSNRRNIVVITDEAHRSQYDFID-----------GFARHMRDALPQASFIGFTGTPIEK  465
              L++R+N++V++DEAHR+QY+F             G+A+ +RDALP+A+F+GFTGTP+  
Sbjct  399   ALTERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVAS  458

Query  466   ADADTRAVFGDYISIYDIQRAVEDGATVSIYYEARLAKLDLPDELKPKIDDefeeitege  525
             +D +T+ VFG+YI +YD+ +AV DG+TV IYYE+R+  L+LP+ L   +D+ +++ITE++
Sbjct  459   TDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQ  516

Query  526   everkeKLKTKWAQLESIVGTEQRLRLIANDIIEHFERRLEAIEGKGMVVCMSRRICVEL  585
             E + K++LK+KW+++E++ G+  R+  +A+DII+HFE R +A+ GKGM+V MSRRI V+L
Sbjct  517   EEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDL  576

Query  586   YNIICTLRPNWHHEDDDKGVIKVVMTGSASDPVDWQPHIRNKQRRELLAKRFRDPNDPLK  645
             Y+ I  L+P+WH +DDDKGVIKVVMTGS+SDP   Q HI  K+RR +L KR +D ND L+
Sbjct  577   YDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQ  636

Query  646   LVIVRDMWLTGFDCPSLHTMYLDKPMRGHGLMQAIARVNRVFRDKPGGLVVDYLGLAHEL  705
             LVIVRDMWLTGFD PS+HTMY+DKPM+GH LMQAIARVNRVF+DKPGGL+VDY+G+A+ L
Sbjct  637   LVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESL  696

Query  706   KAALAVYTESGGTGKTTIDQEETVALMQEKYEICCGILHGFDWSDWASGDAHARIGLLPA  765
             K AL  YTES + ++T+ID + +V LM  KY++  ++L  +D S   S     R   ++ 
Sbjct  697   KEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISN  755

Query  766   AQEHVLA-RVKGKERFVQAVRDLTKAFALAVPHEKALEIRDDVAFFQALSAALTK--RAP  822
             + + V++     ++RF+++V +L KAFAL   +  A E+ D++AFF+A+ A+L K  ++P
Sbjct  756   TMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPP  815

Query  823   GDV---RTEEQLDHAIRRIIAQVIAPEGVEDIFAAAGLKKPDISILSDEFLAEVRGMPHK  879
              +    +T  +++  I ++++Q +  E+V D++ + GL +PD+SILSD+FL +V G+ +K
Sbjct  816   KEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQK  875

Query  880   NLAVEVLQKLLNGEIKRRSHKNIVQARSFAELLQQALHRYQNRAIEAAQVIEELITLAKE  939
             N+AVE+L++LL+G++K     N   ++ F+E+L +++++Y++R+IE+++VIEELI LAK+
Sbjct  876   NVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKD  935

Query  940   MREADRRGEVLGLSEEELAFYDALETNDSAVAVLGDQTLRTIARELVETVRNSISIDWAQ  999
             +++ ++RG+ LGL+ +E+AFYDAL ++++A   + D+ LR+IA+EL  TV++++S+DW++
Sbjct  936   IKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSK  995

Query  1000  REDVRANLRRLVKRILRKHGYPPDKQEKATQTVLEQAEVLSAE  1042
             R+  +A++R  V+R+L+K GYPPD Q  A + V+EQAE+++++
Sbjct  996   RDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

52) Clocl_1698 in NC_016627


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  841 bits (3184),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 522/1053 (50%), Positives = 766/1053 (73%), Gaps = 35/1053 (3%)

Query  6     ESEIEKMAIEELVKLGYEYFSGPDIAPDAPFAERKGYGDVLLKKRLIDAVIQLNPGLPYD  65
             E ++E++ +E L  L+Y+Y  G +I+  +  +ERK+  DV+L  RL  A+ ++N+++   
Sbjct  7     EDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHPR  66

Query  66    VVIEAVNKVSRISSSNLIGDNETFHKMLVDGVPVE-YRKNGDIVGDYVKLVDFSEDGVDN  124
              +  A++ ++   S+NL+ +N TFH  L++G+ +E Y  +G+ + + VK+VDF  +  +N
Sbjct  67    FIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDF--EHPQN  124

Query  125   NEFLVVNQFTVIENNNNKRPDILLFINGIPMVLFELKNPVDENATIRKAYDQICTYKAII  184
             N+FL VNQFTV++ +  KRPDI+LFING+P+V++ELKN+ +E   +  +Y+Q+ TYK  I
Sbjct  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  185   PSLFTYNEICVISDGLEAKAGSLTAPFSRFSTWKTKDGLNEASRFEDQLTTLIHGLCNKK  244
             P LFT+NE+ V SDG+++KAGSLTA + RF TW++KDG  E+S     L  LI+G+ N K
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPK  244

Query  245   TLLDYIRNFITFEksktedkktkitkvetvkkiAAYHQYYAVNKAVKSTIEAARADGSKK  304
             TLLD IR F+ F+     +    +         AAYHQYYAVNKAV  ++ A+ ++G  K
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKIL---------AAYHQYYAVNKAVDRALLASSGQGDGK  295

Query  305   AGVIWHTQGSGKSLSMVFYAGKLVQNLNNPTIVVITDRNDLDDQLFDTFA-----GNSDL  359
             +GVIWHTQGSGKSL+MVF++GKL+Q LNNPT+V++TDRNDLD+QL+ TF      +  +L
Sbjct  296   GGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGL  355

Query  360   LRQPPKQAESCEHLKELLKVASGGIVFTTIQKFIPDNDSSVYELLSERDNIVVIADEAHR  419
             LRQ PKQAE+  +LK LL V SGGIVFTT+QKF P+++ ++   L+ER N++V+ADEAHR
Sbjct  356   LRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHR  415

Query  420   TQYGFNAKLREIKDENNQVVGQRIAYGFAKYMRDALPNATFIGFTGTPVEKQDANTPAVF  479
             TQYGFNAK  +         G+ I YG+AKY+RDALPNATF+GFTGTPV   D NT  VF
Sbjct  416   TQYGFNAKYDDK--------GEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVF  467

Query  480   GNYIDIYDIAQAVEDKVTVKIYYESRLAKVNLTEEGKKLIeefdreleevdekdeakaak  539
             GNYID+YD++QAV D  TVKIYYESR+  +NL +     ++E   ++ E +E D  +  K
Sbjct  468   GNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLK  525

Query  540   mkwakleaIVGNKERLATLAKDIVTHFEDRQKVFQGKAMIVAMSRRIAVDLYNEIIKLRP  599
              KW+++EA+ G K R+ +LAKDI+ HFE RQ+  +GK+MIV+MSRRIAVDLY+EII+L+P
Sbjct  526   SKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKP  585

Query  600   EWHSDDLDKGAIKVVMTSSSSDGPEMQKHHTTKEQRKMLAQRMKDENDPLKIVIVRDMWL  659
             EWHSDD DKG IKVVMT+SSSD    Q+H   K +R +L +RMKD ND L++VIVRDMWL
Sbjct  586   EWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWL  645

Query  660   TGFDVPCLNTMYIDKPMKDHNLMQAIARVNRVFKDKPGGLIVDYIGIAPNLKKALSFYAE  719
             TGFDVP ++TMYIDKPMK+HNLMQAIARVNRVFKDKPGGLIVDY+GIA +LK AL  Y+E
Sbjct  646   TGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTE  705

Query  720   SGGKGVPAETQARAVEIMLEKLEVVRQILHGFDYTSFFKAEVKDKLSIILRAEDFILS-T  778
             S+    + +T+ +AVE+ML K +V++++L  +DY+ F      ++   I  + D++++  
Sbjct  706   SDQAQTAIDTD-KAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLG  764

Query  779   DDKKARFIKEVTLLSQAYALAKPDKATVTHAEEIAFFQAVKARLTKFETSGESG------  832
             +D + RFIK VT L++A+AL   + ++    +EIAFF+AVKA L K+  +   G      
Sbjct  765   EDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTP  824

Query  833   INYDSVIKNIVDSAIVSDEVVDIFDAAGIEKPELSILSDEFLMEIKGMKHKNLAIELLKK  892
              + ++ I+++V  ++V+++V+D++++ G+E+P+LSILSD+FL ++ G+K+KN+A+ELL++
Sbjct  825   AEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNR  884

Query  893   ILSDEIKVRSKYNLTKSKSLMEMLTLALKRYQNNLLTTAEIIEELIRIAKEIKNADRRGE  952
             +L +++K   K N T SK + EML  ++++Y++  + T+ +IEELI++AK+IK+ ++RG+
Sbjct  885   LLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGN  944

Query  953   ELGLSEDELAFYDALETNDSAVKVLGDETLRTIARELADKVRKNATIDWTLKESVRAKLM  1012
             ELGL+ DE+AFYDAL ++++A K + D  LR+IA+EL+  V+ N ++DW+ ++S +AK+ 
Sbjct  945   ELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMR  1004

Query  1013  VLVRRTLNKYGYPPDKQQRAVETVMKQAENLAD  1045
             V VRR L+KYGYPPD Q+ AVE V+ QAE +A 
Sbjct  1005  VAVRRLLKKYGYPPDLQKMAVEQVVEQAELMAS  1037

53) MmarC6_0040 in NC_009975


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  841 bits (3186),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 488/1040 (47%), Positives = 774/1040 (75%), Gaps = 25/1040 (2%)

Query  6     EDTIEQGTLELLESIGYEIISGPEIAPDGTSPERKDYSEVVLVSRLRNAISRINPNVPEV  65
             ED +EQ  LE LES++Y+   G EI+  G +PERK   +VVL  RL +A+ +IN+++   
Sbjct  7     EDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHPR  66

Query  66    AREDALRKVLRLE-NPNLLMNNEKFHEFIFKGIDVE-YPIDGRVKGDKVYLLD-KDPLKN  122
               E A++  L LE +PNLL NN  FHE +++GI++E Y  +G+   + V ++D  +P +N
Sbjct  67    FIEKAIHE-LTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNN  125

Query  123   EFVAVNQFTIIQNNKNRRPDIVIFVNGLPLSVIELKNPTKEDATIWSAYNQIQTYKSEIS  182
             +F+AVNQFT+++ +  +RPDIV+F+NGLP+ VIELKN+T+E   +  +Y+Q++TYK  I+
Sbjct  126   DFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  183   ELFKYNELILISDGTESRIGTLSSNKEWFLPWKSIDGTSEINNGVSQLKISILGMFDKTR  242
             +LF +NE+++ SDG +++ G+L++N ++F+ W+S DG +E +++++ L + I GM++   
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPKT  245

Query  243   FIDIIKNFIVFKKDGK-DIIKVIAGYHQYFAANRAIEKTIEAISG--NRRCGVVWHTQGS  299
             ++D+I+ F++F+ DGK +I K++A+YHQY+A N+A+++++ A SG  + + GV+WHTQGS
Sbjct  246   LLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQGS  305

Query  300   GKSLTMAFYAGKLAITPELRNPTIVVVTDRNDLDDQLFGTFASCID-----VLKQTPVQA  354
             GKSLTM F++GKL     L NPT+V+VTDRNDLD+QL++TF    +     +L+QTP QA
Sbjct  306   GKSLTMVFFSGKL--IQMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQA  363

Query  355   KNAEDLKEQLKVVSGGVIFTTMQKFSVDELNAKYPMLSDRENIIVMADEAHRSQYGLKAR  414
                 +LK  L V SGG++FTTMQKF  ++ ++  + L++R N+IVMADEAHR+QYG++A+
Sbjct  364   ETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFNAK  423

Query  415   SVEKNGEVGITYGFAKYLRDALPNASFIGFTGTPIDFEDKSTRSIFGEYIDIYDVRRAVA  474
               +K    GI YG+AKYLRDALPNA+F+GFTGTP+   DK+T+ +FG+YID+YD+ +AVA
Sbjct  424   YDDKGE--GIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVA  481

Query  475   DGRTVKIYYESRVAKIGIENDVLAKLDAefeevtefeeNYKKEKLKGKWAQLEAIVGSND  534
             DG TVKIYYESRV  + + + +   LD  ++++TE +E+  K++LK+KW+++EA+ G++ 
Sbjct  482   DGSTVKIYYESRVIPLNLPQSL--DLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKP  539

Query  535   RISKVAQDIVNHFEKREETLSGKAIVVCMSRRICVDLYDEIIRLRPEWHNDDDKLGVLKV  594
             R+  +A+DI++HFE R++++ GK+++V MSRRI VDLYDEIIRL+PEWH+DDD  GV+KV
Sbjct  540   RVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKV  599

Query  595   IMTGSAADGTEWQKHIRSKGKRKELAEHFKNPESEFKIAIVRDMWLTGFDVPCLHTLYID  654
             +MTGS++D T  Q+HI +K +R  L  + K+ + E+++ IVRDMWLTGFDVP +HT+YID
Sbjct  600   VMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYID  659

Query  655   KPMKGHGLMQAIARVNRVFRDKPGGLVVDYIGIAQDLKYALMNYTSSGGTGKPTYDIEDA  714
             KPMKGH LMQAIARVNRVF+DKPGGL+VDY+GIA+ LK AL +YT S + ++ + D + A
Sbjct  660   KPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDKA  718

Query  715   VNLMKSKYEAMKDFFYGHDYSKFFNGTNIEKMDVIPETLEFILN-QPDGKKRFVKLALEL  773
             V+LM  KY+ ++D +Y  DYSKF +  + E+   I++T+++++    D ++RF+K   EL
Sbjct  719   VELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTEL  778

Query  774   IKSYALSLPHEEAVKIREEVAFFTGVKAALYK-----NTEISGKPEDELNSAIKQIVSGA  828
              K++AL   +  A  + +E+AFF +VKA+L K     +   + K   E+++ I+Q+VS +
Sbjct  779   GKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQS  838

Query  829   VRTDGIIDVFGEAGLEKPDISILSEQFLEDVKNMKYKNLALETLKKILNDEIRAKFKNNL  888
             V T+++IDV+   GLE+PD+SILS++FL DV  +K KN+A+E L+++L++++++  K N 
Sbjct  839   VVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNA  898

Query  889   LQEKKFSEMIENAIKRYHNKAIDSAAVIQELIAIAKEIENAKRRGEELHLTEEELAFYDA  948
                K+FSEM+ N+I++Y++++I+++ VI+ELI +AK+I + ++RG+EL L  +E+AFYDA
Sbjct  899   TVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDA  958

Query  949   LSDNDSAKEILGTEILTEIARELTETLRNSVSIDWEVRETVRATLRVKIKRLLRKYGYPP  1008
             L  +++AK  +    L  IA+ELT T+++++S+DW  R++ +A +RV ++RLL+KYGYPP
Sbjct  959   LVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPP  1018

Query  1009  DKQQIAADLVLKQAETISKE  1028
             D Q++A + V+ QAE ++ +
Sbjct  1019  DLQKMAVEQVVEQAELMASN  1038

54) MmarC7_0017 in NC_009637


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  841 bits (3185),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 486/1040 (47%), Positives = 772/1040 (75%), Gaps = 25/1040 (2%)

Query  6     EDTIEQGTLELLESIGYEIISGPEIAPDGTSPERKDYSEVVLVSRLRNAISRINPKVPEV  65
             ED +EQ  LE LES++Y+   G EI+  G +PERK   +VVL  RL +A+ +IN+ +   
Sbjct  7     EDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHPR  66

Query  66    AREDALRKVLRLE-NPNLLMNNEKFHEFIFKGIDVE-YPIDGRVKGDKVYLLD-KNPLKN  122
               E A++  L LE +PNLL NN  FHE +++GI++E Y  +G+   + V ++D  +P +N
Sbjct  67    FIEKAIHE-LTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNN  125

Query  123   EFVAVNQFTIIQNNKNRRPDIVIFVNGLPLSVIELKNPTKEDATIWSAYNQIQTYKSEIS  182
             +F+AVNQFT+++ +  +RPDIV+F+NGLP+ VIELKN+T+E   +  +Y+Q++TYK  I+
Sbjct  126   DFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  183   ELFKYNELILISDGTESRIGTLSSNKEWFLPWKSIDGTSEINNGVSQLKISILGMFDKTR  242
             +LF +NE+++ SDG +++ G+L++N ++F+ W+S DG +E +++++ L + I GM++   
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPKT  245

Query  243   FIDIIKNFIVFKKDGK-DIIKVIAGYHQYFAANRAIEKTI--EAVSGNRRCGVVWHTQGS  299
             ++D+I+ F++F+ DGK +I K++A+YHQY+A N+A+++++   +  G+ + GV+WHTQGS
Sbjct  246   LLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQGS  305

Query  300   GKSLTMAFYAGKLAITPELKNPTIVVVTDRNDLDDQLFGTFASCID-----VLKQTPVQA  354
             GKSLTM F++GKL     L+NPT+V+VTDRNDLD+QL++TF    +     +L+QTP QA
Sbjct  306   GKSLTMVFFSGKL--IQMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQA  363

Query  355   KNAEDLKEQLKVVSGGVIFTTMQKFSVDELNAKYPMLSDRENIIVMADEAHRSQYGLKAR  414
                 +LK  L V SGG++FTTMQKF  ++ ++  + L++R N+IVMADEAHR+QYG++A+
Sbjct  364   ETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFNAK  423

Query  415   SVEKNGEVGITYGFAKYLRDALPNASFIGFTGTPIDFEDKSTRSIFGEYIDIYDVRRAVA  474
               +K    GI YG+AKYLRDALPNA+F+GFTGTP+   DK+T+ +FG+YID+YD+ +AVA
Sbjct  424   YDDKGE--GIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVA  481

Query  475   DGRTVKIYYESRVAKIGIENDVLAKLDAefeevtefeeNYKKEKLKGKWAQLEAIVGSND  534
             DG TVKIYYESRV  + + + +   LD  ++++TE +E+  K++LK+KW+++EA+ G++ 
Sbjct  482   DGSTVKIYYESRVIPLNLPQSL--DLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKP  539

Query  535   RISNVAQDIVNHFEKREETLSGKAIVVCMSRRICVDLYDEIIRLRPEWHNDDDKLGVLKV  594
             R+  +A+DI++HFE R++++ GK+++V MSRRI VDLYDEIIRL+PEWH+DDD  GV+KV
Sbjct  540   RVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKV  599

Query  595   IMTGSAADGTEWQKHIRTKGKRKELADHFKDSESEFKIAIVRDMWLTGFDVPCLHTLYID  654
             +MTGS++D T  Q+HI  K +R  L  + KD + E+++ IVRDMWLTGFDVP +HT+YID
Sbjct  600   VMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYID  659

Query  655   KPMKGHGLMQAIARVNRVFRDKPGGLVVDYIGIAQDLKYALMNYTSSGGTGKPTYDIEDA  714
             KPMKGH LMQAIARVNRVF+DKPGGL+VDY+GIA+ LK AL +YT S + ++ + D + A
Sbjct  660   KPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDKA  718

Query  715   VNLMKSKYEAMKDFFYGHDYSKFFNGTNIEKMDVIPETLEFILN-QPDGKKRFVKLALEL  773
             V+LM  KY+ ++D +Y  DYSKF +  + E+   I++T+++++    D ++RF+K   EL
Sbjct  719   VELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTEL  778

Query  774   IKSYALSLPHEEAVKIREEVAFFTGVKAALYK-----NTEISGKPEDELNSAIKQIVSGA  828
              K++AL   +  A  + +E+AFF +VKA+L K     +   + K   E+++ I+Q+VS +
Sbjct  779   GKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQS  838

Query  829   VRTDGIIDVFGEAGLEKPDISILSEQFLEDVKNMKYKNLALETLKKILNDEIRAKFKNNL  888
             V T+++IDV+   GLE+PD+SILS++FL DV  +K KN+A+E L+++L++++++  K N 
Sbjct  839   VVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNA  898

Query  889   LQEKKFSEMIENAIKRYHNKAIDSAAVIQELIAIAKEIENAKRRGEELHLTEEELAFYDA  948
                K+FSEM+ N+I++Y++++I+++ VI+ELI +AK+I + ++RG+EL L  +E+AFYDA
Sbjct  899   TVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDA  958

Query  949   LSDNDSAQEILGTEILTEIARELTETLRNSVSIDWEVRETVRATLRVKIKRLLRKYGYPP  1008
             L  +++A+  +    L  IA+ELT T+++++S+DW  R++ +A +RV ++RLL+KYGYPP
Sbjct  959   LVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPP  1018

Query  1009  DKQQIAADLVLKQAETISKE  1028
             D Q++A + V+ QAE ++ +
Sbjct  1019  DLQKMAVEQVVEQAELMASN  1038

55) XF2739 in NC_002488


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  841 bits (3184),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 476/1034 (47%), Positives = 748/1034 (73%), Gaps = 33/1034 (3%)

Query  21    GYSIEREENIGPDGYRPERASHDEVVLKQRFVDAVARLNPGLPPEARQDAIRKVTQSELP  80
             +Y   + ++I+  G  PER S+ +VVL +R+  A+ ++N+++ P   + AI+ +T    P
Sbjct  22    SYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHPRFIEKAIHELTLEKSP  81

Query  81    SLLEENRRIHRLITEGVDVEYYAQDGTLTAGNVALIDFDHPQQNDWLAVNQFVVIADHYN  140
             +LLE+N  +H  + +G+++E Y ++G      V ++DF+HPQ+ND LAVNQF V+ ++Y 
Sbjct  82    NLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNNDFLAVNQFTVVNGDYT  141

Query  141   RRPDVVLFVNGLPLAVIELKAPGSINATLIAAFNQLQTYKEQIPALFNTNALLVTSDGMT  200
             +RPD+VLF+NGLP+ VIELK + +    +  +++QL+TYK +IP LF  N +LVTSDG+ 
Sbjct  142   KRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTSDGIN  201

Query  201   ARFGALSADLERFMPWRTTDGTDIAPKGVPELATLIEGICEPHRLLDLLRHFTVFRKTDA  260
             ++ G+L+A+ +RFM WR+ DG   ++ +++ L  LI+G+ +P  LLDL+R F +F+  + 
Sbjct  202   TKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPKTLLDLIRYFVLFQDDGK  261

Query  261   G-LAKIIAGYHQFHAVRQAINSTVAASSPQGNQRIGVIWHTQGSGKSLLMAFYAGQLVKH  319
             G ++KI+A+YHQ+ AV +A++ ++ ASS QG+ + GVIWHTQGSGKSL M F++G+L+  
Sbjct  262   GHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQGSGKSLTMVFFSGKLI--  319

Query  320   PAMANPTLVVLTDRNDLDDQLFTTFSQCSD-----LIRQTPVQAQSRDQVRKLLNRASGG  374
               + NPTLV++TDRNDLD+QL++TF +  +     L+RQTP QA++R +++ LL+  SGG
Sbjct  320   QMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGG  379

Query  375   VIFTTLQKFG-----DITEPLTTRRNVVVIADEAHRSQYGFKAKVDTKTGKISYGFAKYM  429
             ++FTT+QKF       I  +LT R+NV+V+ADEAHR+QYGF+AK D K   I YG+AKY+
Sbjct  380   IVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYL  439

Query  430   RDALPNASCIGFTGTPIEADDVNTPAVFGNYIDIYDISRAVEDGATVPIYYESRLARIAL  489
             RDALPNA+ +GFTGTP+ + D NT  VFGNYID+YD+++AV DG+TV IYYESR+  I+L
Sbjct  440   RDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRV--IPL  497

Query  490   DEAEKPQIDAEVNALTEADSEAEQERFKKKWATVETLVGSDKRLALIAKDIITHCEDRLA  549
             + ++  ++D   N +TE + E  ++R+K KW+ +E+L G+  R+  +AKDII H E R  
Sbjct  498   NLPQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQ  557

Query  550   ALDGKAMVVCMSRRICVALYDHIVALRPDWHSTDHKAGSLKIVMTGTASDPPQWRQHIGN  609
             A+ GK+M+V MSRRI V LYD+I+ L+P+WHS D+  G +K+VMTG++SDP   ++HIG 
Sbjct  558   AMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGP  617

Query  610   KarrdllaerardPKDPLKLVIVRDMWLTGFDAPCMHTMYLDKPMQGHGLMQAIARVNRV  669
             K RR +L  R +D +D L+LVIVRDMWLTGFD P MHTMY+DKPM+GH LMQAIARVNRV
Sbjct  618   KKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRV  677

Query  670   FRDKPAGLIVDYIGIAQNLRTALQQYSKNDQQHTGVDEAQAIALMMEKYQIVRDMYHGYD  729
             F+DKP+GLIVDY+GIA++L+ AL++Y+ +DQ +T++D  +A+ LM+ KY++++DM    D
Sbjct  678   FKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVELMLLKYDVIQDMLYNLD  737

Query  730   YHTAMSGTPQERLAMMGGAIEWilnlqqqlaaiaqTKEGKKEAHRRYQDavlalskafal  789
             Y    S    ER   ++ +++ ++ L               + ++R+  +V  L+KAFAL
Sbjct  738   YSKFNSEKKSERYYTISNTMDYVIGLG-------------EDERQRFIKTVTELGKAFAL  784

Query  790   asasDEARHIREDVGFFQAIRAALVKSADHSGGSEPQR-----DLAIQQIVSRAVVSTEI  844
              ++   A+++ ++++FF+A++A+LVK  + +  +  ++     +  I+Q+VS++VV+ ++
Sbjct  785   CATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDV  844

Query  845   VDILAASGINSPDISILSDAFLAEIQQMQRKHLALEALRKLLNDRIRSRSTVNLVQTKAF  904
             +D+  + G++ PD+SILSD FL +++ +++K++A+E L +LL+++++S    N   +K F
Sbjct  845   IDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRF  904

Query  905   SERLEGAVARYHANAITTAQVLQELIQLAKDIRAARQRGEASGLSDEEVAFYDALAENES  964
             SE L  ++ +Y++ +I T++V++ELIQLAKDI+  +QRG+  GL+ +E+AFYDAL  +E+
Sbjct  905   SEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHET  964

Query  965   AVQMMGDHTLRLIAHELLMRLRENVSVDWAHRDSARARMRVLVKRILRKYGYPPDLQNTA  1024
             A + M D  LR IAHEL   ++EN+SVDW+ RDSA+A+MRV V+R+L+KYGYPPDLQ+ A
Sbjct  965   AKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMA  1024

Query  1025  VQTVLQQAEAFSSQ  1038
             V+ V++QAE  +S+
Sbjct  1025  VEQVVEQAELMASN  1038

56) Dgeo_2012 in NC_008025


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  840 bits (3182),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 502/1054 (48%), Positives = 769/1054 (73%), Gaps = 34/1054 (3%)

Query  1     MAF-LSEAEVENALLDQLRALGYSIEREEDIGPDGHRPERESHDEVVLRKRFEDAVARLN  59
             M F ++E ++E+ +L+ L +L+Y   + ++I+  G  PER S+ +VVL+ R+E A+ ++N
Sbjct  1     MNFQFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKIN  60

Query  60    PGVPLEARHDAVRRVTQSELPSLLAENRRLHKLLTEGVDVEYYADDGVLTAGKARLIDFD  119
             +++     + A++ +T    P+LL +N  +H  L +G+++E Y D+G       +++DF+
Sbjct  61    SDIHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFE  120

Query  120   DPANNDWLAVNQFVVINGQYQRRPDVVVFVNGLPLAVIELKAPGNDQATLTGAFNQLQTY  179
             +P NND LAVNQF V+NG+Y +RPD+V+F+NGLP+ VIELK + N+   + ++++QL+TY
Sbjct  121   HPQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  180   KGEITQLFRTNALLVTSDGISARVGSLSADFERFMPWRTTDGREVAPKGAPELETLIEGV  239
             K  I QLF  N +LVTSDGI+++ GSL+A+++RFM WR+ DG   ++ + + L+ LI+G+
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGM  240

Query  240   FEHRRLLDLLRHFTVFGETGAGLI-KIIAGYHQFHAVRHAVERTVAASSAGGDRKAGVIW  298
             ++ + LLDL+R F +F + G G I KI+A+YHQ+ AV  AV+R++ ASS+ GD K+GVIW
Sbjct  241   LNPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIW  300

Query  299   HTQGSGKSLLMAFYAGLLVRHPALENPTLVVLTDRNDLDDQLFATFSMCRD-----LIRQ  353
             HTQGSGKSL M F++G L++   L+NPTLV++TDRNDLD+QL++TF   ++     L+RQ
Sbjct  301   HTQGSGKSLTMVFFSGKLIQ--MLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQ  358

Query  354   TPVQAEGREHLKTLLDRASGGVIFTTLQKFG-----EIDGPLTTRRNVVVIADEAHRSQY  408
             TP QAE R +LK+LL   SGG++FTT+QKF       I ++LT R+NV+V+ADEAHR+QY
Sbjct  359   TPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQY  418

Query  409   GFKAKVDAKTGEISYGFAKYLRDALPNASFIGFTGTPIEAGDVNTPAVFGHYIDIYDISR  468
             GF+AK D K   I YG+AKYLRDALPNA+F+GFTGTP+ + D NT  VFG+YID+YD+++
Sbjct  419   GFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQ  478

Query  469   AVEDGATVPIYYESRLARIELDEDEKPKidaeieeiledeeepareraKQKWATVEALVG  528
             AV DG+TV IYYESR+  ++L +     +D   ++I ED+EE  ++R K KW+ +EAL G
Sbjct  479   AVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAG  536

Query  529   ADKRLRLIAQDIVQHFEARVAALDGKAMIVCMSRRICVKLYNEIVKLRPGWHSDDDNAGA  588
             A  R+  +A+DI+QHFE+R  A+ GK+MIV MSRRI V LY+EI++L+P WHSDDD+ G 
Sbjct  537   AKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGV  596

Query  589   VKIVMTGAASDPPEWQKHIGNKarrdllarrardPKDPLKLVIVRDMWLTGFDAPCMHTM  648
             +K+VMTG++SDP   Q+HIG K RR +L +R +D +D L+LVIVRDMWLTGFD P MHTM
Sbjct  597   IKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTM  656

Query  649   YVDKPMRGHGLMQAIARVNRVFRDKPAGLIVDYIGIAQNLKNALAQYSPRDRENTGIDEA  708
             Y+DKPM+GH LMQAIARVNRVF+DKP+GLIVDY+GIA++LK+AL +Y+  D+ +T+ID  
Sbjct  657   YIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTD  716

Query  709   EAIAVMLEKYEVVRDMFHGFDYRSGLNGSPQERLAMMAGAIEWILERQQQWAAQETTPEG  768
              A+ +ML KY+V++DM+  +DY    +    ER   ++ +++ ++   ++          
Sbjct  717   KAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGED----------  766

Query  769   KKAAHRRFGDavlalskayalasasDPARAIREEVGFFQAIRAALIK-----SSTGSDAN  823
                 ++RF  +V  L+KA+AL ++   A+ + +E++FF+A++A+L+K         +   
Sbjct  767   ---ERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKT  823

Query  824   PQAREWAIQQIVSRAVVSTEIVDILTAAGIKSPDISILSDDFLAEVQQMEKKNLALEALR  883
             P   E  I+Q+VS++VV+ +++D+  + G+  PD+SILSDDFL +V+ + +KN+A+E L 
Sbjct  824   PAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLN  883

Query  884   KLINDGIRSRAKANVVQTRAFSQRLEDAVARYHANAITTAEVLQELIHLAKDIRAARQRG  943
             +L+++ ++S  K+N   ++ FS+ L +++ +Y++ +I T+ V++ELI+LAKDI+  +QRG
Sbjct  884   RLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRG  943

Query  944   EESGLSDEEIAFYDALAENESAVQVMGDEKLRVIAHELLVNLRENVSVDWAHRESararl  1003
             +E GL+ +EIAFYDAL  +E+A + M D KLR IAHEL   ++EN+SVDW+ R+SA+A++
Sbjct  944   NELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKM  1003

Query  1004  rvlvkrilrkYGYPPDLQDAAVQTVLQQAEALSA  1037
             RV V+R+L+KYGYPPDLQ  AV+ V++QAE +++
Sbjct  1004  RVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMAS  1037

57) Neut_0537 in NC_008344


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  840 bits (3180),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 498/1077 (47%), Positives = 765/1077 (72%), Gaps = 51/1077 (4%)

Query  1     MAF-LSEAAVEQALLDQLRALGYSIEQEEIIGPDGKQSEHESHDEVVLKKRFEDAVARLN  59
             M F ++E  +EQ +L+ L +L+Y   + + I+  G  +E+ S+ +VVL  R+E A+ ++N
Sbjct  1     MNFQFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKIN  60

Query  60    PGLPLEARQDAVHKVMQSELPSLLEENRRLHKLLTEGVDVEYYTNDGTLTAGKVALINFE  119
             +++     + A+H +     P+LLE+N  +H  L +G+++E Y ++G      V +++FE
Sbjct  61    SDIHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFE  120

Query  120   HPEQNDWLAVSQFVVINDQNNRRPDVVVFVNGLPLGVIELKAPGNAGAHLLGAFNQLQTY  179
             HP++ND LAV+QF V+N++  +RPD+V+F+NGLP+ VIELK + N    + ++++QL+TY
Sbjct  121   HPQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  180   KQQIPQLFNTNALLVTSDGITARVGSLSADLERFMPWRTTDGTRIEPKGMPEMATLIEGV  239
             K +IPQLF  N +LVTSDGI ++ GSL+A+ +RFM WR+ DG    + +++ +  LI+G+
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGM  240

Query  240   FEQGRFLDLLRHFTVFGETGGGLI-KIIAGYHQFHAVKKAVVSTLRASQPSDRLGVAEDP  298
             ++   +LDL+R F +F + G G I KI+A+YHQ+ AV+KAV  +L AS            
Sbjct  241   LNPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSG----------  290

Query  299   AVYGLPSVKVQPPGDHKAGVIWHTQGSGKSLLMAFYAGLLVFDSRMANPTLVVLTDRNDL  358
                          GD K+GVIWHTQGSGKSL M F++G L+    + NPTLV++TDRNDL
Sbjct  291   ------------QGDGKGGVIWHTQGSGKSLTMVFFSGKLI--QMLNNPTLVIVTDRNDL  336

Query  359   DDQLFATFAMCKD-----LLRQTPVQAQDREHLRTLLNRASGGVIFTTLQKFSPAADETD  413
             D+QL++TF   K+     LLRQTP QA+ R +L++LL+  SGG++FTT+QKF P  +ET 
Sbjct  337   DNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETI  396

Query  414   FPALTNRSNIVVIADEAHRSQYGFRAKVASKTGEIAYGFAKYLRDALPHASFIGFTGTPI  473
              +ALT+R N++V+ADEAHR+QYGF AK   K   I YG+AKYLRDALP+A+F+GFTGTP+
Sbjct  397   MAALTERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPV  456

Query  474   EAADVNTPAVFGHYIDIYDISRAVEDGATVPIYYESRLARIELDEDEKPHIDAEIEALLE  533
              ++D NT  VFG+YID+YD+++AV DG+TV IYYESR+  ++L +    ++D   + + E
Sbjct  457   ASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITE  514

Query  534   DEVEASAERTKQKWSTVEALVGSDKRLALVAADLVQHFEDRVAALSGRAMMVCMSRRICV  593
             D+ E   +R K KWS +EAL G+  R+  +A D++QHFE R  A+ G++M+V MSRRI V
Sbjct  515   DQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAV  574

Query  594   ALYDQIIKLCPDWHSNDDNAGSIKIVMTGTASDPVEWQQHIGNkarrdllakrardPQDP  653
              LYD+II+L P+WHS+DD+ G IK+VMTG++SDP   Q+HIG K RR +L KR +D +D 
Sbjct  575   DLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDE  634

Query  654   LRLVIVRDMWLTGFDAPSIHTMYIDKPMRGHGLMQAIARVNRVFRDKPAGLIVDYIGIAQ  713
             L+LVIVRDMWLTGFD PS+HTMYIDKPM+GH LMQAIARVNRVF+DKP+GLIVDY+GIA+
Sbjct  635   LQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAE  694

Query  714   NLKSALAQYSKPDQDKTGIDEREAVAVLLEKVEIVRDMFFGFDYQTGLGGTPSERLAMMA  773
             +LK AL +Y+ +DQ +T+ID   AV ++L K ++++DM++ +DY    +   SER   ++
Sbjct  695   SLKEALKEYTESDQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTIS  754

Query  774   SAIEWILDKQQQWAAAEKTPEASRQARRRFADGVLSLSKAFALVASSDEARGIREEVGFF  833
             ++++ +++              + + R+RF   V  L+KAFAL A+   A+ + +E++FF
Sbjct  755   NTMDYVIG-------------LGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFF  801

Query  834   QAIRAALVK-----TAGGAGAIRQDRELAIQQIVSRAVVSTEIVDILAAAGIQTPDISIL  888
             +A++A+LVK       G +     + E  I+Q+VS++VV+ +++D+  + G++ PD+SIL
Sbjct  802   KAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSIL  861

Query  889   SDEFLLEVQQMEKKNLGLEALRKLLNDSIRSRTRTNVVETRAFTERLEDAIARYHANAIT  948
             SD+FL +V+ + +KN+++E L +LL++ ++S  +TN   ++ F+E L ++I +Y++ +I 
Sbjct  862   SDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIE  921

Query  949   TAEVLQELINLAQDIRAARNRGEEQGLSLDEIAFYDALAENESAVQVMGDDNLRVIAHEL  1008
             T+ V++ELI+LA+DI+  ++RG+E GL+ DEIAFYDAL  +E+A + M D +LR IAHEL
Sbjct  922   TSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHEL  981

Query  1009  LVSLKENIAVDWAHRESararlrvlvkrilrkYGYPPDLQDAAVQTVLQQAEALSSE  1065
               ++KEN++VDW+ R+SA+A++RV V+R+L+KYGYPPDLQ  AV+ V++QAE ++S+
Sbjct  982   TKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

58) CJA_3632 in NC_010995


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  839 bits (3176),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 489/1076 (46%), Positives = 769/1076 (72%), Gaps = 53/1076 (4%)

Query  3     KLNESAIEAFAITLLEQQGYTAIHGLDIAPDGDTPERSDYAQVLLTERLDKAIRRINPRL  62
             ++NE  +E   +  LE  +Y    G +I+  G +PER    +V+L ERL+KA+R+IN+ +
Sbjct  4     QFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDI  63

Query  63    SEDVLLQARKDVERVQSQDLLANNEAFHRLLTEGVPV-SIQQDGNERGERVWLIDFDRPE  121
                 + +A  ++   +S +LL NN +FH  L +G+ +   +++G+   E V ++DF++P+
Sbjct  64    HPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQ  123

Query  122   NNEFAVISQFTVIENHQNKRPDLVLFVNGVPLVVIELKNAGDENASVKSAFKQIETYKAL  181
             NN+F  ++QFTV++ +  KRPD+VLF+NG+P+VVIELKN+ +E  +V  ++ Q+ETYK  
Sbjct  124   NNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  182   IPSLFNSNAFIVISDGLEAKAGSISSGLSRFMHWKTADGKAEASKLVSQLETLIVGMLHP  241
             IP LF  N  +V SDG+++KAGS+++   RFM W++ DG +E+S  ++ L+ LI GML+P
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNP  243

Query  242   KTLLDLIRHFIVFEKSSKEDPVSGLITINTVKKLAAYHQYYAVNAAVASTLRAADMDGHS  301
             KTLLDLIR F++F+  +K          +  K LAAYHQYYAVN AV  +L         
Sbjct  244   KTLLDLIRYFVLFQDDGKG---------HISKILAAYHQYYAVNKAVDRAL---------  285

Query  302   MIHESPASYGLPGVSHQPKGDRKAGVVWHTQGSGKSLSMVFYTGKIVLALNNPTVLVITD  361
                       L++ ++   GD K+GV+WHTQGSGKSL+MVF++GK++  LNNPT++++TD
Sbjct  286   ----------LASSGQ---GDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVIVTD  332

Query  362   RNDLDDQLFDTFA-----SSKQLLRQEPVQAQDRNHLKELLRVASGGVVFSTIQKFQPED  416
             RNDLD+QL+ TF      S+K LLRQ P QA+ R++LK LL V SGG+VF+T+QKF+PE+
Sbjct  333   RNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQ  392

Query  417   GN-VYEQLSTRNNIVVIADEAHRTQYGFSAKTVDEKNSSGEVIGKKVVYGFAKYLRDALP  475
              + +   L+ R+N++V+ADEAHRTQYGF+AK  D+K       G  + YG+AKYLRDALP
Sbjct  393   NETIMAALTERKNVIVMADEAHRTQYGFNAKY-DDK-------GEGIKYGYAKYLRDALP  444

Query  476   NATYLGFTGTPIEKADANTPAVFGNYVDIYDIAQAVEDGATVRIFYESRLAKVQLSEEGK  535
             NAT++GFTGTP+  +D NT  VFGNY+D+YD++QAV DG+TV+I+YESR+  ++L+ ++ 
Sbjct  445   NATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLP-QSL  503

Query  536   KLIAELDEELGEMELNETQKAKAKWTKMEALIGSEKRIRNIAKDIVTHFEARQKVFDGKG  595
              L    ++   + E +  Q+ K+KW+++EAL G+  R+  +AKDI+ HFE+RQ+   GKG
Sbjct  504   DLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKG  563

Query  596   MVVSMSRRIAAELYAEIIKLRPEWYSDDLTKGVIKVVMTAASSDGPLLAKHHTTKEQRKL  655
             M+V+MSRRIA +LY EII+L+PEW SDD  KGVIKVVMT++SSD   + +H   K +R +
Sbjct  564   MIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSV  623

Query  656   LAERMKDDDDPLKLVIVRDMWLTGFDAPGMHTLYIDKPMKGHNLMQAIARVNRVHKDKPG  715
             L  RMKD +D L+LVIVRDMWLTGFD P+MHT+YIDKPMKGHNLMQAIARVNRV KDKPG
Sbjct  624   LEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPG  683

Query  716   GLVVDYLGIAADLKEALSFYSEAGGKGDPTLAQEQAVTLMLEKLEVVSALFDGFAYESYF  775
             GL+VDY+GIA  LKEAL  Y+E+ ++++ ++  ++AV LML K +V+  ++  + Y  + 
Sbjct  684   GLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFN  742

Query  776   AADTSQKLSMILAAEEHILSL-DDGKKRYIKEVTELSLAYAIAIPHEQAIDVTDEVGFFQ  834
             +   S++   I  + + +++L +D ++R+IK VTEL+ A+A+   +  A ++ DE++FF+
Sbjct  743   SEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFK  802

Query  835   AVKARLVK-FDSTEDGSGN---EDVETTIRQVIDKALVSDKVIDVFDAAGIKKPDISILS  890
             AVKA LVK +++  +G       +VE+ I Q++ +++V++ VIDV+++ G+ +PD+SILS
Sbjct  803   AVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILS  862

Query  891   EEFLAELKDYQHKNIALEVLKKILNDELKIRLKKNLVESKKLIEMLEEAIKKYHNKILTA  950
             ++FL ++ + ++KN+A+E+L+++L++++K  +K N   SK++ EML ++I+KY+++ + +
Sbjct  863   DDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIET  922

Query  951   AEVMDALISISKEITASDETAKQMGLSDFEYAFYTAVADNDSAKELMQQDTLRELAVVLT  1010
             + V++ LI ++K+I   ++ ++++GL+  E AFY A+  +++AK  M++  LR +A  LT
Sbjct  923   SKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELT  982

Query  1011  QRVRENASIDWTIKESVKAKLKVIVKRTLRQFGYPPDMQLLATETVLRQAEIIANE  1066
             + V+EN S+DW+ ++S KAK++V V+R L+++GYPPD+Q +A E V+ QAE++A++
Sbjct  983   KTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

59) Rfer_4010 in NC_007908


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  839 bits (3177),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 489/1075 (46%), Positives = 766/1075 (72%), Gaps = 53/1075 (4%)

Query  2     LTESAIETFAIKLFERLGYVYLHGPDIAPDSDGPERSSYAEVLLPGRLAQAAGRINHKLP  61
             + E  +E   +  +E L+Y Y  G +I+  + +PER S  +V+L  RL +A  +IN  + 
Sbjct  5     FNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIH  64

Query  62    RDVVEMALKEVQRAHSPDLLASNEAFHRLLTEGVPVSM-QKDGDTRGERVWLIDFARPEN  120
                +E A+ E+    SP+LL +N +FH  L +G+ +   + +G++  E V ++DF +P+N
Sbjct  65    PRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQN  124

Query  121   NEFVVANQFTVIENHQKKRPDLVLFVNGIPLVVIELKNAADENATLKSAYQQIETYKQAI  180
             N+F+  NQFTV++ +  KRPD+VLF+NG+P+VVIELKN+++E   +  +Y+Q+ETYK  I
Sbjct  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  181   PSLFTANALVVISDGLEAKAGSISASLSRFMAWKSADGKAEASHLVSQLEALILGMLNQG  240
             P LFT N ++V SDG+++KAGS++A+  RFM+W+S DG +E+S  ++ L+ LI GMLN  
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPK  244

Query  241   TLLDLVRHFIVFEKGSKEDPNTGQITISTIKKLAAYHQYYAVNAAVASTLRAADMGGPLS  300
             TLLDL+R F++F+ ++K     G+I+    K LAAYHQYYAVN AV  +L          
Sbjct  245   TLLDLIRYFVLFQDDGK-----GHIS----KILAAYHQYYAVNKAVDRAL----------  285

Query  301   VRENPASYGLPGIADQPKSDMKAGVVWHTQGSGKSLSMVFYTGKIVLTLDNPTVLVITDR  360
                         +A   ++D K+GV+WHTQGSGKSL+MVF++GK++  L+NPT++++TDR
Sbjct  286   ------------LASSGQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVIVTDR  333

Query  361   NDLDDQLFNTFA-----ASKQLLRQEPVQAKDREHLKALLKVAAGGVVFSTIQKFQPDEG  415
             NDLD+QL++TF      ++K LLRQ P QA  R +LK+LL V +GG+VF+T+QKF+P++ 
Sbjct  334   NDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQN  393

Query  416   N-VYDQLSNRPNIVVIVDEAHRTQYGFAAKTVDEKNADGMVIGKKVVYGFAKYLRDALPR  474
             + +   L++R N++V+ DEAHRTQYGF AK  D+K       G  + YG+AKYLRDALP 
Sbjct  394   ETIMAALTERKNVIVMADEAHRTQYGFNAKY-DDK-------GEGIKYGYAKYLRDALPN  445

Query  475   ATYLGFTGTPIEKTDVNTPAVFGNYVDIYDIAQAVEDGATVRIYYESRLAKVSLSEEGKK  534
             AT++GFTGTP+  TD NT  VFGNY+D+YD++QAV DG+TV+IYYESR+  ++L++ +  
Sbjct  446   ATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQ-SLD  504

Query  535   LIAeldeeleqdeltetqKPKAKWTKMEALIGSEQRVKNIARDIVGHFEARQEVFAGKGM  594
             L    ++  E++E    Q+ K+KW+++EAL G+  RV  +A+DI+ HFE+RQ+   GKGM
Sbjct  505   LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGM  564

Query  595   VVSMSRRIAADLYDEIIKLRPDWHADELSKGVIKVVMTAASSDGPKLAKHHTTKEQRKLL  654
             +V+MSRRIA DLYDEII+L+P+WH+D+  KGVIKVVMT++SSD   + +H   K +R +L
Sbjct  565   IVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVL  624

Query  655   AERMKAEDDPLKLVIVRDMWLTGFDAPSMHTLYIDKPMKGHNLMQAIARVNRVYKDKPGG  714
               RMK  +D L+LVIVRDMWLTGFD PSMHT+YIDKPMKGHNLMQAIARVNRV+KDKPGG
Sbjct  625   EKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGG  684

Query  715   LVVDYLGIAADLKEALSFYSDAGGKGDPTLLQEQAVGLMLEKLEVISALYHGFAYEHYFG  774
             L+VDY+GIA  LKEAL  Y+++ ++++ ++  ++AV LML K +VI  +   + Y  + +
Sbjct  685   LIVDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNS  743

Query  775   ANTAQKLSLILAAEEHILGL-DDGRKRYINEVTALSQAFAIAIPHEQAMDVKDEVGFFQA  833
              + +++   I  + + ++GL +D R+R+I+ VT L++AFA+   +  A +++DE++FF+A
Sbjct  744   EKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKA  803

Query  834   VKARLVKY----DSVEGERSNEEIETTIRQVIDQALVSEKVIDVFDAAGIKKTDISILSD  889
             VKA LVK           ++  E+E+ I Q++ Q++V+E VIDV+++ G+ + D+SILSD
Sbjct  804   VKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSD  863

Query  890   EFLAELKGYEHKNVALEVLKKLLNDELKIRAKRNLVQSRSLMEMLEASIKKYHNKILTAA  949
             +FL ++ G  +KNVA+E+L++LL++++K   K N   S+ + EML  SI+KY+++ + ++
Sbjct  864   DFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETS  923

Query  950   EVMDELIKVSKEIVAADDEARHMGLSDFEYAFYTAVANNDSARELMQQDKLRELAVVLTQ  1009
              V++ELI+++K+I   ++ + ++GL+  E AFY A+ ++++A+  M++ KLR +A  LT+
Sbjct  924   KVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTK  983

Query  1010  RVRENASIDWTIKENVRAKLKVIVKRTLRQFGYPPNMELLATETVLKQAEMIANE  1064
              V+EN S+DW+ +++ +AK++V V+R L+++GYPP+++ +A E V+ QAE++A++
Sbjct  984   TVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

60) LFE_0359 in NC_017094


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  838 bits (3172),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 486/1041 (47%), Positives = 754/1041 (73%), Gaps = 32/1041 (3%)

Query  4     LTESDLEQIVLGWFGELGYTILHGPEIAPEASLSERSSYSDPLLPAHVQIALSRLNPSLP  63
             + E DLEQ+VL W+  L+Y    G EI+  +  +ER S  D +L  +++ AL ++N+ + 
Sbjct  5     FNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIH  64

Query  64    PEALDDAFRKLTRIDSPTLIQRNHAFHRFLVEGIPVE-YRTQDRIVSDSARLFDLADLEN  122
             P  ++ A++ LT   SP L++ N +FH  L++GI +E Y  +++ + +  ++ D+ + +N
Sbjct  65    PRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQN  124

Query  123   NDWLVVNQFTVVEGHHNRRPDIVVFVNGIPLGVIELKNPGDEKATIWSAFNQIQTYKEEI  182
             ND L VNQFTVV+G+  +RPDIV+F+NG+P+ VIELKN+ +E   +  +++Q++TYK  I
Sbjct  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  183   PSLFAFNELLVISDGYEARIGSLSSNKERFAPWRTIEGEEEARMR-PPIEVLTKGVFRKE  241
             P LF+FNE+LV SDG +++ GSL++N +RF  WR+ +GE E+    ++++VL +G++   
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPK  244

Query  242   HLLDLVSHFVVFEAETDGSLIKKLAGYHQFHAVNKAVETTLTASRPKGDRRIGVIWHTQG  301
              LLDL+  FV+F+ +  G + K LA+YHQ+ AVNKAV+ +L AS  +GD + GVIWHTQG
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQG  304

Query  302   SGKSLTMVFYAGKVVLHPAMENPTLLVLTDRNDLDGQLFGTFSRCQE-----ILRQTPVQ  356
             SGKSLTMVF++GK++    ++NPTL+++TDRNDLD QL++TF + +      +LRQTP Q
Sbjct  305   SGKSLTMVFFSGKLI--QMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQ  362

Query  357   ADARQRLRELLRVASGGVVFTTIQKFFPDPERDGDTFPRLSDRRNIVVIADEAHRSQYDF  416
             A++R+ L+ LL V SGG+VFTT+QKF  +PE++    + L++R+N++V+ADEAHR+QY+F
Sbjct  363   AETRKELKSLLSVESGGIVFTTMQKF--EPEQNETIMAALTERKNVIVMADEAHRTQYGF  420

Query  417   MD-----------GFARHMRDALPNASFIGFTGTPVELSDRNTKAIFGDYISVYDIQRAV  465
                          G+A+ +RDALPNA+F+GFTGTPV  +D+NT+ +FG+YI VYD+ +AV
Sbjct  421   NAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV  480

Query  466   DDGATVPIYYESRLARLDLPEAEKPHIDQefeevteteeeerkekLKSKWAALEAVVGTE  525
              DG+TV IYYESR+  L+LP++   ++D+ ++++TE +EE+ K++LKSKW+ +EA+ G+ 
Sbjct  481   ADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAK  538

Query  526   KRIGLIAKDIVDHFEKRLEALDGKAMIVGMSRRICLDLHKALITLRPEWYDKDDTKGILK  585
              R+  +AKDI++HFE R +A+ GK+MIV MSRRI +DL   +I L+PEW   DD KG++K
Sbjct  539   PRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIK  598

Query  586   VVMTGSATDPVEWQEHIRNKPRREKLANRFRNPNDPFRIVIVRDMWLTGFDAPSLHTMYL  645
             VVMTGS++DP   Q HI  K RR  L +R ++ ND +++VIVRDMWLTGFD PS+HTMY+
Sbjct  599   VVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYI  658

Query  646   DKPMRGHGLMQTIARVNRVFKDKPGGLIVDYLGIAHELKTAMATYTQSGGSGKPTLDQDD  705
             DKPM+GH LMQ+IARVNRVFKDKPGGLIVDY+GIA+ LK A+  YT+S + ++ ++D D 
Sbjct  659   DKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDK  717

Query  706   AVAALLKHYEICCGLFHGFDWSS-GKQSPEKRLSLLPFAQDHILS-QENGQKRLAKAVSD  763
             AV  +L  Y++  +++  +D S    +    R   ++ + D +++  E+ ++R+ K+V++
Sbjct  718   AVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTE  777

Query  764   LSKAFALAVPHPRGIEIRDDVRFFQEVNAVLTK--SGPSSG---RDPGDMDHAIRQIVSG  818
             L+KAFAL   +P + E+ D++ FF+ V+A L K    P  G   + P++++  I Q+VS 
Sbjct  778   LGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQ  837

Query  819   AIVSEGVIDIFEAAGLMRPDLSILSEEFLADVRNMPQKNLAVELLRKLLDNEIKTRSRKN  878
             ++V+E+VID++++ GL +PDLSILS++FL DV  + QKN+AVELL +LL  ++K+  + N
Sbjct  838   SVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTN  897

Query  879   VVLSRSFSEMLEKTLRAYHNRAIETVQVIEELITLAGEIRKAEKRGEDLGLSEDEVAFYD  938
               +S+ FSEML +++  Y++R+IET +VIEELI LA +I++ ++RG++LGL+ DE+AFYD
Sbjct  898   ATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYD  957

Query  939   ALETNDSAVKILGDKVLCEIARELVQTIRNNVTVDWSIREDRRAHIKRLVKRILKKNGYP  998
             AL ++++A K + DK L  IA+EL +T+++N++VDWS R+  +A ++  V+R+LKK GYP
Sbjct  958   ALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYP  1017

Query  999   PDKQEKATETVLEQAETLCQD  1019
             PD Q  A E V+EQAE +  +
Sbjct  1018  PDLQKMAVEQVVEQAELMASN  1038

61) GYY_04440 in NC_015847


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  836 bits (3166),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 487/1040 (47%), Positives = 767/1040 (74%), Gaps = 25/1040 (2%)

Query  6     EDTVEQGTLELLKSIGYEIISGPEIAPDGTSPERKDYSEVVLVSRLRDAISRINPKVPVE  65
             ED +EQ  LE L S++Y+   G EI+  G +PERK   +VVL  RL  A+ +IN+ +   
Sbjct  7     EDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHPR  66

Query  66    AREDALRKVLRLE-NPNLLMNNEKFHEFIFKGIDVE-YPIDGRVKGDKVYLLD-KDPLKN  122
               E A++  L LE +PNLL NN  FHE +++GI++E Y  +G+   + V ++D  +P +N
Sbjct  67    FIEKAIHE-LTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNN  125

Query  123   EFVAVNQFTIIQNNKNRRPDIVIFVNGLPLSVIELKNPTKEDATIWSAYNQIQTYKSEIS  182
             +F+AVNQFT+++ +  +RPDIV+F+NGLP+ VIELKN+T+E   +  +Y+Q++TYK  I+
Sbjct  126   DFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  183   ELFKYNELILISDGTESRIGTLSSNKEWFLPWKSIDGTSEINNGVSQLKISILGMFDKTR  242
             +LF +NE+++ SDG +++ G+L++N ++F+ W+S DG +E +++++ L + I GM++   
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPKT  245

Query  243   FIDIIKNFIVFKKDGK-DIIKVIAGYHQYFAANRAIEKTI--EAVSGNRRCGVVWHTQGS  299
             ++D+I+ F++F+ DGK +I K++A+YHQY+A N+A+++++   +  G+ + GV+WHTQGS
Sbjct  246   LLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQGS  305

Query  300   GKSLTMAFYAGKLAITPELRNPTIVVVTDRNDLDDQLFGTFASCID-----VLKQTPVQA  354
             GKSLTM F++GKL     L NPT+V+VTDRNDLD+QL++TF    +     +L+QTP QA
Sbjct  306   GKSLTMVFFSGKL--IQMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQA  363

Query  355   KNAEDLKEQLKVVSGGVIFTTMQKFSVDELNAKYPMLSDRENIIVMADEAHRSQYGLKAK  414
                 +LK  L V SGG++FTTMQKF  ++ ++  + L++R N+IVMADEAHR+QYG++AK
Sbjct  364   ETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFNAK  423

Query  415   SVARNGEVGITYGFAKYLRDALPNASFIGFTGTPIDFEDKSTRSIFGEYIDIYDVRRAVA  474
                +    GI YG+AKYLRDALPNA+F+GFTGTP+   DK+T+ +FG+YID+YD+ +AVA
Sbjct  424   YDDKGE--GIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVA  481

Query  475   DGRTVKIYYESRVAKIGIENDVLAKLDAefeevtefeeNYKKEKLKGKWAQLEAIVGSND  534
             DG TVKIYYESRV  + + + +   LD  ++++TE +E+  K++LK+KW+++EA+ G++ 
Sbjct  482   DGSTVKIYYESRVIPLNLPQSL--DLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKP  539

Query  535   RISKVAQDIVNHFEKREETLTGKAIVVCMSRRICVDLYDEIIRLRPEWHNDDDKLGVLKV  594
             R+  +A+DI++HFE R++++ GK+++V MSRRI VDLYDEIIRL+PEWH+DDD  GV+KV
Sbjct  540   RVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKV  599

Query  595   IMTGSAADGTEWQKHIRTKGKRKELAEHFKDSESEFKIAIVRDMWLTGFDVPCLHTLYID  654
             +MTGS++D T  Q+HI  K +R  L  + KD + E+++ IVRDMWLTGFDVP +HT+YID
Sbjct  600   VMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYID  659

Query  655   KPMKGHGLMQAIARVNRVFRDKPGGLVVDYIGIAQDLKYALVNYTSNGGTGKPTYDIEDA  714
             KPMKGH LMQAIARVNRVF+DKPGGL+VDY+GIA+ LK AL +YT +++ ++ + D + A
Sbjct  660   KPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYT-ESDQAQTAIDTDKA  718

Query  715   VNLMKSKYEAMKDFFYGHDYSKFFNGTNIEKMDVIPETLEFILN-QPDGKKRFVKLALEL  773
             V+LM  KY+ ++D +Y  DYSKF +  + E+   I++T+++++    D ++RF+K   EL
Sbjct  719   VELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTEL  778

Query  774   IKSYALSLPHEEAIKIREEVAFFTGVKAALYK-----NTEISGKPEDELNSAIKQIVSGA  828
              K++AL   +  A  + +E+AFF +VKA+L K     +   + K   E+++ I+Q+VS +
Sbjct  779   GKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQS  838

Query  829   VRTDGIIDVFGEAGLEKPDISILSEQFLEDVKNMKYKNLALETLKKILNDEIRAKFKNNL  888
             V T+++IDV+   GLE+PD+SILS++FL DV  +K KN+A+E L+++L++++++  K N 
Sbjct  839   VVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNA  898

Query  889   LQEKKFSEMIENAIKRYHNKAIDSAAVIQELIAIAKEIENAKRRGEELHLTEEELAFYDA  948
                K+FSEM+ N+I++Y++++I+++ VI+ELI +AK+I + ++RG+EL L  +E+AFYDA
Sbjct  899   TVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDA  958

Query  949   LSDNDSAKEILGTEVLSEIARELTDTLRKNISIDWEVRETVRATLRVRVKRLLKKYGYPP  1008
             L  +++AK  +    L  IA+ELT T++ N+S+DW  R++ +A +RV V+RLLKKYGYPP
Sbjct  959   LVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPP  1018

Query  1009  DKAQIAADLVLKQAETISKE  1028
             D  ++A + V+ QAE ++ +
Sbjct  1019  DLQKMAVEQVVEQAELMASN  1038

62) TREAZ_2426 in NC_015577


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  836 bits (3164),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 509/1099 (47%), Positives = 767/1099 (70%), Gaps = 69/1099 (6%)

Query  1     MPF-LTESDIEQYALELLEAQGYDCLYGPDIAPGGHNPLRKSFDEVLLFDMLEAAVARIN  59
             M F + E D+EQ  LE LE+ +YD   G +I+  G  P RKS  +V+L + LE A+ +IN
Sbjct  1     MNFQFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKIN  60

Query  60    PNLSRELREDAVRQLARLRSADLMVNNETFHRFFTEGVPVTS-VSGGYERGDRVMLVDFE  118
             +++   + E A+++L+  +S++L+ NN TFH  + +G+ +      G    + V +VDFE
Sbjct  61    SDIHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFE  120

Query  119   HPETNDFTAVNQFTIIENHINKRPDIILFINGIPLVVIELKNAADENADIASAWKQIQTY  178
             HP+ NDF AVNQFT+++ +  KRPDI+LFING+P+VVIELKN+++E  ++  +  Q++TY
Sbjct  121   HPQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  179   KEAIPSLFTFNSFAIISDGLEARAGTISSGQSRFMAWKSADGRKDASGHTGQIETLIKGM  238
             K  IP LFTFN   + SDG++++AG++++   RFM+W+S DG  ++S+  + ++ LI+GM
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGM  240

Query  239   LNTQTLPDLIRHFIVFEKTRREDSKGITAVETVKKLAAYHQYYAVNKAVESTLRASGYVK  298
             LN +TL DLIR F++F+    +D+KG    +  K LAAYHQYYAVNKAV+ +L       
Sbjct  241   LNPKTLLDLIRYFVLFQ----DDGKG----HISKILAAYHQYYAVNKAVDRAL-------  285

Query  299   KSKGIHKGIGAESENAAAEDPESYGLPGVKTQPLRDRKGGVIWHTQGSGKSLSMVFFTGK  358
                     +++ ++  +                    KGGVIWHTQGSGKSL+MVFF+GK
Sbjct  286   --------LASSGQGDG--------------------KGGVIWHTQGSGKSLTMVFFSGK  317

Query  359   IILAMDNPTVVVITDRNDLDDQLFDTF-----SASKQLLRQEPVQAESRGQLKELLKVVS  413
             +I  ++NPT+V++TDRNDLD+QL+ TF      ++K LLRQ P QAE+R +LK LL V S
Sbjct  318   LIQMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVES  377

Query  414   GGVVFTTIQKFQPEDGSNLYEELSKRENIIVIADEAHRSQYGFTAKTLDEKNEAGEVIGK  473
             GG+VFTT+QKF+PE+   +   L+ R N+IV+ADEAHR+QYGF AK  D+K E+      
Sbjct  378   GGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFNAK-YDDKGEG------  430

Query  474   KTVYGFAKYLRDALPNATYLGFTGTPIESADVNTPAVFGNYVDIYDIAQAVEDGATVRIY  533
                YG+AKYLRDALPNAT++GFTGTP+ S+D NT  VFGNY+D+YD++QAV DG+TV+IY
Sbjct  431   -IKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIY  489

Query  534   YETRLAKISLSDEGKRLIQEFDDDLEMTELAETQKAQAKWAQLEALVGSSGRIKKIALDI  593
             YE+R+  ++L+ ++  L + ++D  E  E    Q+ ++KW+++EAL G+  R+  +A DI
Sbjct  490   YESRVIPLNLP-QSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDI  548

Query  594   VTHFEQRQTVLNGKAMIVAMSRRIAAALYEEITVLRPEWHNSDLDKGSIKVVMTSSSSDG  653
             + HFE RQ  ++GK+MIV+MSRRIA  LY+EI  L+PEWH+ D DKG IKVVMT+SSSD 
Sbjct  549   IQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDP  608

Query  654   PEISKHHTTKDQRRKLSDRMKNPHDELRLVIVRDMWLTGFDVPALHTLYIDKPMRGHNLM  713
               + +H   K +R  L  RMK+ +DEL+LVIVRDMWLTGFDVP++HT+YIDKPM+GHNLM
Sbjct  609   TSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLM  668

Query  714   QAIARVNRVYLDKKGGLIVDYLGIASDLKDALSFYSASGGRGDPAETQEQAVSLMLEKLE  773
             QAIARVNRV+ DK GGLIVDY+GIA  LK+AL  Y+ S ++++ A   ++AV LML K +
Sbjct  669   QAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVELMLLKYD  727

Query  774   VVSQLFHGFDYSPYFSAGTGQKLSLILAAEEHILQ-QEDGRRRFLDQVTALSQAFAIAVP  832
             V+ +++  +DYS + S   +++   I  + + ++   ED R+RF+  VT L++AFA+   
Sbjct  728   VIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCAT  787

Query  833   HDKAMDVKDEVAFFQAVKARLAKFDGPASDETVSGKSSGASAQTASSLETAIRQIVDQAL  892
             +  A +++DE+AFF+AVKA L K+  P+ +        G + +T++ +E+ I Q+V Q++
Sbjct  788   EPTAQELNDEIAFFKAVKAGLVKLLQPPKE--------GKTRKTPAEVEAEINQLVSQSV  839

Query  893   VTSRVIDVYEAAGIKKPDISILSEEFLMDVKNMEHKHLAMEVLRKLLADEIRARLKTNLV  952
             VT  VIDVY++ G+ +PD+SILS++FL DV  + +K++A+E+L +LL +++++ +KTN  
Sbjct  840   VTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNAT  899

Query  953   EGKTLMEMLENSIKNYQNKIVTAAEVIDELISLARDIHKRDTAFEELKLTEYEYAFYTAV  1012
              +K + EML NSI++Y+++ + ++ VI+ELI LA+DI + +   +EL L   E AFY A+
Sbjct  900   VSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDAL  959

Query  1013  ANNESARELMGKEQLRELAVVLYRKVKENASIDWTIREDVRAKLKVTVKRLLREYGYPPD  1072
              ++E+A+  M   +LR +A  L + VKEN S+DW+ R+  +AK++V+V+RLL+ YGYPPD
Sbjct  960   VSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPD  1019

Query  1073  MEALATETVLQQAEKIADE  1091
             ++ +A E V++QAE +A +
Sbjct  1020  LQKMAVEQVVEQAELMASN  1038

63) hsdR in NC_012796


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  835 bits (3162),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 502/1055 (48%), Positives = 768/1055 (73%), Gaps = 29/1055 (2%)

Query  1     MAF-ISEADVEGVLLETLGSLGYAATSDLQIGPDGHAPEREAYSDVFLQKRLEAAVEALN  59
             M F ++E D+E V+LE L SL+Y    + +I+  G APER +  DV L+ RLE A+  +N
Sbjct  1     MNFQFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKIN  60

Query  60    PHIPAEARHDAIRALIATEFPNLTEENRRLHRMMVEGVDVEFPRDDGSIAGDKVRLIDFD  119
             ++I +   + AI+ L     PNL E+N  +H  +++G+++E   D+G    + V+++DF+
Sbjct  61    SDIHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFE  120

Query  120   TPDNNDWLAVNQFTVIEGKINRRPDVVVFVNGLPLGVIELKNPGTENADLEAAFNQLQTY  179
              P+NND LAVNQFTV++G   +RPD+V+F+NGLP+ VIELKN+  E  ++E +++QL+TY
Sbjct  121   HPQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  180   KTQVTSLFRTNAVLVTSDGLQARIGSLTANQERFMPWRTTDGKEVAKKGLPELHVLIEGV  239
             K ++  LF  N VLVTSDG++++ GSLTAN +RFM WR+ DG   +  +L+ L+VLI+G+
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGM  240

Query  240   FEKRRFLDLIRDFTVFGETGSG-IAKIIAGYHQYHAVRHAVAHTVKAAAPKGDRRAGVIW  298
             ++ + +LDLIR F +F + G G I+KI+A+YHQY AV  AV +++ A++ +GD ++GVIW
Sbjct  241   LNPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIW  300

Query  299   HTQGSGKSLLMAFYAGQLVRCPELENPTIVVITDRNDLDDQLFNTFSMCRD-----LIRQ  353
             HTQGSGKSL M F++G+L++   L+NPT+V++TDRNDLD+QL++TF   ++     L+RQ
Sbjct  301   HTQGSGKSLTMVFFSGKLIQ--MLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQ  358

Query  354   TPIQATNREDLRKALNRASGGVIFTTIQKFTPEKGDSEYPLLTDRRNVVVIADEAHRSQY  413
             TP QA  R +L+  L+  SGG++FTT+QKF PE+ ++  + LT+R+NV+V+ADEAHR+QY
Sbjct  359   TPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQY  418

Query  414   GFKAKVAQKTGEIAYGFAKYLRDGLPNASFIGFTGTPIEKDDVNTPAVFGHYIDIYDISR  473
             GF+AK  +K   I YG+AKYLRD+LPNA+F+GFTGTP+   D NT  VFG+YID+YD+++
Sbjct  419   GFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQ  478

Query  474   AVEDGATVPLYYESRLARIELSAeekpkideeieelteddAVSEQEALKRKWATVEALVG  533
             AV DG+TV +YYESR+  ++L+         +     +++ V ++  LK KW+ +EAL G
Sbjct  479   AVADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQR--LKSKWSRIEALAG  536

Query  534   AEKRLKLIAQDLVRHFEDRVAAMDGKAMVVCMSRRICVALYNEIVALRPAWHSDDDNEGV  593
             A  R+  +A+D+++HFE R  AM GK+M+V MSRRI V LY+EI+ L+P WHSDDD+ GV
Sbjct  537   AKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGV  596

Query  594   VKVVMTGSASDPADWQPHVGNkarrellakrakapkDTLKLVLVRDMWLTGFDAPSMHTM  653
             +KVVMTGS+SDP+  Q H+G K RR +L KR K  +D L+LV+VRDMWLTGFD PSMHTM
Sbjct  597   IKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTM  656

Query  654   YVDKPMKGHGLMQAIARVNRVFRDKPAGLVVDYIGIGQSLKNALGQYSASDRSQAGIDEG  713
             Y+DKPMKGH LMQAIARVNRVF+DKP+GL+VDY+GI++SLK+AL +Y+ SD++Q++ID +
Sbjct  657   YIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTD  716

Query  714   KAVAVMMEKFEIVTAMFHGFDYQRAMTGTAHDRLMVMAEALDWILEQQHKAAEKETDDGK  773
             KAV +M+ K++++  M+  +DY +  +    +R   +++++D ++             G 
Sbjct  717   KAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVI-------------GL  763

Query  774   KKEAHRRFQDavlalskafalaaasdearsIRDEVAFFQTIRAALtk-----tgigggkt  828
               + ++RF  +V  L+KAFAL A+   A+ + DE+AFF++++A+L K           KT
Sbjct  764   GEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKT  823

Query  829   tAEREFAVQQLINRAVASTEIVDILAAAGLNTPDISILSDEFLVEVQQMekknlalealk  888
              AE E  ++QL++++V + +++D+  + GL+ PD+SILSD+FL +V+ + +KN+A+E L+
Sbjct  824   PAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLN  883

Query  889   kllnGEIHSRTRTNVVETKKFSERLEKAIARYHTNAVSTVEVIQELINLAKDIREARLRG  948
             +LL+G++ S  +TN   +K+FSE L ++I +Y++ ++ T  VI+ELI+LAKDI++ + RG
Sbjct  884   RLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRG  943

Query  949   EALGLSQDEIAFYDALAENQSAVDVMGDASLRVIAHELLTSLKGSITVDWAHRESARARM  1008
             + LGL+ DEIAFYDAL  +++A   M D  LR IAHEL  ++K +++VDW+ R+SA+A+M
Sbjct  944   NELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKM  1003

Query  1009  RVLVKRILKRHGYPPDLQDAAIQVVLQQAEALSAQ  1043
             RV V+R+LK+ GYPPDLQ  A++ V++QAE ++++
Sbjct  1004  RVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

64) Ppro_1854 in NC_008609


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  834 bits (3158),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 497/1041 (48%), Positives = 770/1041 (74%), Gaps = 26/1041 (2%)

Query  2     TEEHLERETLGWLADTGYSYRYGLDIAPDGPQPERGSYSQVLLVGRLREAINRLNPLVPQ  61
              E++LE+  L WL   +Y Y+ G +I+  G  PER S  +V+L  RL  A+ ++N+ +  
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62    VAREDALQQVLNLD-TPVLLAANRAFHQLLVNGVPVQ-YQQEGETRGDFVRLMDFGDAGA  119
                E A+++ L L+ +P LL  N +FH+ L+NG+ ++ Y++EG++  ++V+++DF ++  
Sbjct  66    RFIEKAIHE-LTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQN  124

Query  120   NEWLAVNQFSIKGPKFTRRPDIVLFVNGLPLVLLELKNPADEKADIWKAYDQIQTYKEQI  179
             N+ LAVNQF++    +T+RPDIVLF+NGLP+V++ELKN+++E  ++  +Y+Q++TYK +I
Sbjct  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  180   PDVFQYNEILVISDGTEARLGSLSANRERFMAWRTIDGVTLDPLGQFNELETLVRGVLAP  239
             P++F +NE+LV SDG +++ GSL+AN +RFM+WR+ DG T ++ + +  L+ L+ G+L P
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGET-ESSSSLASLDVLINGMLNP  243

Query  240   DYLLDFLRFFVLFEDDGT--LVKKIAGYHQFHAVRSAIDQVVAASRPGGSRKGGVVWHTQ  297
               LLD++R+FVLF+DDG   + K +A+YHQ+ AV  A+D+ + AS   G  KGGV+WHTQ
Sbjct  244   KTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQ  303

Query  298   GSGKSITMTCFAARVMREAAMENPTIVVITDRNDLDGQLFGVFSLSQE-----LLREQPV  352
             GSGKS+TM  F++++++   ++NPT+V++TDRNDLD QL++ F  S+      LLR+ P 
Sbjct  304   GSGKSLTMVFFSGKLIQ--MLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPK  361

Query  353   QGETRQDLRDKLANRPSGGIVFATIQKFMPGEDEDSFPILSDRHNIVVIADEAHRTQYGF  412
             Q+ETR++L+  L+   SGGIVF+T+QKF P ++E   + L++R N++V+ADEAHRTQYGF
Sbjct  362   QAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGF  420

Query  413   EAKFKGDAKGYQVGYAQHLRDALPNATFVAFTGTPVSSEDRDTRAVFGDYISIYDMQQAR  472
             +AK+ + + G + GYA+ LRDALPNATFV+FTGTPV+S D++T+ VFG+YI +YDM QA 
Sbjct  421   NAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV  480

Query  473   DDGATVAIYFESRLAKLGLKTDVLPEIdaevdelaedeeddQQARLKSRWAALEKVVGAE  532
              DG+TV IY+ESR+  L L   +  ++D   ++++ED+E+D + RLKS+W+ +E + GA 
Sbjct  481   ADGSTVKIYYESRVIPLNLPQSL--DLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAK  538

Query  533   PRIKQVAADLVAHFEERNQAQSGKAMVVAMSRDICVHLYNAIIALRPEWHDEDPEKGAIK  592
             PR+  +A D++ HFE R+QA  GK+M+V+MSR I V+LY+ II L+PEWH +D +KG IK
Sbjct  539   PRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIK  598

Query  593   IVMTGSASDKPLLRPHIYAKQTKKRLEKRFKDPDDPLKLVIVRDMWLTGFDAPCAHTMYV  652
             +VMTGS+SD   ++ HI +K+ +  LEKR KD +D L+LVIVRDMWLTGFD P  HTMY+
Sbjct  599   VVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYI  658

Query  653   DKPMKGHNLMQAIARVNRVFRDKQGGLVVDYIGIANDLKQALKEYTASKGRGRPTVDARE  712
             DKPMKGHNLMQAIARVNRVF+DK GGL+VDY+GIA+ LK+ALKEYT S ++++ ++D+  
Sbjct  659   DKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDK  717

Query  713   AYAVLEEKLDILRAMLHEFDYSGFLTGGHG----LLARTANHVLGL-QDGKKRFGDTALA  767
             A  ++  K D+++ ML ++DYS F +   +     ++ T + V+GL +D ++RF  T   
Sbjct  718   AVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTE  777

Query  768   MSKAFTLCCTLDEARAVREEVAFFQAVKV----LLTKREISTQRRTDEERELAIRQIIGS  823
             ++KAF+LC T   A+ + +E+AFF+AVK     LL     +  R+T  E E  I Q+++ 
Sbjct  778   LGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQ  837

Query  824   ALVSEDVVDIFQAVGLDKPNIGILDDEFLNDVRNLPernlavellerllegeirtrFSTN  883
             ++V+EDV+D++Q++GL++P+++IL D+FL+DV  L ++N+AVELL+RLL G++++   TN
Sbjct  838   SVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTN  897

Query  884   IVQQSRFSELLAKVIARYQNRAIETAQVMEELIAMAKKFRESINRGEELGLNADELAFYD  943
                  RFSE+L++ I +Y++R+IET++V+EELI +AK +++  +RG+ELGLN+DE+AFYD
Sbjct  898   ATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYD  957

Query  944   ALANNEEAVREMGDEILKKIAHELAENLRKNISVDWSVRESVRAKLRLMVKRILRKYKYP  1003
             AL ++E A + M D  L+ IAHEL+  ++ N+SVDWS R+S +AK+R+ V+R+L+KY YP
Sbjct  958   ALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYP  1017

Query  1004  PDRQEEAVQLVLDQAETLSAE  1024
             PD Q  AV+ V++QAE ++++
Sbjct  1018  PDLQKMAVEQVVEQAELMASN  1038

65) Pnap_4782 in NC_008761


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  834 bits (3157),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 484/1025 (48%), Positives = 750/1025 (74%), Gaps = 30/1025 (2%)

Query  2     TEDQLEQETLAWLQDVGYTCHCGYDIAPDGPAPERSSFSQALLPFRLREAIHKLNPGIPT  61
              ED+LEQ  L WL+ ++Y    G +I+  G APER S  + +L  RL  A++K+N++I  
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62    PAREDAFKQVLDLG-IPALLSANRHFHKLLVGGVPVE-YQKDGQTRGDFVRLIDWAQPAR  119
                E A+ + L L   P LL  N  FH  L+ G+ +E Y+ +GQ+  ++V+++D  +P  
Sbjct  66    RFIEKAIHE-LTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQN  124

Query  120   NEFLAVNQFSLKGAHHTRRPDIILFVNGLPLVLLELKNPADLNANVWKAYDQIQTYKAQI  179
             N+FLAVNQF++  ++ T+RPDI+LF+NGLP+V++ELKN+++    V  +Y+Q++TYK +I
Sbjct  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  180   PGVFEYNEVLVISDGTEAllgslssssERFMAWRTIDGQALDPLGQFNELQTLVRGVLAP  239
             P +F +NEVLV SDG ++  GSL+++ +RFM+WR+ DG++ ++ + +  L+ L+ G+L P
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGET-ESSSSLASLDVLINGMLNP  243

Query  240   AYLLDYLRYFVLFEDDG--QLAKKIAGYHQFHAVRSAITQVVTASRPGGTHKGGVVWHTQ  297
               LLD +RYFVLF+DDG  +++K +A+YHQ+ AV  A+ + + AS   G  KGGV+WHTQ
Sbjct  244   KTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQ  303

Query  298   GSGKSITMTCFAARVMQEPAMENPTIVVITDRNDLDGQLFGVF-----SLAQDLLREQPV  352
             GSGKS+TM  F+++++Q   ++NPT+V++TDRNDLD QL++ F       +++LLR+ P 
Sbjct  304   GSGKSLTMVFFSGKLIQ--MLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPK  361

Query  353   QVSTRQDLRTRLANRPSGGIVFATIQKFMPGEDEDTFPTLSERHNIVVIADEAHRTQYGF  412
             Q  TR++L++ L+   SGGIVF+T+QKF P ++E   ++L+ER N++V+ADEAHRTQYGF
Sbjct  362   QAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGF  420

Query  413   EAKLKGKPGHETYQVGYAQHLRDALPNATFVAFTGTPVSSEDRDTRAVFGDYISVYDMQQ  472
             +AK  +K     Y  GYA+ LRDALPNATFV+FTGTPV+S D++T+ VFG+YI VYDM Q
Sbjct  421   NAKYDDKGEGIKY--GYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQ  478

Query  473   AKEDGATVAIYYESRLAKLKLKEEDFSLIdeevdelaedeeeSTQAKLKSRWAALEKVVG  532
             A  DG+TV IYYESR+  L+L  + + L DE  ++++ED+EE  + +LKS+W+ +E + G
Sbjct  479   AVADGSTVKIYYESRVIPLNL-PQSLDL-DEAYNDITEDQEEDVKQRLKSKWSRIEALAG  536

Query  533   AEPRVASVAADLVAHFEERNKAQSGKAMTVAMSRDICVHLYNEIVKLRPDWHDPDPEKGA  592
             A PRV ++A D++ HFE R++A  GK+M V+MSR I V+LY+EI++L+P+WH  D +KG 
Sbjct  537   AKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGV  596

Query  593   IKIVMTGSSSDKALLRPHIYSAQVKKRLEKRFKDPADPLRLVIVRDMWLTGFDAPCVHTL  652
             IK+VMTGSSSD + ++ HI + + +  LEKR KD  D L+LVIVRDMWLTGFD P +HT+
Sbjct  597   IKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTM  656

Query  653   YVDKPMKGHNLMQAIARVNRVFKDKQGGLVVDYIGIGNELKAAMKEYTQSKGRGRPTVDA  712
             Y+DKPMKGHNLMQAIARVNRVFKDK GGL+VDY+GI++ LK A+KEYT+S ++++ ++D+
Sbjct  657   YIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDT  715

Query  713   HEAYSVLAEKLDILQTMLHGYDYSGFLTGGHK----ALAGAANHVLG-AQDGKKRFADTA  767
             + A  ++  K D++Q ML   DYS F +        +++ + + V+G ++D ++RF  T 
Sbjct  716   DKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTV  775

Query  768   LQMSKAFSLCCTLDEAKAVREEVAFLQGVKVILTK-----KDLSAQKKTDEQRDLAIRQI  822
              +++KAF+LC T   A+ + +E+AF+++VK  L K     K+ +  +KT  + +  I Q+
Sbjct  776   TELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKE-GKTRKTPAEVEAEINQL  834

Query  823   INSAVVSDSVVDIFDAVGLDKPNIGLLSDEFLAQVKNLPEKNLAVELLERLLEGEIKSRF  882
             ++ +VV++ V+D+++++GL++P++++LSD+FL +V  L +KN+AVELL+RLL G++KS  
Sbjct  835   VSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLM  894

Query  883   ASNVVQEKKFSELLAGVIKRYQNRSIETAQVMEELVAMARKFQEAANRGEALGLTEDEIK  942
              +N    K+FSE+L+  I++Y++RSIET++V+EEL+ +A+ +++  +RG+ LGL  DEI 
Sbjct  895   KTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIA  954

Query  943   FYDALATNESAVRELTDETLKKIAHELTENLRQNLSVDWSERESVRARLRLMVRRILRKY  1002
             FYDAL ++E+A + + D  L+ IAHELT  +++N+SVDWS R+S +A++R+ VRR+L+KY
Sbjct  955   FYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKY  1014

Query  1003  KYPPD  1007
              YPPD
Sbjct  1015  GYPPD  1019

66) A458_03965 in NC_018028


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  834 bits (3158),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 492/1047 (47%), Positives = 759/1047 (73%), Gaps = 31/1047 (2%)

Query  2     TEDQLEQECLGWLGELGYTHLYGPDIAHDGGDPQRDSYRQVVLTERLRAAIAKLNPQVPL  61
              ED+LEQ  L WL  L+Y    G +I+  G  P+R S ++VVL ERL  A+ K+N+++  
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62    AAREDALKQVVDLGVPAQLSANRLFHRLLVGGVPVQ-YQLDGETRGDFVRLIDWVNVRGN  120
                E A+ ++     P  L  N  FH  L+ G+ ++ Y+ +G++  ++V+++D  + + N
Sbjct  66    RFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNN  125

Query  121   EWLAINQFSIQGPKHTRRPDIILFVNGLPLVLLELKNPADVNADLWKAFDQLQTYKEQIP  180
             + LA+NQF++     T+RPDI+LF+NGLP+V++ELKN+++   ++  +++QL+TYK +IP
Sbjct  126   DFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  181   DLFHYNEILVISDGSEARMGSLSADAERFMNWRTIDGEQLDPLGQFNELETLLRGVMAPE  240
             +LF +NE+LV SDG +++ GSL+A+ +RFM WR+ DGE  ++ + +  L+ L+ G++ P 
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGET-ESSSSLASLDVLINGMLNPK  244

Query  241   MLLDYLRYFVLFEDDGR--LVKKIAGYHQFHAVRAAIRQVVTASRPGGTHKGGVVWHTQG  298
              LLD +RYFVLF+DDG+  + K +A+YHQ+ AV  A+ + + AS   G  KGGV+WHTQG
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQG  304

Query  299   SGKSITMTCFAARVMQAAAMENPTIVVITDRNDLDGQLFGVFSLSHD-----LLREQPVQ  353
             SGKS+TM  F+++++Q   ++NPT+V++TDRNDLD QL++ F  S +     LLR+ P Q
Sbjct  305   SGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQ  362

Query  354   AETRGDLREKLGNRPSGGIVFATIQKFMPGEDEDSFPVLSTRSNIVVIADEAHRTQYGFH  413
             AETR +L+  L+   SGGIVF+T+QKF P ++E   + L+ R N++V+ADEAHRTQYGF+
Sbjct  363   AETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFN  421

Query  414   ASLKAPDLKVAEASARYQVGYAQHLRDALPNATFVAFTGTPVSSEDRDTRAVFGDYIHVY  473
             A     +      + +Y  GYA+ LRDALPNATFV+FTGTPV+S D++T+ VFG+YI+VY
Sbjct  422   AKYDDKG-----EGIKY--GYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVY  474

Query  474   DMQQAKDDGATVAIYYESRLAKLSLKDSELAHIddevdelaedeeedQQSRLKSRWAALE  533
             DM QA  DG+TV IYYESR+  L+L +S   ++D+  ++++ED+EED + RLKS+W+ +E
Sbjct  475   DMTQAVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITEDQEEDVKQRLKSKWSRIE  532

Query  534   KVVGAEPRIKSVAADLVAHFEERNQAQSGKAMIVAMSREICVHLYNEIVALRPEWHDEDP  593
              + GA PR+ ++A D++ HFE R+QA  GK+MIV+MSR I V+LY+EI+ L+PEWH +D 
Sbjct  533   ALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDD  592

Query  594   EQGAIKVVMTGSASDKALLRPHIYPSQVKKRLEKRFKDPKDPLQLVIVRDMWLTGFDAPC  653
             ++G IKVVMTGS+SD + ++ HI P + +  LEKR KD +D LQLVIVRDMWLTGFD P 
Sbjct  593   DKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPS  652

Query  654   VHTLYVDKPMKGHNLMQAIARVNRVFKDKQGGLVVDYIGIANELKAALKEYTASKGRGRP  713
             +HT+Y+DKPMKGHNLMQAIARVNRVFKDK GGL+VDY+GIA+ LK ALKEYT S ++++ 
Sbjct  653   MHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQT  711

Query  714   TVDAHEAYSVLEEKLDVLRSLLHGFDYSDYLTGGHK----LLAGAANHVLGL-EDGKKRF  768
             ++D++ A  ++  K DV++ +L  +DYS + +         ++ + + V+GL ED ++RF
Sbjct  712   AIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRF  771

Query  769   ADNALAMSKAFTLCCTLDEAKAVREEVAFLQAIKV----LLTKREISAKKKSDEERELAI  824
                   ++KAF+LC T   A+ + +E+AF++A+K     LL     +  +K+  E E  I
Sbjct  772   IKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEI  831

Query  825   RQIIGNAVVSGEVVDVFEAVGLDKPNIGLLDDEFLAEVRNLPERNLAVELLERLLEGEIK  884
              Q+++++VV+ +V+DV++++GL++P++++L D+FL +V  L ++N+AVELL+RLL G++K
Sbjct  832   NQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVK  891

Query  885   SKFASNLAQEKKFSELLDNVIKRYQNRSIETAQVIEELIEMAKKFAAASKRGDELGLNDD  944
             S   +N +  K+FSE+L+N I++Y++RSIET++VIEELI++AK +    +RG+ELGLN D
Sbjct  892   SLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSD  951

Query  945   ELAFYDALANNEASVRELGDEILAKIAHELTASLRQNVTVDWSNRDSVRAKLRLMVKRIL  1004
             E+AFYDAL ++E++ + + D  L  IAHELT ++++N++VDWS+RDS +AK+R+ V+R+L
Sbjct  952   EIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLL  1011

Query  1005  RKYKYPPDQQEGAAQLILEQAEMLCAG  1031
             +KY YPPD Q  A + ++EQAE++ + 
Sbjct  1012  KKYGYPPDLQKMAVEQVVEQAELMASN  1038

67) MmTuc01_2253 in NC_020389


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  833 bits (3154),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 501/1070 (47%), Positives = 755/1070 (71%), Gaps = 80/1070 (7%)

Query  19    LERQGYQYIYAPDIAPDSDTPERDRFEDVLLLERLRKAIGRINPDIPADAREDAIRQVRR  78
             LE  +Y+Y  + +I+  + +PER    DV+L ERL KA+ +IN+DI +   E AI+++  
Sbjct  18    LESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHPRFIEKAIHELTL  77

Query  79    LNSPELISNNEAFHKMLTEGINV-SYRKDGADRGDLVWLVDFKDPENNDFLVANQFTVVE  137
              +SP+L+ NN +FH  L +GI++  Y  +G    ++V +VDF +P+NNDFL  NQFTVV+
Sbjct  78    EKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNNDFLAVNQFTVVN  137

Query  138   NDKNKRPDIILFVNGLPLVVIELKNPADENATVRSAFRQFQTYKQTIPSLFAYNGFMVIS  197
              D  KRPDI+LF+NGLP+VVIELKN+++E   V  +++Q++TYK  IP LF++N  +V S
Sbjct  138   GDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTS  197

Query  198   DGLEARSGSLSAGFTRFMAWKSSDGRGEASPLIGQLETLIKGMLEKTTLLDILRHFIVFE  257
             DG+++++GSL+A + RFM+W+S DG  E+S+ ++ L+ LI+GML+  TLLD++R F++F+
Sbjct  198   DGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPKTLLDLIRYFVLFQ  257

Query  258   KSKKEDSATGIITIQTVKKLASYHQYYAVNRAVESTLRASGYAAKENWDWDTLGIHYESP  317
                K          +  K LA+YHQYYAVN+AV+ +L AS+                   
Sbjct  258   DDGKG---------HISKILAAYHQYYAVNKAVDRALLASS-------------------  289

Query  318   ENYGLPGVKKQPVGDRKGGVIWHTQGSGKSLTMVFYTGKIVLAMDNPTLVVITDRNDLDD  377
                          GD KGGVIWHTQGSGKSLTMVF++GK++  ++NPTLV++TDRNDLD+
Sbjct  290   -----------GQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVIVTDRNDLDN  338

Query  378   QLFDTFA-----ASKQLLRQEPVQAENRDHLKQLLNVASGGIVFTTIQKFQPEEGN-VYP  431
             QL+ TF      ++K LLRQ P QAE R +LK LL+V SGGIVFTT+QKF+PE+ + + +
Sbjct  339   QLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMA  398

Query  432   KLSDRKNIIVIADEAHRTQYGFKAKNVDVKDEQGNVIGKKIVYGFAKYTRDV--------  483
              L++RKN+IV+ADEAHRTQYGF+AK     D++G+ I     YG+AKY RD         
Sbjct  399   ALTERKNVIVMADEAHRTQYGFNAKY----DDKGEGIK----YGYAKYLRDALPNATFVG  450

Query  484   -----------NTPVVFGNYVDIYDISQSVEDGATVKIYYESRLAKVTLSNEGkklvael  532
                        NT +VFGNY+D+YD++Q+V DG+TVKIYYESR+  + L+ ++  L    
Sbjct  451   FTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLP-QSLDLDEAY  509

Query  533   deeldkedlaeTQKIKAKWTQLEALIGSEARIKQIAKDIVTHFEQRQEVFEGKGMIVAMS  592
             ++  + ++    Q++K+KW+++EAL G+ +R+  +AKDI+ HFE RQ+   GKGMIV+MS
Sbjct  510   NDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMS  569

Query  593   RRIAADLYDEVIKIKPEWHSDDLRKGAIKVVMTSASSEGPKISKHHTTKDQRRILAERMK  652
             RRIA DLYDE+I++KPEWHSDD  KG IKVVMT++SS+   + +H   K +R +L  RMK
Sbjct  570   RRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMK  629

Query  653   NPEDELKLVIVRDMWLTGFDVPCLHTMYIDKPMKGHTLMQAIARVNRVYKDKPGSLIVDY  712
             + +DEL+LVIVRDMWLTGFDVP +HTMYIDKPMKGH LMQAIARVNRV+KDKPG+LIVDY
Sbjct  630   DVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDY  689

Query  713   LGIASDLKEALSFYSDSGGKGDPAVLQEKAVQLMLEKLEIVSQMFHGFTFDDYFEADTSR  772
             +GIA  LKEAL  Y++S ++++ A+  +KAV+LML K +++ +M+  + +  +     S 
Sbjct  690   VGIAESLKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSE  748

Query  773   KLSIILEAEEHILGL-ENGKKRYIDEVTALSKAFSLAIPHEQAMDVKDEISFYQAVKARL  831
             +   I ++ + ++GL E+ ++R+I  VT L+KAF+L   +  A +++DEI+F++AVKA L
Sbjct  749   RYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGL  808

Query  832   VKF----DGTGTGKTDEDIETAIRQVIDKALVTEQVIDVFDAAGIKKPDISILSEDFLLE  887
             VK+        T KT  ++E+ I Q++ +++VTE+VIDV+++ G+ +PD+SILS+DFL +
Sbjct  809   VKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKD  868

Query  888   VRNMEHKNLALEVLKKLLNDEIRARIKKNLIQSRSLMEMLENSITRYHNKVLTAAEVIEE  947
             V  + +KN+A+E+L++LL++++++ +K N   S+ + EML NSI +Y+++ + ++ VIEE
Sbjct  869   VEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEE  928

Query  948   LIKLSKEIKRMDKEPQEMGLSEFEYAFYTAIADNESAREVMQKEKLRELAVVLFEKVKQN  1007
             LI+L+K+IK+ ++  +E+GL+  E AFY A+  +E+A+  M+  KLR +A  L   VK+N
Sbjct  929   LIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKEN  988

Query  1008  ASIDWTIKESVRAKLKVIVKRTLRQYGYPPDMQALATETVLKQAELIADE  1057
              S+DW+ ++S +AK++V V+R L++YGYPPD+Q +A E V+ QAEL+A +
Sbjct  989   MSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

68) Ngar_c29150 in NC_018719


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  832 bits (3150),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 498/1041 (48%), Positives = 786/1041 (76%), Gaps = 24/1041 (2%)

Query  6     SEADVEENVLAILESMGYKIIRGDNEDCLPGGSSALRADYKDVVLVDRLTDSLRKINPSA  65
             +E D+E+ VL  LES++Y   +G NE  + G ++  ++D KDVVL +RL  +LRKIN+  
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKG-NEISMTGLAPERKSD-KDVVLHERLEKALRKINSDI  63

Query  66    PIDALDQAIKQVLRSESQKLIANNESFHKMLVDGIDIPVQTLEGETYKKI-WLFDFEDPE  124
                 +++AI ++    S +L+ NN +FH  L++GI+I     EG++   I  + DFE+P+
Sbjct  64    HPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQ  123

Query  125   NNEFLAVNQFTVVENNIERRPDVILFVNGIPLLVIELKNLADENATIWTAYDQLQTYKEQ  184
             NN+FLAVNQFTVV+ +  +RPD++LF+NG+P++VIELKN ++E   +  +Y+QL+TYK +
Sbjct  124   NNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  185   LPSLFKYNEILVISDGIEARAGTLTSERERFAQWKTIDGGA-PRKGLTEIEVLIRGMCNK  243
             +P LF +NE+LV SDGI+++AG+LT++ +RF  W++ DG + +  +L+ ++VLI GM N 
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNP  243

Query  244   QRFLDIVRNFIVFEKDK--SVSKKLAAYHQYWAVNKALESTI--KARKGNKKAGIVWHTQ  299
             + +LD++R F++F+ D    +SK LAAYHQY AVNKA++ ++   + +G+ K+G++WHTQ
Sbjct  244   KTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQ  303

Query  300   GSGKSLTMVFYTGKLVRELDNPTVVVLTDRNDLDDQLFGTFSRCQD-----IIRQEPQQA  354
             GSGKSLTMVF++GKL++ L+NPT+V++TDRNDLD+QL++TF + ++     ++RQ P+QA
Sbjct  304   GSGKSLTMVFFSGKLIQMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQA  363

Query  355   NSRKELQDLLKVSSGGIVFTTIQKFLPEEDNREKYPVLSERDNIVVIADEAHRSQYGFAA  414
             ++RKEL+ LL V SGGIVFTT+QKF PE+++    + L+ER N++V+ADEAHR+QYGF A
Sbjct  364   ETRKELKSLLSVESGGIVFTTMQKFEPEQNETIM-AALTERKNVIVMADEAHRTQYGFNA  422

Query  415   KILNKDDKTLITYGYAKYLRDALPNASFIGFTGTPIEKADRSTPAVFGKYVDTYDIEQAV  474
             K  +K++   I YGYAKYLRDALPNA+F+GFTGTP+  +D++T  VFG+Y+D YD+ QAV
Sbjct  423   KYDDKGEG--IKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV  480

Query  475   NDGATVRIYYESRLAKLELKPEERPKIDSefeevtegeevegkekLKSKWARVEKVAGAP  534
              DG+TV+IYYESR+  L+L   +   +D  ++++TE++E + K++LKSKW+R+E +AGA 
Sbjct  481   ADGSTVKIYYESRVIPLNL--PQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAK  538

Query  535   MRIKRIAKDIVDHFEKRTSVLEGKGMIVCMSRRICVELYNEIVELRPEWKNSDDEKGAIK  594
              R+  +AKDI++HFE R   + GKGMIV MSRRI V+LY+EI+ L+PEW + DD+KG IK
Sbjct  539   PRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIK  598

Query  595   VVMTGSASDPKEWQEHIRNKIRRKRIGDNFKDPKHELRLIIVRDMFLTGYDAPSLHTMYL  654
             VVMTGS+SDP   Q HI  K RR  +    KD ++EL+L+IVRDM LTG+D PS+HTMY+
Sbjct  599   VVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYI  658

Query  655   DKPMKGHTLMQAIARVNRVYPGKEGGLIVDYMGVGAELKKALMDYTASGGKGKPAFDQek  714
             DKPMKGH LMQAIARVNRV+ +K GGLIVDY+G++  LK AL +YT S ++++ A+D +K
Sbjct  659   DKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDK  717

Query  715   avmmmvekyevvkDMFHGFNYRKFFELKPSERISFIPQAMEHILK-EPGKKERYAREVTA  773
             AV +M+ KY+V++DM+  ++Y KF   K SER   I+++M+ ++    + ++R+ + VT 
Sbjct  718   AVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTE  777

Query  774   LLKAFSLAVPHDRAMKIKEEVGLFQAIKSAIAKTTETGKESQEEK----FDSAIKQILSK  829
             L KAF+L   +  A  +++E+++F+A+K+++ K  +  KE++  K     ++ I+Q++S+
Sbjct  778   LGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQ  837

Query  830   AVISDRIIDIFEAAGIQKPELSILSDGFLAEVKDMPQKNLAFEALKKLLNDEIRFMSKRN  889
             +V+++ +ID++++ G+++P+LSILSD+FL +V ++ QKN+A E L++LL+++++ + K N
Sbjct  838   SVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTN  897

Query  890   LVQAKSFMEMLDKTIKKYTNRNVEAAQVIEELIELAKKVRAEKNRAKEQNMSEDELAFYD  949
                +K F EML+++I+KY +R++E+++VIEELI+LAK ++ E++R++E  ++ DE+AFYD
Sbjct  898   ATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYD  957

Query  950   ALEVNDSAVKILGDETLRKIAVELTQMIRNSVTIDWTQRESVQAAIRLNVKKILRKYGYP  1009
             AL  +++A K + D  LR IA ELT+ +++++++DW++R+S +A +R+ V+++L+KYGYP
Sbjct  958   ALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYP  1017

Query  1010  PDKEKKATETVLRQAELVAKN  1030
             PD +K A E V+ QAEL+A N
Sbjct  1018  PDLQKMAVEQVVEQAELMASN  1038

69) hsdR in NC_012489


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  831 bits (3148),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 480/1064 (46%), Positives = 766/1064 (72%), Gaps = 51/1064 (4%)

Query  3     RFSESIVEDAALEWLAGLGYEVRHGPDMAAGEPGAERSDPGYRDVVlehrlraallrlnp  62
             +F+E  +E+  LEWL +L+Y+ + G +++    ++ER     +DVVL++RL  AL ++N+
Sbjct  4     QFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSD--KDVVLHERLEKALRKINS  61

Query  63    llqaEAIDEAYRKLTRLDAPSAMDRNRAMHRMLLNGVEVEFRRPDGSIGGGQVQIFDFDT  122
              +++  I+ A + LT   +P+ ++ N + H  L+NG+E+E    +G      V+I DF+ 
Sbjct  62    DIHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEH  121

Query  123   PTNNNWLAVNQFSVAEGQHHRRPDVVVFVNGLPLAVLELKNAADENATIWSAWQQLQTYQ  182
             P NN+ LAVNQF+V +G+  +RPD+V+F+NGLP+ V+ELKN+++E   +  + +QL+TY+
Sbjct  122   PQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYK  181

Query  183   AQIPTLFTSNLALVISDGVQARIGALGAGKEWFKPWRTVSGTTSAPSSLSELEVLLHGVF  242
              +IP LFT N  LV SDG++++ G+L A  ++F  WR+  G T ++SSL+ L+VL++G++
Sbjct  182   MRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGML  241

Query  243   EHRRFLDLLHYFVAFEQEDDGPLVKKLAGYHQYHAVNVAVEETLRAARSVNPDRIAENIG  302
             + + +LDL++YFV F++++ G + K LA+YHQY AVN AV+ +L                
Sbjct  242   NPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRAL----------------  285

Query  303   RYSSGEQPGGEPGDRRVGVVWHTQGSGKSLTMAFYAGRVILHPGMANPTVVVITDRNDLD  362
                    +++  GD + GV+WHTQGSGKSLTM F++G++I    + NPT+V++TDRNDLD
Sbjct  286   ------LASSGQGDGKGGVIWHTQGSGKSLTMVFFSGKLI--QMLNNPTLVIVTDRNDLD  337

Query  363   EQLFGTFARC-----RNLLRQEPVQAKDRADLRKQLAVSAGGVIFTTIQKFMPDERGDKH  417
             +QL++TF +      + LLRQ P QA  R +L+  L+V +GG++FTT+QKF P++     
Sbjct  338   NQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIM  397

Query  418   PPLSDRRNVIVIADEAHRSQYEFHD-----------GFAGHMRDALPNASFVGFTGTPIE  466
             ++L++R+NVIV+ADEAHR+QY F+            G+A  +RDALPNA+FVGFTGTP+ 
Sbjct  398   AALTERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVA  457

Query  467   KADANTRQVFGEYISVYDIQRAVVDGATVPIYYESRLAKLEFAESEKLGIDSAFeevteg  526
              +D NT+ VFG+YI VYD+ +AV DG+TV IYYESR+  L++++S  L++D A++++TE+
Sbjct  458   STDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITED  515

Query  527   eeverkeQLKSKWAQLEVIAGADTRLDLIARDIVDHFERRNEVLDGKAMIVVMSRRIAVA  586
             +E + K++LKSKW+++E +AGA  R++ +A+DI++HFE R++ + GK+MIV MSRRIAV 
Sbjct  516   QEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVD  575

Query  587   LYNRIVALRPEWHSDRNDEGLLKIVMTGSASDPVDWQPHIRNKTDREALATRFRDGSSGF  646
             LY+ I+ L+PEWHSD +D G++K+VMTGS+SDP   Q HI  K  R  L  R +D +  +
Sbjct  576   LYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDEL  635

Query  647   RLVIVRDMWLTGFDCPSLATMYVDKPMRGHGLMQAIARVNRVFKDKPGGLVVDYLGLADA  706
             +LVIVRDMWLTGFD PS+ TMY+DKPM+GH LMQAIARVNRVFKDKPGGL+VDY+G+A++
Sbjct  636   QLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAES  695

Query  707   LKSALATYTEAGGTGKTALDQEEAVAVMLEKHEICVGLFHGFDRSAWYVGTAQQRLSLLP  766
             LK AL  YTE+ + ++TA+D + AV +ML K ++  +++  +D S        +R   ++
Sbjct  696   LKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTIS  754

Query  767   AAQEHVLALP-DGKERLMRHVSELTRAFALAVPHDTAMHIRDDVGFFQAVRAVLAK----  821
              + + V++L  D ++R+++ V+EL +AFAL   + TA ++ D+++FF+AV+A L K    
Sbjct  755   NTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQP  814

Query  822   NEVGRAR-PRSDVEHAIRQIVSKALVSDEVIDVFTAAGLKKPDISILSDEFLAEVRGMPH  880
                G++R   ++VE  I Q+VS+++V+++VIDV+ + GL +PD+SILSD+FL +V G+ +
Sbjct  815   PKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQ  874

Query  881   RNLAVELLQKLLKGEIRTRSRRNVVQARSFAGLLEQALRRYQNRAVETAQIIEELIKLAK  940
             +N+AVELL++LLKG++++  + N   ++ F+ +L +++ +Y++R++ET+++IEELI+LAK
Sbjct  875   KNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAK  934

Query  941   DMRAANARGEALGLTDDELAFYDALEVNDSAVQVLGDEQLRVIARELVATIRKNVSIDWA  1000
             D++  + RG+ LGL  DE+AFYDAL  +++A + + D +LR IA+EL  T++ N+S+DW+
Sbjct  935   DIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWS  994

Query  1001  IRDNMRAQLRVYVKRILRKYGYPPDKQERATQTVLEQAELLSSE  1044
              RD+ +A++RV V+R+L+KYGYPPD Q  A + V+EQAEL++S+
Sbjct  995   KRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

70) CAP2UW1_1871 in NC_013194


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  830 bits (3142),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 493/1067 (47%), Positives = 765/1067 (72%), Gaps = 52/1067 (4%)

Query  2     TEDHLEQEALGWLTEVGYDTLYGPDIAPDGANPERAGYQQVLLPFRLREAIHRLNPSIPL  61
              ED+LEQ  L WL  ++YD   G +I+  G  PER + ++V+L  RL  A++++N+ I  
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62    AAREDALKQVLDLG-IPALLSANRHFHKLLVGGVPVQ-YQKDGETRGDLVRLIDWTNPAK  119
                E A+ + L L   P LL  N  FH  L+ G+ ++ Y+ +G++  ++V+++D  +P +
Sbjct  66    RFIEKAIHE-LTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQN  124

Query  120   NKWLAINQHSIKGPHHTRRPDIILFINGLPLVLIELKNPADGNADIWRAYDQLQTYKEQI  179
             N  LA+NQ ++   + T+RPDI+LFINGLP+V+IELKN+++   ++  +Y+QL+TYK +I
Sbjct  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  180   PDAFQYNEVLIISDGSEARFGSLSANAERFMQWRTIDGVALDPLGEFNELETLVRGLLAP  239
             P+ F +NEVL+ SDG +++ GSL+AN +RFM WR+ DG + ++ + +  L+ L+ G+L P
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGET-ESSSSLASLDVLINGMLNP  243

Query  240   AILLDYLRFFVLFEDDGA--LVKKIAGYHQFHAVRAAIDQVVTASRPGGTHKGGVVWHTQ  297
               LLD +R+FVLF+DDG   + K +A+YHQ+ AV  A+D+ + AS   G  KGGV+WHTQ
Sbjct  244   KTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQ  303

Query  298   GSGKSITMTCFAARVMQEAVMENPTIVVITDRNDLDGQLFGVF-----SLAQDLLREEPV  352
             GSGKS+TM  F+++++Q  +++NPT+V++TDRNDLD QL++ F       +++LLR+ P 
Sbjct  304   GSGKSLTMVFFSGKLIQ--MLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPK  361

Query  353   QANTRQDLRAKLGNRPSGGIVFATIQKFMPGEDEDAYPTLSDRHNIVVIADEAHRTQYGF  412
             QA+TR++L++ L+   SGGIVF+T+QKF P ++E   ++L++R N++V+ADEAHRTQYGF
Sbjct  362   QAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGF  420

Query  413   EARLKTVRAPRNTAGDGVNDANARLAAEPAASYLSRYQVGYAQHLRDALPNATFVAFTGT  472
             +A+        +  G+G+                 +Y  GYA+ LRDALPNATFV+FTGT
Sbjct  421   NAKY-------DDKGEGI-----------------KY--GYAKYLRDALPNATFVGFTGT  454

Query  473   PVSSEDRDTRAVFGDYIHVYDMQQAKEDGATVAIYFESRLAKLSLNEAELPHIddevdel  532
             PV+S D++T+ VFG+YI+VYDM QA  DG+TV IY+ESR+  L+L ++   ++D+  +++
Sbjct  455   PVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDI  512

Query  533   aedeeeGQQARLKSKWAALEKVVGAEPRIASVAADLVAHFEERSQAQTGKAMVVAMSREI  592
             +ED+EE+ + RLKSKW+ +E + GA PR+ ++A D++ HFE R QA  GK+M+V+MSR I
Sbjct  513   TEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRI  572

Query  593   CVHLYNEITRLRPEWHDADPEKGAIKIVMTGSASDKALLRPHIYSAQVKKRLEKRFKDPA  652
              V+LY+EI RL+PEWH  D +KG IK+VMTGS+SD + ++ HI + + +  LEKR KD  
Sbjct  573   AVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVN  632

Query  653   DPLRIVIVRDMWLTGFDAPCVHTMYIDKPMKGHNLMQAIARVNRVFKDKQGGLVVDYIGI  712
             D L++VIVRDMWLTGFD P +HTMYIDKPMKGHNLMQAIARVNRVFKDK GGL+VDY+GI
Sbjct  633   DELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGI  692

Query  713   ANELKSALKEYTASQGRGRPTVDVAEAYAVLEEKLDILRGMLHGFDYSDFLT--TGHR--  768
             A+ LK ALKEYT S+ +++ ++D   A  ++  K D++++ML  +DYS F +   ++R  
Sbjct  693   AESLKEALKEYTESD-QAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYY  751

Query  769   RLAGAANHVLG-QKDGKKRFADTALAMSRAFTLCCTLDAAKEVREEVAFMQAVKVILTK-  826
              ++ + + V+G   D ++RF  T   +++AF+LC T  +A+E+ +E+AF +AVK  L K 
Sbjct  752   TISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKL  811

Query  827   ---RDLSQQRRTDEQRELAIRQIINSAIVSEEVVDVFDAVGLDKPNIGILDDAFLAEVRN  883
                   ++ R+T  + E  I Q+++ ++V+E+V+DV++++GL++P+++IL D FL +V  
Sbjct  812   LQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEG  871

Query  884   LPERNLAVELLERLLEGEIKSRFAGNVVQAKKFSELLTNVIKRYQNRAIETAQVIEELIE  943
             L ++N+AVELL+RLL G++KS    N   +K+FSE+L N I++Y++R+IET++VIEELI+
Sbjct  872   LKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQ  931

Query  944   MAKKFRAAANRGEALGLTEDEVRFYDALADNESAVRELSDETLKKIAHELTESLRQNITV  1003
             +AK ++   +RG+ LGL  DE+ FYDAL  +E+A + + D  L+ IAHELT ++++N++V
Sbjct  932   LAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSV  991

Query  1004  DWSARDSIRARLRLMVKRILRKYKYPPDQQEAAIELVLKQAEVLGEE  1050
             DWS RDS +A++R+ V+R+L+KY YPPD Q  A+E V+ QAE+++ +
Sbjct  992   DWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

71) PP1Y_AT2851 in NC_015580


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  828 bits (3135),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 490/1049 (47%), Positives = 748/1049 (72%), Gaps = 28/1049 (2%)

Query  3     KFSEDIVELASIEILQDLGWNYLHGSVIAPDGVAAERQAFSDVILLPRLEKAVADLNPTL  62
             +F+ED +E   +E L+ L+ +Y  G+ I+  G+A+ER++  DV+L  RLEKA+  +N+ +
Sbjct  4     QFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDI  63

Query  63    PeaaraeairrLLTSETGSLVEENRRIHRLLTDGVPVEYRNTDGRIVGDKVWLLDLDKVE  122
                    AI+ L    + +L+E+N  +H  L +G+ +E  + +G+ + + V ++D++  +
Sbjct  64    HPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQ  123

Query  123   SNDWLVVNQFTVVEGSQNRRPDVILFVNGLPLAVLELKNAAAENATISDAFHQLQTYLAQ  182
             +ND L VNQFTVV+G   +RPD++LF+NGLP+ V+ELKN++ E   + D++HQL+TY  +
Sbjct  124   NNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  183   IPSLFRTNAVLITSDGIEARIGSLAADQERFMPWRTVTGEDFAHRGQPELETLLRGVFTR  242
             IP LF  N VL+TSDGI+++ GSL+A+ +RFM WR+  GE  +  + + L+ L+ G++  
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNP  243

Query  243   ANILALIRDFIVFGDAGAGPF-KIIAGYHQFHGARKAIREAVDASSPLGDRKIGVIWHTQ  301
               +L LIR F++F D G G + KI+A+YHQ+ +  KA+  A+ ASS  GD K GVIWHTQ
Sbjct  244   KTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQ  303

Query  302   GSGKSFLMAFFAGLAVKSPELSNPTIVVLTDRNDLDDQLASTFSLCKD-----LLRQNPE  356
             GSGKS+ M FF+G  ++   L+NPT+V++TDRNDLD+QL STF   K+     LLRQ P 
Sbjct  304   GSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPK  361

Query  357   QAESREDLQRLLARASGGVIFTTIQKFSPERGEESFPMLTDRRNVIVMADEAHRSQYGFD  416
             QAE+R +L+ LL+  SGG++FTT+QKF PE+ E   + LT+R+NVIVMADEAHR+QYGF+
Sbjct  362   QAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFN  421

Query  417   AKLDVKTGARRYGYAHYIRQAMPNASFIGFTGTPIEAADVNTPAIFGRYIDIYDISRAVE  476
             AK D K  + +YGYA Y+R+A+PNA+F+GFTGTP+ ++D NT  +FG YID+YD+++AV 
Sbjct  422   AKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVA  481

Query  477   DGATVPIYYESRLARIELDEDEKPLIDAEIEALVEDDTLTEAEKAKAKWSTVEALVGSDK  536
             DG+TV IYYESR+  ++L +     +D   + + ED+     ++ K+KWS +EAL G+  
Sbjct  482   DGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKP  539

Query  537   RLKQIAADMVTHLEARTDGTEYKGMAVCMSRRICVALYNEIIALRPDWHSDDDADGVIKI  596
             R+  +A D++ H+E+R ++   KGM V MSRRI V LY+EII L+P+WHSDDD  GVIK+
Sbjct  540   RVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKV  599

Query  597   VMTGAASDPLSWQQHIGNKRRRDGLAKRARDPKDPLRLVLVRDMWLTGFDAPCMNTMYVD  656
             VMTG++SDP S Q+HIG K+RR  L KR +D +D L+LV+VRDMWLTGFD P M+TMY+D
Sbjct  600   VMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYID  659

Query  657   KPMRGHGLMQAIARVNRVFRDKPGGLIVDYIGIAQNLKKALSDYTDSDQEKTGIDEADAV  716
             KPM+GH LMQAIARVNRVF+DKPGGLIVDY+GIA++LK AL +YT+SDQ +T+ID   AV
Sbjct  660   KPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAV  719

Query  717   AALLERYEIVSGIFHGFDYLPGIHGAPMERLQCLAGAIDWVLKWAEIEAGKAQSPEDKKK  776
               +L +Y+++ +++  +DY         ER   ++ ++D V+  +E E            
Sbjct  720   ELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDE------------  767

Query  777   AHRRYLDLVLELTKAYALASASDEAREIRDEIGFFQAVRAAIAKSTATGKLSQADKTFA-  835
              ++R++  V EL KA+AL ++   A+E+ DEI+FF+AV+A++ K     K +++ KT A 
Sbjct  768   -RQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAE  826

Query  836   ----VQQLIDRAVASAEIVDILKVAGIDSPDISILSEEFLLEIQGMekknlalealkkll  891
                 ++QL+ ++V + +++D+ +  G++ PD+SILS++FL +++G+ +KN+A+E L++LL
Sbjct  827   VEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLL  886

Query  892   ageITSRMRTNVVESRAFSRRLEDAVARYHAGALSAAEMINELIALAKDMKAAQRRGEDQ  951
              G++ S M+TN   S+ FS  L +++ +Y++ ++ ++ +I+ELI LAKD+K  Q+RG++ 
Sbjct  887   KGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNEL  946

Query  952   GLSPEEIAFYDALAENESAVEAMGSEQLRLIAHELLEQLRQNVTVDWHHRESARARMRVL  1011
             GL+++EIAFYDAL  +E+A  AM   +LR IAHEL   +++N++VDW  R+SA+A+MRV 
Sbjct  947   GLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVA  1006

Query  1012  VKRILKRYGYPPDLADEAVQTVLAQAEVL  1040
             V+R+LK+YGYPPDL   AV+ V+ QAE++
Sbjct  1007  VRRLLKKYGYPPDLQKMAVEQVVEQAELM  1035

72) Bpro_1944 in NC_007948


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  828 bits (3135),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 490/1048 (47%), Positives = 756/1048 (73%), Gaps = 33/1048 (3%)

Query  2     TEDQLEQETLAWLADVGYTHRYGPDIAHDGAMPERSSYRQVLLPFRLREAIQKLNPGIPT  61
              ED+LEQ  L WL  ++Y  + G +I+  G  PER S ++V+L  RL  A++K+N++I  
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62    AAREDALKQVLDLG-IPALLTANQHFHRLLVAGVPVR-YQKDGETRGDFVRLIDWADPER  119
                E A+ + L L   P LL  N  FH  L+ G+ +  Y+ +G++  ++V+++D  +P+ 
Sbjct  66    RFIEKAIHE-LTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQN  124

Query  120   NEWLAVNQFSIKGPHHTRRPDIVLFVNGLPLVLLELKNPADKNADIWRAYDQIQTYKEQI  179
             N+ LAVNQF++   + T+RPDIVLF+NGLP+V++ELKN+++   ++  +Y+Q++TYK +I
Sbjct  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  180   PDVFQTNEVLVITDGTEALMGSLSADAERFMAWRTIDGVTLDPLGEFNELQTLVRGVLAP  239
             P++F  NEVLV +DG ++  GSL+A+ +RFM+WR+ DG T ++ + +  L+ L+ G+L P
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGET-ESSSSLASLDVLINGMLNP  243

Query  240   AYFLDFLRYFVLFEDDGA--LVKKIAGYHQFHAVRAAILQVVDASRPGGSQKGGVVWHTQ  297
               +LD++RYFVLF+DDG   + K +A+YHQ+ AV  A+ + + AS   G  KGGV+WHTQ
Sbjct  244   KTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQ  303

Query  298   GSGKSITMTCFAARVMQEPAMENPTIVVITDRNDLDGQLFGVF-----SLAQDLLREQPV  352
             GSGKS+TM  F+++++Q   ++NPT+V++TDRNDLD QL++ F       +++LLR+ P 
Sbjct  304   GSGKSLTMVFFSGKLIQ--MLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPK  361

Query  353   QVSTRQDLRAKLANRPSGGIVFATIQKFMPGEDEDTFPMLSDRHNIVVIADEAHRTQYGF  412
             Q  TR++L++ L+   SGGIVF+T+QKF P ++E   + L++R N++V+ADEAHRTQYGF
Sbjct  362   QAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGF  420

Query  413   EAKLKGKQGQESYQGGYAQHLRDALPNATFVAFTGTPVSSTDRDTRAVFGDYIHIYDMQQ  472
             +AK  +K     Y  GYA+ LRDALPNATFV+FTGTPV+STD++T+ VFG+YI++YDM Q
Sbjct  421   NAKYDDKGEGIKY--GYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQ  478

Query  473   AKDDGATVAIYYESRLAKLSLIES-DLSQMdeevdelaeddeeSQQAVLKSRWAALEKVV  531
             A  DG+TV IYYESR+  L+L +S DL +  +++ E  E+D   +   LKS+W+ +E + 
Sbjct  479   AVADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQR---LKSKWSRIEALA  535

Query  532   GAEPRVASVAADLVTHFEERNKAQPGKAMVVAMSRDICVHLYNEIVKLRPDWHDADPEKG  591
             GA PRV ++A D++ HFE R++A  GK+M+V+MSR I V+LY+EI++L+P+WH  D +KG
Sbjct  536   GAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKG  595

Query  592   AVKIVMTGSASDKPLLRPHIYSAQTKKRLEKRFKDPADPLRLVIVRDMWLTGFDAPCVHT  651
              +K+VMTGS+SD   ++ HI + + +  LEKR KD  D L+LVIVRDMWLTGFD P +HT
Sbjct  596   VIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHT  655

Query  652   LYVDKPMKGHNLMQAIARVNRVFKDKQGGLVVDYIGIGNELKSAMKEYTQSKGRGRPTVD  711
             +Y+DKPMKGHNLMQAIARVNRVFKDK GGL+VDY+GI++ LK A+KEYT+S ++++ ++D
Sbjct  656   MYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAID  714

Query  712   AHEAYSVLAEKLDVLRSMLHGFDYTGFLTGGHK----TLAGAANHVLGLNTGSSRDGKKR  767
             ++ A  ++  K DV++ ML  +DY+ F +        T++ + + V+GL    + D ++R
Sbjct  715   TDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGL----GEDERQR  770

Query  768   FADTALAMSQAFTLCCTLDEAKAVREEVAFMQGVKVILTKKELTAK----RRTDEARELA  823
             F  T   +++AF+LC T   A+ + +E+AF ++VK  L K    +K    R+T    E  
Sbjct  771   FIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAE  830

Query  824   IRQIIssavvsesvvDIFDAVGLDKPNIGLLDDEFLAQVKNLPEKNLAVELLERLLEGEI  883
             I Q++S +VV+E V+D+++++GL++P++++L D+FL +V  L +KN+AVELL+RLL G++
Sbjct  831   INQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQV  890

Query  884   KSRFTSNVVQDKKFSEMLANVITRYQNRSIETAQVMEELVEMAKKFREAASRGESLGLTE  943
             KS   +N    K+FSEML+N I +Y++RSIET++V+EEL+++AK +++   RG+ LGL  
Sbjct  891   KSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNS  950

Query  944   DEVRFYDALANNESAVRELTDETLKKIAHELTENLRQNLSVDWSERESVRAKLRLMVKRI  1003
             DE+ FYDAL ++E+A + + D  L+ IAHELT  +++N+SVDWS R+S +AK+R+ V+R+
Sbjct  951   DEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRL  1010

Query  1004  LRKYKYPPDLQDAAVELVLKQAQVMGES  1031
             L+KY YPPDLQ  AVE V+ QA++M+ +
Sbjct  1011  LKKYGYPPDLQKMAVEQVVEQAELMASN  1038

73) Cag_1124 in NC_007514


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  827 bits (3132),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 509/1091 (47%), Positives = 781/1091 (72%), Gaps = 68/1091 (6%)

Query  3     HLTEHSIETFAIELLYKLGYEYIYAPDIAPDTSAGSVSEIRESFAQVLLLNRLQNAVKRI  62
             ++ E+ +E   +E L  L+Y+Y      + + S  +++  R S  +V+L +RL++A+++I
Sbjct  4     QFNEDDLEQVVLEWLESLSYDY----KKGNEISMTGLAPERKSDKDVVLHERLEKALRKI  59

Query  63    NHSIPADAQAEAIKEIQRIASPELLTNNETFHRLLTEGIPVSK-rvdgddrgdrvWLIDF  121
             N  I +     AI E+    SP+LL NN TFH  L +GI +     +G+   + V ++DF
Sbjct  60    NSDIHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDF  119

Query  122   KNPHNNEFVVANQFTIIENGNNKRPDVILFVNGIPLVVIELKNATYENTTMHSAFKQIDT  181
              +P+NN+F+  NQFT+++ +  KRPD++LF+NG+P+VVIELKN+T E   ++ ++ Q++T
Sbjct  120   EHPQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLET  179

Query  182   YKKTIPSLFTYNGFIVISDGLEAKAGTISSGFSRFMAWKSADGKAEASHLVSQLETLIQG  241
             YK  IP LFT+N  +V SDG+++KAG++++ + RFM+W+S DG +E+S  ++ L+ LI+G
Sbjct  180   YKMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLING  239

Query  242   MLNKETLIDLMRHFIVFEKSKKIDAKTGITTISTVKKLAAYHQYYAVNRAVESTLRASGY  301
             MLN  TL+DL+R F++F+     D+K  I+ I     LAAYHQYYAVN+AV+ +L AS+ 
Sbjct  240   MLNPKTLLDLIRYFVLFQD----DGKGHISKI-----LAAYHQYYAVNKAVDRALLASSG  290

Query  302   QLVKETPLSMVMESPESYGLRGVKKQPIGDKKGGVVWHTQGSGKSLSMVFYTGKIVLALD  361
             Q                           GD KGGV+WHTQGSGKSL+MVF++GK++  L+
Sbjct  291   Q---------------------------GDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLN  323

Query  362   NPTILVITDRNDLDDQLFDTFA-----ASKQLIRQEPVQAEDRNQLKELLKVASGGVVFT  416
             NPT++++TDRNDLD+QL+ TF      ++K L+RQ P QAE R++LK LL V SGG+VFT
Sbjct  324   NPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFT  383

Query  417   TIQKFQPNEGN-IYEKLSDRKNIVVIADEAHRTQYGFKAKTIDAKDEKGTIIGKKIVYGF  475
             T+QKF+P++ + I   L++RKN++V+ADEAHRTQYGF+AK     D+KG  I     YG+
Sbjct  384   TMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFNAKY----DDKGEGIK----YGY  435

Query  476   AKYMRDALPNATYLGFTGTPIENTDVNTPAVFGNYVDIYDIAQAVEDGATVRIYYESRLA  535
             AKY+RDALPNAT++GFTGTP+ +TD NT  VFGNY+D+YD++QAV DG+TV+IYYESR+ 
Sbjct  436   AKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVI  495

Query  536   KVSLSEEGKKLVAelddeleeeedVRAYSNTPQQKAKAKWTQLEALVGSENRIRNIAKDI  595
              ++L++ +  L    +D  E++       +  +Q+ K+KW+++EAL G+  R+  +AKDI
Sbjct  496   PLNLPQ-SLDLDEAYNDITEDQ------EEDVKQRLKSKWSRIEALAGAKPRVEALAKDI  548

Query  596   VAHFNQRQEVCNGKGMIVAMSRRIAADLYQAIINLKPEWHSEDLNKGVIKVVMTSASSDG  655
             + HF+ RQ+  +GKGMIV+MSRRIA DLY+ II LKPEWHS+D +KGVIKVVMT++SSD 
Sbjct  549   IQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDP  608

Query  656   PKISKHHTTKEQRRTLAERMKNPDDALQLVIVRDMWLTGFDAPSMHTLYIDKPMKGHNLM  715
               + +H   K +R  L  RMK+ +D LQLVIVRDMWLTGFD PSMHT+YIDKPMKGHNLM
Sbjct  609   TSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLM  668

Query  716   QAIARVNRVYNDKPGGLIVDYLGIASDLKKALAFYSDAGGKGDPTILQEQAVQLMLEKLE  775
             QAIARVNRV++DKPGGLIVDY+GIA  LK AL  Y+++ ++++ +I  ++AV+LML K +
Sbjct  669   QAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVELMLLKYD  727

Query  776   VVSQMYYGFAYETYFEADTSKKLSLILAAEEHILGL-EDGKKRYINEVTALSKAFAIAIP  834
             V+ +M Y + Y  +     S +   I  + + ++GL ED ++R+I+ VT L+KAFA+   
Sbjct  728   VIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCAT  787

Query  835   HDQAMDVKDEVSFFQTVKARLAKF----DGTGSGKTDEEIETTIRQVIDKALISEQVIDV  890
             +  A +++DE++FF++VKA L K+        + KT  E+E+ I Q++ +++++E+VIDV
Sbjct  788   EPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDV  847

Query  891   FDAAGIKKPDISILSEDFLMELKGMEHKNVALEVLKKLLNDEIKSRAKKNLVKSRTFLDM  950
             +++ G+ +PD+SILS+DFL ++ G+ +KNVA+E+L++LL++++KS  K N   S+ F +M
Sbjct  848   YQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEM  907

Query  951   LENSIKKYHNKILTAAEVIDELIKLGKEIVETDDEAKRMGLTDFEYAFYTAVANNDSAKE  1010
             L NSI+KY+++ + ++ VI+ELI+L+K+I + ++ ++ +GL   E AFY A+ ++++AK 
Sbjct  908   LGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKK  967

Query  1011  LMQQDKLRELAIVLTETIRQNTSIDWTIKESvkaklkvavkrvlrkYGYPPDMQLLATET  1070
              M++ KLR +A  LT T+++N S+DW+ ++S KAK++VAV+R+L+KYGYPPD+Q +A E 
Sbjct  968   AMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQ  1027

Query  1071  VLKQAEMIANE  1081
             V+ QAE++A++
Sbjct  1028  VVEQAELMASN  1038

74) Veis_3013 in NC_008786


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  826 bits (3127),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 476/1052 (46%), Positives = 743/1052 (71%), Gaps = 57/1052 (5%)

Query  19    GLGYRIEQEKDIGPDGPRPERESHDEVVLKKRFADAVARLNPGLPLEARQVAMRRLMQSE  78
             +L+Y   + ++I+  G  PER S+ +VVL  R+  A+ ++N+++     + A++ L    
Sbjct  20    SLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHPRFIEKAIHELTLEK  79

Query  79    LPTLLEENRRLHKLMTDGVEVEYYAEDGTLTTGTVALIDFKRPEQNDWLAVSQFVVIAGQ  138
              P LLE+N  +H  + +G+E+E Y ++G      V ++DF +P++ND LAV+QF V+ G+
Sbjct  80    SPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNNDFLAVNQFTVVNGD  139

Query  139   YQRRPDvvvfvnglplvvIELKALGNATL--LAAFQQLQNYKQQIAALFNTNALLVTSDG  196
             Y +RPD+V+F+NGLP+VVIELK   N T+    +++QL+ YK +I+ LF  N +LVTSDG
Sbjct  140   YTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTSDG  199

Query  197   VHARVGSLSADQERFMPWRTTDGTAITPKGKPELPTLIEGVFAHRRLLDLLRHFTVFDET  256
             ++++ GSL+A+ +RFM WR+ DG + ++ + + L  LI+G++  + LLDL+R F +F++ 
Sbjct  200   INTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPKTLLDLIRYFVLFQDD  259

Query  257   GSG-LVKIIAGYHQFHAVMRAVDSTLRASSQWQGVQEDPRDYGWSSVKTQAKGDRRAGVI  315
             G G + KI+A+YHQ+ AV +AVD +L ASS                    ++GD ++GVI
Sbjct  260   GKGHISKILAAYHQYYAVNKAVDRALLASS--------------------GQGDGKGGVI  299

Query  316   WHTQGSGKSLLMVFYARQLAQHVAMANPTLVVLTDRNDLDDQLFATFSRCRD-----FIR  370
             WHTQGSGKSL MVF++ +L Q   + NPTLV++TDRNDLD+QL++TF + ++     ++R
Sbjct  300   WHTQGSGKSLTMVFFSGKLIQ--MLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLR  357

Query  371   QTPVQANSREDLQKLLMRASGGVIFTTLQKFAESSQ-----PLTERHNVVVIADEAHRSQ  425
             QTP QA++R +L+ LL   SGG++FTT+QKF    +     +LTER NV+V+ADEAHR+Q
Sbjct  358   QTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQ  417

Query  426   YGFRAKLDARTGGVSYGFAKYLRDALPHASFIGFTGTPIEASGVNTRAVFGNYIDIYDIS  485
             YGF AK D +  G+ YG+AKYLRDALP+A+F+GFTGTP+ +++ NT+ VFGNYID+YD++
Sbjct  418   YGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMT  477

Query  486   RAVEDGATVLIYYESRLARIELDGDERHKIDAEVDAMIEDDSEAEQERFKKEWSTVEALV  545
             +AV DG+TV IYYESR+  ++L   +   +D   + + ED+ E  ++R+K  WS +EAL 
Sbjct  478   QAVADGSTVKIYYESRVIPLNLP--QSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALA  535

Query  546   GSDKRLALIAQDMVTHFEARMAALDGKAMAVCMSRHVCVRLYEEIVKLRPGWHSADDKAG  605
             G+  R+  +A+D++ HFE+R  A+ GK+M V MSR++ V LY+EI++L+P WHS DD  G
Sbjct  536   GAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKG  595

Query  606   ALKIVMTGAASDPAEWQQHVGNKARRDVLAKRARDIRDPLKLVIVCDMWLTGFDAPCMHT  665
              +K+VMTG++SDP+  Q+H+G K RR VL KR +D+ D L+LVIV DMWLTGFD P MHT
Sbjct  596   VIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHT  655

Query  666   MYVDKPMQGHGLMQAIARVNRVFRDKPAGLIVDYIGIAHYLKSALRQYSKSDRKNTGIDE  725
             MY+DKPM+GH LMQAIARVNRVF+DKP+GLIVDY+GIA+ LK AL++Y+ SD+ +T+ID 
Sbjct  656   MYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDT  715

Query  726   SKAVAMMMEKYEIVRNMYHGFDYT--LDGTAQERLVMMAGAIEWILDMQQKSAARESSRE  783
              KAV +M+ KY+++++M   +DY+        ER   ++ +++ ++++ +          
Sbjct  716   DKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGE----------  765

Query  784   GKKTAHRRYQDAVLALSKAFSLVSASDEARTIREEVGFFQAIRDALVK-----SSGAMGV  838
                  ++R+  +V  L+KAF+L ++   A+ + +E++FF+A++ +LVK       G    
Sbjct  766   ---DERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRK  822

Query  839   MGQERELAIRQIVSRAVISTEIVDILAAVGIKSPDISILSDQFLTEIAQMERKNLALEAL  898
                E E  I Q+VS++V++ +++D+  ++G+  PD+SILSD+FL ++  + +KN+A+E L
Sbjct  823   TPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELL  882

Query  899   RKLINDDIRSRSKANVVQSKAFSERLEEAMARYHANAITTAEVLQELITLAKDIRAERQR  958
              +L++++++S  K+N   SK FSE L +++ +Y++ +I T+ V++ELI LAKDI+ E+QR
Sbjct  883   NRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQR  942

Query  959   GEESGLSDEEIAFYDALAENDSALQMMGDDKLRLIAHELLVSLRNNISVDWAHRESARAQ  1018
             G+E GL+ +EIAFYDAL  +++A + M D KLR IAHEL  ++++N+SVDW+ R+SA+A+
Sbjct  943   GNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAK  1002

Query  1019  MRMLVKRILRKYGYPPDLQDEAVRTVLRQAEV  1050
             MR+ V+R+L+KYGYPPDLQ  AV  V+ QAE+
Sbjct  1003  MRVAVRRLLKKYGYPPDLQKMAVEQVVEQAEL  1034

75) RoseRS_0281 in NC_009523


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  826 bits (3127),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 462/1043 (45%), Positives = 746/1043 (72%), Gaps = 49/1043 (4%)

Query  6     HFCESTIESAALARLEASGWQVAHGPDLAPGTRTAERRDYGEVVLTGRLRDALARLNPDL  65
             +F E  +E   L +LE+ + +   G +++    ++ER+   +VVL  RL  AL ++N+D+
Sbjct  4     QFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDI  63

Query  66    PVEALDDAFRQLTQPQGADLIQRNRAQHRLLVDGVTVEHRNAGGAICGAQARVIDFDDPA  125
                 ++ A+++LT  ++++L++ N + H  L++G+ +E+ +  G       +++DF++P 
Sbjct  64    HPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQ  123

Query  126   NNDWLAVNQFTVVENKHTRRPDIVLFVNGLPLAVLELKNAADEKATIWTAWQQLQTYQAQ  185
             NND LAVNQFTVV+   T+RPDIVLF+NGLP+ V+ELKN+++E   +  + +QL+TY+ +
Sbjct  124   NNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  186   IPSLLATNAALVISDGLTARVGALGAGREWFKPWRTIHGEALADPHMPELQVVIEGLFAP  245
             IP L++ N  LV SDG+ ++ G+L A  ++F  WR+ +GE+ + + ++ L+V+I+G++ P
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNP  243

Query  246   RRFLDFVRDFIVFEDDGSGRLIKKMAGYHQFHAVQVAVAETLRAAELARTDQVAeergry  305
             + +LD++R F++F+DDG G++ K +A+YHQ+ AV+ AV  +L    LA ++Q     G  
Sbjct  244   KTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRAL----LASSGQGDGKGG--  297

Query  306   eagrrpggkpgdrrigVVWHTQGSGKSLTMVFYAGRIVREPAMENPTIVVLTDRNDLDDQ  365
                             V+WHTQGSGKSLTMVF++G++++   ++NPT+V++TDRNDLD+Q
Sbjct  298   ----------------VIWHTQGSGKSLTMVFFSGKLIQ--MLNNPTLVIVTDRNDLDNQ  339

Query  366   LFATFARCRD-----LLRQPPVQAESRVHLRQILSVAAGGVVFTTIHKFFPEEKGDRHPT  420
             L++TF + ++     LLRQ P QAE+R +L+ +LSV +GG+VFTT++KF PE++    ++
Sbjct  340   LYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAA  399

Query  421   LSERRNIVVIADEAHRSQYDFID-----------GFARHMRDALPNASFIGFTGTPIEKT  469
             L+ER+N++V+ADEAHR+QY+F             G+A+ +RDALPNA+F+GFTGTP+  T
Sbjct  400   LTERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVAST  459

Query  470   DANTRAVFGDYISIYDIQRAVEDGVTVPIYYESRLAKLALDETERPKIDPDFeevtegee  529
             D NT+ VFG+YI +YD+ +AV DG TV IYYESR+  L L ++    +D  ++++TE++E
Sbjct  460   DKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITEDQE  517

Query  530   verkerLKSKWAQFEAIVGAEKRLRLVARDIVEHFEKRLEALDGKAMIVCMSRRICVELY  589
              + K+RLKSKW+++EA+ GA  R+  +A+DI++HFE R +A+ GK+MIV MSRRI V+LY
Sbjct  518   EDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLY  577

Query  590   REIAQLRPQWAADDDERGAMKVVMTGSASDPLDWQPHIRNKPRREALANRFRNPGDPFRL  649
              EI +L+P+W +DDD++G +KVVMTGS+SDP   Q HI  K RR  L +R ++  D ++L
Sbjct  578   DEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQL  637

Query  650   VIVRDMWLTGFDAPSLHTMYIDKPMRGHGLMQAIARVNRVFHDKPGGLVVDYLGLAHELK  709
             VIVRDMWLTGFD PS+HTMYIDKPM+GH LMQAIARVNRVF DKPGGL+VDY+G+A+ LK
Sbjct  638   VIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLK  697

Query  710   AALATYTESGGTGQTTVDQQEAIALMQEKYEICCGILHGFDWSDWISGDPQARIGLLPAA  769
              AL  YTES + +QT++D + A+ LM  KY++  ++L  +D S   S     R   ++ +
Sbjct  698   EALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNT  756

Query  770   QEQVLS-RVNGKERFIQAVRDLTRAFALATLHEEAIKIRDDVAFFQAVQAALTK-----R  823
              + V++   + ++RFI++V +L +AFAL + +  A  + D++AFF+AV+A+L K     +
Sbjct  757   MDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPK  816

Query  824   APGEMRPEDELDHAVRQIIARAVAPAGVIDIFTAAGLQKPDISILSNEFLAEVRGMPQRN  883
                  +   E++  + Q+++++V   +VID++ + GL++PD+SILS++FL +V G+ Q+N
Sbjct  817   EGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKN  876

Query  884   LAVETLQKLLKGEISTRQRKNVVQARSFAEMLEQTIRRYQNRAIEAAQVIEELISLARDM  943
             +AVE L++LLKG++ +  + N   ++ F+EML ++I +Y++R+IE+++VIEELI LA+D+
Sbjct  877   VAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDI  936

Query  944   READARGKKLGLSEEELAFYDALETNDSAVKVLGDETLRTIARELVKTVRSNVTIDWTIR  1003
             ++ + RG+ LGL+ +E+AFYDAL ++++A K + D  LR+IA+EL KTV+ N+++DW+ R
Sbjct  937   KQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKR  996

Query  1004  ENVRAQLRVLVKRILRKYGYPPD  1026
             ++ +A++RV V+R+L+KYGYPPD
Sbjct  997   DSAKAKMRVAVRRLLKKYGYPPD  1019

76) Mpe_A0011 in NC_008825


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  825 bits (3125),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 491/1076 (46%), Positives = 763/1076 (71%), Gaps = 61/1076 (5%)

Query  2     TEDQLEQECLAWLADVGWQHRYGPDIAPDGDAPERDSYRQVLLLGRLRSAVAALNPTVPA  61
              ED+LEQ  L WL  ++ + + G +I+  G APER S ++V+L  RL  A+  +N+ + +
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62    AAREDAIRQVLDLG-TPVLLAANRHFHRLLVGGVPVQ-YQQDGETRGDFVRLVDWSDPSR  119
                E AI++ L L  +P LL  N  FH  L+ G+ ++ Y+++G++  ++V++VD  +P  
Sbjct  66    RFIEKAIHE-LTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQN  124

Query  120   NEWLAVNQFSVTGPHHTRRPDIVLFVNGLPLVLIELKNPADLNADVWKAFHQIQTYKAQI  179
             N+ LAVNQF+V   + T+RPDIVLF+NGLP+V+IELKN+++   +V  ++HQ++TYK +I
Sbjct  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  180   PDIFQTNEVLVVSDGSEALLGSLSADSERFMAWRTIDGNTLDPLGKFHELQTLVRGALAP  239
             P++F  NEVLV SDG ++  GSL+A+ +RFM+WR+ DG+T ++ + +  L+ L+ G L P
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGET-ESSSSLASLDVLINGMLNP  243

Query  240   AYLLDYLRYFVLFEDDG--QLAKKIAGYHQFHAVRAAIAQVVTASRPNSDARLRGKGGVV  297
               LLD +RYFVLF+DDG  +++K +A+YHQ+ AV  A+ + + AS  ++D    GKGGV+
Sbjct  244   KTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGD----GKGGVI  299

Query  298   WHTQGSGKSITMTCFAARVMQEPAMENPTIVVITDRNDLDGQLFGVF-----SLAQDLLR  352
             WHTQGSGKS+TM  F+++++Q   ++NPT+V++TDRNDLD QL++ F       +++LLR
Sbjct  300   WHTQGSGKSLTMVFFSGKLIQ--MLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLR  357

Query  353   EQPVQANTRQELRALLGNRPSGGIVFATIQKFMPGEDEDTFPLLSDRHNIVVMADEAHRT  412
             + P QA+TR+EL++LL+   SGGIVF+T+QKF P ++E   + L++R N++VMADEAHRT
Sbjct  358   QTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRT  416

Query  413   QYGFEAKLKTPKSALKASSELTTGNGQPPAHRAEFAPSAKYQVGYAQHLRDALPNATFVA  472
             QYGF+AK                G+G             KY  GYA+ LRDALPNATFV+
Sbjct  417   QYGFNAKYDD------------KGEG------------IKY--GYAKYLRDALPNATFVG  450

Query  473   FTGTPVSGEDRDTRAVFGDYISVYDMQQAKEDGATVAIYYESRLAKLGLKADEMATIdde  532
             FTGTPV++ D++T+ VFG+YI VYDM QA  DG+TV IYYESR+  L L   +   +D+ 
Sbjct  451   FTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNL--PQSLDLDEA  508

Query  533   vdelaedeeeSQQAKLKSRWAALEKVVGAAPRVAQVAADLVAHFEERNKAQTGKAMVVAM  592
              ++++ED+EE  + +LKS+W+ +E + GA PRV  +A D++ HFE R++A  GK+M+V+M
Sbjct  509   YNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTM  568

Query  593   SREICVHVYDEIVKLRPDWHSPDPEQGTIKIVMTGSASDKALLRPHIYSAQVKKRLEKRF  652
             SR I V++YDEI++L+P+WHS D ++G IK+VMTGS+SD + ++ HI + + +  LEKR 
Sbjct  569   SRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRM  628

Query  653   KNPADPLRMVIVRDMWLTGFDAPCVHTLYVDKPMKGHNLMQAIARVNRVFKDKQGGLVVD  712
             K+  D L++VIVRDMWLTGFD P +HT+Y+DKPMKGHNLMQAIARVNRVFKDK GGL+VD
Sbjct  629   KDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVD  688

Query  713   YIGIANELKSALKEYTAAQGRGRPTVDAHEAYSVLAEKLDALRGMLAGTNGHGFDYSGFL  772
             Y+GIA+ LK ALKEYT ++ +++ ++D++ A  ++  K D +++ML       +DYS F 
Sbjct  689   YVGIAESLKEALKEYTESD-QAQTAIDTDKAVELMLLKYDVIQDML-----YNLDYSKFN  742

Query  773   TGGHK----TLAGAANFVLGI-KEGKKRFADLALAMSKAFTLCCTLDEAKAVREEVAFFQ  827
             +        T++ + ++V+G+  + ++RF      ++KAF+LC T   A+ + +E+AFF+
Sbjct  743   SEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFK  802

Query  828   AVKVILTK----RDISAQKKMDEQRELAIRQIISAAVVSEEVVDIFDAVGLDKPNIGILD  883
             AVK  L K       +  +K   + E  I Q++S +VV+E+V+D+++++GL++P+++IL 
Sbjct  803   AVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILS  862

Query  884   DAFLAEVRNLPERNLAVELLERLLEGEIKSRFAGNVVQNKKFSDMLADVVQRYQNRSIEA  943
             D FL +V  L ++N+AVELL+RLL G++KS    N   +K+FS+ML++ +++Y++RSIE+
Sbjct  863   DDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIET  922

Query  944   AQVMEELVQMAKKFRAAAARGEQLGLTEDEVRFYDALANNESAVRELNDETLKKIAHELA  1003
             ++V+EEL+Q+AK ++    RG++LGL  DE+ FYDAL ++E+A + ++D  L+ IAHEL+
Sbjct  923   SKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELT  982

Query  1004  ENLRKNLTVDWSARESVQAKLRLMVKRILRKYKYPPDQQDAAVELVLQQAKALGEA  1059
               ++ N++VDWS R+S +AK+R+ V+R+L+KY YPPD Q  AVE V++QA  ++  
Sbjct  983   KTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

77) Thein_1571 in NC_015681


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  820 bits (3104),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 490/1061 (47%), Positives = 771/1061 (73%), Gaps = 51/1061 (4%)

Query  2     AESEVESAALAWLESLGWQIKHGPEIAPGEPFAERDDYQEVILPQRLKDALARLNPELPI  61
              E ++E   L WLESL+ + K G EI+     +ER   ++V+L +RL  AL ++N+++  
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62    EALDEAFRKLVNPPGATVEARNRAFHRMLVDGVTVEYRREDGSIAGAQARVIDFDDSENN  121
               ++ A++ L    ++ +   N +FH  L++G+ +E   ++G       +++DF++++NN
Sbjct  66    RFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNN  125

Query  122   DFLAVNQFTVTEGRHTRRPDIVLFVNGLPLVIIELKNPADEEATIWTAYQQLQTYKAELP  181
             DFLAVNQFTV +G  T+RPDIVLF+NGLP+V+IELKN+++E   +  +Y+QL+TYK  +P
Sbjct  126   DFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  182   TLFAFNELLVISDGLEARMGTLTAGREWFKPWRTISGERVEDEGVLQLEVLLKGVFDLER  241
              LF+FNE+LV SDG++++ G+LTA  ++F  WR+  GE     ++  L+VL++G+++   
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPKT  245

Query  242   FLELIRDFMVYEDDG-GRLSKKVAGYHQFHAVRVAVRETLRAAALAKDEGLRVREEIGRY  300
             +L+LIR F++++DDG G++SK +A+YHQ+ AV  AV  +L A++                
Sbjct  246   LLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASS----------------  289

Query  301   EVRGQGGRPGDRRIGVVWHTQGSGKSLTMVFYAGRIIREPAMQNPTVVVLTDRNDLDDQL  360
                GQG+  G    GV+WHTQGSGKSLTMVF++G++I+   ++NPT+V++TDRNDLD+QL
Sbjct  290   ---GQGDGKG----GVIWHTQGSGKSLTMVFFSGKLIQ--MLNNPTLVIVTDRNDLDNQL  340

Query  361   FGVFSRC-----QELLRQEPVQAKSRAHLRELLSREAGGIIFTTIQKFFPDEKGDQHPLL  415
             ++ F +      + LLRQ P QA +R +L+ LLS E+GGI+FTT+QKF P+++    + L
Sbjct  341   YSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAAL  400

Query  416   SSRRNIVVIADEAHRSQYDFID-----------GFARHIRDALPNASFIAFTGTPIELED  464
             + R+N++V+ADEAHR+QY+F             G+A+ +RDALPNA+F++FTGTP+   D
Sbjct  401   TERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTD  460

Query  465   RNTRAVFGDYISIYDIQRAVEDGATVPIYYESRlaklalpkelkpkIDeefeevtereev  524
             +NT+ VFG+YI +YD+ +AV DG+TV IYYESR   ++L       +DE ++++TE +E 
Sbjct  461   KNTQMVFGNYIDVYDMTQAVADGSTVKIYYESR--VIPLNLPQSLDLDEAYNDITEDQEE  518

Query  525   erkeklktkWAQLEAIVGAEPRLRMIAKDIVKHFERRLEALDGKGMIVCMSRRICVDLYN  584
             + K++LK+KW+++EA+ GA PR+  +AKDI++HFE R +A+ GKGMIV MSRRI VDLY+
Sbjct  519   DVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYD  578

Query  585   QIIHLRPDWHHEDDDKGVIKVVMTGSASDPPEWQPHIRNKERREFLARRFRDPNDPLKLV  644
             +II+L+P+WH +DDDKGVIKVVMTGS+SDP   Q HI  K RR  L +R +D ND L+LV
Sbjct  579   EIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLV  638

Query  645   IVRDMWLTGFDCPSLHTMYIDKPMRGHGLMQAIARVNRVFRDKPGGLVVDYIGLARELKQ  704
             IVRDMWLTGFD PS+HTMYIDKPM+GH LMQAIARVNRVF+DKPGGL+VDY+G+A  LK+
Sbjct  639   IVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKE  698

Query  705   ALAVYTESGGKGRTALDQEEAVAVMQEKYEICCDLFHGFDWSAWKTGTPEERLALLPAAQ  764
             AL  YTES ++++TA+D + AV +M  KY++  D++  +D S  ++    ER   ++ + 
Sbjct  699   ALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTM  757

Query  765   EHILA-QPDGKDRFVKAVLELSKAFALAVPHEEALRIRDDVAFFQAVRSALVK--RAPLD  821
             + +++   D ++RF+K+V EL+KAFAL   +  A  + D++AFF+AV+++LVK  ++P +
Sbjct  758   DYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKE  817

Query  822   ARPQ---EELDYALRQLVDRAVDPEGVVDIFAAAGLKKPDISILSEEFLAEIQDMPQKNL  878
             ++ +    E++  + QLV ++V  E+V+D++ + GL +PD+SILS++FL +++++ QKN+
Sbjct  818   GKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNV  877

Query  879   AVELLRKLLQGEIRTRRRKNVVQARRFSEMLERALRRYQNRAIEAAQVIEELIALAREMR  938
             AVELL +LL+G++++  + N   ++RFSEML  ++ +Y++R+IE+++VIEELI LA++++
Sbjct  878   AVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIK  937

Query  939   KSDrrgeelglseeeVAFYDALAANESAVEVLGDKTLRKIAQELVRLVRENVTVDWAQRE  998
             + ++RG+ELGL+ +E+AFYDAL ++E+A   + DK LR IA+EL + V+EN++VDW++R+
Sbjct  938   QEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRD  997

Query  999   NVRAYLRVLVKRTLRKYGYPPDKQEEATQTVLKQAEVLGGE  1039
             + +A +RV V+R L+KYGYPPD Q  A + V+ QAE+++++
Sbjct  998   SAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

78) Acav_4671 in NC_015138


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  820 bits (3106),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 497/1081 (46%), Positives = 763/1081 (71%), Gaps = 66/1081 (6%)

Query  2     TEDQLEQDALSWLVEVGYTHLSGYDIAPDGPAPERDSFRQVLLPQRLRDAIARLNPHIPL  61
              ED+LEQ  L WL  ++Y    G +I+  G APER S ++V+L +RL  A+ ++N++I  
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62    AAREDAFKQVQDLGTPVLLSANRHFHRLLVGGVPVQ-YQQDGETRGDFVRLVDWGNAQAN  120
                E A+ ++    +P LL  N  FH  L+ G+ ++ Y+++G++  ++V++VD  ++Q N
Sbjct  66    RFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNN  125

Query  121   EWLAVNQFSLKGPHHTRRPDIILFLNGLPVVLLELKNPADENASIWKAYEQIQTYKAQIP  180
             + LAVNQF++   + T+RPDI+LF+NGLP+V++ELKN+++E  ++  +Y+Q++TYK +IP
Sbjct  126   DFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  181   DVFQYNEVLVVSDGSEALMGSLSSNAERFMAWRTIDGVALDPLGQFNELETLVRGALAPA  240
             ++F +NEVLV SDG ++  GSL++N +RFM+WR+ DG + ++ + +  L+ L+ G L P 
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGET-ESSSSLASLDVLINGMLNPK  244

Query  241   YVLDYLRYFVLFEDDG-GLVKKI-AGYHQFHAVRAAIEQVVAASRPSGSHKGGVVWHTQG  298
              +LD +RYFVLF+DDG G + KI A+YHQ+ AV  A+++ + AS   G  KGGV+WHTQG
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQG  304

Query  299   SGKSITMTCFAARVMQEPAMQNPTIVVITDRNDLDGQLFGVF-----SLAQDLLREQPVQ  353
             SGKS+TM  F+++++Q   ++NPT+V++TDRNDLD QL++ F       +++LLR+ P Q
Sbjct  305   SGKSLTMVFFSGKLIQ--MLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQ  362

Query  354   VETRQDLRAKLANRPSGGIVFATIQKFMPGEDEDTFPVLSNRSNIVVIADEAHRTQYGFE  413
              ETR++L++ L+   SGGIVF+T+QKF P ++E   + L++R N++V+ADEAHRTQYGF+
Sbjct  363   AETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFN  421

Query  414   AKLKTIRRKAGQPEgaatarttgdaassaLTVDFVPPAYEVEHKYQAGYAQHLRDALPHA  473
             AK     +  G                                KY  GYA+ LRDALP+A
Sbjct  422   AKYDD--KGEGI-------------------------------KY--GYAKYLRDALPNA  446

Query  474   TFVAFTGTPVSSEDRDTRAVFGDYIHVYDMQQAKEDGATVAIYYESRLAKLSLKQDELPH  533
             TFV+FTGTPV+S D++T+ VFG+YI+VYDM QA  DG+TV IYYESR+  L+L Q    +
Sbjct  447   TFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQS--LD  504

Query  534   LdeevdelaedeeeSTQARLKSRWAALEKVVGAEPRVAAVAADLVKHFEERNKAQSGKAM  593
             LDE  ++++ED+EE  + RLKS+W+ +E + GA PRV A+A D+++HFE R++A  GK+M
Sbjct  505   LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGM  564

Query  594   VVAMSRDICVHLYDEITRLRPGWHDADPEKGAVKIVMTGSASDKALLRPHIYGGQVKKR-  652
             +V+MSR I V+LYDEI RL+P WH  D +KG +K+VMTGS+SD + ++ HI  G  K+R 
Sbjct  565   IVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHI--GPKKRRS  622

Query  653   -LEKRFKDPADPLRLVIVRDMWLTGFDAPCVHTLYVDKPMKGHNLMQAIARVNRVFKDKQ  711
              LEKR KD  D L+LVIVRDMWLTGFD P +HT+Y+DKPMKGHNLMQAIARVNRVFKDK 
Sbjct  623   VLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKP  682

Query  712   GGLVVDYIGIGNELKAAMKEYTASKGRGKPTVDAHEAYAVLEEKLDVLRAMLHGFDYSGF  771
             GGL+VDY+GI++ LK A+KEYT S ++++ ++D++ A  ++  K DV++ ML  +DYS F
Sbjct  683   GGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKF  741

Query  772   LTGGHK----VLAGAANHVLGLKSEGRRDGKKRFADTALAMSKAFTLCCTLDEAKAVREE  827
              +         ++ + + V+GL  + R+    RF  T   ++KAF+LC T   A+ + +E
Sbjct  742   NSEKKSERYYTISNTMDYVIGLGEDERQ----RFIKTVTELGKAFALCATEPTAQELNDE  797

Query  828   VAFMQAVKV----ILtkkditqqkktdEQRELAIRQIIGSAVVSDRVVDIFDAVGLDKPN  883
             +AF +AVK     +L      + +KT  + E  I Q+++ +VV++ V+D+++++GL++P+
Sbjct  798   IAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPD  857

Query  884   IGLLDDDFLAQVKNLPERNLAVELLERLLEGEIKSRFATNVVQERKFSELLGNVIKRYQN  943
             +++L DDFL +V  L ++N+AVELL+RLL G++KS   TN    ++FSE+LGN I++Y++
Sbjct  858   LSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNS  917

Query  944   RSIETAQVMEELVEMARKFREAASRGESLGLTDDEVKFYDALILNESAARELSDETLKKI  1003
             RSIET++V+EEL+++A+ +++   RG+ LGL  DE+ FYDAL+ +E+A + + D  L+ I
Sbjct  918   RSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAI  977

Query  1004  AHELTTSLRQNISVDWAHRESVRAKLRLMVKRILRKYKYPPDLADAAVELVLEQAETIGD  1063
             AHELT ++++N+SVDW+ R+S +AK+R+ V+R+L+KY YPPDL   AVE V+EQAE ++ 
Sbjct  978   AHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMAS  1037

Query  1064  E  1064
             +
Sbjct  1038  N  1038

79) Anacy_6058 in NC_019773


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  820 bits (3104),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 482/1063 (46%), Positives = 767/1063 (73%), Gaps = 40/1063 (3%)

Query  1     MKSALTEAEIEAYQLQLLQTLGYSYCNGYDIQPEGSNQERESFGEVILKHRLPQSISRIN  60
             M+  + E ++E   L+ L++L+Y Y +G +I   G   ER S  +V+L +RL +++ +IN
Sbjct  1     MNFQFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKIN  60

Query  61    PTIPYDAQYQAQREIFNIA---SSDLLNNNEIFHKYLTEGITVE-YQKDGETRGQPVQLI  116
             + I  ++++  ++ I +++   S++LL+NN  FH  L +GI +E Y+ +G++  + V+++
Sbjct  61    SDI--HPRF-IEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIV  117

Query  117   DWEHPENNEFVAVNQFTVIEDNHNHRPDIVLFINGLPLVVIELKNAVDEKANLNAAYNQL  176
             D EHP+NN+F+AVNQFTV++++   RPDIVLFINGLP+VVIELKN+ +E   ++ +Y+QL
Sbjct  118   DFEHPQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQL  177

Query  177   QTYKQRIPSLFTYNALLVISDGLSARAGSLTAGFNRFSTWKVPPSAGEGNRQNPEINELE  236
             +TYK RIP LFT+N +LV SDG++++AGSLTA ++RF TW+   +  E++   + +  L+
Sbjct  178   ETYKMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESS---SSLASLD  234

Query  237   IltngllnqqtlldlIRYFTVFEKSKTTDLKTDIVSITTVKKIAAYHQYYAVNKAIQSII  296
             +L NG+LN +TLLDLIRYF +F+     ++          K +AAYHQYYAVNKA++  +
Sbjct  235   VLINGMLNPKTLLDLIRYFVLFQDDGKGHIS---------KILAAYHQYYAVNKAVDRAL  285

Query  297   TASSPEGNHKGGVLWHTQGSGKSLSMVFLAGKLVLNKSLQNPTIVMLTDRNDLDDQLFDT  356
              ASS +G+ KGGV+WHTQGSGKSL+MVF++GKL+  + L+NPT+V++TDRNDLD+QL+ T
Sbjct  286   LASSGQGDGKGGVIWHTQGSGKSLTMVFFSGKLI--QMLNNPTLVIVTDRNDLDNQLYST  343

Query  357   FAGCQQ-----LLRQDPQQAENRDQVRELLNTNSGGIIFTTVQKFSPADGETLYPQISPR  411
             F   +      LLRQ P+QAE R +++ LL+ +SGGI+FTT+QKF P + ET+ + ++ R
Sbjct  344   FVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTER  403

Query  412   PNIIVLADEAHRSQYGFTATQVDIKDENGNITGKRTKYGFAKYIRDALPNATFIGFTGTP  471
              N+IV+ADEAHR+QYGF A   D         G   KYG+AKY+RDALPNATF+GFTGTP
Sbjct  404   KNVIVMADEAHRTQYGFNAKYDD--------KGEGIKYGYAKYLRDALPNATFVGFTGTP  455

Query  472   VEQTDKNTPAIFGEYIDIYDISQAVKDGATVPIYYESRLVKVDLDAAGRQlldeldedls  531
             V  TDKNT  +FG+YID+YD++QAV DG+TV IYYESR++ ++L + + +L +  ++   
Sbjct  456   VASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNL-PQSLDLDEAYNDITE  514

Query  532   fedlsTTQKAKAKQTQLEAIVGSTKRIKQIALDIVTHFEARQQVNKGKAMIVTMSRLIAV  591
              ++    Q+ K+K +++EA+ G+  R+  +A DI+ HFE+RQQ  KGK+MIVTMSR IAV
Sbjct  515   DQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAV  574

Query  592   NLYDAIIQLRPDWHNADINLGKIKVVMTTSASDEGNLVKHHTSKGQRQTLAQRLKDPDNS  651
             +LYD II+L+P+WH+ D + G IKVVMT S+SD  ++ +H  +K +R  L +R+KD ++ 
Sbjct  575   DLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDE  634

Query  652   LELAIVCDMWLTGFDAPCLHTMYIDKPLKSHNLMQAIARINRVYFEKTGGLIVDYLGLAA  711
             L+L IV DMWLTGFD P +HTMYIDKP+K+HNLMQAIAR+NRV+ +K GGLIVDY+G+A 
Sbjct  635   LQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAE  694

Query  712   ELKKALSFYSQSGGQGALTLDQDVAVGILLAKLEIVKQIISGFAYQHYFHTDTGEKLNIL  771
              LK AL  Y++S +Q+  ++D D AV ++L K +++++++  + Y  +     +E+   +
Sbjct  695   SLKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTI  753

Query  772   KNAVNYVA--TPTIKDRFLTEVHALSQAHSLAVPHPQALAASETISFFQAIQASLRK-LE  828
              N+++YV       ++RF+  V  L++A +L   +P A   ++ I+FF+A++A+L K L+
Sbjct  754   SNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQ  813

Query  829   SSGDGGGLNNQ-DIETAIRQVVDQALVSDAVINIFDEAGIKNPDISIISAEFMAEVRGME  887
             ++ +G   +   ++E+ I Q+V Q++V++ VI++++  G+ +PD+SI+S +F+ +V G+ 
Sbjct  814   PPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLK  873

Query  888   HQNLAVELLQKLLKDEVKTRSRTNIVQSRKLSEMLEDALRRYRNQVISVTDVLEALLELA  947
             ++N+AVELL++LLK++VK+  +TN   S+++SEML +++ +Y ++ I  + V+E L++LA
Sbjct  874   QKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLA  933

Query  948   KDTKAADARGEELGLEPFELAFYDALSQNQSAQDIMGVDKLRELAIVLVERIRQNASIDW  1007
             KD K  + RG+ELGL++ E+AFYDAL  +++A+  M   KLR +A  L   +++N S+DW
Sbjct  934   KDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDW  993

Query  1008  NLKESVRSRMKIAVKRLLRKYGYPPDMEALAMELVLEQAKVFT  1050
             + ++S +++M++AV+RLL+KYGYPPD++ +A+E V+EQA + +
Sbjct  994   SKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMA  1036

80) hsdR2 in NC_014145


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  820 bits (3103),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 481/1046 (46%), Positives = 756/1046 (73%), Gaps = 31/1046 (2%)

Query  4     LNEDHLEQATLQWLSALGWQTAHGPDISPPDAKTHGTERDTYRQVCLSHRIEAAIQRLNP  63
             +NED+LEQ  L+WL +L+ +   G +IS  +    + ER + ++V L +R+E A++++N+
Sbjct  5     FNEDDLEQVVLEWLESLSYDYKKGNEISMTGL---APERKSDKDVVLHERLEKALRKINS  61

Query  64    GIPSTAQVEALRQVLSPNTPGLIAANRQFHRWLVEGVPVE-YQKDGETRGDRVRLIDFSD  122
             +I +     A++++   ++P L+  N  FH  L++G+ +E Y+ +G++  + V+++DF +
Sbjct  62    DIHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEH  121

Query  123   VGRNDWLAVNQFSIQGPKHTRRPDVILFINGLPLVTLELKNPGDENADIWGAFNQLQAYK  182
                ND LAVNQF++     T+RPD++LFINGLP+V +ELKN+ +E  ++ ++++QL++YK
Sbjct  122   PQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYK  181

Query  183   EDIPDLFVYNELLVITDGISARLGSLTANRERFMAWRTIDGHATDPLGPMRELETLVHGA  242
               IP+LF +NE+LV +DGI+++ GSLTAN +RFM+WR+ DG+ T++ +++  L+ L++G 
Sbjct  182   MRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGE-TESSSSLASLDVLINGM  240

Query  243   FDRKTLLDYLQHFILFEDDG-GLVKKV-AGYHQFHAVRAVVESVLKASAPGGSRKGGVVW  300
             ++ KTLLD ++ F+LF+DDG G + K+ A+YHQ+ AV   V+  L AS+  G  KGGV+W
Sbjct  241   LNPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIW  300

Query  301   HTQGAGKSIEMTCLGGMLMQNPQMGNPTLLVVTDRNDLDNQLFGVFA-----GATELLHE  355
             HTQG+GKS+ M  ++G L+Q   + NPTL++VTDRNDLDNQL++ F      ++  LL++
Sbjct  301   HTQGSGKSLTMVFFSGKLIQ--MLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQ  358

Query  356   TPVQADTRPRLRELLGNRPSGGIVFTTIQKFAPGEDEDTFPVLSERSNIVVVCDEAHRSQ  415
             TP QA+TR  L+ LL+   SGGIVFTT+QKF P ++E   + L+ER N++V+ DEAHR+Q
Sbjct  359   TPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQ  417

Query  416   YGFSADIKKDGK-VTYGYAQYLRDALPQATFVAFTGTPVSLEDRDTRAVFGDYVHIYDVE  474
             YGF+A     G  + YGYA+YLRDALP+ATFV+FTGTPV+  D++T+ VFG+Y+++YD+ 
Sbjct  418   YGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMT  477

Query  475   QAVKDGATVPIYYesrlaklelseesstlldgdideltedeeddASKAAKLR-RWAALEK  533
             QAV DG+TV IYYESR+  L+L++        +     ++         +L+ +W+ +E 
Sbjct  478   QAVADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQE----EDVKQRLKSKWSRIEA  533

Query  534   LVGAPPRIQKVAADIVEHFENRLAALDGKAMVVGMSREICVHLYDALVALRPEWHDPDPD  593
             L GA PR++ +A DI++HFE R  A+ GK+M+V MSR I V+LYD ++ L+PEWH  D D
Sbjct  534   LAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDD  593

Query  594   KGAIKIIMTGSASDKPMLKPHIYTKEVKKRLERRYKDPADPFKLVIVRDMWLTGFDAPCM  653
             KG IK++MTGS+SD   ++ HI  K  +  LE+R KD  D ++LVIVRDMWLTGFD P M
Sbjct  594   KGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSM  653

Query  654   HTMYIDKPMRGHSLMQAIARVNRVFKDKPGGLVVDYIGIANELKAALKDYTLAHGKGRPT  713
             HTMYIDKPM+GH+LMQAIARVNRVFKDKPGGL+VDY+GIA+ LK ALK+YT   ++++ +
Sbjct  654   HTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYT-ESDQAQTA  712

Query  714   IDTHEALRLLLEKMEVLHGILHGCDYADF----RAQAWQLLPKVANHILG-QDDGKKRFA  768
             IDT+ A+ L+L K +V++++L   DY+ F    +++    +++  + ++G  +D ++RF 
Sbjct  713   IDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFI  772

Query  769   DAVLSASKAFALCCTLDEALEHRDELAFLQAVKAALTK--HTTQDKKL--SDEQKEHALR  824
              +V   +KAFALC T   A E  DE+AF++AVKA+L K  +  ++ K   +  + E  + 
Sbjct  773   KTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEIN  832

Query  825   QILSKAVVSAEVVDIFQAAGLNKPDIGILSDEFLDDVRHMKERNLAVELLERLLKDDIKT  884
             Q++S++VV+ +V+D++Q+ GL++PD++ILSD+FL DV  +K++N+AVELL+RLLK+++K+
Sbjct  833   QLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKS  892

Query  885   RFKTNVVKAAKYSELLQESLKRYQNRAIETAQVIEELIAMAKQFHEEAIKGAALGLSPDE  944
               KTN   + ++SE+L +S+++Y++R+IET++VIEELI +AK++ +E  +G  LGL++DE
Sbjct  893   LMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDE  952

Query  945   RAFYDALAANESAVRELGDETLKKIAVELTLKLRNSVTVDWSVRDSVRASLRVMVKTLLR  1004
              AFYDAL ++E+A + + D  L+ IA ELT  ++++++VDWS RDS +A +RV V+ LL+
Sbjct  953   IAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLK  1012

Query  1005  RYKYPPDKQEEATETVLRQAEMLSAE  1030
             +Y YPPD Q  A E V+ QAE+++++
Sbjct  1013  KYGYPPDLQKMAVEQVVEQAELMASN  1038

81) K649_10280 in NC_021081


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  817 bits (3093),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 483/1035 (47%), Positives = 758/1035 (74%), Gaps = 46/1035 (4%)

Query  27    GPEIAPDQPQAERADYGQVVLEQRLRDALVRLNPGLPAETLEDASRKLTQPEGSDLIQRN  86
             G EI+     +ER    +VVL++RL  AL ++N+++ +  +E A + LT   +++L++ N
Sbjct  28    GNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHPRFIEKAIHELTLEKSPNLLENN  87

Query  87    RALHRLLVNGVNVEYRDKDGEIRGAQARVIDFDNPANNDWLAVNQFSVVERGTLQRAPSM  146
              ++H  L+NG+++E  D +G+      +++DF++P NND LAVNQF+VV+ +        
Sbjct  88    LTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNNDFLAVNQFTVVNGD--------  139

Query  147   QRASTRRPDVVLFVNGLPLAVVELKNAADEDATIWTAWQQLQTYQAEIPSLFVPNAVLVI  206
                 T+RPD+VLF+NGLP+ V+ELKN+++E   +  + +QL+TY+  IP LF  N VLV 
Sbjct  140   ---YTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVT  196

Query  207   SDgvearvgvvgagreWFKPWRTVAGDRLADSHVPELQVVLEGVFAPRRFLDLVRDFIVF  266
             SDG++++ G + A  ++F  WR+  G+  + S ++ L+V+++G++ P+ +LDL+R F++F
Sbjct  197   SDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPKTLLDLIRYFVLF  256

Query  267   EDDGSGRLIKKMAGYHQFHAVQVAVQETLRAALALREGRGGQSGDRRIGVVWHTQGSGKS  326
             +DDG G++ K +A+YHQ+ AV+ AV+ +L A+ +  +G+GG        V+WHTQGSGKS
Sbjct  257   QDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGG--------VIWHTQGSGKS  308

Query  327   LTMAFYAGRIIREPAMENPTLVVLTDRNDLDDQLYSTFARCHE-----LLRQPPVQAESR  381
             LTM F++G++I+   ++NPTLV++TDRNDLD+QLYSTF +        LLRQ P QAE+R
Sbjct  309   LTMVFFSGKLIQ--MLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETR  366

Query  382   AHLRELLSVQSGGVVFTTIQKFMPEEKGDRHPRLSERRNIVVIADEAHRSQYDFID----  437
              +L+ LLSV+SGG+VFTT+QKF PE++    + L+ER+N++V+ADEAHR+QY+F      
Sbjct  367   KELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFNAKYDD  426

Query  438   -------GFARHMRDALPNASFIGFTGTPIELQDANTRAVFGDYISIYDIQRAVEDGATV  490
                    G+A+ +RDALPNA+F+GFTGTP+   D NT+ VFG+YI +YD+ +AV DG+TV
Sbjct  427   KGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTV  486

Query  491   PIYYESRQAKLDLPEELKPKIDeefeevtegeelerkeKLKSKWAQLEAIVGAERRLRLV  550
              IYYESR   L+LP+ L   +DE ++++TE++E + K++LKSKW+++EA+ GA  R+  +
Sbjct  487   KIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEAL  544

Query  551   AKDIVQHFEQRLEALDGKAMIVCMSRRICVELYREIVRLRPQWHHDDDDKGAIKIVMTGS  610
             AKDI+QHFE R +A+ GK+MIV MSRRI V+LY EI+RL+P+WH DDDDKG IK+VMTGS
Sbjct  545   AKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGS  604

Query  611   ASDPPDWQPHIRNKPRREALAKRFRDPEDAFKLVIVRDMWLTGFDAPSLHTMYLDKPMRG  670
             +SDP   Q HI  K RR  L KR +D +D ++LVIVRDMWLTGFD PS+HTMY+DKPM+G
Sbjct  605   SSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKG  664

Query  671   HGLMQAIARVNRVFRDKPGGLVVDYLGLATELKAALATYTESGGTGRTALNQEEAVALMR  730
             H LMQAIARVNRVF+DKPGGL+VDY+G+A  LK AL  YTES + ++TA++ + AV LM 
Sbjct  665   HNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVELML  723

Query  731   EKYEICRGLFYGFDWSRWVTGTPAERLSLLPAAQEHILA-QENGKDRLLRAARELSQAFA  789
              KY++ ++++Y +D S+  +   +ER   ++ + + +++  E+ ++R++++  EL++AFA
Sbjct  724   LKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFA  783

Query  790   LAVPHEEALRIRddvaffqavqavLAK--RAPGQA---RPEEELEQAVRQIIARAVAPEG  844
             L   +  A  + D++AFF+AV+A L K  ++P ++   +   E+E  + Q+++++V  E+
Sbjct  784   LCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTED  843

Query  845   VVDIFAAAGLKRPDISILSDEFLSEVRGMPQKNLAVELLQKLLKGEIRARGQKNLVQARS  904
             V+D++ + GL +PD+SILSD+FL +V G+ QKN+AVELL++LLKG++++  + N   ++ 
Sbjct  844   VIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKR  903

Query  905   FAEMLERTIRRYQNRAIEAAQVIEELIALARDMREANARGEKLGLSEDELAFYDALEAND  964
             F+EML  +I +Y++R+IE+++VIEELI LA+D+++ + RG+ LGL+ DE+AFYDAL +++
Sbjct  904   FSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHE  963

Query  965   SAVKVLGDATLREIARELVQTVRNNVTLDWTLRENVRAQLRVLVKRTLRKYGYPPDKQEK  1024
             +A K + D  LR IA+EL +TV++N+++DW+ R++ +A++RV V+R L+KYGYPPD Q  
Sbjct  964   TAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKM  1023

Query  1025  ATQTVLEQAALLSAQ  1039
             A + V+EQA L++++
Sbjct  1024  AVEQVVEQAELMASN  1038

82) Mrub_2450 in NC_013946


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  817 bits (3093),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 483/1035 (47%), Positives = 758/1035 (74%), Gaps = 46/1035 (4%)

Query  27    GPEIAPDQPQAERADYGQVVLEQRLRDALVRLNPGLPAETLEDASRKLTQPEGSDLIQRN  86
             G EI+     +ER    +VVL++RL  AL ++N+++ +  +E A + LT   +++L++ N
Sbjct  28    GNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHPRFIEKAIHELTLEKSPNLLENN  87

Query  87    RALHRLLVNGVNVEYRDKDGEIRGAQARVIDFDNPANNDWLAVNQFSVVERGTLQRAPSM  146
              ++H  L+NG+++E  D +G+      +++DF++P NND LAVNQF+VV+ +        
Sbjct  88    LTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNNDFLAVNQFTVVNGD--------  139

Query  147   QRASTRRPDVVLFVNGLPLAVVELKNAADEDATIWTAWQQLQTYQAEIPSLFVPNAVLVI  206
                 T+RPD+VLF+NGLP+ V+ELKN+++E   +  + +QL+TY+  IP LF  N VLV 
Sbjct  140   ---YTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVT  196

Query  207   SDgvearvgvvgagreWFKPWRTVAGDRLADSHVPELQVVLEGVFAPRRFLDLVRDFIVF  266
             SDG++++ G + A  ++F  WR+  G+  + S ++ L+V+++G++ P+ +LDL+R F++F
Sbjct  197   SDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPKTLLDLIRYFVLF  256

Query  267   EDDGSGRLIKKMAGYHQFHAVQVAVQETLRAALALREGRGGQSGDRRIGVVWHTQGSGKS  326
             +DDG G++ K +A+YHQ+ AV+ AV+ +L A+ +  +G+GG        V+WHTQGSGKS
Sbjct  257   QDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGG--------VIWHTQGSGKS  308

Query  327   LTMAFYAGRIIREPAMENPTLVVLTDRNDLDDQLYSTFARCHE-----LLRQPPVQAESR  381
             LTM F++G++I+   ++NPTLV++TDRNDLD+QLYSTF +        LLRQ P QAE+R
Sbjct  309   LTMVFFSGKLIQ--MLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETR  366

Query  382   AHLRELLSVQSGGVVFTTIQKFMPEEKGDRHPRLSERRNIVVIADEAHRSQYDFID----  437
              +L+ LLSV+SGG+VFTT+QKF PE++    + L+ER+N++V+ADEAHR+QY+F      
Sbjct  367   KELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFNAKYDD  426

Query  438   -------GFARHMRDALPNASFIGFTGTPIELQDANTRAVFGDYISIYDIQRAVEDGATV  490
                    G+A+ +RDALPNA+F+GFTGTP+   D NT+ VFG+YI +YD+ +AV DG+TV
Sbjct  427   KGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTV  486

Query  491   PIYYESRQAKLDLPEELKPKIDeefeevtegeelerkeKLKSKWAQLEAIVGAERRLRLV  550
              IYYESR   L+LP+ L   +DE ++++TE++E + K++LKSKW+++EA+ GA  R+  +
Sbjct  487   KIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEAL  544

Query  551   AKDIVQHFEQRLEALDGKAMIVCMSRRICVELYREIVRLRPQWHHDDDDKGAIKIVMTGS  610
             AKDI+QHFE R +A+ GK+MIV MSRRI V+LY EI+RL+P+WH DDDDKG IK+VMTGS
Sbjct  545   AKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGS  604

Query  611   ASDPPDWQPHIRNKPRREALAKRFRDPEDAFKLVIVRDMWLTGFDAPSLHTMYLDKPMRG  670
             +SDP   Q HI  K RR  L KR +D +D ++LVIVRDMWLTGFD PS+HTMY+DKPM+G
Sbjct  605   SSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKG  664

Query  671   HGLMQAIARVNRVFRDKPGGLVVDYLGLATELKAALATYTESGGTGRTALNQEEAVALMR  730
             H LMQAIARVNRVF+DKPGGL+VDY+G+A  LK AL  YTES + ++TA++ + AV LM 
Sbjct  665   HNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVELML  723

Query  731   EKYEICRGLFYGFDWSRWVTGTPAERLSLLPAAQEHILA-QENGKDRLLRAARELSQAFA  789
              KY++ ++++Y +D S+  +   +ER   ++ + + +++  E+ ++R++++  EL++AFA
Sbjct  724   LKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFA  783

Query  790   LAVPHEEALRIRddvaffqavqavLAK--RAPGQA---RPEEELEQAVRQIIARAVAPEG  844
             L   +  A  + D++AFF+AV+A L K  ++P ++   +   E+E  + Q+++++V  E+
Sbjct  784   LCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTED  843

Query  845   VVDIFAAAGLKRPDISILSDEFLSEVRGMPQKNLAVELLQKLLKGEIRARGQKNLVQARS  904
             V+D++ + GL +PD+SILSD+FL +V G+ QKN+AVELL++LLKG++++  + N   ++ 
Sbjct  844   VIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKR  903

Query  905   FAEMLERTIRRYQNRAIEAAQVIEELIALARDMREANARGEKLGLSEDELAFYDALEAND  964
             F+EML  +I +Y++R+IE+++VIEELI LA+D+++ + RG+ LGL+ DE+AFYDAL +++
Sbjct  904   FSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHE  963

Query  965   SAVKVLGDATLREIARELVQTVRNNVTLDWTLRENVRAQLRVLVKRTLRKYGYPPDKQEK  1024
             +A K + D  LR IA+EL +TV++N+++DW+ R++ +A++RV V+R L+KYGYPPD Q  
Sbjct  964   TAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKM  1023

Query  1025  ATQTVLEQAALLSAQ  1039
             A + V+EQA L++++
Sbjct  1024  AVEQVVEQAELMASN  1038

83) Sputcn32_2912 in NC_009438


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  816 bits (3090),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 481/1058 (46%), Positives = 766/1058 (73%), Gaps = 42/1058 (3%)

Query  2     TEDQLEQEALGWLGEIGYTHICGYDIAPDGANPERQDYRQPLLLERLRSAIARLNPQIPQ  61
              ED+LEQ  L WL  ++Y    G +I+  G  PER+  ++ +L ERL  A+ ++N++I  
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62    QAREDALASVMDLRIPSLLSANRHFHGVLVNGVPV-SYQKDGETRGDFVRLIDWENRPGT  120
             +  E A+  +   + P+LL  N  FH  L+NG+ +  Y+ +G++  ++V+++D E+ P  
Sbjct  66    RFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEH-PQN  124

Query  121   NEFLAVNQYTLKGPHHSRRPDIILFINGLPLVLFELKNPADEHADIWKAYDQIQTYKEQV  180
             N+FLAVNQ+T+   + ++RPDI+LFINGLP+V++ELKN+++E  ++  +Y+Q++TYK ++
Sbjct  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  181   PDVFQYNEILVISDGTEARMGSLSANAERYMQWRTIDGVNLDPLGAFGELETMVRGVFAP  240
             P++F +NE+LV SDG +++ GSL+AN +R+M WR+ DG + ++ ++++ L+ ++ G++ P
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDG-ETESSSSLASLDVLINGMLNP  243

Query  241   AYLLDYLRFFVLFEDDG--QLVKKIAGYHQFHAVRSAITQVVTASRPDVMGSNKGKGGVV  298
               LLD +R+FVLF+DDG  ++ K +A+YHQ+ AV  A+ + + AS     G   GKGGV+
Sbjct  244   KTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASS----GQGDGKGGVI  299

Query  299   WHTQGSGKSITMTCFAARVMREAAMENPTIVVITDRNDLDGQLFGVF-----SLAQDLLR  353
             WHTQGSGKS+TM  F++++++   ++NPT+V++TDRNDLD QL++ F       +++LLR
Sbjct  300   WHTQGSGKSLTMVFFSGKLIQ--MLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLR  357

Query  354   EQPVQVETRQDLRAKLANRPSGGIIFATIQKFAPGADEDVFPILSDRHNIVVVADEAHRT  413
             + P Q ETR++L++ L+   SGGI+F+T+QKF P  +E + + L++R N++V+ADEAHRT
Sbjct  358   QTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRT  416

Query  414   QYGFEAKLKVPELNAGVAEASAAYHSRYQVGFAQHLRDALPNATFVAFTGTPVSSEDRDT  473
             QYGF+AK    +   G+         +Y  G+A+ LRDALPNATFV+FTGTPV+S D++T
Sbjct  417   QYGFNAKYD--DKGEGI---------KY--GYAKYLRDALPNATFVGFTGTPVASTDKNT  463

Query  474   RAVFGDYIHIYDMQQAKEDGATVAIYYESRLAklklkeeelPHIddevdelaedeeeeQQ  533
             + VFG+YI++YDM QA  DG+TV IYYESR+  L+L +    ++D+  ++++ED+EE+ +
Sbjct  464   QMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSL--DLDEAYNDITEDQEEDVK  521

Query  534   SKLKSKWSALEKIVGAEPRIVKVAADLVAHFEARQQAQTGKAMVVAMSREICVHLYNAIC  593
              +LKSKWS +E + GA PR+  +A D++ HFE+RQQA  GK+M+V+MSR I V+LY+ I 
Sbjct  522   QRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEII  581

Query  594   ALRPDWHDDDPEKGAIKIVMTGSSSDKPLLRPHIHSKQVKKRLEKRFKDPKDPLQIVIVR  653
              L+P+WH DD +KG IK+VMTGSSSD   ++ HI +K+ +  LEKR KD +D LQ+VIVR
Sbjct  582   RLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVR  641

Query  654   DMWLTGFDAPCVHTLYVDKPMKGHNLMQAIARVNRVFRDKQGGLVVDYIGIANELKSALK  713
             DMWLTGFD P +HT+Y+DKPMKGHNLMQAIARVNRVF+DK GGL+VDY+GIA+ LK ALK
Sbjct  642   DMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALK  701

Query  714   EYTASNGRGRPTVDAAEAWSLLEEKLDILRSLLHGFDYSDFTKGGHK----LLAGAANHI  769
             EYT S+ +++ ++D+  A  L+  K D+++ +L  +DYS F           ++ + + +
Sbjct  702   EYTESD-QAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYV  760

Query  770   LGV-EDGKKRFADNALAMSKAFSLCCTLDEAKAVREEVAFLQAVKV----LLTKRDLSAK  824
             +G+ ED ++RF      ++KAF+LC T   A+ + +E+AF++AVK     LL     +  
Sbjct  761   IGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKT  820

Query  825   KRSDEEKDIAIRQIISQAVVSDEVVDIFDAVGLEKPNIGLLDDEFLAEVRNLPEKNLAVE  884
             +++  E +  I Q++SQ+VV+++V+D+++++GLE+P++++L D+FL +V  L +KN+AVE
Sbjct  821   RKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVE  880

Query  885   LLERLLEGEIKSRFASNVIQQKKFSELLSNVVKRYQNRSIETAQVMEELVDMAKKFREAA  944
             LL+RLL G++KS   +N    K+FSE+L+N +++Y++RSIET++V+EEL+++AK +++  
Sbjct  881   LLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQ  940

Query  945   KRGESLGLSDDEVKFYDalanneaavlelGDEILKKIAHELTDNLRANISVDWSQRESVR  1004
             +RG+ LGL+ DE+ FYDAL ++E+A   + D  L+ IAHELT  ++ N+SVDWS+R+S +
Sbjct  941   QRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAK  1000

Query  1005  AKLRIMVKRILRKYKYPPDQADGAVQLVLQQAEALGEQ  1042
             AK+R+ V+R+L+KY YPPD    AV+ V++QAE ++ +
Sbjct  1001  AKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

84) CFSAN002050_05875 in NC_021818


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  815 bits (3085),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 483/1056 (46%), Positives = 757/1056 (72%), Gaps = 39/1056 (3%)

Query  2     LSEDDLEQQCLQWFAEQGWEVLHGPDIAPDGDNPLRASFHDVFLRPVMLEQLQTINPHIP  61
             ++EDDLEQ  L+W+   + +   G +I+  G  P R S  DV L+  +   L+ IN++I 
Sbjct  5     FNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIH  64

Query  62    ISVLEEVIQRIAHAHSPDLVVSNKAFHHLLLNGVPVE-YKHEDKVIHDNALLMDFNHPDN  120
                +E  I+ ++   SP+L+ +N +FH+ L+NG+ +E Y +E++ I +   ++DF+HP+N
Sbjct  65    PRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQN  124

Query  121   NRFMVVNQVAIQGIKQVRRPDVIGYINGLPVAVIELKSPVDANADIWAAFNQLQTYKNEL  180
             N F+ VNQ ++      +RPD++ +INGLP+ VIELK++ +   ++  +++QL+TYK  +
Sbjct  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  181   SDLFICNEALVVSDGQNARVGSLTADEERFLPWKTVANENDKPQFDWQLKTVVQGFFNRA  240
             ++LF  NE LV SDG N++ GSLTA+ +RF+ W++   E + +     L  +++G +N  
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPK  244

Query  241   LLLDYIRYFVLFENDGKRLIKKI-AAYHQFHAVREAVAATIVASTGKHLPLHSNIQPGSK  299
              LLD IRYFVLF++DGK  I KI AAYHQ+ AV  AV  +++AS+G           G  
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSG----------QGDG  294

Query  300   KAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYATFCQ-----A  354
             K+GV+WHTQGSGKS++M  ++GKL+Q   +NNPT+V+VTDRNDLD QLY+TF +     +
Sbjct  295   KGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSG  352

Query  355   QDLLKQTPLQANDRDELRELLNARESGGIIFTTVQKFAPLDGEQSHPALNQRSNIVVISD  414
             ++LL+QTP QA+ R EL+ LL+  ESGGI+FTT+QKF P + E   +AL +R N++V++D
Sbjct  353   KGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMAD  411

Query  415   EAHRSQYGLSATLDRQTGVYKYGYAKHMRDALPNASFMGFTGTPIASEDKDTRAVFGDYV  474
             EAHR+QYG++A  D +    KYGYAK +RDALPNA+F+GFTGTP+AS DK+T+ VFG+Y+
Sbjct  412   EAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYI  471

Query  475   SIYDIQDAVDDGATVPIYYESRLAKLDLNHEELETLSDQVDELVEDEETGQQEKTKGDWS  534
              +YD+ +AV DG+TV IYYESR+  L+L +  L+ L +  +++ ED+E + +++ K+ WS
Sbjct  472   DVYDMTQAVADGSTVKIYYESRVIPLNLPQS-LD-LDEAYNDITEDQEEDVKQRLKSKWS  529

Query  535   RLEKLVGSEPRIQQVAADLVQHFETRNTAMNGKAMIVAMSREICVKLYDAIVVIRPEWHS  594
             R+E L G+ PR++ +A D++QHFETR+ AM+GK+MIV+MSR I V LYD I+ ++PEWHS
Sbjct  530   RIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHS  589

Query  595   EDVEQGAIKVIMTGSASDKDHLQSHIYNKQTKKRLEARFKDLNDPLKLVIVRDMWLTGFD  654
             +D ++G IKV+MTGS+SD   +Q HI  K+ +  LE R KD+ND L+LVIVRDMWLTGFD
Sbjct  590   DDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFD  649

Query  655   APCCHTMYIDKPMRGHNLMQAIARVNRVFRDKPGGLVVDYIGIANELKQALKTYTDSKGK  714
              P  HTMYIDKPM+GHNLMQAIARVNRVF+DKPGGL+VDY+GIA+ LK+ALK YT+S ++
Sbjct  650   VPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQ  708

Query  715   GQTTVDAREAFAILLEKMDVIHGMFARSAGKPGFDYTGFSRDPLA--F--LRDAVNYILG  770
             +QT++D+  A  ++L K DVI++M+        +DY+ F+ +  +  +  + ++++Y++G
Sbjct  709   AQTAIDTDKAVELMLLKYDVIQDMLY------NLDYSKFNSEKKSERYYTISNTMDYVIG  762

Query  771   L-DDGKKRYLDVSLAMSKAWSLCNTLDEAEPLQEEFAFLSAIRVGLIKL-----DPKAKF  824
             L +D ++R++     ++KA +LC T   A+ L++E+AF+ A++ GL+KL     + K++ 
Sbjct  763   LGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRK  822

Query  825   SQSEKNSLLSKILDNAVVATGVEDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELL  884
             + +E ++ +++++ ++VV+ +V DV+   GL++P++++LSD+FL +V  + Q+N+AVELL
Sbjct  823   TPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELL  882

Query  885   EKLLNDGIHARSGNNVVQQKKYSDRLKAVLLKYNNRAIETAQVIEELIQMAKAFQDAMAR  944
             ++LL++ + +    N    K++S+ L   + KYN+R+IET++VIEELIQ+AK +++   R
Sbjct  883   NRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQR  942

Query  945   DDALGLNPDEIAFYDALAENESAVRELGDDTLRKLAIEVTRQLRKSTTVDWQVRDSVRAR  1004
             ++ LGLN+DEIAFYDAL  +E+A + + D  LR +A E+T+ ++ + +VDW  RDS +A+
Sbjct  943   GNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAK  1002

Query  1005  LRVLVRQTLRKYKYPPDKTAGAVELILKQAEVISNH  1040
             +RV VR+ L+KY YPPD    AVE ++ QAE+++++
Sbjct  1003  MRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

85) R2APBS1_3887 in NC_020541


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  815 bits (3084),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 480/1074 (45%), Positives = 766/1074 (72%), Gaps = 59/1074 (5%)

Query  7     EDHLEQAALQWLAGLGWEVAHGPDISPPDAHTPGSERDSYRQVVLEHRLRDAIRRLNPRI  66
             ED+LEQ  L+WL +L+ +   G +IS  +    ++ER S ++VVL++RL  A+R++N+ I
Sbjct  7     EDDLEQVVLEWLESLSYDYKKGNEISMTGL---APERKSDKDVVLHERLEKALRKINSDI  63

Query  67    PATAQDEALRIVLNPNIPGPLQANRQLHRWLTEGVPVQ-FQQGNETrgdlvrlvdfddvr  125
              +   + A++ +   + P  L+ N  +H  L +G+ ++ +++  ++  ++V++VDF++ +
Sbjct  64    HPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQ  123

Query  126   gNDWVAVNQFSIQGPKRTRRPDLLLFLNGLPIVLLELKNPGDENADIWSAFNQVQAYRED  185
              ND +AVNQF++     T+RPD++LF+NGLPIV++ELKN+ +E  ++  +++Q+++Y+  
Sbjct  124   NNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  186   IPDLFIYNTLVVISDGIRARMGSLSAERERYMAWRTIDGAQTDPLGEMRELETLVHGAFD  245
             IP+LF +N ++V SDGI ++ GSL+A+ +R+M+WR+ DG +T++ + +  L+ L++G ++
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDG-ETESSSSLASLDVLINGMLN  242

Query  246   RALLLAYLRNFILFEDDGA--LVKKVAGYHQFHAVRAVVESVLAASKPGGSRKGGVVWHT  303
                LL  +R F+LF+DDG   + K +A+YHQ+ AV   V+  L AS   G  KGGV+WHT
Sbjct  243   PKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHT  302

Query  304   QGAGKSIEMTCLAGTLMQHPAMGNPTIVVVTDRNDLDNQLFGVFA-----GVADLLRETP  358
             QG+GKS+ M  ++G L+Q   + NPT+V+VTDRNDLDNQL++ F      +  +LLR+TP
Sbjct  303   QGSGKSLTMVFFSGKLIQ--MLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  359   VQADTRPRLRELLGNRPSGGIIFTTIQKFTPGEDEDVFPVLSERQNIVVICDEAHRTQYG  418
              QA+TR  L+ LL+   SGGI+FTT+QKF P ++E + + L+ER+N++V+ DEAHRTQYG
Sbjct  361   KQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYG  419

Query  419   FEAKLTGDLakakpakmaadaagsvamaalmSHEASASYASSVRYGYAQHLRDALPNATF  478
             F+AK  +                                + +++YGYA+ LRDALPNATF
Sbjct  420   FNAKYDDK-------------------------------GEGIKYGYAKYLRDALPNATF  448

Query  479   VAFTGTPVSLTDRDTRAVFGDYVHVYDIEQAVKDGATVPIYYESRLAKLELSDGDIDALD  538
             V+FTGTPV+ TD++T+ VFG+Y++VYD+ QAV DG+TV IYYESR+  L+L+++ +D LD
Sbjct  449   VGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQS-LD-LD  506

Query  539   EEVDELNEGAIDDPSHAARIRRWAALEKVVGAAPRIQKVASDIVEHFENRLAAMDGKAMI  598
             E  +++ E+  +D  +  +  +W+ +E + GA PR++ +A DI++HFE R  AM GK+MI
Sbjct  507   EAYNDITEDQEEDVKQRLK-SKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMI  565

Query  599   VAMSREICVHLYDAIVALRPEWHAADPEKGVIKIVMTGSAADKPMLKPHVYPKETRKRLE  658
             V+MSR I V+LYD I+ L+PEWH+ D +KGVIK+VMTGS++D   ++ H+ PK  R  LE
Sbjct  566   VTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLE  625

Query  659   RRYKDSADPFKLVIVRDMWLTGFDAPCLHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGL  718
             +R KD  D ++LVIVRDMWLTGFD P +HTMYIDKPM+GHNLMQAIARVNRVFKDKPGGL
Sbjct  626   KRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGL  685

Query  719   VVDYIGIANELKQALADYTQAKGRGSPTIDAEEALEVLVERMELLHGMLHGYDYAAF---  775
             +VDY+GIA+ LK+AL +YT++ +++  +ID++ A+E+++ + +++++ML   DY+ F   
Sbjct  686   IVDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSE  744

Query  776   -RAQAWALLPGAANHVLGL-DDGKQRFADQVLAATKAFALCCTLDAALAYRDELAFLQAI  833
              +++    ++ + + V+GL +D +QRF   V    KAFALC T  +A    DE+AF++A+
Sbjct  745   KKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAV  804

Query  834   KSAITK--HATTDKKL--SDEQKEHALRQIISRAVVSDQVIDIFAAAGLKRPDIGVLSEE  889
             K+++ K  ++  + K   +  + E  + Q++S++VV+++VID++ + GL +PD+++LS++
Sbjct  805   KAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDD  864

Query  890   FLQDMRHMKERNLAVELLDRLLKGEIKSRFKTNVVQSAKFSELLQASLTRYRNRAIETAQ  949
             FL+D+  +K++N+AVELL+RLLKG++KS  KTN   S +FSE+L  S+ +Y +R+IET++
Sbjct  865   FLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSK  924

Query  950   VIEELIAMAKKFQQAAEHGDALGLNRDEVAFYDALANNESAVRELGDETLRKIAVELTQK  1009
             VIEELI +AK ++Q  ++G+ LGLN DE+AFYDAL ++E+A + + D  LR IA ELT+ 
Sbjct  925   VIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKT  984

Query  1010  LRNSVTVDWAVRDSVRAKLRVMVKTLLRRYKYPPDKQDEAVEIVLRQAETLTNT  1063
             ++++++VDW+ RDS +AK+RV V+ LL++Y YPPD Q  AVE V+ QAE +++ 
Sbjct  985   VKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

86) hsdR in NC_008384


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  814 bits (3081),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 485/1038 (47%), Positives = 758/1038 (74%), Gaps = 32/1038 (3%)

Query  29    FQALGYLYQPSQVISPDGSAPARLAYGDVLLSDMLAAAVERLNPDIPADACEQAIRQLSI  88
             +++L+Y Y+ ++ IS  G AP R +  DV+L + L  A+ ++N+DI +   E+AI++L++
Sbjct  18    LESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHPRFIEKAIHELTL  77

Query  89    TETPSLVEENRRIHRLITEGVDVE-FGIGDGEVKGDKVWLIDFEHPEKNEFLVTNQFTLA  147
               +P+L+E+N  +H  + +G+++E ++ ++G+   + V ++DFEHP++N+FL  NQFT+ 
Sbjct  78    EKSPNLLENNLTFHENLINGIEIEDYD-DEGQSIVEIVKIVDFEHPQNNDFLAVNQFTVV  136

Query  148   EGKHTRRPDVMVFVNGLPLGIIELKNAASKTATIDQAYQQLQTYKEQIPSLFRTNAVLVA  207
             +G  T+RPD+++F+NGLP+ +IELKN+++ T  ++++Y+QL+TYK +IP LF  N VLV+
Sbjct  137   NGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVT  196

Query  208   SDGMLARIGSLTADEERFMPWRSVTGADGDFTPHGPYEMDTLLRGVFNKERFLALIRDFT  267
             SDG+ ++ GSLTA+ +RFM WRS  G     ++ ++  +D L+ G++N   +L LIR F 
Sbjct  197   SDGINTKAGSLTANYDRFMTWRSKDGETESSSSLAS--LDVLINGMLNPKTLLDLIRYFV  254

Query  268   VFGDRGEGPF-KIIAGYHQFHGARKAITSAIEAVKPEGDRKIGVIWHTQGSGKSLLMAFL  326
             +F D G G + KI+A+YHQ+ +  KA+  A+ A   +GD K GVIWHTQGSGKSL M F+
Sbjct  255   LFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQGSGKSLTMVFF  314

Query  327   GGLIVRSRELENPTLIVLTDRNDLDDQLFGTFSLCKD-----LIRQTPEQADSRDDLRKL  381
             +G +++   L+NPTL+++TDRNDLD+QL++TF   K+     L+RQTP QA++R +L+ L
Sbjct  315   SGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSL  372

Query  382   LNRASGGVIFTTVQKFTPEKGEEVFPVLTERRNVIVMADEAHRSQYGFDAKLNRETGERR  441
             L+  SGG++FTT+QKF PE+ E + + LTER+NVIVMADEAHR+QYGF+AK +      +
Sbjct  373   LSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFNAKYDDKGEGIK  432

Query  442   YGYAHHIRQALPNASFMGFTGTPIEATDVNTPAIFGEYIDIYDISRAVEDGATVPIYYES  501
             YGYA  +R+ALPNA+F+GFTGTP+ +TD NT  +FG+YID+YD+++AV DG+TV IYYES
Sbjct  433   YGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYES  492

Query  502   RLARIELNEDEKPKIDAAIEAMLEDEALTEQEKQKAQWTTVERLVGAEKRLKQIAADLVA  561
             R+  ++L +     +D A + + ED+    +++ K++W+ +E L GA  R+  +A D++ 
Sbjct  493   RVIPLNLPQS--LDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQ  550

Query  562   HLQRRIEGLPGKAMVVCMSRRICVDLYEEIVALRPEWHSDDDDKGAIKIVMTGSASDPLD  621
             H++ R +++ GK+M+V MSRRI VDLY+EI+ L+PEWHSDDDDKG IK+VMTGS+SDP  
Sbjct  551   HFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTS  610

Query  622   WQPHIGNkrrrddlakrarkVEDPLKLVIVRDMWLTGFDAPCMHTMYVDKPMRGHGLMQA  681
              Q HIG K+RR  L KR + V+D L+LVIVRDMWLTGFD P MHTMY+DKPM+GH LMQA
Sbjct  611   FQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQA  670

Query  682   IARVNRVFKEKPGGLVVDYIGIATNLKKALAQYSQSDRDKTGIDEEQAVALLLEKYEIVR  741
             IARVNRVFK+KPGGL+VDY+GIA +LK AL +Y++SD+ +T+ID ++AV L+L KY++++
Sbjct  671   IARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVELMLLKYDVIQ  730

Query  742   GMFAGHDYSLGISGKPFERLRALADGIDWILKWQQAEAAKVDSQEAKKRAHRRYQDAVle  801
             +M+   DYS   S K  ER  ++++ +D ++   + E             ++R+  +V E
Sbjct  731   DMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDE-------------RQRFIKTVTE  777

Query  802   lskayalasasddaaeIRDEVGFFQAVRAALVKTTATGKISDRAKSLA-----VEQLLNQ  856
             L+KA+AL ++   A E+ DE++FF+AV+A+LVK     K +   K+ A     ++QL++Q
Sbjct  778   LGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQ  837

Query  857   AVANAEIVDILKAAGLDSPDISVLSDQFLADIQKMekknlalealkkllnGEIKSRSKSN  916
             +V   +++D+ ++ GL+ PD+S+LSD+FL D++ + +KN+A+E L++LL+G++KS  K+N
Sbjct  838   SVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTN  897

Query  917   VVEAKTFSRRLEEAVARYHANAISTVEMIQELIALAKEMQAASARGEEMGLTPEEIAFYD  976
                +K FS  L +++ +Y++ +I T  +I+ELI LAK+++    RG+E+GL ++EIAFYD
Sbjct  898   ATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYD  957

Query  977   ALAGNDSAVEAMGSEQLRVIAHELVEQMRGSVTVDWQHKASARAKMRILVKRILKRFGYP  1036
             AL ++++A  AM   +LR IAHEL   ++ +++VDW  + SA+AKMR+ V+R+LK++GYP
Sbjct  958   ALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYP  1017

Query  1037  PDLEQEAVQTVLAQAELL  1054
             PDL++ AV+ V+ QAEL+
Sbjct  1018  PDLQKMAVEQVVEQAELM  1035

87) Bcep1808_0004 in NC_009256


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  812 bits (3075),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 485/1050 (47%), Positives = 748/1050 (72%), Gaps = 37/1050 (3%)

Query  4     ISEDAVEQAMLEWLANLGWQTAHGPDVSPPDAKTPGTERNSYRDVALRHRLAAAIAKLNP  63
             ++ED +EQ +LEWL +L+ +   G ++S  +    + ER+S +DV L++RL  A+ K+N+
Sbjct  5     FNEDDLEQVVLEWLESLSYDYKKGNEISMTGL---APERKSDKDVVLHERLEKALRKINS  61

Query  64    QIPAVarddalrralNPNTPGHVNANRQLYRWLVDGVPVE-FQKDGETRGDRVRLVDFTD  122
             +I +   + A++     ++P  ++ N  +   L++G+ +E ++ +G++  + V++VDF +
Sbjct  62    DIHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEH  121

Query  123   IAANDWLAVNQLAFQGPKQLRRPDVVLYLNGLPIVVVELKNPGDENADIWAAWNQLQTYH  182
                ND LAVNQ++       +RPD+VL++NGLPIVV+ELKN+ +E  ++  + +QL+TY 
Sbjct  122   PQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYK  181

Query  183   QDIPDLFNANVLEVISDGTTARMGSLTSNKERFLAWCTIDGNEIDPLGAMRELETLTRGL  242
               IP+LF  N + V SDG  ++ GSLT+N +RF++W + DG E ++ +++  L+ L  G+
Sbjct  182   MRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDG-ETESSSSLASLDVLINGM  240

Query  243   FRRDYLLEYLRHFILFEDDG--QLIKKVAAYHQFHAVRAVVQSVLQASAPGGSRKGGVVW  300
             +    LL+ +R F+LF+DDG  ++ K +AAYHQ+ AV   V+  L AS+  G  KGGV+W
Sbjct  241   LNPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIW  300

Query  301   HTQGAGKSIEMTCLAGALMAHEDMGNPTLVVVTDRNDLDNQLFGVFA-----GAKELLRE  355
             HTQG+GKS+ M  ++G L+  + + NPTLV+VTDRNDLDNQL++ F      ++K LLR+
Sbjct  301   HTQGSGKSLTMVFFSGKLI--QMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQ  358

Query  356   TPVQADTRPELRRLLANRPSGGIIFTTIQKFTPGTDEDTFPVLSSRRNIVVICDEAHRSQ  415
             TP QA+TR EL+ LL+   SGGI+FTT+QKF P  +E   + L+ R+N++V+ DEAHR+Q
Sbjct  359   TPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQ  417

Query  416   YGFDARLPITDCKGESTAVRYGYAQYLRDALPEATFVAFTGTPVSLDDRDTRAVFGDYVH  475
             YGF+A+       + + +++YGYA+YLRDALP+ATFV+FTGTPV+  D++T+ VFG+Y++
Sbjct  418   YGFNAK-----YDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYID  472

Query  476   IYDIEQAVKDGATVPIYYESRLASLELKEGDASILddevdeltedeendeAKVATLR-RW  534
             +YD+ QAV DG+TV IYYESR+ +L+L ++    LD +       E+++E     L+ +W
Sbjct  473   VYDMTQAVADGSTVKIYYESRVIPLNLPQS----LDLDEAYNDITEDQEEDVKQRLKSKW  528

Query  535   AALEKIVGAPPRIQKVAADIVSHFENRQAVMDGKAMIVAMSRDICVHLYNAITQLRPEWH  594
             + +E + GA PR++ +A DI+ HFE RQ  M GK+MIV+MSR I V+LY+ I +L+PEWH
Sbjct  529   SRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWH  588

Query  595   SDDSTQGAIKIVMTGSASDKAMLKPHIYSKKVRDDLEKRFKDPSDPFKLVIVRDMWLTGF  654
             SDD  +G IK+VMTGS+SD + ++ HI +KK R  LEKR KD +D ++LVIVRDMWLTGF
Sbjct  589   SDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGF  648

Query  655   DAPCMHTMYIDKPMRGHSLMQAIARVNRVFKDKPGGLVVDYIGIANELKAALATYTQARG  714
             D P MHTMYIDKPM+GH+LMQAIARVNRVFKDKPGGL+VDY+GIA+ LK AL  YT++ +
Sbjct  649   DVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-D  707

Query  715   RGRPTIDAREALAVLAEKIDVLHNMLHGVDYAAF----RSQAWQLLPAVANHVLG-QDDG  769
             +++ +ID+  A+ ++  K DV+++ML  +DY+ F    +S+    ++   + V+G  +D 
Sbjct  708   QAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDE  767

Query  770   KKRFADTVLAASKAFALCCTLAEALAYRDELAFLQAVKAALIK-----HDGADKALTDEQ  824
             ++RF  TV   +KAFALC T + A    DE+AF++AVKA+L+K      +G  +  T  +
Sbjct  768   RQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRK-TPAE  826

Query  825   KEHALRQIISRAVVSDQVIDVFSAAGLKRPDISVLSDGFLEDVRHMQQRNLAVELLERLL  884
              E  + Q++S++VV+++VIDV+ + GL +PD+S+LSD+FL DV  ++Q+N+AVELL+RLL
Sbjct  827   VEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLL  886

Query  885   RDQIKSRFKTNVVQSAKFSELLQQSLTRYRNRAVETAQVIEELIAMAKKFQVEAQRGMEL  944
             ++Q+KS  KTN   S +FSE+L +S+ +Y +R++ET++VIEELI +AK ++ E QRG EL
Sbjct  887   KGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNEL  946

Query  945   GLSPDEMAFYDALATNEAAVRELGDDTLKKIAVELVVKLRGSVTVDWSKRETVRARLRVM  1004
             GL++DE+AFYDAL ++E+A + + D  L+ IA EL   ++ +++VDWSKR++ +A++RV 
Sbjct  947   GLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVA  1006

Query  1005  VKTLLKRYKYPPDRQEEATDTVLSQAESLS  1034
             V+ LLK+Y YPPD Q  A + V+ QAE ++
Sbjct  1007  VRRLLKKYGYPPDLQKMAVEQVVEQAELMA  1036

88) Mhun_2781 in NC_007796


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  811 bits (3071),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 478/1032 (47%), Positives = 744/1032 (73%), Gaps = 20/1032 (1%)

Query  8     ESDVEETALDIFRDLGYEVLYGYEVAPGERDQIRNSFEEYLLGSRLEDAIFRLNKTLPCD  67
             E D+E+  L+ +  L+Y+   G E++       R+S  + +L  RLE A+ ++N  +   
Sbjct  7     EDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHPR  66

Query  68    AHEAAQKILTNPGHTTLIQNNKTVHEMLSGGITVEYRRKDGSVGGDQVRLIDFEHPENNE  127
               E A   LT      L++NN T HE L  GI +E    +G    + V+++DFEHP+NN+
Sbjct  67    FIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNND  126

Query  128   FLVVNQFTIQEGKNHRRPDIVLFINGIPVIIFELKNPTDERATLTIAHNQLQTYMQEIPS  187
             FL VNQFT+ +G   +RPDIVLFING+P++++ELKN+T+E   +  + +QL+TY   IP 
Sbjct  127   FLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQ  186

Query  188   FFSYNTMAIISDGIQTRIGTLSASLERFSRWRTIDGAQEAPNHIPEIEVLIRGVCNKKRL  247
             +F++N + + SDGI+T+ G+L+A+ +RF  WR+ DG  E+++ ++ ++VLI G+ N K L
Sbjct  187   LFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPKTL  246

Query  248   LDLIRFFIVFEEDERGNTIKKLAGYHQYHAVNLAVRSTETAISDVGDRRCGVVWHTQGSG  307
             LDLIR+F++F++D +G+  K LA+YHQY AVN AV  +  A S+ GD + GV+WHTQGSG
Sbjct  247   LDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQGSG  306

Query  308   KSLTMVFYSGKIIQTPSLQNPTILVITDRNDLDDQLFGTFSRC-----RKLLRQTPIQAE  362
             KSLTMVF+SGK+IQ   L+NPT++++TDRNDLD+QL++TF +      + LLRQTP QAE
Sbjct  307   KSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAE  364

Query  363   GRDHLKTLLSVASGGVVFTTIQKFFPEDENKETYPLLSDRKNIIVIADEAHRSQYGMHGK  422
              R +LK+LLSV SGG+VFTT+QKF PE+++    + L++RKN+IV+ADEAHR+QYG ++K
Sbjct  365   TRKELKSLLSVESGGIVFTTMQKFEPEQNETIM-AALTERKNVIVMADEAHRTQYGFNAK  423

Query  423   VSKKGE-ISYGFAKYIRDALPNASFIGFTGTPIDLQDKVTRNVFGEYISVYDIQQAIKDK  481
                KGE I YG+AKY+RDALPNA+F+GFTGTP+   DK T+ VFG+YI VYD+ QA+ D 
Sbjct  424   YDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADG  483

Query  482   ATVPIYYESRIVDIRMNEQIKPLIDQefeevteneevirkeKLRTKWAALEAIVGDEKRI  541
             +TV IYYESR++ + + + +   +D+ ++++TE++E   K++L++KW+ +EA+ G   R+
Sbjct  484   STVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRV  541

Query  542   NEVADDLIRHFKQRSDAIEGKAMIVCMSRRICVELYKALVERQPDWDSHSDNEGFLKVIM  601
             + +A D+I+HF  R +A+ GK+MIV MSRRI V+LY  ++  +P+W+S+ D+ G +KV+M
Sbjct  542   EALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVM  601

Query  602   TGSAGDEKDFQKHIRPKSGRELLAKRFKDPEDPFKIAIVRDMWLTGFDVPCLHTMYIDKP  661
             TGS++D   FQ+HI PK  R +L KR KD +D +++ IVRDMWLTGFDVP +HTMYIDKP
Sbjct  602   TGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKP  661

Query  662   MKGHTLMQAIARVNRVWRDKPGGLIVDYIGLAEELKKALVTYTESKGKGDPVFDQERIVD  721
             MKGH LMQAIARVNRV +DKPGGLIVDY+G+AE LK AL  YTES ++++  +D ++ V+
Sbjct  662   MKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVE  720

Query  722   KMMEKYEVCCHLFHGFDWSGWRGAPAATRLSILQAGFNYV--LDDPERKSDFMQHVLELS  779
              M+ KY+V  +++  +D S   +   + R   +    +YV  L++ ER+  F++ V EL+
Sbjct  721   LMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQR-FIKTVTELG  779

Query  780   QAFALALPHEKAIEIREDVAYFQAVRAQIIK----TSEGAG-KSEYELNLAVKQIVSKSI  834
             +AFAL   +  A E+ +++A+F+AV+A ++K      EG   K+  E++  ++Q+VS+S+
Sbjct  780   KAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSV  839

Query  835   VPLGIVDIFKEMGKDVGDISVLSEEFLNDLLKYKNQNVAIAAMTRLLNDQIRARTRKNTT  894
             V  +++D+++ +G +  D+S+LS++FL+D+   K++NVA+  + RLL++Q+++  + N+T
Sbjct  840   VTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNAT  899

Query  895   EARKFSEMLEQTINKYNNRKVTTQEILKELAQIAREIREAQQRGEDLGLTEAELAFYDAL  954
              +++FSEML ++INKYN+R + T  ++ EL Q+A++I++ QQRG++LGL   E+AFYDAL
Sbjct  900   VSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDAL  959

Query  955   GVNDSAVVILGDDILKKIAQDLVKTIRENVTIDWSSRESVRAKMRVAIKRILRVNGYPPD  1014
               +++A   + D  L+ IA++L KT++EN+++DWS R+S +AKMRVA++R+L+  GYPPD
Sbjct  960   VSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPD  1019

Query  1015  KQENAIQTVMQP  1026
              Q  A++ V++ 
Sbjct  1020  LQKMAVEQVVEQ  1031

89) Zmob_1744 in NC_017180


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  811 bits (3070),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 487/1063 (46%), Positives = 761/1063 (72%), Gaps = 44/1063 (4%)

Query  1     MSF-LSENEIE----DWACDILRECGYTIVWGPDIAPGGKKPERASLSDVILEKRLRAAI  55
             M+F ++E+++E    +W    L   +Y    G +I+  G  PER S  DV+L+ RL  A+
Sbjct  1     MNFQFNEDDLEQVVLEW----LESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKAL  56

Query  56    DRLNPHLLQASRDETLLALIREDTPDHVDENRRLHDYLVNGVPVDVVREDGTQSGDRVRL  115
              ++N+++     + ++  L  E +P+ +++N  +H+ L+NG+ ++   ++G    + V++
Sbjct  57    RKINSDIHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKI  116

Query  116   LDFDTPENNDFLVVRQFVLEKDEANRRPDLVLFINGMPLGVVELKSPSSENATLDSAWNQ  175
             +DF+ P+NNDFL V QF + +++  +RPD+VLFING+P+ V+ELK++++E   ++ + +Q
Sbjct  117   VDFEHPQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQ  176

Query  176   FQTYRSLISSLFRFNEALMISDGTQARVGSLTAGRDRFMPWRTINGEDLIAKNHEEMETV  235
             ++TY+  I+ LF FNE L+ SDG +++ GSLTA  DRFM WR+ +GE   + +   ++ +
Sbjct  177   LETYKMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVL  236

Query  236   LRGVFTPHWFLGLIRDFVLFGEKNGSPI-KILAGYHQFHACLKAVTQTVRASAPDGNRKV  294
             + G++ P  +L+LIR FVLF +   + I KILA+YHQ+ A  KAV +++ AS+ +G+ K 
Sbjct  237   INGMLNPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKG  296

Query  295   GVVWHTQGSGKSLLMTFYAGVIARHPEMENPTIIVLTDRNDLDDQLFATF-----SGAQA  349
             GV+WHTQGSGKSL M F++G + +   ++NPT++++TDRNDLD+QL++TF      ++++
Sbjct  297   GVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKG  354

Query  350   LLRQIPEQADSRDDLQKLLRRTSGGVIFTTLQKFQPEDGETSLPMLTDRRNVVVMADEAH  409
             LLRQ P QA++R +L+ LL   SGG++FTT+QKF+PE+ ET ++ LT+R+NV+VMADEAH
Sbjct  355   LLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAH  414

Query  410   RSQYGLEAKFNPKTGKMTYGFAKYLRDALPNASFIGFTGTPIENADVNTRGIFGdyidiy  469
             R+QYG++AK++ K   + YG+AKYLRDALPNA+F+GFTGTP+ ++D NT+ +FG+YID+Y
Sbjct  415   RTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVY  474

Query  470   diAQAVEDGATVPIYYESRLVRIeldedlkdelddeladIVEGLCENEEHKLSQKYSRVE  529
             D++QAV DG+TV IYYESR++ ++L + L  +   +   I E+  E+  ++L  K SR+E
Sbjct  475   DMTQAVADGSTVKIYYESRVIPLNLPQSLDLDEAYND--ITEDQEEDVKQRLKSKWSRIE  532

Query  530   ALVGSEPRLRRIAVDLVTHFENRLNALEGKGMIVGMSRAICVALYNEIIRLRPAWHSDDD  589
             AL G+ PR+  +A D++ HFE R +A+ GKGMIV MSR I V LY+EIIRL+P WHSDDD
Sbjct  533   ALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDD  592

Query  590   NEGAIKVVMTGSSSDPAGLQPHIGKKSKARRELLAKRMKDNNDPLRLVIVRDMWLTGFDV  649
             + G IKVVMTGSSSDP+++Q HIG  +K RR +L KRMKD ND L+LVIVRDMWLTGFDV
Sbjct  593   DKGVIKVVMTGSSSDPTSFQRHIG--PKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDV  650

Query  650   PSMHTMYVDKPMRGHGLMQAIARVNRVFKGKPGGLVVDYIGLAQNLKAALGEYSAGDREQ  709
             PSMHTMY+DKPM+GH LMQAIARVNRVFK+KPGGL+VDY+G+A++LK AL EY+ +D+ Q
Sbjct  651   PSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQ  710

Query  710   VGIDEGKAIRALQERYEVVRAMFNPGQAAGFDYRPALQDEATAKTKLSIMAGALDHILGQ  769
              +ID +KA+  +  +Y+V++ M+   + + F+             +   ++ ++D ++G 
Sbjct  711   TAIDTDKAVELMLLKYDVIQDMLYNLDYSKFN-------SEKKSERYYTISNTMDYVIGL  763

Query  770   QQRAMVTAKSAEERKAIQKRYPDGVKalsvafalasasdeaarlrdEIGFFEAVRAALVK  829
                      + +ER+    R+   V  L+ AFAL ++   A  L DEI+FF AV+A+LVK
Sbjct  764   ---------GEDERQ----RFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVK  810

Query  830   ---SASNGSDGRSAQELELAIKQLVSKAVISTDIIDIMEVAGIGKPDISILSDTFLQEVR  886
                ++ +G   +++ E+E  I+QLVS++V++ D+ID+ +  G+ +PD+SILSD FL++V 
Sbjct  811   LLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVE  870

Query  887   EMPQRNLAIDALKKLLEGQIRSRTRTNITEAEAFSQRLEQAVARYHANALTSAQILDELI  946
              + Q+N+A++ L++LL GQ++S  +TN T +  FS+ L +++ +Y++ ++ ++++++ELI
Sbjct  871   GLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELI  930

Query  947   RMAHDMVSACDRGEELGLTQEEIAFYDALAQNESAKEAMGDPGLRAIATALVKTIRVNAT  1006
             ++A D+    +RG+ELGL  +EIAFYDAL  +E+AK AM D  LRAIA  L KT++ N +
Sbjct  931   QLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMS  990

Query  1007  VDWTVMAQARAKMRTSVKRLLRRYGYPPDMQDEAVQHILRQAE  1049
             VDW+    A+AKMR +V+RLL++YGYPPD+Q  AV++++ QAE
Sbjct  991   VDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAE  1033

90) hsdR1 in NC_014145


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  811 bits (3071),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 484/1077 (45%), Positives = 757/1077 (71%), Gaps = 62/1077 (5%)

Query  7     EDHLEQATLQWLSALGWQTAHGPDISPPDARTAGTERDTYRQVCLPHRLAATIQRLNPNI  66
             ED+LEQ  L+WL +L+ +   G +IS  +    + ER + ++V L +RL  +++++N++I
Sbjct  7     EDDLEQVVLEWLESLSYDYKKGNEISMTGL---APERKSDKDVVLHERLEKALRKINSDI  63

Query  67    PTSARDAALRLVLNPNTPGLVAANRQFHRWLVEGVPVE-YQRDGETRGDRVRLIDFSDVG  125
                  + A++ +   ++P L+  N  FH  L++G+ +E Y+ +G++  + V+++DF +  
Sbjct  64    HPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQ  123

Query  126   RNDWLAVNQFTVQGPKHTRRPDLVLFLNGLPLVVLELKNPGDENADIWGAFNQLQAYKDD  185
              ND LAVNQFTV     T+RPD+VLF+NGLP+VV+ELKN+ +E  ++ ++++QL++YK  
Sbjct  124   NNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  186   IPDLFIDNELLVITDGISARMGSLTADRERFMAWRTIDGHTTDPLGSMRELETLVQGAFD  245
             IP+LF  NE+LV +DGI+++ GSLTA+ +RFM+WR+ DG+T  + +S+  L+ L++G ++
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESS-SSLASLDVLINGMLN  242

Query  246   RQTLLDYLQHFILFEDDG-GLVKKV-AGYHQFHAVRAVVDSVLKASAPGGSRKGGVVWHT  303
              +TLLD ++ F+LF+DDG G + K+ A+YHQ+ AV   VD  L AS+  G  KGGV+WHT
Sbjct  243   PKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHT  302

Query  304   QGAGKSIEMTCLAGMLIGHPELQNPTVLMVTDRNDLDNQLFGVFA-----GATELLHETP  358
             QG+GKS+ M  ++G LI    L+NPT+++VTDRNDLDNQL++ F      ++  LL++TP
Sbjct  303   QGSGKSLTMVFFSGKLI--QMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  359   VQAATRPKLRELLGNRPSGGIVFTTIQKFAPGEDEDSFPVLSERSNIIVICDEAHRSQYG  418
              QA TR  L+ LL+   SGGIVFTT+QKF P ++E   + L+ER N+IV+ DEAHR+QYG
Sbjct  361   KQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYG  419

Query  419   FAAKLPGQDDATRRYRQTAAAPLSAQDAGAIGATTALVTAAPASSVRYGYAQYLRDALPN  478
             F AK  +++++                                  ++YGYA+YLRDALPN
Sbjct  420   FNAKYDDKGEG----------------------------------IKYGYAKYLRDALPN  445

Query  479   ATFVAFTGTPVSLEDRDTRAVFGDYVHIYDVEQAVKDGATVPIYYESRLAKLELAEEDTT  538
             ATFV+FTGTPV+  D++T+ VFG+Y+++YD+ QAV DG+TV IYYESR+  L+L++   +
Sbjct  446   ATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQ---S  502

Query  539   WldddvdqlteddeddASKTSKLRRWAALEKLVGAPPRIQKVAADIVEHFENRLAALDGK  598
                D+  +   +D+++  K     +W+ +E L GA PR++ +A DI++HFE R  A+ GK
Sbjct  503   LDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGK  562

Query  599   AMVVGMSREICVHLYDALVALRPEWHDPDPDKGAIKIIMTGSASDKPMLKPHIYTKEVKK  658
             +M+V MSR I V+LYD ++ L+PEWH  D DKG IK++MTGS+SD   ++ HI  K  + 
Sbjct  563   GMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRS  622

Query  659   RLERRYKDPADPFKLVIVRDMWLTGFDAPCLHTMYIDKPMRGHNLMQAIARVNRVFKDKP  718
              LE+R KD  D ++LVIVRDMWLTGFD P +HTMYIDKPM+GHNLMQAIARVNRVFKDKP
Sbjct  623   VLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKP  682

Query  719   GGLVVDYIGIANELKAALKDYTLAHGKGRPTIDTHEALRLLLEKMEVLHGILHGCDYADF  778
             GGL+VDY+GIA+ LK ALK+YT   ++++ +IDT+ A+ L+L K +V++++L   DY+ F
Sbjct  683   GGLIVDYVGIAESLKEALKEYT-ESDQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKF  741

Query  779   ----RTQAWQLLPKVANHILG-QDDGKKRFADAVLSATKAFALCCTLDEALEHRDELAFL  833
                 +++    +++  + ++G  +D ++RF  +V    KAFALC T   A E  DE+AF+
Sbjct  742   NSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFF  801

Query  834   QATKAALTK--HTTQDKKL--SDEQKEHALRQILSKAVVSAEVVDIFQAAGLNKPDIGIL  889
             +A KA+L K  +  ++ K   +  + E  + Q++S++VV+ +V+D++Q+ GL++PD++IL
Sbjct  802   KAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSIL  861

Query  890   SEEFLDDVRHMKERNLAVELLERLLKDDIKTRFKTNVVKAAKYSELLQESLKRYRNRAIE  949
             S++FL DV  +K++N+AVELL+RLLK+++K+  KTN   + ++SE+L +S+++Y +R+IE
Sbjct  862   SDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIE  921

Query  950   TAQVIEELIAMAKQFQQEAIRGAALGLSPEERAFYDALAANESAVRELGDETLKKIAVEL  1009
             T++VIEELI +AK+++QE  RG  LGL+++E AFYDAL ++E+A + + D  L+ IA EL
Sbjct  922   TSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHEL  981

Query  1010  TLKLRNSVTVDWSVRDAVRASIRVMVKTLLRRYKYPPDKQEEATETVLKQAEMLSAE  1066
             T  ++++++VDWS RD+ +A +RV V+ LL++Y YPPD Q  A E V+ QAE+++++
Sbjct  982   TKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

91) hsdR3 in NC_014145


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  811 bits (3071),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 484/1077 (45%), Positives = 757/1077 (71%), Gaps = 62/1077 (5%)

Query  7     EDHLEQATLQWLSALGWQTAHGPDISPPDARTAGTERDTYRQVCLPHRLAATIQRLNPNI  66
             ED+LEQ  L+WL +L+ +   G +IS  +    + ER + ++V L +RL  +++++N++I
Sbjct  7     EDDLEQVVLEWLESLSYDYKKGNEISMTGL---APERKSDKDVVLHERLEKALRKINSDI  63

Query  67    PTSARDAALRLVLNPNTPGLVAANRQFHRWLVEGVPVE-YQRDGETRGDRVRLIDFSDVG  125
                  + A++ +   ++P L+  N  FH  L++G+ +E Y+ +G++  + V+++DF +  
Sbjct  64    HPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQ  123

Query  126   RNDWLAVNQFTVQGPKHTRRPDLVLFLNGLPLVVLELKNPGDENADIWGAFNQLQAYKDD  185
              ND LAVNQFTV     T+RPD+VLF+NGLP+VV+ELKN+ +E  ++ ++++QL++YK  
Sbjct  124   NNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  186   IPDLFIDNELLVITDGISARMGSLTADRERFMAWRTIDGHTTDPLGSMRELETLVQGAFD  245
             IP+LF  NE+LV +DGI+++ GSLTA+ +RFM+WR+ DG+T  + +S+  L+ L++G ++
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESS-SSLASLDVLINGMLN  242

Query  246   RQTLLDYLQHFILFEDDG-GLVKKV-AGYHQFHAVRAVVDSVLKASAPGGSRKGGVVWHT  303
              +TLLD ++ F+LF+DDG G + K+ A+YHQ+ AV   VD  L AS+  G  KGGV+WHT
Sbjct  243   PKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHT  302

Query  304   QGAGKSIEMTCLAGMLIGHPELQNPTVLMVTDRNDLDNQLFGVFA-----GATELLHETP  358
             QG+GKS+ M  ++G LI    L+NPT+++VTDRNDLDNQL++ F      ++  LL++TP
Sbjct  303   QGSGKSLTMVFFSGKLI--QMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  359   VQAATRPKLRELLGNRPSGGIVFTTIQKFAPGEDEDSFPVLSERSNIIVICDEAHRSQYG  418
              QA TR  L+ LL+   SGGIVFTT+QKF P ++E   + L+ER N+IV+ DEAHR+QYG
Sbjct  361   KQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYG  419

Query  419   FAAKLPGQDDATRRYRQTAAAPLSAQDAGAIGATTALVTAAPASSVRYGYAQYLRDALPN  478
             F AK  +++++                                  ++YGYA+YLRDALPN
Sbjct  420   FNAKYDDKGEG----------------------------------IKYGYAKYLRDALPN  445

Query  479   ATFVAFTGTPVSLEDRDTRAVFGDYVHIYDVEQAVKDGATVPIYYESRLAKLELAEEDTT  538
             ATFV+FTGTPV+  D++T+ VFG+Y+++YD+ QAV DG+TV IYYESR+  L+L++   +
Sbjct  446   ATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQ---S  502

Query  539   WldddvdqlteddeddASKTSKLRRWAALEKLVGAPPRIQKVAADIVEHFENRLAALDGK  598
                D+  +   +D+++  K     +W+ +E L GA PR++ +A DI++HFE R  A+ GK
Sbjct  503   LDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGK  562

Query  599   AMVVGMSREICVHLYDALVALRPEWHDPDPDKGAIKIIMTGSASDKPMLKPHIYTKEVKK  658
             +M+V MSR I V+LYD ++ L+PEWH  D DKG IK++MTGS+SD   ++ HI  K  + 
Sbjct  563   GMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRS  622

Query  659   RLERRYKDPADPFKLVIVRDMWLTGFDAPCLHTMYIDKPMRGHNLMQAIARVNRVFKDKP  718
              LE+R KD  D ++LVIVRDMWLTGFD P +HTMYIDKPM+GHNLMQAIARVNRVFKDKP
Sbjct  623   VLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKP  682

Query  719   GGLVVDYIGIANELKAALKDYTLAHGKGRPTIDTHEALRLLLEKMEVLHGILHGCDYADF  778
             GGL+VDY+GIA+ LK ALK+YT   ++++ +IDT+ A+ L+L K +V++++L   DY+ F
Sbjct  683   GGLIVDYVGIAESLKEALKEYT-ESDQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKF  741

Query  779   ----RTQAWQLLPKVANHILG-QDDGKKRFADAVLSATKAFALCCTLDEALEHRDELAFL  833
                 +++    +++  + ++G  +D ++RF  +V    KAFALC T   A E  DE+AF+
Sbjct  742   NSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFF  801

Query  834   QATKAALTK--HTTQDKKL--SDEQKEHALRQILSKAVVSAEVVDIFQAAGLNKPDIGIL  889
             +A KA+L K  +  ++ K   +  + E  + Q++S++VV+ +V+D++Q+ GL++PD++IL
Sbjct  802   KAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSIL  861

Query  890   SEEFLDDVRHMKERNLAVELLERLLKDDIKTRFKTNVVKAAKYSELLQESLKRYRNRAIE  949
             S++FL DV  +K++N+AVELL+RLLK+++K+  KTN   + ++SE+L +S+++Y +R+IE
Sbjct  862   SDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIE  921

Query  950   TAQVIEELIAMAKQFQQEAIRGAALGLSPEERAFYDALAANESAVRELGDETLKKIAVEL  1009
             T++VIEELI +AK+++QE  RG  LGL+++E AFYDAL ++E+A + + D  L+ IA EL
Sbjct  922   TSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHEL  981

Query  1010  TLKLRNSVTVDWSVRDAVRASIRVMVKTLLRRYKYPPDKQEEATETVLKQAEMLSAE  1066
             T  ++++++VDWS RD+ +A +RV V+ LL++Y YPPD Q  A E V+ QAE+++++
Sbjct  982   TKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

92) hsdR in NC_017390


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  810 bits (3066),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 466/1056 (45%), Positives = 761/1056 (73%), Gaps = 38/1056 (3%)

Query  2     LSEDDLEQLSLGWFAGQGWEVLYGPDIAPDGANPLRTSFQDVFLRPVLRQQLAQINPHLP  61
             ++EDDLEQ+ L W+ + + +   G +I+  G  P R S +DV L+  L + L +IN+++ 
Sbjct  5     FNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIH  64

Query  62    DSVLDEVVSRVTRPESPDIVASNKAFHHLLLTGVPVA-YKRDDQIIHDTALLMDFNRPDH  120
                ++  +  +T   SP+++ +N +FH+ L+ G+ +  Y  ++Q I +   ++DF++P++
Sbjct  65    PRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQN  124

Query  121   NRFSVVNQVAIKGTKQVRRPDVIGYINGLPVAVIELKSPVDANADIWAAFNQLQTYKNEV  180
             N F  VNQ ++      +RPD++ +INGLP+ VIELK++ +   ++  +++QL+TYK  +
Sbjct  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  181   SDLFICNEVLVISDGYNARIGSLTADEERYLPWKTLSNEDDKPVRECQLETVINGFFNRE  240
             ++LF  NEVLV SDG N++ GSLTA+ +R++ W++   E + +     L+ +ING +N  
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPK  244

Query  241   LLLDYLRYFILFEHDGQRTMKKI-AACHQFHAVREAVSATIVAATGQYLLLRSDIKPGSK  299
              LLD +RYF+LF++DG+  + KI AA HQ+ AV  AV  +++A++GQ          G  
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQ----------GDG  294

Query  300   KAGVVWHTQGSGKSISMCCYAGKLLQQAAMNNPTIVVVTDRNDLDGQLYATFCQ-----A  354
             K+GV+WHTQGSGKS++M  ++GKL+Q   +NNPT+V+VTDRNDLD QLY+TF +     +
Sbjct  295   KGGVIWHTQGSGKSLTMVFFSGKLIQ--MLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSG  352

Query  355   KDLLKQEPQQASDREQLRAMLAARGSGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISD  414
             K+LL+Q P+QA  R +L+++L+   SGGI+FTT+QKF P + E   +AL  R N++V++D
Sbjct  353   KGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMAD  411

Query  415   EAHRSQYGLNATLDRQSGAYKYGYAKHMRDALPNAAFMGFTGTPVSAEDKDTRAVFGDYV  474
             EAHR+QYG+NA  D ++ + KYGYAK +RDALPNA+F+GFTGTPV++ DK+T+ VFG+Y+
Sbjct  412   EAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYI  471

Query  475   SIYDIQDAVDDGATVPIYYESRLAKLDLNHDELEALSSQVEELVEDEESGQKEKTKGDWS  534
              +YD+ +AV DG+TV IYYESR+  L+L +  L+ L    +++ ED+E + K++ K+ WS
Sbjct  472   DVYDMTQAVADGSTVKIYYESRVIPLNLPQS-LD-LDEAYNDITEDQEEDVKQRLKSKWS  529

Query  535   RLEKLVGSRPRIEQVAADLVKHFDARNATMNGKAMIVAMSRDICVRLYDALVDLRPQWHS  594
             R+E L G++PR+E +A D+++HF++R+ +M+GK+MIV+MSR I V LYD ++ L+P+WHS
Sbjct  530   RIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHS  589

Query  595   EEVDKGAIKIIMTGSASDKAPLQPHIYNKPTKKRLEARFKDLNDPLKIVIVRDMWLTGFD  654
             ++ DKG IK++MTGS+SD +++Q HI  K  +  LE R KD+ND L++VIVRDMWLTGFD
Sbjct  590   DDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFD  649

Query  655   APCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDAKGK  714
              P  HTMYIDKPM+GHNLMQAIARVNRVFKDKPGGL+VDY+GIA+ LK+ALK YT++ ++
Sbjct  650   VPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQ  708

Query  715   GQTTIDAREAFAILLEKLDIIHGMFAKTPTDAGFDYSAFADN--PQR--VLLDAANYILG  770
             +QT+ID+  A  ++L K D+I++M+ +      +DYS F  +  ++R   + ++ +Y++G
Sbjct  709   AQTAIDTDKAVELMLLKYDVIQDMLYN------LDYSKFNSEKKSERYYTISNTMDYVIG  762

Query  771   L-DEGKKRYFDVVLALNKALSLCSTLDEVKPLQKELAFLSAVKVAMIKL----TTTDQKF  825
             L ++ ++R++  V  L KA++LC+T    + L+ E+AF+ AVK +++KL         + 
Sbjct  763   LGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRK  822

Query  826   SQSEKHSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLQEVQDMPQRNLAVELL  885
             + +E ++ +++++ +++V+ +V DV+   GL++P++++LSD+FL++V+++ Q+N+AVELL
Sbjct  823   TPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELL  882

Query  886   QKLLNDGIHARTNNNVVQEKKYSERLKAVLLRYHNRAIETAQVIEELIQMAKDFQAAMAR  945
             ++LL++ + +  + N    K++SE L   + +Y++R+IET++VIEELIQ+AKD++    R
Sbjct  883   NRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQR  942

Query  946   DDALGLNPDEIAFYDALAENESAVRELGDEILKKLAVEVTQKLRQSTTVDWQKRESVRAR  1005
             ++ LGLN+DEIAFYDAL  +E+A + + D  L+ +A E+T+ ++++ +VDW KR+S +A+
Sbjct  943   GNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAK  1002

Query  1006  LRILVRQTLRKYKYPPDKTPYAVELILKQAEVMSNS  1041
             +R+ VR+ L+KY YPPD    AVE ++ QAE+M+++
Sbjct  1003  MRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

93) EpC_05850 in NC_012214


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  810 bits (3066),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 466/1056 (45%), Positives = 761/1056 (73%), Gaps = 38/1056 (3%)

Query  2     LSEDDLEQLSLGWFAGQGWEVLYGPDIAPDGANPLRTSFQDVFLRPVLRQQLAQINPHLP  61
             ++EDDLEQ+ L W+ + + +   G +I+  G  P R S +DV L+  L + L +IN+++ 
Sbjct  5     FNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIH  64

Query  62    DSVLDEVVSRVTRPESPDIVASNKAFHHLLLTGVPVA-YKRDDQIIHDTALLMDFNRPDH  120
                ++  +  +T   SP+++ +N +FH+ L+ G+ +  Y  ++Q I +   ++DF++P++
Sbjct  65    PRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQN  124

Query  121   NRFSVVNQVAIKGTKQVRRPDVIGYINGLPVAVIELKSPVDANADIWAAFNQLQTYKNEV  180
             N F  VNQ ++      +RPD++ +INGLP+ VIELK++ +   ++  +++QL+TYK  +
Sbjct  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  181   SDLFICNEVLVISDGYNARIGSLTADEERYLPWKTLSNEDDKPVRECQLETVINGFFNRE  240
             ++LF  NEVLV SDG N++ GSLTA+ +R++ W++   E + +     L+ +ING +N  
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPK  244

Query  241   LLLDYLRYFILFEHDGQRTMKKI-AACHQFHAVREAVSATIVAATGQYLLLRSDIKPGSK  299
              LLD +RYF+LF++DG+  + KI AA HQ+ AV  AV  +++A++GQ          G  
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQ----------GDG  294

Query  300   KAGVVWHTQGSGKSISMCCYAGKLLQQAAMNNPTIVVVTDRNDLDGQLYATFCQ-----A  354
             K+GV+WHTQGSGKS++M  ++GKL+Q   +NNPT+V+VTDRNDLD QLY+TF +     +
Sbjct  295   KGGVIWHTQGSGKSLTMVFFSGKLIQ--MLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSG  352

Query  355   KDLLKQEPQQASDREQLRAMLAARGSGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISD  414
             K+LL+Q P+QA  R +L+++L+   SGGI+FTT+QKF P + E   +AL  R N++V++D
Sbjct  353   KGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMAD  411

Query  415   EAHRSQYGLNATLDRQSGAYKYGYAKHMRDALPNAAFMGFTGTPVSAEDKDTRAVFGDYV  474
             EAHR+QYG+NA  D ++ + KYGYAK +RDALPNA+F+GFTGTPV++ DK+T+ VFG+Y+
Sbjct  412   EAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYI  471

Query  475   SIYDIQDAVDDGATVPIYYESRLAKLDLNHDELEALSSQVEELVEDEESGQKEKTKGDWS  534
              +YD+ +AV DG+TV IYYESR+  L+L +  L+ L    +++ ED+E + K++ K+ WS
Sbjct  472   DVYDMTQAVADGSTVKIYYESRVIPLNLPQS-LD-LDEAYNDITEDQEEDVKQRLKSKWS  529

Query  535   RLEKLVGSRPRIEQVAADLVKHFDARNATMNGKAMIVAMSRDICVRLYDALVDLRPQWHS  594
             R+E L G++PR+E +A D+++HF++R+ +M+GK+MIV+MSR I V LYD ++ L+P+WHS
Sbjct  530   RIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHS  589

Query  595   EEVDKGAIKIIMTGSASDKAPLQPHIYNKPTKKRLEARFKDLNDPLKIVIVRDMWLTGFD  654
             ++ DKG IK++MTGS+SD +++Q HI  K  +  LE R KD+ND L++VIVRDMWLTGFD
Sbjct  590   DDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFD  649

Query  655   APCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDAKGK  714
              P  HTMYIDKPM+GHNLMQAIARVNRVFKDKPGGL+VDY+GIA+ LK+ALK YT++ ++
Sbjct  650   VPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQ  708

Query  715   GQTTIDAREAFAILLEKLDIIHGMFAKTPTDAGFDYSAFADN--PQR--VLLDAANYILG  770
             +QT+ID+  A  ++L K D+I++M+ +      +DYS F  +  ++R   + ++ +Y++G
Sbjct  709   AQTAIDTDKAVELMLLKYDVIQDMLYN------LDYSKFNSEKKSERYYTISNTMDYVIG  762

Query  771   L-DEGKKRYFDVVLALNKALSLCSTLDEVKPLQKELAFLSAVKVAMIKL----TTTDQKF  825
             L ++ ++R++  V  L KA++LC+T    + L+ E+AF+ AVK +++KL         + 
Sbjct  763   LGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRK  822

Query  826   SQSEKHSLLSRILDNAIVATGVDDVFALAGLDKPNIGLLSDEFLQEVQDMPQRNLAVELL  885
             + +E ++ +++++ +++V+ +V DV+   GL++P++++LSD+FL++V+++ Q+N+AVELL
Sbjct  823   TPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELL  882

Query  886   QKLLNDGIHARTNNNVVQEKKYSERLKAVLLRYHNRAIETAQVIEELIQMAKDFQAAMAR  945
             ++LL++ + +  + N    K++SE L   + +Y++R+IET++VIEELIQ+AKD++    R
Sbjct  883   NRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQR  942

Query  946   DDALGLNPDEIAFYDALAENESAVRELGDEILKKLAVEVTQKLRQSTTVDWQKRESVRAR  1005
             ++ LGLN+DEIAFYDAL  +E+A + + D  L+ +A E+T+ ++++ +VDW KR+S +A+
Sbjct  943   GNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAK  1002

Query  1006  LRILVRQTLRKYKYPPDKTPYAVELILKQAEVMSNS  1041
             +R+ VR+ L+KY YPPD    AVE ++ QAE+M+++
Sbjct  1003  MRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

94) Rfer_0028 in NC_007908


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  807 bits (3056),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 485/1062 (46%), Positives = 751/1062 (71%), Gaps = 51/1062 (4%)

Query  3     ESDLEQLALTWFQDTGWDYRAGPDIAPDSDSPQRSDYRQMLLQGELREALSRLNPQVPAA  62
             E DLEQ+ L W++  + DY+ G +I+  + +P+R   ++++L+  L  AL ++N+++ + 
Sbjct  7     EDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHPR  66

Query  63    VLDDVAHQLSKPDHPSLIQSNRAFHEALvggvpvev-evngerrgdrvvLVDFDTPERNR  121
              ++   H+L+    P+L+++N +FHE L+ G+ +E  + +G+   + V +VDF+ P+ N 
Sbjct  67    FIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNND  126

Query  122   FLVVNQFTVQGSKQPRRPDLVCFINGLPIAVIELKNLAAEQVGVQDAFHQLQTYKDELAD  181
             FL VNQFTV  +   +RPD+V FINGLPI VIELKN + E VGV+D++HQL+TYK  +++
Sbjct  127   FLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQ  186

Query  182   LFVTNEALVASDGLHARIGSLTASFERFLPWRTVKNENDRPLLEFELEKVVRGFFAPALL  241
             LF  NE LV+SDG++++ GSLTA+++RF+ WR+   E + +     L+ ++ G + P  L
Sbjct  187   LFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPKTL  246

Query  242   LDYLRYFVLF-EMADGQVVKKIAAYHQFHavraavkaaviaatppatnaaQEQWASYAER  300
             LD +RYFVLF + + G++ K +AAYHQ+ AV  AV                 ++A  A  
Sbjct  247   LDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAV-----------------DRALLASS  289

Query  301   VKPGSRMGGIVWHTQGSGKSISMVCFAAKLMQQPEMHNPTLVVVTDRNDLDGQLFQTFV-  359
              + +++ GG++WHTQGSGKS++MV F++KL+Q   ++NPTLV+VTDRNDLD QL+ TFV 
Sbjct  290   GQGDGK-GGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVK  346

Query  360   ----GARSLLREQPQQAGSRDELRALLAGRPSGGIIFTTVQKFTPDAGEEVFPLLSERNN  415
                 ++++LLR+ P+QA +R EL++LL+   SGGI+FTT+QKF P+  E + + L+ER+N
Sbjct  347   SKGRSGKGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKN  405

Query  416   IVVMADEAHRSQYGFRAVLDKKTGKYKYGFAKHLRDALKNATFVGFTGTPIEAGDHDTRA  475
             ++VMADEAHR+QYGF A  D K    KYG+AK LRDAL NATFVGFTGTP+ + D +T+ 
Sbjct  406   VIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQM  465

Query  476   VFGEYVSIYDIQDAVDDGATVPIFYESRLAKLNLNQ-VEMEKLNadvedvfedeedaali  534
             VFG+Y+ +YD+ +AV DG+TV I+YESR+  LNL Q ++++       + + ++++  + 
Sbjct  466   VFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSLDLDE----AYNDITEDQEEDVK  521

Query  535   eaeKTRWAALEKLVGAKERVDLVAADIVQHFEARNTAVAGKGMVVAMSREICARLYAAII  594
             +  K++W+ +E L GAK RV+ +A DI+QHFE+R+ A+ GKGM+V+MSR I   LY  II
Sbjct  522   QRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEII  581

Query  595   KLRPDWHSDDPAQGAIKVVMTGSAADATLLQPHIYNSAAKKLLERRFKDATDPLKLVIVR  654
             +L+P+WHSDD  +G IKVVMTGS++D+T +Q HI     + +LE+R KD  D L+LVIVR
Sbjct  582   RLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVR  641

Query  655   DMWLTGFDVPCLHTMYIDKPMRDHNLMQAIARVNRVFRDKEGGLVVDYIGIAAELRKALR  714
             DMWLTGFDVP +HTMYIDKPM++HNLMQAIARVNRVF+DK GGL+VDY+GIA  L+ AL+
Sbjct  642   DMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALK  701

Query  715   TYTESKGKGQPTLDATEALAKLQELM----EVARHLLHGFDFSAYRTQATT----LLLPA  766
              YTES +++Q ++D+  A+    ELM    +V +++L  +D+S + ++  +     +  +
Sbjct  702   EYTES-DQAQTAIDTDKAV----ELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNT  756

Query  767   ANFVLGL-DDGKKRWADVVLAITKAFSLCGTLDDAALLREEIAFFQAIKAVIAK----AT  821
              ++V+GL +D ++R    V  + KAF+LC+T   A  L +EIAFF+A+KA + K    + 
Sbjct  757   MDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPK  816

Query  822   TSDAKLSEEGRNAVLKQILDNAVVAEGVEDIFKLAGLERPDIGILSDAFLEEVRQLPQRN  881
              + ++ +    +A ++Q++ ++VV+E+V D+++  GLE+PD++ILSD FL +V  L Q+N
Sbjct  817   EGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKN  876

Query  882   FAVELLQKLLNDQVKSRMRTNVVMERKFSERLQAALNRYLSRAVESAQVIEELIAMAKEF  941
              AVELL++LL++QVKS M+TN  + ++FSE L  ++N+Y SR++E+++VIEELI +AK++
Sbjct  877   VAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDI  936

Query  942   REAALRGNKLGLNTSELAFYDALTDNESAVREMDDEVLKKIAVEITEKLRNSTSVDWQKR  1001
             ++   RGN LGLN+ E+AFYDAL  +E+A + M+D  L+ IA E+T  ++++ SVDW KR
Sbjct  937   KQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKR  996

Query  1002  ESVRARLRNLVRITLRRYKYPPDMQEEAIRLVLEQAERLSDA  1043
             +S +A++R  VR  L++Y YPPD+Q  A+  V+EQAE ++  
Sbjct  997   DSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

95) STH1908 in NC_006177


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  806 bits (3050),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 486/1075 (46%), Positives = 751/1075 (70%), Gaps = 60/1075 (5%)

Query  4     LSEETLEQAALEWLRELGWAVAHGPDISPVDANTPGTERESYRQVVLTGRLREAIRGLNP  63
             ++E+ LEQ  LEWL  L+     G +IS       + ER S ++VVL  RL  A+R +N+
Sbjct  5     FNEDDLEQVVLEWLESLSYDYKKGNEIS---MTGLAPERKSDKDVVLHERLEKALRKINS  61

Query  64    HIPASAQEDALRQVVSPNIPGLVQANRQFHRWLVEGVPVE-FQKDGETRGDRVRLVDFTD  122
             +I +   E A++++   + P L++ N  FH  L++G+ +E ++ +G++  + V++VDF +
Sbjct  62    DIHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEH  121

Query  123   PSRNDWLAVNQLSIQGPKKVRRPDIILYLNGLPIVVIELKNPADESADIWAAFNQLQAYK  182
             P  ND LAVNQ+++      +RPDI+L++NGLPIVVIELKN+++E+ ++  +++QL++YK
Sbjct  122   PQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYK  181

Query  183   EDIPDLFVYNELLVISDGLSARMGSLTANRERFMAWRTIDGHEIDPLGEMRELETLIRGA  242
               IP+LF +NE+LV SDG++++ GSLTAN +RFM+WR+ DG E ++ + +  L+ LI G 
Sbjct  182   MRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDG-ETESSSSLASLDVLINGM  240

Query  243   FRHDLLLEYLRYFILFEEDG--HLVKKVAGYHQFHAVRAVVESVLKASAPGGSRKGGVVW  300
             +    LL+ +RYF+LF++DG  H+ K +A+YHQ+ AV   V+  L AS+  G  KGGV+W
Sbjct  241   LNPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIW  300

Query  301   HTQGAGKSLEMTCLAGRLMSHPDLKNPTIVVVTDRNDLDNQLFGVFA-----GATELLRE  355
             HTQG+GKSL M  ++G+L+    L+NPT+V+VTDRNDLDNQL++ F      ++  LLR+
Sbjct  301   HTQGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQ  358

Query  356   TPVQAETRPRLRELLANRPSGGIIFTTIQKFMPGEDEDTFPVLSERTNIIVICDEAHRSQ  415
             TP QAETR  L+ LL+   SGGI+FTT+QKF P ++E   + L+ER N+IV+ DEAHR+Q
Sbjct  359   TPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQ  417

Query  416   YGFAARLSLPERRRRPATAPMGSGGDLSDQIAAETPGGNYAVRYGYAQHMRDALPGATFV  475
             YGF A+               G G                 ++YGYA+ +RDALP ATFV
Sbjct  418   YGFNAKYD-----------DKGEG-----------------IKYGYAKYLRDALPNATFV  449

Query  476   AFTGTPVALEDRNTRAVFGDYVHIYDVLQAVKDGATVPIYYESRLAKLDLKEEEIPRIde  535
             +FTGTPVA  D+NT+ VFG+Y+++YD+ QAV DG+TV IYYESR+  L+L +     +D 
Sbjct  450   GFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQS----LDL  505

Query  536   aveeltedeeddaaraaQYR-RWTALEKLVGAPPRIQKVAADLVAHFERRLAAMDGKAMV  594
                     E+++     + + +W+ +E L GA PR++ +A D++ HFE R  AM GK+M+
Sbjct  506   DEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMI  565

Query  595   VCMSREICVHMYNAIVALRPEWHDPDPEKGVIKIVMTGSAADKPLLRPHIYSKEVRKRLE  654
             V MSR I V++Y+ I+ L+PEWH  D +KGVIK+VMTGS++D   ++ HI +K  R  LE
Sbjct  566   VTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLE  625

Query  655   RRFKDPNDPFKIVIVRDMWLTGFDAPCLHTMYIDKPMRGHNLMQAIARVNRVFRDKPGGL  714
             +R KD ND +++VIVRDMWLTGFD P +HTMYIDKPM+GHNLMQAIARVNRVF+DKPGGL
Sbjct  626   KRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGL  685

Query  715   VVDYIGISHELKQALREYTAARGRGEPAIDAERALDILREKMDVLRAMLHGCDYSAFRTE  774
             +VDY+GI++ LK+AL+EYT + ++++ AID+++A++++  K DV++ ML   DYS F +E
Sbjct  686   IVDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSE  744

Query  775   AMA----LLPKVANHILGLEDGQK-RFADHVVAASRAFALCCTLEGALAYRDELAFFQAV  829
               +     +++  + ++GL ++++ RF   V   ++AFALC T   A    DE+AFF+AV
Sbjct  745   KKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAV  804

Query  830   KAALSK-----RAETDRKVADERKEAALRQIIAQAVVSDEVVDIFAAAGLSKPDISILSE  884
             KA+L K     +    RK + E  EA + Q+++Q+VV+++V+D++ + GL +PD+SILS+
Sbjct  805   KAGLVKLLQPPKEGKTRKTPAEV-EAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSD  863

Query  885   EFLDEVRRMKERNLAVELLQRLIKNEIKARFETNVVQSARFSDLLQQALTRYRNRTIETA  944
             +FL +V  +K++N+AVELL+RL+K ++K+   TN   S RFS++L +++ +Y +R+IET+
Sbjct  864   DFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETS  923

Query  945   QVIEELIAMARRFQEEARRGEQLGLNEDELAFYDALASNESAVRELGDEVLKKMAVELTE  1004
             +VIEELI +A+ +++E +RG++LGLN DE+AFYDAL S+E+A + + D  L+ +A ELT 
Sbjct  924   KVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTK  983

Query  1005  RLRKSVTVDWARRETvrarlrvmvrtllrrYKYPPDRQEAATNLVLKQAEVLSQE  1059
              ++ +++VDW++R++ +A++RV VR LL++Y YPPD Q  A + V+ QAE+++ +
Sbjct  984   TVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

96) H650_18270 in NC_021500


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  804 bits (3043),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 478/1056 (46%), Positives = 753/1056 (72%), Gaps = 39/1056 (3%)

Query  2     LSEDDLEQQCLQWFVEQDWEVLHGPDIAPDGDNPLRASFHDVFLRPVMLEQLQTINPHLP  61
             ++EDDLEQ  L+W+     +   G +I+  G  P R S  DV L+  +   L+ IN+++ 
Sbjct  5     FNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIH  64

Query  62    VSVLEEVILRITRPESPDLVVSNKAFHHLLLDGVPVE-YKRDDKVIHDNALLMDFNHPDN  120
                +E  I  +T   SP+L+ +N +FH+ L++G+ +E Y  +++ I +   ++DF+HP+N
Sbjct  65    PRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQN  124

Query  121   NRFMVVNQVAIQGIKQVRRPDVIGYINGLPVAVIELKSPIDANADIWAAFNQLQTYKNEL  180
             N F+ VNQ ++      +RPD++ +INGLP+ VIELK++ +   ++  +++QL+TYK  +
Sbjct  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  181   SDLFICNEALVVSDGQNARIGSLTADEERFLPWKTVANEDDKPQFDWQLKTVVQGFFNRA  240
             ++LF  NE LV SDG N++ GSLTA+ +RF+ W++   E + +     L  +++G +N  
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPK  244

Query  241   LLLDYIRYFVLFESDGKRLIKKI-AAYHQFHAVREAVAATIVASTGKHLPLRSNITPGSK  299
              LLD IRYFVLF+ DGK  I KI AAYHQ+ AV  AV  +++AS+G           G  
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSG----------QGDG  294

Query  300   KAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYATFCQ-----A  354
             K+GV+WHTQGSGKS++M  ++GKL+Q   +NNPT+V+VTDRNDLD QLY+TF +     +
Sbjct  295   KGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSG  352

Query  355   QDLLKQTPLQANDRDELRELLNARESGGIIFTTVQKFAPLDSEQSHPALNQRSNIVVISD  414
             ++LL+QTP QA+ R EL+ LL+  ESGGI+FTT+QKF P ++E   +AL +R N++V++D
Sbjct  353   KGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMAD  411

Query  415   EAHRSQYGLSATLDRETGVYKYGYAKHMRDALPNASFMGFTGTPIASEDKDTRAVFGDYV  474
             EAHR+QYG++A  D      KYGYAK +RDALPNA+F+GFTGTP+AS DK+T+ VFG+Y+
Sbjct  412   EAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYI  471

Query  475   SIYDIQDAVDDGATVPIYYESRLAKLDLNHEELETLSDQVDELVEDEETGQQEKTKGDWS  534
              +YD+ +AV DG+TV IYYESR+  L+L +  L+ L +  +++ ED+E + +++ K+ WS
Sbjct  472   DVYDMTQAVADGSTVKIYYESRVIPLNLPQS-LD-LDEAYNDITEDQEEDVKQRLKSKWS  529

Query  535   RLEKLVGSEPRIKQVAADLVQHFETRNAAMNGKAMIVAMSRDICVKLYDAIVAIRPEWHS  594
             R+E L G+ PR+  +A D++QHFETR+ AM+GK+MIV+MSR I V LYD I+ ++PEWHS
Sbjct  530   RIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHS  589

Query  595   EDVEQGAIKVIMTGSASDKDHLQSHIYNKQTKKRLEARFKDLNDQLKLVIVRDMWLTGFD  654
             +D ++G IKV+MTGS+SD   +Q HI  K+ +  LE R KD+ND+L+LVIVRDMWLTGFD
Sbjct  590   DDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFD  649

Query  655   APCCHTMYIDKPMRGHNLMQAIARVNRVFRDKPGGLVVDYIGIANELKQALKTYTDSKGK  714
              P  HTMYIDKPM+GHNLMQAIARVNRVF+DKPGGL+VDY+GIA+ LK+ALK YT+S ++
Sbjct  650   VPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQ  708

Query  715   GQTTVDAREAFAILLEKMDVIHGMFARSAGKPGFDYTGFSRDPLA--F--LRDAVNYILG  770
             +QT++D+  A  ++L K DVI++M+        +DY+ F+ +  +  +  + ++++Y++G
Sbjct  709   AQTAIDTDKAVELMLLKYDVIQDMLY------NLDYSKFNSEKKSERYYTISNTMDYVIG  762

Query  771   L-DDGKKRYLDVSLAMSKAWSLCNTIDEAKPLQEEFAFLSAIRVGLIKL-----DPKAKF  824
             L +D ++R++     ++KA +LC T   A+ L++E+AF+ A++ GL+KL     + K++ 
Sbjct  763   LGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRK  822

Query  825   SQSEKNSLLSKILDNAVVATGVEDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELL  884
             + +E ++ +++++ ++VV+ +V DV+   GL++P++++LSD+FL +V  + Q+N+AVELL
Sbjct  823   TPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELL  882

Query  885   EKLLNDGIHARSGNNVVQQKKYSDRLKAVLVKYNNRAIETAQVIEELIQMAKEFQEAMAR  944
             ++LL++ + +    N    K++S+ L   + KYN+R+IET++VIEELIQ+AK++++   R
Sbjct  883   NRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQR  942

Query  945   DDALGLNPDEIAFYDALAENESAVRKLGDDILKKLAIEVTAQLRKSTTVDWQVRESVRAR  1004
             ++ LGLN+DEIAFYDAL  +E+A + + D  L+ +A E+T  ++ + +VDW  R+S +A+
Sbjct  943   GNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAK  1002

Query  1005  LRVLVRQTLRKYKYPPDKTPYTVELILKQAEVVSNS  1040
             +RV VR+ L+KY YPPD    +VE ++ QAE+++++
Sbjct  1003  MRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

97) SCE1572_29155 in NC_021658


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  802 bits (3034),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 479/1023 (47%), Positives = 749/1023 (74%), Gaps = 21/1023 (2%)

Query  11    TESDVEELALQTFARLGYECLHGPDIAPGEPAAERATYADVVLRGRLDEALRRLNPGVPQ  70
              E D+E++ L+ +  L+Y+   G +I+    A+ER +  DVVL+ RL+ ALR++N+++  
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  71    TAIHEALRKILVPDAPSLLQNNRRFHRLLRDGVEVEIATPGGEVRGERLRLFDFDDIEEN  130
               I+ A++ + +  +P+LL+NN  FH  L +G+E+E     G+   E +++ DF++ ++N
Sbjct  66    RFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNN  125

Query  131   EYLVVNQLTVIEGPHRHRRPDIVVFVNGVPLAVVELKSPADENATVQGAFNQLQTYKAEI  190
             ++L VNQ+TV++G    +RPDIV+F+NG+P+ V+ELK++++E   V+++++QL+TYK  I
Sbjct  126   DFLAVNQFTVVNGDYT-KRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  191   PSLFVYNELLVVSDGTTARLGTLTSSWERFGPWRTVDGSAVAARGTLEMITLLEGVFDRA  250
             P LF +NE+LV SDG  ++ G+LT++ +RF  WR+ DG + ++ +   +  L++G+++  
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPK  244

Query  251   RLLDLVRHfvvfeedrdevvKKI-AGYHQFHAVRTAVEETVRATRPGGDRKVGVVWHTQG  309
              LLDL+R FV+F++D    + KI A+YHQ+ AV  AV+ ++ A+   GD K GV+WHTQG
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQG  304

Query  310   SGKSLTMTFYAGKVVLDPAMENPTIVVITDRNDLDDQLFGTFGRCHE-----LLRQKPVQ  364
             SGKSLTM F++GK++    ++NPT+V++TDRNDLD+QL++TF +        LLRQ P Q
Sbjct  305   SGKSLTMVFFSGKLI--QMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQ  362

Query  365   ARDRSHLRELLQVAAGGVVFTTVQKFLPEEKGDRFPRLSERRNVVVIADEAHRSQYGFKS  424
             A  R +L+ LL V +GG+VFTT+QKF PE++    + L+ER+NV+V+ADEAHR+QYGF++
Sbjct  363   AETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFNA  422

Query  425   KLVKTKDG-GYLVPGFAQHMRDALPSASFIGFTGTPIEAVDKDTRAVFGDYISVYDIQRA  483
             K     +G  Y   G+A+ +RDALP+A+F+GFTGTP+ + DK+T+ VFG+YI VYD+ +A
Sbjct  423   KYDDKGEGIKY---GYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQA  479

Query  484   VEDGATVPIYYESRVAKLDLNDDLKKVIDDefeevteqeeesrkeKLKSKWAALEAVVGA  543
             V DG+TV IYYESRV  L+L + L   +D+ ++++TE++EE  K++LKSKW+ +EA+ GA
Sbjct  480   VADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGA  537

Query  544   EKRVNMIAEDLIRHFEARVEAMEGKAMVVCMSRRICVDMYAALVALRPAWHSPDDDKGAI  603
               RV+ +A D+I+HFE+R +AM GK+M+V MSRRI VD+Y  ++ L+P WHS DDDKG I
Sbjct  538   KPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVI  597

Query  604   KVVMTGSASDPQPWQQHIRNKARLRDLADRLKDPADPLKVVIVRDMWLTGFDAPCLHTLY  663
             KVVMTGS+SDP + Q+HI  K R   L  R+KD  D L++VIVRDMWLTGFD P +HT+Y
Sbjct  598   KVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMY  657

Query  664   VDKPMQGHGLMQAIARVNRVFRDKPGGLVVDYLGLAENLRKALATYTESGGKGDPARDHA  723
             +DKPM+GH LMQAIARVNRVF+DKPGGL+VDY+G+AE+L+ AL  YTES ++++ A D  
Sbjct  658   IDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTD  716

Query  724   RAVPRMMEMIEVCRGLFHGFDVMAFVNGSPIERLMLLPAAQEHIFGL-EDGRDRLVQAVT  782
             +AV  M+   +V ++++  +D   F +    ER   ++ + + ++GL ED R+R++++VT
Sbjct  717   KAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVT  776

Query  783   ELSRSFALAVPHDDALAVRDEVAFYQAVKAAVVK----TSLSASGKSEAEVELAIRQIVS  838
             EL+++FAL   +  A  + DE+AF++AVKA++VK       + + K+ AEVE  I Q+VS
Sbjct  777   ELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVS  836

Query  839   KAISTDGVMDVFAAAGLKRPDLSILSEEFLADVKAMQHKNVAVELLRKLLHDELKVRRRT  898
             +++ T++V+DV+ + GL +PDLSILS++FL DV ++++KNVAVELL +LL +++K   +T
Sbjct  837   QSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKT  896

Query  899   NLVQSEAFSDKLEKTIARYRNRGVETAQVIEELIRMARDVKVAQKRGEDLKLNDAELAFY  958
             N   S  FS+ L ++I +Y +R++ET++VIEELI++A+D+K  Q+RG++L LN  E+AFY
Sbjct  897   NATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFY  956

Query  959   DALGANDSAVQVLGDAVLAQIARELTETIRNSVTIDWAVKEtvraklrtlvrrrlkkHGY  1018
             DAL ++++A + + D  L  IA+ELT T+++++++DW+ +++ +AK+R  VRR LKK GY
Sbjct  957   DALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGY  1016

Query  1019  PPD  1021
             PPD
Sbjct  1017  PPD  1019

98) PSM_A2849 in NC_014803


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  802 bits (3034),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 469/1067 (44%), Positives = 757/1067 (71%), Gaps = 50/1067 (4%)

Query  3     TEDQLEQLCLNWFQGIGYQYICGYDIAPNEPAAERSDYRQVILHGRLLAQLKVINPHIPL  62
              ED+LEQ+ L+W+++++Y+Y  G +I+    A+ER   ++V+LH RL   L+ IN++I  
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  63    ATLEEVALNLGKAETPILIKNNKGFHQALLQGVKVE-YKVNDESKTDNTRTGYVQLVDFN  121
               +E    +L    +P L+ NN  FH+ L++G+ +E Y  +++S  +      V++VDF+
Sbjct  66    RFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEI-----VKIVDFE  120

Query  122   DVNKNQFLVVNQFTLTGTKGNRRPDVMVFINGLPLALLELKNPIDNNADIWQAFQQIQTY  181
             + ++N+FL VNQFT+      +RPD+++FINGLP+ ++ELKN+ ++  ++ ++++Q++TY
Sbjct  121   HPQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  182   KDELPDLFIFNEALVVSDGLTARVGSLTANKERFVPWRTVNSEDDKPLFEYQLETLVKGF  241
             K  +P+LF FNE LV SDG+ ++ GSLTAN +RF+ WR+ ++E + +     L+ L++G 
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGM  240

Query  242   FQPALFLDYLRHFILFEEDDGKTIKKI-AGYHQFHAVRAAVKATLIAEAKAQLAEPRANY  300
             ++P  +LD +R F+LF++D+   I KI A+YHQ+ AV  AV  +L+A +           
Sbjct  241   LNPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASS-----------  289

Query  301   VDKVQAGSGKAGVVWHTQGSGKSISMLCYAGKLMAQPQMNNPTIVVVTDRNDLDGQLYNT  360
                   G GK+GV+WHTQGSGKS++M+ ++GKL+    +NNPT+V+VTDRNDLD QLY+T
Sbjct  290   ----GQGDGKGGVIWHTQGSGKSLTMVFFSGKLI--QMLNNPTLVIVTDRNDLDNQLYST  343

Query  361   FCMAADT-----LKQTPVQAGDRDELRDILTARQAGGIIFTTIQKFALLADEKSHPKLSE  415
             F  + +      L+QTP QA  R EL+ +L+  ++GGI+FTT+QKF    +E   + L+E
Sbjct  344   FVKSKGRSGKGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTE  402

Query  416   RHNIVVISDEAHRSQYGDKAKLNSKTGEYTFGYSKHLRDALPQATFIGFTGTPIDAADKD  475
             R N++V++DEAHR+QYG +AK + K     +GY+K LRDALP+ATF+GFTGTP+ ++DK+
Sbjct  403   RKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKN  462

Query  476   TRAVFGDYVSVYDIQDAVDDGATVPIYYESRLAKLDINQA-DIESLNddvdeviedeedi  534
             T+ VFG+Y+ VYD+ +AV DG+TV IYYESR+  L++ Q+ D++       + I ++++ 
Sbjct  463   TQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSLDLDE----AYNDITEDQEE  518

Query  535   SSRENTKSKWAALEKLVGSEPRVNLVAKDLVAHFSERTNTMQGKGMIVAMSREICADLYN  594
               ++  KSKW+ +E L G+ PRV+ +AKD++ HF  R ++M+GKGMIV+MSR I  DLY+
Sbjct  519   DVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYD  578

Query  595   AIIAIKPDWHDDDPAKGAIKIVMTGSASDKAKLQPHIYNKETKKLFEKRFKDVNDPLQLV  654
              II +KP+WH DD  KG IK+VMTGS+SD + +Q HI  K  + ++EKR KDVND LQLV
Sbjct  579   EIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLV  638

Query  655   IVRDMWLTGFDAPNCHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKA  714
             IVRDMWLTGFD P+ HTMYIDKPMKGHNLMQAIARVNRVFKDKPGGL+VDY+GIA+ LK 
Sbjct  639   IVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKE  698

Query  715   ALHTYTNSNGRGQPTHDAHEAFAVLLEKMDIVRGMLHGCDYSDYETHALQ----LLPKVM  770
             AL  YT+S+ ++Q + D++ A  ++L K D++++ML   DYS ++++        +++ M
Sbjct  699   ALKEYTESD-QAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTM  757

Query  771   NHILSLPNSGDGKLDGKKRFLDVMAALSKAYTLCGTLDEVAPLKTEIAFFAAVKSALGKF  830
             + +++L +      D ++RF+  ++ L+KA++LC+T      L+ EIAFF AVK++L K+
Sbjct  758   DYVIGLGE------DERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKL  811

Query  831   TTVDK----RRTDEDKNTALKHIIDNALIAEGVDDIFKLVGLDKPNIGLLSPEFMEDVAN  886
                 K    R+T  + ++ +++++ +++++E+V D+++ +GL++P++++LS +F+ DV  
Sbjct  812   LQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEG  871

Query  887   MKEKNLAVDLLERLLRDEIKARMKTDVVSEKKYSDRILETLRKYHNRAIETAQVIEELIk  946
             +K+KN+AV+LL+RLL++++K+ MKT+    K++S+ + +++ KY++R+IET++VIEELI+
Sbjct  872   LKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQ  931

Query  947   makdmaadaemaeNSGLNTDEIAFYRALIQNESAVRELGDDSLRSLAKEVTEKLRKSTTV  1006
             +AKD+  + + +++ GLN+DEIAFY AL+ +E+A + + D  LR++A E+T  ++ + +V
Sbjct  932   LAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSV  991

Query  1007  DWQVRDSVRAKLRNLVRRALRKFKYPPDKADEAIELCLKQAEALSNS  1053
             DW  RDS +AK+R  VRR L+K+ YPPD    A+E  + QAE ++++
Sbjct  992   DWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

99) TSC_c12320 in NC_014974


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  800 bits (3030),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 454/976 (47%), Positives = 725/976 (75%), Gaps = 39/976 (3%)

Query  6     GADLIQRNRAVHRMLVDGVTVEYRTSEGAIRGAQARVIDFDDPENNDWLAVNQFTVVENR  65
             +++L++ N + H  L++G+ +E    EG       +++DF++P+NND LAVNQFTVV+  
Sbjct  80    SPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNNDFLAVNQFTVVNGD  139

Query  66    HRRRPDVVLFVNGLPLAVIEFKNPTDKKATIWSAYRQLQTYKAEIPSLLVYNEALVISDG  125
               +RPD+VLF+NGLP+ VIE+KN+T+    +  +Y+QL+TYK  IP L+ +NE LV SDG
Sbjct  140   YTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTSDG  199

Query  126   LEARIGTLTADRDRFMPWRTITGEDVAPAEMPQLEVLLKGVFERRRFLELVRGFVVFEDE  185
             ++++ G+LTA+ DRFM WR+  GE  +++ ++ L+VL++G+++ + +L+L+R FV+F+D+
Sbjct  200   INTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPKTLLDLIRYFVLFQDD  259

Query  186   GGGKLAKKMAGYHQFHAVRVAVEETLRAAARYEAGRQPGGKPGDRRIGVVWHTQGSGKSL  245
             G G ++K +A+YHQ+ AV  AV+ +L           +++  GD + GV+WHTQGSGKSL
Sbjct  260   GKGHISKILAAYHQYYAVNKAVDRAL----------LASSGQGDGKGGVIWHTQGSGKSL  309

Query  246   TMVFYAGRIIRHPRMENPTIVVLTDRNDLDGQLFGVFSRCRE-----LLGQDPIQAESRA  300
             TMVF++G++I+   ++NPT+V++TDRNDLD QL++ F + +      LL Q P QAE+R 
Sbjct  310   TMVFFSGKLIQ--MLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRK  367

Query  301   HLRELLQGRQSGGVIFTTIQKFLPEEKGDRYPQLSDRRNIVVIADEAHRSQYDFID----  356
             +L+ LL + +SGG++FTT+QKF PE++    + L++R+N++V+ADEAHR+QY+F      
Sbjct  368   ELKSLL-SVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFNAKYDD  426

Query  357   -------GFARHMRDALPNASFIGFTGTPLELDDRNTRSVFGDYISIYDIQRAVLDGATV  409
                    G+A+ +RDALPNA+F+GFTGTP+   D+NT+ VFG+YI +YD+ +AV DG+TV
Sbjct  427   KGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTV  486

Query  410   PIYYESRLAKLDLPEELKPKvdeefeevteseeverkeRLKTKWAQLEAVVGAEKRLRLV  469
              IYYESR+  L+LP+ L   +DE ++++TE +E + K+RLK+KW+++EA+ GA  R+  +
Sbjct  487   KIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEAL  544

Query  470   AQDIVTHFEQRLEALDGKAMIVCMSRRICVELYNEIVRLRPAWHNDGDDKGVIKVVMTGS  529
             A+DI+ HFE R +A+ GK+MIV MSRRI V+LY+EI+RL+P WH+D+DDKGVIKVVMTGS
Sbjct  545   AKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGS  604

Query  530   ASDPVEWQSHIRNKQRREFLAKKRFRDPADPFKLVIVRDMWLTGFDCPSLHTMYLDKPMR  589
             +SDP   Q HI  K+RR  L K R +D  D ++LVIVRDMWLTGFD PS+HTMY+DKPM+
Sbjct  605   SSDPTSFQRHIGPKKRRSVLEK-RMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMK  663

Query  590   AHGLMQAIARVNRVFRDKPGGLVVDYLGLAHELKAALATYTESGGTGRTAIDQSEAVAVM  649
             +H LMQAIARVNRVF+DKPGGL+VDY+G+A+ LK AL  YTES+  ++TAID   AV +M
Sbjct  664   GHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESD-QAQTAIDTDKAVELM  722

Query  650   EEKYEICRNLFHGFDWSLWKTGRPEERLALLPAAQEHILA-QENGKERLLQAVSELSRAF  708
               KY++ ++++  +D S  ++ +  ER   ++ + + +++  E+ ++R++++V+EL++AF
Sbjct  723   LLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAF  782

Query  709   ALALPHEKALAIRDDVAFFQAVRAALAK-----RASSEERTEEDLDHAIRQIVSRALMPE  763
             AL   +  A  + D++AFF+AV+A+L K     + +   +T  +++  I Q+VS++++ E
Sbjct  783   ALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTE  842

Query  764   GVVDLFAAAGLKKPDISILSEEFLAEVRGMPQRNLAVELLRKLLEGEIKTRRKKNVVQAR  823
             +V+D++ + GL +PD+SILS++FL +V G+ Q+N+AVELL +LL G++K+  K N   ++
Sbjct  843   DVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSK  902

Query  824   SFAEMLEQAIRRYQNRAVEAAQVIEELIALAREMREADRRGQALGLSEEELAFYDALETN  883
              F+EML ++I +Y++R++E+++VIEELI LA+++++ ++RG+ LGL+ +E+AFYDAL ++
Sbjct  903   RFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSH  962

Query  884   DSAVKVLGEPTLREIARELVDTVRRNVTIDWTERENVRAHlrrlvkrvlrkYGYPPDKQE  943
             ++A K + +  LR IA+EL  TV+ N+++DW+ R++ +A +R  V+R+L+KYGYPPD Q 
Sbjct  963   ETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQK  1022

Query  944   RATQTVLEQAEVLSEQ  959
              A + V+EQAE+++ +
Sbjct  1023  MAVEQVVEQAELMASN  1038

100) VFMJ11_B0055 in NC_011185


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  800 bits (3028),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 487/1045 (47%), Positives = 760/1045 (73%), Gaps = 29/1045 (2%)

Query  2     KITEEMLEDHCMVWFSNLGYQTLHGGDLEPTGKAPERQSLSDVVLKPRLKKSLMKINPHL  61
             ++ E+ LE+  + W+ +L+Y+   G ++  TG APER+S  DVVL  RL K+L KIN+++
Sbjct  4     QFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDI  63

Query  62    PEDCIDTAIDTL-LTTVPSVAHANHTFHRQLIDGIQVE-YEDSEGRPKGDKVYLVDFTN-  118
                 I+ AI+ L L   P++ + N TFH +LI+GI++E Y+D EG++  + V +VDF + 
Sbjct  64    HPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDD-EGQSIVEIVKIVDFEHP  122

Query  119   QNNDWLALRQFSVDGVTNGEKDNRRPDIVVFLNGLPISVLELKSPADEKADVWKAYNQIQ  178
             QNND LA+ QF+V    NG+   +RPDIV+F+NGLPI V+ELK++++E  +V  +Y+Q++
Sbjct  123   QNNDFLAVNQFTV---VNGD-YTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLE  178

Query  179   TYKNVLRDLFVFNESVIISDGTEAYIGSLTADRDRFTPWRTIDGSRDDSEDTLALEVMVR  238
             TYK  + +LF FNE ++ SDG ++  GSLTA+ DRF  WR+ DG  + S    +L+V++ 
Sbjct  179   TYKMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLIN  238

Query  239   GFFNQELLLDYLQYFISFECDNEKVIKKI-AGYHQFHGVRAAIESTIRATRHDGDQRCGV  297
             G +N   LLD ++YF+ F+ D    I KI A+YHQ+ +V  A++ ++ A+  +GD + GV
Sbjct  239   GMLNPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGV  298

Query  298   FWHTQGSGKSLSMGFYSAKLMAAPEMRNPTIVVVTDRNDLDEQLFETF-----SINAELL  352
             +WHTQGSGKSL+M F+S+KL+    + NPT+V+VTDRNDLD+QL+ TF          LL
Sbjct  299   IWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLL  356

Query  353   RETPIQAKDRHHLKELLDNRQSGGIFFTTMQKFSPDEGESRYPALTERNNIVVMADEAHR  412
             R+TP QA  R +LK LL   +SGGI FTTMQKF P++ E+  +ALTER+N++VMADEAHR
Sbjct  357   RQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHR  415

Query  413   SQYGLKARVDSKTGEMKYGYAQHLRDALPNAGFIGFTGTPVEMEDRDTRVVFGQDVSVYD  472
             +QYG++A+ D K   +KYGYA+ LRDALPNA F+GFTGTPV   D++T++VFG+ + VYD
Sbjct  416   TQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYD  475

Query  473   IEQAQRDGATKKLYYESRLIKLDMDKSIKEEDLDQAVDDLVAEYDEDDQSRTKAKNAALE  532
             + QA  DG+T K+YYESR+I L++ +S+   DLD+A +D+  + +ED + R K+K + +E
Sbjct  476   MTQAVADGSTVKIYYESRVIPLNLPQSL---DLDEAYNDITEDQEEDVKQRLKSKWSRIE  532

Query  533   ALVCAEDRIDRLARDLLTHFGKREEVTLTKAMAVCISREACVQLYDKLRELKPEWHDEDP  592
             AL  A  R++ LA+D++ HF  R++    K+M V +SR   V+LYD +  LKPEWH +D 
Sbjct  533   ALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDD  592

Query  593   EKGCMKVIMTGTSSDPEkyqkhihkkpiqkkiakrikDPDSELKLVIVCDMWLTGFDAPC  652
             +KG +KV+MTG+SSDP  +Q+HI  K  +  + KR+KD + EL+LVIV DMWLTGFD P 
Sbjct  593   DKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPS  652

Query  653   LNTMYIDKPLKGHNLMQAIARVNRVFRDKEGGLIVDYLGIAPELRSAVRNYTASGQGEPT  712
             ++TMYIDKP+KGHNLMQAIARVNRVF+DK GGLIVDY+GIA  L+ A+++YT S+Q++ +
Sbjct  653   MHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTA  712

Query  713   IDLAQALEVTMTKLDVCRGIMHGFDYSDYKTNTLG----LLAKAMNHILSL-EDGKKRFD  767
             ID  +A+E+ + K DV ++++  +DYS ++++  +     ++++M+ +++L ED ++RF 
Sbjct  713   IDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFI  772

Query  768   KAALSLSKAFSLCSCMDEAKDIKEEIAFFETLRAAIKK----TTTSKQRMSDENVQTALR  823
             K+   L+KAF+LC+    A+++++EIAFF +++A++ K       +K R +  +V++ + 
Sbjct  773   KTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEIN  832

Query  824   QVVSESIVSGDIVDVFESAGLNKPNISILDDDFLAEVEKIEHKNLAVEMLKKLIQDEIKT  883
             Q+VS+S+V+ D++DV+++ GL++P++SIL DDFL +VE + +KN+AVE+L++L+++++K+
Sbjct  833   QLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKS  892

Query  884   RTVKNAVAYKTFSEMLRNSLDKYRNRSVETSVVIEELIKLAKELRDSADRGDDLDLTKEE  943
                 NA   K FSEML NS++KY +RS+ETS VIEELI+LAK++++  +RG++L+L  +E
Sbjct  893   LMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDE  952

Query  944   LAFFDALLANESAKEAMKQEDILFIARELAAEIRKSAQPDWTKRKNLRSRMRIKIKQILK  1003
             +AF+DAL+++E+AK AM +  +  IA+EL+  ++ +   DW+KR + +++MR+ ++++LK
Sbjct  953   IAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLK  1012

Query  1004  RTGYPPDCQEDAVELVLQQAELVNP  1028
             + GYPPD Q  AVE V++QAEL+ +
Sbjct  1013  KYGYPPDLQKMAVEQVVEQAELMAS  1037

101) EcE24377A_0289 in NC_009801


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  800 bits (3030),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 485/1056 (46%), Positives = 759/1056 (72%), Gaps = 38/1056 (3%)

Query  2     LSEDDLEQQSLQWFAELGWEVLHGPDIAPDGNNPLRASFHDVFLRPVLLEQLQKINPHLP  61
             ++EDDLEQ  L+W+  L+ +   G +I+  G  P R S  DV L+  L   L+KIN+++ 
Sbjct  5     FNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIH  64

Query  62    VAVLDEVILRIAHAQSPDLVVSNKAFHHLLLDGVPVQ-YKQDDKVIHDKALLMDFNHPNN  120
                ++  I  ++  +SP+L+ +N +FH+ L++G+ ++ Y ++++ I +   ++DF+HP+N
Sbjct  65    PRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQN  124

Query  121   NHFTVVNQVAIQGTKQVRRPDVICYINGLPVVVIELKSPIDANADIWAAFNQLQTYKNEL  180
             N+F  VNQ ++      +RPD++ +INGLP+VVIELK++ +   ++  +++QL+TYK  +
Sbjct  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  181   SDLFICNEALVVSDGYNARIGSLTANEERFLPWKTLSNEDDKPLFEWQLETVVKGFFNRE  240
             ++LF  NE LV SDG N++ GSLTAN +RF+ W++   E + +     L+ +++G +N  
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPK  244

Query  241   LLLDYIRYFILFESDGKRLIKKI-AAYHQFHAVREAVTATIVASTGKHLPLRSNITPGSK  299
              LLD IRYF+LF+ DGK  I KI AAYHQ+ AV  AV  +++AS+G           G  
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSG----------QGDG  294

Query  300   KAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYATFCQ-----A  354
             K+GV+WHTQGSGKS++M  ++GKL+Q   +NNPT+V+VTDRNDLD QLY+TF +     +
Sbjct  295   KGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSG  352

Query  355   QDLLKQEPLQANDRDQLREMLNVRESGGIIFTTVQKFAPLDGEQTHPALNLRSNIVVISD  414
             ++LL+Q P QA+ R +L+ +L+V ESGGI+FTT+QKF P + E   +AL  R N++V++D
Sbjct  353   KGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMAD  411

Query  415   EAHRSQYGLSATLNRETGAYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYV  474
             EAHR+QYG++A  +    + KYGYAK +RDALPNA+F+GFTGTPV+S DK+T+ VFG+Y+
Sbjct  412   EAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYI  471

Query  475   SIYDIQDAVEDGATVPIYYESRLAKLDLNHEELETLSNQVDELVedeetdqkektkSDWS  534
              +YD+ +AV DG+TV IYYESR+  L+L +  L+ L +  +++ ED+E D K++ KS WS
Sbjct  472   DVYDMTQAVADGSTVKIYYESRVIPLNLPQS-LD-LDEAYNDITEDQEEDVKQRLKSKWS  529

Query  535   RLEKLVGSEPRINEVAADLVQHFEARNATMNGKAMIVAMSREICVKLYDALVALRPEWHS  594
             R+E L G+ PR++ +A D++QHFE+R+ +M+GK+MIV+MSR I V LYD ++ L+PEWHS
Sbjct  530   RIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHS  589

Query  595   DDVEKGEIKIIMTGSASDNKFLQPHIYNKQTKKRLEARFKDLNDPLKLVIVRDMWLTGFD  654
             DD +KG IK++MTGS+SD   +Q HI  K+ +  LE R KD+ND L+LVIVRDMWLTGFD
Sbjct  590   DDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFD  649

Query  655   APCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGK  714
              P  HTMYIDKPM+GHNLMQAIARVNRVFKDKPGGL+VDY+GIA+ LK+ALK YT+S ++
Sbjct  650   VPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQ  708

Query  715   GQTTVDAHEAFSILLEKLDVIHGMFAKTPTAAGFDYTGFAEV--PQRF--LLKAADYVLG  770
             +QT++D++ A  ++L K DVI++M+ +      +DY+ F     ++R+  + ++ DYV+G
Sbjct  709   AQTAIDTDKAVELMLLKYDVIQDMLYN------LDYSKFNSEKKSERYYTISNTMDYVIG  762

Query  771   L-DDGKKRFFDVVLAMNKAWSLCSTLDEAKPLQKEIAFLSAVKVAIIKLTTTDK----KF  825
             L +D ++RF+  V  + KA +LC+T   A+ L+ EIAF+ AVK +++KL    K    + 
Sbjct  763   LGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRK  822

Query  826   SQSEKNTLLGKILDNAIIATGVDDVFALAGLDKPNIGLLSDEFLEEVRELPQRNLAVELL  885
             + +E ++ + +++ +++++ +V DV+   GL++P++++LSD+FL +V  L Q+N+AVELL
Sbjct  823   TPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELL  882

Query  886   EKLLNDGIHARTKNNVVQEKKYSDRLKAVLLKYNNRAIETAQVIEELIQMAKEFQEAMAR  945
             ++LL++ + +  K N    K++S+ L   + KYN+R+IET++VIEELIQ+AK++++   R
Sbjct  883   NRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQR  942

Query  946   DEALGLNPDEIAFYDALAENESAVRELGDDVLKKLAIEVTLKLRQSTTVDWQVRESVRAR  1005
             ++ LGLN+DEIAFYDAL  +E+A + + D  L+ +A E+T  ++++ +VDW  R+S +A+
Sbjct  943   GNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAK  1002

Query  1006  LRILVRQTLRKYKYPPDKTPYAVELILKQAEVVSNS  1041
             +R+ VR+ L+KY YPPD    AVE ++ QAE+++++
Sbjct  1003  MRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

102) PCC21_032460 in NC_018525


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  800 bits (3030),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 477/1056 (46%), Positives = 747/1056 (71%), Gaps = 39/1056 (3%)

Query  2     LSEDDLEQQCLKWFAEQDWEVLHGPDIAPDGDNPLRASFHDVFLRPVMLEQLQAINPHLP  61
             ++EDDLEQ  L W+     +   G +I+  G  P R S  DV L+  +   L+ IN+++ 
Sbjct  5     FNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIH  64

Query  62    VSVLEEVILRITRPESPDLVVSNKAFHHLLLDGVPVE-YKREDKTVHDKALLMDFNHTDN  120
                +E  I  +T   SP+L+ +N +FH+ L++G+ +E Y  E++++ +   ++DF+H +N
Sbjct  65    PRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQN  124

Query  121   NRFMVVNQVAIQGTKQVRRPDVIGYINGLPVVVIELKSPIDANADIWAAFNQLQTYKNEL  180
             N F+ VNQ ++      +RPD++ +INGLP+VVIELK++ +   ++  +++QL+TYK  +
Sbjct  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  181   SDLFICNEALVVSDGQNARIGSLTADEERFLPWKTVANEDDKPQFDWQLKTVVQGFFNRE  240
             ++LF  NE LV SDG N++ GSLTA+ +RF+ W++   E + +     L  +++G +N  
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPK  244

Query  241   LLLDYIRYFVLFEYDGKRLIKKI-AAYHQFHAVREAVAATIVASTGKHLPLRSNITPGSK  299
              LLD IRYFVLF+ DGK  I KI AAYHQ+ AV  AV  +++AS+G           G  
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSG----------QGDG  294

Query  300   KAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYATFCQ-----A  354
             K+GV+WHTQGSGKS++M  ++GKL+Q   +NNPT+V+VTDRNDLD QLY+TF +     +
Sbjct  295   KGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSG  352

Query  355   QGLLKQTPLQANDRDELRELLNARESGGIIFTTVQKFAPLDSEQSHPALNLRSNIVVISD  414
             +GLL+QTP QA+ R EL+ LL+  ESGGI+FTT+QKF P ++E   +AL  R N++V++D
Sbjct  353   KGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMAD  411

Query  415   EAHRSQYGLSATLDRETGVYKYGYAKHMRDALPNASFMGFTGTPIASEDKDTRAVFGDYV  474
             EAHR+QYG++A  D      KYGYAK +RDALPNA+F+GFTGTP+AS DK+T+ VFG+Y+
Sbjct  412   EAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYI  471

Query  475   SIYDIQDAVDDGATVPIYYESRLAKLDLNYEELETLSDQVDELVEDEETGQQEKTKGDWS  534
              +YD+ +AV DG+TV IYYESR+  L+L  + L+ L +  +++ ED+E + +++ K+ WS
Sbjct  472   DVYDMTQAVADGSTVKIYYESRVIPLNLP-QSLD-LDEAYNDITEDQEEDVKQRLKSKWS  529

Query  535   RLEKLVGSEPRIKQVAADLVQHFETRNAAMNGKAMVVAMSRDICVKLYNAIVAIRPDWHS  594
             R+E L G+ PR+  +A D++QHFETR+ AM+GK+M+V+MSR I V LY+ I+ ++P+WHS
Sbjct  530   RIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHS  589

Query  595   TDVEQGAIKVIMTGSASDKDHLQAHIYNKQTKKRLETRFKDLNDPLKLVIVRDMWLTGFD  654
              D ++G IKV+MTGS+SD   +Q HI  K+ +  LE R KD+ND L+LVIVRDMWLTGFD
Sbjct  590   DDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFD  649

Query  655   APCCHTMYIDKPMRGHNLMQAIARVNRVFRDKPGGLVVDYIGIANELKQALKTYTDSKGK  714
              P  HTMYIDKPM+GHNLMQAIARVNRVF+DKPGGL+VDY+GIA+ LK+ALK YT+S ++
Sbjct  650   VPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQ  708

Query  715   GQTTVDAREAFAVLLEKIDIIHGMFASLAGKSGFSYEGFSRDPLA----FLRDAVNYILG  770
             +QT++D+  A  ++L K D+I++M+ +L       Y  F+ +  +     + ++++Y++G
Sbjct  709   AQTAIDTDKAVELMLLKYDVIQDMLYNL------DYSKFNSEKKSERYYTISNTMDYVIG  762

Query  771   L-DDGKKRYLDVSLAMSKAWSLCNTLDEAEPLQEEFAFLSAVRVGLIKL-----DPKAKF  824
             L +D ++R++     ++KA +LC T   A+ L++E+AF+ AV+ GL+KL     + K++ 
Sbjct  763   LGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRK  822

Query  825   GQSEKNSLLSKILDNAVVATGVEDVFALAGLDKPNIGLLSDEFLEEVREMPQRNLAVELL  884
               +E ++ +++++ ++VV+ +V DV+   GL++P++++LSD+FL +V  + Q+N+AVELL
Sbjct  823   TPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELL  882

Query  885   EKLLNDGIHARSGNNVVQQKKYSDRLKAVLLKYNNRAIETAQVIEELIQMAKAFQEAMAR  944
             ++LL++ + +    N    K++S+ L   + KYN+R+IET++VIEELIQ+AK +++   R
Sbjct  883   NRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQR  942

Query  945   DDALGLNPDEIAFYDALAENESAVRELGDETLRKLAIEVTRQLRKSTTVDWQVRESVRAR  1004
             ++ LGLN+DEIAFYDAL  +E+A + + D  LR +A E+T+ ++ + +VDW  R+S +A+
Sbjct  943   GNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAK  1002

Query  1005  LRILVRQTLRKYKYPPDKTAGAVELILKQAEVVSNS  1040
             +R+ VR+ L+KY YPPD    AVE ++ QAE+++++
Sbjct  1003  MRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

103) PT7_2213 in NC_015458


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  800 bits (3027),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 495/1088 (46%), Positives = 760/1088 (70%), Gaps = 73/1088 (6%)

Query  2     TEDQLEQEALGWLADVGYTPRSGPDIAHDGSDPQRSGYTQVTLPQRLRDTIARLNPDIPA  61
              ED+LEQ  L WL  ++Y  + G +I+  G  P+R +  +V L +RL  ++ ++N+DI +
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62    IARDEALKQVENLDTPVQLAANCAFHKLMVNGVPVQ-YQKDGETRGDLVRLVDWANPKNN  120
                + A+ ++    +P  L  N +FH  ++NG+ ++ Y+ +G++  ++V++VD  +P+NN
Sbjct  66    RFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNN  125

Query  121   EFWAVSQFTIKGPHHTRRPDIILFINGLPLVLLELKNAVNEGADIWKAYDQLQTYKAQIP  180
             +F AV+QFT+   + T+RPDI+LFINGLP+V++ELKN+ NE  ++  +Y+QL+TYK +IP
Sbjct  126   DFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  181   DIFEYNEILVISDGSEARFGSLSANAERFMQWRTIDGVELDPLGQFNELETLVRGLLAPQ  240
             ++F +NE+LV SDG +++ GSL+AN +RFM WR+ DG E ++ + +  L+ L+ G+L P+
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDG-ETESSSSLASLDVLINGMLNPK  244

Query  241   YLLDYLRYFVLFEDDGT--LIKKIAGYHQYHAVRFAIEEVVRVSRPDvekgkrgkggvvW  298
              LLD +RYFVLF+DDG   + K +A+YHQY AV  A++  +  S  + +          W
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVI----W  300

Query  299   HTQGSGKSITMTCFAARVMQEPAMQNPTIVVITDRNDLDGQLFGVF-----SLSQDLLRE  353
             HTQGSGKS+TM  F+++++Q   ++NPT+V++TDRNDLD QL++ F       +++LLR+
Sbjct  301   HTQGSGKSLTMVFFSGKLIQ--MLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQ  358

Query  354   QPVQATTRQQLRALLGNRPSGGIVFATIQKFMPGEDEDIFPELSDRSNIVVIADEAHRTQ  413
              P QA TR++L++LL+   SGGIVF+T+QKF P ++E I + L++R N++V+ADEAHRTQ
Sbjct  359   TPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQ  417

Query  414   YSFEAKLKTRKNKAGNLATAYHLAPDNEPSTAFATELAGSEDYLSKYQTGYAQHLRDALP  473
             Y+F+AK     +K+  +                            KY  GYA+ LRDALP
Sbjct  418   YGFNAKYD---DKGEGI----------------------------KY--GYAKYLRDALP  444

Query  474   NATFVAFTGTPVSSTDRDTRSVFGNYIHVYDMQQAKEDGATVAIYYESRLAKLKLKETdl  533
             NATFV+FTGTPV+STD++T+ VFGNYI+VYDM QA  DG+TV IYYESR+  L+L ++  
Sbjct  445   NATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSLD  504

Query  534   eaideevdelaedeeeQTQARLKSKWAALEKVVGAEPRVASVAADLVEHFEERNKAQDGK  593
                  +     ++E  + + RLKSKW+ +E + GA PRV ++A D+++HFE R++A  GK
Sbjct  505   LDEAYNDITEDQEE--DVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGK  562

Query  594   AMAVGMSRDICVHLYNEIIKLRPDWHDEDPEQGTIKVIMTGSASDKALLRPHIYSGQVKK  653
             +M V MSR I V+LY+EII+L+P+WH +D ++G IKV+MTGS+SD + ++ HI  G  K+
Sbjct  563   GMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHI--GPKKR  620

Query  654   R--LEKRFKDPADPLKMVIVRDMWLTGFDAPCVHTMYIDKPMKGHNLMQAIARVNRVFRD  711
             R  LEKR KD  D L++VIVRDMWLTGFD P +HTMYIDKPMKGHNLMQAIARVNRVF+D
Sbjct  621   RSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKD  680

Query  712   KQGGLVVDYIGIGNELKAAMKEYTASKGRGKPTVDAYEALAVMLEKLDVLRAMLHGYDYS  771
             K GGL+VDY+GI++ LK A+KEYT S ++++ ++D+  A+ +ML K DV++ ML   DYS
Sbjct  681   KPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYS  739

Query  772   GFKTGGHK----ALAGAANHILSLRPPPGQKDAKLDGKKRFADAALALSKAFSLCCTLDE  827
              F++        +++ + + +++L    G+     D ++RF  +   L+KAF+LC T   
Sbjct  740   KFNSEKKSERYYTISNTMDYVIGL----GE-----DERQRFIKTVTELGKAFALCATEPT  790

Query  828   AKTLRDEVAFMQAVKVILTK----RDISAQKKTDEQREIAIRQIINQAVVSESVVDIFDA  883
             A+ L DE+AF +AVK  L K       +  +KT  + E  I Q+++Q+VV+E V+D++++
Sbjct  791   AQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQT  850

Query  884   VGLEKPNIGLLDDEFLAQVRNLPERNLAVELLERLLEGEIKSKFASNLVQQKKFSEMLSG  943
             +GLE+P++++L D+FL +V  L ++N+AVELL+RLL G++KS   +N    K+FSEML+ 
Sbjct  851   LGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGN  910

Query  944   VITRYQNRSIETAQVMEELVEMAKKFKEAVSRGEELGLSEDEIRFYDALATNESAVRELT  1003
              I +Y++RSIET++V+EEL+++AK +K+   RG+ELGL+ DEI FYDAL ++E+A + + 
Sbjct  911   SINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAME  970

Query  1004  DETLKKIAHELTENLRKNITVDWSKresvraslrllvrrilrKYKYPPDMADTAVELVLQ  1063
             D  L+ IAHELT  ++ N++VDWSKR+S +A +R+ VRR+L+KY YPPD+   AVE V++
Sbjct  971   DKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVE  1030

Query  1064  QAEVLGEQ  1071
             QAE+++ +
Sbjct  1031  QAELMASN  1038

104) Rhom172_1461 in NC_015966


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  800 bits (3030),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 492/1083 (46%), Positives = 774/1083 (72%), Gaps = 74/1083 (6%)

Query  8     EEDVEQMALDELQALGWQTAYGPDLAPESLRPERETYGDVVLKGRLREALERINPDRPAV  67
             E+D+EQ+ L+ L++L+ +   G +++  +L PER +  DVVL  RL  AL +IN+D  + 
Sbjct  7     EDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHPR  66

Query  68    AIEEALRQVLTPESPALIENNRRFHQMLTDGVDV-SWMGPERQQNGKVSLIDIQNLDNND  126
              IE A++++    SP L+ENN  FH+ L +G+++    +  +     V ++D+++ +NND
Sbjct  67    FIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNND  126

Query  127   WLAVNQFTVIENKHERRPDIVLFVNGLPLVVIELKDPGTVQATLRAAFNQLQTYKQEIPS  186
              LAVNQFTV++    +RPDIVLF+NGLP+VVIELK++      +  +++QL+TYK  IP 
Sbjct  127   FLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQ  186

Query  187   LFTYNEILVISDGMQARFGTLTSGWDRFMPWRTIDGTDLYREPGNDKQSEGVVQPGMKTL  246
             LFT+NE+LV SDG++++ G+LT+  DRFM WR+ DG         + +S + + +++  L
Sbjct  187   LFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDG---------ETESSSSL-ASLDVL  236

Query  247   IRGMFERRRFLDYVLNFITFEQVDEGTAGIAKKAAGYHQYHAVNQALASTLVACGIEADA  306
             I GM++ + +LD +  F+ F+  D+G + I+K  A+YHQY AVN+A+  +L+A + ++D+
Sbjct  237   INGMLNPKTLLDLIRYFVLFQ--DDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDG  294

Query  307   STLYARFQEAEAADPFAVREPKAEYRPKLGDRRVGVIWHTQGSGKSLSMVFYAGKVIRHP  366
                                             + GVIWHTQGSGKSL+MVF++GK+I+  
Sbjct  295   --------------------------------KGGVIWHTQGSGKSLTMVFFSGKLIQ--  320

Query  367   AMQNPTIVVITDRNDLDNQLFATFA-----ANRQILRQTPVQAESRGHLRELLKVAAGGV  421
              ++NPT+V++TDRNDLDNQL++TF      + + +LRQTP QAE+R +L+ LL V +GG+
Sbjct  321   MLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGI  380

Query  422   IFTTIQKFFPEKKGDTYPTLSERHNIVVIADEAHRSQYDFID-----------GFARHMR  470
             +FTT+QKF PE++    ++L+ER N++V+ADEAHR+QY+F             G+A+ +R
Sbjct  381   VFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLR  440

Query  471   DALPNASFIGFTGTPIEKDDRNTRAVFGDYISIYDIQRAVEDGATVPIYYESRLARIELD  530
             DALPNA+F+GFTGTP+   D+NT+ VFG+YI +YD+ +AV DG+TV IYYESR+  ++L 
Sbjct  441   DALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLP  500

Query  531   EAEKPRLDeafe-eiteteedevrrerLKSKWASLEALVGAEKRIRLVAKDLVEHWERRR  589
             ++    LD     +    +++E  ++RLKSKW+ +EAL GA  R+  +AKD+++H E R+
Sbjct  501   QS----LDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQ  556

Query  590   EAMLGKGMIVCMSRRICVEMYRAITALRPDWHSDDDNRGKIKVVMTGSASDPSDWQPHIR  649
             +AM GKGMIV MSRRI V++Y  I  L+P+WHSDDD++G IKVVMTGS+SDP+  Q HI 
Sbjct  557   QAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIG  616

Query  650   NKQRRDLIARRFKDPDDELELVIVRDMWLTGFDAPPLHTMYIDKPMNGHNLMQAIARVNR  709
              K+RR ++ +R KD +DEL+LVIVRDMWLTGFD P++HTMYIDKPM+GHNLMQAIARVNR
Sbjct  617   PKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNR  676

Query  710   VFRDKPGGLVVDYLGIADSLKKALAVYAESGGRGKAAIDQAEAVAVMKEKYEVVCGILHG  769
             VF+DKPGGL+VDY+GIA+SLK AL  Y+ES +++++AID   AV +M  KY+V+ ++L  
Sbjct  677   VFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYN  735

Query  770   FDYRRLLAAAPDERLQGIAEAMDFILG-REDGKKRYlqavaalskafalaVPHEEALAIR  828
             +DY ++ +    ER   I+++MD+++G  ED ++R++++V+ L+KAFAL   +  A  + 
Sbjct  736   LDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELN  795

Query  829   DEVGLFQEIRAALIK----ATVSSaerapeeveaavrQLVSRAISGCEVVDIFAAAGLEK  884
             DE+++F+ ++A+L+K    +  + + ++P EVEA + QLVS+++   +V+D++ + GLE+
Sbjct  796   DEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQ  855

Query  885   PDISILSDEFLEEVRSLPQKNLAVETLKKLLQDEIQVRLRKNVVQSRAFSELLQRALNKY  944
             PD+SILSD+FL +V +L QKN+AVE L++LL+++++  ++ N   S+ FSE+L  ++NKY
Sbjct  856   PDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKY  915

Query  945   HNRAIEAAQVIEELIAIARQVREATRRGEKLGLSEDEVAFYDALAANESAVEVLGDETLK  1004
             ++R+IE+++VIEELI +A+++++  +RG+ LGL+ DE+AFYDAL ++E+A   + D  L+
Sbjct  916   NSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLR  975

Query  1005  EIAQVLVESVRKSVTVDWNRRESARAQLRVLVKRILRKYGYPPDKQEQAVELVLSQTEVL  1064
              IA+ L  +V+ +++VDW++R+SA+A++RV V+R+L+KYGYPPD Q  AVE V+ Q+E++
Sbjct  976   AIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELM  1035

Query  1065  CGE  1067
              ++
Sbjct  1036  ASN  1038

105) PGA2_c07320 in NC_018286


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  797 bits (3018),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 479/1052 (46%), Positives = 739/1052 (71%), Gaps = 34/1052 (3%)

Query  3     INEDLVEQAVLALMQELGW--RLEDPMAIVPDGPQRRRGAYGEVVLPELLEDVARRLNPG  60
             +NED +EQ VL  ++ L+   +  + +++   +P+R+ +   +VVL E LE   R++N++
Sbjct  5     FNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDK--DVVLHERLEKALRKINSD  62

Query  61    IPEEALRSALKQVQVSETPSLIEENRRIHRLLVDGIDVEYRRPDGSIKGDKVRLIDFANP  120
             I    +  A+ ++ +  +P+L+E+N  +H  L++GI++E    +G    + V+++DF +P
Sbjct  63    IHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHP  122

Query  121   AKNDFMVTNQFTVVESGHNRRPDIVAFVNGLPLVVVELKNAASENATIEDAFNQLQTYKQ  180
              +NDF+  NQFTVV+++  +RPDIV F+NGLP+VV+ELKN+++E   +ED+++QL+TYK 
Sbjct  123   QNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKM  182

Query  181   QIPSLFRTNAALITSDGLLARIGSLSAGEDRFMPWRTVTGAQDDFTPEGPKEMETLIRGV  240
             +IP LF  N  L+TSDG+ ++ GSL+A  DRFM WR+  G  +  ++ +   ++ LI G+
Sbjct  183   RIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETE--SSSSLASLDVLINGM  240

Query  241   LHPERLLQLVRDFTVFGDKGDG-VFKIIGGYHQFHGARKALASAIDAVSADGDRKVGVIW  299
             L+P  LL+L+R F +F D G G + KI+++YHQ+ +  KA+  A+ A S++GD K GVIW
Sbjct  241   LNPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIW  300

Query  300   HTQGSGKSFLMAFFAGLLVRAPKLQNPTILVVTDRNDLDDQLYGTFSLCRD-----LIRQ  354
             HTQGSGKS+ M FF+G L++   L+NPT+++VTDRNDLD+QLY+TF   ++     L+RQ
Sbjct  301   HTQGSGKSLTMVFFSGKLIQ--MLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQ  358

Query  355   TPEQIEDREDLRQKLDRQSGGVIFSTLQKFSPMAGEEDFPMLSDRRNIIVLADEAHRSQY  414
             TP Q E R +L+  L  +SGG++F+T+QKF P   E   + L++R+N+IV+ADEAHR+QY
Sbjct  359   TPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQY  418

Query  415   GFDAKLDRTTGARRYGYAHYLRQALPNASFAGFTGTPIEAADVNTPAVFGEYVDVYDISR  474
             GF+AK D    + +YGYA YLR+ALPNA+F GFTGTP+ ++D NT  VFG+Y+DVYD+++
Sbjct  419   GFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQ  478

Query  475   AVEDKATVPIYYESRLARVELEQDKLPEIDAAVEALFDDETLSEQEKAKSKWSSVERLVG  534
             AV D +TV IYYESR+  ++L Q    ++D A + + +D+    +++ KSKWS +E L G
Sbjct  479   AVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAG  536

Query  535   APPRLEKVAHDIVAHFEDRVEAMAGKGMIVCMSRAICVDLYNRITELRPEWHSEDDKEGV  594
             A PR+E +A DI+ HFE R +AM GKGMIV MSR I VDLY+ I  L+PEWHS+DD  GV
Sbjct  537   AKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGV  596

Query  595   VKVVMTGSASDPLDWQKHIGSKMRRDLLAKRARDPEDQLKLVIVRDMWLTGFDAPSMHTM  654
             +KVVMTGS+SDP   Q+HIG+K RR +L KR +D +D+L+LVIVRDMWLTGFD PSMHTM
Sbjct  597   IKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTM  656

Query  655   YIDKPMRGHGLMQAIARVNRVFKDKPGGLVVDYIGIGQNLKKALQNYTATDRDQTGIDEE  714
             YIDKPM+GH LMQAIARVNRVFKDKPGGL+VDY+GI+++LK AL++YT +D+ QT+ID +
Sbjct  657   YIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTD  716

Query  715   EAVATLQELVERCQDFFSGFDYQAGIVGAPQERLKALAGAIEWALEKQkaradkatdeka  774
              AV  +    +  QD +  +DY         ER  +++ +++  +       ++      
Sbjct  717   KAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQR------  770

Query  775   kkaeLNYYADLVANLSKAFALASASDYAQSVKEEVGFFQAVRAALSK--SSPKTGMSKR-  831
                    +   V++L+KAFAL ++   AQ +++E++FF+AV+A+L K   +PK G +++ 
Sbjct  771   -------FIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKT  823

Query  832   --EKEFAMGQlisdaiadasiidvlaaaGMRTPEISVLSEEFLSEIQNMEHKNLALEALR  889
               E E  + QL+S+++    +IDV  + G+  P++S+LS++FL +++ + +KN+A+E L 
Sbjct  824   PAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLN  883

Query  890   KLLAGEIKARGQRNVVEAKAFSERLEAAVARYHANAITSLEMIQELIDMAKDMKASVQRg  949
             +LL G++K+  + N   +K FSE L  ++ +Y++ +I +  +I+ELI++AKD+K   QRG
Sbjct  884   RLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRG  943

Query  950   edlglgeeelAFYDALAQNQSAVEMLGNEELRKIAHVLVEQLQQNVTVDWHLKESARAKL  1009
             ++LGL  +E+AFYDAL  +++A   + +  LR IAH L   +++N++VDW  ++SA+AK+
Sbjct  944   NELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKM  1003

Query  1010  RVLVRRILKKFGYPPDLAPVAINTVLSQAETL  1041
             RV VRR+LKK+GYPPDL  +A++ V+ QAE +
Sbjct  1004  RVAVRRLLKKYGYPPDLQKMAVEQVVEQAELM  1035

106) CSSP291_03040 in NC_020260


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  797 bits (3017),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 470/1056 (45%), Positives = 748/1056 (71%), Gaps = 39/1056 (3%)

Query  2     LSEDDLEQQCLKWFAEQGWEVLHGPNIAPDGDNPLRASFHDVFLRPVMLEQLQSINPHLP  61
             ++EDDLEQ  L W+   + +   G +I+  G  P R S  DV L+  +   L+ IN+++ 
Sbjct  5     FNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIH  64

Query  62    VAVLEEVILRVAHAQSPDLVVSNKAFHHLLLDGVPVE-YKREDKVVHDKALLMDFNHPAS  120
                +E  I  ++  +SP+L+ +N +FH+ L++G+ +E Y  E++ + +   ++DF+HP +
Sbjct  65    PRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQN  124

Query  121   NRFMVVNQVAIQGTKQVRRPDVIGYINGLPVAVIELKSPIDANADIWAAFNQLQTYKNEL  180
             N F+ VNQ ++      +RPD++ +INGLP+ VIELK++ +   ++  +++QL+TYK  +
Sbjct  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  181   SDLFICNEALVISDGQNARIGSLTADEERFLPWKTISNEDDKPQFDWQLKTVVQGFFNRE  240
             ++LF  NE LV SDG N++ GSLTA+ +RF+ W++   E + +     L  +++G +N  
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPK  244

Query  241   LLLDYIRYFVLFENDGKRLIKKI-AAYHQFHAVREAVAATIVASTGKHLPLRSNITPGSK  299
              LLD IRYFVLF++DGK  I KI AAYHQ+ AV  AV  +++AS+G           G  
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSG----------QGDG  294

Query  300   KAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYATFCQ-----A  354
             K+GV+WHTQGSGKS++M  ++GKL+Q   +NNPT+V+VTDRNDLD QLY+TF +     +
Sbjct  295   KGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSG  352

Query  355   QDLLKQTPLQANDRDELRELLNARESGGIIFTTVQKFAPRDSEQSHPALNTRSNIVVISD  414
             ++LL+QTP QA+ R EL+ LL+  ESGGI+FTT+QKF P ++E   +AL  R N++V++D
Sbjct  353   KGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMAD  411

Query  415   EAHRSQYGLSATLDRETGLYKYGYAKHMRDALPNASFMGFTGTPIASEDKDTRAVFGDYV  474
             EAHR+QYG++A  D      KYGYAK +RDALPNA+F+GFTGTP+AS DK+T+ VFG+Y+
Sbjct  412   EAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYI  471

Query  475   SIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSEQVDELVEDEETGQQEKTKGDWS  534
              +YD+ +AV DG+TV IYYESR+  L+L +  L+ L E  +++ ED+E + +++ K+ WS
Sbjct  472   DVYDMTQAVADGSTVKIYYESRVIPLNLPQS-LD-LDEAYNDITEDQEEDVKQRLKSKWS  529

Query  535   RLEKLVGSAPRIQQVAADLVQHFEMRNAAMTGKAMIVAMSRDICVKLYDAIVAIRPDWHS  594
             R+E L G+ PR++ +A D++QHFE R+ AM GK+MIV+MSR I V LYD I+ ++P+WHS
Sbjct  530   RIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHS  589

Query  595   EDVEKGAIKVIMTGSASDNNVLQPHIYNKQTKKRLESRFKDLNDPLKLVIVRDMWLTGFD  654
             +D +KG IKV+MTGS+SD   +Q HI  K+ +  LE R KD+ND L+LVIVRDMWLTGFD
Sbjct  590   DDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFD  649

Query  655   APCCHTMYIDKPMRGHNLMQAIARVNRVFRDKPGGLVVDYIGIANELKQALKTYTDSKGK  714
              P  HTMYIDKPM+GHNLMQAIARVNRVF+DKPGGL+VDY+GIA+ LK+ALK YT+S ++
Sbjct  650   VPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQ  708

Query  715   GQTTVDAREAFAVLLEKFDIIHGMFSPSAGKPGFKYEGFSRDPLA--F--LRDAVNYILG  770
             +QT++D+  A  ++L K+D+I++M+        + Y  F+ +  +  +  + ++++Y++G
Sbjct  709   AQTAIDTDKAVELMLLKYDVIQDMLY------NLDYSKFNSEKKSERYYTISNTMDYVIG  762

Query  771   L-DEGKKRYLDVSLAMTKAWSLCNTLDEAKPLQEEFAFLSAIRVALLKLNPAAKFSQSEK  829
             L ++ ++R++     + KA +LC T   A+ L++E+AF+ A++ +L+KL  ++K +++ K
Sbjct  763   LGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRK  822

Query  830   NSL-----LSKILDNAVVATGVEDLFALIGLDKPNIGLLSDEFLEEVREMPQRNLAVELL  884
              +      +++++ ++VV+ +V D++  +GL++P++++LSD+FL +V  + Q+N+AVELL
Sbjct  823   TPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELL  882

Query  885   EKLLNDGIHARSGNNVVQQKKYSDRLKAVLLKYNNRAIETAQVIEELIAMAKSFQEAMAR  944
             ++LL++ + +    N    K++S+ L   + KYN+R+IET++VIEELI +AK +++   R
Sbjct  883   NRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQR  942

Query  945   DEALGLNPDEIAFYDALAENESAVRELGDDVLKKLAVEVTLKLRQSTTVDWQVRESVRAR  1004
             ++ LGLN+DEIAFYDAL  +E+A + + D  L+ +A E+T  ++++ +VDW  R+S +A+
Sbjct  943   GNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAK  1002

Query  1005  LRILVRQTLRKYKYPPDKTLHAVELILKQAEVVSNS  1040
             +R+ VR+ L+KY YPPD    AVE ++ QAE+++++
Sbjct  1003  MRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

107) PSTAB_3393 in NC_015740


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  793 bits (3001),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 485/1029 (48%), Positives = 748/1029 (73%), Gaps = 33/1029 (3%)

Query  2     TEDQLEQETLGWLSEVGYAHLYGPNIAYDGDNPERESYRDVLLTMRLRTAIARLNPQVPL  61
              ED+LEQ  L WL  ++Y    G +I+  G  PER S +DV+L  RL  A+ ++N+++  
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62    AAREDALRQILELGVPVQLSANRL-FHRLLVGGVPVQ-YQKDGETRGDFVRLIDWADVRA  119
                E A+++ L L  + +L  N L FH  L+ G+ ++ Y+ +G++  ++V+++D  + + 
Sbjct  66    RFIEKAIHE-LTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQN  124

Query  120   NEWLAINQFSIQGPKHTRRPDIILFVNGLPLVLLELKNPADVNADLVKAFDQLQTYKEQI  179
             N+ LA+NQF++     T+RPDI+LF+NGLP+V++ELKN+++   ++  +++QL+TYK +I
Sbjct  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  180   PDVFHYNEILVISDGSEARMGSLSADWERFARWRTIDGVTVDPLGEFNELETLVRGVLQP  239
             P++F +NE+LV SDG +++ GSL+A+ +RF  WR+ DG T ++ + +  L+ L+ G+L+P
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGET-ESSSSLASLDVLINGMLNP  243

Query  240   ATLLDYLRYFVLFEDDGR--LVKKIAGYHQFHAVRAAIQQVVSASRPGGTHKGGVVWHTQ  297
              TLLD +RYFVLF+DDG+  + K +A+YHQ+ AV  A+++ + AS   G  KGGV+WHTQ
Sbjct  244   KTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQ  303

Query  298   GSGKSITMTCFAARVMQEAAMENPTIVVITDRNDLDGQLFGVFSLSQD-----LLREQPV  352
             GSGKS+TM  F+++++Q   ++NPT+V++TDRNDLD QL++ F  S++     LLR+ P 
Sbjct  304   GSGKSLTMVFFSGKLIQ--MLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPK  361

Query  353   QVATRGDLREKLANRPSGGIVFATIQKFMPGEDEDSFPVLSARSNIVVVADEAHRTQYGF  412
             Q  TR +L+  L+   SGGIVF+T+QKF P ++E   + L+ R N++V+ADEAHRTQYGF
Sbjct  362   QAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGF  420

Query  413   SASLKVPDLKVAEASARYQVGYAQHLRDALPNATFVAFTGTPVSSEDRDTRAVFGDYIHV  472
             +A     +      + +Y  GYA+ LRDALPNATFV+FTGTPV+S D++T+ VFG+YI+V
Sbjct  421   NAKYDDKG-----EGIKY--GYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDV  473

Query  473   YDMQQAKEDGATVAIYYESRLAKLSLKDSELAHIddevdelaedeeedQQSRLKSRWAAL  532
             YDM QA  DG+TV IYYESR+  L+L +S   ++D+  ++++ED+EED + RLKS+W+ +
Sbjct  474   YDMTQAVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITEDQEEDVKQRLKSKWSRI  531

Query  533   EKVVGAEPRIKSVAADLVAHFEERNQAQSGKAMVVAMSREICVHLYNEIIALRPEWHDED  592
             E + GA PR+ ++A D++ HFE R+QA  GK+M+V+MSR I V+LY+EII L+PEWH +D
Sbjct  532   EALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDD  591

Query  593   PEKGAVKIVMTGSASDKALLRPHIYPGQVKKRLEKRFKDPADPLQLVIVRDMWLTGFDAP  652
              +KG +K+VMTGS+SD + ++ HI P + +  LEKR KD  D LQLVIVRDMWLTGFD P
Sbjct  592   DDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVP  651

Query  653   CVHTLYVDKPMKGHNLMQAIARVNRVFKDKQGGLVVDYIGIANELKAALKEYTASKGRGR  712
              +HT+Y+DKPMKGHNLMQAIARVNRVFKDK GGL+VDY+GIA+ LK ALKEYT S ++++
Sbjct  652   SMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQ  710

Query  713   PTVDAYEAYAVLEEKLDVLRSLLHGFDYSDFLTGGHK----LLAGAANHVLGL-EDGKKR  767
              ++D+  A  ++  K DV++ +L  +DYS F +         ++ + + V+GL ED ++R
Sbjct  711   TAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQR  770

Query  768   FADNALAMSKAFTLCCTLDEAKAVREEVAFLQAIKV----LLTKREISAKKKTDEERELA  823
             F      ++KAF+LC T   A+ + +E+AF++A+K     LL     +  +KT  E E  
Sbjct  771   FIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAE  830

Query  824   IRQIIGNAVVSGDVVDVFAAVGLDKPNIGLLDDEFLAEVRNLPEKNLAVELLERLLEGEI  883
             I Q+++++VV+ DV+DV+ ++GL++P++++L D+FL +V  L +KN+AVELL+RLL G++
Sbjct  831   INQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQV  890

Query  884   KSKFASNLAQEKKFSELLDSVIKRYQNRSIETAQVIEELIEMAKKFAAASKRGDQLGLND  943
             KS   +N +  K+FSE+L++ I++Y++RSIET++VIEELI++AK +    +RG++LGLN 
Sbjct  891   KSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNS  950

Query  944   DELAFYDALANNEASVRELGDEILAKIAHELTDSLRQNVTVDWSNRDSVraklrllvkri  1003
             DE+AFYDAL ++E++ + + D  L  IAHELT ++++N++VDWS+RDS +AK+R+ V+R+
Sbjct  951   DEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRL  1010

Query  1004  lrkykYPPD  1012
             L+KY YPPD
Sbjct  1011  LKKYGYPPD  1019

108) XOO_3254 in NC_007705


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  793 bits (3001),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 491/1073 (46%), Positives = 748/1073 (70%), Gaps = 52/1073 (4%)

Query  1     MAF-LSEAAVEQALLEQLRRLGYAVVSDNTTGPDGSAPERESHDVVIlrrrleeaalllN  59
             M F ++E  +EQ +LE L  L+Y    +N  +  G APER S+  V+L+ RLE A   +N
Sbjct  1     MNFQFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKIN  60

Query  60    PQLPPEAREDAIRKLTQNELPNLLEENRRIHALLTEGVDVEYYADDGVLTAGKVWLLDFD  119
             +++ P   E AI+ LT +  PNLLE+N  +H  L +G+++E Y D+G      V ++DF+
Sbjct  61    SDIHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFE  120

Query  120   RPENNDWLAVQQFVVISGQARRRPDVVLFVNGLPLAVIELKAPGSAGAHLVGAFNQLQNY  179
             +P+NND LAV+QF V++G+  +RPD+VLF+NGLP+ VIELK + +    + ++++QL+ Y
Sbjct  121   HPQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  180   KQQIPALFHTNAVLVTSDGIASRVGSLSADLERFMPWRTTDGKQVLPNGQPELPTLIEGV  239
             K +IP LF  N VLVTSDGI ++ GSL+A+ +RFM WR+ DG    +++ + L  LI+G+
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGM  240

Query  240   FAPQRFLELLRWFTAFGETGGG-LVKIIAGYHQFHAVNHAVESTIRASRSAVAEDPAKYG  298
             + P+ +L+L+R F  F + G G + KI+A+YHQ+ AVN AV+ ++ AS +          
Sbjct  241   LNPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQ---------  291

Query  299   SASVKAQPAGDRRAGVIWHTQGSGKSLLMAFYAGRLVQHPAMRNPTLVVLTDRNDLDDQL  358
                      GD ++GVIWHTQGSGKSL M F++G+L+Q   + NPTLV++TDRNDLD+QL
Sbjct  292   ---------GDGKGGVIWHTQGSGKSLTMVFFSGKLIQ--MLNNPTLVIVTDRNDLDNQL  340

Query  359   FGTFSMCKA-----LLRQTPVQADSREDLARLLDRASGGVIFTTLQKFG-----EVDAPL  408
             ++TF   K+     LLRQTP QA++R +L  LL   SGG++FTT+QKF       + A+L
Sbjct  341   YSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAAL  400

Query  409   TARRNVVVIADEAHRSQYGLKAKLDAKTGMVSYGFAKYMRDALPNASFIGFTGTPIEATD  468
             T R+NV+V+ADEAHR+QYG++AK D K   + YG+AKY+RDALPNA+F+GFTGTP+ +TD
Sbjct  401   TERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTD  460

Query  469   VNTPALFGHYIDVYDISRAVEDGATVPIYYESRLARIELDEDEKPHLDAEVEALFEWEGT  528
              NT  +FG+YIDVYD+++AV DG+TV IYYESR+  ++L +    +LD   + + E +  
Sbjct  461   KNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITEDQEE  518

Query  529   DEKEKLKGRAAAVERLVGSQKRLALVAQDLVTHFEERVAALDGKAMAVCMSREICVDLYN  588
             D K++LK++ + +E L G++ R+  +A+D++ HFE R  A+ GK+M V MSR I VDLY+
Sbjct  519   DVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYD  578

Query  589   EIVKLRPHWHSDDDTLGAVKIVMTGAASDPPQWQQHIGNkarrdalarrakdpadpLKLV  648
             EI++L+P+WHSDDD  G +K+VMTG++SDP   Q+HIG K RR  L +R KD  D L+LV
Sbjct  579   EIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLV  638

Query  649   IVRDMWLTGFDAPSMHTMYVDKPMKGHGLMQAIARVNRVFRDKPAGLIVDYIGIAQNLKS  708
             IVRDMWLTGFD PSMHTMY+DKPMKGH LMQAIARVNRVF+DKP+GLIVDY+GIA++LK 
Sbjct  639   IVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKE  698

Query  709   ALAQYSPQDKQNTGIDEAQAIAVMREKYEVVRDMYHGFDYLTALNGTPQQRLTMMAGAIE  768
             AL +Y+  D+ +T+ID  +A+ +M  KY+V++DM   +DY    +    +R   ++ +++
Sbjct  699   ALKEYTESDQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMD  758

Query  769   WILDQQQQWVaaassddgkkaaQRRYQDavlalstayalasasDEALAVREEVGFFQAIR  828
              +++  ++              ++R+  +V  L+ A+AL ++   A  + +E++FF+A++
Sbjct  759   YVIGLGED-------------ERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVK  805

Query  829   EALVK-----SATGSGINSQERDFAIRQIVSRAVVSTEIVDILKAAGIQSPDISILSDEF  883
              +LVK         +   + E +  I Q+VS++VV+ +++D+ ++ G++ PD+SILSD+F
Sbjct  806   AGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDF  865

Query  884   LAEVQRMDKKNLALEALRKLINDGIRSRSKRNIVETKAFSERLEDAIARYHANAITTAEV  943
             L +V+ + +KN+A+E L +L+++ ++S  K N   +K FSE L ++I +Y++ +I T+ V
Sbjct  866   LKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKV  925

Query  944   LQELICIAKDIRAARARGEEQGLSEDEVAFYDALAENDSAVQLMGDDALKVIAHELLVSL  1003
             ++ELI +AKDI+  + RG+E GL+ DE+AFYDAL  +++A + M D  L+ IAHEL  ++
Sbjct  926   IEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTV  985

Query  1004  KGSASVDWARRDSARARMRVLVKRILRKYGYPPDLQDAAVRTVLQQAEALSAG  1056
             K + SVDW++RDSA+A+MRV V+R+L+KYGYPPDLQ  AV  V++QAE +++ 
Sbjct  986   KENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

109) EJP617_05160 in NC_017445


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  793 bits (3003),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 465/1056 (45%), Positives = 760/1056 (72%), Gaps = 38/1056 (3%)

Query  2     LSEDDLEQLSLGWFAGQGWEVLYGPDIAPDGANPLRASFQDVFLRPVLRQQLTQINPHLP  61
             ++EDDLEQ+ L W+ + + +   G +I+  G  P R S +DV L+  L + L +IN+++ 
Sbjct  5     FNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIH  64

Query  62    DSVLDEVVSRVTRPESPDIVASNKAFHHLLLTGVPVA-YKRDDRTMHDTALLMDFNRPDN  120
                ++  +  +T   SP+++ +N +FH+ L+ G+ +  Y  +++++ +   ++DF++P+N
Sbjct  65    PRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQN  124

Query  121   NRFSVVNQVAIKGTKQVRRPDVIAYINGLPVAVIELKSPVDASADIWAAFNQLQTYKNEV  180
             N F  VNQ ++      +RPD++ +INGLP+ VIELK++ + + ++  +++QL+TYK  +
Sbjct  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  181   SDLFICNEVLVISDGYNARIGSLTADEERYLPWKTVSSEDDKPVRECQLETLINGFFNRE  240
             ++LF  NEVLV SDG N++ GSLTA+ +R++ W++  +E + +     L+ LING +N  
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPK  244

Query  241   LLLDYLRYFILFEHDGQRTMKKI-AACHQFHAVREAVSATIVAATGQFLPLRSDIKPGSK  299
              LLD +RYF+LF++DG+  + KI AA HQ+ AV  AV  +++A++GQ          G  
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQ----------GDG  294

Query  300   KAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYATFCqaqdllk  359
             K+GV+WHTQGSGKS++M  ++GKL+Q   +NNPT+V+VTDRNDLD QLY+TF ++++   
Sbjct  295   KGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSG  352

Query  360   -----qqpqqaSDREQLRAMLAARGSGGIIFTTVQKFAPLDGEQAHPALNLRDNIVVISD  414
                  Q P+QA  R +L+++L+   SGGI+FTT+QKF P + E   +AL  R N++V++D
Sbjct  353   KGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMAD  411

Query  415   EAHRSQYGLNATLDRQSGAYKFGYAKHMRDALPNAAFMGFTGTPVSAEDKDTRAVFGDYV  474
             EAHR+QYG+NA  D ++ + K+GYAK +RDALPNA+F+GFTGTPV++ DK+T+ VFG+Y+
Sbjct  412   EAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYI  471

Query  475   SIYDIQDAVDDGATVPIYYESRLAKLDLNHDELEALSSQVEELVEDEESGQKEKTKGDWS  534
              +YD+ +AV DG+TV IYYESR+  L+L +  L+ L    +++ ED+E + K++ K+ WS
Sbjct  472   DVYDMTQAVADGSTVKIYYESRVIPLNLPQS-LD-LDEAYNDITEDQEEDVKQRLKSKWS  529

Query  535   RLEKLVGSRPRIEQVAADLVRHFEARNATMDGKAMIVAMSRDICVRLYDALVDLRPQWHS  594
             R+E L G++PR+E +A D+++HFE+R+ +M GK+MIV+MSR I V LYD ++ L+P+WHS
Sbjct  530   RIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHS  589

Query  595   EDVEQGAIKIIMTGSASDKASLQPHIYNKPTKKRLEARFKDLNDPLKIVIVRDMWLTGFD  654
             +D ++G IK++MTGS+SD +S+Q HI  K  +  LE R KD+ND L++VIVRDMWLTGFD
Sbjct  590   DDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFD  649

Query  655   APCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALKTYTDSKGK  714
              P  HTMYIDKPM+GHNLMQAIARVNRVFKDKPGGL+VDY+GIA+ LK+ALK YT+S ++
Sbjct  650   VPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQ  708

Query  715   GQTTIDAREALAILLEKLDIIHGMFAKTPTDAGFDYSAFADN--PQR--VLLDAANYILG  770
             +QT+ID+  A+ ++L K D+I++M+ +      +DYS F  +  ++R   + ++ +Y++G
Sbjct  709   AQTAIDTDKAVELMLLKYDVIQDMLYN------LDYSKFNSEKKSERYYTISNTMDYVIG  762

Query  771   L-EDGKKRYFDVVLALNKALSLCSTLDEVKPLQKELAFLSAVKVAMIKL----TTTDQKF  825
             L ED ++R++  V  L KA++LC+T    + L+ E+AF+ AVK +++KL         + 
Sbjct  763   LGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRK  822

Query  826   SQSEKHSLLSRILDNAIVASGVDDVFALAGLDKPNIGLLSDEFLQEVQDMPQRNLAVELL  885
             + +E ++ +++++ +++V+ +V DV+   GL++P++++LSD+FL++V+++ Q+N+AVELL
Sbjct  823   TPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELL  882

Query  886   QKLLNDGIHARTNNNVVQEKKYSDRLKAVLLRYHNRAIETAQVIEELIQMAKDFQAAMAR  945
             ++LL++ + +  + N    K++S+ L   + +Y++R+IET++VIEELIQ+AKD++    R
Sbjct  883   NRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQR  942

Query  946   DDALGLNPDEIAFYDALAENESAVRELGDEILKKLAVEVTLKLRQSTTVDWQKRESVRAR  1005
             ++ LGLN+DEIAFYDAL  +E+A + + D  L+ +A E+T  ++++ +VDW KR+S +A+
Sbjct  943   GNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAK  1002

Query  1006  LRILVRQTLRKYKYPPDKTPYAVELILKQAEVMSNS  1041
             +R+ VR+ L+KY YPPD    AVE ++ QAE+M+++
Sbjct  1003  MRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

110) hsdR in NC_020547


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  792 bits (2999),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 467/1047 (45%), Positives = 749/1047 (72%), Gaps = 32/1047 (3%)

Query  2     NETQLENLCLDWFTENGWEVVHGIDIAPESSNPLRKDYKQVLIESDLHAAFERLNPHLPT  61
             NE +LE++ L+W+   + +   G +I+  +  P RK  K+V+++  L+ A+ ++N+++  
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62    SCFEQVWQKLSKPESLDLVTNNRAFHRMLLEGVPV-TYKKQDDWVHDHAFLVDFNHVHQN  120
               +E+  + L+   S +L+ NN +FH  L++G+ +  Y  +++ + +   +VDF+H ++N
Sbjct  66    RFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNN  125

Query  121   RFVAINQFTILGTKQPRRPDIICFINGIPFAVLELKSPTDENADIWDAFNQLQTYKEEVS  180
              F+A+NQFT++     +RPDI+ FING+P+ V+ELK++T+E  ++ D+++QL+TYK  ++
Sbjct  126   DFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  181   DLFIFNEALVVSDGVTARVGSLAANQERFLPWRTIKNEDDKPALEWELETVVRGFFDREL  240
             +LF FNE LV SDG+ ++ GSL+AN +RF+ WR+   E + ++    L+ ++ G ++   
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPKT  245

Query  241   FLDYIRFFVLFETDGEKIIKKI-AGYHQFHAVREAVQATIAAANPNGDKKAGVVWHTQGS  299
             +LD IR+FVLF+ DG   I KI A+YHQ+ AV  AV+ ++ A++ +GD K+GV+WHTQGS
Sbjct  246   LLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQGS  305

Query  300   GKSISMCCYAGKLLQQPAMHNPTLLIVTDRNDLDGQLFETF-----SNAQDLLKQTPVQA  354
             GKS++M  ++GKL+Q   ++NPTL+IVTDRNDLD QL+ TF      ++++LL+QTP QA
Sbjct  306   GKSLTMVFFSGKLIQ--MLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQA  363

Query  355   NNRDELRRFLAERESGGIIFTTVQKFALLDDESEHPLLNGRHNIVVMSDEAHRSQYGLKA  414
             + R EL+ +L+  ESGGI+FTT+QKF   ++E+  + L  R N++VM+DEAHR+QYG++A
Sbjct  364   ETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFNA  422

Query  415   KLSNDG-TYKFGYAKHMRDALKNAAFIGFTGTPISSEDKDTRAVFGDYVSIYDIQDAVDD  473
             K  + G   K+GYAK +RDAL NA+F+GFTGTP++S DK+T+ VFG+Y+ +YD+ +AV D
Sbjct  423   KYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVAD  482

Query  474   GATVPIYYESRLAKLDINQT-EIEDLSdqvdevvedeedvGNREKTKSEWSRLEKLVGAT  532
             G+TV IYYESR+  L++ Q+ ++++      + + ++++ + +++ KS WSR+E L GA 
Sbjct  483   GSTVKIYYESRVIPLNLPQSLDLDE----AYNDITEDQEEDVKQRLKSKWSRIEALAGAK  538

Query  533   PRLKQIAADLVTHFEARTETTAGKGMIVTMSREICVHLYNEIVALRPDWHEPDPEKGKIK  592
             PR+  +A D++ HFE+R ++  GKGMIVTMSR I V+LY+EI+ L+P+WH  D +KG IK
Sbjct  539   PRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIK  598

Query  593   IVMTGSASDKPLLQRHIYNKQVKKRLEKRFKDVNDPLQLVIVRDMWLTGFDAPCTHTMYI  652
             +VMTGS+SD   +QRHI  K+ +  LEKR KDVND LQLVIVRDMWLTGFD P  HTMYI
Sbjct  599   VVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYI  658

Query  653   DKPMKGHNLMQTIARVNRVFKDKQGGLVVDYIGIANELKQALKTYTDAKGKGEPTLRAEE  712
             DKPMKGHNLMQ+IARVNRVFKDK GGL+VDY+GIA+ LK+ALK YT++ ++++ ++ ++ 
Sbjct  659   DKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDK  717

Query  713   AYAVLAEKMDAIRGMFAKTNEQAGMDLSAYETQAHR----LIIPAANYVLSL-KDGKKRF  767
             A  ++  K D I++M+ +      +D S ++++        I  + +YV++L  D ++RF
Sbjct  718   AVELMLLKYDVIQDMLYN------LDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRF  771

Query  768   LDLVLAINKAFSLCSTLDEAKNLHKEIAFYLAIKAVISK----HTSVDRKLSQAEKDSTL  823
             +  V  + KAF+LC+T   A++L+ EIAF+ A+KA + K          + + AE ++ +
Sbjct  772   IKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEI  831

Query  824   KQILDNAVIADGVTDVFAMCGLDKPNIGLLSDEFLEDVRQMPYRNLAVELLEKLLNDGIK  883
             +Q++ ++V++++V DV+   GL++P++++LSD+FL DV  +  +N+AVELL++LL++ +K
Sbjct  832   NQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVK  891

Query  884   AKTRNNVVQEKRFSDRLQETLRKYNNRAIETSQVIEELIQMAKEFQAEMQREAALGLNPD  943
             +  + N    KRFS+ L +++ KYN+R+IETS+VIEELIQ+AK+++ E QR   LGLN+D
Sbjct  892   SLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSD  951

Query  944   EIAFYDALANNESAVRELGDDTLKQIAREITEKLRKSTTVDWQVRDSVRAQLKILVRRTL  1003
             EIAFYDAL ++E+A + + D  L+ IA+E+T  ++ + +VDW  RDS +A++++ VRR L
Sbjct  952   EIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLL  1011

Query  1004  QRWKYPPDKAAEAIELVMKQAETLSNA  1030
             ++  YPPD    A+E V+ QAE +++ 
Sbjct  1012  KKYGYPPDLQKMAVEQVVEQAELMASN  1038

111) Arth_0986 in NC_008541


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  792 bits (2999),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 468/1041 (45%), Positives = 743/1041 (72%), Gaps = 15/1041 (1%)

Query  3     DLNESTVELAVLQYLRELGYTTAFGPDIAPEAAAAERSSYEQVYLLSRLRAAAVQINRGL  62
             ++NE  +E  VL+ L  L+Y    G +I+  + A+ER S  +V L  RL  A  +IN ++
Sbjct  4     QFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDI  63

Query  63    DAALIDEAIKRLGRAESQNPVAENLRVHELLTEGVPVEHRDAEGSVRTTRVRLIDFEDPA  122
             ++ +I+ AI  L    S N + +NL  HE L +G+ +E+ D EG      V+++DFE+P 
Sbjct  64    HPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQ  123

Query  123   GNDWLAVNQFTIIENGKNRRPDVVLFLNGMPLGLLELKNLADEHATLKGAWNQIQTYRHD  182
              ND LAVNQFT+++ +  +RPD+VLF+NG+P+ ++ELKN ++E   + ++ +Q++TY+  
Sbjct  124   NNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  183   IPSLFTPNAVTVVSDGVSAAMSSFTGGFEHYAPWKTIDG-REVVMNLPAVEVLIKGVFDQ  241
             IP LFT N V V SDG+++  +S+T+ ++++  W++ DG  E   +L++++VLI+G+++ 
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNP  243

Query  242   KRFLDILQNFIVFSDESKGLVKRV-AKYHQYWAVNAAVESTIEAAGPDGDRRGGVVWHTQ  300
             K +LD+++ F++F D++KG + ++ A YHQY AVN AV+ ++ A++ +GD +GGV+WHTQ
Sbjct  244   KTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQ  303

Query  301   GSGKSIEMLLYAAKIMRDIRMGNPTLLFITDRNDLDDQLFGEVFAPA------EILPEKP  354
             GSGKS+ M+++++K+++   + NPTL+++TDRNDLD+QL++  F  +       +L + P
Sbjct  304   GSGKSLTMVFFSGKLIQ--MLNNPTLVIVTDRNDLDNQLYS-TFVKSKGRSGKGLLRQTP  360

Query  355   VQadsradlrsllrrasGGIIFTTVQKFAPEAGGDTNPVLTDRRNVVVVADEAHRSQYGF  414
              QA++R +L+SLL   SGGI+FTT+QKF PE      + LT+R+NV+V+ADEAHR+QYGF
Sbjct  361   KQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGF  420

Query  415   TESLDERTGQLKSGLAKHMRDALPNATYLGFTGTPIESNDKSTRSVFGDYIDIYDLTRAV  474
                 D++   +K G AK +RDALPNAT++GFTGTP+ S DK+T+ VFG+YID+YD+T+AV
Sbjct  421   NAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV  480

Query  475   EDGATVRIFYESRLAKVSLDADVHAAIdeladeitetaeedeatRAKSRWARLEAVVGAN  534
              DG+TV+I+YESR+  ++L   ++  +DE  ++ITE  EED   R KS+W+R+EA+ GA+
Sbjct  481   ADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAK  538

Query  535   DRLDVIAGDIVDHWEKRRTEMFGKAMIVTMSRRIAVDLYDKIVKLKPEWHTDDPTTGMIK  594
              R++ +A DI++H E R+  M GK+MIVTMSRRIAVDLYD I++LKPEWH+DD   G+IK
Sbjct  539   PRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIK  598

Query  595   VVMTGSAADPQAFQPHIYDKKTRKDLKLRAKDPNDSLEIVIVRDMWLTGFDAPSMHTMYV  654
             VVMTGS++DP +FQ HI  KK R  L  R KD ND L++VIVRDMWLTGFD PSMHTMY+
Sbjct  599   VVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYI  658

Query  655   DKPMQGAGLMQAIARVNRTFRDKPGGLIVDYIGVATNLRRALAEYSPSDRDQAGVPIEEI  714
             DKPM+G  LMQAIARVNR F+DKPGGLIVDY+G+A +L+ AL EY+ SD+ Q+++  +  
Sbjct  659   DKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKA  718

Query  715   VSAMLEKHDIVRGLLHGCRYNSSPllapaarlaqhalVLDFVMA-DPDRTARYLDQVLAL  773
             V  ML K D+++++L    Y+       + R    +  +D+V++ + D   R++  V  L
Sbjct  719   VELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTEL  778

Query  774   AKAFALCGARDEAAAIRNDVRMFADVRAATLK-IQNPDSGRAGSGAVEIDTAIGQLVNEA  832
             +KAFALC++   A  + +++  F  V+A+ +K +Q P  G++   + E+++ I QLV+++
Sbjct  779   GKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQS  838

Query  833   VTADEVVDIYKLAGIETPELSILSDEFLDTLAGKEKPNLQMGLLRRLINDQIRTVQRTNI  892
             V +++V+D+Y+  G+E P+LSILSD+FL  + G  + N+ + LL RL+++Q++++ +TN 
Sbjct  839   VVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNA  898

Query  893   VQARKFSEQLDEAINRYTNRTLTTAEIIAELVKLAKDMRNQNDRHNRLGLSVAEAAFYDA  952
               +++FSE L+++IN+Y +R++ T+ +I EL++LAKD++++++R N LGL+  E AFYDA
Sbjct  899   TVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDA  958

Query  953   IVQNDVAVLQMGDDTLKKIAVNLVSTVQRSATIDWSLKHSVRAAMRSKIRRLLARYDYPP  1012
             +V ++ A   M D  L+ IA +L  TV+ + ++DWS ++S +A MR  +RRLL +Y+YPP
Sbjct  959   LVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPP  1018

Query  1013  DHEEKAIELILRQAELIAGTE  1033
             D +  A+E ++ QAEL+A+ +
Sbjct  1019  DLQKMAVEQVVEQAELMASNQ  1039

112) Ser39006_0954 in NC_022268


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  791 bits (2993),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 466/1056 (45%), Positives = 759/1056 (72%), Gaps = 38/1056 (3%)

Query  2     LSEDDLEQMSLGWFAGQGWEILHGPDIAPDSDNPLRISFHDVFLRPVLREQLAKLNPHLP  61
             ++EDDLEQ+ L W+ + + +   G +I+  +  P R S  DV L+  L   L K+N+++ 
Sbjct  5     FNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIH  64

Query  62    ASVLDEVLARITRAESPDIVVSNKAFHHLLLAGVPVE-YKRDDKVIHDTALLMDFNHPGN  120
             +  ++  +  +T   SP+++ +N +FH+ L+ G+ +E Y  +++ I +   ++DF+HP N
Sbjct  65    PRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQN  124

Query  121   NHFTVVNQVAISGTKQLRRPDVICYINGLPVAVIELKSPIDANADIWTAFNQLQTYKNEI  180
             N+F  VNQ ++      +RPD++ +INGLP+ VIELK++ +   ++  +++QL+TYK  I
Sbjct  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  181   SDLFICNEALVISDGYNARIGSLTADEERYLPWKTISNEDDKPLLEWQLETVVKGFFNRE  240
             ++LF  NE LV SDG N++ GSLTA+ +R++ W++   E + +     L+ +++G +N  
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPK  244

Query  241   LLLDYIRYFILFENDGK-HLIKKIAAYHQFHAVREAVSATIVASTGKFLPLRCDIKPGSK  299
              LLD IRYF+LF++DGK H+ K +AAYHQ+ AV  AV  +++AS+G           G  
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSG----------QGDG  294

Query  300   KAGVVWHTQGSGKSISMCCYAGKLLQQEEMNNPTIVVVTDRNDLDGQLYATFCQ-----A  354
             K+GV+WHTQGSGKS++M  ++GKL+Q   +NNPT+V+VTDRNDLD QLY+TF +     +
Sbjct  295   KGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSG  352

Query  355   KDLLKQEPQQASDRDQLREMLAARESGGIIFTTVQKFAPLDGEKVHPALSVRDNIVVISD  414
             K+LL+Q P+QA  R +L+ +L+  ESGGI+FTT+QKF P + E + +AL+ R N++V++D
Sbjct  353   KGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMAD  411

Query  415   EAHRSQYGLSATLDRETGVYKYGYAKHMRDALPNASFMGFTGTPVSSEDKDTRAVFGDYV  474
             EAHR+QYG++A  D      KYGYAK +RDALPNA+F+GFTGTPV+S DK+T+ VFG+Y+
Sbjct  412   EAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYI  471

Query  475   SIYDIQDAVEDGATVQIFYESRLAKLDLNHAELEELSNQVDELVedeetdqkektkGDWS  534
              +YD+ +AV DG+TV+I+YESR+  L+L ++   +L +  +++ ED+E D K++ K+ WS
Sbjct  472   DVYDMTQAVADGSTVKIYYESRVIPLNLPQSL--DLDEAYNDITEDQEEDVKQRLKSKWS  529

Query  535   RLEKLVGSEPRIHQVAADLVKHFEARNATMDGKAMVVAMSRDICVRLYNALVALRPEWHS  594
             R+E L G+ PR++ +A D+++HFE+R+ +M GK+M+V+MSR I V LY+ ++ L+PEWHS
Sbjct  530   RIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHS  589

Query  595   EDVEKGSLKVIMTGSASDKEHLQSHIYNKQTKKRLETRFKDLDDPLKIVIVRDMWLTGFD  654
             +D +KG +KV+MTGS+SD   +Q HI  K+ +  LE R KD++D L++VIVRDMWLTGFD
Sbjct  590   DDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFD  649

Query  655   APCCHTMYIDKPMRGHNLMQAIARVNRVFKDKPSGLVVDYIGIANELKDALKTYTDSKGK  714
              P  HTMYIDKPM+GHNLMQAIARVNRVFKDKP+GL+VDY+GIA+ LK+ALK YT+S ++
Sbjct  650   VPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQ  708

Query  715   GQTTVDTKEAFSVLLEKLDIIHGMFAKTATDPGFDYSAF--EHNPQR--VLLDAANYILG  770
             +QT++DT  A  ++L K D+I++M+ +      +DYS F  E +++R   + ++ +Y++G
Sbjct  709   AQTAIDTDKAVELMLLKYDVIQDMLYN------LDYSKFNSEKKSERYYTISNTMDYVIG  762

Query  771   L-DDGKKRYFDVVLALNKSWSLCSTLDEAKPLQKELAFLSAVKVAIIKLTTTDK----KF  825
             L +D ++R++  V  L K+ +LC+T   A+ L+ E+AF+ AVK +++KL    K    + 
Sbjct  763   LGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRK  822

Query  826   SQSEKNSLLSRILDNAIIATGVDDVFALAGLDKPNIGLLSDEFLQEVHDMPQRNLAVELL  885
             + +E ++ +++++ +++++ +V DV+   GL++P++++LSD+FL++V+++ Q+N+AVELL
Sbjct  823   TPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELL  882

Query  886   QKLLNDGIHARANNNVVQEKKYSDRLRTVLLKYNNRAIETAQVIEELIQMAKEFQAAMAR  945
             ++LL++ + +  + N    K++S+ L   + KYN+R+IET++VIEELIQ+AK+++    R
Sbjct  883   NRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQR  942

Query  946   DDALGLNPDEIAFYDALAENESAVRELGDDILKKLAIEVTLKLRQSTTVDWQVRESVRAR  1005
             ++ LGLN+DEIAFYDAL  +E+A + + D  L+ +A E+T  ++++ +VDW  R+S +A+
Sbjct  943   GNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAK  1002

Query  1006  LRILVRQTLRKYKYPPDKTAGAVELILKQAEVVSNS  1041
             +R+ VR+ L+KY YPPD    AVE ++ QAE+++++
Sbjct  1003  MRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

113) PSPTO_1089 in NC_004578


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  788 bits (2982),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 493/1059 (47%), Positives = 753/1059 (72%), Gaps = 48/1059 (4%)

Query  2     TEDQLEQETLGWLAETGYSHVYGPTIAYDGESPERDNYRQVLLVERLRSAIVRLNPKVPL  61
              ED+LEQ  L WL   +Y    G  I+  G +PER + ++V+L ERL  A+ ++N+ +  
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62    AAREDALKQVQELGL---PVQLSANRLFHRLLVSGVPVQ-YQKDGETRGDFVRLIDWVEV  117
                E   K ++EL L   P  L  N  FH  L++G+ ++ Y+ +G++  ++V+++D  + 
Sbjct  66    RFIE---KAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHP  122

Query  118   KANDWLAINQFSIQGPKHTRRPDIILFVNGLPLVLLELKNPADVKADLGKAFDQIQTYKE  177
             + ND LA+NQF++     T+RPDI+LF+NGLP+V++ELKN+++   ++  +++Q++TYK 
Sbjct  123   QNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKM  182

Query  178   QIPDLFQYNEILVISDGSEARMGSLSADVERFMNWRTIDGKDLDPLGQFNELETLVRGAL  237
             +IP+LF +NE+LV SDG +++ GSL+A+ +RFM WR+ DG + ++ + +  L+ L+ G L
Sbjct  183   RIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDG-ETESSSSLASLDVLINGML  241

Query  238   APPMLLDYLRYFVLFEDDGR--LVKKIAGYHQFHAVRAAIGQVVSASRPGGTHKGGVVWH  295
              P  LLD +RYFVLF+DDG+  + K +A+YHQ+ AV  A+++ + AS   G  KGGV+WH
Sbjct  242   NPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWH  301

Query  296   TQGSGKSITMTCFAARVMQDAAMENPTIVVITDRNDLDGQLFGVF-----SLSHDLLREQ  350
             TQGSGKS+TM  F+++++Q   ++NPT+V++TDRNDLD QL++ F       + +LLR+ 
Sbjct  302   TQGSGKSLTMVFFSGKLIQ--MLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQT  359

Query  351   PFQVESRGDLRSKLTNRPSGGIVFATIQKFMPGADEDIFPILSDRSNIVVIADEAHRTQY  410
             P Q E+R +L+S L+   SGGIVF+T+QKF P  +E I + L++R N++V+ADEAHRTQY
Sbjct  360   PKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQY  418

Query  411   GFGAELKVSEATADTASQTRYQVGYAQHLRDALPNATFVAFTGTPVSSEDRDTRSVFGEY  470
             GF A         D +   +Y  GYA+ LRDALPNATFV+FTGTPV+S D++T+ VFG+Y
Sbjct  419   GFNAKY------DDKGEGIKY--GYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNY  470

Query  471   IHIYDMQQATEDGATVAIYYESRLAKLSLKDSELPAIddqfdelaedeeddqqSRLKSRW  530
             I++YDM QA  DG+TV IYYESR+  L+L +S    +D+ +++++ED+E+D + RLKS+W
Sbjct  471   IDVYDMTQAVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITEDQEEDVKQRLKSKW  528

Query  531   AALEKVVGAEPRIRNVAADLVKHSEERNQGLVSMGQMPGKAMIVAMSREICVHLYNEITA  590
             + +E + GA PR+  +A D+++H E R+Q+      M GK+MIV+MSR I V+LY+EI  
Sbjct  529   SRIEALAGAKPRVEALAKDIIQHFETRQQA------MKGKGMIVTMSRRIAVDLYDEIIR  582

Query  591   LRPEWHDEDPEKGAIKVIMTGSASDKASLRPHIYSGQIKRR--LEKRFKDPLDPLKLVIV  648
             L+PEWH +D +KG IKV+MTGS+SD +S++ HI  G  KRR  LEKR KD  D L+LVIV
Sbjct  583   LKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHI--GPKKRRSVLEKRMKDVNDELQLVIV  640

Query  649   RDMWLTGFDAPCVHTLYVDKPMKGHNLMQAIARVNRVFKDKQGGLVVDYIGIANELKAAL  708
             RDMWLTGFD P +HT+Y+DKPMKGHNLMQAIARVNRVFKDK GGL+VDY+GIA+ LK AL
Sbjct  641   RDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEAL  700

Query  709   KEYTGSKGKGRPTVDAHEAYSVLEEKLDVLRSLLHGFDCSDFLTGGHK----LLAGAANH  764
             KEYT S ++++ ++D++ A  ++  K DV++ +L  +D S F +         ++ + + 
Sbjct  701   KEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDY  759

Query  765   VLSL-EDGKKRFADTALAMSKAFTLCCTLDEAKAVREEVAFFQAIKVILIK----REVSQ  819
             V++L ED ++RF  T   ++KAF+LC T   A+ + +E+AFF+A+K  L+K       ++
Sbjct  760   VIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGK  819

Query  820   QKKTDEERELVIRQIIGNAVVSGDVVDIFQAVGLDKPNIGLLDDTFLAEVRNLPEKNLAV  879
              +KT  E E  I Q+++++VV+ DV+D++Q++GL++P++++L D FL +V  L +KN+AV
Sbjct  820   TRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAV  879

Query  880   ELLERLLEDEIKSHYSTNLAQEKKFSELLVNVIKRYQNRSIETAQVIEELIGMAKKFAAA  939
             ELL+RLL +++KS   TN +  K+FSE+L N I++Y++RSIET++VIEELI +AK +   
Sbjct  880   ELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQE  939

Query  940   SQRGDALGLNDDELAFYDALANNEASVRELGHEILAKIAHELTASLRANVSVDWNSRESv  999
              QRG+ LGLN DE+AFYDAL ++E++ + + +  L  IAHELT +++ N+SVDW+ R+S 
Sbjct  940   QQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSA  999

Query  1000  raklrilvrrilrkYKYPPDHAEEAAQLILNQAETLCEA  1038
             +AK+R+ VRR+L+KY YPPD    A + +++QAE +   
Sbjct  1000  KAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

114) AFE_2790 in NC_011761


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  786 bits (2976),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 452/1040 (44%), Positives = 734/1040 (71%), Gaps = 34/1040 (3%)

Query  3     PLNESTIEHHAIALFKELGYAYAFGPDIGPDSNQKERADYENPLLLERLRTAIHRLNPEA  62
              +NE  +E+  +  +  L+Y Y  G +I+  +   ER    + +L ERL  A++++N++ 
Sbjct  4     QFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDI  63

Query  63    PKEIRDEALRHVQAIAVGGLMTENSLFQQMLVEGVRVAHMVD-GEERGSIVRLIDYDHPE  121
                + + A++++       L+ +N  F++ L++G+ + +  D G+    IV+++D++HP+
Sbjct  64    HPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQ  123

Query  122   KNDLLVVNQYTVIHNRINRRADLVVFVNGLPLGLFELKNMADANATTRRAWNQLQTYQAD  181
             +ND+L VNQ+TV++    +R+D+V+F+NGLP+ ++ELKN ++       + +QL+TY+  
Sbjct  124   NNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  182   IPNLMAYNAILVISDGLKAAVGCLGAPYERFLPWKTIDGQELMDRGDDPLRFLIHGVFEP  241
             IP+L ++N +LV SDG+++  G L A Y+RF+ W++ DG+     +  +L  LI+G+++P
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNP  243

Query  242   VRFLDLIRYFIAISDDGR-KLSKKIAAYHQFHAAQKALLTTLASAGIGGDRRGGVVWHTQ  300
               +LDLIRYF+ + DDG+  +SK +AAYHQ+ A +KA+  +L +++  GD +GGV+WHTQ
Sbjct  244   KTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQ  303

Query  301   GSGKSLTMLFFAGMLIQHPALENPTILMLTDRTNLDTQLFDTFA-----AGKQLLRQDPQ  355
             GSGKSLTM+FF+G LIQ   L+NPT++++TDR +LD QL+ TF      +GK LLRQ P+
Sbjct  304   GSGKSLTMVFFSGKLIQ--MLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPK  361

Query  356   QADSVSDLRELLQRASGGVLFSTIQKFQKDRDEPLGKHPVLSERKNIIVMVDEAQRSQY-  414
             QA++  +L+ LL   SGG++F+T+QKF+ +++E +   + L+ERKN+IVM DEA+R+QY 
Sbjct  362   QAETRKELKSLLSVESGGIVFTTMQKFEPEQNETI--MAALTERKNVIVMADEAHRTQYG  419

Query  415   ---------EILK-GYAANLRAALPNATFVAFTGTPLELDDRDTRVVFGDYIDIYDIQRA  464
                      E +K GYA  LR ALPNATFV+FTGTP+   D++T++VFG+YID+YD+ +A
Sbjct  420   FNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQA  479

Query  465   VEDGATVPIYYESRLVRLNLPEDQRPLIDSTFEEITEDDEQENKERLKTRWAQLEALVGA  524
             V DG+TV IYYESR++ LNLP+     +D ++++ITED+E++ K+RLK++W+++EAL GA
Sbjct  480   VADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGA  537

Query  525   PKRVEQIAADLLDHWEKRKSILSGKAMIVAMSRRIAVELYDAIVRIHPDWRGDDDTQGRI  584
               RVE +A D+++H E R+  + GK+MIV+MSRRIAV+LYD I+R+ P+W++DDD +G I
Sbjct  538   KPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVI  597

Query  585   KVVMTGSASDPIEWKPHIRSKAGNEAIADRLKDPDDPLEIVIVRDMWLTGFDAPALNTLY  644
             KVVMTGS+SDP   + HI +K     +  R+KD +D L++VIVRDMWLTGFD P+++T+Y
Sbjct  598   KVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMY  657

Query  645   VDKPMRGHTLMQAIARVNRVFTNKSGGLVVDYIGIAQDLKNAIATYTRSGGKGNPAETVQ  704
             +DKPM+GH LMQAIARVNRVF +K+GGL+VDY+GIA+ LK+A+  YT  +++++ A   +
Sbjct  658   IDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYT-ESDQAQTAIDTD  716

Query  705   TAIKVLLEKLDICRGIFHGCDYQDYLTDDGSEKVATLRKATEFILSQELTEEGVKRRFRN  764
              A+ ++L K D+ ++++   DY  + ++  SE+  T+ ++ +++++  L E+  ++RF +
Sbjct  717   KAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIG--LGEDE-RQRFIK  773

Query  765   ATSGLKKAATLAAGDDIVERCRTEIIFFLSVRATL------DKSSEAESLVEEQEYAIRQ  818
             + + L KA +L A +   +    EI FF +V+A L       K + +     E E  I Q
Sbjct  774   TVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQ  833

Query  819   LIDQSIAPEGVVDLYAVAGLPKSEISLLSDEFIHQIEAMPEKNLALEMLRRLLQDKVRKE  878
             L+ QS+  E+V+D+Y   GL ++++S+LSD+F+ ++E++ +KN+A+E+L RLL+++V+  
Sbjct  834   LVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSL  893

Query  879   GKGNLIQSKAFSEKLEEALRKYHNRSVDTVEVMQELIELAKALQALDQRHAELGLSKDEA  938
              K N   SK FSE L +++ KY++RS++T  V++ELI+LAK ++  +QR  ELGL+ DE 
Sbjct  894   MKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEI  953

Query  939   AFYDALATNDSAVQAMGDEALKMIAKEVADTVRQNTRIDWSIREQARAHLRRMVKRVLRK  998
             AFYDAL ++++A +AM D  L+ IA E++ TV++N  +DWS R+ A+A +R  V+R+L+K
Sbjct  954   AFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKK  1013

Query  999   HGYPPDMQEGAVNLVIEQAE  1018
              GYPPD+Q  AV+ V+EQAE
Sbjct  1014  YGYPPDLQKMAVEQVVEQAE  1033

115) Lferr_2413 in NC_011206


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  786 bits (2976),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 452/1040 (44%), Positives = 734/1040 (71%), Gaps = 34/1040 (3%)

Query  3     PLNESTIEHHAIALFKELGYAYAFGPDIGPDSNQKERADYENPLLLERLRTAIHRLNPEA  62
              +NE  +E+  +  +  L+Y Y  G +I+  +   ER    + +L ERL  A++++N++ 
Sbjct  4     QFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDI  63

Query  63    PKEIRDEALRHVQAIAVGGLMTENSLFQQMLVEGVRVAHMVD-GEERGSIVRLIDYDHPE  121
                + + A++++       L+ +N  F++ L++G+ + +  D G+    IV+++D++HP+
Sbjct  64    HPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQ  123

Query  122   KNDLLVVNQYTVIHNRINRRADLVVFVNGLPLGLFELKNMADANATTRRAWNQLQTYQAD  181
             +ND+L VNQ+TV++    +R+D+V+F+NGLP+ ++ELKN ++       + +QL+TY+  
Sbjct  124   NNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  182   IPNLMAYNAILVISDGLKAAVGCLGAPYERFLPWKTIDGQELMDRGDDPLRFLIHGVFEP  241
             IP+L ++N +LV SDG+++  G L A Y+RF+ W++ DG+     +  +L  LI+G+++P
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNP  243

Query  242   VRFLDLIRYFIAISDDGR-KLSKKIAAYHQFHAAQKALLTTLASAGIGGDRRGGVVWHTQ  300
               +LDLIRYF+ + DDG+  +SK +AAYHQ+ A +KA+  +L +++  GD +GGV+WHTQ
Sbjct  244   KTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQ  303

Query  301   GSGKSLTMLFFAGMLIQHPALENPTILMLTDRTNLDTQLFDTFA-----AGKQLLRQDPQ  355
             GSGKSLTM+FF+G LIQ   L+NPT++++TDR +LD QL+ TF      +GK LLRQ P+
Sbjct  304   GSGKSLTMVFFSGKLIQ--MLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPK  361

Query  356   QADSVSDLRELLQRASGGVLFSTIQKFQKDRDEPLGKHPVLSERKNIIVMVDEAQRSQY-  414
             QA++  +L+ LL   SGG++F+T+QKF+ +++E +   + L+ERKN+IVM DEA+R+QY 
Sbjct  362   QAETRKELKSLLSVESGGIVFTTMQKFEPEQNETI--MAALTERKNVIVMADEAHRTQYG  419

Query  415   ---------EILK-GYAANLRAALPNATFVAFTGTPLELDDRDTRVVFGDYIDIYDIQRA  464
                      E +K GYA  LR ALPNATFV+FTGTP+   D++T++VFG+YID+YD+ +A
Sbjct  420   FNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQA  479

Query  465   VEDGATVPIYYESRLVRLNLPEDQRPLIDSTFEEITEDDEQENKERLKTRWAQLEALVGA  524
             V DG+TV IYYESR++ LNLP+     +D ++++ITED+E++ K+RLK++W+++EAL GA
Sbjct  480   VADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGA  537

Query  525   PKRVEQIAADLLDHWEKRKSILSGKAMIVAMSRRIAVELYDAIVRIHPDWRGDDDTQGRI  584
               RVE +A D+++H E R+  + GK+MIV+MSRRIAV+LYD I+R+ P+W++DDD +G I
Sbjct  538   KPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVI  597

Query  585   KVVMTGSASDPIEWKPHIRSKAGNEAIADRLKDPDDPLEIVIVRDMWLTGFDAPALNTLY  644
             KVVMTGS+SDP   + HI +K     +  R+KD +D L++VIVRDMWLTGFD P+++T+Y
Sbjct  598   KVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMY  657

Query  645   VDKPMRGHTLMQAIARVNRVFTNKSGGLVVDYIGIAQDLKNAIATYTRSGGKGNPAETVQ  704
             +DKPM+GH LMQAIARVNRVF +K+GGL+VDY+GIA+ LK+A+  YT  +++++ A   +
Sbjct  658   IDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYT-ESDQAQTAIDTD  716

Query  705   TAIKVLLEKLDICRGIFHGCDYQDYLTDDGSEKVATLRKATEFILSQELTEEGVKRRFRN  764
              A+ ++L K D+ ++++   DY  + ++  SE+  T+ ++ +++++  L E+  ++RF +
Sbjct  717   KAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIG--LGEDE-RQRFIK  773

Query  765   ATSGLKKAATLAAGDDIVERCRTEIIFFLSVRATL------DKSSEAESLVEEQEYAIRQ  818
             + + L KA +L A +   +    EI FF +V+A L       K + +     E E  I Q
Sbjct  774   TVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQ  833

Query  819   LIDQSIAPEGVVDLYAVAGLPKSEISLLSDEFIHQIEAMPEKNLALEMLRRLLQDKVRKE  878
             L+ QS+  E+V+D+Y   GL ++++S+LSD+F+ ++E++ +KN+A+E+L RLL+++V+  
Sbjct  834   LVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSL  893

Query  879   GKGNLIQSKAFSEKLEEALRKYHNRSVDTVEVMQELIELAKALQALDQRHAELGLSKDEA  938
              K N   SK FSE L +++ KY++RS++T  V++ELI+LAK ++  +QR  ELGL+ DE 
Sbjct  894   MKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEI  953

Query  939   AFYDALATNDSAVQAMGDEALKMIAKEVADTVRQNTRIDWSIREQARAHLRRMVKRVLRK  998
             AFYDAL ++++A +AM D  L+ IA E++ TV++N  +DWS R+ A+A +R  V+R+L+K
Sbjct  954   AFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKK  1013

Query  999   HGYPPDMQEGAVNLVIEQAE  1018
              GYPPD+Q  AV+ V+EQAE
Sbjct  1014  YGYPPDLQKMAVEQVVEQAE  1033

116) APECO78_16850 in NC_020163


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  782 bits (2958),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 495/1080 (46%), Positives = 786/1080 (73%), Gaps = 55/1080 (5%)

Query  5     TESDIEVMAIEHLQGLGYEYVYGPDIEPSGINPLRSYQ-QVILEDKVRTALQRINPHLSE  63
              E D+E + +E L++L+Y+Y  G +I  +G+ P R  + +V+L++++  AL++IN+++  
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  64    QKCEEALKQVMQISSPDLMANNLTFHRLLTEGINIEV-SKDGNTQGELASLIDFNDPTNN  122
             +  E A+ ++    SP+L+ NNLTFH  L +GI+IE    +G++  E+  ++DF++P NN
Sbjct  66    RFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNN  125

Query  123   AFLVINQLTIKEGNHTRRPDLILFINGLPLVVIELKNAADENATVTGAYNQIKTYQNQIP  182
              FL +NQ+T+ +G+ T+RPD++LFINGLP+VVIELKN+++E   V ++Y+Q+ TY+ +IP
Sbjct  126   DFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  183   GLFNYNAFNVISDGLEAKAGTVSADFSRYMTWKTANGKTQATSTQPQLEVLLQGLLNPVT  242
              LF +N   V SDG+++KAG+++A++ R+MTW++ +G T+++S+ + L+VL++G+LNP T
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPKT  245

Query  243   LLDIIRHFIVFEASKHEDSKGIISIRTVKKMAAYHQYYAVNAAVLSTIRASAVNADSPSA  302
             LLD+IR F++F    ++D+KG IS    K +AAYHQYYAVN AV                
Sbjct  246   LLDLIRYFVLF----QDDGKGHIS----KILAAYHQYYAVNKAV----------------  281

Query  303   EVALRQQGRNSKDLVNAQKTGDRKAGVVWHTQGSGKSLSMVFYTGKIVLALDNPTVVVIT  362
                        + L+ +   GD K+GV+WHTQGSGKSL+MVF++GK++  L+NPT+V++T
Sbjct  282   ----------DRALLASSGQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVIVT  331

Query  363   DRNDLDDQLFGTF-----SSATQLLRQTPKQANNREELKEYLRVASGGVVFTTIQKFQPD  417
             DRNDLD+QL++TF      S+  LLRQTPKQA+ R ELK  L V SGG+VFTT+QKF+P+
Sbjct  332   DRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPE  391

Query  418   DGSNIYELLSDRTNIVVIADEAHRSQYGFSAKEVDVKDSEGNVTGKRTVYGFAKYMRDAL  477
             +   I   L++R N++V+ADEAHR+QYGF+AK       +++  G +  YG+AKY+RDAL
Sbjct  392   QNETIMAALTERKNVIVMADEAHRTQYGFNAK------YDDKGEGIK--YGYAKYLRDAL  443

Query  478   PNATYLGFTGTPIEKTDVNTPAVFGNYVDIYDISQAVEDGATVRIFYESRLAKIAISDEG  537
             PNAT++GFTGTP+  TD NT  VFGNY+D+YD++QAV DG+TV+I+YESR+  + ++ ++
Sbjct  444   PNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLP-QS  502

Query  538   RQLIedfddefnedeLTLTQKERSKWARIEGLIGSSKRIKAIAADMVLHFEQRLKSNADH  597
              +L E ++D  +++E  + Q+ +SKW+RIE+L G+  R+ A+A D++ HFE R   +A  
Sbjct  503   LDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETR--QQAMK  560

Query  598   GKGMIVTMSRRIAAELYKEIIALKPEWHSDDLNDGIIKVVMTSSAADGPEIAKHHTTKKE  657
             GKGMIVTMSRRIA +LY EII LKPEWHSDD + G+IKVVMT+S++D   + +H   KK 
Sbjct  561   GKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKR  620

Query  658   RQVLANRMkddddklklVIVRDMWLTGFDAPSMHTLYIDKPMKGHNLMQAIARVNRVYKD  717
             R VL +RMKD +D L+LVIVRDMWLTGFD PSMHT+YIDKPMKGHNLMQAIARVNRV+KD
Sbjct  621   RSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKD  680

Query  718   KIGGLVVDYLGIASDLKEALSFYSDAGGRGDPAEVQEEAVTLMQEKLEILEGMMHGYDYK  777
             K GGL+VDY+GIA  LKEAL  Y+++ ++++ A   + AV LM  K +++++M+   DY 
Sbjct  681   KPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYS  739

Query  778   AYFAATTSQRLTIILESENHILGLDNGKGKMRFlaavaalsqafalaTPHDKAMEAAPEV  837
              + +   S+R   I ++ + ++GL+++  + RF+ +V+ L++AFAL + +  A E   E+
Sbjct  740   KFNSEKKSERYYTISNTMDYVIGLGED-ERQRFIKTVTELGKAFALCATEPTAQELNDEI  798

Query  838   AFFQAVKARLNKFTENS-DGSEEEHNDSLEVRVKQTIDQALVTDKVVDIFDAAGIQKPDI  896
             AFF+AVKA L K+ + + +G        +E  ++Q + Q++VT+ V+D++++ G+++PD+
Sbjct  799   AFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDL  858

Query  897   SVLSEEFLQEMKDYQHRNIALETLKKLLSDEIKVRSNQSITQGKKLIDMLTSAINGYQNK  956
             S+LS++FL+++ + +++N+A+E L++LL +++K   + + T +K++ +ML ++IN Y+++
Sbjct  859   SILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSR  918

Query  957   VLTAAEVIDELIKLAKTIQESDSLASQLNLSAYEYAFYSAVADNDSArelmekeklrelA  1016
              + ++ VI+ELI+LAK I++ +  +++L L++ E AFY A+  +++A+  ME  KLR +A
Sbjct  919   SIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIA  978

Query  1017  VVLTEAIRNNVSLDWTvkeaarakirvvvkrllkkYGYPPDMSLLATETVLKQAELLAGE  1076
               LT ++++N+S+DW+ +++A+AK+RV V+RLLKKYGYPPD+  +A E V+ QAEL+A++
Sbjct  979   HELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

117) ESA_00617 in NC_009778


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  782 bits (2958),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 464/1056 (44%), Positives = 742/1056 (71%), Gaps = 39/1056 (3%)

Query  2     LSEDDLEQQCLKWFAEQGWEVLHGPDIAPDGDNPLRASFHDVFLRPVMLEQLQSINPHLP  61
             ++EDDLEQ  L W+   + +   G +I+  G  P R S  DV L+  +   L+ IN+++ 
Sbjct  5     FNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIH  64

Query  62    VAVLEEVILRVAHAQSPDLVISNKAFQHLLLDGVPVE-YKRENKVVHDKALLMDFNHPAS  120
                +E  I  ++  +SP+L+ +N +F++ L++G+ +E Y  E + + +   ++DF+HP +
Sbjct  65    PRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQN  124

Query  121   NRFMVVNQVAIQGTKQVRRPDVIGYINGLPVAVIELKSPIDANADIWAAFNQLQTYKNEL  180
             N F+ VNQ ++      +RPD++ +INGLP+ VIELK++ +   ++  +++QL+TYK  +
Sbjct  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  181   SDLFICNEALVVSDGQNARIGSLTADEERFLPWKTISNEDDKPQFDWQLKTVVQGFFNRE  240
             ++LF  NE LV SDG N++ GSLTA+ +RF+ W++   E + +     L  +++G +N  
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPK  244

Query  241   LLLDYIRYFVLFENDGKRLIKKI-AAYHQFHAVREAVAATIVASTGKHLPLRSNITPGSK  299
              LLD IRYFVLF++DGK  I KI AAYHQ+ AV  AV  +++AS+G           G  
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSG----------QGDG  294

Query  300   KAGVVWHTQGSGKSISMCCYAGKLLQQAEMNNPTIVVVTDRNDLDGQLYATFCQ-----A  354
             K+GV+WHTQGSGKS++M  ++GKL+Q   +NNPT+V+VTDRNDLD QLY+TF +     +
Sbjct  295   KGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSG  352

Query  355   QDLLKQTPLQANDreelrellnareSGGIIFTTVQKFAPRDSEQSHPALNTRSNIVVISD  414
             ++LL+QTP QA +       L + ESGGI+FTT+QKF P ++E   +AL  R N++V++D
Sbjct  353   KGLLRQTPKQA-ETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMAD  411

Query  415   EAHRSQYGLSATLDRETGLYKYGYAKHMRDALPNASFMGFTGTPIASEDKDTRAVFGDYV  474
             EAHR+QYG++A  D      KYGYAK +RDALPNA+F+GFTGTP+AS DK+T+ VFG+Y+
Sbjct  412   EAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYI  471

Query  475   SIYDIQDAVDDGATVPIYYESRLAKLDLNHEELEALSEQVDELVEDEETGQQEKTKGDWS  534
              +YD+ +AV DG+TV IYYESR+  L+L +  L+ L E  +++ ED+E + +++ K+ WS
Sbjct  472   DVYDMTQAVADGSTVKIYYESRVIPLNLPQS-LD-LDEAYNDITEDQEEDVKQRLKSKWS  529

Query  535   RLEKLVGSAPRIQQVAADLVQHFEMRNAAMTGKAMIVAMSRDICVKLYDAIVAIRPDWHS  594
             R+E L G+ PR++ +A D++QHFE R+ AM GK+MIV+MSR I V LYD I+ ++P+WHS
Sbjct  530   RIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHS  589

Query  595   EDVEKGAIKVIMTGSASDNNVLQPHIYNKQTKKRLESRFKDLNDPLKLVIVRDMWLTGFD  654
             +D +KG IKV+MTGS+SD   +Q HI  K+ +  LE R KD+ND L+LVIVRDMWLTGFD
Sbjct  590   DDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFD  649

Query  655   APCCHSMYIDKPMRGHNLMQAIARVNRVFRDKPGGLVVDYIGIANELKQALKTYTDSKGK  714
              P  H+MYIDKPM+GHNLMQAIARVNRVF+DKPGGL+VDY+GIA+ LK+ALK YT+S ++
Sbjct  650   VPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQ  708

Query  715   GQTTVDAREAFAVLLEKFDIIHGMFSPSAGKPGFKYEGFSRDPLA--F--LRDAVNYILG  770
             +QT++D+  A  ++L K+D+I++M+        + Y  F+ +  +  +  + ++++Y++G
Sbjct  709   AQTAIDTDKAVELMLLKYDVIQDMLY------NLDYSKFNSEKKSERYYTISNTMDYVIG  762

Query  771   L-DEGKKRYLDVSLAMTKAWSLCNTLDEAKPLQEEFAFLSAIRVALLKLNPAAKFSQSEK  829
             L ++ ++R++     + KA +LC T   A+ L++E+AF+ A++ +L+KL  ++K +++ K
Sbjct  763   LGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRK  822

Query  830   NSL-----LSKILDNAVVATGVEDLFALIGLDKPNIGLLSDEFLEEVREMPQRNLAVELL  884
              +      +++++ ++VV+ +V D++  +GL++P++++LSD+FL +V  + Q+N+AVELL
Sbjct  823   TPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELL  882

Query  885   EKLLNDGIHARSGNNVVQQKKYSDRLKAVLLKYNNRAIETAQVIEELIAMAKSFQEAMAR  944
             ++LL++ + +    N    K++S+ L   + KYN+R+IET++VIEELI +AK +++   R
Sbjct  883   NRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQR  942

Query  945   DEALGLNPDEIAFYDALAENESAVRELGDDVLKKLAVEVTLKLRQSTTVDWQVRESVRAR  1004
             ++ LGLN+DEIAFYDAL  +E+A + + D  L+ +A E+T  ++++ +VDW  R+S +A+
Sbjct  943   GNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAK  1002

Query  1005  LRILVRQTLRKYKYPPDKTPHAVELILKQAEVVSNS  1040
             +R+ VR+ L+KY YPPD    AVE ++ QAE+++++
Sbjct  1003  MRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

118) EcE24377A_2911 in NC_009801


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  778 bits (2946),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 493/1080 (46%), Positives = 788/1080 (73%), Gaps = 55/1080 (5%)

Query  5     TESDIEVMVIEHLQGLGYEYVYGPDIEPSGINPLRSYQ-QVILEDKVRIALQRLNPHLSE  63
              E D+E +V+E L++L+Y+Y  G +I  +G+ P R  + +V+L++++  AL+++N+++  
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  64    QKCEEALKQVMQISTPDLMANNLAFHRLLTEGINIEV-SKDGNTQGELACLIDFNDPTNN  122
             +  E A+ ++    +P+L+ NNL+FH  L +GI+IE    +G++  E+  ++DF++P NN
Sbjct  66    RFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNN  125

Query  123   EFLVINQLTIKEGNHTRRPDLILFINGLPLVVIELKNAADENATVTGAYNQIKTYQNQIP  182
             +FL +NQ+T+ +G+ T+RPD++LFINGLP+VVIELKN+++E   V ++Y+Q+ TY+ +IP
Sbjct  126   DFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  183   VLFNYNAFNVISDGLEAKAGTVSADFSRYMTWKTANGKTQATSTQPQLEVLLQGLLNPVT  242
              LF +N   V SDG+++KAG+++A++ R+MTW++ +G T+++S+ + L+VL++G+LNP T
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPKT  245

Query  243   LLDVIRHFIVFEASKHEDSKGIISIRTVKKMAAYHQYYAVNAAVLSTIRASGVNADSPSA  302
             LLD+IR F++F    ++D+KG IS    K +AAYHQYYAVN AV                
Sbjct  246   LLDLIRYFVLF----QDDGKGHIS----KILAAYHQYYAVNKAV----------------  281

Query  303   EVALRQQGRNSKVLVNAQKTGDRKAGVVWHTQGSGKSLSMVFYTGKIVLALNNPTVVVIT  362
                        + L+ +   GD K+GV+WHTQGSGKSL+MVF++GK++  LNNPT+V++T
Sbjct  282   ----------DRALLASSGQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVIVT  331

Query  363   DRNDLDDQLFGTF-----SSATQLLRQTPKQADNREELKEYLRVASGGVVFTTIQKFQPN  417
             DRNDLD+QL++TF      S+  LLRQTPKQA+ R ELK  L V SGG+VFTT+QKF+P+
Sbjct  332   DRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPE  391

Query  418   DGSNIYELLSDRTNIVVIADEAHRSQYGFSAKEVDVKDSEGNVTGKRTVYGFAKYMRDAL  477
             +   I   L++R N++V+ADEAHR+QYGF+AK       +++  G +  YG+AKY+RDAL
Sbjct  392   QNETIMAALTERKNVIVMADEAHRTQYGFNAK------YDDKGEGIK--YGYAKYLRDAL  443

Query  478   PNATYLGFTGTPIEKTDVNTPAVFGNYVDIYDISQAVEDGATVRIFYESRLAKIAISDEG  537
             PNAT++GFTGTP+  TD NT  VFGNY+D+YD++QAV DG+TV+I+YESR+  + ++ ++
Sbjct  444   PNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLP-QS  502

Query  538   RQLIedfddefnedeLTLTQKERSKWARIEGLIGSSKRIKAIAADMVLHFEQRLKSNADH  597
              +L E ++D  +++E  + Q+ +SKW+RIE+L G+  R+ A+A D++ HFE R   +A  
Sbjct  503   LDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETR--QQAMK  560

Query  598   GKGMIVTMSRRIAAELYKEIIALKPEWHSDDLNDGIIKVVMTSSAADGPEIAKHHTTKKE  657
             GKGMIVTMSRRIA +LY EII LKPEWHSDD + G+IKVVMT+S++D   + +H   KK 
Sbjct  561   GKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKR  620

Query  658   RQVLANRMkddddklklVIVRDMWLTGFDAPSMHTLYIDKPMKGHNLMQAIARVNRVYKD  717
             R VL +RMKD +D L+LVIVRDMWLTGFD PSMHT+YIDKPMKGHNLMQAIARVNRV+KD
Sbjct  621   RSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKD  680

Query  718   KIGGLVVDYLGIASDLKEALSFYSDAGGRGDPAEVQEEAVTLMQEKLEILEGMMHGYDYK  777
             K GGL+VDY+GIA  LKEAL  Y+++ ++++ A   + AV LM  K +++++M+   DY 
Sbjct  681   KPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYS  739

Query  778   AYFAATTSQRLTIILESENHILGLDNGKGKMRFlaavaalsqafalaTPHDKAMEAAPEV  837
              + +   S+R   I ++ + ++GL+++  + RF+ +V+ L++AFAL + +  A E   E+
Sbjct  740   KFNSEKKSERYYTISNTMDYVIGLGED-ERQRFIKTVTELGKAFALCATEPTAQELNDEI  798

Query  838   AFFQAVKARLNKFTENS-DGSEEEHNDSLEVRVKQTIDQALVTDKVVDIFDAAGIQKPDI  896
             AFF+AVKA L K+ + + +G        +E  ++Q + Q++VT+ V+D++++ G+++PD+
Sbjct  799   AFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDL  858

Query  897   SVLSEEFLQEMKDYQHRNIALETLKKLLSDEIKVRSNQSITQGKKLIDMLTSAINGYQNK  956
             S+LS++FL+++ + +++N+A+E L++LL +++K   + + T +K++ +ML ++IN Y+++
Sbjct  859   SILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSR  918

Query  957   VLTAAEVIDELIKLAKTIQESDSLASQLNLSAYEYAFYSAVADNDSArelmekeklrelA  1016
              + ++ VI+ELI+LAK I++ +  +++L L++ E AFY A+  +++A+  ME  KLR +A
Sbjct  919   SIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIA  978

Query  1017  VVLTEAIRNNVSLDWTvkeaarakirvvvkrllkkYGYPPDMSLLATETILKQAELLAGE  1076
               LT ++++N+S+DW+ +++A+AK+RV V+RLLKKYGYPPD+  +A E ++ QAEL+A++
Sbjct  979   HELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

119) Tola_1223 in NC_012691


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  778 bits (2946),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 479/1086 (45%), Positives = 759/1086 (70%), Gaps = 70/1086 (6%)

Query  3     TEDQLEQQCLDWFKELGYQYQNGYDIAPDGDTPERDDYHQVILHQRLVDQLGTLNPNLPH  62
              ED+LEQ  L+W+  L+Y+Y++G +I+  G +PER    +V+LH+RL   L  +N+++  
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  63    DTRIELAKTVATTQTPILIKNNRAFHKYLIEGVPVE-YSVIEDGQSVTKNTHARLIDFEK  121
                      ++  ++P L+ NN +FH  LI+G+ +E Y   ++GQS+      +++DFE 
Sbjct  66    RFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYD--DEGQSIVEIV--KIVDFEH  121

Query  122   VENNEFLVVNQFTITGTKGNRRPDVVVFINGLPMGVIELKNPADDHADIWNAYNQLQTYK  181
              +NN+FL VNQFT+      +RPD+V+FINGLP+ VIELKN++++  ++ ++Y+QL+TYK
Sbjct  122   PQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYK  181

Query  182   EEIADLFALNEALVISDGWTARVGSLTANKERFLPWKTIESEEDKPLLEFQLETMVRGFF  241
               I++LF++NE LV SDG  ++ GSLTAN +RF+ W++ ++E + +     L+ ++ G +
Sbjct  182   MRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGML  241

Query  242   KPELLLDYIRYFVLFENDNDKIIKKI-AGYHQFHavraavkatviaaaCSDGVRDPRANY  300
             +P  LLD IRYFVLF++D    I KI A+YHQ+ A              + +V  +    
Sbjct  242   NPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYA-------------VNKAVDRALLAS  288

Query  301   ANQVISGSKKAGVVWHTQGSGKSISMVCYASKLLQQPEMNNPTLVVVTDRNDLDGQLFNT  360
             + Q   G  K+GV+WHTQGSGKS++MV +++KL+Q   +NNPTLV+VTDRNDLD QL++T
Sbjct  289   SGQ---GDGKGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYST  343

Query  361   FTMAQET-----LKQIPQQAEDRDSLRELLLNRQSGGIIFTTVQKFALLDNELEHPILSE  415
             F  ++       L+Q P+QAE R  L+ LL + +SGGI+FTT+QKF   +NE   + L+E
Sbjct  344   FVKSKGRSGKGLLRQTPKQAETRKELKSLL-SVESGGIVFTTMQKFEPEQNETIMAALTE  402

Query  416   RSNIVVVSDEAHRSQYGNKARLTDVKDENGNVTGQRYVYGYSKYMRDALPNASFIGFTGT  475
             R N++V++DEAHR+QYG +A+  D         G+   YGY+KY+RDALPNA+F+GFTGT
Sbjct  403   RKNVIVMADEAHRTQYGFNAKYDD--------KGEGIKYGYAKYLRDALPNATFVGFTGT  454

Query  476   PISMDDKDTRGVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDINQEEIEALN-DQVED  534
             P++  DK+T+ VFG+Y+ +YD+ +AV DG+TV IYYESR+  L++ Q    +L+ D+  +
Sbjct  455   PVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQ----SLDLDEAYN  510

Query  535   EIGEDEETSAREKIKSQWSALEKLVGAEPRIQQVAKDLVEHFTTRTETFPGKAMIVAMSR  594
             +I ED+E   ++++KS+WS +E L GA PR++ +AKD+++HF TR ++  GK+MIV+MSR
Sbjct  511   DITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSR  570

Query  595   EICVDLYNAIVAIKPDWHSDDPHKGAIKVVMTGSASDIDKMQPHIYDKKTKKLFEKRYKD  654
              I VDLY+ I+ +KP+WHSDD +KG IKVVMTGS+SD    Q HI  KK + ++EKR KD
Sbjct  571   RIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKD  630

Query  655   TDDELQLVIVRDMWLTGFDAPCCHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLVVDYI  714
              +DELQLVIVRDMWLTGFD P  HTMYIDKPMKGHNLMQAIARVNRVFKDKPGGL+VDY+
Sbjct  631   VNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYV  690

Query  715   GIANELKNALKTYTNSQGKGKPTVDTAEAFAILMEKIDIVRGMFATPVDGAVFNYRPDFE  774
             GIA+ LK+ALK YT+S+ +++ ++DT  A  +++ K D++++M+        ++Y + F+
Sbjct  691   GIAESLKEALKEYTESD-QAQTAIDTDKAVELMLLKYDVIQDMLYN------LDY-SKFN  742

Query  775   TKPLQ----LLPGAVNHISGLSHKNNKGDDVRDGKRRFLDVMAALMKAFSLCNTMDEVNG  830
             +         ++ +++ + GL++         D ++RF+  ++ L KAF+LC T    + 
Sbjct  743   SEKKSERYYTISNTMDYVIGLGE---------DERQRFIKTVTELGKAFALCATEPTAQE  793

Query  831   YKNEIAFYGAIKTAFLK-----HSTVDKKCSDELRNSALRQILNNAVVADGVDDIFKMVG  885
              ++EIAF+ A+K++++K          +K + E+ ++ + Q+++++VV+++V D+++ +G
Sbjct  794   LNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEV-EAEINQLVSQSVVTEDVIDVYQTLG  852

Query  886   LDKPNIGLLSEEFLEDVKNMKERNLAVELLEKLLRDEVKARMKNDVVQEKKYSERIMATL  945
             L++P++++LS++FL DV  +K++N+AVELL++LL+++VK+ MK +    K++SE +  ++
Sbjct  853   LEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSI  912

Query  946   QKYHNRNIETAQVIEELIQWAKEMQADAEMTDKLNLSVDEIAFYRALVTNEASVRVLGDD  1005
             +KY++R+IET++VIEELIQ AK+++ + +  + L L+ DEIAFY ALV++E++ + + D 
Sbjct  913   NKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDK  972

Query  1006  SLRQLAIELTQQLRKSATVDWQKRESVrarmrnlvrrllrrWKYPPDAAEEAIKLVLEQA  1065
              LR +A ELT+ ++ + +VDW KR+S +A+MR  VRRLL++  YPPD    A+  V+EQA
Sbjct  973   KLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQA  1032

Query  1066  EVLADG  1071
             E++A  
Sbjct  1033  ELMASN  1038

120) MM_0431 in NC_003901


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  777 bits (2939),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 479/1066 (45%), Positives = 748/1066 (71%), Gaps = 51/1066 (4%)

Query  2     NEDQLEQLCLEWFRDNSWDVLYGPDIAPDSDNPERKDYREVILKHYLQESLEKINLHLPF  61
             NED+LEQ+ LEW+   S D   G +I+  +  PERK  ++V+L + L+ +L KIN ++  
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62    NAIEQAI-ALVLKPESLDLITNNRAFHRLLLEGVPVE-YRKDDETIHDRAFLIDFENIAN  119
               IE+AI  L L   + +L+ NN +FH  L++G+ +E Y  ++++I +   ++DFE+  N
Sbjct  66    RFIEKAIHELTLEKSP-NLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQN  124

Query  120   NRFLAVNQFTIQGTKRPRRLDVVCFINGLPIAVLELKSPEDENVDIWDAFNQLQTYKDEI  179
             N FLAVNQFT+      +R D+V FINGLPI V+ELK++ +E V++ D+++QL+TYK  I
Sbjct  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  180   SDLFVFNEALVVSDGYNARIGALTANKERFSPWRAVKNEDDKPLLEWQLETLVRGFFDRE  239
             ++LF FNE LV SDG N++ G+LTAN +RF  WR+   E + +     L+ L+ G ++  
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPK  244

Query  240   MLLDYIRFFVLFENDG-GAIIKKIAGYHQFHAVREAVKATIIAAQDPKGVAEKRAKYGDE  298
              LLD IR+FVLF++DG G I K +A+YHQ+ AV  AV  +++A+ +              
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQ-------------  291

Query  299   VVPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQPEMNNPTLLVVTDRNDLDGQLFQTF--  356
                G  K+GV+WHTQGSGKS++M  ++GKL+Q   +NNPTL++VTDRNDLD QL+ TF  
Sbjct  292   ---GDGKGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVK  346

Query  357   ---SNAHELFKQTPVQANDRDELRQLLSERESGGIIFTTVQKFSPFEDEGAHPILNGRHN  413
                 ++  L++QTP QA+ R EL+ LLS  ESGGI+FTT+QKF P ++E   + L  R N
Sbjct  347   SKGRSGKGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKN  405

Query  414   IVVISDEAHRSQYGHKGRFIKVKNKDGNVTGNKLVFGFSQYMRDALPNASFIGFTGTPIA  473
             ++V++DEAHR+QYG ++++        +  G+ + +G+++Y+RDALPNA+F+GFTGTP+A
Sbjct  406   VIVMADEAHRTQYGFNAKY--------DDKGEGIKYGYAKYLRDALPNATFVGFTGTPVA  457

Query  474   LEDKDTRSVFGDYVSIYDIQDAVDDGATVAIYYESRLAKLDLNHA-EIERLSdqvedive  532
               DK+T+ VFG+Y+ +YD+ +AV DG+TV IYYESR+  L+L ++ +++    +  + + 
Sbjct  458   STDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSLDLD----EAYNDIT  513

Query  533   deedASNREKTKGGWSRLEKLVGAEPRIRQVAADLVGHFEARTESIDGKAMIVAMSREIC  592
             ++++   +++ K+ WSR+E L GA PR+  +A D++ HFE+R +++ GK+MIV+MSR I 
Sbjct  514   EDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIA  573

Query  593   VHLYDAIVELRPDWHDTDPSKGTIKIVMTGSASDRELLQPHIYNKQTRKRLEKRFKDNND  652
             V+LYD I+ L+P+WH  D  KG IK+VMTGS+SD   +Q HI  K+ R  LEKR KD ND
Sbjct  574   VDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVND  633

Query  653   PLKLVIVRDMWLTGFDVPCCHTMYIDKPMKGHNLMQAIARVNRVFKNKPGGLVVDYIGIA  712
              L+LVIVRDMWLTGFDVP  HTMYIDKPMKGHNLMQAIARVNRVFK+KPGGL+VDY+GIA
Sbjct  634   ELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIA  693

Query  713   NELKQALKTYTDARGRGEPTLRAEEAFSVLLEKMDVVHGLFHGFDYSEFVDQA----YKL  768
             + LK+ALK YT++ ++++ ++ ++ A  ++L K DV+++++  +DYS F  +     Y  
Sbjct  694   ESLKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYT  752

Query  769   LVPASNHILGL-DDGKKRFLDAVLAINKAYSLCGTLDEAKELRAEi----affsaikaai  823
             +  + + ++GL +D ++RF+ +V  + KA++LC+T   A+EL  EI    A  +++   +
Sbjct  753   ISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLL  812

Query  824   skfTYVDKKRTQEEMNSALKQILDNAVIAEGVVDVFQLAGLEKPDIGLLSDEFLEDVRQM  883
                     ++T  E+++ ++Q++ ++V++E+V+DV+Q  GLE+PD+++LSD+FL DV  +
Sbjct  813   QPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGL  872

Query  884   PYRNLAVELLEKLLKDNIKSKTSNNVVQEKKYSDRLEETLRKYNNRAIETAQVIEELIQM  943
               +N+AVELL++LLK+++KS    N    K++S+ L +++ KYN+R+IET++VIEELIQ+
Sbjct  873   KQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQL  932

Query  944   AKEFQEALKRNDELGLQPDEVAFYDALANNESAVRELGDEILKKIAVEITEKLRKSTIVD  1003
             AK++++  +R +ELGL++DE+AFYDAL ++E+A + + D  L+ IA E+T  ++ +  VD
Sbjct  933   AKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVD  992

Query  1004  WQVRDSVRAKLRILVRRTLQRYKYPPDKAPEAIELVLKQAEALSNS  1049
             W  RDS +AK+R+ VRR L++Y YPPD    A+E V+ QAE ++++
Sbjct  993   WSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

121) Shewana3_4244 in NC_008573


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  773 bits (2925),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 481/1090 (45%), Positives = 754/1090 (70%), Gaps = 68/1090 (6%)

Query  3     TEDQLEQLCLDWFTDQGYLYKNGYDIAPDGDSPERDDYHQVVLKQRLLERLEVLNPELPQ  62
              ED+LEQ+ L+W+   +Y YK+G +I+  G +PER    +VVL +RL   L  +N+++  
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  63    ESLDVVVNTVSTPDTPVLIKSNRGFHKYLIEGVPVEYTVYEDGETKTKHTHARLMDFTNP  122
               ++  ++ ++   +P L+ +N  FH  LI+G+ +E   Y+D E ++     +++DF +P
Sbjct  66    RFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIE--DYDD-EGQSIVEIVKIVDFEHP  122

Query  123   DNNEFLVVNQFTITGKKGNRRPDVVVFINGLPIAVIELKNPADEHADIWHAYNQLQTYKD  182
             +NN+FL VNQFT+      +RPD+V+FINGLPI VIELKN+++E  ++ ++Y+QL+TYK 
Sbjct  123   QNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKM  182

Query  183   EIPDLFVFNESLVVSDGWTARVGSLTANKERFLPWKTVSGEDDKPLWDYQLETMVKGFFK  242
              IP+LF FNE LV SDG  ++ GSLTAN +RF+ W++  GE + +     L+ +++G ++
Sbjct  183   RIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLN  242

Query  243   PDLLLDYIRYFVLFETDNDTVIKKI-AGYHQFHavraaveatvraKQADGELPLVAESMG  301
             P  LLD IRYFVLF+ D    I KI A+YHQ+ AV          K  D  L        
Sbjct  243   PKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVN---------KAVDRAL--------  285

Query  302   QYQVQATKGLDKIKPGSGKAGVVWHTQGSGKSISMVCYASKLLQQPAMNNPTIVVVTDRN  361
                      L     G GK+GV+WHTQGSGKS++MV +++KL+Q   +NNPT+V+VTDRN
Sbjct  286   ---------LASSGQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQ--MLNNPTLVIVTDRN  334

Query  362   DLDGQLFNTFGMAHET-----LKQVPSQADGRDKLRELLLSRQSGGIIFTTIQKFALLAE  416
             DLD QL++TF  +        L+Q P QA+ R  L+ LL S +SGGI+FTT+QKF    +
Sbjct  335   DLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLL-SVESGGIVFTTMQKFEPEQN  393

Query  417   ETEHPVLSTRANIVVVSDEAHRSQYGNKSKLVDVKDANGNVISQKFVYGYSKYMRDALPN  476
             ET  + L+ R N++V++DEAHR+QYG ++K     D +G+ I     YGY+KY+RDALPN
Sbjct  394   ETIMAALTERKNVIVMADEAHRTQYGFNAKY----DDKGEGIK----YGYAKYLRDALPN  445

Query  477   ASFIGFTGTPIAMDDKDTRGVFGEYVSIYDIQDAVDDGATVPIYYESRLAKLDINQAEIE  536
             A+F+GFTGTP+A  DK+T+ VFG+Y+ +YD+ +AV DG+TV IYYESR+  L++ Q+   
Sbjct  446   ATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQS---  502

Query  537   QLN-DQiedeigedeeTASREKIKSQWATLEKLVGAEPRIQQVAQDLVNHFTTRTETFPG  595
              L+ D+  ++I ED+E   ++++KS+W+ +E L GA PR++ +A+D+++HF TR ++  G
Sbjct  503   -LDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKG  561

Query  596   KAMIVAMSREICVDLYNAIVAIKPEWHNDDPAKGAIKIVMTGSASDKPKMQPHIHDKKTK  655
             K+MIV+MSR I VDLY+ I+ +KPEWH+DD  KG IK+VMTGS+SD    Q HI  KK +
Sbjct  562   KGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRR  621

Query  656   KLFEARYKDTQDELQLVIVRDMWLTGFDAPCCHTMYVDKPMKGHNLMQAIARVNRVFKDK  715
              ++E R KD +DELQLVIVRDMWLTGFD P  HTMY+DKPMKGHNLMQAIARVNRVFKDK
Sbjct  622   SVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDK  681

Query  716   PGGLVVDYIGIANELKNALKTYTNSQGKGQPTVDTAEAFSVLMEKVDIVRGMFATPVDGK  775
             PGGL+VDY+GIA+ LK+ALK YT+S+ ++Q ++DT  A  +++ K D++++M+     +K
Sbjct  682   PGGLIVDYVGIAESLKEALKEYTESD-QAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSK  740

Query  776   VFNYRPDFETDALRLLPGAVNHLSGLSHTDSKGKEVRDGKRRFLDVMAALGKAYSLCNTM  835
                + ++  ++    ++ +++ + GL++         D ++RF+  ++ LGKA++LC T 
Sbjct  741   ---FNSEKKSERYYTISNTMDYVIGLGE---------DERQRFIKTVTELGKAFALCATE  788

Query  836   DETRGYKNEIAFYSAIKAAFMK----HSTVDKKRTDEERNTALKQILDNAVIADGVDDIF  891
               ++  ++EIAF+ A+KA+++K          ++T  E ++ ++Q++ ++V++++V D++
Sbjct  789   PTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVY  848

Query  892   SMVGLDKPNIGLLSEEFLEDVKNMKEKNLAVELLEKLLRDEVKARMKNDVVQEKKYSDRI  951
               +GL++P++++LS++FL DV  +K+KN+AVELL++LL+++VK+ MK +    K++S+ +
Sbjct  849   QTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEML  908

Query  952   LTTLNKYHNRSIETAQVIEELIQWAKEMQEDAEMVDKLNLSVDEMAFYRALVENESSVRE  1011
               ++NKY++RSIET++VIEELIQ AK+++++ +  + L L+ DE+AFY ALV +E++ + 
Sbjct  909   GNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKA  968

Query  1012  LGNDDLRNLAIELTQQLRKSATVDWQKRESVrarmrnlvrrllrrWKYPPDSAEEAIKLV  1071
             + +  LR +A ELT+ ++ + +VDW KR+S +A+MR  VRRLL++  YPPD    A+  V
Sbjct  969   MEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQV  1028

Query  1072  LEQAEVLADG  1081
             +EQAE++A  
Sbjct  1029  VEQAELMASN  1038

122) hsdR in NC_010617


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  773 bits (2927),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 456/1044 (44%), Positives = 747/1044 (72%), Gaps = 24/1044 (2%)

Query  4     FNENVVEQAALEYFAELGYRRVHGPDIAPGEPGAERESYEDVMLWGHVRDALRRINRGAD  63
             FNE+ +EQ  LE +  L+Y    G +I+    ++ER S  DV+L  ++  ALR+IN + +
Sbjct  5     FNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIH  64

Query  64    AALVAEAVKTVQRAESQSPIDENARLHKLITEGVPVEHRGDDGLLRTTRLWLMDFDEPEN  123
             + ++  A+  +    S + +++N  +H  + +G+ +E+ +D+G      + ++DF++P+N
Sbjct  65    PRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQN  124

Query  124   NDWVAVSQFTIVENGKNRRPDVLVMVNGLPLSLLELKNPAAEHATLKSAWNQVQTYRHDI  183
             ND +AV+QFT+V+ +  +RPD+++ +NGLP+ ++ELKN++ E   +  + +Q++TY+  I
Sbjct  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  184   PSVFVPNAVTVISDGTSAAMSSYSGAFEHYAPWKTIEG-REVVSNRPALEVLIKGVFEPK  242
             P +F  N V V SDG ++  +S ++ ++++  W++ +G  E  S+ ++L+VLI+G+++PK
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPK  244

Query  243   RFLDLLKNFVVFSDETVTDKSTGQPTRALVKRVAKYHQYWAVNAAVESTVQASSPDGDRR  302
              +LDL++ FV+F D+     + G+ ++ L    A YHQY AVN AV+ ++ ASS +GD +
Sbjct  245   TLLDLIRYFVLFQDD-----GKGHISKIL----AAYHQYYAVNKAVDRALLASSGQGDGK  295

Query  303   GGVVWHTQGSGKSFEMVFYAAKIMRDPRMANPTLVFITDRNDLDDQLFGETFAPAR----  358
             GGV+WHTQGSGKS+ MVF+++K+++   + NPTLV++TDRNDLD+QL++ TF  ++    
Sbjct  296   GGVIWHTQGSGKSLTMVFFSGKLIQ--MLNNPTLVIVTDRNDLDNQLYS-TFVKSKGRSG  352

Query  359   --ILPETPVQAATRSDLRAKLKRASGGIVFTTLQKFAPGEDGDTNPVLTDRRNVIVIADE  416
               +L +TP QA TR +L++ L   SGGIVFTT+QKF P ++    + LT+R+NVIV+ADE
Sbjct  353   KGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADE  412

Query  417   AHRSQYGFSETLDRHGR-LKSGLAKHMRDALPGATYLGFTGTPIESKDKSTRAVFGDYVD  475
             AHR+QYGF+   D  G  +K G AK +RDALP AT++GFTGTP+ S DK+T+ VFG+Y+D
Sbjct  413   AHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYID  472

Query  476   VYDLTRAVEDGATVRIFYESRLAKIELSEVDHAALDELADEITESVEEDTATAAKSRWSR  535
             VYD+T+AV DG+TV+I+YESR+  ++L++     LDE  ++ITE  EED     KS+WSR
Sbjct  473   VYDMTQAVADGSTVKIYYESRVIPLNLPQ--SLDLDEAYNDITEDQEEDVKQRLKSKWSR  530

Query  536   LEAVVGAEARLDLVARDIVEHWEKRRESLFGKGMIVTMSRRIAVRLYEKIVALRPDWHSD  595
             +EA+ GA +R++ +A+DI++H E R++++ GKGMIVTMSRRIAV LY+ I+ L+P+WHSD
Sbjct  531   IEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSD  590

Query  596   DPAQGKIKVVMTGSASDPAEFQPHIHSKDVRKDLKLRAKNADDPLELVIVRDMWLTGFDA  655
             D  +G IKVVMTGS+SDP+ FQ HI +K  R  L  R K+ +D L+LVIVRDMWLTGFD 
Sbjct  591   DDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDV  650

Query  656   PSMHTMYVDKTMQGAGLMQAIARVNRTFRDKPGGLIVDYIGVFANLQNALSEYSPSDREQ  715
             PSMHTMY+DK M+G  LMQAIARVNR F+DKPGGLIVDY+G+  +L++AL EY+ SD+ Q
Sbjct  651   PSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQ  710

Query  716   AGVPIDEMVQVMLEKHDIVRGLLHGVQFDSSPELTASQRLNEYAKVLDFVMA-DPDRTSR  774
             +++  D  V++ML K D+++++L  +++        S+R    ++ +D+V++ + D   R
Sbjct  711   TAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQR  770

Query  775   FNDQVlalakafalagaRDEAAAIRNNVRLFTDVRAAILK-IQNPDSGRGGSGAVGIDTA  833
             F   V  L+KAFAL ++   A  + +++ +F  V+A+++K +Q P  G+    +  +++ 
Sbjct  771   FIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAE  830

Query  834   LGQLLNEAVAADQVVDVYKLAGVDTPDLSILSDEFLNSFAEKDKPNLQMGLLHRLLNDQI  893
             + QL++++V +++V+DVY+  G++ PDLSILSD+FL+      + N+ + LL+RLL++Q+
Sbjct  831   INQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQV  890

Query  894   RTVQRTNIVQARKFSELLDEAINRYTNRSLTTAEIIAELVKLAKQMRDDQKRHDDLGLSS  953
             +++ +TN   +++FSE+L+++IN+Y +RS+ T+ +I EL++LAK+++++Q+R ++LGL+S
Sbjct  891   KSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNS  950

Query  954   AEVALYDAIAQNDSAVLEMGDETLKKIAVDVVWAVRNSVVIDWDQKEsvrasmrssvrrI  1013
              E+A+YDA+  +++A   M D  L+ IA ++  +V++++ +DW +++S +A MR +VRR+
Sbjct  951   DEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRL  1010

Query  1014  LAKYDYPPDAEDEAVNLVLEQAEL  1037
             L KY+YPPD +  AV+ V+EQAEL
Sbjct  1011  LKKYGYPPDLQKMAVEQVVEQAEL  1034

123) Desal_2732 in NC_012881


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  770 bits (2913),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 470/1052 (45%), Positives = 740/1052 (71%), Gaps = 35/1052 (3%)

Query  3     NEAALEKLAISWFEDEGYENHHGPDLNPESDGSGERSSFDDVLLLSPLRSAVSCINPQLP  62
             NE  LE++ + W+E  +Y+   G +++  ++ + ER S  DV+L   L  A+  IN+++ 
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISM-TGLAPERKSDKDVVLHERLEKALRKINSDIH  64

Query  63    SSAVDDVIHQLTTLSHPVSVKANQLFHRLLRNGLDV-SYKRDGETIADKAFLIDFQEWQN  121
             +  ++  IH+LT    P  +  N  FH  L NG+++  Y  +G++I +   ++DF++ QN
Sbjct  65    PRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQN  124

Query  122   NIFWVVDQLTLQGTKDKRRPDLIVYVNGLPLAVIELKSPVDDSVGVDEAFNQLQTYRHEL  181
             N F  V+Q+T+      +RPD+++++NGLP+ VIELK++ +++VGV+++++QL+TY+  +
Sbjct  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  182   PDLAMFNEALIASDGIKARVGSLTASREWFLPWRYRKSEDDRPSFEYELKNVVEGFFDRK  241
             P+L  FNE L++SDGI+++ GSLTA+ ++F+ WR + +E + +S    L  +++G ++ K
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPK  244

Query  242   LFLEYVRDFVLFESDDTSTIKKI-AGYHQFHGVRHAVEAIVQASSAAASDEQRGRGGVIW  300
              +L+ +R FVLF+ D+ + I KI A+YHQ+ +V  AV+  + ASS+ +     G+GGVIW
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGD----GKGGVIW  300

Query  301   HTQGSGKSISMCCLAGKLIRHPELTNPTLVVVTDRNDLDGQLYETFCK-----AGDLLSD  355
             HTQGSGKS++M  ++GKLI+   L NPTLV+VTDRNDLD QLY TF K     + +LL +
Sbjct  301   HTQGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQ  358

Query  356   TPVQVEDRTSLRKVLNERQSGGIIFTTIQKFSLSDGETVFPALSDRRNIIVIADECHRSQ  415
             TP Q E R  L+ +L+  +SGGI+FTT+QKF   + ET+ +AL++R+N+IV+ADE HR+Q
Sbjct  359   TPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQ  417

Query  416   YGFQSKLDEKKGAFTVGYAQHIRDALPNATFTGFTGTPVSLEDKDTQAVFGEYVSIYDIE  475
             YGF++K D+K  ++  GYA+ +RDALPNATF GFTGTPV+  DK+TQ VFG+Y+ +YD+ 
Sbjct  418   YGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMT  477

Query  476   QAQQDGATVPLFYESRLAKLDLNKEELPVIddtvdeltedeeSAQAERTKGRWAALAKLV  535
             QA  DG+TV ++YESR+  L+L  + L + +   D   ++EE  + +R K++W+ +  L 
Sbjct  478   QAVADGSTVKIYYESRVIPLNLP-QSLDLDEAYNDITEDQEEDVK-QRLKSKWSRIEALA  535

Query  536   GSEPRLKQIAEDLVQHFEARLQVIDGKAMIVCMSREICVKMFDALTAIRPEWTGSKMSDG  595
             G+ PR+  +A D++QHFE+R Q + GK+MIV MSR I V ++D +  ++PEW +      
Sbjct  536   GAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSD-----  590

Query  596   TYDPADGGIRIIMTSNAADPESMQNHSYSKQQKKALEKRFKDPADPLKIVIIRDMWLTGF  655
               D   G I+++MT++++DP S Q H  +K+++  LEKR KD  D L++VI+RDMWLTGF
Sbjct  591   --DDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGF  648

Query  656   DAPCAHTMYIDKPMKAHNLMQAIARVNRVFKGKPGGLVVDYIGIASELKNALHTYTNSGG  715
             D P  HTMYIDKPMK+HNLMQAIARVNRVFK+KPGGL+VDY+GIA  LK+AL  YT+S+ 
Sbjct  649   DVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQ  708

Query  716   RGGRPTIDVTEALFILKEKLQVARDIFHEFDYSEYAT-KAVE---LLPSAADYVVA-NEN  770
               ++ +ID   A+ ++  K +V +D++ ++DYS + + K  E    ++++ DYV++  E+
Sbjct  709   --AQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGED  766

Query  771   RKKEFFDVVVAMTRAQALCGTLDEAVAFRDEITFFQAVK----MFISKATKPKKKLSQQE  826
              ++ F+  V  + +A ALC+T   A  + DEI+FF+AVK     ++  +   K + +  E
Sbjct  767   ERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAE  826

Query  827   KEAVLNQLLAKAVVPEGVDDIFALAGLDKPDISILSDEFLEDVRHMEHRNLAVELLQKLI  886
              EA +NQL++++VV E+V D++   GL++PD+SILSD+FL DV  + ++N+AVELL++L+
Sbjct  827   VEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLL  886

Query  887   NDEVHSKSRRNETQRKKFSERLKASLTKYRNRAIETAQVIEEMIQLAKELNEALKRGEKL  946
             +++V S  + N T  K+FSE L  S+ KY +R+IET++VIEE+IQLAK++++  +RG+ L
Sbjct  887   KGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNEL  946

Query  947   GLNSSEIAFYDALELNESAVRDLGDEVLKAIARELTQKLRNSVTVDWQHKESVRAKMRNL  1006
             GLNS EIAFYDAL  +E+A + + D  L+AIA+ELT+ ++++++VDW  ++S +AKMR  
Sbjct  947   GLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVA  1006

Query  1007  VRRILKRYKYPPDAQKEAVEKVLSQAEELADE  1038
             VRR+LK+Y YPPD QK AVE+V+ QAE +A +
Sbjct  1007  VRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

124) Psest_4044 in NC_019936


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  767 bits (2901),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 452/1050 (44%), Positives = 733/1050 (70%), Gaps = 45/1050 (4%)

Query  14    WFQQVGWRFAHGPDIAPDSSAPERTDYRQVVlrerllaalarINPQIPAAALEQAVHALQ  73
             W++ ++  +  G +I+  + APER   ++VVL+ERL  AL +IN++I +  +E+A+H L 
Sbjct  17    WLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHPRFIEKAIHELT  76

Query  74    TVSEPQMVVRNRSVHRLLLSGVAVQ-FEIGEQKKQDWVYFIDFAQPSNNDFLVVNQFTIT  132
                 P+++  N + H  L++G+ ++ ++   Q   + V ++DF +P NNDFL VNQFT+ 
Sbjct  77    LEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNNDFLAVNQFTVV  136

Query  133   GTRQPRRPDLIAFVNGLPLAVVELKNPANEQTDVWDAFNQLQTYKDEISDLFNSNAALVV  192
                  +RPD++ F+NGLP+ V+ELKN++NE  +V D+++QL+TYK  I++LF  N  LV 
Sbjct  137   NGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVT  196

Query  193   SDGWTARVGSLTANAERMLPWRTVLNEDDRPRLQMELETVVRGFFKPELFLDYVRHFVLF  252
             SDG  ++ GSLTAN +R + WR+   E + +     L+ ++ G ++P  +LD +R FVLF
Sbjct  197   SDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPKTLLDLIRYFVLF  256

Query  253   EQDGDSIVKKI-AGYHQFHAVREAVRATVIASQHADKGVLAIHEERATYAKEVKPGSRKA  311
             ++DG + + KI A+YHQ+ AV  AV          D+++LA   +          G  K+
Sbjct  257   QDDGKGHISKILAAYHQYYAVNKAV----------DRALLASSGQ----------GDGKG  296

Query  312   GVVWHTQGSGKSITMACYAGKLLQQSEMKNPTLVVVTDRNDLDGQLFATFC-----AASD  366
             GV+WHTQGSGKS+TM  ++GKL+Q   ++NPTLV+VTDRNDLD QL++TF      ++ +
Sbjct  297   GVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKG  354

Query  367   LLKTTPQQAGDRDELREMLASREAGGIIFTTVQKFALQEDEEKHPLLSDRTNIVVISDEA  426
             LL+ TP+QA  R EL+ +L+  E+GGI+FTT+QKF  +++E   + L++R N++V++DEA
Sbjct  355   LLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEA  413

Query  427   HRSQYGSKGRLDTKTGKYVFGYAKHLHDALKNATFLGFTGTPIALEDRDTREVFGDYVSI  486
             HR+QYG +++ D K     +GYAK L+DAL NATF+GFTGTP+A  D++T+ VFG+Y+ +
Sbjct  414   HRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDV  473

Query  487   YDIQDAVDDGATVPIFYESRLAKLDVNQA-EIDTLNeqveevvedeedivSREKTKGEWA  545
             YD+ +AV DG+TV I+YESR+  L++ Q+ ++D       + + ++++   +++ K+ W+
Sbjct  474   YDMTQAVADGSTVKIYYESRVIPLNLPQSLDLDE----AYNDITEDQEEDVKQRLKSKWS  529

Query  546   ALEKLVGSEPRLQQVARDLIEHFEARVSVADGKAMIVCMSRDICAHLYNAIVSLRPDWHS  605
              +E L G+ PR++ +A+D+I+HFE+R     GK+MIV MSR I  +LY+ I+ L+P+WHS
Sbjct  530   RIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHS  589

Query  606   DDPEQGAIKIVMTGSAADKALLQPHLYSKQVKKRLETRFKDVKDPLKLVIVRDMWLTGFD  665
             DD ++G IK+VMTGS++D + +Q H+ +K+ +  LE R KDV+D L+LVIVRDMWLTGFD
Sbjct  590   DDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFD  649

Query  666   APCCHTMYIDKPMKGHNLMQAIARVNRVFKNKPGGLVVDYIGIANELKAALKTYTDAKGK  725
              P  HTMYIDKPMKGHNLMQAIARVNRVFK+KPGGL+VDY+GIA+ LK ALK YT++ ++
Sbjct  650   VPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQ  708

Query  726   GDPTHNSAEALAVLLEKMDIVRGMMHGFDYSAFETQPLE----LLVPVSNHILGL-KDGK  780
             ++ + ++  A+ ++L K D++++M+  +DYS F+++        +    + ++GL  D +
Sbjct  709   AQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDER  768

Query  781   TRFLDTMLAVTKAFSLCGTLDEAAPLRKEIAFFSAIKAAITKFTTVDK----KRSDAEKN  836
              RF+ T+  + KAF+LC+T   A  L  EIAFF A+KA++ K+    K    +++ AE +
Sbjct  769   QRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVE  828

Query  837   SALKQILDNAITSDGVDDIFALAGLDKPNIGLLSDEFLEDVRQMESRNLAVELLEKLLRD  896
             + ++Q++ +++ +++V D++   GL++P++++LSD+FL DV  +  +N+AVELL++LL++
Sbjct  829   AEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKG  888

Query  897   EVKARARNNVVQEKKYGDRLLETLRRYHNRAIETAQVIEELIQMAKEFKAALEREAALGL  956
             +VK+  + N    K++++ L +++ +Y++R+IET++VIEELIQ+AK++K   +R   LGL
Sbjct  889   QVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGL  948

Query  957   SHDEIAFYDALANNESAVRELGDETLKKIAAELTEKLRASTTIDWQVRESVRAKLRILVR  1016
             + DEIAFYDAL ++E+A + + D  L+ IA ELT  ++ + ++DW  R+S +AK+R+ VR
Sbjct  949   NSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVR  1008

Query  1017  RCLQRWKYPPDQQSDAVELVLKQAESLSNE  1046
             R L++  YPPD Q  AVE V+ QAE ++++
Sbjct  1009  RLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

125) Nwat_1306 in NC_014315


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  766 bits (2900),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 461/1065 (44%), Positives = 739/1065 (70%), Gaps = 49/1065 (4%)

Query  2     TEEQLEQQCLQWFAEGGWEIAHGPDLAPDGEAPERADYRQVLLLADLEAAIKRINPHLSQ  61
              E++LEQ  L+W+   + +   G +++  G APER   ++V+L   LE A+++IN+++  
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62    SAVEQAIAVVRKPESLDVVISNRVFHRLLLNGVPVE-YKHDDKLVHDRALLVDFRDLTAN  120
               +E+AI  +    S +++ +N  FH  L+NG+ +E Y ++++ + +   +VDF +   N
Sbjct  66    RFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNN  125

Query  121   RFRAINQFTLAGSRQLRRPDVICFINGLPLAVLELKSPGAENANIWDAYHQIQTYKDEIP  180
              F A+NQFT+  +   +RPD++ FINGLP+ V+ELK++  E   + D+YHQ++TYK  IP
Sbjct  126   DFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  181   DLFAYNEAAIISDGYGARVGSLTASQERYMPWRTIKHEDDKPLLEWQLETMVRGFFDREL  240
             +LF++NE  + SDG  ++ GSLTA+ +R+M WR+   E + +     L+ ++ G ++   
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPKT  245

Query  241   FLDYLRYFVIFEADSDKLIKKI-AGYHQFHGVREAVKATVIAAQAPEQGYWAKEKRATYG  299
             +LD +RYFV+F+ D+   I KI A+YHQ+ +V  AV  +++A+ +  +G           
Sbjct  246   LLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDG-----------  294

Query  300   DEVQPGSKKAGVVWHTQGSGKSLSMCCYAGKLLQQPGMNNPTLMVVTDRNDLDGQLFATF  359
                     K+GV+WHTQGSGKSL+M  ++GKL+Q   +NNPTL++VTDRNDLD QL++TF
Sbjct  295   --------KGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTF  344

Query  360   -----SAARELLKQEPVQADDRDTLRRLLSERESGGIIFTTVQKFALLNDETGHPVLNDR  414
                   +++ LL+Q P QA+ R  L+ LLS  ESGGI+FTT+QKF   ++ET  + L +R
Sbjct  345   VKSKGRSGKGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTER  403

Query  415   HNIVVISDEAHRSQYGLKATLK-RDGSYTFGYARHLRDALPNASFIGFTGTPIEREDRDT  473
              N++V++DEAHR+QYG++A    ++ +  +GYA+ LRDALPNA+F+GFTGTP+   D++T
Sbjct  404   KNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNT  463

Query  474   RAVFGDYVSIYDIQDAVDDGATVPIFYESRLAKLDLNRDLIGELSeqveemveddedvGS  533
             + VFG+Y+ +YD+ +AV DG+TV I+YESR+  L+L + L  +L E  +++ ED+E+ + 
Sbjct  464   QMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSL--DLDEAYNDITEDQEE-DV  520

Query  534   REKTKGEWSRLEKLVGAGPRLKQVAEDLVSHFETRSRTLSGKAMIVAMSREICVHLYNEI  593
             +++ K+ WSR+E L GA PR+  +A D++ HFETR +++ GK+MIV+MSR I V+LY+EI
Sbjct  521   KQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEI  580

Query  594   VALRPAWHDDDPEKGAIKVVMTGSASDRALLQPHIYNKQTKKRFEKRFKDSNDSLKLVIV  653
             + L+P WH DD +KG IKVVMTGS+SD + +Q HI  K+ +  +EKR KD ND L+LVIV
Sbjct  581   IRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIV  640

Query  654   RDMWLTGFDAPCCHTMYVDKPMKGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQAL  713
             RDMWLTGFD P  HTMY+DKPMKGHNLMQAIARVNRVFKDKPGGL+VDY+GIA+ LK+AL
Sbjct  641   RDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEAL  700

Query  714   KTYTDAKGKGSPTHSAEEAYAILLEKLAIIHGLFAPGPQGQGFNYNGFETGPHK----LL  769
             K YT++ +++  +  ++ A  ++L K  +I++++        ++Y+ F++         +
Sbjct  701   KEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLY------NLDYSKFNSEKKSERYYTI  753

Query  770   VPTANYVLSL-EDGKKRFLDTVLAMNKAFSLCATLDEAQALQKEVAFWSQVKIAITKFTS  828
               T +YV++L ED ++RF+ TV  + KAF+LCAT   AQ L+ E+AF   VK ++ K+  
Sbjct  754   SNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQ  813

Query  829   VDK----KLTEEDKNTALKQILDNALVAEGVTDVFALCGLDRPNIGLLSDEFLEDVRQMP  884
               K    + T  + ++ ++Q++ +++V+E+V DV+   GL++P++++LSD+FL DV  + 
Sbjct  814   PPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLK  873

Query  885   YKNFAVELLEKLLKDNIKARTRSNVVQEKKYADRLQATLRQYNNRGIETAQVMEELIAMA  944
              KN AVELL++LLK+++K+  ++N    K++++ L  ++ +YN+R+IET++V+EELI +A
Sbjct  874   QKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLA  933

Query  945   KQFQAELERDEALGLNLDEVAFYDALANNESAVRELGDETLKKIAVEITDKLRKSTTVDW  1004
             K+++ E +R++ LGLN DE+AFYDAL ++E+A + + D  L+ IA E+T  ++ + +VDW
Sbjct  934   KDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDW  993

Query  1005  QVRESVRAKLRILVRRTLQRYQYPPDKAPEAVELILQQAEVLSDE  1049
               R+S +AK+R+ VRR L++Y YPPD    AVE +++QAE+++ +
Sbjct  994   SKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

126) VEJY3_11755 in NC_016613


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  765 bits (2895),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 483/1086 (45%), Positives = 763/1086 (71%), Gaps = 70/1086 (6%)

Query  3     TEDQLEQQCLDWFKELGYQYQNGYDIAPDGNTPERENYQQVTLQARLVSALETLNPNVPS  62
              ED+LEQ  L+W+  L+Y+Y++G +I+  G +PER + ++V L+ RL  AL  +N+++ +
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  63    DTLIEVAKTVATPQTPILIKNNKAFHQYLIEGVPVE-YSVMEHEQWVTKHTHVRLIDFDD  121
               +      ++  ++P L+ NN +FH+ LI+G+ +E Y   ++ Q +     V+++DF++
Sbjct  66    RFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYD--DEGQSIV--EIVKIVDFEH  121

Query  122   RENNEFLVVNQFTITGTKVNRRPDVIVFINGLPMAVIELKNPADDHADIWNAYNQIQTYK  181
              +NN+FL VNQFT+      +RPD+++FINGLP+ VIELKN++++  ++ ++Y+Q++TYK
Sbjct  122   PQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYK  181

Query  182   EEIADLFVFNEALVISDGWTARVGSLTANKERFLPWKTIEDEDDKPLLEFQLETMVRGFF  241
               I++LF FNE LV SDG  ++ GSLTAN +RF+ W++ ++E + +     L+ ++ G +
Sbjct  182   MRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGML  241

Query  242   KPELLLDYIRYFVLFENDGDKIIKKI-AGYHQFHavraavkatviaattSDQVTEPRANY  300
             +P  LLD IRYFVLF++DG   I KI A+YHQ+ AV                 +  RA  
Sbjct  242   NPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNK---------------AVDRALL  286

Query  301   ANTVVPGSKKAGVVWHTQGSGKSISMVCYASKLLQQPEMNNPTLVVVTDRNDLDGQLFNT  360
             A++   G  K+GV+WHTQGSGKS++MV +++KL+Q   +NNPTLV+VTDRNDLD QL++T
Sbjct  287   ASSG-QGDGKGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYST  343

Query  361   FTMAQET-----LKQIPQQAEdrdslrdlllnrQSGGIIFTTVQKFALLDEEMAHPILSE  415
             F  ++       L+Q P+QAE R  L+ LL   +SGGI+FTT+QKF   ++E   + L+E
Sbjct  344   FVKSKGRSGKGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTE  402

Query  416   RSNIVVVSDEAHRSQYGNKARLVDVKNEGGNVVDQRYVYGYSKYMRDALPNAAFIGFTGT  475
             R N++V++DEAHR+QYG +A+  D K EG +       YGY+KY+RDALPNA+F+GFTGT
Sbjct  403   RKNVIVMADEAHRTQYGFNAKYDD-KGEGIK-------YGYAKYLRDALPNATFVGFTGT  454

Query  476   PISMDDKDTRGVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDINQD-EIEALNDQVee  534
             P++  DK+T+ VFG+Y+ +YD+ +AV DG+TV IYYESR+  L++ Q  +++   +++ E
Sbjct  455   PVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITE  514

Query  535   eigedeetesreKIKSQWSALEKLVGAEPRIKQVAKDLVEHFTTRCETFPGKAMIVAMSR  594
             +  ED       ++KS+WS +E L GA PR+  +AKD+++HF TR ++  GK+MIV+MSR
Sbjct  515   DQEEDVKQ----RLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSR  570

Query  595   EICVDLYDAIVAIKPEWHSDDPNKGAIKIVMTGSAADKAKMQPHIHDKKTKKLFEKRYKD  654
              I VDLYD I+ +KPEWHSDD +KG IK+VMTGS++D +  Q HI  KK + ++EKR KD
Sbjct  571   RIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKD  630

Query  655   TDDELQLVIVRDMWLTGFDAPCCHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLVVDYI  714
              +DELQLVIVRDMWLTGFD P  HTMYIDKPMKGHNLMQAIARVNRVFKDKPGGL+VDY+
Sbjct  631   VNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYV  690

Query  715   GIANELKNALKTYTNSQGKGQPTVDTAEAFAVFMEKIDVIRGMFATPVDGDVLNYRPDFE  774
             GIA+ LK+ALK YT+S+ ++Q ++DT  A  + + K DVI++M+        L+Y + F+
Sbjct  691   GIAESLKEALKEYTESD-QAQTAIDTDKAVELMLLKYDVIQDMLYN------LDY-SKFN  742

Query  775   TKPLQ----LLPGAVNHISGLSHRNSKGEEVRDGKRRFLDVMAALMKAFSLCNTLDEVDG  830
             +         ++ +++ + GL++         D ++RF+  ++ L KAF+LC T    + 
Sbjct  743   SEKKSERYYTISNTMDYVIGLGE---------DERQRFIKTVTELGKAFALCATEPTAQE  793

Query  831   YKSEIAFYGAIKTAFLK-----HSTVDKKRSDELRNSALRQILNNAIVADGVDDIFKTVG  885
              + EIAF+ A+K++++K          +K + E+ ++ + Q++++++V+++V D+++T+G
Sbjct  794   LNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEV-EAEINQLVSQSVVTEDVIDVYQTLG  852

Query  886   LDKPNIGLLSEEFLEDVKHMKEKNLAVELLEKLLRDEVKARMKNDVVQEKKFSERIMSTL  945
             L++P++++LS++FL DV  +K+KN+AVELL++LL+++VK+ MK +    K+FSE + +++
Sbjct  853   LEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSI  912

Query  946   QKYHNRSIETAQVIEELIQWAKEMQADAEMMDKLNLSTDEIAFYRALVTNEASVRTLGDD  1005
             +KY++RSIET++VIEELIQ AK+++ + +  + L L++DEIAFY ALV++E++ +++ D 
Sbjct  913   NKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDK  972

Query  1006  NLRQLAIELTHQLRKSATVDWQKRESVrarmrnlvrrllrrWKYPPDAAEEAIKLVLDQA  1065
             +LR +A ELT  ++ + +VDW KR+S +A+MR  VRRLL++  YPPD    A+  V++QA
Sbjct  973   KLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQA  1032

Query  1066  EVLADG  1071
             E++A  
Sbjct  1033  ELMASN  1038

127) hsdR3 in NC_022362


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  763 bits (2888),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 458/1024 (45%), Positives = 740/1024 (73%), Gaps = 53/1024 (5%)

Query  31    RATDEVLLETSLVNALCRLNPQLDLSKANEIYKELKSKNHLSLLDSNENFHYKLVNGVNI  90
             ++  +V+L+  L +AL ++N++++    +    EL   +  +LL++N  FH +L+NG++I
Sbjct  41    KSDKDVVLHERLEKALRKINSDIHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEI  100

Query  91    NT-TKDGESRADIINLIDFNNASNNEFIATNQLSITEAKENKIPDVVLYINGIPLVLMEL  149
             +    +G+S  +I++++DF+++ NN+F+A NQ+++ ++   K PD+VL+ING+P+V++EL
Sbjct  101   EDYDDEGQSIVEIVKIVDFEHPQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIEL  160

Query  150   KSPSDENATINSAYNQINTYKQTIPSIFTYNAFCVISDGYFARAGSISADFSRFMAWKSS  209
             K++++E   ++ +Y+Q++TYK  IP +FT+N   V SDG  ++AGS++A++ RFM+W+S 
Sbjct  161   KNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSK  220

Query  210   DGINYAPNKSLEIKTLIDGMLNPKTLLDIICNFIVFEKEQIRDLNGILSIKTTKKIACYH  269
             DG   +++    +  LI+GMLNPKTLLD+I  F++F+ +   +++ IL        A YH
Sbjct  221   DGETESSSSLASLDVLINGMLNPKTLLDLIRYFVLFQDDGKGHISKIL--------AAYH  272

Query  270   QYYAVNKAISRTITASSKDGDKKGGVVWHTQGSGKSLSMVFYSAKAIKALNNPTILLITD  329
             QYYAVNKA+ R++ ASS +GD KGGV+WHTQGSGKSL+MVF+S+K I+ LNNPT++++TD
Sbjct  273   QYYAVNKAVDRALLASSGQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVIVTD  332

Query  330   RNDLDDQLFGTFASCAN-----LLRQEPKQANDKEHLKELLRVASGGVVFTTIQKFSPE-  383
             RNDLD+QL++TF          LLRQ PKQA+ + +LK LL V SGG+VFTT+QKF PE 
Sbjct  333   RNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQ  392

Query  384   NDNVFECLSLRDNIIVIADEAHRTQYGFDAKVVEEKSKSGDVLGQKIVYGFAKYLRDALP  443
             N+ +   L+ R N+IV+ADEAHRTQYGF+AK  ++K       G+ I YG+AKYLRDALP
Sbjct  393   NETIMAALTERKNVIVMADEAHRTQYGFNAKY-DDK-------GEGIKYGYAKYLRDALP  444

Query  444   NATYIGFTGTPIESHDINTPAVFGNYIDIYDISRAVEDGATVSIYYESRLAKIELSEEGK  503
             NAT++GFTGTP+ S D NT  VFGNYID+YD+++AV DG+TV IYYESR+  ++L++ + 
Sbjct  445   NATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQ-SL  503

Query  504   RLVNELDEKLENQDSQ-----KAKATKLEALVGSTSRLKQIAKDIVKHFETRSSKLGGKG  558
              L +  ++  E+Q+ +     K+K +++EAL G+ +R+  +AKDI++HFETR   + GKG
Sbjct  504   DLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKG  563

Query  559   MIVSISRSVAIKLYDEIIKIRPSWHSDELSSGAIKVVMTSSSSDGVEFSKHHTSKIQKQF  618
             MIV++SR +A+ LYDEII+++P WHSD+   G IKVVMT+SSSD   F +H  +K ++  
Sbjct  564   MIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSV  623

Query  619   LANRMRNIDDELKLVIVVDMWLTGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPS  678
             L +RM++++DEL+LVIV DMWLTGFDVPS+HT+YIDKPMKGHNLMQAIARVNRV+KDKP+
Sbjct  624   LEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPG  683

Query  679   GLVVDYLGIASDLKKALSFYSESGGKGDIITTQEDAVKVMIEKLEIVEQML-PNDY----  733
             GL+VDY+GIA  LK AL  Y+ES+     I T + AV +M+ K +++++ML   DY    
Sbjct  684   GLIVDYVGIAESLKEALKEYTESDQAQTAIDT-DKAVELMLLKYDVIQDMLYNLDYSKFN  742

Query  734   -----EKYFELDTGAKLEYILDVEEHILSNEDGKNRFIKEFAALDKAYTIAMPHEKALSI  788
                  E+Y+ +  +  ++Y++++       ED ++RFIK  + L+KA+++   +  A  +
Sbjct  743   SEKKSERYYTI--SNTMDYVIGL------GEDERQRFIKTVTELGKAFALCATEPTAQEL  794

Query  789   KNKIAFMYAIKARFLKF-----AKenenenllnQALIKQVVDKAIVSSKVVDIFDASGIK  843
             ++ IAF  A+KA ++K+          +     +A I+Q+V +++V+  V+D++++ G+ 
Sbjct  795   NDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLE  854

Query  844   KPDISILSDEFLLEVKNMKRKNLAFEMLKKILNDEIKAREKLSLTKAKKLAQMLSDAIKK  903
             +PD+SILSD+FL +V  +K+KN+A E+L+++L++++K+  K + T +K++++ML+++I+K
Sbjct  855   QPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINK  914

Query  904   YNNKLISSSEALDELINMSKSIVSMEDEAKKLGLKDYEYAFYSALACNDEYEKILGNEKL  963
             YN++ I +S  ++ELI+++K I   ++ ++ LGL+  E AFY AL  ++   K + + KL
Sbjct  915   YNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKL  974

Query  964   LALVSEILQIIKNNVSIDWMIKEnvrarlrvavkrvlnkYGYPPDMQQLAIDGVLAQAEI  1023
              A+  E+ + +K+N+S+DW  +++ +A++RVAV+R+L+KYGYPPD+Q++A++ V+ QAE+
Sbjct  975   RAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAEL  1034

Query  1024  LAKE  1027
             +A +
Sbjct  1035  MASN  1038

128) hsdR3 in NC_022352


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  763 bits (2888),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 458/1024 (45%), Positives = 740/1024 (73%), Gaps = 53/1024 (5%)

Query  31    RATDEVLLETSLVNALCRLNPQLDLSKANEIYKELKSKNHLSLLDSNENFHYKLVNGVNI  90
             ++  +V+L+  L +AL ++N++++    +    EL   +  +LL++N  FH +L+NG++I
Sbjct  41    KSDKDVVLHERLEKALRKINSDIHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEI  100

Query  91    NT-TKDGESRADIINLIDFNNASNNEFIATNQLSITEAKENKIPDVVLYINGIPLVLMEL  149
             +    +G+S  +I++++DF+++ NN+F+A NQ+++ ++   K PD+VL+ING+P+V++EL
Sbjct  101   EDYDDEGQSIVEIVKIVDFEHPQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIEL  160

Query  150   KSPSDENATINSAYNQINTYKQTIPSIFTYNAFCVISDGYFARAGSISADFSRFMAWKSS  209
             K++++E   ++ +Y+Q++TYK  IP +FT+N   V SDG  ++AGS++A++ RFM+W+S 
Sbjct  161   KNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSK  220

Query  210   DGINYAPNKSLEIKTLIDGMLNPKTLLDIICNFIVFEKEQIRDLNGILSIKTTKKIACYH  269
             DG   +++    +  LI+GMLNPKTLLD+I  F++F+ +   +++ IL        A YH
Sbjct  221   DGETESSSSLASLDVLINGMLNPKTLLDLIRYFVLFQDDGKGHISKIL--------AAYH  272

Query  270   QYYAVNKAISRTITASSKDGDKKGGVVWHTQGSGKSLSMVFYSAKAIKALNNPTILLITD  329
             QYYAVNKA+ R++ ASS +GD KGGV+WHTQGSGKSL+MVF+S+K I+ LNNPT++++TD
Sbjct  273   QYYAVNKAVDRALLASSGQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVIVTD  332

Query  330   RNDLDDQLFGTFASCAN-----LLRQEPKQANDKEHLKELLRVASGGVVFTTIQKFSPE-  383
             RNDLD+QL++TF          LLRQ PKQA+ + +LK LL V SGG+VFTT+QKF PE 
Sbjct  333   RNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQ  392

Query  384   NDNVFECLSLRDNIIVIADEAHRTQYGFDAKVVEEKSKSGDVLGQKIVYGFAKYLRDALP  443
             N+ +   L+ R N+IV+ADEAHRTQYGF+AK  ++K       G+ I YG+AKYLRDALP
Sbjct  393   NETIMAALTERKNVIVMADEAHRTQYGFNAKY-DDK-------GEGIKYGYAKYLRDALP  444

Query  444   NATYIGFTGTPIESHDINTPAVFGNYIDIYDISRAVEDGATVSIYYESRLAKIELSEEGK  503
             NAT++GFTGTP+ S D NT  VFGNYID+YD+++AV DG+TV IYYESR+  ++L++ + 
Sbjct  445   NATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQ-SL  503

Query  504   RLVNELDEKLENQDSQ-----KAKATKLEALVGSTSRLKQIAKDIVKHFETRSSKLGGKG  558
              L +  ++  E+Q+ +     K+K +++EAL G+ +R+  +AKDI++HFETR   + GKG
Sbjct  504   DLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKG  563

Query  559   MIVSISRSVAIKLYDEIIKIRPSWHSDELSSGAIKVVMTSSSSDGVEFSKHHTSKIQKQF  618
             MIV++SR +A+ LYDEII+++P WHSD+   G IKVVMT+SSSD   F +H  +K ++  
Sbjct  564   MIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSV  623

Query  619   LANRMRNIDDELKLVIVVDMWLTGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPS  678
             L +RM++++DEL+LVIV DMWLTGFDVPS+HT+YIDKPMKGHNLMQAIARVNRV+KDKP+
Sbjct  624   LEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPG  683

Query  679   GLVVDYLGIASDLKKALSFYSESGGKGDIITTQEDAVKVMIEKLEIVEQML-PNDY----  733
             GL+VDY+GIA  LK AL  Y+ES+     I T + AV +M+ K +++++ML   DY    
Sbjct  684   GLIVDYVGIAESLKEALKEYTESDQAQTAIDT-DKAVELMLLKYDVIQDMLYNLDYSKFN  742

Query  734   -----EKYFELDTGAKLEYILDVEEHILSNEDGKNRFIKEFAALDKAYTIAMPHEKALSI  788
                  E+Y+ +  +  ++Y++++       ED ++RFIK  + L+KA+++   +  A  +
Sbjct  743   SEKKSERYYTI--SNTMDYVIGL------GEDERQRFIKTVTELGKAFALCATEPTAQEL  794

Query  789   KNKIAFMYAIKARFLKF-----AKenenenllnQALIKQVVDKAIVSSKVVDIFDASGIK  843
             ++ IAF  A+KA ++K+          +     +A I+Q+V +++V+  V+D++++ G+ 
Sbjct  795   NDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLE  854

Query  844   KPDISILSDEFLLEVKNMKRKNLAFEMLKKILNDEIKAREKLSLTKAKKLAQMLSDAIKK  903
             +PD+SILSD+FL +V  +K+KN+A E+L+++L++++K+  K + T +K++++ML+++I+K
Sbjct  855   QPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINK  914

Query  904   YNNKLISSSEALDELINMSKSIVSMEDEAKKLGLKDYEYAFYSALACNDEYEKILGNEKL  963
             YN++ I +S  ++ELI+++K I   ++ ++ LGL+  E AFY AL  ++   K + + KL
Sbjct  915   YNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKL  974

Query  964   LALVSEILQIIKNNVSIDWMIKEnvrarlrvavkrvlnkYGYPPDMQQLAIDGVLAQAEI  1023
              A+  E+ + +K+N+S+DW  +++ +A++RVAV+R+L+KYGYPPD+Q++A++ V+ QAE+
Sbjct  975   RAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAEL  1034

Query  1024  LAKE  1027
             +A +
Sbjct  1035  MASN  1038

129) hsdR3 in NC_022351


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  763 bits (2888),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 458/1024 (45%), Positives = 740/1024 (73%), Gaps = 53/1024 (5%)

Query  31    RATDEVLLETSLVNALCRLNPQLDLSKANEIYKELKSKNHLSLLDSNENFHYKLVNGVNI  90
             ++  +V+L+  L +AL ++N++++    +    EL   +  +LL++N  FH +L+NG++I
Sbjct  41    KSDKDVVLHERLEKALRKINSDIHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEI  100

Query  91    NT-TKDGESRADIINLIDFNNASNNEFIATNQLSITEAKENKIPDVVLYINGIPLVLMEL  149
             +    +G+S  +I++++DF+++ NN+F+A NQ+++ ++   K PD+VL+ING+P+V++EL
Sbjct  101   EDYDDEGQSIVEIVKIVDFEHPQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIEL  160

Query  150   KSPSDENATINSAYNQINTYKQTIPSIFTYNAFCVISDGYFARAGSISADFSRFMAWKSS  209
             K++++E   ++ +Y+Q++TYK  IP +FT+N   V SDG  ++AGS++A++ RFM+W+S 
Sbjct  161   KNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSK  220

Query  210   DGINYAPNKSLEIKTLIDGMLNPKTLLDIICNFIVFEKEQIRDLNGILSIKTTKKIACYH  269
             DG   +++    +  LI+GMLNPKTLLD+I  F++F+ +   +++ IL        A YH
Sbjct  221   DGETESSSSLASLDVLINGMLNPKTLLDLIRYFVLFQDDGKGHISKIL--------AAYH  272

Query  270   QYYAVNKAISRTITASSKDGDKKGGVVWHTQGSGKSLSMVFYSAKAIKALNNPTILLITD  329
             QYYAVNKA+ R++ ASS +GD KGGV+WHTQGSGKSL+MVF+S+K I+ LNNPT++++TD
Sbjct  273   QYYAVNKAVDRALLASSGQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVIVTD  332

Query  330   RNDLDDQLFGTFASCAN-----LLRQEPKQANDKEHLKELLRVASGGVVFTTIQKFSPE-  383
             RNDLD+QL++TF          LLRQ PKQA+ + +LK LL V SGG+VFTT+QKF PE 
Sbjct  333   RNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQ  392

Query  384   NDNVFECLSLRDNIIVIADEAHRTQYGFDAKVVEEKSKSGDVLGQKIVYGFAKYLRDALP  443
             N+ +   L+ R N+IV+ADEAHRTQYGF+AK  ++K       G+ I YG+AKYLRDALP
Sbjct  393   NETIMAALTERKNVIVMADEAHRTQYGFNAKY-DDK-------GEGIKYGYAKYLRDALP  444

Query  444   NATYIGFTGTPIESHDINTPAVFGNYIDIYDISRAVEDGATVSIYYESRLAKIELSEEGK  503
             NAT++GFTGTP+ S D NT  VFGNYID+YD+++AV DG+TV IYYESR+  ++L++ + 
Sbjct  445   NATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQ-SL  503

Query  504   RLVNELDEKLENQDSQ-----KAKATKLEALVGSTSRLKQIAKDIVKHFETRSSKLGGKG  558
              L +  ++  E+Q+ +     K+K +++EAL G+ +R+  +AKDI++HFETR   + GKG
Sbjct  504   DLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKG  563

Query  559   MIVSISRSVAIKLYDEIIKIRPSWHSDELSSGAIKVVMTSSSSDGVEFSKHHTSKIQKQF  618
             MIV++SR +A+ LYDEII+++P WHSD+   G IKVVMT+SSSD   F +H  +K ++  
Sbjct  564   MIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSV  623

Query  619   LANRMRNIDDELKLVIVVDMWLTGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPS  678
             L +RM++++DEL+LVIV DMWLTGFDVPS+HT+YIDKPMKGHNLMQAIARVNRV+KDKP+
Sbjct  624   LEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPG  683

Query  679   GLVVDYLGIASDLKKALSFYSESGGKGDIITTQEDAVKVMIEKLEIVEQML-PNDY----  733
             GL+VDY+GIA  LK AL  Y+ES+     I T + AV +M+ K +++++ML   DY    
Sbjct  684   GLIVDYVGIAESLKEALKEYTESDQAQTAIDT-DKAVELMLLKYDVIQDMLYNLDYSKFN  742

Query  734   -----EKYFELDTGAKLEYILDVEEHILSNEDGKNRFIKEFAALDKAYTIAMPHEKALSI  788
                  E+Y+ +  +  ++Y++++       ED ++RFIK  + L+KA+++   +  A  +
Sbjct  743   SEKKSERYYTI--SNTMDYVIGL------GEDERQRFIKTVTELGKAFALCATEPTAQEL  794

Query  789   KNKIAFMYAIKARFLKF-----AKenenenllnQALIKQVVDKAIVSSKVVDIFDASGIK  843
             ++ IAF  A+KA ++K+          +     +A I+Q+V +++V+  V+D++++ G+ 
Sbjct  795   NDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLE  854

Query  844   KPDISILSDEFLLEVKNMKRKNLAFEMLKKILNDEIKAREKLSLTKAKKLAQMLSDAIKK  903
             +PD+SILSD+FL +V  +K+KN+A E+L+++L++++K+  K + T +K++++ML+++I+K
Sbjct  855   QPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINK  914

Query  904   YNNKLISSSEALDELINMSKSIVSMEDEAKKLGLKDYEYAFYSALACNDEYEKILGNEKL  963
             YN++ I +S  ++ELI+++K I   ++ ++ LGL+  E AFY AL  ++   K + + KL
Sbjct  915   YNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKL  974

Query  964   LALVSEILQIIKNNVSIDWMIKEnvrarlrvavkrvlnkYGYPPDMQQLAIDGVLAQAEI  1023
              A+  E+ + +K+N+S+DW  +++ +A++RVAV+R+L+KYGYPPD+Q++A++ V+ QAE+
Sbjct  975   RAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAEL  1034

Query  1024  LAKE  1027
             +A +
Sbjct  1035  MASN  1038

130) hsdR3 in NC_022353


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  763 bits (2888),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 458/1024 (45%), Positives = 740/1024 (73%), Gaps = 53/1024 (5%)

Query  31    RATDEVLLETSLVNALCRLNPQLDLSKANEIYKELKSKNHLSLLDSNENFHYKLVNGVNI  90
             ++  +V+L+  L +AL ++N++++    +    EL   +  +LL++N  FH +L+NG++I
Sbjct  41    KSDKDVVLHERLEKALRKINSDIHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEI  100

Query  91    NT-TKDGESRADIINLIDFNNASNNEFIATNQLSITEAKENKIPDVVLYINGIPLVLMEL  149
             +    +G+S  +I++++DF+++ NN+F+A NQ+++ ++   K PD+VL+ING+P+V++EL
Sbjct  101   EDYDDEGQSIVEIVKIVDFEHPQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIEL  160

Query  150   KSPSDENATINSAYNQINTYKQTIPSIFTYNAFCVISDGYFARAGSISADFSRFMAWKSS  209
             K++++E   ++ +Y+Q++TYK  IP +FT+N   V SDG  ++AGS++A++ RFM+W+S 
Sbjct  161   KNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSK  220

Query  210   DGINYAPNKSLEIKTLIDGMLNPKTLLDIICNFIVFEKEQIRDLNGILSIKTTKKIACYH  269
             DG   +++    +  LI+GMLNPKTLLD+I  F++F+ +   +++ IL        A YH
Sbjct  221   DGETESSSSLASLDVLINGMLNPKTLLDLIRYFVLFQDDGKGHISKIL--------AAYH  272

Query  270   QYYAVNKAISRTITASSKDGDKKGGVVWHTQGSGKSLSMVFYSAKAIKALNNPTILLITD  329
             QYYAVNKA+ R++ ASS +GD KGGV+WHTQGSGKSL+MVF+S+K I+ LNNPT++++TD
Sbjct  273   QYYAVNKAVDRALLASSGQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVIVTD  332

Query  330   RNDLDDQLFGTFASCAN-----LLRQEPKQANDKEHLKELLRVASGGVVFTTIQKFSPE-  383
             RNDLD+QL++TF          LLRQ PKQA+ + +LK LL V SGG+VFTT+QKF PE 
Sbjct  333   RNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQ  392

Query  384   NDNVFECLSLRDNIIVIADEAHRTQYGFDAKVVEEKSKSGDVLGQKIVYGFAKYLRDALP  443
             N+ +   L+ R N+IV+ADEAHRTQYGF+AK  ++K       G+ I YG+AKYLRDALP
Sbjct  393   NETIMAALTERKNVIVMADEAHRTQYGFNAKY-DDK-------GEGIKYGYAKYLRDALP  444

Query  444   NATYIGFTGTPIESHDINTPAVFGNYIDIYDISRAVEDGATVSIYYESRLAKIELSEEGK  503
             NAT++GFTGTP+ S D NT  VFGNYID+YD+++AV DG+TV IYYESR+  ++L++ + 
Sbjct  445   NATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQ-SL  503

Query  504   RLVNELDEKLENQDSQ-----KAKATKLEALVGSTSRLKQIAKDIVKHFETRSSKLGGKG  558
              L +  ++  E+Q+ +     K+K +++EAL G+ +R+  +AKDI++HFETR   + GKG
Sbjct  504   DLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKG  563

Query  559   MIVSISRSVAIKLYDEIIKIRPSWHSDELSSGAIKVVMTSSSSDGVEFSKHHTSKIQKQF  618
             MIV++SR +A+ LYDEII+++P WHSD+   G IKVVMT+SSSD   F +H  +K ++  
Sbjct  564   MIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSV  623

Query  619   LANRMRNIDDELKLVIVVDMWLTGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPS  678
             L +RM++++DEL+LVIV DMWLTGFDVPS+HT+YIDKPMKGHNLMQAIARVNRV+KDKP+
Sbjct  624   LEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPG  683

Query  679   GLVVDYLGIASDLKKALSFYSESGGKGDIITTQEDAVKVMIEKLEIVEQML-PNDY----  733
             GL+VDY+GIA  LK AL  Y+ES+     I T + AV +M+ K +++++ML   DY    
Sbjct  684   GLIVDYVGIAESLKEALKEYTESDQAQTAIDT-DKAVELMLLKYDVIQDMLYNLDYSKFN  742

Query  734   -----EKYFELDTGAKLEYILDVEEHILSNEDGKNRFIKEFAALDKAYTIAMPHEKALSI  788
                  E+Y+ +  +  ++Y++++       ED ++RFIK  + L+KA+++   +  A  +
Sbjct  743   SEKKSERYYTI--SNTMDYVIGL------GEDERQRFIKTVTELGKAFALCATEPTAQEL  794

Query  789   KNKIAFMYAIKARFLKF-----AKenenenllnQALIKQVVDKAIVSSKVVDIFDASGIK  843
             ++ IAF  A+KA ++K+          +     +A I+Q+V +++V+  V+D++++ G+ 
Sbjct  795   NDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLE  854

Query  844   KPDISILSDEFLLEVKNMKRKNLAFEMLKKILNDEIKAREKLSLTKAKKLAQMLSDAIKK  903
             +PD+SILSD+FL +V  +K+KN+A E+L+++L++++K+  K + T +K++++ML+++I+K
Sbjct  855   QPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINK  914

Query  904   YNNKLISSSEALDELINMSKSIVSMEDEAKKLGLKDYEYAFYSALACNDEYEKILGNEKL  963
             YN++ I +S  ++ELI+++K I   ++ ++ LGL+  E AFY AL  ++   K + + KL
Sbjct  915   YNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKL  974

Query  964   LALVSEILQIIKNNVSIDWMIKEnvrarlrvavkrvlnkYGYPPDMQQLAIDGVLAQAEI  1023
              A+  E+ + +K+N+S+DW  +++ +A++RVAV+R+L+KYGYPPD+Q++A++ V+ QAE+
Sbjct  975   RAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAEL  1034

Query  1024  LAKE  1027
             +A +
Sbjct  1035  MASN  1038

131) CJJ81176_1534 in NC_008787


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  763 bits (2888),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 458/1024 (45%), Positives = 740/1024 (73%), Gaps = 53/1024 (5%)

Query  31    RATDEVLLETSLVNALCRLNPQLDLSKANEIYKELKSKNHLSLLDSNENFHYKLVNGVNI  90
             ++  +V+L+  L +AL ++N++++    +    EL   +  +LL++N  FH +L+NG++I
Sbjct  41    KSDKDVVLHERLEKALRKINSDIHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEI  100

Query  91    NT-TKDGESRADIINLIDFNNASNNEFIATNQLSITEAKENKIPDVVLYINGIPLVLMEL  149
             +    +G+S  +I++++DF+++ NN+F+A NQ+++ ++   K PD+VL+ING+P+V++EL
Sbjct  101   EDYDDEGQSIVEIVKIVDFEHPQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIEL  160

Query  150   KSPSDENATINSAYNQINTYKQTIPSIFTYNAFCVISDGYFARAGSISADFSRFMAWKSS  209
             K++++E   ++ +Y+Q++TYK  IP +FT+N   V SDG  ++AGS++A++ RFM+W+S 
Sbjct  161   KNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSK  220

Query  210   DGINYAPNKSLEIKTLIDGMLNPKTLLDIICNFIVFEKEQIRDLNGILSIKTTKKIACYH  269
             DG   +++    +  LI+GMLNPKTLLD+I  F++F+ +   +++ IL        A YH
Sbjct  221   DGETESSSSLASLDVLINGMLNPKTLLDLIRYFVLFQDDGKGHISKIL--------AAYH  272

Query  270   QYYAVNKAISRTITASSKDGDKKGGVVWHTQGSGKSLSMVFYSAKAIKALNNPTILLITD  329
             QYYAVNKA+ R++ ASS +GD KGGV+WHTQGSGKSL+MVF+S+K I+ LNNPT++++TD
Sbjct  273   QYYAVNKAVDRALLASSGQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVIVTD  332

Query  330   RNDLDDQLFGTFASCAN-----LLRQEPKQANDKEHLKELLRVASGGVVFTTIQKFSPE-  383
             RNDLD+QL++TF          LLRQ PKQA+ + +LK LL V SGG+VFTT+QKF PE 
Sbjct  333   RNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQ  392

Query  384   NDNVFECLSLRDNIIVIADEAHRTQYGFDAKVVEEKSKSGDVLGQKIVYGFAKYLRDALP  443
             N+ +   L+ R N+IV+ADEAHRTQYGF+AK  ++K       G+ I YG+AKYLRDALP
Sbjct  393   NETIMAALTERKNVIVMADEAHRTQYGFNAKY-DDK-------GEGIKYGYAKYLRDALP  444

Query  444   NATYIGFTGTPIESHDINTPAVFGNYIDIYDISRAVEDGATVSIYYESRLAKIELSEEGK  503
             NAT++GFTGTP+ S D NT  VFGNYID+YD+++AV DG+TV IYYESR+  ++L++ + 
Sbjct  445   NATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQ-SL  503

Query  504   RLVNELDEKLENQDSQ-----KAKATKLEALVGSTSRLKQIAKDIVKHFETRSSKLGGKG  558
              L +  ++  E+Q+ +     K+K +++EAL G+ +R+  +AKDI++HFETR   + GKG
Sbjct  504   DLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKG  563

Query  559   MIVSISRSVAIKLYDEIIKIRPSWHSDELSSGAIKVVMTSSSSDGVEFSKHHTSKIQKQF  618
             MIV++SR +A+ LYDEII+++P WHSD+   G IKVVMT+SSSD   F +H  +K ++  
Sbjct  564   MIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSV  623

Query  619   LANRMRNIDDELKLVIVVDMWLTGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPS  678
             L +RM++++DEL+LVIV DMWLTGFDVPS+HT+YIDKPMKGHNLMQAIARVNRV+KDKP+
Sbjct  624   LEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPG  683

Query  679   GLVVDYLGIASDLKKALSFYSESGGKGDIITTQEDAVKVMIEKLEIVEQML-PNDY----  733
             GL+VDY+GIA  LK AL  Y+ES+     I T + AV +M+ K +++++ML   DY    
Sbjct  684   GLIVDYVGIAESLKEALKEYTESDQAQTAIDT-DKAVELMLLKYDVIQDMLYNLDYSKFN  742

Query  734   -----EKYFELDTGAKLEYILDVEEHILSNEDGKNRFIKEFAALDKAYTIAMPHEKALSI  788
                  E+Y+ +  +  ++Y++++       ED ++RFIK  + L+KA+++   +  A  +
Sbjct  743   SEKKSERYYTI--SNTMDYVIGL------GEDERQRFIKTVTELGKAFALCATEPTAQEL  794

Query  789   KNKIAFMYAIKARFLKF-----AKenenenllnQALIKQVVDKAIVSSKVVDIFDASGIK  843
             ++ IAF  A+KA ++K+          +     +A I+Q+V +++V+  V+D++++ G+ 
Sbjct  795   NDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLE  854

Query  844   KPDISILSDEFLLEVKNMKRKNLAFEMLKKILNDEIKAREKLSLTKAKKLAQMLSDAIKK  903
             +PD+SILSD+FL +V  +K+KN+A E+L+++L++++K+  K + T +K++++ML+++I+K
Sbjct  855   QPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINK  914

Query  904   YNNKLISSSEALDELINMSKSIVSMEDEAKKLGLKDYEYAFYSALACNDEYEKILGNEKL  963
             YN++ I +S  ++ELI+++K I   ++ ++ LGL+  E AFY AL  ++   K + + KL
Sbjct  915   YNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKL  974

Query  964   LALVSEILQIIKNNVSIDWMIKEnvrarlrvavkrvlnkYGYPPDMQQLAIDGVLAQAEI  1023
              A+  E+ + +K+N+S+DW  +++ +A++RVAV+R+L+KYGYPPD+Q++A++ V+ QAE+
Sbjct  975   RAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAEL  1034

Query  1024  LAKE  1027
             +A +
Sbjct  1035  MASN  1038

132) hsdR in NC_017279


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  763 bits (2888),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 458/1024 (45%), Positives = 740/1024 (73%), Gaps = 53/1024 (5%)

Query  31    RATDEVLLETSLVNALCRLNPQLDLSKANEIYKELKSKNHLSLLDSNENFHYKLVNGVNI  90
             ++  +V+L+  L +AL ++N++++    +    EL   +  +LL++N  FH +L+NG++I
Sbjct  41    KSDKDVVLHERLEKALRKINSDIHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEI  100

Query  91    NT-TKDGESRADIINLIDFNNASNNEFIATNQLSITEAKENKIPDVVLYINGIPLVLMEL  149
             +    +G+S  +I++++DF+++ NN+F+A NQ+++ ++   K PD+VL+ING+P+V++EL
Sbjct  101   EDYDDEGQSIVEIVKIVDFEHPQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIEL  160

Query  150   KSPSDENATINSAYNQINTYKQTIPSIFTYNAFCVISDGYFARAGSISADFSRFMAWKSS  209
             K++++E   ++ +Y+Q++TYK  IP +FT+N   V SDG  ++AGS++A++ RFM+W+S 
Sbjct  161   KNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSK  220

Query  210   DGINYAPNKSLEIKTLIDGMLNPKTLLDIICNFIVFEKEQIRDLNGILSIKTTKKIACYH  269
             DG   +++    +  LI+GMLNPKTLLD+I  F++F+ +   +++ IL        A YH
Sbjct  221   DGETESSSSLASLDVLINGMLNPKTLLDLIRYFVLFQDDGKGHISKIL--------AAYH  272

Query  270   QYYAVNKAISRTITASSKDGDKKGGVVWHTQGSGKSLSMVFYSAKAIKALNNPTILLITD  329
             QYYAVNKA+ R++ ASS +GD KGGV+WHTQGSGKSL+MVF+S+K I+ LNNPT++++TD
Sbjct  273   QYYAVNKAVDRALLASSGQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVIVTD  332

Query  330   RNDLDDQLFGTFASCAN-----LLRQEPKQANDKEHLKELLRVASGGVVFTTIQKFSPE-  383
             RNDLD+QL++TF          LLRQ PKQA+ + +LK LL V SGG+VFTT+QKF PE 
Sbjct  333   RNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQ  392

Query  384   NDNVFECLSLRDNIIVIADEAHRTQYGFDAKVVEEKSKSGDVLGQKIVYGFAKYLRDALP  443
             N+ +   L+ R N+IV+ADEAHRTQYGF+AK  ++K       G+ I YG+AKYLRDALP
Sbjct  393   NETIMAALTERKNVIVMADEAHRTQYGFNAKY-DDK-------GEGIKYGYAKYLRDALP  444

Query  444   NATYIGFTGTPIESHDINTPAVFGNYIDIYDISRAVEDGATVSIYYESRLAKIELSEEGK  503
             NAT++GFTGTP+ S D NT  VFGNYID+YD+++AV DG+TV IYYESR+  ++L++ + 
Sbjct  445   NATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQ-SL  503

Query  504   RLVNELDEKLENQDSQ-----KAKATKLEALVGSTSRLKQIAKDIVKHFETRSSKLGGKG  558
              L +  ++  E+Q+ +     K+K +++EAL G+ +R+  +AKDI++HFETR   + GKG
Sbjct  504   DLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKG  563

Query  559   MIVSISRSVAIKLYDEIIKIRPSWHSDELSSGAIKVVMTSSSSDGVEFSKHHTSKIQKQF  618
             MIV++SR +A+ LYDEII+++P WHSD+   G IKVVMT+SSSD   F +H  +K ++  
Sbjct  564   MIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSV  623

Query  619   LANRMRNIDDELKLVIVVDMWLTGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPS  678
             L +RM++++DEL+LVIV DMWLTGFDVPS+HT+YIDKPMKGHNLMQAIARVNRV+KDKP+
Sbjct  624   LEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPG  683

Query  679   GLVVDYLGIASDLKKALSFYSESGGKGDIITTQEDAVKVMIEKLEIVEQML-PNDY----  733
             GL+VDY+GIA  LK AL  Y+ES+     I T + AV +M+ K +++++ML   DY    
Sbjct  684   GLIVDYVGIAESLKEALKEYTESDQAQTAIDT-DKAVELMLLKYDVIQDMLYNLDYSKFN  742

Query  734   -----EKYFELDTGAKLEYILDVEEHILSNEDGKNRFIKEFAALDKAYTIAMPHEKALSI  788
                  E+Y+ +  +  ++Y++++       ED ++RFIK  + L+KA+++   +  A  +
Sbjct  743   SEKKSERYYTI--SNTMDYVIGL------GEDERQRFIKTVTELGKAFALCATEPTAQEL  794

Query  789   KNKIAFMYAIKARFLKF-----AKenenenllnQALIKQVVDKAIVSSKVVDIFDASGIK  843
             ++ IAF  A+KA ++K+          +     +A I+Q+V +++V+  V+D++++ G+ 
Sbjct  795   NDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLE  854

Query  844   KPDISILSDEFLLEVKNMKRKNLAFEMLKKILNDEIKAREKLSLTKAKKLAQMLSDAIKK  903
             +PD+SILSD+FL +V  +K+KN+A E+L+++L++++K+  K + T +K++++ML+++I+K
Sbjct  855   QPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINK  914

Query  904   YNNKLISSSEALDELINMSKSIVSMEDEAKKLGLKDYEYAFYSALACNDEYEKILGNEKL  963
             YN++ I +S  ++ELI+++K I   ++ ++ LGL+  E AFY AL  ++   K + + KL
Sbjct  915   YNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKL  974

Query  964   LALVSEILQIIKNNVSIDWMIKEnvrarlrvavkrvlnkYGYPPDMQQLAIDGVLAQAEI  1023
              A+  E+ + +K+N+S+DW  +++ +A++RVAV+R+L+KYGYPPD+Q++A++ V+ QAE+
Sbjct  975   RAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAEL  1034

Query  1024  LAKE  1027
             +A +
Sbjct  1035  MASN  1038

133) hsdR in NC_002163


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  763 bits (2888),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 458/1024 (45%), Positives = 740/1024 (73%), Gaps = 53/1024 (5%)

Query  31    RATDEVLLETSLVNALCRLNPQLDLSKANEIYKELKSKNHLSLLDSNENFHYKLVNGVNI  90
             ++  +V+L+  L +AL ++N++++    +    EL   +  +LL++N  FH +L+NG++I
Sbjct  41    KSDKDVVLHERLEKALRKINSDIHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEI  100

Query  91    NT-TKDGESRADIINLIDFNNASNNEFIATNQLSITEAKENKIPDVVLYINGIPLVLMEL  149
             +    +G+S  +I++++DF+++ NN+F+A NQ+++ ++   K PD+VL+ING+P+V++EL
Sbjct  101   EDYDDEGQSIVEIVKIVDFEHPQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIEL  160

Query  150   KSPSDENATINSAYNQINTYKQTIPSIFTYNAFCVISDGYFARAGSISADFSRFMAWKSS  209
             K++++E   ++ +Y+Q++TYK  IP +FT+N   V SDG  ++AGS++A++ RFM+W+S 
Sbjct  161   KNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSK  220

Query  210   DGINYAPNKSLEIKTLIDGMLNPKTLLDIICNFIVFEKEQIRDLNGILSIKTTKKIACYH  269
             DG   +++    +  LI+GMLNPKTLLD+I  F++F+ +   +++ IL        A YH
Sbjct  221   DGETESSSSLASLDVLINGMLNPKTLLDLIRYFVLFQDDGKGHISKIL--------AAYH  272

Query  270   QYYAVNKAISRTITASSKDGDKKGGVVWHTQGSGKSLSMVFYSAKAIKALNNPTILLITD  329
             QYYAVNKA+ R++ ASS +GD KGGV+WHTQGSGKSL+MVF+S+K I+ LNNPT++++TD
Sbjct  273   QYYAVNKAVDRALLASSGQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVIVTD  332

Query  330   RNDLDDQLFGTFASCAN-----LLRQEPKQANDKEHLKELLRVASGGVVFTTIQKFSPE-  383
             RNDLD+QL++TF          LLRQ PKQA+ + +LK LL V SGG+VFTT+QKF PE 
Sbjct  333   RNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQ  392

Query  384   NDNVFECLSLRDNIIVIADEAHRTQYGFDAKVVEEKSKSGDVLGQKIVYGFAKYLRDALP  443
             N+ +   L+ R N+IV+ADEAHRTQYGF+AK  ++K       G+ I YG+AKYLRDALP
Sbjct  393   NETIMAALTERKNVIVMADEAHRTQYGFNAKY-DDK-------GEGIKYGYAKYLRDALP  444

Query  444   NATYIGFTGTPIESHDINTPAVFGNYIDIYDISRAVEDGATVSIYYESRLAKIELSEEGK  503
             NAT++GFTGTP+ S D NT  VFGNYID+YD+++AV DG+TV IYYESR+  ++L++ + 
Sbjct  445   NATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQ-SL  503

Query  504   RLVNELDEKLENQDSQ-----KAKATKLEALVGSTSRLKQIAKDIVKHFETRSSKLGGKG  558
              L +  ++  E+Q+ +     K+K +++EAL G+ +R+  +AKDI++HFETR   + GKG
Sbjct  504   DLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKG  563

Query  559   MIVSISRSVAIKLYDEIIKIRPSWHSDELSSGAIKVVMTSSSSDGVEFSKHHTSKIQKQF  618
             MIV++SR +A+ LYDEII+++P WHSD+   G IKVVMT+SSSD   F +H  +K ++  
Sbjct  564   MIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSV  623

Query  619   LANRMRNIDDELKLVIVVDMWLTGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPS  678
             L +RM++++DEL+LVIV DMWLTGFDVPS+HT+YIDKPMKGHNLMQAIARVNRV+KDKP+
Sbjct  624   LEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPG  683

Query  679   GLVVDYLGIASDLKKALSFYSESGGKGDIITTQEDAVKVMIEKLEIVEQML-PNDY----  733
             GL+VDY+GIA  LK AL  Y+ES+     I T + AV +M+ K +++++ML   DY    
Sbjct  684   GLIVDYVGIAESLKEALKEYTESDQAQTAIDT-DKAVELMLLKYDVIQDMLYNLDYSKFN  742

Query  734   -----EKYFELDTGAKLEYILDVEEHILSNEDGKNRFIKEFAALDKAYTIAMPHEKALSI  788
                  E+Y+ +  +  ++Y++++       ED ++RFIK  + L+KA+++   +  A  +
Sbjct  743   SEKKSERYYTI--SNTMDYVIGL------GEDERQRFIKTVTELGKAFALCATEPTAQEL  794

Query  789   KNKIAFMYAIKARFLKF-----AKenenenllnQALIKQVVDKAIVSSKVVDIFDASGIK  843
             ++ IAF  A+KA ++K+          +     +A I+Q+V +++V+  V+D++++ G+ 
Sbjct  795   NDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLE  854

Query  844   KPDISILSDEFLLEVKNMKRKNLAFEMLKKILNDEIKAREKLSLTKAKKLAQMLSDAIKK  903
             +PD+SILSD+FL +V  +K+KN+A E+L+++L++++K+  K + T +K++++ML+++I+K
Sbjct  855   QPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINK  914

Query  904   YNNKLISSSEALDELINMSKSIVSMEDEAKKLGLKDYEYAFYSALACNDEYEKILGNEKL  963
             YN++ I +S  ++ELI+++K I   ++ ++ LGL+  E AFY AL  ++   K + + KL
Sbjct  915   YNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKL  974

Query  964   LALVSEILQIIKNNVSIDWMIKEnvrarlrvavkrvlnkYGYPPDMQQLAIDGVLAQAEI  1023
              A+  E+ + +K+N+S+DW  +++ +A++RVAV+R+L+KYGYPPD+Q++A++ V+ QAE+
Sbjct  975   RAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAEL  1034

Query  1024  LAKE  1027
             +A +
Sbjct  1035  MASN  1038

134) hsdR in NC_018521


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  763 bits (2888),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 458/1024 (45%), Positives = 740/1024 (73%), Gaps = 53/1024 (5%)

Query  31    RATDEVLLETSLVNALCRLNPQLDLSKANEIYKELKSKNHLSLLDSNENFHYKLVNGVNI  90
             ++  +V+L+  L +AL ++N++++    +    EL   +  +LL++N  FH +L+NG++I
Sbjct  41    KSDKDVVLHERLEKALRKINSDIHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEI  100

Query  91    NT-TKDGESRADIINLIDFNNASNNEFIATNQLSITEAKENKIPDVVLYINGIPLVLMEL  149
             +    +G+S  +I++++DF+++ NN+F+A NQ+++ ++   K PD+VL+ING+P+V++EL
Sbjct  101   EDYDDEGQSIVEIVKIVDFEHPQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIEL  160

Query  150   KSPSDENATINSAYNQINTYKQTIPSIFTYNAFCVISDGYFARAGSISADFSRFMAWKSS  209
             K++++E   ++ +Y+Q++TYK  IP +FT+N   V SDG  ++AGS++A++ RFM+W+S 
Sbjct  161   KNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSK  220

Query  210   DGINYAPNKSLEIKTLIDGMLNPKTLLDIICNFIVFEKEQIRDLNGILSIKTTKKIACYH  269
             DG   +++    +  LI+GMLNPKTLLD+I  F++F+ +   +++ IL        A YH
Sbjct  221   DGETESSSSLASLDVLINGMLNPKTLLDLIRYFVLFQDDGKGHISKIL--------AAYH  272

Query  270   QYYAVNKAISRTITASSKDGDKKGGVVWHTQGSGKSLSMVFYSAKAIKALNNPTILLITD  329
             QYYAVNKA+ R++ ASS +GD KGGV+WHTQGSGKSL+MVF+S+K I+ LNNPT++++TD
Sbjct  273   QYYAVNKAVDRALLASSGQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVIVTD  332

Query  330   RNDLDDQLFGTFASCAN-----LLRQEPKQANDKEHLKELLRVASGGVVFTTIQKFSPE-  383
             RNDLD+QL++TF          LLRQ PKQA+ + +LK LL V SGG+VFTT+QKF PE 
Sbjct  333   RNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQ  392

Query  384   NDNVFECLSLRDNIIVIADEAHRTQYGFDAKVVEEKSKSGDVLGQKIVYGFAKYLRDALP  443
             N+ +   L+ R N+IV+ADEAHRTQYGF+AK  ++K       G+ I YG+AKYLRDALP
Sbjct  393   NETIMAALTERKNVIVMADEAHRTQYGFNAKY-DDK-------GEGIKYGYAKYLRDALP  444

Query  444   NATYIGFTGTPIESHDINTPAVFGNYIDIYDISRAVEDGATVSIYYESRLAKIELSEEGK  503
             NAT++GFTGTP+ S D NT  VFGNYID+YD+++AV DG+TV IYYESR+  ++L++ + 
Sbjct  445   NATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQ-SL  503

Query  504   RLVNELDEKLENQDSQ-----KAKATKLEALVGSTSRLKQIAKDIVKHFETRSSKLGGKG  558
              L +  ++  E+Q+ +     K+K +++EAL G+ +R+  +AKDI++HFETR   + GKG
Sbjct  504   DLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKG  563

Query  559   MIVSISRSVAIKLYDEIIKIRPSWHSDELSSGAIKVVMTSSSSDGVEFSKHHTSKIQKQF  618
             MIV++SR +A+ LYDEII+++P WHSD+   G IKVVMT+SSSD   F +H  +K ++  
Sbjct  564   MIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSV  623

Query  619   LANRMRNIDDELKLVIVVDMWLTGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPS  678
             L +RM++++DEL+LVIV DMWLTGFDVPS+HT+YIDKPMKGHNLMQAIARVNRV+KDKP+
Sbjct  624   LEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPG  683

Query  679   GLVVDYLGIASDLKKALSFYSESGGKGDIITTQEDAVKVMIEKLEIVEQML-PNDY----  733
             GL+VDY+GIA  LK AL  Y+ES+     I T + AV +M+ K +++++ML   DY    
Sbjct  684   GLIVDYVGIAESLKEALKEYTESDQAQTAIDT-DKAVELMLLKYDVIQDMLYNLDYSKFN  742

Query  734   -----EKYFELDTGAKLEYILDVEEHILSNEDGKNRFIKEFAALDKAYTIAMPHEKALSI  788
                  E+Y+ +  +  ++Y++++       ED ++RFIK  + L+KA+++   +  A  +
Sbjct  743   SEKKSERYYTI--SNTMDYVIGL------GEDERQRFIKTVTELGKAFALCATEPTAQEL  794

Query  789   KNKIAFMYAIKARFLKF-----AKenenenllnQALIKQVVDKAIVSSKVVDIFDASGIK  843
             ++ IAF  A+KA ++K+          +     +A I+Q+V +++V+  V+D++++ G+ 
Sbjct  795   NDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLE  854

Query  844   KPDISILSDEFLLEVKNMKRKNLAFEMLKKILNDEIKAREKLSLTKAKKLAQMLSDAIKK  903
             +PD+SILSD+FL +V  +K+KN+A E+L+++L++++K+  K + T +K++++ML+++I+K
Sbjct  855   QPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINK  914

Query  904   YNNKLISSSEALDELINMSKSIVSMEDEAKKLGLKDYEYAFYSALACNDEYEKILGNEKL  963
             YN++ I +S  ++ELI+++K I   ++ ++ LGL+  E AFY AL  ++   K + + KL
Sbjct  915   YNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKL  974

Query  964   LALVSEILQIIKNNVSIDWMIKEnvrarlrvavkrvlnkYGYPPDMQQLAIDGVLAQAEI  1023
              A+  E+ + +K+N+S+DW  +++ +A++RVAV+R+L+KYGYPPD+Q++A++ V+ QAE+
Sbjct  975   RAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAEL  1034

Query  1024  LAKE  1027
             +A +
Sbjct  1035  MASN  1038

135) A911_07460 in NC_018709


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  763 bits (2888),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 458/1024 (45%), Positives = 740/1024 (73%), Gaps = 53/1024 (5%)

Query  31    RATDEVLLETSLVNALCRLNPQLDLSKANEIYKELKSKNHLSLLDSNENFHYKLVNGVNI  90
             ++  +V+L+  L +AL ++N++++    +    EL   +  +LL++N  FH +L+NG++I
Sbjct  41    KSDKDVVLHERLEKALRKINSDIHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEI  100

Query  91    NT-TKDGESRADIINLIDFNNASNNEFIATNQLSITEAKENKIPDVVLYINGIPLVLMEL  149
             +    +G+S  +I++++DF+++ NN+F+A NQ+++ ++   K PD+VL+ING+P+V++EL
Sbjct  101   EDYDDEGQSIVEIVKIVDFEHPQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIEL  160

Query  150   KSPSDENATINSAYNQINTYKQTIPSIFTYNAFCVISDGYFARAGSISADFSRFMAWKSS  209
             K++++E   ++ +Y+Q++TYK  IP +FT+N   V SDG  ++AGS++A++ RFM+W+S 
Sbjct  161   KNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSK  220

Query  210   DGINYAPNKSLEIKTLIDGMLNPKTLLDIICNFIVFEKEQIRDLNGILSIKTTKKIACYH  269
             DG   +++    +  LI+GMLNPKTLLD+I  F++F+ +   +++ IL        A YH
Sbjct  221   DGETESSSSLASLDVLINGMLNPKTLLDLIRYFVLFQDDGKGHISKIL--------AAYH  272

Query  270   QYYAVNKAISRTITASSKDGDKKGGVVWHTQGSGKSLSMVFYSAKAIKALNNPTILLITD  329
             QYYAVNKA+ R++ ASS +GD KGGV+WHTQGSGKSL+MVF+S+K I+ LNNPT++++TD
Sbjct  273   QYYAVNKAVDRALLASSGQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQMLNNPTLVIVTD  332

Query  330   RNDLDDQLFGTFASCAN-----LLRQEPKQANDKEHLKELLRVASGGVVFTTIQKFSPE-  383
             RNDLD+QL++TF          LLRQ PKQA+ + +LK LL V SGG+VFTT+QKF PE 
Sbjct  333   RNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQ  392

Query  384   NDNVFECLSLRDNIIVIADEAHRTQYGFDAKVVEEKSKSGDVLGQKIVYGFAKYLRDALP  443
             N+ +   L+ R N+IV+ADEAHRTQYGF+AK  ++K       G+ I YG+AKYLRDALP
Sbjct  393   NETIMAALTERKNVIVMADEAHRTQYGFNAKY-DDK-------GEGIKYGYAKYLRDALP  444

Query  444   NATYIGFTGTPIESHDINTPAVFGNYIDIYDISRAVEDGATVSIYYESRLAKIELSEEGK  503
             NAT++GFTGTP+ S D NT  VFGNYID+YD+++AV DG+TV IYYESR+  ++L++ + 
Sbjct  445   NATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQ-SL  503

Query  504   RLVNELDEKLENQDSQ-----KAKATKLEALVGSTSRLKQIAKDIVKHFETRSSKLGGKG  558
              L +  ++  E+Q+ +     K+K +++EAL G+ +R+  +AKDI++HFETR   + GKG
Sbjct  504   DLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKG  563

Query  559   MIVSISRSVAIKLYDEIIKIRPSWHSDELSSGAIKVVMTSSSSDGVEFSKHHTSKIQKQF  618
             MIV++SR +A+ LYDEII+++P WHSD+   G IKVVMT+SSSD   F +H  +K ++  
Sbjct  564   MIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSV  623

Query  619   LANRMRNIDDELKLVIVVDMWLTGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPS  678
             L +RM++++DEL+LVIV DMWLTGFDVPS+HT+YIDKPMKGHNLMQAIARVNRV+KDKP+
Sbjct  624   LEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPG  683

Query  679   GLVVDYLGIASDLKKALSFYSESGGKGDIITTQEDAVKVMIEKLEIVEQML-PNDY----  733
             GL+VDY+GIA  LK AL  Y+ES+     I T + AV +M+ K +++++ML   DY    
Sbjct  684   GLIVDYVGIAESLKEALKEYTESDQAQTAIDT-DKAVELMLLKYDVIQDMLYNLDYSKFN  742

Query  734   -----EKYFELDTGAKLEYILDVEEHILSNEDGKNRFIKEFAALDKAYTIAMPHEKALSI  788
                  E+Y+ +  +  ++Y++++       ED ++RFIK  + L+KA+++   +  A  +
Sbjct  743   SEKKSERYYTI--SNTMDYVIGL------GEDERQRFIKTVTELGKAFALCATEPTAQEL  794

Query  789   KNKIAFMYAIKARFLKF-----AKenenenllnQALIKQVVDKAIVSSKVVDIFDASGIK  843
             ++ IAF  A+KA ++K+          +     +A I+Q+V +++V+  V+D++++ G+ 
Sbjct  795   NDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLE  854

Query  844   KPDISILSDEFLLEVKNMKRKNLAFEMLKKILNDEIKAREKLSLTKAKKLAQMLSDAIKK  903
             +PD+SILSD+FL +V  +K+KN+A E+L+++L++++K+  K + T +K++++ML+++I+K
Sbjct  855   QPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINK  914

Query  904   YNNKLISSSEALDELINMSKSIVSMEDEAKKLGLKDYEYAFYSALACNDEYEKILGNEKL  963
             YN++ I +S  ++ELI+++K I   ++ ++ LGL+  E AFY AL  ++   K + + KL
Sbjct  915   YNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKL  974

Query  964   LALVSEILQIIKNNVSIDWMIKEnvrarlrvavkrvlnkYGYPPDMQQLAIDGVLAQAEI  1023
              A+  E+ + +K+N+S+DW  +++ +A++RVAV+R+L+KYGYPPD+Q++A++ V+ QAE+
Sbjct  975   RAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAEL  1034

Query  1024  LAKE  1027
             +A +
Sbjct  1035  MASN  1038

136) CYCME_0985 in NC_021917


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  758 bits (2867),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 476/1073 (45%), Positives = 748/1073 (70%), Gaps = 57/1073 (5%)

Query  3     NEQTLEENCLAWFEQGGWEVFNGADIAPDSPYPQRDDFSQVVLNGQLRTAFERINTHIPE  62
             NE+ LE+  L W+E  + +  +G +I+  +  P+R    +VVL+ +L  A+ +IN++I  
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  63    QQIEHCFDQFKAIVLKPESLDLITNNRAFHRLLLEGVPVEYKKDDGESSTDGETVSDHAF  122
             + IE  +++   + L   + +L+ NN +FH  L++G+ +E      +   +G+++ +   
Sbjct  66    RFIEKAIHE---LTLEKSP-NLLENNLTFHENLINGIEIE------DYDDEGQSIVEIVK  115

Query  123   IIDFDNLNNNTFSVVNQFTITGTKQPRRPDVICFINGLPIAVLELKSPSDENADIWDAFN  182
             I+DF++ +NN F  VNQFT+      +RPD++ FINGLPI V+ELK++++E  ++ D+++
Sbjct  116   IVDFEHPQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYH  175

Query  183   QLQTYKDEVSDLFIFNEALVVSDGYTARVGSLTANQERFMPWRTIKSENDKPLLEWQLET  242
             QL+TYK  +++LF FNE LV SDG  ++ GSLTAN +RFM WR+  +E + +     L+ 
Sbjct  176   QLETYKMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDV  235

Query  243   MVRGFFDRELLLDYIRFFVLFETDG-EQIIKKIAGYHQFHAVREAVKATVIAAQQIDGVT  301
             ++ G ++   LLD IR+FVLF+ DG  +I K +A+YHQ+ AV  AV  +++A+       
Sbjct  236   LINGMLNPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSG-----  290

Query  302   EKRATYADEVVPGSKKAGVVWHTQGSGKSISMCCYAGMLLQQKAMNNPTLIVVTDRNDLD  361
                         G  K+GV+WHTQGSGKS++M  ++G L+Q   +NNPTL++VTDRNDLD
Sbjct  291   -----------QGDGKGGVIWHTQGSGKSLTMVFFSGKLIQ--MLNNPTLVIVTDRNDLD  337

Query  362   GQLYATFCN-----AVELLKQTPVQASDRDALRQLLAERESGGIIFTTVQKFALLDDEKH  416
              QLY+TF +     +  LL+QTP QA  R  L+ LL+  ESGGI+FTT+QKF   ++E  
Sbjct  338   NQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETI  396

Query  417   HPILNDRHNIVVISDEAHRSQYGLKATLSADGQ-YKFGYAKHMRDALPSASFIGFTGTPI  475
              + L +R N++V++DEAHR+QYG++A     G+  K+GYAK +RDALP+A+F+GFTGTP+
Sbjct  397   MAALTERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPV  456

Query  476   SQEDKDTRAVFGGYVSIYDIQDAVDDGATVPIYYESRLAKLDLNHA-EIAELSdqvdevv  534
             +  DK+T+ VFG Y+ +YD+ +AV DG+TV IYYESR+  L+L ++ ++ E      + +
Sbjct  457   ASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSLDLDE----AYNDI  512

Query  535   edeedvSNREKTKGEWSRLEKLVGATPRLSQVAADLIEHFETRNATMDGKAMIVAMSRDI  594
              ++++   +++ K+ WSR+E L GA PR+  +A D+I+HFETR+ +M GK+MIV+MSR I
Sbjct  513   TEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRI  572

Query  595   CAHLYNEIIALRPEWHSDDPEKGAIKIVMTGSASDKPLLQPHIYNkktkkrlekrfkDLN  654
               +LY+EII L+PEWHSDD +KG IK+VMTGS+SD   +Q HI  KK +  LEKR KD+N
Sbjct  573   AVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVN  632

Query  655   DPLKLVIVRDMWLTGFDAPCCHTMYVDKPMKGHNLMQAIARVNRVFKNKPGGLVVDYIGI  714
             D L+LVIVRDMWLTGFD P  HTMY+DKPMKGHNLMQAIARVNRVFK+KPGGL+VDY+GI
Sbjct  633   DELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGI  692

Query  715   ANELKQALKTYTDSKGKGEPTLNAEEAFSILLEKIDAIRGMFGKTPKSDGLDISGYESQA  774
             A+ LK+ALK YT+S ++++ +++++ A  ++L K D I++M+        LD S ++S+ 
Sbjct  693   AESLKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDML------YNLDYSKFNSEK  745

Query  775   HK----LLVPAANYVLGL-EDGKKRFLDLVLAATKSYSLCSTLDEAKELRKEIAFYSAIK  829
                    +  + +YV+GL ED ++RF+  V    K+++LC+T   A+EL  EIAF+ A+K
Sbjct  746   KSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVK  805

Query  830   AAISKFTSVDR----KRTQEEKNSALKQILDNAVIAEGVADVFALCGLDKPNIGLLSDEF  885
             A++ K+    +    ++T  E ++ ++Q++ ++V++E+V DV+   GL++P++++LSD+F
Sbjct  806   AGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDF  865

Query  886   LEDVRQMPERNLAVellekllkddIKAKTRNNVVQEKKYADRLQETLRKYNNRAIETAQV  945
             L DV  + ++N+AVELL++LLK+++K+  + N    K++++ L +++ KYN+R+IET++V
Sbjct  866   LKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKV  925

Query  946   IEELIQMAKEFQEEMMREAELGLNPDEIAFYDALANNESAVRELGDEILKKIAVEITDKL  1005
             IEELIQ+AK++++E  R  ELGLN+DEIAFYDAL ++E+A + + D  L+ IA E+T  +
Sbjct  926   IEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTV  985

Query  1006  RKSTTVDWQVRDSVRAKLKILVRRTLQRYKYPPDKAAEAVELVLKQAESLSNS  1058
             + + +VDW  RDS +AK+++ VRR L++Y YPPD    AVE V+ QAE ++++
Sbjct  986   KENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

137) Jden_2251 in NC_013174


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  755 bits (2856),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 459/1048 (44%), Positives = 738/1048 (71%), Gaps = 24/1048 (2%)

Query  4     FNENTVELAALEYFAELGYRTLHGPDIAPGEPGAERDSYEEVFLWGRLRDAIRRINPGTS  63
             FNE+ +E   LE +  L+Y    G +I+    ++ER S  +V L  RL  A+R+IN++  
Sbjct  5     FNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIH  64

Query  64    PALVDEAIKRVRRAESQSPIDENYRLHQLITEGVPVEHRDADGALRTTRLWLVDFERPEN  123
             P +++ AI  +    S + +++N  +H+ + +G+ +E+ D +G      + +VDFE+P+N
Sbjct  65    PRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQN  124

Query  124   NDWVAINQFTIVENGKNRRPDvlvlvnglplallelKNPTAEHATLKSAWNQVQTYRQDI  183
             ND +A+NQFT+V+ +  +RPD+++++NGLP+ ++ELKN+T E   +  + +Q++TY+  I
Sbjct  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  184   PSVFVPNAVTVITDGTSAAMSSYAGAFEHYAPWKTIEG-REVVSDGPALEVLIKGVFEPK  242
             P +F  N V V +DG ++  +S ++ ++++  W++ +G  E  S  ++L+VLI+G+++PK
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPK  244

Query  243   RFLDLLQNFIVFSDETATDKATGQPTRLLVKRVAKYHQYWAVNAAVESTVQASRPDGDRR  302
              +LDL++ F++F D+     + G+ +++L    A YHQY AVN AV+ ++ AS  +GD +
Sbjct  245   TLLDLIRYFVLFQDD-----GKGHISKIL----AAYHQYYAVNKAVDRALLASSGQGDGK  295

Query  303   GGVVWHTQGSGKSFEMVFYAAKIMRDSRMANPTLVFITDRNDLDDQLFGETFAPAR----  358
             GGV+WHTQGSGKS+ MVF+++K+++   + NPTLV++TDRNDLD+QL++ TF  ++    
Sbjct  296   GGVIWHTQGSGKSLTMVFFSGKLIQ--MLNNPTLVIVTDRNDLDNQLYS-TFVKSKGRSG  352

Query  359   --ILPETPVQATTRTDLRSKLKRASGGIVFTTLQKFAPGEDGDANPVLTDRCNVVVVADE  416
               +L +TP QA TR +L+S L   SGGIVFTT+QKF P ++    + LT+R NV+V+ADE
Sbjct  353   KGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADE  412

Query  417   AHRSQYGFGETLDRHGR-LRAGLAKHMRDALPGATYLGFTGTPIESGDKSTRSVFGDYVD  475
             AHR+QYGF    D  G  ++ G AK +RDALP AT++GFTGTP+ S DK+T+ VFG+Y+D
Sbjct  413   AHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYID  472

Query  476   VYDLTRAVEDGATVKIFYESRlakidlsdddlaaldeladeitetveedaataaKSRWSR  535
             VYD+T+AV DG+TVKI+YESR+  ++L++              +  +       KS+WSR
Sbjct  473   VYDMTQAVADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQRL--KSKWSR  530

Query  536   LEAIVGADSRLDLIARDIVEHWEKRREALFGKGMIVTMSRRIAVRLYEKIVALRPDWHSD  595
             +EA+ GA +R++ +A+DI++H E R++A+ GKGMIVTMSRRIAV LY+ I+ L+P+WHSD
Sbjct  531   IEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSD  590

Query  596   DPAKGKIKVVMTGSAADPAEFQPHIYPKDVRKDLKLRAKNPDDELELVIVRDMWLTGFDA  655
             D  KG IKVVMTGS++DP+ FQ HI PK  R  L  R K+ +DEL+LVIVRDMWLTGFD 
Sbjct  591   DDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDV  650

Query  656   PSMHTMYVDKTMQGAGLMQAIARVNRTFRDKPGGLIVDYIGVFANLQAALQEYSPSDRDQ  715
             PSMHTMY+DK M+G  LMQAIARVNR F+DKPGGLIVDY+G+  +L+ AL+EY+ SD+ Q
Sbjct  651   PSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQ  710

Query  716   AGVPIDEMVAVMLEKHDIIRGLLHGVDYDSSPTLTASQRLAEYAKVLDFVMA-DPDRTKR  774
             +++  D  V +ML K D+I+++L  +DY    +   S+R    ++ +D+V++ + D  +R
Sbjct  711   TAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQR  770

Query  775   FNDQVlalakafalagaRDEAAAIRDDVRLFTDVRAAILK-IQNPDSGRGGSGAVEIDTA  833
             F   V  L+KAFAL ++   A  + D++ +F  V+A+++K +Q P  G+    + E+++ 
Sbjct  771   FIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAE  830

Query  834   LGQLLNEAVAANQVVDIYKLAGVETPELSILSDEFLDSLADKDKPNLQMGLLRRLLNDQI  893
             + QL++++V +++V+D+Y+  G+E P+LSILSD+FL  + +  + N+ + LL RLL++Q+
Sbjct  831   INQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQV  890

Query  894   RTVQRTNLVQARKFSELLDEAINRYTNRSLTTAEIIAELVKLAKQMRDDQKRNEELGLSA  953
             +++ +TN   +++FSE+L+++IN+Y +RS+ T+ +I EL++LAK+++++Q+R +ELGL++
Sbjct  891   KSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNS  950

Query  954   AEVALYDAIAQNDAAVMHMGDETLKKIAVDLVWAVRTSVVIDWDQKESVRAAMRSKVRRL  1013
              E+A+YDA+  +++A   M D  L+ IA +L  +V+ ++ +DW +++S +A MR  VRRL
Sbjct  951   DEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRL  1010

Query  1014  LAKYDYPPDAEKKAIELVLEQAELFARG  1041
             L KY+YPPD +K A+E V+EQAEL A  
Sbjct  1011  LKKYGYPPDLQKMAVEQVVEQAELMASN  1038

138) Maqu_3386 in NC_008740


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  754 bits (2854),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 465/1066 (44%), Positives = 744/1066 (70%), Gaps = 51/1066 (4%)

Query  2     TEDQLEQQCLQWFAEGGWEIAHGPDLASDGEAPERADYRQVLLLADLEAAIQRINPHLPQ  61
              ED+LEQ  L+W+   + +   G +++  G APER   ++V+L   LE A+++IN+++  
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62    SAVEQAVAVVRKPESLDVVISNRAFHRLLLDGVPVE-YKRDDKVVHDQAFLVDFGDLTAN  120
               +E+A+  +    S +++ +N +FH  L++G+ +E Y  +++ + +   +VDF +   N
Sbjct  66    RFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNN  125

Query  121   RFRAINQFTIEGSKQLRRPDVICFINGLPLAVLELKSPGAENVNIWDAYNQVQTYKDECS  180
              F A+NQFT+  +   +RPD++ FINGLP+ V+ELK++  E V + D+Y+Q++TYK   +
Sbjct  126   DFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  181   DLFAYNEAAVISDGYLARVGSLTASQERYMPWRTLRHEDDKPLLEWQLETMVRGFFDREL  240
             +LF++NE  V SDG  ++ GSLTA+ +R+M WR+   E + +     L+ ++ G ++   
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPKT  245

Query  241   FLDYIRYFVIFETDSDKLIKKI-AGYHQFHAVCEAVKATVIAAQAPEHGHWAKEKRATYG  299
             +LD IRYFV+F+ D+   I KI A+YHQ+ AV  AV  +++A+ +  +G           
Sbjct  246   LLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDG-----------  294

Query  300   DEVLPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQPEMNNPTLIVVTDRNDLDGQLFATF  359
                     K+GV+WHTQGSGKS++M  ++GKL+Q   +NNPTL++VTDRNDLD QL++TF
Sbjct  295   --------KGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTF  344

Query  360   -----SAVRELLKQEPVQADDRDTLRRLLSERESGGIIFTTVQKFALLNDESGHPILNDR  414
                   + + LL+Q P QA+ R  L+ LLS  ESGGI+FTT+QKF   ++E+  + L +R
Sbjct  345   VKSKGRSGKGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTER  403

Query  415   HNIVVISDEAHRSQYGLKATLK-KDGTYKFGYARHMRDALPNASFIGFTGTPIESEDKDT  473
              N++V++DEAHR+QYG++A    K+   K+GYA+ +RDALPNA+F+GFTGTP+ S DK+T
Sbjct  404   KNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNT  463

Query  474   RAVFGDYVSIYDIQDAVDDGATVPIFYESRLAKLDINRE-QIEELSdqveevveddedvG  532
             + VFG+Y+ +YD+ +AV DG+TV I+YESR+  L++ +  +++E      + + +D++ +
Sbjct  464   QMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSLDLDE----AYNDITEDQEED  519

Query  533   SREKTKGEWSRLEKLVGAGPRLKQVAEDLVNHFETRSSTIDGKAMIVAMSREIAVHLYNE  592
              +++ K+ WSR+E L GA PR+  +A D+++HFETR  ++ GK+MIV+MSR IAV+LY+E
Sbjct  520   VKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDE  579

Query  593   IVALRPEWHDDDPEKGAIKIVMTGSASDRALLQPHIHNKQTKKRFEKRFKDINDPLRLVI  652
             I+ L+PEWH DD +KG IK+VMTGS+SD + +Q HI  K+ +  +EKR KD+ND L+LVI
Sbjct  580   IIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVI  639

Query  653   VRDMWLTGFDAPCCHTMYVDKPMKGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQA  712
             VRDMWLTGFD P  HTMY+DKPMKGHNLMQAIARVNRVFKDKPGGL+VDY+GIA+ LK+A
Sbjct  640   VRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEA  699

Query  713   LKTYTDAKGKGSPTHSAEEAYAILLEKLDIIHGMFAPGPKGKGFSYSGFDTEPRK----V  768
             LK YT++ +++  +  ++ A  ++L K D+I++M+        + YS F++E +      
Sbjct  700   LKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLY------NLDYSKFNSEKKSERYYT  752

Query  769   LLATANYVLSL-EDGKKRFLDTVLAMNKAFSLCATLDEAQTLQKEVAFLSQVKTAITKFT  827
             +  T +YV++L ED ++RF+ TV  + KAF+LCAT   AQ L+ E+AF+  VK+++ K+ 
Sbjct  753   ISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLL  812

Query  828   SVDK----KLTEEEKNTALRQILNNALIAEGVTDVFALCGLDKPNIGLLSDEFLEDVRQM  883
                K    + T  E ++ + Q++++++++E+V DV+   GL++P++++LSD+FL DV  +
Sbjct  813   QPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGL  872

Query  884   PYKNFAVellekllkddIKAKTRNNVVQEKKYADRLQETLRKYNNRGIETAQVIEELIAM  943
               KN AVELL++LLK+++K+  + N    K++++ L +++ KYN+R+IET++VIEELI +
Sbjct  873   KQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQL  932

Query  944   AKQFQAEMERDAALGLNPDEVAFYDALASNESAVRELGDEILKKIAVEITDKLRKSTTVD  1003
             AK+++ E +R+  LGLN+DE+AFYDAL S+E+A + + D  L+ IA E+T  ++ + +VD
Sbjct  933   AKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVD  992

Query  1004  WQVRESVRAKLRILVRRTLQRYKYPPDKAPAAIELIMEQAEALSNH  1049
             W  R+S +AK+R+ VRR L++Y YPPD    A+E ++EQAE ++++
Sbjct  993   WSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

139) Noc_1804 in NC_007484


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  753 bits (2851),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 464/1080 (43%), Positives = 741/1080 (69%), Gaps = 68/1080 (6%)

Query  2     TEEQLEQQCLAWFAEGGWELAHGSD-----LAPGRADYRQVWLLADLEAAIRRINPHLPE  56
              E++LEQ  L W+   + +   G++     LAP R   ++V L   LE A+R+IN+++  
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  57    SCIEQVVAVVGKPESLDTVVSNRAFHRLLLEGVPVE-YKTLSSLSPWERAGVREREEKIV  115
               IE+ +  +    S + + +N +FH  L++G+ +E Y               + E + +
Sbjct  66    RFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDY---------------DDEGQSI  110

Query  116   HDRALLIDFDDLNANRFRAINQFTLLGSKQLRRPDIICFINGLPLAVLELKSPHAENVDI  175
              +   ++DF++ + N F A+NQFT++ +   +RPDI+ FINGLP+ V+ELK++  E V++
Sbjct  111   VEIVKIVDFEHPQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGV  170

Query  176   WDAFHQLQTYKDEIPELFVFNEALVISDGYHARVGSLTANQERFMPWRTLKHEDDKPLLD  235
              D++HQL+TYK  IP+LF FNE LV SDG +++ GSLTAN +RFM WR+   E + +   
Sbjct  171   EDGYHQLETYKMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSL  230

Query  236   WQLETLVRGFFDRELFLDYLRYFVIFETDS-GRLSKKIAGYHQFHAVREAVKATVIAAQE  294
               L+ L+ G ++   +LD +RYFV+F+ D+ G++SK +A+YHQ+ AV  AV  +++A+  
Sbjct  231   ASLDVLINGMLNPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSG  290

Query  295   PRQRWAGEKRATYADDLVPGSKKAGVVWHTQGSGKSLSMCCYAGKLLQQPEMNNPTLMVV  354
                                G  K+GV+WHTQGSGKSL+M  ++GKL+Q   +NNPTL++V
Sbjct  291   Q------------------GDGKGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVIV  330

Query  355   TDRNDLDGQLFATF-----SAAKELLKQEPVQAEDRDTLRRLLAERASGGIIFTTVQKFA  409
             TDRNDLD QL++TF      ++K LL+Q P QAE R  L+ LL+   SGGI+FTT+QKF 
Sbjct  331   TDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFE  389

Query  410   LLDGENDHPILNDRHNIVVISDEAHRSQYGLKATLKKDGR-YTFGYAKHMRDALPNASFI  468
               + E   + L +R N++V++DEAHR+QYG++A     G    +GYAK +RDALPNA+F+
Sbjct  390   PEQNETIMAALTERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFV  449

Query  469   GFTGTPIANEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDINRELIEKLSd  528
             GFTGTP+A+ DK+T+ VFG+Y+ +YD+ +AV DG+TV IYYESR+  L++ + L   L +
Sbjct  450   GFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSL--DLDE  507

Query  529   qveavvedeedLGQREKTKGEWSRLEKLVGSGPRLKQVAADLVRHFEIRSQSMDGKAMIV  588
               + + ED+E+ + +++ K+ WSR+E L G+ PR+  +A D+++HFE R Q+M GK+MIV
Sbjct  508   AYNDITEDQEE-DVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIV  566

Query  589   AMSREICVHLYNEIVALRPDWHDPDPEKGAIKIVMTGSASDRPLLQPHLYNQQTKKRLEK  648
             +MSR I V+LY+EI+ L+P+WH  D +KG IK+VMTGS+SD   +Q H+  ++ +  LEK
Sbjct  567   TMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEK  626

Query  649   RFKDIYDPLKLVIVRDMWLTGFDAPCCHTMYVDKPMKGHNLMQAIARVNRVFKNKPGGLV  708
             R KD+ D L+LVIVRDMWLTGFD P  HTMY+DKPMKGHNLMQAIARVNRVFK+KPGGL+
Sbjct  627   RMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLI  686

Query  709   VDYIGIANALKQALKTYTDAKGKGEPTHSAEEAFAVLLEKLDIIHGLFAKTPQNAGFDYS  768
             VDY+GIA++LK+ALK YT++ ++++ +  ++ A  ++L K D+I++++ +      +DYS
Sbjct  687   VDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYN------LDYS  739

Query  769   SFEHEATR----LLIPTANYILSL-EGGKKRFLDTILAVNMAYSLCGTLEEARAYHKEVA  823
              F+ E        +  T +Y+++L E+ ++RF+ T+  +  A++LC+T   A+  + E+A
Sbjct  740   KFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIA  799

Query  824   FLSAVKAALTKHTRVDK----KLTQEEKNSALKQILDNALVAEGVTDVFALCGLDKPNIG  879
             F+ AVKA+L K  +  K    + T  E ++ ++Q++ +++V+E+V DV+   GL++P+++
Sbjct  800   FFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLS  859

Query  880   LLSEEFLEDVRRMPYKNFAVELLEKLLKDNIKAKTRNNVVQEKKYADRLQETLRQYNNRG  939
             +LS++FL DV  +  KN AVELL++LLK+++K+  + N    K++++ L +++ +YN+R+
Sbjct  860   ILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRS  919

Query  940   IETAQVIEELIAMAKQFQAELERDEALGLNPDEVAFYDALANNESAVRELGDETLKKIAV  999
             IET++VIEELI +AK+++ E +R++ LGLN+DE+AFYDAL ++E+A + + D  L+ IA 
Sbjct  920   IETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAH  979

Query  1000  EITDKLRRSTTVDWQVRESIRAKLRILVRRTLQRYKYPPDKAPEAVELILQQAEVLSDEK  1059
             E+T  ++ + +VDW  R+S +AK+R+ VRR L++Y YPPD    AVE +++QAE+++ ++
Sbjct  980   ELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASNQ  1039

140) BN4_12249 in NC_020409


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  752 bits (2844),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 464/1052 (45%), Positives = 739/1052 (71%), Gaps = 35/1052 (3%)

Query  11    NEDALEKLAISWFEDEGYTNVHGPDLNPEVDGSGARARLDDVLLLNPLRAAIERINPQLP  70
             NED LE++ + W+E  +Y    G +++    ++  ++   DV+L + L  A+ +IN+++ 
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSD-KDVVLHERLEKALRKINSDIH  64

Query  71    ASTVDEVLHLVQKLSHPITVKANQEFHRLLREGVDV-SYKRDGENVEDRAFLIDFHDVNA  129
             +  ++  +H +     P  +  N  FH  L +G+++  Y  +G+++ +   ++DF++ + 
Sbjct  65    PRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQN  124

Query  130   NTFWIVDQLTIRGSKGNRRPDLIVYLNGLPLAVIELKSPVKEDVGVDEAFHQLQTYKQEL  189
             N F  V+Q+T+  +   +RPD+++++NGLP+ VIELK++ +E VGV++++HQL+TYK  +
Sbjct  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  190   VDLAMFNEALVASDGIQARVGSLTANREWFLPWRAVKSEEDRPSFEYELKGIVKGFFDRT  249
              +L  FNE LV+SDGI+++ GSLTAN ++F+ WR+  +E + +S    L  +++G ++  
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPK  244

Query  250   LLLEYIRDFVLFEADDSSTIKKI-ASYHQFHGVRQavaaavkaaSEHAPNELKGRGGVIW  308
              LL+ IR FVLF+ D+ + I KI A+YHQ+ +V +AV  A+ A+S ++     G+GGVIW
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQG----DGKGGVIW  300

Query  309   HTQGSGKSISMCCLAGKLIRHPDLANPTLVVITDRNDLDGQLYETFCK-----AGDLLAD  363
             HTQGSGKS++M  ++GKLI+   L NPTLV++TDRNDLD QLY TF K     + +LL +
Sbjct  301   HTQGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQ  358

Query  364   SPIQADDRGELRQILNEKQSGGIVFTTIQKFSLDKDETKFPVLSDRRNIIVIADECHRSQ  423
             +P QA+ R EL+ +L+  +SGGIVFTT+QKF  +++ET  + L++R+N+IV+ADE HR+Q
Sbjct  359   TPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQ  417

Query  424   YGFKGKLDEKRNAFVAGYAQHMRDALPNATFTGFTGTPISQEDKNTQAVFGEYVSIYDIE  483
             YGF++K D+K +++  GYA+ +RDALPNATF GFTGTP++  DKNTQ VFG+Y+ +YD+ 
Sbjct  418   YGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMT  477

Query  484   QAQLDGATVPIFYESRLAKLDLNQDELPQIdekvdevtedeetSQAEKTKGKWAALAKLV  543
             QA  DG+TV I+YESR+  L+L Q    ++DE  +++TED+E    ++ K+KW+ +  L 
Sbjct  478   QAVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITEDQEEDVKQRLKSKWSRIEALA  535

Query  544   GAEPRIRQVAEDLVDHFEARLEVVDGKAMIVCMSRDICVAMFDALVKLRPQWAGNQLADG  603
             GA PR+  +A D+++HFE+R + + GK+MIV MSR I V ++D +++L+P+W ++     
Sbjct  536   GAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSD-----  590

Query  604   TYDPSDGAIRIIMTASASDRRELQNHHYSKTQKKALEKRFKDLDDPLKIVIVRDMWLTGF  663
               D   G I+++MT+S+SD   +Q H  +K ++  LEKR KD++D L++VIVRDMWLTGF
Sbjct  591   --DDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGF  648

Query  664   DAPCAHTMYIDKPMKGHNLMQAIARVNRVFKGKQGGLVVDYIGIASELKNALHTYTRSGG  723
             D P  HTMYIDKPMKGHNLMQAIARVNRVFK+K GGL+VDY+GIA  LK+AL  YT S+ 
Sbjct  649   DVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQ  708

Query  724   RGGQPTIDVYEAFYVLKEKLQTARDIFHKFDYSAYKT-KAVE---LLPPAADFVVA-TEE  778
               +Q +ID   A  ++  K +  +D++ ++DYS +++ K  E    ++ + D+V++  E+
Sbjct  709   --AQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGED  766

Query  779   RKKEFFDVVVAMTRAQSLCGTLDEAVAIRDEITFFQAVKI----FIDKTTATKGKQTRQE  834
              ++ F+  V  + +A +LC+T   A  + DEI+FF+AVK     +++     K ++T  E
Sbjct  767   ERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAE  826

Query  835   KDAILNQLLARAVVPEGVDDIFALAGLDKPDISILSEEFLDDVRNMEHRNLAVELLEKLL  894
              +A +NQL++++VV E+V D++   GL++PD+SILS++FL DV  + ++N+AVELL++LL
Sbjct  827   VEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLL  886

Query  895   RDEISARSRRNTTQERKFSERLKESLLKYRNRAIETAQVIEELIQMAKDLNEALKRGDKL  954
             ++++ +  + N+T  ++FSE L +S+ KY +R+IET++VIEELIQ+AKD+++  +RG+ L
Sbjct  887   KGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNEL  946

Query  955   GLNPSELAFYDALEENESAVRELGDDVLKKIAKELTEKLRKNVTVDWQHKDSVRAKMRNL  1014
             GLN+ E+AFYDAL  +E+A + + D  L+ IA ELT  ++ N++VDW  +DS +AKMR  
Sbjct  947   GLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVA  1006

Query  1015  VRRILKKYKYPPDAQKEAVAEVLRQAESLADD  1046
             VRR+LKKY YPPD QK AV +V+ QAE +A +
Sbjct  1007  VRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

141) MARHY0349 in NC_017067


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  750 bits (2839),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 460/1064 (44%), Positives = 739/1064 (70%), Gaps = 48/1064 (4%)

Query  2     TEDQLEQQCLEWFAEGGWEIAHGPDLAPDGEAPGRADYRQVLLLADLEAAITRINPHLPQ  61
              ED+LEQ  LEW+   + +   G +++  G AP R   ++V+L   LE A+ +IN+++  
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62    SAVEQAVAVVRKPESLDVVISNRAFHRLLLDGVPVE-YKRDDKVVHDQAFLVDFGDLAAN  120
               +E+A+  +    S +++ +N +FH  L++G+ +E Y  +++ + +   +VDF +   N
Sbjct  66    RFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNN  125

Query  121   RFRAINQFTIEGSKQLRRPDVICFINGLPLAVLELKSPGAENVNIWNAYNQIQTYKDECS  180
              F A+NQFT+  +   +RPD++ FINGLP+ V+ELK++  E V + ++Y+Q++TYK   +
Sbjct  126   DFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  181   DLFAYNEAAIISDGYLARVGSLTATQERYMPWRTLKHEDDKPLLEWQLETMVRGFFDREL  240
             +LF++NE  + SDG  ++ GSLTA  +R+M WR+   E + +     L+ ++ G ++   
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPKT  245

Query  241   FLDYLRYFVIFETDSDKLIKKI-AGYHQFHAVREAVKATVIAAQDISGPGISEKRATYGD  299
             +LD +RYFV+F+ D+   I KI A+YHQ+ AV  AV  +++A+ +               
Sbjct  246   LLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSG---------------  290

Query  300   EVLPGSKKAGVVWHTQGSGKSISMCCYAGKLLQQPEMNNPTLIVVTDRNDLDGQLFATF-  358
                 G  K+GV+WHTQGSGKS++M  ++GKL+Q   +NNPTL++VTDRNDLD QL++TF 
Sbjct  291   ---QGDGKGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFV  345

Query  359   ----SAARELLKQEPVQADDRDTLRRLLSERESGGIIFTTVQKFALLNDESGHPVLNDRH  414
                  +++ LL+Q P QA+ R  L+ LLS  ESGGI+FTT+QKF   ++E+  + L +R 
Sbjct  346   KSKGRSGKGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERK  404

Query  415   NIVVISDEAHRSQYGLKATLK-KDGTYKFGYARHMRDALPNASFIGFTGTPIESEDKDTR  473
             N++V++DEAHR+QYG++A    K+   K+GYA+ +RDALPNA+F+GFTGTP+ S DK+T+
Sbjct  405   NVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQ  464

Query  474   AVFGDYVSIYDIQDAVDDGATVPIFYESRLAKLDINReqieelseqveevveddedvGSR  533
              VFG+Y+ +YD+ +AV DG+TV I+YESR+  L++ +    + + +     +++   + +
Sbjct  465   MVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEE---DVK  521

Query  534   EKTKGEWSRLEKLVGAGPRLKQVAEDLVNHFETRSSTIDGKAMIVAMSREIAVHLYNEIA  593
             ++ K+ WSR+E L GA PR+  +A D+++HFETR  ++ GK+MIV+MSR IAV+LY+EI 
Sbjct  522   QRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEII  581

Query  594   ALRPEWHDDDPEKGAIKIVMTGSASDRPLLQPHIHNKQTKKRFEKRFKDINDPLKLVIVR  653
              L+PEWH DD +KG IK+VMTGS+SD   +Q HI  K+ +  +EKR KD+ND L+LVIVR
Sbjct  582   RLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVR  641

Query  654   DMWLTGFDAPCCHTMYVDKPMKGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALK  713
             DMWLTGFD P  HTMY+DKPMKGHNLMQAIARVNRVFKDKPGGL+VDY+GIA+ LK+ALK
Sbjct  642   DMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALK  701

Query  714   TYTDAKGKGTPTHSAEEAYAILLEKLDIIHGMFAPGPKGEGFSYSGFETE--PHKF--LV  769
              YT++ +++  +  ++ A  ++L K D+I++M+        + YS F++E  ++++  + 
Sbjct  702   EYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLY------NLDYSKFNSEKKSERYYTIS  754

Query  770   PTANYVLSL-EDGKKRFLDTVLAMNKAFSLCATLDEAQALQKEVAFLSQVKTAITKFTSV  828
              T +YV++L ED ++RF+ TV  + KAF+LCAT   AQ L+ E+AF+  VK+++ K+   
Sbjct  755   NTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQP  814

Query  829   DK----KLTEEEKNTALRQILNNALIAEGVTDVFALCGLDKPNIGLLSDEFLEDVRQMPY  884
              K    + T  E ++ + Q++++++++E+V DV+   GL++P++++LSD+FL DV  +  
Sbjct  815   PKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQ  874

Query  885   KNFAVellekllkddIKAKTRNNVVQEKKYADRLQETLSKYNNRGIETAQVIEELIAMAK  944
             KN AVELL++LLK+++K+  + N    K++++ L ++++KYN+R+IET++VIEELI +AK
Sbjct  875   KNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAK  934

Query  945   QFQAELERDAALGLNPDEVAFYDALASNESAVRELGDETLKKIAVEITDKLRKSTTVDWQ  1004
             +++ E +R+  LGLN+DE+AFYDAL S+E+A + + D  L+ IA E+T  ++ + +VDW 
Sbjct  935   DIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWS  994

Query  1005  VRESVRAKLRILVRRTLQRYKYPPDKAPAAIELIMEQAEALSNH  1048
              R+S +AK+R+ VRR L++Y YPPD    A+E ++EQAE ++++
Sbjct  995   KRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

142) Calow_2045 in NC_014657


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  749 bits (2835),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 464/1052 (45%), Positives = 736/1052 (70%), Gaps = 60/1052 (5%)

Query  8     ESVVEQAAIKWFKDIGYEYLHGSKIPIE----DREDYREVILKNRLYKALIRLNPELPLE  63
             E  +EQ  + W+  ++Y+Y  G+ I++     +R   ++V+L +RL KAL ++N+++   
Sbjct  7     EDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHPR  66

Query  64    CIEEAVRQLKNLQYPRIELNNREIHKIYRNGAKVTRRNSEGEEVGEIVKIFDYENPKNND  123
              IE A+++L   + P +  NN  +H    NG  +   + EG+ + EIVKI D+E+P+NND
Sbjct  67    FIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNND  126

Query  124   FLVCNQVKI-KGAGVRIPDIVVYINGLPVGLFELKNPLDEAATIEGAYRQLELYKRDIPD  182
             FL  NQ  + +G   + PDIV++INGLP+ ++ELKN+ +E+  +E++Y+QLE YK  IP+
Sbjct  127   FLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQ  186

Query  183   IFAYNEICVVSDGNKAKAGTLTAPWERFSAWKSIDG-VSSVEGMPELEVLIKGMFDKRRV  241
             +F++NE+ V SDG ++KAG+LTA  +RF +W+S DG   S  +++ L+VLI+GM++ + +
Sbjct  187   LFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPKTL  246

Query  242   LDIIRNFITF-STVKDEVIKIMAMYHQYYGVNKAVEETIRATSPGGDRRIGTFWHTQGSG  300
             LD+IR F+ F    K+++ KI+A YHQYY+VNKAV+ ++ A+S  GD + G +WHTQGSG
Sbjct  247   LDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQGSG  306

Query  301   KSLSMVFYTGKIIELKELQNPTIVVITDRNDLDDQLYETFCNASD------LIPYPKQAE  354
             KSL+MVF++GK+I++  L+NPT+V++TDRNDLD+QLY TF ++ +      L   PKQAE
Sbjct  307   KSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAE  364

Query  355   SVEDLKEKLSQVAAGGIFFTTIQKFQAEAEEVSEVVDPklkkalkkgkTYPLLSDRSNII  414
             +  +LK  LS V +GGI FTT+QKF++E +E   ++ +              L++R N+I
Sbjct  365   TRKELKSLLS-VESGGIVFTTMQKFEPEQNET--IMAA--------------LTERKNVI  407

Query  415   VIVDEAHRSHYEFID-----------GFAKYIRQALPNASFIGFTGTPIDLEDRSTLQVF  463
             V+ DEAHR++Y F             G+AKY+R+ALPNA+F+GFTGTP+   D++T  VF
Sbjct  408   VMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVF  467

Query  464   GDYISIYDMKQAVEDKAIVPIYYEGRLVKLHLINE-DIDRDFeevtegeeeevKNKLKTK  522
             G+YI +YDM QAV D + V IYYE+R++ L+L +  D+D  ++++TE++EE+VK++LK+K
Sbjct  468   GNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQRLKSK  527

Query  523   WAALEALVGTKERIETIARDIVEHFEERCKVLEGKGMIVCMSRRICVDLYNEIIKLRPHW  582
             W+ +EAL G+K R+E++A+DI++HFE R + + GKGMIV MSRRI VDLY+EII+L+P+W
Sbjct  528   WSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEW  587

Query  583   HSDDLDKGVIKIVMSGNPSKDPKDFLPHLYTKLQIKEIEKRMKDPNDPLKLVIVRDMWLT  642
             HSDD DKGVIK+VM+G++S DP  F  H+  K +   +EKRMKD ND L+LVIVRDMWLT
Sbjct  588   HSDDDDKGVIKVVMTGSSS-DPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLT  646

Query  643   GFDVPCLHTMYIDKPMRGHNLMQAIARVNRVFKDKPAGLVVDYIGIADDLKLALANYTRS  702
             GFDVP +HTMYIDKPM+GHNLMQAIARVNRVFKDKP+GL+VDY+GIA+ LK AL +YT  
Sbjct  647   GFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYT-E  705

Query  703   TGKEAATLPIDEAIRIMQEKYDIVCSYFHGIDFSGWEEKSAEDKLSLLKQAMD-LINKDE  761
             +++  +++  D A+ +M  KYD++   +  +D+S  +     ++   + ++MD +I  +E
Sbjct  706   SDQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGE  765

Query  762   TTKKNFLDQCMALCKAFALVIPREEAMRIRSDVAFFQAVRSNIVK-YTPPKG----LSIE  816
               ++ F+     L KAFAL      A  +  ++AFF+AV++ +VK   PPK      +  
Sbjct  766   DERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPA  825

Query  817   ELDSAIKQIISEGVAASDKPIDIFDAAGLKKPDLSILSEEFLNKLIGHENKNLQIEVLRK  876
             E+++ I+Q++S++V + D  ID++++ GL +PDLSILS++FL+ + G  +KN+ +E+L +
Sbjct  826   EVEAEINQLVSQSVVTED-VIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNR  884

Query  877   LLNDEIKAKIRKNHVKYASFKEMIEKVLNKYHNRAITSAEVIKHLIDLAKEMQNMDKRAK  936
             LL++++K+ ++ N      F EM+ + +NKY++R+I ++ VI +LI+LAK++++ ++R++
Sbjct  885   LLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGN  944

Query  937   EMNLTEEEMAFYDIVCQGEEA--ILNDEEAKEIARELVRIIKSKTEGQVDWTIKENIKAS  994
             E+ L  +E+AFYD +   E A   ++D   + IA+EL + +K +    VDW+ +++ KA 
Sbjct  945   ELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMS--VDWSKRDSAKAK  1002

Query  995   IRATVKRLLRRKGFKDPQKLDNV-VKLVIEQA  1025
             +R +V+RLL++ G+  P  L+++ V  V+EQA
Sbjct  1003  MRVAVRRLLKKYGY--PPDLQKMAVEQVVEQA  1032

143) Tmath_1861 in NC_014209


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  748 bits (2831),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 462/1052 (44%), Positives = 737/1052 (71%), Gaps = 60/1052 (5%)

Query  8     ESVVEQAAIKWFKDIGYEYLHGNEIPVE----DRKDYREVILKNRLYKALIRLNPELPLE  63
             E  +EQ  + W+  ++Y+Y  GNEI++     +RK  ++V+L +RL KAL ++N+++   
Sbjct  7     EDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHPR  66

Query  64    CIEEAVRQLKNLQYPRIELNNREIHKVYRNGAKVTRRNSEGEEVGEIVKIFDYENIENNE  123
              IE A+++L   + P +  NN  +H    NG  +   + EG+ + EIVKI D+E+ +NN+
Sbjct  67    FIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNND  126

Query  124   FLVCNQVKI-KGAGLRIPDIVVYINGLPVGLFELKNPLDEAATIEGAYRQLELYKRDIPD  182
             FL  NQ  + +G   + PDIV++INGLP+ ++ELKN+ +E+  +E++Y+QLE YK  IP+
Sbjct  127   FLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQ  186

Query  183   IFAYNEICVVSDGNKAKAGTITTPWERFSAWKSIDG-VSSVEGMPELEVLIKGMFDKRRV  241
             +F++NE+ V SDG ++KAG++T+  +RF +W+S DG   S  +++ L+VLI+GM++ + +
Sbjct  187   LFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPKTL  246

Query  242   LDIIRNFITF-STAKDEVIKIMAMYHQYYGVNKAVEETIRATSPGGDRRIGTFWHTQGSG  300
             LD+IR F+ F   +K+++ KI+A YHQYY+VNKAV+ ++ A+S  GD + G +WHTQGSG
Sbjct  247   LDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQGSG  306

Query  301   KSLSMVFYTGKIIELKELQNPTIVVITDRNDLDDQLYETFCNASD------LIPYPKQAE  354
             KSL+MVF++GK+I++  L+NPT+V++TDRNDLD+QLY TF ++ +      L   PKQAE
Sbjct  307   KSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAE  364

Query  355   SVGDLKEKLSQIAAGGIFFTTIQKFQAEAEEVSEVVDPklkkalkkgkTYPLLSDRSNII  414
             +  +LK  LS + +GGI FTT+QKF++E +E   ++ +              L++R N+I
Sbjct  365   TRKELKSLLS-VESGGIVFTTMQKFEPEQNET--IMAA--------------LTERKNVI  407

Query  415   VIVDEAHRSHYEFID-----------GFAKYIRQALPNASFIGFTGTPIDLEDRSTLQVF  463
             V+ DEAHR++Y F             G+AKY+R+ALPNA+F+GFTGTP+   D++T  VF
Sbjct  408   VMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVF  467

Query  464   GNYISIYDMKQAVEDKAIVPIYYEGRLVKLHLINE-NIDRDFeevtegeeeevKNKLKTK  522
             GNYI +YDM QAV D + V IYYE+R++ L+L +  ++D  ++++TE++EE+VK++LK+K
Sbjct  468   GNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQRLKSK  527

Query  523   WAALEALVGTKERLETIARDIVEHFEERCKVLEGKGMIVCMSRRICVDLYNEIIKLRPHW  582
             W+ +EAL G+K R+E++A+DI++HFE R + + GKGMIV MSRRI VDLY+EII+L+P+W
Sbjct  528   WSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEW  587

Query  583   HSDDLDKGVIKIVMSGNASKDPKEFLTHLYTKSQIKEIEKRMKDPNDPLKLVIVRDMWLT  642
             HSDD DKGVIK+VM+G++S DP  F  H+  K +   +EKRMKD ND L+LVIVRDMWLT
Sbjct  588   HSDDDDKGVIKVVMTGSSS-DPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLT  646

Query  643   GFDVPCLHTMYIDKPMRGHNLMQAIARVNRVFKDKPAGLVVDYIGIADDLKLALANYTRS  702
             GFDVP +HTMYIDKPM+GHNLMQAIARVNRVFKDKP+GL+VDY+GIA+ LK AL +YT  
Sbjct  647   GFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYT-E  705

Query  703   TGKEAATLPIDEAIRIMQEKYDIVCSYFHGIDFSGWEEKSAEDKLSLLKQAMD-LINKDE  761
             +++  +++  D A+ +M  KYD++   +  +D+S  +     ++   + ++MD +I  +E
Sbjct  706   SDQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGE  765

Query  762   TTKKNFLDQCMALCKAFALVVPREEAMRIRSDVAFFQAVRSNIVK-YTPPKG----LSIE  816
               ++ F+     L KAFAL      A  +  ++AFF+AV++ +VK   PPK      +  
Sbjct  766   DERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPA  825

Query  817   ELDSAIKQIISEGVAASDKPIDIFDAAGLKKPDLSILSEEFLNKLMGHENKNLQIEVLRK  876
             E+++ I+Q++S++V + D  ID++++ GL +PDLSILS++FL+ + G  +KN+ +E+L +
Sbjct  826   EVEAEINQLVSQSVVTED-VIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNR  884

Query  877   LLNDEIKAKIRKNHVKYASFKEMIERVLNKYHNRAITSAEVIKHLIDLAKEMQNMDKRAK  936
             LL++++K+ ++ N      F EM+   +NKY++R+I ++ VI +LI+LAK++++ ++R++
Sbjct  885   LLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGN  944

Query  937   EMNLTEEEMAFYDIVCQGEEA--ILNDEEAKEIARELVRIIKSKTEGQVDWTIKENIKAS  994
             E+ L  +E+AFYD +   E A   ++D   + IA+EL + +K +    VDW+ +++ KA 
Sbjct  945   ELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMS--VDWSKRDSAKAK  1002

Query  995   IRATVKRLLRRKGFKDPQKLDNV-VKLVIEQA  1025
             +R +V+RLL++ G+  P  L+++ V  V+EQA
Sbjct  1003  MRVAVRRLLKKYGY--PPDLQKMAVEQVVEQA  1032

144) Sbal223_4470 in NC_011668


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  747 bits (2827),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 473/1095 (44%), Positives = 754/1095 (69%), Gaps = 78/1095 (7%)

Query  3     TEDQLEQECIRWFTDQGYLYKNGYDIAPDGDSPERDDYHQVVLKQRLLNQLAIINPELPI  62
              ED+LEQ  + W+   +Y YK+G +I+  G +PER    +VVL +RL + L  IN+++  
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  63    EALNDVVNTVSSPDTPILIKNNRVFHKFVIEGVPVE-YTAVEDGESKTKHTHAQLMDFTT  121
               ++  ++ ++   +P L+ NN  FH  +I+G+ +E Y    D+E+++     +++DF  
Sbjct  66    RFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDY----DDEGQSIVEIVKIVDFEH  121

Query  122   TDNNEFLIVNQFTITGTKGNRRPDVLVFINGLPISVIELKNPADEHADIWNAFNQLQTYK  181
              +NN+FL VNQFT+      +RPD+++FINGLPI VIELKN+++E  ++ ++++QL+TYK
Sbjct  122   PQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYK  181

Query  182   DEISDLFIFNEALVVSDGWTARVGSLTANKERFLPWKTVTGEDDKPLLEFQLETMVRGFF  241
               I++LF FNE LV SDG  ++ GSLTAN +RF+ W++  GE + +     L+ ++ G +
Sbjct  182   MRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGML  241

Query  242   KPDLLLDYIRYFILFEIDNDNIIKKI-AGYHQFHAVRAAVEATVKAKQADSDLPMVAESI  300
             +P  LLD IRYF+LF+ D    I KI A+YHQ+ AV  AV+ ++                
Sbjct  242   NPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRAL----------------  285

Query  301   GKYQVQATKGLDKIKAGSGKAGVVWHTQGSGKSISMVCYASKLLQQPAMNNPTIVVVTDR  360
                       L     G GK+GV+WHTQGSGKS++MV +++KL+Q   +NNPT+V+VTDR
Sbjct  286   ----------LASSGQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQ--MLNNPTLVIVTDR  333

Query  361   NDLDGQLYNTFGMAQET-----LKQIPQQADGRDllrqlllnrqSGGIIFTTIQKFALLD  415
             NDLD QLY+TF  ++       L+Q P+QA+ R  L+ LL    SGGI+FTT+QKF   +
Sbjct  334   NDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVE-SGGIVFTTMQKFEPEQ  392

Query  416   DEIEHPILSTRANIVVVSDEAHRSQYGNKSKLVEVKDANGNVTGSKYVFGYSKYMRDALP  475
             +E   + L+ R N++V++DEAHR+QYG ++K     D +G+  G KY  GY+KY+RDALP
Sbjct  393   NETIMAALTERKNVIVMADEAHRTQYGFNAKY----DDKGE--GIKY--GYAKYLRDALP  444

Query  476   NASFIGFTGTPIAMDDKDTRGVFGEYVSVYDIQDAVDDGATVPIYYESRLAKLDINQA-E  534
             NA+F+GFTGTP+A  DK+T+ VFG+Y+ VYD+ +AV DG+TV IYYESR+  L++ Q+ +
Sbjct  445   NATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSLD  504

Query  535   IEELNDQVedeigeeeeTASREQIKSQWATLEKLVGAEPRIQQVALDLVNHFSTRSETFP  594
             ++E  +++ ++         ++++KS+W+ +E L GA PR++ +A D+++HF TR ++  
Sbjct  505   LDEAYNDITEDQE----EDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMK  560

Query  595   GKAMIVAMSREICVDLYNAIVAIKPEWHHPDPDKGAIKIVMTGSASDKEKMQPHIHDKKT  654
             GK+MIV+MSR I VDLY+ I+ +KPEWH  D DKG IK+VMTGS+SD    Q HI  KK 
Sbjct  561   GKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKR  620

Query  655   KKLFEKRYKDTQDELQLVIVRDMWLTGFDAPCCHTMYIDKPMKGHNLMQAIARVNRVFKD  714
             + ++EKR KD +DELQLVIVRDMWLTGFD P  HTMYIDKPMKGHNLMQAIARVNRVFKD
Sbjct  621   RSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKD  680

Query  715   KPGGLVVDYIGIANELKNALKTYTNSQGKGQPTVDTAEAFSVLMEKIDIVRGMFATPVDG  774
             KPGGL+VDY+GIA+ LK+ALK YT+S+ ++Q ++DT  A  +++ K D++++M+      
Sbjct  681   KPGGLIVDYVGIAESLKEALKEYTESD-QAQTAIDTDKAVELMLLKYDVIQDMLYN----  735

Query  775   AVFNYRPEFETNALR----LLPGAVNHLSGLSHRNSKGEEVRDGKRRFLDVMAAMTKAFS  830
               ++Y + F+++        ++ +++ + GL++         D ++RF+  ++ + KAF+
Sbjct  736   --LDY-SKFNSEKKSERYYTISNTMDYVIGLGE---------DERQRFIKTVTELGKAFA  783

Query  831   LCNTMDETQGYKNEIAFYSAIKTAFIK----HSTVDKKRSDEERNTALKQILDNAIIADG  886
             LC T   +Q  ++EIAF+ A+K++++K          +++  E ++ ++Q++ +++++++
Sbjct  784   LCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTED  843

Query  887   VDDIFNMVGLDKPNIGLLSEEFLEDVKNMKEKNLAVELLEKLLRDEVKARMKNDVVQEKK  946
             V D+++ +GL++P++++LS++FL DV  +K+KN+AVELL++LL+++VK+ MK +    K+
Sbjct  844   VIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKR  903

Query  947   YSERIMTTLQKYHNRSIETAQVIEELIKWakemaadaemaeGLNLSPDEIAFYRALVMNE  1006
             +SE +  +++KY++RSIET++VIEELI+ AK++  + + ++ L L++DEIAFY ALV +E
Sbjct  904   FSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHE  963

Query  1007  ASVRELGDDSLRGLAIELTQQLRKSATVDWQKRDSVrarmrnlvrrllrrWKYPPDAAEA  1066
             ++ + + D  LR++A ELT+ ++ + +VDW KRDS +A+MR  VRRLL++  YPPD    
Sbjct  964   TAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKM  1023

Query  1067  AIKLVLEQAEVLADD  1081
             A+  V+EQAE++A +
Sbjct  1024  AVEQVVEQAELMASN  1038

145) hsdR in NC_004757


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  742 bits (2807),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 453/1062 (43%), Positives = 735/1062 (70%), Gaps = 45/1062 (4%)

Query  2     ITEQKLEDTAVGWFAELGWPHANGPEIAPDGDQPARTDYRQVVLREHLLAALARINPHIP  61
             + E+ LE+  + W+  L+    +G EI+  G  P R   ++VVL+E+L  AL +IN++I 
Sbjct  5     FNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIH  64

Query  62    aaaleqaahellTVGEPLLIARNRRVHRLLLSGIPVE-FSVGDEKRSDLVNLIDFANPRN  120
             +  +E+A HEL     P L+  N   H  L++GI +E +   ++   ++V+++DF +P+N
Sbjct  65    PRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQN  124

Query  121   NDFLLVSQFTVRATRQPRRPDLVAFVNGLPLVVIELKNPANEQTDIWDALNQIQTYKEEI  180
             NDFL V+QFTV      +RPD+V F+NGLP+VVIELKN++NE  ++ D+ +Q++TYK  I
Sbjct  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  181   GDLFNTNVAVVVSDGFTARLGSLTANQERMQPWRAIANEDDRPLLEFELETLVRGFFEPA  240
              +LF  N  +V SDG+ ++ GSLTAN +R   WR+   E + +     L+ L+ G ++P 
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPK  244

Query  241   LFLDYVRHFVLFEQDA-DQIIKKIAGYHQFHAVREAVKATVIAASNPNKGLLEVQEPRAT  299
              +LD +R FVLF++D+ ++I K +A+YHQ+ AV  AV  +++A+S    G          
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDG----------  294

Query  300   YGKEVQPGSRKAGVVWHTQGSGKSITMACYAGKLLQQPEMKNPTLVVVTDRNDLDGQLFA  359
                       K+GV+WHTQGSGKS+TM  ++GKL+Q   ++NPTLV+VTDRNDLD QL++
Sbjct  295   ----------KGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYS  342

Query  360   TFC-----AAEDLLRQTPVQAGSREELREILASREAGGIIFTTVQKFALLDDEEQHPLLS  414
             TF      ++ +LLRQTP QA +R EL+ +L+  E+GGI+FTT+QKF   ++E   + L+
Sbjct  343   TFVKSKGRSGKGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALT  401

Query  415   DRSNIVVISDEAHRSQYGMKGRLDTKTGKYVFGYAKHMRDALANATFIGFTGTPIALEDK  474
             +R N++V++DEAHR+QYG +++ D K     +GYAK +RDAL+NATF+GFTGTP+A  DK
Sbjct  402   ERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDK  461

Query  475   DTRAVFGDYVSIYDIQDAVDDGATVPIFYESRLAKLDVNQA-EIDALNAQvdeviedeed  533
             +T+ VFG+Y+ +YD+ +AV DG+TV I+YESR+  L++ Q+ ++D    +  + I ++++
Sbjct  462   NTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSLDLD----EAYNDITEDQE  517

Query  534   iTAREKTKSDWAALTKLVGAQPRLEQVAADLVQHFETRTATLEGKVMIVCMSRDICAELY  593
                +++ KS W+ +  L GA+PR+E +A D++QHFETR  ++ GK MIV MSR I  +LY
Sbjct  518   EDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLY  577

Query  594   NATVALRPDWHDADPEKGAIKVVMTGSAADKPLLQPHLYSQQVKKLLEKRFKDPADPLKL  653
             +  + L+P+WH  D +KG IKVVMTGS++D   +Q H+ +++ + +LEKR KD  D L+L
Sbjct  578   DEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQL  637

Query  654   VIVRDMWLTGFDAPCCHTMYVDKPMKGHNLMQAIARVNRVFRNKPGGLVVDYIGIANELK  713
             VIVRDMWLTGFD P  HTMY+DKPMKGHNLMQAIARVNRVF++KPGGL+VDY+GIA+ LK
Sbjct  638   VIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLK  697

Query  714   AALKTYTESKGKGDPTHNaaealavlleklDIVRGLMHGFDYRGFETDAMK----LLVPV  769
              ALK YTES ++++ + ++  A+ ++L K D++++++  +DY  F+++        +   
Sbjct  698   EALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNT  756

Query  770   ANHILGL-KDGKQRFLDAMLAVSKAFSLCSTLDETAALRTEi----affaavkaaivkft  824
              + ++GL  D +QRF+ ++  ++KAF+LC+T   +  L  EI    A  A++   +    
Sbjct  757   MDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPK  816

Query  825   tvDRKRSDADKNSALKQILDNAIVADGVADIFALAGLDKPNIGLLSEEFLEDVRQMKNRN  884
                 +++ A+ ++ ++Q++ +++V+++V D++   GL++P++++LS++FL DV  +K++N
Sbjct  817   EGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKN  876

Query  885   LAVELLEKLLSDEIKARARNNVVQEKKYGDRLLETLRKYHNRAVETAQIIEELIQMAKDF  944
             +AVELL++LL +++K+  + N    K++++ L +++ KY++R++ET+++IEELIQ+AKD+
Sbjct  877   VAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDI  936

Query  945   QAALEREAALGLNPDEIAFYDALANNESAVRELGDDTLKKIAVEITEKLRNSTTVDWQVR  1004
             +   +R   LGLN+DEIAFYDAL ++E+A + + D  L+ IA E+T  ++++ +VDW  R
Sbjct  937   KQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKR  996

Query  1005  ESVRAKLRILVRRTLQKWKYPPDKQLEAVELVLQQAEVLSNS  1046
             +S +AK+R+ VRR L+K  YPPD Q  AVE V++QAE+++++
Sbjct  997   DSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

146) alr4604 in NC_003272


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  735 bits (2779),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 449/958 (47%), Positives = 699/958 (73%), Gaps = 41/958 (4%)

Query  21   GYSYSNGYDIQPEGIKQERESFGEVILKHRLPQAISRINPTIPHDAQYQAQREIFNIA--  78
            +Y Y +G +I   G+  ER S  +V+L +RL +A+ +IN+ I  ++++  ++ I +++  
Sbjct  22   SYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDI--HPRF-IEKAIHELTLE  78

Query  79   -SSDLLNNNEIFHKYLTEGITVE-YQKNGETRGEPVKLIDWEHPENNEFLAVNQFTVIED  136
             S++LL+NN  FH  L +GI +E Y+ +G++  E VK++D EHP+NN+FLAVNQFTV+++
Sbjct  79   KSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNNDFLAVNQFTVVNG  138

Query  137  NHNHRPDIVLFINGLPLVVIElknaankkanlnaaynqlqTYKRRIPSLFTYNALLVISD  196
            +   RPDIVLFINGLP+VVIELKN++N    ++ +Y+QL+TYK RIP LFT+N +LV SD
Sbjct  139  DYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTSD  198

Query  197  GLSARAGSLTAGFNRFSTWKNPTGENQ----INELEILTNGLLNKQTLLDLIRHFTVFEK  252
            G++++AGSLTA ++RF TW++  GE +    +  L++L NG+LN +TLLDLIR F +F+ 
Sbjct  199  GINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPKTLLDLIRYFVLFQ-  257

Query  253  SKTEDLKTGIVSITTIKKIAAYHQYYAVNKAVESIINASSQEGARKGGVLWHTQGSGKSL  312
               +D K  I  I     +AAYHQYYAVNKAV+  + ASS +G  KGGV+WHTQGSGKSL
Sbjct  258  ---DDGKGHISKI-----LAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQGSGKSL  309

Query  313  SMVFLAGKLVLNENLQNPTIVMLTDRNDLDDQLFDTFAGCQQ-----LLRQDPQQAGDRE  367
            +MVF++GKL+  + L+NPT+V++TDRNDLD+QL+ TF   +      LLRQ P+QA  R 
Sbjct  310  TMVFFSGKLI--QMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRK  367

Query  368  QVRQLLNTNSGGIIFTTVQKFSPADGETLYPQISPRPNIIVLADEAHRSQYGFTAKQVNV  427
            +++ LL+ +SGGI+FTT+QKF P + ET+ + ++ R N+IV+ADEAHR+QYGF AK    
Sbjct  368  ELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFNAK----  423

Query  428  LDAEGNVIGKRTKYGFAKYIRQALPNATFVGFTGTPVEQTDKNTPAIFGEYIDIYDISQA  487
             D  G+ I    KYG+AKY+R+ALPNATFVGFTGTPV  TDKNT  +FG+YID+YD++QA
Sbjct  424  YDDKGEGI----KYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQA  479

Query  488  VKDGATVPIYYESRLVQVDLDAAGRQlldeldedlsfedlsttqkakakqtkLEAIVGST  547
            V DG+TV IYYESR++ ++L + + +L +  ++    ++    Q+ K+K +++EA+ G+ 
Sbjct  480  VADGSTVKIYYESRVIPLNL-PQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAK  538

Query  548  KRIRQIAQDIVTHFEARQQVNKGKAMIVTMSRQIAVNLYDAIIQLRPDWHSEDLNLGKIK  607
             R+  +A+DI+ HFE+RQQ  KGK+MIVTMSR+IAV+LYD II+L+P+WHS+D + G IK
Sbjct  539  PRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIK  598

Query  608  VVITTSAADEGNLVKHHTSKAQRQNLAQRLKDPENSLELAIVCDMWLTGFDAPCLHTMYI  667
            VV+T S++D  ++ +H  +K +R  L +R+KD ++ L+L IV DMWLTGFD P +HTMYI
Sbjct  599  VVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYI  658

Query  668  DKPLKSHNLMQAIARINRVYFEKTGGLIVDYLGLATELKKALSFYSQSGGKGDLTLNQEV  727
            DKP+K+HNLMQAIAR+NRV+ +K GGLIVDY+G+A  LK AL  Y++S ++++ +++ + 
Sbjct  659  DKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDK  717

Query  728  AVGLLLAKLEIVEQIISGFTYQHYFEADTGEKLNILKNATNYVA--APNIKDRFLSEVIA  785
            AV L+L K +++++++  + Y  +     +E+   + N+ +YV   + + ++RF+  V  
Sbjct  718  AVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTE  777

Query  786  LSKAHSLAVPHPQAIAASETISFFQAIQASLRKLEGSGDSGGL--SNQDIETAIRQVVDQ  843
            L+KA +L   +P A   ++ I+FF+A++A+L KL  +   G    +  ++E+ I Q+V Q
Sbjct  778  LGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQ  837

Query  844  ALVSDAVINIFDEAGIKNPDISIISDEFMAEVRGMEHQNLAVELLQKLLKDEVKTRSRTN  903
            ++V++ VI++++  G+ +PD+SI+SD+F+ +V G+ ++N+AVELL++LLK++VK+  +TN
Sbjct  838  SVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTN  897

Query  904  IVQSRKLSEMLEDALRRYRNQVISVTDILEELLELAKDTKAANARGEELGLEPYELAF  961
               S+++SEML +++ +Y ++ I  + ++EEL++LAKD K  + RG+ELGL++ E+AF
Sbjct  898  ATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAF  955

147) hsdR in NC_002663


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  735 bits (2780),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 462/1061 (44%), Positives = 739/1061 (70%), Gaps = 47/1061 (4%)

Query  3     DESTLEQAALDWFRETGWQTFNGKELFTEGRNPQRHQLSAVILEPIFRTQFALLNPHLPV  62
             +E  LEQ  L+W+   + +  +G+E+   G  P+R     V+L+  +   +  +N+++  
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  63    DCVEQVLAKLKQAESRDLVEANQAFHRLLTQGVPV-TYKKGDDICFETAFLLDYAEPERN  121
               +E+ +  L    S +L+E N +FH  L +G+ +  Y   ++   E   ++D+ +P+ N
Sbjct  66    RFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNN  125

Query  122   AFWAVNQFEV-RGLHLRRPDIVCFINGLPIAILELKNPADEKNDVWNAFHQLQTYKNDLF  180
              F AVNQF V  G   +RPDIV FINGLPI ++ELKN+++E  +V +++HQL+TYK  + 
Sbjct  126   DFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  181   DLLMFNGALAISDGVIAKVGSLTADEERFMPWRTVKNENDKPMVEWQLEILIRGFFRPDL  240
             +L+ FN  L  SDG+ +K GSLTA+ +RFM WR+   E + +     L++LI G + P  
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPKT  245

Query  241   FTDYLHFFILFERNEKNRLIKKQASYHQFHAVREAVRATVIASRPLSDKVVREPRANYGR  300
             + D +++F+LF+ + K ++ K  A+YHQ+ AV  AV  +++AS                 
Sbjct  246   LLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSG---------------  290

Query  301   EVQVGSKKAGVVWHTQGSGKSISMCCYAGKLLQQPEMGNPTLLVVTDRNDLDGQLFQQF-  359
                 G  K+GV+WHTQGSGKS++M  ++GKL+Q   + NPTL++VTDRNDLD QL+  F 
Sbjct  291   ---QGDGKGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFV  345

Query  360   ----SLAKDLLKQDPVRAESREQLRELLASRDVGGVIFTTVQKFALQEDEQAHPLLNGRH  415
                   +K+LL+Q P +AE+R +L+ LL+  + GG++FTT+QKF  +++E   + L  R 
Sbjct  346   KSKGRSGKGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERK  404

Query  416   NIVVISDEAHRSQYGLKAKLNAKG-SFQFGYAKHMRDALKNATFIGFTGTPIETEDKDTR  474
             N++V++DEAHR+QYG++AK + KG ++++GYAK +RDAL NATF+GFTGTP+ + DK+T+
Sbjct  405   NVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQ  464

Query  475   AVFGDYVSIYDIQDAVDDGATVPIYYESRLARLDINRAEIEELAQQFDeiveeeeqteae  534
              VFG+Y+ +YD+ +AV DG+TV IYYESR+  L++ ++   +L + +++I E++E+   +
Sbjct  465   MVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSL--DLDEAYNDITEDQEEDVKQ  522

Query  535   RIKGEFTRLEKLVGAQPRLQQIAKDLIQHFEKRQESQDGKAMIVAMSRDTCVHLYNEIIA  594
             R+K+  +R+E L GA+PR++ +AKD+IQHFE RQ++  GK+MIV+MSR   V+LY+EII 
Sbjct  523   RLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIR  582

Query  595   LKPEWHNDDPSKGAIKIVMTGSAADKALLQPHIYSKQVKQDLEKRFKNPDDPLKLVIVRD  654
             LKPEWH+DD  KG IK+VMTGS++D + +Q HI +K+ +  LEKR K+ +D L+LVIVRD
Sbjct  583   LKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRD  642

Query  655   MWLTGFDAPCCHTMYVDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALHT  714
             MWLTGFD P  HTMY+DKPM+GHNLMQAIARVNRVFKDKPGGL+VDY+GIA+ LK+AL  
Sbjct  643   MWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKE  702

Query  715   YTNAKGRGKPTIDTQEALKVLLEKMDAIAGMFATPLEGKVLDIGQFETQAVS----LLPK  770
             YT++ ++++ +IDT+ A+ ++L K D I +M+        LD ++F+++  S     +++
Sbjct  703   YTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYN------LDYSKFNSEKKSERYYTISN  755

Query  771   AANHILGL-EDGKKRFADLVLAATKAYALCGTLEQSKTYQRKLAFYAAVKAMMFK--EQI  827
             + + ++GL ED ++RF   V    KA+ALC+T   ++  +  +AF+ AVKA + K  +  
Sbjct  756   TMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPP  815

Query  828   GDGKLRKQRQ--DHVLKQILDNSLIADGVDDIFTLCGLEKPNIGLLSDEFLEDVRQIEHK  885
              +GK RK     +  ++Q++ +S+++++V D++   GLE+P++++LSD+FL DV  + +K
Sbjct  816   KEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQK  875

Query  886   NLAVELLEKLLQDNIKSRSARNLVQERKYRERLEATLTKYHNRGIETAQVIEELIQMAKD  945
             N+AVELL++LL++++KS    N    +++ E L  ++ KY++R+IET++VIEELIQ+AKD
Sbjct  876   NVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKD  935

Query  946   FQEAFKRAEDLGLNSDEIAFYDALANNESAVRELGDQILKAIALELVKQLRHSVTVDWQV  1005
             +++  +R+++LGLNSDEIAFYDAL ++E+A + + D+ L+AIA EL K ++++++VDW  
Sbjct  936   IKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSK  995

Query  1006  RESvrarlrilvrrilQKYKYPPDKADEAIDLVLEQAETLS  1046
             R+S +A++R+ VRR+L+KY YPPD    A++ V+EQAE ++
Sbjct  996   RDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMA  1036

148) NT08PM_1867 in NC_017764


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  731 bits (2764),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 461/1063 (44%), Positives = 737/1063 (70%), Gaps = 47/1063 (4%)

Query  3     DENTLEQAALDWFSEIGWQTFHAKELFTEGSNPQRHQLSAVILEPIFRTKFAQLNPHLPE  62
             +E+ LEQ  L+W+  ++ +   ++E+   G  P+R     V+L+  +   + ++N+++  
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  63    DCVEQVLVKLKQAESRDLVEANQAFHRLLTQGVPV-TYKKGDDICFETAFLLDYAEPKRN  121
               +E+ +  L    S +L+E N +FH  L +G+ +  Y   ++   E   ++D+ +P+ N
Sbjct  66    RFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNN  125

Query  122   AFWAVNQFEV-RGSHLRRPDIICFINGLPIAILELKNPADEKTDVWDAFHQLQTYKNDLF  180
              F AVNQF V  G   +RPDI+ FINGLPI ++ELKN+++E  +V D++HQL+TYK  + 
Sbjct  126   DFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  181   DLLMFNGALAISDGVVAKVGSLTADEERFMPWRTVNNENDKPTVEWQLDTLIRGFFRPDL  240
             +L+ FN  L  SDG+ +K GSLTA+ +RFM WR+ + E + ++    LD LI G + P  
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPKT  245

Query  241   FTDYLRFFILFERNEKNRLIKKQASYHQFHAVREAVRATVIASRPSSDKMVQEPRANYGR  300
             + D +R+F+LF+ + K ++ K  A+YHQ+ AV  AV  +++AS                 
Sbjct  246   LLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQ--------------  291

Query  301   EVQVGSKKAGVVWHTQGSGKSISMCCYAGKLLQQPEMGNPTLLVVTDRNDLDGQLFQQF-  359
                 G  K+GV+WHTQGSGKS++M  ++GKL+Q   + NPTL++VTDRNDLD QL+  F 
Sbjct  292   ----GDGKGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFV  345

Query  360   ----SLAKDLLKQDPVRAESREQLRELLASRDVGGVIFTTVQKFALQEDEQAHPLLNGRH  415
                   +K+LL+Q P +AE+R +L+ LL+  + GG++FTT+QKF  +++E   + L  R 
Sbjct  346   KSKGRSGKGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERK  404

Query  416   NIVVISDEAHRSQYGLKAKLNAKG-AFQFGYAKHMRDALQNATFIGFTGTPIETEDKDTR  474
             N++V++DEAHR+QYG++AK + KG ++++GYAK +RDAL NATF+GFTGTP+ + DK+T+
Sbjct  405   NVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQ  464

Query  475   AVFGDYVSIYDIQDAVDDGATVPIYYESRLARLDINRFEIEELAQQFDeiveeeeqteae  534
              VFG+Y+ +YD+ +AV DG+TV IYYESR+  L++   +  +L + +++I E++E+   +
Sbjct  465   MVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLP--QSLDLDEAYNDITEDQEEDVKQ  522

Query  535   RIKGEFTRLEKLVGAQPRLQQIAKDLIQHFEKRQESQDGKAMIVAMSRDICVHLYNEIIA  594
             R+K+  +R+E L GA+PR++ +AKD+IQHFE RQ++  GK+MIV+MSR I V+LY+EII 
Sbjct  523   RLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIR  582

Query  595   LKPEWHNDDPNKGAIKIVMTGSAADKALLQPHIYSKQVKQDLEKRFKNPDDPLKLVIVRD  654
             LKPEWH+DD +KG IK+VMTGS++D + +Q HI +K+ +  LEKR K+ +D L+LVIVRD
Sbjct  583   LKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRD  642

Query  655   MWLTGFDAPCCHTMYVDKPMRGHNLMQAIARVNRVFKDKPGGLVVDYIGIANELKQALHT  714
             MWLTGFD P  HTMY+DKPM+GHNLMQAIARVNRVFKDKPGGL+VDY+GIA+ LK+AL  
Sbjct  643   MWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKE  702

Query  715   YTNAKGRGKPTIDTQEALKVLLEKMDAIAGMFATPLEGKVLDIGQFETQALS----LLPK  770
             YT++ ++++ +IDT+ A+ ++L K D I +M+        LD ++F+++  S     +++
Sbjct  703   YTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYN------LDYSKFNSEKKSERYYTISN  755

Query  771   AANHILGL-EDGKKRFADLVLAATKAYALCGTLEQSKTYQRKLa--fyaaakammfkaQI  827
             + + ++GL ED ++RF   V    KA+ALC+T   ++  +  +A      A  + +    
Sbjct  756   TMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPP  815

Query  828   GDGKLRKQRQ--DHVLKQILDNSLIADGVDDIFTLCGLEKPNIGLLSDEFLEDVRQMEHK  885
              +GK RK     +  ++Q++ +S+++++V D++   GLE+P++++LSD+FL DV  + +K
Sbjct  816   KEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQK  875

Query  886   NLAVELLEKLLQDNIKSRSARNLVQERKYRERLEATLTKYHNRGIETAQVIEELIQMAKD  945
             N+AVELL++LL++++KS    N    +++ E L  ++ KY++R+IET++VIEELIQ+AKD
Sbjct  876   NVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKD  935

Query  946   FQEAFKRAEDLGLNSDEIAFYDALANNESAVRELGDKILKAIALELVKQLRSSVTVDWQV  1005
             +++  +R+++LGLNSDEIAFYDAL ++E+A + + DK L+AIA EL K ++ +++VDW  
Sbjct  936   IKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSK  995

Query  1006  RESvrarlrilvrrilQKYKYPPDKADEAIELVLEQAETLSEQ  1048
             R+S +A++R+ VRR+L+KY YPPD    A+E V+EQAE ++ +
Sbjct  996   RDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

149) hsdR in NC_017080


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  721 bits (2727),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 447/1085 (42%), Positives = 730/1085 (68%), Gaps = 71/1085 (6%)

Query  2     INEDAVEQKALRWFQDTGWAYLHGSELAPDVAPEQRADGKAVVLAGRLAEAVRRLNPQLP  61
             +NED +EQ  L W++  +  Y  G+E++    + +R  +K VVL  RL  A+R++N+++ 
Sbjct  5     FNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIH  64

Query  62    aeaveevvraaTQREHPDLARANAAFHRRMIDGVPVR-FEDPSTGEKVQDVARLVDFGGA  120
             +  +E  ++  T    P+L   N +FH  +I+G+ +  ++D   G+ + ++ ++VDF  +
Sbjct  65    PRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDE--GQSIVEIVKIVDFEHP  122

Query  121   ANNDWLVVNQLAIAGTKDGRRPDVIAYLNGLPIAVIELKNPADEKADVWAAYRQLQTYKD  180
              NND L VNQ+++      +RPD++ ++NGLPI VIELKN+++E  +V  +Y+QL+TYK 
Sbjct  123   QNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKM  182

Query  181   EIGELFVRNAALVVSDGITARVGSLTASPEWFLPWRAVSGEADQPKVEMELERVVRGFFR  240
              I +LF  N  LV SDGI ++ GSLTA+ ++F+ WR+  GE++ +     L+ ++ G + 
Sbjct  183   RIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLN  242

Query  241   PDLLLDYLRHFILF--EGEEDVVKKIAGYHQFHGvraaveatvvaaDRGVETAPGDAVRE  298
             P  LLD +R F+LF  +G  ++ K +A+YHQ+ +          A DR++ +++G+    
Sbjct  243   PKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYA-------VNKAVDRALLASSGQ----  291

Query  299   RPAADWGRRVPRGSGKAGVFWHTQGSGKSISMAMYAGKLMQQPAMNNPTLVVVTDRLDLD  358
                         G GK+GV+WHTQGSGKS++M  ++GKL+Q   +NNPTLV+VTDR DLD
Sbjct  292   ------------GDGKGGVIWHTQGSGKSLTMVFFSGKLIQ--MLNNPTLVIVTDRNDLD  337

Query  359   GQLFAQFA-----AAKSLLGEKPDQAESREQLRDYLDGRASGGIVFTTVQKFAPLDGEEA  413
              QL++ F      ++K+LL + P QAE+R +L+  L    SGGIVFTT+QKF P + E  
Sbjct  338   NQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETI  396

Query  414   HPVLSGRSNVVVISDEAHRSQYGIKPTLDRKTGRYVYGYAKHLRDALSGASFIGFTGTPI  473
              + L+ R NV+V++DEAHR+QYG+++  D K     YGYAK LRDAL+ A+F+GFTGTP+
Sbjct  397   MAALTERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPV  456

Query  474   SSEDRDTRGVFGEYVSVYDIADAVEDGATVQIYYESRRAKLDLNDAEIETLNQQvdevve  533
             +S D++T+ VFG+Y+ VYD+++AV DG+TV+IYYESR   L+L ++    L++  +++ E
Sbjct  457   ASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITE  514

Query  534   deetedrertKGHWAQLAKLVGARPRLEAIADDLLAHFDQRKEAMASQVGPDGGKAMIVT  593
             D+E + ++R K+ W+++  L GA+PR+EA+A D++ HF+ R++AM        GK+MIVT
Sbjct  515   DQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMK-------GKGMIVT  567

Query  594   MSRDICVALFDEIVRRRPEMAGSRKDDGTWNPED---GSIRVVMTGTATDRVELRHHQHG  650
             MSR I V L+DEI+R +PE          W+++D   G I+VVMTG+++D   +++H   
Sbjct  568   MSRRIAVDLYDEIIRLKPE----------WHSDDDDKGVIKVVMTGSSSDPTSFQRHIGP  617

Query  651   KAQRERLAKRFKDPADPLELVIVRDMWLTGFDAPCCHTMYVDKPMRGHALMQAIARVNRV  710
             K +R  L KR KD  D L+LVIVRDMWLTGFD P  HTMY+DKPM+GH LMQAIARVNRV
Sbjct  618   KKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRV  677

Query  711   FREKAGGLVVDYIGIANELKQALKTYTESKGRGQPTVRAEDGLRILKEKVGVLRDMMREN  770
             F++K+GGL+VDY+GIA+ LK+ALK YTES +++Q ++ ++ ++ ++  K +V++DM+ + 
Sbjct  678   FKDKPGGLIVDYVGIAESLKEALKEYTES-DQAQTAIDTDKAVELMLLKYDVIQDMLYN-  735

Query  771   GGFAYAGFETQPLE----LLPGVTNHLLGL-DDGKRRFLDVMASVLKAFSLCATLDEAAA  825
               + Y+ F+++        ++   + ++GL +D ++RF+  ++ + KAF+LCAT   A  
Sbjct  736   --LDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQE  793

Query  826   LRTEIAFFSAVRGVLAK----HGQEEPKRGGADKSASLKLILDNAVVSEGVDDIFAMAGL  881
             L  EIAFF AV++ L K      +   ++  A+  A ++ ++ ++VV+E+V D++   GL
Sbjct  794   LNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGL  853

Query  882   ERPDIGLLSEGFLEDVRRMPAKNLAVELLERLIRDEIRGRSRNNVVRESRYGERLAETLR  941
             E+PD+++LS++FL DV  +  KN+AVELL+RL+++++++  + N     R++E L++++ 
Sbjct  854   EQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSIN  913

Query  942   RYNNRAIESGAVVEELIAMARDFAEAVRRDEDLGLSPDEIAFYEALAERPEVLREMGDET  1001
             +YN+R+IE++ V+EELI +A+D+ +  +R+++LGL++DEIAFY+AL  +    + M D  
Sbjct  914   KYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKK  973

Query  1002  LKALAVELTAKLRASTTVDWRVRESVrarmrllikrllrkhrYPPAGQERAVDVVIAQAE  1061
             L+A+A ELT  ++ + +VDW  R+S +A+MR+ ++RLL+K  YPP  Q  AV+ V+ QAE
Sbjct  974   LRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAE  1033

Query  1062  RLSEG  1066
              ++  
Sbjct  1034  LMASN  1038

150) hsdR3 in NC_009053


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  717 bits (2713),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 436/1066 (41%), Positives = 712/1066 (67%), Gaps = 56/1066 (5%)

Query  2     HINENTIEQACIQALQGLGWAYTFGSEI-------ERERAEEVVLKSVLANAITRLNPQL  54
             ++NE+ +EQ  ++ L++L+  Y  G+EI       ER    +VVL   L +A+ ++N+++
Sbjct  4     QFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDI  63

Query  55    PSNVVNDVVALVCKGDITDLTERNQQFYRLLREGVRVE-YRENDEQKIDIVRLIDFQNVH  113
              +  ++  +  +      +L E N  F   L +G+ +E Y ++++  ++IV+++DF++ +
Sbjct  64    HPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQ  123

Query  114   NNQFDVVNKFTIKGLKGNRRPDVICFVNGLPLVVFELKNPLTESADLQQAFQQFQTYKAE  173
             NN+F  VN+FT+      +RPD++ F+NGLP+VV+ELKN+  E+ +++++++Q++TYK  
Sbjct  124   NNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  174   ISDLFVFNQALVISDGTHARIGSLTANFDRFTPWRVVDEKAKQRVSFENELAGLVQGLMS  233
             I++LF FN+ LV SDG +++ GSLTAN+DRF  WR  D  +    S+ + L  L++G+++
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLAS-LDVLINGMLN  242

Query  234   PENLLNYVQNFVLFERSESGQLIKKIAAYHQFYGVNEAVESTLLAASEQGDRKIGVMWHT  293
             P  LL+ ++ FVLF+    G++ K +AAYHQ+Y+VN AV+ +LLA+S QGD K GV+WHT
Sbjct  243   PKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHT  302

Query  294   QGSGKSISMLFYAAKLQAEPSLRNPTIVVVTDRNDLDGQLFATF-----SAGKDLIRQTP  348
             QGSGKS++M+F+++KL     L NPT+V+VTDRNDLD QL++TF      +GK+L+RQTP
Sbjct  303   QGSGKSLTMVFFSGKLI--QMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  349   IQADGREALRVELAKRETGGIIFTTIQKFGLQEGENEHPILNDRQNIIVISDEAHRSQYG  408
              QA+ R  L+  L   E+GGI+FTT+QKF  ++ E   + L +R+N+IV++DEAHR+QYG
Sbjct  361   KQAETRKELK-SLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYG  419

Query  409   FTQHLSMGSQSAAYRVGYAKHLRNALPNASFIGFTGTPISLEDKDTQAVFGRYVSIYDIQ  468
             F       +++  Y  GYAK LR+ALPNA+F+GFTGTP++  DK+TQ VFG Y+ +YD+ 
Sbjct  420   FNAKYDDKGEGIKY--GYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMT  477

Query  469   DAVEDGATVPIVYEARQIPINESQDFQTAVQEADDLFSDDEQSYSFRLREK------LMG  522
             +AV DG+TV I YE+R IP+N +Q ++   +  +D+  D+E+    RL+ K      L G
Sbjct  478   QAVADGSTVKIYYESRVIPLNLPQSLDLD-EAYNDITEDQEEDVKQRLKSKWSRIEALAG  536

Query  523   ADTRLTKLAEDLVKHFENRTALMDGKAMIVAMSRQICVALYDKIIALRPEWHSDNLNEGA  582
             A  R+  LA D+++HFE R   M GK+MIV+MSR+I V LYD II L+PEWHSD+ + G 
Sbjct  537   AKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGV  596

Query  583   IKIVMTGSASDPDHFQPHIYGNQEKKTLEKRFKDPNDPLKLVIVRDMWLTGFDAPCCNTM  642
             IK+VMTGS+SDP  FQ HI  ++ +  LEKR KD ND L+LVIVRDMWLTGFD P  +TM
Sbjct  597   IKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTM  656

Query  643   YIDKPMKGHNLMQAIARVNRVFRNKSRENGGLIVDYVGLVDELKSATAEYTNANGKGEMV  702
             YIDKPMKGHNLMQAIARVNRVF++K+   GGLIVDYVG+ + LK A  EYT+++     +
Sbjct  657   YIDKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTESDQAQTAI  713

Query  703   NDIEKIKLKFLECLDIVRGMFASPVSGQIFPL-FDVLKIHDEMALFEQILTAANHILSLD  761
             +    + L +L   D++++M        ++ L +  ++ +     +  I  + + +++L+
Sbjct  714   DTDKAVELMLLKY-DVIQDM--------LYNLDYSKFNSEKKSERYYTISNTMDYVIGLG  764

Query  762   QQNPVDDKAKDKTPRKNRFLQAMRLAKKGYGLCGSLPEVQAYQRELAFIDAVRAMLAK--  819
             +++            ++RF++++    K+++LC++ P  Q  + E+AF+ AV+A L K  
Sbjct  765   EDE------------RQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLL  812

Query  820   ---REPNSTANPADRQLKLVALLNQAVKADGAVDLFALLNRDQPNIEILSEQFLEQVKNS  876
                +E ++   PA+ +  +  L++Q+V +++ +D++  L  +QP++ ILS++FL +V   
Sbjct  813   QPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGL  872

Query  877   RHKALWLEAIQRYLQAEFKEKGVSNLSVQKDFETRLKEAMNKYRNQNltlleildellAM  936
             ++K + +E ++R L+++ K    +N +V K F   L +++NKY ++++    +++EL+ +
Sbjct  873   KQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQL  932

Query  937   GKEFAERLARGEKLGLTPAEIAFYDALAQNESAVRELGDDVLKNLAMTITEKIRQSATID  996
             +K++ +   RG+ LGL + EIAFYDAL  +E+A + + D  L+ +A  +T  ++++ ++D
Sbjct  933   AKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVD  992

Query  997   WQFKDSVRAKMRIEIRRALRLFKYPPDKQAEAVEFVLKQAEVIADE  1042
             W  +DS +AKMR+ +RR L+ + YPPD Q  AVE V+ QAE++A +
Sbjct  993   WSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

151) GLX_22380 in NC_016027


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  714 bits (2699),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 444/1044 (43%), Positives = 713/1044 (69%), Gaps = 27/1044 (2%)

Query  17    EEAVELAALSWFDLVGWRTLPGDHLAPDGPIGARRDYRQCVLEPELRSALATLNPDATAA  76
             E+ +E   L W++ ++     G++++  G    R+  ++ VL+  L  AL  +N+D  + 
Sbjct  7     EDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHPR  66

Query  77    MVDTAVQAVLSVPSQELKENNRAFHTMLASGVPVEIVENGETRTVGL-RLFDRQNLSANR  135
              ++ A++ +    S +L ENN +FH  L +G+ +E  ++     V + ++ D ++   N 
Sbjct  67    FIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNND  126

Query  136   WLVANQFVVQGEREIIRPDVTAFVNGLPLAVLELKSPVHEHATLESAWHQLQNYKAKAPE  195
              L  NQF V       RPD+  F+NGLP+ V+ELK++ +E   +E + HQL+ YK + P+
Sbjct  127   FLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIPQ  186

Query  196   LLRTNQVLVISDGLDARIGSLTAGLDRFGPWRTIEGDTLDDGSRPELEVLIRGVFAPERF  255
             L+  N+VLV SDG++++ GSLTA  DRF  WR+ +G+T   +S + L+VLI G++ P  +
Sbjct  187   LFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPKTL  246

Query  256   LDFIVDFVAFEVVDGVVKSKKLAGYHQFHAVRKALVSTEHAAAEgggrrggVIWHTQGSG  315
             LD+I  FV F+  +    SK LA+YHQ+ AV KA+  +  A++  G+ +GGVIWHTQGSG
Sbjct  247   LDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQGSG  306

Query  316   KSLTMLFFVRQLQLAKPLRNPTVVIVTDRNDLDDQLFGIFNHHISA-----LRGTPRQAN  370
             KSLTM+FF  +L   + L NPT+VIVTDRNDLD+QL++ F    +      LR TP+QA+
Sbjct  307   KSLTMVFFSGKL--IQMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAE  364

Query  371   SAAEMRQLLAVDIGGLVFTGIQKFRGDEDGHPL--LTDRRNVIVIADEAHRSQYGLRKRF  428
             +  E++ LL+V+ GG+VFT +QKF  +++   +  LT+R+NVIV+ADEAHR+QYG+  ++
Sbjct  365   TRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFNAKY  424

Query  429   VVDRNGVRETVGFAEYLRQALPNATFVGFTGTPIEEKDRNTQAVFGDVIDTYDMTQAVTD  488
                 +G++   G+A YLR+ALPNATFVGFTGTP+   D+NTQ VFG+ ID YDMTQAV+D
Sbjct  425   DDKGEGIK--YGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVAD  482

Query  489   KATVPIHYTARLAKlrlelsenereeldalaeelsegdeaaVEHEKGKLGRFEEVVGAPD  548
              +TV I Y +R+  L L  S +  E  + ++E+  E+    +   K+K +R+E + GA  
Sbjct  483   GSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQRL---KSKWSRIEALAGAKP  539

Query  549   RIHEVARDIVAHFEARREALGGGKGMIVTISRRVAVELYNRIAVLRPDWVSADPRDDATG  608
             R++ +A+DI+ HFE+R++A+ G KGMIVT+SRR+AV+LY+ I  L+P+W   ++ DD  G
Sbjct  540   RVEALAKDIIQHFETRQQAMKG-KGMIVTMSRRIAVDLYDEIIRLKPEW---HSDDDDKG  595

Query  609   MLKVVITGKGNTDPELLQPHLRSKRQREELAERFKNPTSGFDLVIVRDMWLTGFDAPSLH  668
             ++KVV+TG +++DP  +Q H+ +K++R  L  R K+    ++LVIVRDMWLTGFD PS+H
Sbjct  596   VIKVVMTG-SSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMH  654

Query  669   TLYIDKPMRGHGLMQAIARVNRVWGDKPGGLVVDYLGVGTELREALAQYTERDRDQVRPD  728
             T+YIDKPM+GH LMQAIARVNRV  DKPGGL+VDY+G++  L+EAL +YTE D+ Q   D
Sbjct  655   TMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAID  714

Query  729   LDEAVRQTLLRLESAETLLEGVAWRRFFNASPGERLTVLKQCLEHL--LSTQQRDRFVET  786
              D AV   LL+ +  + +L  +   +F +   +ER   + + ++ +  L+ ++R+RF+ T
Sbjct  715   TDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKT  774

Query  787   SLEMEIAYAISAGDERVAVRRDEIAIMAAIRTNLVKY---TKGGV--RSRFDIERDIRQL  841
               E+  A+A+ A +       DEIA+  A+++ LVK     K G   ++  ++E +I QL
Sbjct  775   VTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQL  834

Query  842   LSRAVMSDGILDVFQSAGLERPDLSILSDEFLAEARSSRQPSLAVETLRRLLEGEIKART  901
             +S++V++++++DV+Q+ GLE+PDLSILSD+FL +  + +Q ++AVE L RLL G++K+  
Sbjct  835   VSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLM  894

Query  902   SSNLVEARKLTDRLDETLRRYHNRAVDSLQVIEELIALAKELSAAKSRGeelalseeela  961
              +N   ++++++ L++++ +Y++R++++ +VIEELI LAK++   + RG+EL+L+ +E+A
Sbjct  895   KTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIA  954

Query  962   FYDALAENGSARDLMAHDALRTLAQILTATIRSSVSIDWTRKESVRAKMRIEVRKLLARY  1021
             FYDAL  + +A+  M +  LR++A+ LT T++ ++S+DW++++S +AKMR+ VR+LL +Y
Sbjct  955   FYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKY  1014

Query  1022  GYPPDLQRAAVDLVIKQAELIAGS  1045
             GYPPDLQ+ AV+ V+ QAEL+A++
Sbjct  1015  GYPPDLQKMAVEQVVEQAELMASN  1038

152) Mzhil_1435 in NC_015676


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  712 bits (2692),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 478/1044 (46%), Positives = 739/1044 (71%), Gaps = 40/1044 (3%)

Query  17    LHLLDELGYECIYGPEISPGGNLVERMDYSDVILRNRLQDAIEKINPSIPEKAREEAIEK  76
             L+ L+ L+Y+   G EIS  G   ER    DV+L++RL+ A+ KIN+ I  +  E AI+ 
Sbjct  15    LEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHPRFIEKAIHE  74

Query  77    LLQPSAQDLVFNNHEFHNHIKNGIDVA-YESGNETYYDKVYPVDFNCLTNNDFLAVNQFT  135
             L    + +L+ NN  FH+++ NGI++  Y+   ++  + V  VDF+   NNDFLAVNQFT
Sbjct  75    LTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNNDFLAVNQFT  134

Query  136   VLDGEHKRRPDLILFVNGLPLVVMELKRPDNYTDDSDLIDEAYDQLQTYKKEIPNLLRFN  195
             V++G+  +RPD++LF+NGLP+VV+ELK +   T+++  ++++Y+QL+TYK  IP+L+ FN
Sbjct  135   VVNGDYTKRPDIVLFINGLPIVVIELKNS---TNETVGVEDGYHQLETYKMRIPQLFTFN  191

Query  196   EILVISDGQDAKAGTLTSNSNFFAPW--KHENDNKFSTEPEITTLINNMCLPEVLIDIVQ  253
             E+LV SDG ++KAG+LT+N + F  W  K+ + +  S+ + +  LIN M  P  L+D+++
Sbjct  192   EVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPKTLLDLIR  251

Query  254   NFILFEDD-NGVLLKKIARYHQYYAVNKAVHSTKVAVSPEGDKRCGVVWHTTGAGKSMEM  312
              F+LF+DD +G + K +A YHQYYAVNKAV+ + +A S +GD + GV+WHT G+GKS+ M
Sbjct  252   YFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQGSGKSLTM  311

Query  313   VFYTQKISRDTTLENPTVVVITDRNDLDDQLYDTFSRCIT-----YLGQTPIQAETSKDL  367
             VF++ K+ +   L+NPT+V++TDRNDLD+QLY TF +         L QTP QAET K+L
Sbjct  312   VFFSGKLIQ--MLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKEL  369

Query  368   MDKLTRKSGGIVFTTLQKFSPDEDKYPL--LSERKNIIVLADEAHRSQYGLGAKINRNTG  425
                L+  SGGIVFTT+QKF P+++   +  L+ERKN+IV+ADEAHR+QYG+ AK + +  
Sbjct  370   KSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFNAKYDDKGE  429

Query  426   EKSYGFAKYLRDALPNASFIGFTGTPIELSDKSTKAIFGDYIDIYDIEQSLHDQVTVPIS  485
                YG+AKYLRDALPNA+F+GFTGTP+  +DK+T+ +FG+YID+YD+ Q++ D  TV I 
Sbjct  430   GIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIY  489

Query  486   YESRLANLKLLTNDLEKLDAGFNEITDGEESERIEKLKSKESSVEAILTTPENMDKIAND  545
             YESR+  L+L  + L+ LD ++N+IT+++E +  ++LKSK S +EA+  +   ++ +A+D
Sbjct  490   YESRVIPLNL-PQSLD-LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKD  547

Query  546   IINHFESRSKAMDGKAMIVTMSRHMAAQLYESIIKYRPDWHDEDDAKGQIKVIITGKASE  605
             II+HFE+R +AM GK+MIVTMSR++A +LY+ II+ +P+WH +DD KG IKV++TG +S+
Sbjct  548   IIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSD  607

Query  606   -TELIDHIRPkqkqkqiqqRMKDPEDELKIVIVCDMWLTGFDVPCLTTMYFLKYLKGHNI  664
              T +  HI PK+++  +++RMKD +DEL++VIV DMWLTGFDVP + TMY+ K +KGHN+
Sbjct  608   PTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNL  667

Query  665   IQAISRVNRVYLDKPGGLVVDYVGILYDLKHALKQYTESGGKGLLAEDQQVAVDYMQEKY  724
             +QAI+RVNRV+ DKPGGL+VDYVGI   LK+ALK+YTES+ ++  A D + AV+ M  KY
Sbjct  668   MQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESD-QAQTAIDTDKAVELMLLKY  726

Query  725   EQINGMLHGFDYSRVFKVPAGEKLEIVREGADFILQKDILINQEVDQKIRPKGDKDYTRK  784
             + I++ML  +DYS+      +E+   + +  D+++    L ++E              R+
Sbjct  727   DVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIG---LGEDE--------------RQ  769

Query  785   QFIKFTTELSKAFALASPRPETEAIRDELGYFQSVKSVLISL---DRKKKGYKSTKELKT  841
             +FIK  TEL+KAFAL +  P ++ + DE+++F++VK+ L+ L    +  K  K+  E+ +
Sbjct  770   RFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEA  829

Query  842   AVRQLVRDTVKTGEIIDVFDFMNMKKEGIGILDEKFLNEVKRMPQknlaaellekllnDK  901
              + QLV ++V T ++IDV++ + + + +++IL + FL++V  + QKN+A ELL++LL+++
Sbjct  830   EINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQ  889

Query  902   IKAYSKKNIIRSSMFSEKLQQSVNSYRNKNITNIAVVEELIKLAHEIRNEEQREGNLGLS  961
             +K+  K N   S  FSE L +S+N Y +++I    V+EELI+LA +I++E+QR  +LGL+
Sbjct  890   VKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLN  949

Query  962   TEEIAFYDALVENGSAVEQLGDEQLKKIATELVEVIHKNAGVDWTarktvkaklrlkvkk  1021
             ++EIAFYDALV + +A   + D +L+ IA EL   +  N +VDW+ R + KAK+R+ V++
Sbjct  950   SDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRR  1009

Query  1022  llkkykyPPDQQKAAVELILKQAH  1045
             LLKKY YPPD QK AVE ++ QA+
Sbjct  1010  LLKKYGYPPDLQKMAVEQVVEQAE  1033

153) ASU2_03875 in NC_018690


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  711 bits (2691),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 436/1067 (41%), Positives = 712/1067 (67%), Gaps = 58/1067 (5%)

Query  2     HINENTIEQACIQALQGLGWAYTFGSEI-------ERERAEEVVLKSVLANAITRLNPQL  54
             ++NE+ +EQ  ++ L++L+  Y  G+EI       ER    +VVL   L +A+ ++N+++
Sbjct  4     QFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDI  63

Query  55    PSNVVNDVVALVCKGDITDLTERNQQFYRLLREGVQVE-YRENDEQKIDIVRLIDFQNVH  113
              +  ++  +  +      +L E N  F   L +G+++E Y ++++  ++IV+++DF++ +
Sbjct  64    HPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQ  123

Query  114   NNQFDVVNQFTIKGVKGNRRPDVICFVNGLPLVVFELKNPLTESADLQQAFQQFQTYKAE  173
             NN+F  VNQFT+      +RPD++ F+NGLP+VV+ELKN+  E+ +++++++Q++TYK  
Sbjct  124   NNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  174   ISDLFVFNQALVISDGTHARIGSLTANFDRFTPWRVVDEKAKQRVPFENELAGLVQGLMS  233
             I++LF FN+ LV SDG +++ GSLTAN+DRF  WR  D  +    ++ + L  L++G+++
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLAS-LDVLINGMLN  242

Query  234   PENLLNYVQNFVLFERSESGLLIKKIAAYHQFYGVNEAVESTLLAASEQGDRKIGVMWHT  293
             P  LL+ ++ FVLF+    G + K +AAYHQ+Y+VN AV+ +LLA+S QGD K GV+WHT
Sbjct  243   PKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHT  302

Query  294   QGSGKSISMLFYAAKLQAEPSLRNPTIVVVTDRNDLDGQLFATF-----SAGKDLIRQTP  348
             QGSGKS++M+F+++KL     L NPT+V+VTDRNDLD QL++TF      +GK+L+RQTP
Sbjct  303   QGSGKSLTMVFFSGKLI--QMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  349   IQADGREALRTELAKRETGGIIFTTIQKFGLHEGENQHPILNDRHNIIVISDEAHRSQYG  408
              QA+ R  L++ L   E+GGI+FTT+QKF  ++ E   + L +R N+IV++DEAHR+QYG
Sbjct  361   KQAETRKELKS-LLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYG  419

Query  409   FSQHLAMGTQSATYRVGYAKHLRNALPNASFIGFTGTPISLEDKDTQAVFGRYVSIYDIQ  468
             F+       ++  Y  GYAK LR+ALPNA+F+GFTGTP++  DK+TQ VFG Y+ +YD+ 
Sbjct  420   FNAKYDDKGEGIKY--GYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMT  477

Query  469   DAVEDGATVPIVYEARQIPINESQDFKNAVREA-DDLFSDDEQSYSFRLREK------LI  521
             +AV DG+TV I YE+R IP+N +Q +   + EA +D+  D+E+    RL+ K      L 
Sbjct  478   QAVADGSTVKIYYESRVIPLNLPQSL--DLDEAYNDITEDQEEDVKQRLKSKWSRIEALA  535

Query  522   GADTRLTKLAEDLVKHFENRTALMDGKAMIVAMSRQICVVLYDKIIALRPEWHSDNLNEG  581
             GA  R+  LA D+++HFE R   M GK+MIV+MSR+I V LYD II L+PEWHSD+ + G
Sbjct  536   GAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKG  595

Query  582   AIKIVMTGSASDPDHFQPHIYGNQEKKSLEKRFKDPSDPFKLVIVRDMWLTGFDAPCCNT  641
              IK+VMTGS+SDP  FQ HI  ++ +  LEKR KD +D ++LVIVRDMWLTGFD P  +T
Sbjct  596   VIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHT  655

Query  642   MYIDKPMKGHNLMQAIARVNRVFRNKSRENGGLIVDYVGLVDELKSATAEYTNANGKGEM  701
             MYIDKPMKGHNLMQAIARVNRVF++K+   GGLIVDYVG+ + LK A  EYT+++     
Sbjct  656   MYIDKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTESDQAQTA  712

Query  702   TQDIEQIKLKFLECLDIVRGMFASPVSGQIFPL-FDALKIHDEMALFEQILTAANHILSL  760
              +    + L +L   D++++M        ++ L +  ++ +     +  I  + + +++L
Sbjct  713   IDTDKAVELMLLKY-DVIQDM--------LYNLDYSKFNSEKKSERYYTISNTMDYVIGL  763

Query  761   DQQNPVDDKAKDKTPRKNRFLQAVRLAKKGYGLCGSLPEVQVYQRELAFIDAVRAMLAK-  819
             ++++            ++RF+++V    K+++LC++ P  Q  + E+AF+ AV+A L K 
Sbjct  764   GEDE------------RQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKL  811

Query  820   ----REPNSTVNPADRQLKLVALLNQAVKADGAVDLFALLNRDQPNIEILSEQFLEKVKN  875
                 +E ++   PA+ +  +  L++Q+V +++ +D++  L  +QP++ ILS++FL  V  
Sbjct  812   LQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEG  871

Query  876   SRHQALWLEAIQRYLQAEIKEKGASNLSVQKDFETRLKEAMNKYRNQNltlleildellA  935
              +++ + +E ++R L++++K    +N +V K F   L +++NKY ++++    +++EL+ 
Sbjct  872   LKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQ  931

Query  936   MGKEFAERLARGEKLGLTPAEIAFYDALAQNESAVRELGDEVLKNLAMTITEKIRQSATI  995
             ++K++ +   RG+ LGL + EIAFYDAL  +E+A + + D  L+ +A  +T  ++++ ++
Sbjct  932   LAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSV  991

Query  996   DWQFKDSVRAKMRIEIRRALRLFKYPPDKQVEAVEFVLRQAEVIADE  1042
             DW  +DS +AKMR+ +RR L+ + YPPD Q  AVE V+ QAE++A +
Sbjct  992   DWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

154) hsdR in NC_011852


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  695 bits (2629),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 433/1065 (41%), Positives = 710/1065 (67%), Gaps = 50/1065 (4%)

Query  4     NENTIEQACLRFLQELGWDYTHGSTINADGENPWRLRTDEVVFRAVLREAVERLNPQLPS  63
             NE+ +EQ  L  L+ L+ DY  G+ I+  G  P R    +VV++  L  A+ ++N+++ +
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  64    ATVDEVVALVCKTDITDLTERNQQAYRYLREGVRVE-YRENDEQKVEFARLIDFQQPSLN  122
               ++  +  +      +L E N      L +G+ +E Y ++++  VE+ +++DF++P  N
Sbjct  66    RFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNN  125

Query  123   RFDVVNQLTILGRKGNRRPDVICYINGLPVVVLELKNPLKENADLPQAFNQLQTYKQEIG  182
              F  VNQ+T++     +RPD++ +INGLP+VV+ELKN+ +E  ++ ++++QL+TYK  I 
Sbjct  126   DFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  183   DLFVYNQALVISDGILAKVGSLTADLERFTPWRVVDEKNKQRISFEHELEGLVRGLLNPA  242
             +LF +N+ LV SDGI +K GSLTA+ +RF  WR  D       S+   L+ L+ G+LNP 
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLA-SLDVLINGMLNPK  244

Query  243   SLLDYIQNFIVFEQTSSGRLVKKIAAYHQFYGVNEAVDCTLWAASDQGNGKIGVMWHTQG  302
             +LLD I+ F++F++ + G++ K +AAYHQ+Y+VN AVD +L A+S+QG+GK GV+WHTQG
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQG  304

Query  303   SGKSLSMLFYAGKLLSQAELRNPTIVVVTDRNDLDGQLYATF-----SGGQALIRQQPVQ  357
             SGKSL+M+F++GKL+    L NPT+V+VTDRNDLD QLY+TF      +G++L+RQ P Q
Sbjct  305   SGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQ  362

Query  358   ADGrealreelakreTGGVIFTTIQKFGLQEGEQAHPVLNERHNIIVISDEAHRSQYGFS  417
             A+ R  L+  L+   +GG++FTT+QKF  ++ E   + L ER N+IV++DEAHR+QYGF+
Sbjct  363   AETRKELKSLLSVE-SGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFN  421

Query  418   QSMKLNEANRTGTYRVGYAKHLRDALPNASFIGFTGTPISLEDKDTQEVFGKYVSIYDIT  477
                K ++      Y  GYAK LRDALPNA+F+GFTGTP++  DK+TQ VFG+Y+ +YD+T
Sbjct  422   A--KYDDKGEGIKY--GYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMT  477

Query  478   DAVEDGATVPIIYEARQIPIAQSAEFENVVREAQTLLDEDDESSYNFRLREK------LM  531
             +AV DG+TV I YE+R IP+  +  ++  + EA   + ED+E   + RL+ K      L 
Sbjct  478   QAVADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALA  535

Query  532   GTDGRLSRLAEDFVKHFEQRTALIDGKAMVVAMSRQICVKLYEKITALRPEWHSDDVNEG  591
             G+  R+  LA D+++HFE R   + GK+M+V+MSR+I V LY+ I  L+PEWHSDD + G
Sbjct  536   GAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKG  595

Query  592   AIKIVMTGSASDPEEIQKHIYSSQDKKLLERRFKDPDDPLKVVIVRDMWLTGFDAPCCNT  651
              IK+VMTGS+SDP  +Q+HI + + + +LE+R KD +D L++VIVRDMWLTGFD P  +T
Sbjct  596   VIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHT  655

Query  652   MYIDKPMKGHNLMQAIARVNRVFRNKSRDNGGLIVDYVGLTSELREATEQYTRSHGKGQM  711
             MYIDKPMKGHNLMQAIARVNRVF++K+   GGLIVDYVG++  L+EA  +YT S+     
Sbjct  656   MYIDKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTESDQAQTA  712

Query  712   THNIAEIKVKMLEYIDVVRGQFATPVNGQSFKL-FDALKIEDELALFQQVMLGANYILAL  770
              +    + + +L Y DV+++ +        ++L +  ++ E     +  +    +Y+++L
Sbjct  713   IDTDKAVELMLLKY-DVIQDML--------YNLDYSKFNSEKKSERYYTISNTMDYVIGL  763

Query  771   DHQMVADKTEKTPRRNAFLKAVRLAKKGFSLCGADGDVQQYQKELAFYDAVRAILAK---  827
             +++           R+ F+K+V    K+F+LC+++   Q+ + E+AF+ AV+A L K   
Sbjct  764   GED----------ERQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQ  813

Query  828   --REPNSTASNEERQLQLVALLNKAVDASGAINLFDLLNREQPNINILSDEFLEKIKNSQ  885
               +E ++  +  E + ++  L++++V + + I++++ L  EQP+++ILSD+FL  +   +
Sbjct  814   PPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLK  873

Query  886   TKELWLLAVERYLRSQINEKGAGNLAVQKDFAERLKQALNQYHNQNLTIMQVLEELLNMS  945
              K++ +  ++R L++Q++     N +V K F+E L +++N+Y+++++   +V+EEL++++
Sbjct  874   QKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLA  933

Query  946   KEFTERLQRGEKLGLSPAEIAFYDALARNESAVRELGDDALKNLAKAITDKLRKSATIDW  1005
             K++ +  QRG+ LGL++ EIAFYDAL  +E+A + + D  L+ +A  +T  ++ + ++DW
Sbjct  934   KDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDW  993

Query  1006  QYKEAVRAKMRNLVRVTLRLFKYPPDKCDEAIQFVLEQAEVIADE  1050
               +++ +AKMR  VR  L+ + YPPD    A++ V+EQAE++A +
Sbjct  994   SKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

155) XOO3452 in NC_006834


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  693 bits (2619),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 418/897 (47%), Positives = 633/897 (71%), Gaps = 51/897 (5%)

Query  1     MQTYKQQIPALFHTNALLVTSDGIAARVGSLSADLERFMPWRTTDGKQVLPKGQPELPTL  60
             ++TYK +IP LF  N +LVTSDGI ++ GSL+A+ +RFM WR+ DG    + + + L  L
Sbjct  177   LETYKMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVL  236

Query  61    IEGVFAPQRFLELLRWFTAFGETGGG-LVKIIAGYHQFHAVNHAVESTIRASRSAVAEDP  119
             I+G++ P+ +L+L+R F  F + G G + KI+A+YHQ+ AVN AV+ ++ AS +      
Sbjct  237   INGMLNPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQ-----  291

Query  120   AKYGSASVKAQPAGDRRAGVIWHTQGSGKSLLMAFYAGRLVQHPAMRNPTLVVLTDRNDL  179
                          GD ++GVIWHTQGSGKSL M F++G+L+Q   + NPTLV++TDRNDL
Sbjct  292   -------------GDGKGGVIWHTQGSGKSLTMVFFSGKLIQ--MLNNPTLVIVTDRNDL  336

Query  180   DDQLFGTFSMCKA-----LLRQTPVQADSREDLARLLDRASGGVIFTTLQKFG-----EV  229
             D+QL++TF   K+     LLRQTP QA++R +L  LL   SGG++FTT+QKF       +
Sbjct  337   DNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETI  396

Query  230   DAPLTARRNVVVIADEAHRSQYGLKAKLDAKTGMVSYGFAKYMRDALPNASFIGFTGTPI  289
              A+LT R+NV+V+ADEAHR+QYG++AK D K   + YG+AKY+RDALPNA+F+GFTGTP+
Sbjct  397   MAALTERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPV  456

Query  290   EATDVNTPALFGHYIDVYDISRAVEDGATVPIYYESRLARIELDEDEKPHLDAEVEALFE  349
              +TD NT  +FG+YIDVYD+++AV DG+TV IYYESR+  ++L +    +LD   + + E
Sbjct  457   ASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQS--LDLDEAYNDITE  514

Query  350   WEGTDEKEKLKGRAAAVERLVGSQKRLALVAQDLVTHFEERVAALDGKAMAVCMSREICV  409
              +  D K++LK++ + +E L G++ R+  +A+D++ HFE R  A+ GK+M V MSR I V
Sbjct  515   DQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAV  574

Query  410   DLYNEIVKLRPHWHSDDDTLGAVKIVMTGAASDPTQWQQHIGNkarrdalarrakdpadp  469
             DLY+EI++L+P+WHSDDD  G +K+VMTG++SDPT  Q+HIG K RR  L +R KD  D 
Sbjct  575   DLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDE  634

Query  470   LKLVIVRDMWLTGFDAPSMHTMYVDKPMKGHGLMQAIARVNRVFRDKPAGLIVDYIGIAQ  529
             L+LVIVRDMWLTGFD PSMHTMY+DKPMKGH LMQAIARVNRVF+DKP+GLIVDY+GIA+
Sbjct  635   LQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAE  694

Query  530   NLKSALAQYSPQDKQNTGIDEAQAIAVMREKYEVVRDMYHGFDYLTALNGTPQQRLTMMA  589
             +LK AL +Y+  D+ +T+ID  +A+ +M  KY+V++DM   +DY    +    +R   ++
Sbjct  695   SLKEALKEYTESDQAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTIS  754

Query  590   GAIEWILDQQQQWVaaassddgkkaaQRRYQDavlalstayalasasDEALAVREEVGFF  649
              +++ +++  ++              ++R+  +V  L+ A+AL ++   A  + +E++FF
Sbjct  755   NTMDYVIGLGED-------------ERQRFIKTVTELGKAFALCATEPTAQELNDEIAFF  801

Query  650   QAIREALVK-----SATGSGINSQERDFAIRQIVSRAVVSTEIVDILKAAGIQSPDISIL  704
             +A++ +LVK         +   + E +  I Q+VS++VV+ +++D+ ++ G++ PD+SIL
Sbjct  802   KAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSIL  861

Query  705   SDEFLAEVQRMDKKNLALEALRKLINDGIRSRSKRNIVETKAFSERLEDAIARYHANAIT  764
             SD+FL +V+ + +KN+A+E L +L+++ ++S  K N   +K FSE L ++I +Y++ +I 
Sbjct  862   SDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIE  921

Query  765   TAEVLQELICIAKDIRAARARGEEQGLSEDEVAFYDALAENDSAVQLMGDDALKVIAHEL  824
             T+ V++ELI +AKDI+  + RG+E GL+ DE+AFYDAL  +++A + M D  L+ IAHEL
Sbjct  922   TSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHEL  981

Query  825   LVSLKGSASVDWARRDSARARMRVLVKRILRKYGYPPDLQDAAVRTVLQQAEALSAG  881
               ++K + SVDW++RDSA+A+MRV V+R+L+KYGYPPDLQ  AV  V++QAE +++ 
Sbjct  982   TKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

156) CGSHiEE_04165 in NC_009566


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  693 bits (2622),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 448/1082 (42%), Positives = 733/1082 (68%), Gaps = 82/1082 (7%)

Query  9     NENDIEQLTLQRLQSLGWEYRYGKDLPVHEGKFARGDLSGVVFVEQLREAVRKLNPQLPE  68
             NE+D+EQ+ L++L+SL+ +Y+ G+++++      R    +VV+ E+L  A+RK+N+++  
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  69    SAVDSVVKSATKSDIGDLVVRNQTFYKLLRDGVRVE-YTQNGEQKIEMVRLVDFEHWGNN  127
               ++  +   T     +L+  N TF   L +G+ +E Y ++G+  +E+V++VDFEH  NN
Sbjct  66    RFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNN  125

Query  128   RFVAVNQLEIRSRKGGKRIPDIIGFVNGLPLVVFELKNPLRESADLLQAFNQFETYKDEI  187
              F+AVNQ+ + +    KR PDI+ F+NGLP+VV+ELKN+  E+ ++ ++++Q+ETYK  I
Sbjct  126   DFLAVNQFTVVNGDYTKR-PDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  188   AELFVYNQALIISDGIVARLGSLSADFQRFTPWKVVD-EKNKSARLYFDDELQSLLNGLL  246
             ++LF +N+ L+ SDGI ++ GSL+A+++RF  W+  D E + S+ L     L+ L+NG+L
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSL---ASLDVLINGML  241

Query  247   QPKDLLDYIRYFVLFERDSVGKTIKKIAAYHQYYGVNEAVEPTIFATSEQGDKRIGVMWH  306
             +PK LLD IRYFVLF+ D+ G   K +AAYHQYY+VN AV+ +++A+S QGD + GV+WH
Sbjct  242   NPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWH  301

Query  307   TQGSGKSISMLFYAGKLLAQPELKNPTIVVVTDRNDLDGQLFQTF-----SSGKDLIKQT  361
             TQGSGKS++M+F++GKL+    L+NPT+V+VTDRNDLD QL+ TF      SGK+L++QT
Sbjct  302   TQGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQT  359

Query  362   PQQVEDRDQLRQLLAQNEVGDVFFTTIQKFALNEEESRFPILNERNNIIVISDEAHRSQY  421
             P+Q E R +L+ LL+  E G++ FTT+QKF  +++E+  + L ER+N+IV++DEAHR+QY
Sbjct  360   PKQAETRKELKSLLS-VESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQY  418

Query  422   GFTQKLHN--GKFQTGYARHLRDALPNASFIGFTGTPISLEDKDTQDVFGRYVSIYDLQD  479
             GF  K ++    ++ GYA+ LRDALPNA+F+GFTGTP++  DK+TQ VFG Y+ +YD+ +
Sbjct  419   GFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQ  478

Query  480   AVEDGATVPIVYEAR--QIKLAENANHDELFAEIDELLEGEENPKLRLREK------LFG  531
             AV DG+TV I YE+R   ++L+++ + DE + +I E  + EE+ K RL+ K      L G
Sbjct  479   AVADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITE--DQEEDVKQRLKSKWSRIEALAG  536

Query  532   SEARLHDLAIDFVQHFAKRNEVVDSKAMMVVSSRQICVDLYNEIIKLRPEWHSDNINEGA  591
             + +R++ LA D++QHF  R++ + +K+M+V  SR+I VDLY+EII+L+PEWHSD+ + G 
Sbjct  537   AKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGV  596

Query  592   IKIVMTGSASDASEMQKHVYSKQEKQTLERRFKDPNDPLKVVIVRDMWLTGFDAPCCNTM  651
             IK+VMTGS+SD++  Q+H+ +K+ +  LE+R KD ND L++VIVRDMWLTGFD P  +TM
Sbjct  597   IKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTM  656

Query  652   YLDKPMKGHNLMQAIARVNRVFRNKSRENGGLIVDYVGIADELEKATRQYTNSQGKGKLA  711
             Y+DKPMKGHNLMQAIARVNRVF++K+   GGLIVDYVGIA+ L  A ++YT+S+      
Sbjct  657   YIDKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTESD------  707

Query  712   DSVIDVFFKMKEHLEVIRSLFATPVEGKTFDVQTVLEKDNPNDLLMAIRFAANHIL--SL  769
                                           + QT ++ D++ +L++ +++   + +  +L
Sbjct  708   ------------------------------QAQTAIDTDKAVELML-LKYDVIQDMLYNL  736

Query  770   DQLSFDGKAHEQHWFNKKET--------EPRKKAFLKAAGLVKKGYMLCGTLAEVEPYNQ  821
             D   F++    ++ +   +T        E  ++ F+K+   + K++ LC+T +  +  N+
Sbjct  737   DYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELND  796

Query  822   EIAFYDAVRAILTK-----REQKG-TGTNERQILLKKLVNQTVYSEGVIDLFDLLEKPQP  875
             EIAF+ AV+A L K     +E K      E +  +++LV+Q+V +E+VID+++ L   QP
Sbjct  797   EIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQP  856

Query  876   QISLLSEEFLQTVKNSPTKNLWVTAMERYLASEIKVKSGTNLTLQKDFERRLKEALNQYH  935
             ++S+LS++FL+ V     KN+ V  ++R L +++K    TN T+ K F   L +++N+Y+
Sbjct  857   DLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYN  916

Query  936   NHNLTVVEILDELFKMSQDFQERlalgkklgltkeelaFYEALSQNQSAKDLMGDEVLSK  995
             ++++    +++EL+++++D+++    G+ LGL  +E+AFY+AL  +++AK  M D  L  
Sbjct  917   SRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRA  976

Query  996   LAKEITETLRKSVTIDWQYKEAVRAKMRILVKRALQRYKYPPDKQEEAITYVIKQAEEIA  1055
             +A E+T T++ ++++DW  +++ +AKMR+ V+R L++Y YPPD Q  A+  V+ QAE +A
Sbjct  977   IAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMA  1036

Query  1056  ED  1057
              +
Sbjct  1037  SN  1038

157) hsdR in NC_017452


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  693 bits (2621),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 448/1082 (42%), Positives = 733/1082 (68%), Gaps = 82/1082 (7%)

Query  3     NENDIEQLTLQRLQSLGWEYRYGKDLPVHEGKFARGDLSGVVFVEQLREAVRKLNPQLPE  62
             NE+D+EQ+ L++L+SL+ +Y+ G+++++      R    +VV+ E+L  A+RK+N+++  
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  63    SAVDSVVKSATKSDIGDLVVRNQTFYKLLRDGVRVE-YTQNGEQKIEMVRLVDFEHWGNN  121
               ++  +   T     +L+  N TF   L +G+ +E Y ++G+  +E+V++VDFEH  NN
Sbjct  66    RFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNN  125

Query  122   RFVAVNQLEIRSRKGGKRIPDIIGFVNGLPLVVFELKNPLRESADLLQAFNQFETYKDEI  181
              F+AVNQ+ + +    KR PDI+ F+NGLP+VV+ELKN+  E+ ++ ++++Q+ETYK  I
Sbjct  126   DFLAVNQFTVVNGDYTKR-PDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  182   AELFVYNQALIISDGIVARLGSLSADFQRFTPWKVVD-EKNKSARLYFDDELQSLLNGLL  240
             ++LF +N+ L+ SDGI ++ GSL+A+++RF  W+  D E + S+ L     L+ L+NG+L
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSL---ASLDVLINGML  241

Query  241   QPKDLLDYIRYFVLFERDSVGKTIKKIAAYHQYYGVNEAVESTIFATSEQGDKRIGVMWH  300
             +PK LLD IRYFVLF+ D+ G   K +AAYHQYY+VN AV+ +++A+S QGD + GV+WH
Sbjct  242   NPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWH  301

Query  301   TQGSGKSISMLFYAGKLLAQPELKNPTIVVVTDRNDLDGQLFQTF-----SSGKDLIKQT  355
             TQGSGKS++M+F++GKL+    L+NPT+V+VTDRNDLD QL+ TF      SGK+L++QT
Sbjct  302   TQGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQT  359

Query  356   PQQVEDRDQLRQLLAQNEVGDVFFTTIQKFALNEEESRFPILNERNNIIVISDEAHRSQY  415
             P+Q E R +L+ LL+  E G++ FTT+QKF  +++E+  + L ER+N+IV++DEAHR+QY
Sbjct  360   PKQAETRKELKSLLS-VESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQY  418

Query  416   GFTQKLHN--GKFQTGYARHLRDALPNASFIGFTGTPISLEDKDTQDVFGRYVSIYDLQD  473
             GF  K ++    ++ GYA+ LRDALPNA+F+GFTGTP++  DK+TQ VFG Y+ +YD+ +
Sbjct  419   GFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQ  478

Query  474   AVEDGATVPIVYEAR--QIKLAENANHDELFAEIDELLEGEENPKLRLREK------LFG  525
             AV DG+TV I YE+R   ++L+++ + DE + +I E  + EE+ K RL+ K      L G
Sbjct  479   AVADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITE--DQEEDVKQRLKSKWSRIEALAG  536

Query  526   SEARLHDLAIDFVQHFAKRNEVVDSKAMMVVSSRQICVDLYNEIIKLRPEWHSDNINEGA  585
             + +R++ LA D++QHF  R++ + +K+M+V  SR+I VDLY+EII+L+PEWHSD+ + G 
Sbjct  537   AKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGV  596

Query  586   IKIVMTGSASDASEMQKHVYSKQEKQTLERRFKDPNDPLKVVIVRDMWLTGFDAPCCNTM  645
             IK+VMTGS+SD++  Q+H+ +K+ +  LE+R KD ND L++VIVRDMWLTGFD P  +TM
Sbjct  597   IKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTM  656

Query  646   YLDKPMKGHNLMQAIARVNRVFRNKSRENGGLIVDYVGIADELEKATRQYTNSQGKGKLA  705
             Y+DKPMKGHNLMQAIARVNRVF++K+   GGLIVDYVGIA+ L  A ++YT+S+      
Sbjct  657   YIDKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTESD------  707

Query  706   DSVIDVFFKMKEHLEVIRSLFATPVEGKTFDVQTVLEKDNPNDLLMAIRFAANHIL--SL  763
                                           + QT ++ D++ +L++ +++   + +  +L
Sbjct  708   ------------------------------QAQTAIDTDKAVELML-LKYDVIQDMLYNL  736

Query  764   DQLSFDGKAHEQHWFNKKET--------EPRKKAFLKAAGLVKKGYMLCGTLAEVEPYNQ  815
             D   F++    ++ +   +T        E  ++ F+K+   + K++ LC+T +  +  N+
Sbjct  737   DYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELND  796

Query  816   EIAFYDAVRAILTK-----REQKG-TGTNERQILLKKLVNQTVYSEGVIDLFDLLEKPQP  869
             EIAF+ AV+A L K     +E K      E +  +++LV+Q+V +E+VID+++ L   QP
Sbjct  797   EIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQP  856

Query  870   QISLLSEEFLQTVKNSPTKNLWVTAMERYLASEIKVKSGTNLTLQKDFERRLKEALNQYH  929
             ++S+LS++FL+ V     KN+ V  ++R L +++K    TN T+ K F   L +++N+Y+
Sbjct  857   DLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYN  916

Query  930   NHNLTVVEILDELFKMSQDFQERlalgkklgltkeelaFYEALSQNQSAKDLMGDEVLSK  989
             ++++    +++EL+++++D+++    G+ LGL  +E+AFY+AL  +++AK  M D  L  
Sbjct  917   SRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRA  976

Query  990   LAKEITETLRKSVTIDWQYKEAVRAKMRILVKRALQRYKYPPDKQEEAITYVIKQAEEIA  1049
             +A E+T T++ ++++DW  +++ +AKMR+ V+R L++Y YPPD Q  A+  V+ QAE +A
Sbjct  977   IAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMA  1036

Query  1050  ED  1051
              +
Sbjct  1037  SN  1038

158) K756_04780 in NC_021521


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  693 bits (2621),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 434/1064 (41%), Positives = 710/1064 (67%), Gaps = 48/1064 (4%)

Query  4     NENTIEQACLRFLQELGWDYTHGSTINADGENPWRLRTDEVVFRSVLREAVERLNPQLPS  63
             NE+ +EQ  L  L+ L+ DY  G+ I+  G  P R    +VV++  L  A+ ++N+++ +
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  64    ATVDEVVALVCKTDITDLTERNQQAYRYLREGVRVE-YRENDEQKVEFARLIDFQQPNLN  122
               ++  +  +      +L E N      L +G+ +E Y ++++  VE+ +++DF++P+ N
Sbjct  66    RFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNN  125

Query  123   RFDVVNQLTIAGRKGNRRPDVICYINGLPVVVLELKNPLKENADLPQAFNQLQTYKQEIG  182
              F  VNQ+T+      +RPD++ +INGLP+VV+ELKN+ +E  ++ ++++QL+TYK  I 
Sbjct  126   DFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  183   DLFVYNQALVISDGILAKVGSLTADLERFTPWRVVDEKNKQRISFEHELEGLVRGLLNPA  242
             +LF +N+ LV SDGI +K GSLTA+ +RF  WR  D       S+   L+ L+ G+LNP 
Sbjct  186   QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLA-SLDVLINGMLNPK  244

Query  243   SLLDYIQNFIVFEQTSSGRLVKKIAAYHQFYGVNEAVDCTLWAASEQGNGKIGVMWHTQG  302
             +LLD I+ F++F++ + G++ K +AAYHQ+Y+VN AVD +L A+S QG+GK GV+WHTQG
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQG  304

Query  303   SGKSLSMLFYAGKLLSQAELRNPTIVVVTDRNDLDGQLYATF-----SGGQALIRQQPVQ  357
             SGKSL+M+F++GKL+    L NPT+V+VTDRNDLD QLY+TF      +G++L+RQ P Q
Sbjct  305   SGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQ  362

Query  358   ADGrealreelakreTGGVIFTTIQKFGLQEGEQAHPVLNERHNIIVISDEAHRSQYGFS  417
             A+ R  L+  L+   +GG++FTT+QKF  ++ E   + L ER N+IV++DEAHR+QYGF+
Sbjct  363   AETRKELKSLLSVE-SGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFN  421

Query  418   QSVKLNELNRTGTYRVGYAKHLRDALPNASFIGFTGTPISLEDKDTQEVFGKYVSIYDIT  477
                K ++      Y  GYAK LRDALPNA+F+GFTGTP++  DK+TQ VFG+Y+ +YD+T
Sbjct  422   --AKYDDKGEGIKY--GYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMT  477

Query  478   DAVEDGATVPIIYEARQIPIAQSAEFDNVVQEAQTLIDEDDESSYNFRLREK------LM  531
             +AV DG+TV I YE+R IP+  +  +D  ++EA   I ED+E   + RL+ K      L 
Sbjct  478   QAVADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALA  535

Query  532   GTEGRLSRLAEDFVKHFEQRTALIDGKAMVVAMSRQICVKLYEKITALRPEWHSDDVNEG  591
             G+  R+  LA D+++HFE R   + GK+M+V+MSR+I V LY+ I  L+PEWHSDD + G
Sbjct  536   GAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKG  595

Query  592   AIKIVMTGSASDPADIQKHIYSSQDKKLLERRFKDPDDPLKIVIVRDMWLTGFDAPCCNT  651
              IK+VMTGS+SDP+ +Q+HI + + + +LE+R KD +D L++VIVRDMWLTGFD P  +T
Sbjct  596   VIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHT  655

Query  652   MYIDKPMKGHNLMQAIARVNRVFRNKSRDNGGLIVDYVGLTSELREATEQYTRSHGKGQM  711
             MYIDKPMKGHNLMQAIARVNRVF++K+   GGLIVDYVG++  L+EA  +YT S+     
Sbjct  656   MYIDKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTESDQAQTA  712

Query  712   THNIAETKAKMLEYIDVVRGQFATPVNDQPFKLFDALKIEDELALFKQVMLGANHILALD  771
              +        +L Y DV+++     + +  +  F++ K  +    + + M   + +++L+
Sbjct  713   IDTDKAVELMLLKY-DVIQDM----LYNLDYSKFNSEKKSERYYTISNTM---DYVIGLG  764

Query  772   HQTVADKTEKTLRRNAFLKAVRLAKKGFSLCGADGDVQQYQKELAFYDAVRAILAK----  827
             ++           R+ F+K+V    K+F+LC+++   Q+ + E+AF+ AV+A L K    
Sbjct  765   EDE----------RQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQP  814

Query  828   -REPNSTASSEERQLQLVALLNKAVDASGAINLFDLLNREQPNINILSEEFLEKIKNSQT  886
              +E ++  ++ E + ++  L++++V + + I++++ L  EQP+++ILS++FL  +   + 
Sbjct  815   PKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQ  874

Query  887   KELWLLAVERYLRSQINEKGTGNLAVQKDFAERLKQALNQYHNQNLTIMQVLEELLNMSK  946
             K++ +  ++R L++Q++     N +V K F+E L +++N+Y+++++   +V+EEL++++K
Sbjct  875   KNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAK  934

Query  947   EFTERLQRGEKLGLSPAEIAFYDALARNESAVRELGDDALKNLAKAITDKLRKSATIDWQ  1006
             ++ +  QRG+ LGL++ EIAFYDAL  +E+A + + D  L+ +A  +T  ++ + ++DW 
Sbjct  935   DIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWS  994

Query  1007  YKEAVRAKMRNLVRVTLRLFKYPPDKCDEAIQFVLEQAEVIADE  1050
              +++ +AKMR  VR  L+ + YPPD    A++ V+EQAE++A +
Sbjct  995   KRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

159) GWCH70_1642 in NC_012793


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  689 bits (2607),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 440/1048 (42%), Positives = 719/1048 (69%), Gaps = 61/1048 (5%)

Query  2     FTEEQLENVVIEYFQELGYNYLPASEL--------KRDEKEVLLFDRLEAALVRLNPSLS  53
             F E++LE+VV+E ++ L+Y+Y  ++E+        ++ +K+V+L +RLE AL ++N+ + 
Sbjct  5     FNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIH  64

Query  54    LDVIREAIRKIRHFETNDVFTNNKVFHKYLTETVEVAEFVN-GETVYHRVRLIDWEVPEN  112
                I  AI+ +    + +++ NN  FH  L + +E+ ++ + G+++ + V+++D E P+N
Sbjct  65    PRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQN  124

Query  113   NDFLVVNQLEVVEKGQKKIPDIVLYVNGIPLVVFELKSTSREEVDIEDAYKQLKNYMNVH  172
             NDFL VNQ+ VV+ +  K PDIVL++NG+P+VV+ELK+++ E V++ED+Y QL  Y +++
Sbjct  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY-KMR  183

Query  173   IPSLFYYNAFLVISDGVKARAGTITAPLDRFLAWKKIHIEDEVVEN-RELETLMYGLFNQ  231
             IP LF +N  LV SDG++++AG++TA  DRF++W+  + E E   +   L+ L+ G++N 
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNP  243

Query  232   KRFLDVIKNFTLFTNEAK-----IMAAYHQYYGMKKAIESTIRAVGK--DGRAGVIWHTQ  284
             K +LD+I+ F LF +++K     I+AAYHQYY+++KA++ ++ A +   DG++GVIWHTQ
Sbjct  244   KTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQ  303

Query  285   GSGKSYSMVFLAGNLVKREELKNPTIVVITDRNDLDGQLFETF-----SGASEFLRQTPQ  339
             GSGKS +MVF++G+L++   L+NPT+V++TDRNDLD QL+ TF      ++  +LRQTP+
Sbjct  304   GSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPK  361

Query  340   QAETRSHIKELLENRQTGGIIFSTIQKFEEET-----GLLSDRENIIVMVDEAHRSQYGV  394
             QAETR ++K LL + ++GGI+F+T+QKFE E      + L++R N+IVM DEAHR+QYG 
Sbjct  362   QAETRKELKSLL-SVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGF  420

Query  395   DPKYDIVTGEQKYGYAKYLREALPNATYIAFTGTPIETTDKSTTGLFGDVIDVYDMTQAV  454
             ++KYD      KYGYAKYLR+ALPNAT+++FTGTP+ +TDK+T  +FG+ IDVYDMTQAV
Sbjct  421   NAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV  480

Query  455   QDGATVKIYYESRLAKVKLDEKKMNEIDQEYWNMQVNEGVDDYIVEQSQKSLSRMEQIIG  514
              DG+TVKIYYESR+  ++L +    ++D+ Y   ++ E+ ++ + ++ +   SR+E + G
Sbjct  481   ADGSTVKIYYESRVIPLNLPQS--LDLDEAY--NDITEDQEEDVKQRLKSKWSRIEALAG  536

Query  515   DKDRIREVVADIISHYEERENLVAGKAMIVAYSRKTAFAMYKEIMRQRPDW------KEK  568
              K R+  +  DII H+E R++ + GK+MIV+ SR+ A  +Y EI+R +P+W      K  
Sbjct  537   AKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGV  596

Query  569   VKIVMTENNQDPEELAKLVGNKQTRKQREKEFKDVNHPFKIVIVVDMWLTGFDVPALDTM  628
             +K+VMT ++ DP  + + +G K+ R   EK  KDVN+ +++VIV DMWLTGFDVP+++TM
Sbjct  597   IKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTM  656

Query  629   YIDKPMKAHNLMQAIARVNRVYPGKTGGLIVDYIGLKRDLMEALKTYTKRDQDKVQENEQ  688
             YIDKPMK+HNLMQAIARVNRV+ +K GGLIVDY+G+   L EALK YT  DQ +    + 
Sbjct  657   YIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQT-AIDT  715

Query  689   ARDIALNIL--EVLRNMFHEFDYSAFFGDSDKKRYEVIRDGAEFV-QQTEKRKSLFMTET  745
              + + L +L  +V+++M+ ++DYS F ++    RY  I +  ++V    E  +  F+   
Sbjct  716   DKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTV  775

Query  746   KKLKDVYKIC-TGLLSKEQKEEISYFIAVRSFIMK--------SSRKGAPDLKEVNERIS  796
               L   + +C T   ++E ++EI++F AV++ ++K         +RK ++   EV+  I+
Sbjct  776   TELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPA---EVEAEIN  832

Query  797   KMLEEAILEDEVMVLTQASSSESFDL--LNEENIKKLRALPQKNIAANILMRVLKEKLQD  854
             +++ ++++ ++V+ + Q+ + E  DL  L+++ +K + +L QKN+A ++L R+LK +++ 
Sbjct  833   QLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKS  892

Query  855   VKKKNMTVSQTFSKRFEKILEKYNNRNDYTDVYevfeelikfkeeleAAIQAGKQLGLTD  914
             + K N TVS+ FS  + + ++KYN+R+   +   V+EELI++  ++    Q G++LGL  
Sbjct  893   LMKTNATVSKRFSEMLGNSINKYNSRS--IETSKVIEELIQLAKDIKQEQQRGNELGLNS  950

Query  915   EEKAFFDVLGSDPDIKKLMEDEILIKIAKELAKTVKENRTHDWDKKEQAQARMRLQIKKV  974
             +E AF+D L S+   KK MED  L  IA EL+KTVKEN + DW K++ A+A+MR+ ++++
Sbjct  951   DEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRL  1010

Query  975   LRKYDYPPNKQPKAVEDVLMQAKLQCQN  1002
             L+KY+YPP+ Q  AVE+V+ QA L   N
Sbjct  1011  LKKYGYPPDLQKMAVEQVVEQAELMASN  1038

160) hsdR3 in NC_014920


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  687 bits (2598),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 447/1082 (42%), Positives = 730/1082 (68%), Gaps = 82/1082 (7%)

Query  3     NENDIEQLTLQRLQSLGWEYRYGKDLPVHEGEFARGDLSGVVFVEQLREAVRKLNPQLPE  62
             NE+D+EQ+ L++L+SL+ +Y+ G+++++      R    +VV+ E+L  A+RK+N+++  
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  63    SAVDSVVKSATKSDIGDLVVRNQAFYKLLRDGVRVE-YTLNGEQKIEMVRLVDFEHWGNN  121
               ++  +   T     +L+  N +F   L +G+ +E Y  +G+  +E+V++VDFEH  NN
Sbjct  66    RFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNN  125

Query  122   RFVAVNQLEIRSRKGGKRIPDIIGFVNGLPLVVFELKNPLRKSADLLQAFNQFETYKDEI  181
              F+AVNQ+ + +    KR PDI+ F+NGLP+VV+ELKN+   + ++ ++++Q+ETYK  I
Sbjct  126   DFLAVNQFTVVNGDYTKR-PDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  182   AELFVYNQALIISDGIVARLGSLSADFQRFTPWKVVD-EKNKSARLYFDDELQSLLNGLL  240
             ++LF +N+ L+ SDGI ++ GSL+A+++RF  W+  D E + S+ L     L+ L+NG+L
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSL---ASLDVLINGML  241

Query  241   KPEDLLDYIRYFVLFEWDSVGKTIKKIAAYHQYYGVNEAVDSTIWATSEKGDRRIGVMWH  300
             +P  LLD IRYFVLF+ D+ G   K +AAYHQYY+VN AVD ++ A+S +GD + GV+WH
Sbjct  242   NPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWH  301

Query  301   TQGSGKSISMLFYAGKLLAQPELKNPTIVVVTDRNDLDGQLFQTF-----SSGKDLIKQT  355
             TQGSGKS++M+F++GKL+    L+NPT+V+VTDRNDLD QL+ TF      SGK+L++QT
Sbjct  302   TQGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQT  359

Query  356   PQQVEDRDQLRQLLAQNEVGGVFFTTIQKFALNEEESRFPILNERNNIIVISDEAHRSQY  415
             P+Q E R +L+ LL+  E GG+ FTT+QKF  +++E+  + L ER+N+IV++DEAHR+QY
Sbjct  360   PKQAETRKELKSLLS-VESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQY  418

Query  416   GFTQKLHN--GKFQTGYARHLRDALPNASFIGFTGTPISLEDKDTQDVFGRYVSIYDLQD  473
             GF  K ++    ++ GYA+ LRDALPNA+F+GFTGTP++  DK+TQ VFG Y+ +YD+ +
Sbjct  419   GFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQ  478

Query  474   AVEDGATVPIIYEARQI--KLAENANHDELFAEIDELLEGEENPKLRLREK------LLG  525
             AV DG+TV I YE+R I  +L+++ + DE + +I E  + EE+ K RL+ K      L G
Sbjct  479   AVADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITE--DQEEDVKQRLKSKWSRIEALAG  536

Query  526   SEARLHDLAVDFVQHFAKRNEVADSKAMMVVSSRQICVDLYNEIIKLRPEWHSDNINEGA  585
             + +R++ LA D++QHF  R++   +K+M+V  SR+I VDLY+EII+L+PEWHSD+ + G 
Sbjct  537   AKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGV  596

Query  586   IKIVMTGSASDAPEMQKHVYSKQEKQTLERRFKDPNDPLKVVIVRDMWLTGFDAPCCNTM  645
             IK+VMTGS+SD+   Q+H+ +K+ +  LE+R KD ND L++VIVRDMWLTGFD P  +TM
Sbjct  597   IKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTM  656

Query  646   YIDKPMQGHNLMQAIARVNRVFRNKSRENGGLIVDYVGIADELKDATQQYTNSQGKGKLA  705
             YIDKPM+GHNLMQAIARVNRVF++K+   GGLIVDYVGIA+ LK+A ++YT+S+      
Sbjct  657   YIDKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTESDQ-----  708

Query  706   DSVIDVFFKMKEHLEVIRSLFATPVEGKTFYVQTVLEKDNPNELLMAIRFAANHIL--SL  763
                                             QT ++ D++ EL++ +++   + +  +L
Sbjct  709   -------------------------------AQTAIDTDKAVELML-LKYDVIQDMLYNL  736

Query  764   DQLPFDGKAHEQHWFNKKET--------EPRKKAFLKAAGLVKKGYMLCGALAEVEPYNQ  815
             D   F++    ++ +   +T        E  ++ F+K+   + K++ LC++ +  +  N+
Sbjct  737   DYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELND  796

Query  816   EIAFYDAVRAILTR-----REQKG-TGTNERQILLKKLVNQTVYSEGVIDLFDLLEKPQP  869
             EIAF+ AV+A L +     +E K      E +  +++LV+Q+V +E+VID+++ L   QP
Sbjct  797   EIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQP  856

Query  870   QISLLSEEFLQTVKNSPTKNLWVTAMERYLASEIKAKSGANLTLQKDFEQRLKEALNQYH  929
             ++S+LS++FL+ V     KN+ V  ++R L +++K+   +N T+ K F + L +++N+Y+
Sbjct  857   DLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYN  916

Query  930   NHNLTVVEILDELFKMSQDFQERlalgkklgltkeelaFYEALSQNQSAKDLMGDEVLSK  989
             ++++    +++EL+++++D+++    G+ LGL  +E+AFY+AL  +++AK  M D  L  
Sbjct  917   SRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRA  976

Query  990   LAKEITETLRKSVTIDWQYKEAVRAKMRILVKRTLQRYKYPPDKQEEAVTYVIKQAEEIA  1049
             +A E+T T++ ++++DW  +++ +AKMR+ V+R L++Y YPPD Q  AV  V+ QAE +A
Sbjct  977   IAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMA  1036

Query  1050  ED  1051
              +
Sbjct  1037  SN  1038

161) PARA_15870 in NC_015964


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  681 bits (2574),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 447/1082 (42%), Positives = 725/1082 (68%), Gaps = 83/1082 (7%)

Query  3     NENDIEQLTLKHLQSLGWEYRYGKDLPVHEGEFARGDLSGVVFVEQLREAVRKFNPQLPE  62
             NE+D+EQ+ L  L+SL+ +Y+ G+++++      R    +VV+ E+L  A+RK+N+++  
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  63    SAVDSVVKSATKSDIGNLVVRNQAFYKLLRDGVRVE-YTLNGEQKIEMASLVDFEHVGNN  121
               ++  +   T     NL+  N +F   L +G+ +E Y  +G+  +E+  +VDFEH  NN
Sbjct  66    RFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNN  125

Query  122   CFVAVNQLEIRSRKGGKRIPDIIGFVNGLPLVVFELKNPLRESADLLQAFNQFETYKDEI  181
              F+AVNQ+ + +    KR PDI+ F+NGLP+VV+ELKN+  E+ ++ ++++Q+ETYK  I
Sbjct  126   DFLAVNQFTVVNGDYTKR-PDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  182   AELFVYNKALIISDGIAARLGSLSADFQRFTPWKVVD-EKNKSARLYFDDELQSLLNGLL  240
             ++LF +N  L+ SDGI ++ GSL+A+++RF  W+  D E + S+ L     L+ L+NG+L
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSL---ASLDVLINGML  241

Query  241   KPEDLLDYIRYFVLFERNSSGKTIKKIAAYHQYYGVNEAVDSTLFATSEKGDRRIGVMWH  300
             +P  LLD IRYFVLF+ ++ G   K +AAYHQYY+VN AVD +L+A+S +GD + GV+WH
Sbjct  242   NPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWH  301

Query  301   TQGSGKSISMLFYAGKLLTQPELKNPTIVVVTDRNDLDGQLFQTF-----SSGKDLIKQT  355
             TQGSGKS++M+F++GKL+    L+NPT+V+VTDRNDLD QL+ TF      SGK+L++QT
Sbjct  302   TQGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQT  359

Query  356   PQQVEDRDQLRQLLAQNEVGGVFFTTIQKFALNEEESRFPVLNERSNIIVISDEAHRSQY  415
             P+Q E R +L+ LL+  E GG+ FTT+QKF  +++E+  + L ER N+IV++DEAHR+QY
Sbjct  360   PKQAETRKELKSLLS-VESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQY  418

Query  416   GFTQKLH-KGK-FQAGYARHLRDALPNASFIGFTGTPISLEDKDTQDVFGRYVSIYDLQD  473
             GF  K + KG  ++ GYA+ LRDALPNA+F+GFTGTP++  DK+TQ VFG Y+ +YD+ +
Sbjct  419   GFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQ  478

Query  474   AVEDGATVPIVYEARQIRLN---EKEHDELFKEIDDLLEEEQSPALRLQEK------LLG  524
             AV DG+TV I YE+R I LN     + DE +++I +  ++E+    RL+ K      L G
Sbjct  479   AVADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITE--DQEEDVKQRLKSKWSRIEALAG  536

Query  525   SQARLADLAADFVQHFAKRNEVVDSKAMMVVSSRQICVDLYNEIIKLHPEWHSDNINEGA  584
             +++R+  LA D++QHF  R++ + +K+M+V  SR+I VDLY+EII+L PEWHSD+ + G 
Sbjct  537   AKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGV  596

Query  585   IKIVMTGSASDAPEMQKHVYSKQEKQTLERRFKDPNDPLKVVIVRDMWLTGFDAPCCNTM  644
             IK+VMTGS+SD+   Q+H+ +K+ +  LE+R KD ND L++VIVRDMWLTGFD P  +TM
Sbjct  597   IKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTM  656

Query  645   YIDKPMQGHNLMQAIARVNRVFRNKSRENGGLIVDYVGIAEKLKEATQQYTNSQGKGKLT  704
             YIDKPM+GHNLMQAIARVNRVF++K+   GGLIVDYVGIAE LKEA ++YT+S+      
Sbjct  657   YIDKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTESD------  707

Query  705   DNVIDVFFKMKEHLEFVRSLFATPVEGKTFDVQTALEKDDPKDLLVEIRFAANHIL--GL  762
                                           + QTA++ D + +L++ +++   + +   L
Sbjct  708   ------------------------------QAQTAIDTDKAVELML-LKYDVIQDMLYNL  736

Query  763   DRLPFEGKAHEQHWFNKKET--------EPRKKAFLKAAGLVKKGYMLCGALAEVEPYNQ  814
             D   F++    ++ +   +T        E  ++ F+K+   + K++ LC++ +  +  N+
Sbjct  737   DYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELND  796

Query  815   EIAFYDAVRAILTKRDQNGTGSNERQIL------LKKLVNQAVYSEGVIDLFDLLEKPQP  868
             EIAF+ AV+A L K  Q    ++ R+        +++LV+Q+V +E+VID+++ L   QP
Sbjct  797   EIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQP  856

Query  869   QINLLSEEFLQTIKNSPTKNLWVSAVERYLASEIKAKSGANLTLQKDFEQRLKEALNQYH  928
             ++++LS++FL+ +     KN+ V  ++R L +++K+   +N T+ K F + L +++N+Y+
Sbjct  857   DLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYN  916

Query  929   NHNLSVVEILDELFKMSQDFQERlalgeklglkkeelaFYEALAQNQSARELMGDEVLSK  988
             ++++    +++EL+++++D+++    G+ LGL+ +E+AFY+AL  +++A+  M D  L  
Sbjct  917   SRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRA  976

Query  989   LAKEITDTLRRSVTIDWQYKEGVRAKMRILVKRALQRYKYPPDKQEEAVSYVIKQAEEIA  1048
             +A E+T T++ ++++DW  +++ +AKMR+ V+R L++Y YPPD Q  AV  V+ QAE +A
Sbjct  977   IAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMA  1036

Query  1049  ED  1050
              +
Sbjct  1037  SN  1038

162) Plabr_4424 in NC_015174


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  680 bits (2571),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 441/1060 (42%), Positives = 695/1060 (66%), Gaps = 62/1060 (5%)

Query  1     MTGRISEAAIENAALNQLESLNIE-----VIRRGDLTPSFSSKHDLGVVLTDAIHSSIEK  55
             M  +++E  +E+  L+ LESL+ +      I   +L+P    K D +VVL + ++ ++ K
Sbjct  1     MNFQFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPE--RKSDKDVVLHERLEKALRK  58

Query  56    FNPHLPEATIATVVVSLSRPPHSILVENSRWFHKLLIEGVPVE-YKDGETGEIRGGRARL  114
             +N+++    I   +  L+    + L+EN+  FH  LI+G+ +E Y D   G+      ++
Sbjct  59    INSDIHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDE--GQSIVEIVKI  116

Query  115   IDFENPANNDFLVVRQLAIQGPSGNKIRPDLVLYVNGLPLVVIELKDPANTTATLDMAID  174
             +DFE+P NNDFL V Q+++      K RPD+VL++NGLP+VVIELK+++N T  ++ + +
Sbjct  117   VDFEHPQNNDFLAVNQFTVVNGDYTK-RPDIVLFINGLPIVVIELKNSTNETVGVEDGYH  175

Query  175   QLVRYKEIAPDLFVPNLLLVVSDGLLTRVGSITSGRQRFTPWRPEKGGE------PTLEA  228
             QL  YK   P+LF  N +LV SDG+ T+ GS+T+  +RF  WR+  G        ++L+ 
Sbjct  176   QLETYKMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDV  235

Query  229   LIRELLTPAALLDYLRSCVAFEEDERGNIVKKVAGYHQFRAVRKARESVIDAVKTPDRQN  288
             LI  +L P +LLD +R  V F++D +G+I K +A+YHQ+ AV KA +  + A       +
Sbjct  236   LINGMLNPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLA------SS  289

Query  289   DEAAGKGGVVWHTQGSGKSLTMLMLAGTLVRAAEMANPTVVIVTDRNDLDDQLFHTFAM-  347
             +++ GKGGV+WHTQGSGKSLTM+ ++G L++   + NPT+VIVTDRNDLD+QL+ TF   
Sbjct  290   GQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKS  347

Query  348   ----GRELLRQEPVQAGSREHLKQLLDRASGGVIFTTIHKFAESH-----GMISERSNVV  398
                 G+ LLRQ P QA +R +LK LL   SGG++FTT++KF   +     + ++ER NV+
Sbjct  348   KGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVI  407

Query  399   VMADEAHRSQYGFIE-----------GGARWMREALPNATFVGFTGTPLMAGDKVTRHVF  447
             VMADEAHR+QYGF             G A+ +R+ALPNATFVGFTGTP+ + DK T+ VF
Sbjct  408   VMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVF  467

Query  448   GEYADVYDIHQAVADGATVPIYYEPRIVKLTIDeagarkaeatiaeaakadeNGEEMEEN  507
             G+Y DVYD+ QAVADG+TV IYYE+R++ L +    ++  +   A    ++++ E++ + 
Sbjct  468   GNYIDVYDMTQAVADGSTVKIYYESRVIPLNL----PQSLDLDEAYNDITEDQEEDVKQR  523

Query  508   IRI---PLEELYGAPERLERVAKFLVEHWEQRRSAMEGKAIVVTMSRGIAARLYDEIAKL  564
             ++     +E L GA  R+E +AK +++H E R+ AM GK+++VTMSR IA  LYDEI +L
Sbjct  524   LKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRL  583

Query  565   RPSWADDDDDKGMLKVIMTGTPADPEHIARHVRSKAQRKALGARFKDPADEFRLAIVVDM  624
             +P W  DDDDKG++KV+MTG+++DP  + RH+ +K +R  L  R KD  DE++L IV DM
Sbjct  584   KPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDM  643

Query  625   WLTGFDVPCAHTMYLDKPLAGHNLMQAIARVNRVYGAKPGGLIVDLIGLADPLADALATY  684
             WLTGFDVP  HTMY+DKP+ GHNLMQAIARVNRV+  KPGGLIVD +G+A++L +AL  Y
Sbjct  644   WLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEY  703

Query  685   AKATGDSDKPVKELQDEAIPAMQSAFEQLRDFFHGFDYSPALDADPRTVIRTYLGAVDHV  744
             +  +++++ ++    D A+  M   ++ ++D +  +DYS  ++++ ++  R Y  ++ + 
Sbjct  704   T-ESDQAQTAIDT--DKAVELMLLKYDVIQDMLYNLDYSK-FNSEKKSE-RYY--TISNT  756

Query  745   MDVNQTVGEETGWKRFRGMVKRLSTAFALAVPREETKEITPHLAFFQNVVRMIRKRLAED  804
             MD    +GE+  ++RF   V  L+ AFAL      ++E+  ++AFF + V+    +L + 
Sbjct  757   MDYVIGLGED-ERQRFIKTVTELGKAFALCATEPTAQELNDEIAFF-KAVKAGLVKLLQP  814

Query  805   AAPTSGTGASRDIDEAVRQVVGNAVDADDVIDLFAAAGLDTARLDILSDEFLNRVCALEQ  864
             +       ++ +++  + Q+V+++V ++DVID++ + GL+ + L ILSD+FL+ V +L Q
Sbjct  815   PKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQ  874

Query  865   QNLALETLRKLLTDQIKISERTNLVQAQKFREALENAMLSYTNKQISTAEMIARLLELAK  924
             +N+A+E L +LL +Q+K   +TN   +++F E L N++  Y ++ I T+ +I  L++LAK
Sbjct  875   KNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAK  934

Query  925   WVREAKQHGHDLGLSTEEIAFYDALAENGSAKEVMKSDKLRLMARELAEMVKKMPKLDWT  984
              +++ +Q+G++LGL+++EIAFYDAL  + +AK  M   KLR +A+EL+  VK    +DW+
Sbjct  935   DIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWS  994

Query  985   QRESVRADLRRKVRRLLAMYGYPPDLSEDATQLVLKQAEL  1024
             +R+S +A +R  VRRLL  YGYPPDL   A + V+ QAEL
Sbjct  995   KRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAEL  1034

163) Ethha_0476 in NC_014828


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  679 bits (2567),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 430/1042 (42%), Positives = 698/1042 (67%), Gaps = 54/1042 (5%)

Query  2     PYAEANFENAVMILLEELGYA-------KLYGPDVERDFHNPLYL-DALTGQLPRINPMA  53
              + E ++E+ V+  LE L+Y         + G   ER  ++ + L + L   L +IN+  
Sbjct  4     QFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDI  63

Query  54    DRQAVEEALHKLTHIEHGTLLQKNKRFMDWLQNGIEV-TYQKGGETKNELVRLIDYEHPE  112
             + + +E A+H LT      LL++N  F + L NGIE+  Y+  G++  E+V+++D+EHP+
Sbjct  64    HPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQ  123

Query  113   YNMFCAINQWTITEHE-TKRPDVAVFVNGLPLVVVELKTCMREDTDFSDGYRQIKNYMKE  171
              N F A+NQ T+ + + TKRPD+ +F+NGLP+VV+ELK    E  +  DGY+Q+  Y   
Sbjct  124   NNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  172   IPVLFQYNAFCIISDLIDSKVGTITSEFDRFVDWKTVNGDYEETQ-FARYDVLFRGMLEP  230
             IP LF +N   + SD I++K G++T+++DRF+ W++ +G+ E +  +A  DVL+ GML+P
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNP  243

Query  231   RRFLDILRYFILFSQDIPED-HKILAGYHQYFAVRKAIEST--RHAVETDGKGGVFWHTQ  287
             + +LD++RYF+LF +D   +  KILA+YHQY+AV KA++ +    + + DGKGGV+WHTQ
Sbjct  244   KTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQ  303

Query  288   GSGKSLSMVFYAALLQQALDSPTIIVITDRNDLDDQLYGQFSACKD-----FLRQTPEHA  342
             GSGKSL+MVF+++ L Q L++PT++++TDRNDLD+QLY+ F   K+     +LRQTP +A
Sbjct  304   GSGKSLTMVFFSGKLIQMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQA  363

Query  343   QSREHLKELLAGRRANGIFFTTMQKFEEAHE-----PLSERRNIIVMADEAHRSQYGLTE  397
             ++R +LK LL+   + GI FTTMQKFE  ++     +L+ER+N+IVMADEAHR+QYG+  
Sbjct  364   ETRKELKSLLSVE-SGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFNA  422

Query  398   R-VKKDGTLVVGAARVIRDSLPDATFIGFTGTPISSKDRDTRAVFGDYIDIYDMTQAVED  456
             +   K+  +  G A+ +RD+LP+ATF+GFTGTP++S D++T+ VFG+YID+YDMTQAV D
Sbjct  423   KYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVAD  482

Query  457   GATRPVYYESRVMNLGLKEDVLRQIDTTYELLAQNANEQDIERSKKELGNLEAILSAPET  516
             G+T  +YYESRV+ L L + +  ++D +Y+ ++++ +E+  +R K   + +EA+ +A   
Sbjct  483   GSTVKIYYESRVIPLNLPQSL--DLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPR  540

Query  517   IDTLCRDIIAHYEQNREHLLTGKAMIVAYSRSIAIDIYHKLLELRPGWQKK------VKV  570
             +++L +DII H+E  R++ + GK+MIV+ SR IA+D+Y+ ++ L+P W+        +KV
Sbjct  541   VEALAKDIIQHFE-TRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKV  599

Query  571   VMTSGNNDPEEWRNIIGNKSYKRELARKFKDNDDSLKIAIVVDMWLTGFDVPSLATMYVY  630
             VMT++++DP   +  IG K  +  L ++ KD +D L++ IV DMWLTGFDVPS+ TMY+ 
Sbjct  600   VMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYID  659

Query  631   KPMSGHNLMQAIARVNRVFRDKEGGLVVDYIGIARALKRAMNDYTVRDRSNYGNLDIAKT  690
             KPM GHNLMQAIARVNRVF+DK GGL+VDY+GIA +LK A+++YT  D+++   +D  K+
Sbjct  660   KPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQ-TAIDTDKA  718

Query  691   A---LPKFEEKLRVCGELLYGFDYSAFLLETSNDRQRADLIAGCINFVLGKNADTQKTFA  747
                 L K++    V  ++LY +DYS F  ++ +  +R   I+  +++V+G   D ++ F 
Sbjct  719   VELMLLKYD----VIQDMLYNLDYSKF--NSEKKSERYYTISNTMDYVIGLGEDERQRFI  772

Query  748   TEALLLKQARTLCQS-LLNREQRMESALFEAVRVALSRI-----SGTQKLSLKEINDRIN  801
                  L +A +LC +    +E   E A+F AV+ +L ++      G  + +  E++  IN
Sbjct  773   KTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEIN  832

Query  802   EMLQQSVHSEGVINLF---GEQSAEFSLFDPAFLEEISRMKQKNlaaellrkllaeQISA  858
             +++ QSV +E+VI+++   G + +++S++   FL ++  +KQKN+A ELL +LL  Q+ +
Sbjct  833   QLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKS  892

Query  859   YQHTNLVQAEKFSDRMQKLMNAYRNGQITNAEVIEELQKMAADIAKAHQTGASLGLSPEE  918
                TN   + +FS+ + + +N Y +  I  + VIEEL ++A DI + +Q G  LGL+++E
Sbjct  893   LMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDE  952

Query  919   LAFYDAITRPEAVKDFYTNDQLLHMTKELADTLRRSRTVDWQKKESARAQMRVMVKRLLR  978
             +AFYDA+   E+ K    + +L  ++ EL+ T++ + +VDW K++SA+A+MRV V+RLL+
Sbjct  953   IAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLK  1012

Query  979   KYKYPPDGMQDAIQTVLAQCEL  1000
             KY YPPD  + A++ V+ Q EL
Sbjct  1013  KYGYPPDLQKMAVEQVVEQAEL  1034

164) hsdR3 in NC_007146


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  677 bits (2558),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 448/1084 (42%), Positives = 733/1084 (68%), Gaps = 86/1084 (7%)

Query  3     NENDIEQLTLQRLQSLGWEYRYGKDLPVHEGEFSRGNLSGVVFIEQLREAVRKLNPQLPE  62
             NE+D+EQ+ L++L+SL+ +Y+ G+++++      R +  +VV+ E+L  A+RK+N+++  
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  63    SAVDSVVKSATKSDIGDLVVRNQTFYKLLRDGVRVE-YQDDGEQKIEMARLVDFEHGENN  121
               ++  +   T     +L+  N TF   L +G+ +E Y+D+G+  +E+ ++VDFEH +NN
Sbjct  66    RFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNN  125

Query  122   RFVAVNQLEIRSRKGGKRIPDIIGFVNGLPLVVFELKNPLRESADLLQAFNQFETYKDEI  181
              F+AVNQ+ + +    KR PDI+ F+NGLP+VV+ELKN+  E+ ++ ++++Q+ETYK  I
Sbjct  126   DFLAVNQFTVVNGDYTKR-PDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  182   AELFVYNQALIISDGIAARLGSLSADFQRFTPWKVVD-EKNKSVRLYFDDELQSLLNGLM  240
             ++LF +N+ L+ SDGI ++ GSL+A+++RF  W+  D E + S  L     L+ L+NG++
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSL---ASLDVLINGML  241

Query  241   QPEDLLDYIRYFVLFERDSVGKTIKKIAAYHQYYGVNEAVESTIFATSEQGDKRIGVMWH  300
             +P  LLD IRYFVLF+ D+ G   K +AAYHQYY+VN AV+ +++A+S QGD + GV+WH
Sbjct  242   NPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWH  301

Query  301   TQGSGKSISMLFYAGKLLAQPELKNPTIVVVTDRNDLDGQLFQTF-----SSGKDLIKQT  355
             TQGSGKS++M+F++GKL+    L+NPT+V+VTDRNDLD QL+ TF      SGK+L++QT
Sbjct  302   TQGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQT  359

Query  356   PQQVEDRDQLRQLLAQNEVGGVFFTTIQKFALNEEESRFPILNERNNIIVISDEAHRSQY  415
             P+Q E R +L+ LL+  E GG+ FTT+QKF  +++E+  + L ER+N+IV++DEAHR+QY
Sbjct  360   PKQAETRKELKSLLS-VESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQY  418

Query  416   GFTQKLHN--GKFQTGYARHLRDALPNASFIGFTGTPISLEDKDTQDVFGRYVSIYDLQD  473
             GF  K ++    ++ GYA+ LRDALPNA+F+GFTGTP++  DK+TQ VFG Y+ +YD+ +
Sbjct  419   GFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQ  478

Query  474   AVEDGATVPIVYEAR--QIKLAENANHDELFAEIDELLEGEENPKLRLREK------LLG  525
             AV DG+TV I YE+R   ++L+++ + DE + +I E  + EE+ K RL+ K      L G
Sbjct  479   AVADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITE--DQEEDVKQRLKSKWSRIEALAG  536

Query  526   SEARLHDLAIDFVQHFAKRNEVVDSKAMMVVSSRQICVDLYNQIIALHPEWHSDNINEGA  585
             + +R++ LA D++QHF  R++ + +K+M+V  SR+I VDLY++II L PEWHSD+ + G 
Sbjct  537   AKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGV  596

Query  586   IKIVMTGSASDASEMQKHVYSKQEKQTLERRFKDPNDPLKVVIVRDMWLTGFDAPCCNTM  645
             IK+VMTGS+SD++  Q+H+ +K+ +  LE+R KD ND L++VIVRDMWLTGFD P  +TM
Sbjct  597   IKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTM  656

Query  646   YLDKPMKGHNLMQAIARVNRVFRNKSRENGGLIVDYVGIADELEKATRQYTNSQGKGKLA  705
             Y+DKPMKGHNLMQAIARVNRVF++K+   GGLIVDYVGIA+ L  A ++YT+S+      
Sbjct  657   YIDKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTESD------  707

Query  706   DSVIDVFFKMKEHLEVIRSLFATPVEGKTFDVQAALEKDNPNDLLMAIRFAANHIL--SL  763
                                           + Q+A++ D++ +L++ +++   + +  +L
Sbjct  708   ------------------------------QAQTAIDTDKAVELML-LKYDVIQDMLYNL  736

Query  764   DQLSFDGKAHEQHWFNKKET--------EPRKKAFLKTAGLVKKGYMLCGTLAEVEPYNQ  815
             D   F++    ++ +   +T        E  ++ F+KT   + K++ LC+T +  +  N+
Sbjct  737   DYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELND  796

Query  816   EIAFYDAVRAILTK--------REQKGTGTNERQILLKKLVNQTVYSEGVIDLFDLLEKP  867
             EIAF+ AV+A L K        + +K  +  E +I  ++LV+Q+V +E+VID+++ L   
Sbjct  797   EIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEI--NQLVSQSVVTEDVIDVYQTLGLE  854

Query  868   QPQISLLSEEFLQTVKNSPTKNLWVSAMERYLASEIKVKSGTNLTLQKDFERRLKEALNQ  927
             QP++S+LS++FL+ V     KN+ V  ++R L +++K    TN T+ K F   L +++N+
Sbjct  855   QPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINK  914

Query  928   YHNHNLTVVEILDELFKMSQDFQERlalgkklgltkeelaFYEALSQNQSAKDLMGDEVL  987
             Y+++++    +++EL+++++D+++    G+ LGL  +E+AFY+AL  +++AK  M D  L
Sbjct  915   YNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKL  974

Query  988   SKLAKEITETLRKSVTIDWQYKEavrarirllvrralQKYKYPPDKQEEAVTYVIKQAEE  1047
               +A E+T T++ ++++DW  +++ +A++R+ VRR L+KY YPPD Q  AV  V+ QAE 
Sbjct  975   RAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAEL  1034

Query  1048  IAED  1051
             +A +
Sbjct  1035  MASN  1038

165) HMPREF0868_0494 in NC_013895


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  676 bits (2557),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 430/1047 (42%), Positives = 703/1047 (68%), Gaps = 53/1047 (5%)

Query  5     YTEADYESSIIELFQNMGYRYVYAPDLERDFHSP--------LYEEELLSALHRLNPKMP  56
             + E D E  ++E +++++Y Y  + ++     +P        + +E L  AL+++N+ + 
Sbjct  5     FNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIH  64

Query  57    EDAIADALFKLKNFENAELVQKNELFMDYLQHGIEVR-YFVDGEERFGLVYIVDYKNPDN  115
                I  A+  L    +++L+++N  F + L +GIE+  Y  +G+    +V IVD+ +P+N
Sbjct  65    PRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQN  124

Query  116   NSFVVANQWTFIENS-NKRPDVLLFLNGMPVVLVELKSPSREETDASEGYLQIRNYMQEI  174
             N F+  NQ T ++    KRPD++LF+NG+P+V++ELK+++ E  +  +GY Q+  Y   I
Sbjct  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  175   PSMFIYNCICVISDHLTSKAGTITSGEDRFMEWKTKDGSYENTQ-YAQFDTFFEGMFEKE  233
             P +F +N + V SD + +KAG++T+  DRFM W++KDG  E++   A +D +++GM++  
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPK  244

Query  234   RLLDIIKNFICFSNDGLNKF-KILAGYHQYFAVRKAIEST--KNATVTDGKGGVFWHTQG  290
              LLD+I+ F+ F +DG   + KILA+YHQY+AV KA++ +   ++   DGKGGV+WHTQG
Sbjct  245   TLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQG  304

Query  291   SGKSLSMVFYAHLLQEVLDSPTIVVITDRNDLDDQLYGQFAKCKD-----FLRQNPVHAT  345
             SGKSL+MVF++  L ++L++PT+V++TDRNDLD+QLY+ F K K+     +LRQ P +A 
Sbjct  305   SGKSLTMVFFSGKLIQMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAE  364

Query  346   CRKLTETSGKNDIGLKDWLEGRQANGIIFTTMQKFEESSE-----PLSKRRNIIVMADEA  400
              RK           LK  L + ++ GI+FTTMQKFE   +     +L+ R+N+IVMADEA
Sbjct  365   TRK----------ELKSLL-SVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEA  413

Query  401   HRSQYGLKEKIDAKTGEIKTGTARIIRDSLPNATYIGFTGTPIAAKDRNTREVFGDYIDI  460
             HR+QYG++ K D K   IK G A+ +RD+LPNAT++GFTGTP+A+ D+NT+ VFG+YID+
Sbjct  414   HRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDV  473

Query  461   YDMTQAVEDGATRPVYYESRVIKLKFDEPTLHLIDQEYDIMANNADPEVIEKSKKELSQM  520
             YDMTQAV DG+T  +YYESRVI L++ + +L+L D+ Y+ ++++ + +V ++ K   S++
Sbjct  474   YDMTQAVADGSTVKIYYESRVIPLNLPQ-SLDL-DEAYNDITEDQEEDVKQRLKSKWSRI  531

Query  521   DAVLGNDATIDSLTNDIISHYENYRENLLTGKAMIVAYSREIAMKIYKRILEVRPSWQKK  580
             +A+ G  + +++L++DII H+E  R++ + GK+MIV+ SR IA+ +Y  I+ ++P W+  
Sbjct  532   EALAGAKPRVEALAKDIIQHFET-RQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSD  590

Query  581   ------VKVVMTESNKDPEEWRAVIGNKHHRDELAKEFKDNNSEMKIAIVVDMWLTGFDV  634
                   +KVVMT S+ DP   +  IG K +R  L K  KD N E+++ IV DMWLTGFDV
Sbjct  591   DDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDV  650

Query  635   PSLATMYVYKPMQGYNLMQAIARVNRVFKDKEGGLIVDYVGIASALKQAMNDYTARDKKN  694
             PS+ TMY+ KPM+G NLMQAIARVNRVFKDK GGLIVDYVGIA +LK+A+++YT  D+ +
Sbjct  651   PSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQ  710

Query  695   YGDTDIAKVAYPKFLEKLSICRDLFHGYDYSKFTNGTDLERSKTITGAVNFIVSIDKERE  754
                 D  K     +L K  + +D++   DYSKF +    ER  TI+ +++++++++ + E
Sbjct  711   -TAIDTDKAVELMLL-KYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGED-E  767

Query  755   REDFIKEALLLHQALSLCSS-LVERGLRVEAAFFESVRVLVMRLINQGEDKKI--SLPEM  811
             R+ FIK    L +A++LC++    + L  E AFF +V+  +++L++   + K   + +E+
Sbjct  768   RQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEV  827

Query  812   NARINELLKSSIKSDGVINLFSDV---KEEFSLFDPKFLEEISKMKEKNLAVELLKKLIA  868
             +A IN+L+  S+ +++VI+++  +   + ++S++   FL ++  +K+KN+AVELL++L+ 
Sbjct  828   EAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLK  887

Query  869   EQIQIYRRSNVVKSEKFSEIIQGVMNRYLNGMLTNEEVIEELLKMAQQIQDAHKAGDELG  928
              Q++   ++N   S +FSE++   +N+Y +  +    VIEEL+++A++I++ ++ G+ELG
Sbjct  888   GQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELG  947

Query  929   LSEDELAFYDALTKPQAIKDFYENDELIAITKELTETLRKNRTIDWQKRDSARAKMRMMI  988
             L+ DE+AFYDAL   ++ K   E+  L AI+ ELT T++ N ++DW KRDSA+AKMR+ +
Sbjct  948   LNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAV  1007

Query  989   KRLLKQHRYPPEGMEDAVKTVMTQCEL  1015
             +RLLK+  YPP+    AV  V+ Q EL
Sbjct  1008  RRLLKKYGYPPDLQKMAVEQVVEQAEL  1034

166) BCAL0420 in NC_011000


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  675 bits (2551),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 432/1030 (42%), Positives = 668/1030 (65%), Gaps = 66/1030 (6%)

Query  36    ERPDISSGVLPRRLVERVQGINPSLPHSVSAEVALEASRPPHPTLVENNRWFHDLLINGA  95
             ER      VL  RL   ++ IN+ +          E +    P L+ENN  FH+ LING 
Sbjct  39    ERKSDKDVVLHERLEKALRKINSDIHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGI  98

Query  96    PVE-YKDAATGETRGGRARLIDFDNPANNDFLVVRQLTVAGANGKTIRPDLVLYVNGLPL  154
              +E Y D   G++     +++DF++P NNDFL V Q+TV  ++  T RPD+VL++NGLP+
Sbjct  99    EIEDYDDE--GQSIVEIVKIVDFEHPQNNDFLAVNQFTVVNGD-YTKRPDIVLFINGLPI  155

Query  155   VVIELKDPANTSATLEVAIDQLGRYKTVAPDLFVPSLLLVASDGLLTRVGSITSGLQRFT  214
             VVIELK+++N +  +E + +QL  YK   P+LF  + +LV+SDG+ T+ GS+T+  +RF 
Sbjct  156   VVIELKNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFM  215

Query  215   PWRPAHGGE------PTLEALIRELLNPSALLDYLLSCVAFEEDERGNIVKKVAGYHQFR  268
              WR+ +G        ++L+ LI  +LNP +LLD +   V F++D +G+I K +A+YHQ+ 
Sbjct  216   TWRSKDGETESSSSLASLDVLINGMLNPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYY  275

Query  269   AVRKARASVISAIKTSARSDDVTAGKGGVVWHTQGSGKSLTMLMLAGTLVRAAEMANPTI  328
             AV KA    +  + +S+++D    GKGGV+WHTQGSGKSLTM+ ++G L++   + NPT+
Sbjct  276   AVNKAVDRAL--LASSGQGD----GKGGVIWHTQGSGKSLTMVFFSGKLIQM--LNNPTL  327

Query  329   VIVTDRNDLDDQLFETFAM-----GRALLRQDPMQAEGREHLRQLLDRASGGVVFTTIHK  383
             VIVTDRNDLD+QL+ TF       G++LLRQ P QAE R +L+ LL   SGG+VFTT++K
Sbjct  328   VIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQK  387

Query  384   FTEAH-----GMISERANIVVMADEAHRSQYGFVE-----------GGARWMREALPNAT  427
             F   +     + ++ER N++VMADEAHR+QYGF             G A+ +R+ALPNAT
Sbjct  388   FEPEQNETIMAALTERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNAT  447

Query  428   FVGFTGTPLMAGDRVTQNVFGEYADVYDVRQAVADGATVPIYYEPRIVKLTIDETGAKEA  487
             FVGFTGTP+ + D+ TQ VFG+Y DVYD+ QAVADG+TV IYYE+R++ L + ++   + 
Sbjct  448   FVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNLPQSLDLDE  507

Query  488   EAKIAQYATRDEYGQETPENVRISL-------EELYGAPERLQRVAKFVVEHWEERRAAM  540
                   Y   ++  ++  E+V+  L       E L GA  R++ +AK +++H E R+ AM
Sbjct  508   A-----Y---NDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAM  559

Query  541   EGKAMLVTMSRDIAARLYDEICKLRPAWHDEDDAQGAIKVVMTGGPNDSEHMMRHSRSKA  600
              GK+M+VTMSR IA  LYDEI +L+P WH +DD +G IKVVMTG+++D+    RH  +K 
Sbjct  560   KGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKK  619

Query  601   QRKSLADRFKDPTDDFRLAVVVDMWLTGFDVPCAHTMYLDKPLAGHNLMQAIARVNRVYG  660
             +R  L  R KD  D+++L +V DMWLTGFDVP  HTMY+DKP+ GHNLMQAIARVNRV+ 
Sbjct  620   RRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFK  679

Query  661   EKPGGLIVDMIGLADPLADALATYASATGETDKPVKELQDEAIPAMQSAFEQLRSFFHDF  720
             +KPGGLIVD +G+A++L +AL  Y + +++++ ++    D A+  M   ++ ++  + ++
Sbjct  680   DKPGGLIVDYVGIAESLKEALKEY-TESDQAQTAIDT--DKAVELMLLKYDVIQDMLYNL  736

Query  721   NYAEALDAIPSRVLRVYLGAIDHVLDVKHTVGDETGWQRFGGMVKRLATAFALAVPREET  780
             +Y+        +  R Y  +I + +D    +G++  +QRF   V  L+ AFAL      +
Sbjct  737   DYSKF--NSEKKSERYY--TISNTMDYVIGLGED-ERQRFIKTVTELGKAFALCATEPTA  791

Query  781   RDITPHLAFFQRVAAMIRKRLTDERGPTESRSDGSP-DIDAAVRQVIGGAVDAGEVIDLF  839
             +++  ++AFF+ V A + K L   + P E+++  +P +++A + Q+++ +V + +VID++
Sbjct  792   QELNDEIAFFKAVKAGLVKLL---QPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVY  848

Query  840   AAAGLDAARLDILSDDFLERVSALEQKNLALETLRKLLADQIKLSERSNLVQAQKFREAL  899
              + GL+ + L ILSDDFL  V +L QKN+A+E L +LL +Q+K   ++N   +++F E L
Sbjct  849   QTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEML  908

Query  900   ERAMLGYTNKQITTAQMITQLLALAKWVREAKLHGQDLGLSDEEAAFYDALTENGSAKEA  959
               ++  Y ++ I T+++I +L+ LAK +++ + +G++LGL+ +E AFYDAL  + +AK A
Sbjct  909   GNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKA  968

Query  960   MKSDQLRLMARELAEMVKKMPRLDWTQRESVRADLRRKVRRLLAMYGYPPDLSEEATQLV  1019
             M   +LR +A+EL+  VK    +DW++R+S +A +R  VRRLL  YGYPPDL   A + V
Sbjct  969   MEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQV  1028

Query  1020  LRQAELSTEN  1029
             + QAEL + N
Sbjct  1029  VEQAELMASN  1038

167) WQG_11930 in NC_020515


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  673 bits (2545),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 438/1064 (42%), Positives = 718/1064 (68%), Gaps = 54/1064 (5%)

Query  4     NENTIEQSAIATLQSLGWDYTYGKTI-LAGLEHEWRERAAEVILKPLLAQAIAKFNPNLP  62
             NE+ +EQ  +  L+SL+ DY  G+ I ++GL  E++    +V+L   L +A+ K+N+++ 
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKS-DKDVVLHERLEKALRKINSDIH  64

Query  63    AYEVENVVAQVCRAESGDLAERNRQAYDWLRNGVKI-TYQLDGEQVSEVVQLIDFQRPEN  121
             +  +E+ + ++    S +L E N    + L NG+ I  Y+ +G+ + E+V+++DF++P+N
Sbjct  65    PRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQN  124

Query  122   NDFRIVNQLDIGGKKGKRIPDLIGFVNGLPLVVFELKNPLKENADIGKAFAQLQTYKDEI  181
             NDF  VNQ+ +      + PD++ F+NGLP+VV+ELKN+ +E  ++  ++ QL+TYK  I
Sbjct  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  182   SDLFVFNQALVISDGIVARIGSLTADLDRFTPWRVVDEKNQSKRIVFEDELTALLQGVMT  241
             ++LF FN+ LV SDGI ++ GSLTA+ DRF  WR  D   +S   +    L  L++G++ 
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSL--ASLDVLINGMLN  242

Query  242   PQNLLDYVQNFVVFERDGKNRLIKKIGAYHQFYGVNEAVDCTLLAATG--NRKIGVFWHT  299
             P+ LLD ++ FV+F+ DGK ++ K ++AYHQ+Y+VN AVD +LLA++G  + K GV+WHT
Sbjct  243   PKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHT  302

Query  300   QGSGKSLSMLFYAGKVLSQSSLKNPTLVLVTDRNDLDGQLYATFC-----GGEALLKQTP  354
             QGSGKSL+M+F++GK++    L+NPTLV+VTDRNDLD QLY+TF      +G +LL+QTP
Sbjct  303   QGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  355   IQADGRDELRSALASRSAGGVIFTTIQKFGLMEGELAHPVLNERENIIVITDEAHRSQYG  414
              QA+ R EL+S L+   +GG++FTT+QKF   + E   + L ER N+IV++DEAHR+QYG
Sbjct  361   KQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYG  419

Query  415   FNQKIDHKGQ-YKEGYAKHLRSALPHASFIGFTGTPIALDDRDTQEVFGKYVSIYDFEDA  473
             FN K D+KG+  K GYAK LR ALP+A+F+GFTGTP+A  D++TQ VFG+Y+ +YD  +A
Sbjct  420   FNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQA  479

Query  474   VEDGATVPIIYEPRQISLGESREFAKVMEEA-QQLIDDDENSDNFRLREK------LHSV  526
             V DG+TV I YE+R I+L  ++ +   ++EA +++ +D+E+  + RL+ K      L + 
Sbjct  480   VADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGA  537

Query  527   DSRLQKMAEDIIAHYDERTKQQDGKAMIVVMSRAICVKLYDKITVLRPEWHSNDVHQGSI  586
              +R++ +A DII H++ R +   GK+MIV MSR I V LYD I  L+PEWHS+D ++G I
Sbjct  538   KPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVI  597

Query  587   KIVMTSNASDPAEWQVHNQDKK---TLEKRFKDPDDPLKIVIVRDMWLTGFDAPCCNTMY  643
             K+VMT+++SDP+  Q H   KK    LEKR KD +D L++VIVRDMWLTGFD P  +TMY
Sbjct  598   KVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMY  657

Query  644   IDKPMSGHNLMQAIARVNRVFRNKSRENGGLIVDYVGLTDELEKAMKQYTNAGGKEKPVR  703
             IDKPM GHNLMQAIARVNRVF++K+   GGLIVDYVG+++ L  A+K+YT+++  + ++ 
Sbjct  658   IDKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTESDQAQTAI-  713

Query  704   DISAVLEKMVEHITVIRGQFATPIDGQAVDIAKMLQISEPPKLLNTILQAANHILALDRI  763
             D    +E M+    VI++ +        +D +K      + +   TI ++ + +++L+  
Sbjct  714   DTDKAVELMLLKYDVIQDMLYN------LDYSKFNSEKKSERYY-TISNTMDYVIGLGED  766

Query  764   QPADNTAKDKTPRKNAFLQSVRLAKKGYALCGALKAVEPYKQELAFYDAVRATIIKNSTA  823
             +            ++ F+++V    K++ALC++  + +  ++E+AF+ AV+A ++K   +
Sbjct  767   E------------RQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQP  814

Query  824   PRNSSSENDRL---LQLTALMNRAVQSDGVVDLFDLLKKDRPNINLLSDEFLETVKNSPT  880
             P+++ + +       ++  L++++V +++V+D+++ L  ++P++++LSD+FL  V     
Sbjct  815   PKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQ  874

Query  881   KDLWLSAMERYLAAQLREQSGANLATKKAFEQKLKEAMNQYHNHNLSVleileelialak  940
             K++ +  ++R L +Q++    +N +  K F + L +++N+Y+++++    ++EELI LAK
Sbjct  875   KNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAK  934

Query  941   efeaRQKRGEALGLNPAEMAFYDALARNESAVREMGDEVLMNLAKDITDKLRKSVTVDWQ  1000
             ++   Q+RG+ LGLN+ E+AFYDAL  +E+A + M D  L  +A ++T  ++ +++VDW 
Sbjct  935   DIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWS  994

Query  1001  YKDSVRAKMRTLIRIALRSYKYPPDLQAEAIEFVLQQAEEIAGE  1044
              +DS +AKMR  +R  L+ Y YPPDLQ  A+E V++QAE +A++
Sbjct  995   KRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

168) Mpet_1680 in NC_014507


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  672 bits (2540),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 440/1038 (43%), Positives = 697/1038 (68%), Gaps = 47/1038 (4%)

Query  3     FTEADFENSVIEIFRDNLGYTYRYGPEVD--------RDYHNPLYEEQLLSSLETINPKL  54
             F E D+E+ V+E   ++L+Y Y+ G E+         +   + + +E+L  +L  IN+ +
Sbjct  5     FNEDDLEQVVLE-WLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDI  63

Query  55    PQTAIEEAVYKLKNIGTGTLVQKNFIFTDYLQNGIPVKYYDGKEER-SAIVYLVDYQNPA  113
                 IE A+  L    +  L+++N+ F + L NGI +  YD+  +    IV +VD+++P 
Sbjct  64    HPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQ  123

Query  114   NNTFHVINQWTVVD-EVEKRPDIVIFVNGLPLVVVELKSPSREETDVSEAYRQLRNYLHD  172
             NN F  +NQ TVV+ +  KRPDIV+F+NGLP+VV+ELK+++ E  +V ++Y+QL  Y   
Sbjct  124   NNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  173   IPSLFVYNAFCVMSDHATSKAGTITADEDRYMEWKTVDGSYENTQ-YAAFDVLFEGIFEK  231
             IP LF +N   V SD   +KAG++TA+ DR+M W++ DG  E++   A++DVL++G+++ 
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNP  243

Query  232   ERFLDILKNFICFSKETPED-KKILGAYHQYFAVKKALQST--KEATLTDGKGGVFWHTQ  288
               +LD+++ F+ F  +   +  KIL+AYHQY+AV+KA++ +    +   DGKGGV+WHTQ
Sbjct  244   KTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQ  303

Query  289   GSGKSLSMVFYAKQLREVLDSPTIVVITDRNDLDGQLFGQFSACED-----YLRQTPVQA  343
             GSGKSL+MVF++ +L ++L++PT+V++TDRNDLD QL++ F    +      LRQTP QA
Sbjct  304   GSGKSLTMVFFSGKLIQMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQA  363

Query  344   ESRADLKMLILNREVNGIIFTTMQKFEEYD-----APLSKRRNIVVIADEAHRSQYGFEE  398
             E+R +LK L L+ E  GI+FTTMQKFE  +     A+L+ R+N++V+ADEAHR+QYGF+ 
Sbjct  364   ETRKELKSL-LSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFNA  422

Query  399   KVHPKTGKIRIGSARKVRDSLPNATYIGFTGTPVSLADRNTREIFGDYIDIYDMTQSVED  458
             K + K   I+ G A+ +RD+LPNAT++GFTGTPV+ +D+NT+ +FG+YID+YDMTQ+V D
Sbjct  423   KYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVAD  482

Query  459   NATVPIYYESRVVALKLDESILHEIDDEYDRVAEEAEEYIVEKSKHELGRLESILGAPET  518
              +TV IYYESRV++L+L +S+  ++D+ Y+ ++E+ EE + ++ K   +R+E++ GA   
Sbjct  483   GSTVKIYYESRVIPLNLPQSL--DLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPR  540

Query  519   ITTLCEDIIKHYETYRQYEQTGKAMIVAYSRPIAMKVYRRILELRPEW------KEKLGV  572
             + +L  DII+H+ET RQ    GK+MIV+ SR IA+ +Y  I+ L+PEW      K  + V
Sbjct  541   VEALAKDIIQHFET-RQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKV  599

Query  573   VMTSDNNDPEDWREVIGNKKHKENMAGKFKDNNDPLKIAIVVDMWLTGFDVPSLSTMYVY  632
             VMT+ ++DP   +  IG KK++  +  + KD ND L++ IV DMWLTGFDVPS+ TMY+ 
Sbjct  600   VMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYID  659

Query  633   KPMTGHNLMQAIARVNRVYKDKQGGLIVDYVGIAGALRKAMKDYTGRDRKNYGNPDIGKT  692
             KPM GHNLMQAIARVNRV+KDK GGLIVDYVGIA +L+ A+K+YT  D+ +    D +K+
Sbjct  660   KPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQ-TAIDTDKA  718

Query  693   AYPKFREKLEVCRDLFHGFDYSVFETGTDLERAKLITGGVNYISHPSKEEKRNAFVRESL  752
                 +  K +V +D++  +DYS F++    ER   I+  ++Y+   + +E R+ F++   
Sbjct  719   VELMLL-KYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDE-RQRFIKTVT  776

Query  753   LLRHAMSLCRSLLDQNE-RFEAAYFEAVRTLLTRI-----EGKGKLSLREINNRINELLK  806
              L  A +LC +    +E   E A+F AV++ L ++     EGK + +  E++  IN+L+ 
Sbjct  777   ELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVS  836

Query  807   QSIRSEGVINLFSDV---KEKYSLFDPAFLSEIARMKEKNLAVELLKKLLMEQIRVYSRT  863
             QS+ +E+VI+++  +   +   S++   FL ++  +K+KN+AVELL++LL  Q++   +T
Sbjct  837   QSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKT  896

Query  864   NVVKSAKFSELLAEAMNSYINGMLTNEQVIEELLKIAKDMAEAHKEGEELGLNPEEMAFY  923
             N   S +FSE+L++++N Y +  +   +VIEEL+++AKD+ + ++ G+ELGLN++E+AFY
Sbjct  897   NATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFY  956

Query  924   DALTKPEAVKDFYENDELVAITKELTELLRKNKTIDWQKKETARAGMRRLVKRLLKQHKY  983
             DAL   E+ K   E+  L AI+ ELT  ++ N ++DW K+++A+A MR  V+RLLK+  Y
Sbjct  957   DALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGY  1016

Query  984   PPEGMEDAVSTVLAQCEM  1001
             PP+    AV  V+ Q E+
Sbjct  1017  PPDLQKMAVEQVVEQAEL  1034

169) GYMC52_2377 in NC_014915


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  672 bits (2541),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 428/1043 (42%), Positives = 707/1043 (68%), Gaps = 59/1043 (5%)

Query  2     FTEEQLEQAVIEYFQELGYPYMPAkelkrdkkdvllldrlee--------ALVKLNPEVP  53
             F E++LEQ V+E ++ L+Y Y  ++E+             +         AL K+N+++ 
Sbjct  5     FNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIH  64

Query  54    VEIIREVMRKIHYFETNDVLTNNKMFHKYLTEAVVVPELVN-GETVYHHVRLIDWETPEN  112
               +I   ++ +    + ++L NN  FH  L +++ + +  + G+++ + V+++D E P+N
Sbjct  65    PRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQN  124

Query  113   NDFLVVNQLEVIEKGQEKIPDIVLYVNGLPLVIAELKSTSREEVDIEDAYKQLKNYMNVH  172
             NDFL VNQ+ V++ +  K PDIVL++NGLP+V+ ELK+++ E V++ED+Y QL  Y +++
Sbjct  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY-KMR  183

Query  173   IPSLFYYNAFLVISDGVQARAGTITAPLDRFMAWKKINIEDDVIEN-RELETLIFGLFEP  231
             IP LF +N  LV SDG++++AG++TA  DRFM+W+  + E +   +   L+ LI G+++P
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNP  243

Query  232   KRFLDVIKNFTLFANEAK-----IMAAYHQYYGMKKAVASTI--QAIHTDKRAGVIWHTQ  284
             K +LD+I+ F LF +++K     I+AAYHQYY+++KAV  ++   + + D ++GVIWHTQ
Sbjct  244   KTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQ  303

Query  285   GSGKSYSMVFLAGNLVRQEQLKNPTIVVITDRNDLDGQLFETFC-----GASEFLRQTPL  339
             GSGKS +MVF++G+L+  + L+NPT+V++TDRNDLD QL+ TF      ++  +LRQTP 
Sbjct  304   GSGKSLTMVFFSGKLI--QMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPK  361

Query  340   QAETRSHLKELLEHRQTGGIVFSTIQKFEEET-----GLLSERENIIVMVDEAHRSQYGV  394
             QAETR +LK LL   ++GGIVF+T+QKFE E      + L+ER N+IVM DEAHR+QYG 
Sbjct  362   QAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGF  420

Query  395   DPKYDIETGEQKYGYAKYLREALPNATYIAFTGTPIETTDRSTTGLFGDVIDVYDMTQAV  454
             ++KYD      KYGYAKYLR+ALPNAT+++FTGTP+ +TD++T  +FG+ IDVYDMTQAV
Sbjct  421   NAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV  480

Query  455   EDGATVKIYYESRLAKVKLDEKKMNEIDQEYWRMQVHEGVGDYIIEQSQKSLSRMEQIIG  514
              DG+TVKIYYESR+  ++L +    ++D+ Y   ++ E+  + + ++ +   SR+E + G
Sbjct  481   ADGSTVKIYYESRVIPLNLPQS--LDLDEAY--NDITEDQEEDVKQRLKSKWSRIEALAG  536

Query  515   DQDRIREVVTDIIHHYEEREHLVKGKAMIIAYSRNTAFAMYKEIMRQRPDW------KDK  568
              + R+  +  DII+H+E R++ +KGK+MI++ SR  A  +Y EI+R +P+W      K+ 
Sbjct  537   AKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGV  596

Query  569   VKIVMTENNQDPEELAKLVGNKQTRKQREKEFKDVDHPFKIVIVVDMWLTGFDVPALDTM  628
             +K+VMT ++ DP  + + +G K+ R   EK  KDV++ +++VIV DMWLTGFDVP+++TM
Sbjct  597   IKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTM  656

Query  629   YIDKPMKAHNLMQAIARVNRVYPGKTGGLIVDYIGLKKNLMEALQTYTKRDQDKVQENTQ  688
             YIDKPMK+HNLMQAIARVNRV+ +K GGLIVDY+G+  +L EAL+ YT  DQ +   +T+
Sbjct  657   YIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTD  716

Query  689   ARDIALNIL--EVLRNMFHSFDYRAFFGDSDKKRYEVIRDGAEFV---QQTEKRKLLFMT  743
              + + L +L  +V+++M+ ++DY  F ++    RY  I +  ++V    + E+++  F+ 
Sbjct  717   -KAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQR--FIK  773

Query  744   ETKKLKDVYKIC-TGLLSKEQKEEISYFIAVRSFIMK---SSRTGTP--DLKEVNERIAK  797
                 L   + +C T   ++E ++EI++F AV++ ++K   +++ G       EV+  I +
Sbjct  774   TVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQ  833

Query  798   MLEEAILEDEVMVLTQAVSSESFDL--LNEENIKKLRALPQKNIASTILMRVLKQKLQDV  855
             ++ ++++ ++V+ + Q+++ E  DL  L+++ +K + +L QKN+A  +L R+LK +++ +
Sbjct  834   LVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSL  893

Query  856   KKTNMTVSQTFSKRFEKILEKYNNRNDYTDVYEVfeellkfkeelQAAIEEGKQLGLTEE  915
              KTN TVS+ FS  + + ++KYN+R+   +   V+EEL+++  +++   + G++LGL  +
Sbjct  894   MKTNATVSKRFSEMLGNSINKYNSRS--IETSKVIEELIQLAKDIKQEQQRGNELGLNSD  951

Query  916   EKAFFDVLGSDPDIKKLMEDEVLIQIAKDLAKTVKENRTHDWDKKAQAQARMRLEIKKVL  975
             E AF+D L S+   KK MED  L  IA +L+KTVKEN + DW K+  A+A+MR+ ++++L
Sbjct  952   EIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLL  1011

Query  976   RKYDYPPNKQPKAVEDVLEQAKL  998
             +KY+YPP+ Q  AVE+V+EQA L
Sbjct  1012  KKYGYPPDLQKMAVEQVVEQAEL  1034

170) GYMC61_0288 in NC_013411


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  672 bits (2541),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 428/1043 (42%), Positives = 707/1043 (68%), Gaps = 59/1043 (5%)

Query  2     FTEEQLEQAVIEYFQELGYPYMPAkelkrdkkdvllldrlee--------ALVKLNPEVP  53
             F E++LEQ V+E ++ L+Y Y  ++E+             +         AL K+N+++ 
Sbjct  5     FNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIH  64

Query  54    VEIIREVMRKIHYFETNDVLTNNKMFHKYLTEAVVVPELVN-GETVYHHVRLIDWETPEN  112
               +I   ++ +    + ++L NN  FH  L +++ + +  + G+++ + V+++D E P+N
Sbjct  65    PRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQN  124

Query  113   NDFLVVNQLEVIEKGQEKIPDIVLYVNGLPLVIAELKSTSREEVDIEDAYKQLKNYMNVH  172
             NDFL VNQ+ V++ +  K PDIVL++NGLP+V+ ELK+++ E V++ED+Y QL  Y +++
Sbjct  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY-KMR  183

Query  173   IPSLFYYNAFLVISDGVQARAGTITAPLDRFMAWKKINIEDDVIEN-RELETLIFGLFEP  231
             IP LF +N  LV SDG++++AG++TA  DRFM+W+  + E +   +   L+ LI G+++P
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNP  243

Query  232   KRFLDVIKNFTLFANEAK-----IMAAYHQYYGMKKAVASTI--QAIHTDKRAGVIWHTQ  284
             K +LD+I+ F LF +++K     I+AAYHQYY+++KAV  ++   + + D ++GVIWHTQ
Sbjct  244   KTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQ  303

Query  285   GSGKSYSMVFLAGNLVRQEQLKNPTIVVITDRNDLDGQLFETFC-----GASEFLRQTPL  339
             GSGKS +MVF++G+L+  + L+NPT+V++TDRNDLD QL+ TF      ++  +LRQTP 
Sbjct  304   GSGKSLTMVFFSGKLI--QMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPK  361

Query  340   QAETRSHLKELLEHRQTGGIVFSTIQKFEEET-----GLLSERENIIVMVDEAHRSQYGV  394
             QAETR +LK LL   ++GGIVF+T+QKFE E      + L+ER N+IVM DEAHR+QYG 
Sbjct  362   QAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGF  420

Query  395   DPKYDIETGEQKYGYAKYLREALPNATYIAFTGTPIETTDRSTTGLFGDVIDVYDMTQAV  454
             ++KYD      KYGYAKYLR+ALPNAT+++FTGTP+ +TD++T  +FG+ IDVYDMTQAV
Sbjct  421   NAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV  480

Query  455   EDGATVKIYYESRLAKVKLDEKKMNEIDQEYWRMQVHEGVGDYIIEQSQKSLSRMEQIIG  514
              DG+TVKIYYESR+  ++L +    ++D+ Y   ++ E+  + + ++ +   SR+E + G
Sbjct  481   ADGSTVKIYYESRVIPLNLPQS--LDLDEAY--NDITEDQEEDVKQRLKSKWSRIEALAG  536

Query  515   DQDRIREVVTDIIHHYEEREHLVKGKAMIIAYSRNTAFAMYKEIMRQRPDW------KDK  568
              + R+  +  DII+H+E R++ +KGK+MI++ SR  A  +Y EI+R +P+W      K+ 
Sbjct  537   AKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGV  596

Query  569   VKIVMTENNQDPEELAKLVGNKQTRKQREKEFKDVDHPFKIVIVVDMWLTGFDVPALDTM  628
             +K+VMT ++ DP  + + +G K+ R   EK  KDV++ +++VIV DMWLTGFDVP+++TM
Sbjct  597   IKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTM  656

Query  629   YIDKPMKAHNLMQAIARVNRVYPGKTGGLIVDYIGLKKNLMEALQTYTKRDQDKVQENTQ  688
             YIDKPMK+HNLMQAIARVNRV+ +K GGLIVDY+G+  +L EAL+ YT  DQ +   +T+
Sbjct  657   YIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTD  716

Query  689   ARDIALNIL--EVLRNMFHSFDYRAFFGDSDKKRYEVIRDGAEFV---QQTEKRKLLFMT  743
              + + L +L  +V+++M+ ++DY  F ++    RY  I +  ++V    + E+++  F+ 
Sbjct  717   -KAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQR--FIK  773

Query  744   ETKKLKDVYKIC-TGLLSKEQKEEISYFIAVRSFIMK---SSRTGTP--DLKEVNERIAK  797
                 L   + +C T   ++E ++EI++F AV++ ++K   +++ G       EV+  I +
Sbjct  774   TVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQ  833

Query  798   MLEEAILEDEVMVLTQAVSSESFDL--LNEENIKKLRALPQKNIASTILMRVLKQKLQDV  855
             ++ ++++ ++V+ + Q+++ E  DL  L+++ +K + +L QKN+A  +L R+LK +++ +
Sbjct  834   LVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSL  893

Query  856   KKTNMTVSQTFSKRFEKILEKYNNRNDYTDVYEVfeellkfkeelQAAIEEGKQLGLTEE  915
              KTN TVS+ FS  + + ++KYN+R+   +   V+EEL+++  +++   + G++LGL  +
Sbjct  894   MKTNATVSKRFSEMLGNSINKYNSRS--IETSKVIEELIQLAKDIKQEQQRGNELGLNSD  951

Query  916   EKAFFDVLGSDPDIKKLMEDEVLIQIAKDLAKTVKENRTHDWDKKAQAQARMRLEIKKVL  975
             E AF+D L S+   KK MED  L  IA +L+KTVKEN + DW K+  A+A+MR+ ++++L
Sbjct  952   EIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLL  1011

Query  976   RKYDYPPNKQPKAVEDVLEQAKL  998
             +KY+YPP+ Q  AVE+V+EQA L
Sbjct  1012  KKYGYPPDLQKMAVEQVVEQAEL  1034

171) F382_03180 in NC_021743


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  672 bits (2540),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 433/1064 (41%), Positives = 715/1064 (68%), Gaps = 54/1064 (5%)

Query  5     NENTIEQSAIATLQSLGWDYTYGKKI-LAGLEHEWRERTAEVILKPLLAQAIAKFNPNLP  63
             NE+ +EQ  +  L+SL+ DY  G+ I ++GL  E++    +V+L   L +A+ K+N+++ 
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKS-DKDVVLHERLEKALRKINSDIH  64

Query  64    ACEVENVVAQVCRADSGDLAERNRQAYDWLRNGVKI-TYQLYGEQVSDVVQLIDFQRPEN  122
             +  +E+ + ++    S +L E N    + L NG+ I  Y+  G+ + ++V+++DF++P+N
Sbjct  65    PRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQN  124

Query  123   NDFRIVNQLDISGKKGKRIPDLIGFVNGLPLVVFELKNPLKENADIGKAFAQLQTYKDEI  182
             NDF  VNQ+ +      + PD++ F+NGLP+VV+ELKN+ +E  ++  ++ QL+TYK  I
Sbjct  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  183   SDLFVFNQALVISDGIVARIGSLTADFDRFTPWRVVDEKNQSKRIVFEDELTALLQGVMT  242
             ++LF FN+ LV SDGI ++ GSLTA++DRF  WR  D   +S   +    L  L++G++ 
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSL--ASLDVLINGMLN  242

Query  243   PKNLLDYVQNFVVFERDGKNRLIKKIGAYHQFYGVNEAVDCTLLAAT--GNRKIGVFWHT  300
             PK LLD ++ FV+F+ DGK ++ K ++AYHQ+Y+VN AVD +LLA++  G+ K GV+WHT
Sbjct  243   PKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHT  302

Query  301   QGSGKSLSMLFYAGKVLSQSSLKNPTLVLVTDRNDLDGQLYATFC-----GGEALLKQTP  355
             QGSGKSL+M+F++GK++    L+NPTLV+VTDRNDLD QLY+TF      +G +LL+QTP
Sbjct  303   QGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  356   IQADGRDELRSALASRSAGGVIFTTIQKFGLMEGELAHPVLNERENIIVITDEAHRSQYG  415
              QA+ R EL+S L+   +GG++FTT+QKF   + E   + L ER N+IV++DEAHR+QYG
Sbjct  361   KQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYG  419

Query  416   FSQKINHKGE-YREGYAKHLRSALPNASFIGFTGTPIELDDKDTQEVFGKYVSIYDFEDA  474
             F+ K ++KGE  + GYAK LR ALPNA+F+GFTGTP+   DK+TQ VFG+Y+ +YD  +A
Sbjct  420   FNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQA  479

Query  475   VEDGATVPIIYEPRQISLGESGEFSKVMEEA-QQLIDDDENSYNFRLREK------LHSV  527
             V DG+TV I YE+R I+L  +  +   ++EA +++ +D+E+  + RL+ K      L + 
Sbjct  480   VADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGA  537

Query  528   DSRLQKMAEDIIAHYDERTKQQDGKAMVVVMSRAICVKLYEKITALRPEWHSNDVLQGSI  587
              +R++ +A DII H++ R +   GK+M+V MSR I V LY+ I  L+PEWHS+D  +G I
Sbjct  538   KPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVI  597

Query  588   KIVMTSNASDPAEWQKHNQDKK---TLEKRFKDPDDPLNIVIVRDMWLTGFDAPCCNTMY  644
             K+VMT+++SDP+  Q+H   KK    LEKR KD +D L++VIVRDMWLTGFD P  +TMY
Sbjct  598   KVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMY  657

Query  645   IDKPMSGHNLMQAIARVNRVFRNKSRENGGLIVDYVGLTDELEKAMKQYTNAGGKEKPVR  704
             IDKPM GHNLMQAIARVNRVF++K+   GGLIVDYVG+++ L  A+K+YT+++  + ++ 
Sbjct  658   IDKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTESDQAQTAI-  713

Query  705   DISAVLEKMVEHITVIRGQFATPIDGQAVDIAKMLQISEPPKLLNAILTSANHILALDRI  764
             D    +E M+    VI++ +        +D +K      + +   +I  + + +++L+  
Sbjct  714   DTDKAVELMLLKYDVIQDMLYN------LDYSKFNSEKKSERYY-TISNTMDYVIGLGED  766

Query  765   QPPDNTAKDKTPRKNAFLQSVRLAKKGYALCGALKAVEPYKQELAFYDAVRATIIKNSTA  824
             +            ++ F+++V    K++ALC++  + +  ++E+AF+ AV+A ++K   +
Sbjct  767   E------------RQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQP  814

Query  825   PRNSSSENDRL---LQLTALMNRAVQSDGVVDLFDLLKKDRPNINLLSDEFLETVKNSPT  881
             P+++ + +       ++  L++++V +++V+D+++ L  ++P++++LSD+FL  V     
Sbjct  815   PKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQ  874

Query  882   KDLWLSAMERYLASQLREQSGANLATKKAFEQKLKEAMNQYHNHNLSVleileelialak  941
             K++ +  ++R L +Q++    +N +  K F + L +++N+Y+++++    ++EELI LAK
Sbjct  875   KNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAK  934

Query  942   efeaRQKRGEALGLSPAEMAFYDALARNESAVREMGDEVLMKLAKDITDKLRKSVTVDWQ  1001
             ++   Q+RG+ LGL++ E+AFYDAL  +E+A + M D  L  +A ++T  ++ +++VDW 
Sbjct  935   DIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWS  994

Query  1002  YKDSVRAKMRTLIRIALRTYKYPPDLQAEAIEFVLQQAEEIAGE  1045
              +DS +AKMR  +R  L+ Y YPPDLQ  A+E V++QAE +A++
Sbjct  995   KRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

172) J450_02390 in NC_021738


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  672 bits (2542),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 430/1064 (41%), Positives = 717/1064 (68%), Gaps = 54/1064 (5%)

Query  5     NENTIEQSAIATLQGLGWDYTYGKTI-LAGLEHEWRERATEVVLKPLLAEAIAKFNPNLP  63
             NE+ +EQ  +  L++L+ DY  G+ I ++GL  E++    +VVL   L  A+ K+N+++ 
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKS-DKDVVLHERLEKALRKINSDIH  64

Query  64    ACEVENVVAQVCRAESSDLAERNRQAYDWLRNGVKI-TYQLDGEQVSDVVQLIDFQRPEN  122
             +  +E+ + ++    S++L E N    + L NG+ I  Y+ +G+ + ++V+++DF++P+N
Sbjct  65    PRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQN  124

Query  123   NDFRIVNQLDIGGKKGKRIPDLIGFVNGLSLVVFELKNPLKENADIGKAFAQLQTYKDEI  182
             NDF  VNQ+ +      + PD++ F+NGL++VV+ELKN+ +E  ++  ++ QL+TYK  I
Sbjct  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  183   SDLFVFNQALVISDSIVARIGSLTADFDRFTPWRVVDEKNQNKRIVFEDELTALLQGVMN  242
             ++LF FN+ LV SD+I ++ GSLTA++DRF  WR  D   ++   +    L  L++G++N
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSL--ASLDVLINGMLN  242

Query  243   PKNLLDYVQNFVVFERDGKNRLIKKIGAYHQFYGVNEAVDCTLLATT--GNRKIGVFWHT  300
             PK LLD ++ FV+F+ DGK ++ K ++AYHQ+Y+VN AVD +LLA++  G+ K GV+WHT
Sbjct  243   PKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHT  302

Query  301   QGSGKSLSMLFYAGKVLSQGCLKNPTLVLVTERNDLDGQLYATFC-----GGEALLKQTP  355
             QGSGKSL+M+F++GK++    L+NPTLV+VT+RNDLD QLY+TF      +G +LL+QTP
Sbjct  303   QGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  356   IQADGRDELRSALASRSAGGVIFTTIQKFGLMEGELAHPVLNERENIIVITDEAHRSQYG  415
              QA+ R EL+S L+   +GG++FTT+QKF   + E   + L ER N+IV++DEAHR+QYG
Sbjct  361   KQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYG  419

Query  416   FSQKINHKGE-YREGYAKHLRSALPNASFIGFTGTPIELDDKDTQEVFGKYVSIYDFEDA  474
             F+ K ++KGE  + GYAK LR ALPNA+F+GFTGTP+   DK+TQ VFG+Y+ +YD  +A
Sbjct  420   FNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQA  479

Query  475   VEDGATVPIIYEPRQISLGESGEFTKVMEEA-QQLIDDDENSYNFRLREK------LHSV  527
             V DG+TV I YE+R I+L  +  +   ++EA +++ +D+E+  + RL+ K      L + 
Sbjct  480   VADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGA  537

Query  528   DSRLQKMAEDIIAHYDERTKQQDGKAMVVVMSRAICVKLYEKITALRPEWHSNDVLQGSI  587
              +R++ +A DII H++ R +   GK+M+V MSR I V LY+ I  L+PEWHS+D  +G I
Sbjct  538   KPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVI  597

Query  588   KIVMTSNASDPAEWQKHNQDKK---TLEKRFKDPDDPLNIVIVRDMWLTGFDAPCCNTMY  644
             K+VMT+++SDP+  Q+H   KK    LEKR KD +D L++VIVRDMWLTGFD P  +TMY
Sbjct  598   KVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMY  657

Query  645   IDKPMSGHNLMQAIARVNRVFRNKSRENGGLIVDYVGLTDELEKAMKQYTNAGGKEKPVR  704
             IDKPM GHNLMQAIARVNRVF++K+   GGLIVDYVG+++ L  A+K+YT+++  + ++ 
Sbjct  658   IDKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTESDQAQTAI-  713

Query  705   DISAVLEKMVEHITVIRGQFATPIDGQAVDIAKMLQISEPPKLLNAILTSANHILALDRI  764
             D    +E M+    VI++ +        +D +K      + +   +I  + + +++L+  
Sbjct  714   DTDKAVELMLLKYDVIQDMLYN------LDYSKFNSEKKSERYY-TISNTMDYVIGLGED  766

Query  765   QPPDNTAKDKTPRKNAFLQSVRLAKKGYALCGALKAVEPYKQELAFYDAVRATIIKNSTA  824
             +            ++ F+++V    K++ALC++  + +  ++E+AF+ AV+A ++K   +
Sbjct  767   E------------RQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQP  814

Query  825   PRNSSSENDRL---LQLTALMNRAVQSDGVVDLFDLLKKDRPNINLLSDEFLETVKNSPT  881
             P+++ + +       ++  L++++V +++V+D+++ L  ++P++++LSD+FL  V     
Sbjct  815   PKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQ  874

Query  882   KDLWLSAMERYLASQLREQSGANLATKKAFEQKLKEAMNQYHNHNLSVleileelialak  941
             K++ +  ++R L +Q++    +N +  K F + L +++N+Y+++++    ++EELI LAK
Sbjct  875   KNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAK  934

Query  942   efeaRQKRGEALGLSPAEMAFYDALARNESAVREMGDEVLMKLAKDITDKLRKSVTVDWQ  1001
             ++   Q+RG+ LGL++ E+AFYDAL  +E+A + M D  L  +A ++T  ++ +++VDW 
Sbjct  935   DIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWS  994

Query  1002  YKDSVRAKMRTLIRIALRTYKYPPDLQAEAIEFVLQQAEEIAGE  1045
              +DS +AKMR  +R  L+ Y YPPDLQ  A+E V++QAE +A++
Sbjct  995   KRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

173) J451_03490 in NC_021739


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  672 bits (2540),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 433/1064 (41%), Positives = 715/1064 (68%), Gaps = 54/1064 (5%)

Query  5     NENTIEQSAIATLQSLGWDYTYGKKI-LAGLEHEWRERTAEVILKPLLAQAIAKFNPNLP  63
             NE+ +EQ  +  L+SL+ DY  G+ I ++GL  E++    +V+L   L +A+ K+N+++ 
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKS-DKDVVLHERLEKALRKINSDIH  64

Query  64    ACEVENVVAQVCRADSGDLAERNRQAYDWLRNGVKI-TYQLYGEQVSDVVQLIDFQRPEN  122
             +  +E+ + ++    S +L E N    + L NG+ I  Y+  G+ + ++V+++DF++P+N
Sbjct  65    PRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQN  124

Query  123   NDFRIVNQLDISGKKGKRIPDLIGFVNGLPLVVFELKNPLKENADIGKAFAQLQTYKDEI  182
             NDF  VNQ+ +      + PD++ F+NGLP+VV+ELKN+ +E  ++  ++ QL+TYK  I
Sbjct  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  183   SDLFVFNQALVISDGIVARIGSLTADFDRFTPWRVVDEKNQSKRIVFEDELTALLQGVMT  242
             ++LF FN+ LV SDGI ++ GSLTA++DRF  WR  D   +S   +    L  L++G++ 
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSL--ASLDVLINGMLN  242

Query  243   PKNLLDYVQNFVVFERDGKNRLIKKIGAYHQFYGVNEAVDCTLLAAT--GNRKIGVFWHT  300
             PK LLD ++ FV+F+ DGK ++ K ++AYHQ+Y+VN AVD +LLA++  G+ K GV+WHT
Sbjct  243   PKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHT  302

Query  301   QGSGKSLSMLFYAGKVLSQSSLKNPTLVLVTDRNDLDGQLYATFC-----GGEALLKQTP  355
             QGSGKSL+M+F++GK++    L+NPTLV+VTDRNDLD QLY+TF      +G +LL+QTP
Sbjct  303   QGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  356   IQADGRDELRSALASRSAGGVIFTTIQKFGLMEGELAHPVLNERENIIVITDEAHRSQYG  415
              QA+ R EL+S L+   +GG++FTT+QKF   + E   + L ER N+IV++DEAHR+QYG
Sbjct  361   KQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYG  419

Query  416   FSQKINHKGE-YREGYAKHLRSALPNASFIGFTGTPIELDDKDTQEVFGKYVSIYDFEDA  474
             F+ K ++KGE  + GYAK LR ALPNA+F+GFTGTP+   DK+TQ VFG+Y+ +YD  +A
Sbjct  420   FNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQA  479

Query  475   VEDGATVPIIYEPRQISLGESGEFSKVMEEA-QQLIDDDENSYNFRLREK------LHSV  527
             V DG+TV I YE+R I+L  +  +   ++EA +++ +D+E+  + RL+ K      L + 
Sbjct  480   VADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGA  537

Query  528   DSRLQKMAEDIIAHYDERTKQQDGKAMVVVMSRAICVKLYEKITALRPEWHSNDVLQGSI  587
              +R++ +A DII H++ R +   GK+M+V MSR I V LY+ I  L+PEWHS+D  +G I
Sbjct  538   KPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVI  597

Query  588   KIVMTSNASDPAEWQKHNQDKK---TLEKRFKDPDDPLNIVIVRDMWLTGFDAPCCNTMY  644
             K+VMT+++SDP+  Q+H   KK    LEKR KD +D L++VIVRDMWLTGFD P  +TMY
Sbjct  598   KVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMY  657

Query  645   IDKPMSGHNLMQAIARVNRVFRNKSRENGGLIVDYVGLTDELEKAMKQYTNAGGKEKPVR  704
             IDKPM GHNLMQAIARVNRVF++K+   GGLIVDYVG+++ L  A+K+YT+++  + ++ 
Sbjct  658   IDKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTESDQAQTAI-  713

Query  705   DISAVLEKMVEHITVIRGQFATPIDGQAVDIAKMLQISEPPKLLNAILTSANHILALDRI  764
             D    +E M+    VI++ +        +D +K      + +   +I  + + +++L+  
Sbjct  714   DTDKAVELMLLKYDVIQDMLYN------LDYSKFNSEKKSERYY-TISNTMDYVIGLGED  766

Query  765   QPPDNTAKDKTPRKNAFLQSVRLAKKGYALCGALKAVEPYKQELAFYDAVRATIIKNSTA  824
             +            ++ F+++V    K++ALC++  + +  ++E+AF+ AV+A ++K   +
Sbjct  767   E------------RQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQP  814

Query  825   PRNSSSENDRL---LQLTALMNRAVQSDGVVDLFDLLKKDRPNINLLSDEFLETVKNSPT  881
             P+++ + +       ++  L++++V +++V+D+++ L  ++P++++LSD+FL  V     
Sbjct  815   PKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQ  874

Query  882   KDLWLSAMERYLASQLREQSGANLATKKAFEQKLKEAMNQYHNHNLSVleileelialak  941
             K++ +  ++R L +Q++    +N +  K F + L +++N+Y+++++    ++EELI LAK
Sbjct  875   KNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAK  934

Query  942   efeaRQKRGEALGLSPAEMAFYDALARNESAVREMGDEVLMKLAKDITDKLRKSVTVDWQ  1001
             ++   Q+RG+ LGL++ E+AFYDAL  +E+A + M D  L  +A ++T  ++ +++VDW 
Sbjct  935   DIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWS  994

Query  1002  YKDSVRAKMRTLIRIALRTYKYPPDLQAEAIEFVLQQAEEIAGE  1045
              +DS +AKMR  +R  L+ Y YPPDLQ  A+E V++QAE +A++
Sbjct  995   KRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

174) MHH_c24310 in NC_021082


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  672 bits (2542),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 433/1064 (41%), Positives = 715/1064 (68%), Gaps = 54/1064 (5%)

Query  5     NENTIEQSAIATLQSLGWDYTYGKKI-LAGLEHEWRERTAEVILKPLLAQAIAKFNPNLP  63
             NE+ +EQ  +  L+SL+ DY  G+ I ++GL  E++    +V+L   L +A+ K+N+++ 
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKS-DKDVVLHERLEKALRKINSDIH  64

Query  64    ACEVENVVAQVCRADSGDLAERNRQAYDWLRNGVKI-TYQLYGEQVSDVVQLIDFQRPEN  122
             +  +E+ + ++    S +L E N    + L NG+ I  Y+  G+ + ++V+++DF++P+N
Sbjct  65    PRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQN  124

Query  123   NDFRIVNQLDISGKKGKRIPDLIGFVNGLPLVVFELKNPLKENADIGKAFAQLQTYKDEI  182
             NDF  VNQ+ +      + PD++ F+NGLP+VV+ELKN+ +E  ++  ++ QL+TYK  I
Sbjct  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  183   SDLFVFNQALVISDGIVARIGSLTADFDRFTPWRVVDEKNQSKRIVFEDELTALLQGVMT  242
             ++LF FN+ LV SDGI ++ GSLTA++DRF  WR  D   +S   +    L  L++G++ 
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSL--ASLDVLINGMLN  242

Query  243   PKNLLDYVQNFVVFERDGKNRLIKKIGAYHQFYGVNEAVDCTLLAATG--NRKIGVFWHT  300
             PK LLD ++ FV+F+ DGK ++ K ++AYHQ+Y+VN AVD +LLA++G  + K GV+WHT
Sbjct  243   PKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHT  302

Query  301   QGSGKSLSMLFYAGKVLSQSSLKNPTLVLVTDRNDLDGQLYATFC-----GGEALLKQTP  355
             QGSGKSL+M+F++GK++    L+NPTLV+VTDRNDLD QLY+TF      +G +LL+QTP
Sbjct  303   QGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  356   IQADGRDELRSALASRSAGGVIFTTIQKFGLMEGELAHPVLNERENIIVITDEAHRSQYG  415
              QA+ R EL+S L+   +GG++FTT+QKF   + E   + L ER N+IV++DEAHR+QYG
Sbjct  361   KQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYG  419

Query  416   FSQKINHKGE-YREGYAKHLRSALPNASFIGFTGTPIELDDKDTQEVFGKYVSIYDFEDA  474
             F+ K ++KGE  + GYAK LR ALPNA+F+GFTGTP+   DK+TQ VFG+Y+ +YD  +A
Sbjct  420   FNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQA  479

Query  475   VEDGATVPIIYEPRQISLGESGEFSKVMEEA-QQLIDDDENSYNFRLREK------LHSV  527
             V DG+TV I YE+R I+L  +  +   ++EA +++ +D+E+  + RL+ K      L + 
Sbjct  480   VADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGA  537

Query  528   DSRLQKMAEDIIAHYDERTKQQDGKAMVVVMSRAICVKLYEKITALRPEWHSNDVLQGSI  587
              +R++ +A DII H++ R +   GK+M+V MSR I V LY+ I  L+PEWHS+D  +G I
Sbjct  538   KPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVI  597

Query  588   KIVMTSNASDPAEWQKHNQDKK---TLEKRFKDPDDPLNIVIVRDMWLTGFDAPCCNTMY  644
             K+VMT+++SDP+  Q+H   KK    LEKR KD +D L++VIVRDMWLTGFD P  +TMY
Sbjct  598   KVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMY  657

Query  645   IDKPMSGHNLMQAIARVNRVFRNKSRENGGLIVDYVGLTDELEKAMKQYTNAGGKEKPVR  704
             IDKPM GHNLMQAIARVNRVF++K+   GGLIVDYVG+++ L  A+K+YT+++  + ++ 
Sbjct  658   IDKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTESDQAQTAI-  713

Query  705   DISAVLEKMVEHITVIHGQFATPIDGQAVDIAKMLQISEPPKLLNAILTSANHILALDRI  764
             D    +E M+    VI++ +        +D +K      + +   +I  + + +++L+  
Sbjct  714   DTDKAVELMLLKYDVIQDMLYN------LDYSKFNSEKKSERYY-TISNTMDYVIGLGED  766

Query  765   QPPDNTAKDKTPRKNAFLQSVRLAKKGYALCGALKAVEPYKQELAFYDAVRATIIKNSTA  824
             +            ++ F+++V    K++ALC++  + +  ++E+AF+ AV+A ++K   +
Sbjct  767   E------------RQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQP  814

Query  825   PRNSSSENDRL---LQLTALMNRAVQSDGVVDLFDLLKKDRPNINLLSDEFLETVKNSPT  881
             P+++ + +       ++  L++++V +++V+D+++ L  ++P++++LSD+FL  V     
Sbjct  815   PKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQ  874

Query  882   KDLWLSAMERYLASQLREQSGANLATKKAFEQKLKEAMNQYHNHNLSVleileelialak  941
             K++ +  ++R L +Q++    +N +  K F + L +++N+Y+++++    ++EELI LAK
Sbjct  875   KNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAK  934

Query  942   efeaRQKRGEALGLSPAEMAFYDALARNESAVREMGDEVLMKLAKDITDKLRKSVTVDWQ  1001
             ++   Q+RG+ LGL++ E+AFYDAL  +E+A + M D  L  +A ++T  ++ +++VDW 
Sbjct  935   DIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWS  994

Query  1002  YKDSVRAKMRTLIRIALRTYKYPPDLQAEAIEFVLQQAEEIAGE  1045
              +DS +AKMR  +R  L+ Y YPPDLQ  A+E V++QAE +A++
Sbjct  995   KRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

175) D648_15990 in NC_020834


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  672 bits (2540),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 433/1064 (41%), Positives = 715/1064 (68%), Gaps = 54/1064 (5%)

Query  5     NENTIEQSAIATLQSLGWDYTYGKKI-LAGLEHEWRERTAEVILKPLLAQAIAKFNPNLP  63
             NE+ +EQ  +  L+SL+ DY  G+ I ++GL  E++    +V+L   L +A+ K+N+++ 
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKS-DKDVVLHERLEKALRKINSDIH  64

Query  64    ACEVENVVAQVCRADSGDLAERNRQAYDWLRNGVKI-TYQLYGEQVSDVVQLIDFQRPEN  122
             +  +E+ + ++    S +L E N    + L NG+ I  Y+  G+ + ++V+++DF++P+N
Sbjct  65    PRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQN  124

Query  123   NDFRIVNQLDISGKKGKRIPDLIGFVNGLPLVVFELKNPLKENADIGKAFAQLQTYKDEI  182
             NDF  VNQ+ +      + PD++ F+NGLP+VV+ELKN+ +E  ++  ++ QL+TYK  I
Sbjct  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  183   SDLFVFNQALVISDGIVARIGSLTADFDRFTPWRVVDEKNQSKRIVFEDELTALLQGVMT  242
             ++LF FN+ LV SDGI ++ GSLTA++DRF  WR  D   +S   +    L  L++G++ 
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSL--ASLDVLINGMLN  242

Query  243   PKNLLDYVQNFVVFERDGKNRLIKKIGAYHQFYGVNEAVDCTLLAAT--GNRKIGVFWHT  300
             PK LLD ++ FV+F+ DGK ++ K ++AYHQ+Y+VN AVD +LLA++  G+ K GV+WHT
Sbjct  243   PKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHT  302

Query  301   QGSGKSLSMLFYAGKVLSQSSLKNPTLVLVTDRNDLDGQLYATFC-----GGEALLKQTP  355
             QGSGKSL+M+F++GK++    L+NPTLV+VTDRNDLD QLY+TF      +G +LL+QTP
Sbjct  303   QGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  356   IQADGRDELRSALASRSAGGVIFTTIQKFGLMEGELAHPVLNERENIIVITDEAHRSQYG  415
              QA+ R EL+S L+   +GG++FTT+QKF   + E   + L ER N+IV++DEAHR+QYG
Sbjct  361   KQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYG  419

Query  416   FSQKINHKGE-YREGYAKHLRSALPNASFIGFTGTPIELDDKDTQEVFGKYVSIYDFEDA  474
             F+ K ++KGE  + GYAK LR ALPNA+F+GFTGTP+   DK+TQ VFG+Y+ +YD  +A
Sbjct  420   FNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQA  479

Query  475   VEDGATVPIIYEPRQISLGESGEFSKVMEEA-QQLIDDDENSYNFRLREK------LHSV  527
             V DG+TV I YE+R I+L  +  +   ++EA +++ +D+E+  + RL+ K      L + 
Sbjct  480   VADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGA  537

Query  528   DSRLQKMAEDIIAHYDERTKQQDGKAMVVVMSRAICVKLYEKITALRPEWHSNDVLQGSI  587
              +R++ +A DII H++ R +   GK+M+V MSR I V LY+ I  L+PEWHS+D  +G I
Sbjct  538   KPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVI  597

Query  588   KIVMTSNASDPAEWQKHNQDKK---TLEKRFKDPDDPLNIVIVRDMWLTGFDAPCCNTMY  644
             K+VMT+++SDP+  Q+H   KK    LEKR KD +D L++VIVRDMWLTGFD P  +TMY
Sbjct  598   KVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMY  657

Query  645   IDKPMSGHNLMQAIARVNRVFRNKSRENGGLIVDYVGLTDELEKAMKQYTNAGGKEKPVR  704
             IDKPM GHNLMQAIARVNRVF++K+   GGLIVDYVG+++ L  A+K+YT+++  + ++ 
Sbjct  658   IDKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTESDQAQTAI-  713

Query  705   DISAVLEKMVEHITVIRGQFATPIDGQAVDIAKMLQISEPPKLLNAILTSANHILALDRI  764
             D    +E M+    VI++ +        +D +K      + +   +I  + + +++L+  
Sbjct  714   DTDKAVELMLLKYDVIQDMLYN------LDYSKFNSEKKSERYY-TISNTMDYVIGLGED  766

Query  765   QPPDNTAKDKTPRKNAFLQSVRLAKKGYALCGALKAVEPYKQELAFYDAVRATIIKNSTA  824
             +            ++ F+++V    K++ALC++  + +  ++E+AF+ AV+A ++K   +
Sbjct  767   E------------RQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQP  814

Query  825   PRNSSSENDRL---LQLTALMNRAVQSDGVVDLFDLLKKDRPNINLLSDEFLETVKNSPT  881
             P+++ + +       ++  L++++V +++V+D+++ L  ++P++++LSD+FL  V     
Sbjct  815   PKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQ  874

Query  882   KDLWLSAMERYLASQLREQSGANLATKKAFEQKLKEAMNQYHNHNLSVleileelialak  941
             K++ +  ++R L +Q++    +N +  K F + L +++N+Y+++++    ++EELI LAK
Sbjct  875   KNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAK  934

Query  942   efeaRQKRGEALGLSPAEMAFYDALARNESAVREMGDEVLMKLAKDITDKLRKSVTVDWQ  1001
             ++   Q+RG+ LGL++ E+AFYDAL  +E+A + M D  L  +A ++T  ++ +++VDW 
Sbjct  935   DIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWS  994

Query  1002  YKDSVRAKMRTLIRIALRTYKYPPDLQAEAIEFVLQQAEEIAGE  1045
              +DS +AKMR  +R  L+ Y YPPDLQ  A+E V++QAE +A++
Sbjct  995   KRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

176) D650_9850 in NC_020833


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  672 bits (2540),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 433/1064 (41%), Positives = 715/1064 (68%), Gaps = 54/1064 (5%)

Query  5     NENTIEQSAIATLQSLGWDYTYGKKI-LAGLEHEWRERTAEVILKPLLAQAIAKFNPNLP  63
             NE+ +EQ  +  L+SL+ DY  G+ I ++GL  E++    +V+L   L +A+ K+N+++ 
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKS-DKDVVLHERLEKALRKINSDIH  64

Query  64    ACEVENVVAQVCRADSGDLAERNRQAYDWLRNGVKI-TYQLYGEQVSDVVQLIDFQRPEN  122
             +  +E+ + ++    S +L E N    + L NG+ I  Y+  G+ + ++V+++DF++P+N
Sbjct  65    PRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQN  124

Query  123   NDFRIVNQLDISGKKGKRIPDLIGFVNGLPLVVFELKNPLKENADIGKAFAQLQTYKDEI  182
             NDF  VNQ+ +      + PD++ F+NGLP+VV+ELKN+ +E  ++  ++ QL+TYK  I
Sbjct  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  183   SDLFVFNQALVISDGIVARIGSLTADFDRFTPWRVVDEKNQSKRIVFEDELTALLQGVMT  242
             ++LF FN+ LV SDGI ++ GSLTA++DRF  WR  D   +S   +    L  L++G++ 
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSL--ASLDVLINGMLN  242

Query  243   PKNLLDYVQNFVVFERDGKNRLIKKIGAYHQFYGVNEAVDCTLLAAT--GNRKIGVFWHT  300
             PK LLD ++ FV+F+ DGK ++ K ++AYHQ+Y+VN AVD +LLA++  G+ K GV+WHT
Sbjct  243   PKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHT  302

Query  301   QGSGKSLSMLFYAGKVLSQSSLKNPTLVLVTDRNDLDGQLYATFC-----GGEALLKQTP  355
             QGSGKSL+M+F++GK++    L+NPTLV+VTDRNDLD QLY+TF      +G +LL+QTP
Sbjct  303   QGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  356   IQADGRDELRSALASRSAGGVIFTTIQKFGLMEGELAHPVLNERENIIVITDEAHRSQYG  415
              QA+ R EL+S L+   +GG++FTT+QKF   + E   + L ER N+IV++DEAHR+QYG
Sbjct  361   KQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYG  419

Query  416   FSQKINHKGE-YREGYAKHLRSALPNASFIGFTGTPIELDDKDTQEVFGKYVSIYDFEDA  474
             F+ K ++KGE  + GYAK LR ALPNA+F+GFTGTP+   DK+TQ VFG+Y+ +YD  +A
Sbjct  420   FNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQA  479

Query  475   VEDGATVPIIYEPRQISLGESGEFSKVMEEA-QQLIDDDENSYNFRLREK------LHSV  527
             V DG+TV I YE+R I+L  +  +   ++EA +++ +D+E+  + RL+ K      L + 
Sbjct  480   VADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGA  537

Query  528   DSRLQKMAEDIIAHYDERTKQQDGKAMVVVMSRAICVKLYEKITALRPEWHSNDVLQGSI  587
              +R++ +A DII H++ R +   GK+M+V MSR I V LY+ I  L+PEWHS+D  +G I
Sbjct  538   KPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVI  597

Query  588   KIVMTSNASDPAEWQKHNQDKK---TLEKRFKDPDDPLNIVIVRDMWLTGFDAPCCNTMY  644
             K+VMT+++SDP+  Q+H   KK    LEKR KD +D L++VIVRDMWLTGFD P  +TMY
Sbjct  598   KVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMY  657

Query  645   IDKPMSGHNLMQAIARVNRVFRNKSRENGGLIVDYVGLTDELEKAMKQYTNAGGKEKPVR  704
             IDKPM GHNLMQAIARVNRVF++K+   GGLIVDYVG+++ L  A+K+YT+++  + ++ 
Sbjct  658   IDKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTESDQAQTAI-  713

Query  705   DISAVLEKMVEHITVIRGQFATPIDGQAVDIAKMLQISEPPKLLNAILTSANHILALDRI  764
             D    +E M+    VI++ +        +D +K      + +   +I  + + +++L+  
Sbjct  714   DTDKAVELMLLKYDVIQDMLYN------LDYSKFNSEKKSERYY-TISNTMDYVIGLGED  766

Query  765   QPPDNTAKDKTPRKNAFLQSVRLAKKGYALCGALKAVEPYKQELAFYDAVRATIIKNSTA  824
             +            ++ F+++V    K++ALC++  + +  ++E+AF+ AV+A ++K   +
Sbjct  767   E------------RQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQP  814

Query  825   PRNSSSENDRL---LQLTALMNRAVQSDGVVDLFDLLKKDRPNINLLSDEFLETVKNSPT  881
             P+++ + +       ++  L++++V +++V+D+++ L  ++P++++LSD+FL  V     
Sbjct  815   PKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQ  874

Query  882   KDLWLSAMERYLASQLREQSGANLATKKAFEQKLKEAMNQYHNHNLSVleileelialak  941
             K++ +  ++R L +Q++    +N +  K F + L +++N+Y+++++    ++EELI LAK
Sbjct  875   KNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAK  934

Query  942   efeaRQKRGEALGLSPAEMAFYDALARNESAVREMGDEVLMKLAKDITDKLRKSVTVDWQ  1001
             ++   Q+RG+ LGL++ E+AFYDAL  +E+A + M D  L  +A ++T  ++ +++VDW 
Sbjct  935   DIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWS  994

Query  1002  YKDSVRAKMRTLIRIALRTYKYPPDLQAEAIEFVLQQAEEIAGE  1045
              +DS +AKMR  +R  L+ Y YPPDLQ  A+E V++QAE +A++
Sbjct  995   KRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

177) N220_08970 in NC_021883


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  672 bits (2540),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 433/1064 (41%), Positives = 715/1064 (68%), Gaps = 54/1064 (5%)

Query  5     NENTIEQSAIATLQSLGWDYTYGKKI-LAGLEHEWRERTAEVILKPLLAQAIAKFNPNLP  63
             NE+ +EQ  +  L+SL+ DY  G+ I ++GL  E++    +V+L   L +A+ K+N+++ 
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKS-DKDVVLHERLEKALRKINSDIH  64

Query  64    ACEVENVVAQVCRADSGDLAERNRQAYDWLRNGVKI-TYQLYGEQVSDVVQLIDFQRPEN  122
             +  +E+ + ++    S +L E N    + L NG+ I  Y+  G+ + ++V+++DF++P+N
Sbjct  65    PRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQN  124

Query  123   NDFRIVNQLDISGKKGKRIPDLIGFVNGLPLVVFELKNPLKENADIGKAFAQLQTYKDEI  182
             NDF  VNQ+ +      + PD++ F+NGLP+VV+ELKN+ +E  ++  ++ QL+TYK  I
Sbjct  125   NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  183   SDLFVFNQALVISDGIVARIGSLTADFDRFTPWRVVDEKNQSKRIVFEDELTALLQGVMT  242
             ++LF FN+ LV SDGI ++ GSLTA++DRF  WR  D   +S   +    L  L++G++ 
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSL--ASLDVLINGMLN  242

Query  243   PKNLLDYVQNFVVFERDGKNRLIKKIGAYHQFYGVNEAVDCTLLAAT--GNRKIGVFWHT  300
             PK LLD ++ FV+F+ DGK ++ K ++AYHQ+Y+VN AVD +LLA++  G+ K GV+WHT
Sbjct  243   PKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHT  302

Query  301   QGSGKSLSMLFYAGKVLSQSSLKNPTLVLVTDRNDLDGQLYATFC-----GGEALLKQTP  355
             QGSGKSL+M+F++GK++    L+NPTLV+VTDRNDLD QLY+TF      +G +LL+QTP
Sbjct  303   QGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTP  360

Query  356   IQADGRDELRSALASRSAGGVIFTTIQKFGLMEGELAHPVLNERENIIVITDEAHRSQYG  415
              QA+ R EL+S L+   +GG++FTT+QKF   + E   + L ER N+IV++DEAHR+QYG
Sbjct  361   KQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYG  419

Query  416   FSQKINHKGE-YREGYAKHLRSALPNASFIGFTGTPIELDDKDTQEVFGKYVSIYDFEDA  474
             F+ K ++KGE  + GYAK LR ALPNA+F+GFTGTP+   DK+TQ VFG+Y+ +YD  +A
Sbjct  420   FNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQA  479

Query  475   VEDGATVPIIYEPRQISLGESGEFSKVMEEA-QQLIDDDENSYNFRLREK------LHSV  527
             V DG+TV I YE+R I+L  +  +   ++EA +++ +D+E+  + RL+ K      L + 
Sbjct  480   VADGSTVKIYYESRVIPLNLPQSLD--LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGA  537

Query  528   DSRLQKMAEDIIAHYDERTKQQDGKAMVVVMSRAICVKLYEKITALRPEWHSNDVLQGSI  587
              +R++ +A DII H++ R +   GK+M+V MSR I V LY+ I  L+PEWHS+D  +G I
Sbjct  538   KPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVI  597

Query  588   KIVMTSNASDPAEWQKHNQDKK---TLEKRFKDPDDPLNIVIVRDMWLTGFDAPCCNTMY  644
             K+VMT+++SDP+  Q+H   KK    LEKR KD +D L++VIVRDMWLTGFD P  +TMY
Sbjct  598   KVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMY  657

Query  645   IDKPMSGHNLMQAIARVNRVFRNKSRENGGLIVDYVGLTDELEKAMKQYTNAGGKEKPVR  704
             IDKPM GHNLMQAIARVNRVF++K+   GGLIVDYVG+++ L  A+K+YT+++  + ++ 
Sbjct  658   IDKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTESDQAQTAI-  713

Query  705   DISAVLEKMVEHITVIRGQFATPIDGQAVDIAKMLQISEPPKLLNAILTSANHILALDRI  764
             D    +E M+    VI++ +        +D +K      + +   +I  + + +++L+  
Sbjct  714   DTDKAVELMLLKYDVIQDMLYN------LDYSKFNSEKKSERYY-TISNTMDYVIGLGED  766

Query  765   QPPDNTAKDKTPRKNAFLQSVRLAKKGYALCGALKAVEPYKQELAFYDAVRATIIKNSTA  824
             +            ++ F+++V    K++ALC++  + +  ++E+AF+ AV+A ++K   +
Sbjct  767   E------------RQRFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQP  814

Query  825   PRNSSSENDRL---LQLTALMNRAVQSDGVVDLFDLLKKDRPNINLLSDEFLETVKNSPT  881
             P+++ + +       ++  L++++V +++V+D+++ L  ++P++++LSD+FL  V     
Sbjct  815   PKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQ  874

Query  882   KDLWLSAMERYLASQLREQSGANLATKKAFEQKLKEAMNQYHNHNLSVleileelialak  941
             K++ +  ++R L +Q++    +N +  K F + L +++N+Y+++++    ++EELI LAK
Sbjct  875   KNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAK  934

Query  942   efeaRQKRGEALGLSPAEMAFYDALARNESAVREMGDEVLMKLAKDITDKLRKSVTVDWQ  1001
             ++   Q+RG+ LGL++ E+AFYDAL  +E+A + M D  L  +A ++T  ++ +++VDW 
Sbjct  935   DIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWS  994

Query  1002  YKDSVRAKMRTLIRIALRTYKYPPDLQAEAIEFVLQQAEEIAGE  1045
              +DS +AKMR  +R  L+ Y YPPDLQ  A+E V++QAE +A++
Sbjct  995   KRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASN  1038

178) FMG_1372 in NC_010376


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  669 bits (2531),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 433/1039 (42%), Positives = 694/1039 (67%), Gaps = 47/1039 (4%)

Query  5     YTEADYEKSIIELFQEMGYRY-----VYAPGLERDLHSP----LYEKELEDALYRLNPDM  55
             + E D E+ ++E ++ ++Y Y     +   GL  +  S     L E+ LE AL ++N+D+
Sbjct  5     FNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHER-LEKALRKINSDI  63

Query  56    SDDAIRDALYKLHNFENGELVQKNAVFMDYIQHGIEVR-YFVKGEERSGIVYLVDYSNPD  114
                 I  A+  L    + +L+++N  F + + +GIE+  Y   G+    IV +VD+ +P+
Sbjct  64    HPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQ  123

Query  115   NNSYVVANQWTFVENS-NKRLDVLLFLNGLPVVLVELKSPSREETAASEAYLQIRNYMHE  173
             NN ++  NQ T V+    KR D++LF+NGLP+V++ELK+++ E  +  ++Y Q+  Y   
Sbjct  124   NNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  174   IPSMFIYNCICVMSDHLTSKAGTITSGEDRFMEWKTKDGNYENTQ-YAQFDTFFEGMFER  232
             IP +F +N + V SD + +KAG++T+  DRFM W++KDG+ E++   A +D +++GM++ 
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNP  243

Query  233   ARLLDIIKNFICFSNEGLKRF-KILAGYHQYFAVNKAIESS--KHACETDGKGGVFWHTQ  289
               LLD+I+ F+ F ++G  ++ KILA+YHQY+AVNKA++ +    + + DGKGGV+WHTQ
Sbjct  244   KTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQ  303

Query  290   GSGKSLSMVFYAHLLQTALNSPTIVVITDRNDLDDQLYGQFMKCKD-----FLRQEPVHA  344
             GSGKSL+MVF++  L   LN+PT+V++TDRNDLD+QLY+ F+K K+     +LRQ P +A
Sbjct  304   GSGKSLTMVFFSGKLIQMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQA  363

Query  345   SSRANLKELLEGRQVNGIIFTTMQKFEES-----FECLSERRNIIVMADEAHRGQYGLKE  399
              +R +LK LL + +  GI+FTTMQKFE          L+ER+N+IVMADEAHR QYG++ 
Sbjct  364   ETRKELKSLL-SVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFNA  422

Query  400   RVDEKTGEIKIGSARIIRNALPNATYIGFTGTPVSMKDRNTREVFGDYIDIYDMTQAVED  459
             + D+K   IK G A+ +R+ALPNAT++GFTGTPV+  D+NT+ VFG+YID+YDMTQAV D
Sbjct  423   KYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVAD  482

Query  460   GATRPVYYESRVMKLKLDEQTLHLIDQEYDVMAENADVYVIEKSKKELGQMEAILGNDKT  519
             G+T  +YYESRV+ L+L  Q+L+L D+ Y+ ++E+ +  V ++ K   +++EA+ G    
Sbjct  483   GSTVKIYYESRVIPLNL-PQSLDL-DEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPR  540

Query  520   IDSLVDDILDHYENYRENLLTGKAMIVAYSRPIAMKIYKKILELRPGWTDK------VAV  573
             +++L  DI++H+E  R++ + GK+MIV+ SR IA+ +Y  I+ L+P W         + V
Sbjct  541   VEALAKDIIQHFET-RQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKV  599

Query  574   VMTNSNKDPEDWSHIIGNKRHKDELAMSFKDDESPLKIAIVVDMWLTGFDVPSLATMYVY  633
             VMT S+ DP    + IG K+++  L    KD +  L++ IV DMWLTGFDVPS+ TMY+ 
Sbjct  600   VMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYID  659

Query  634   KPMHGYNLMQAIARVNRVFGDKEGGLVVDYVGIASALKQAMNDYTARDKKNYGDTDVAKV  693
             KPM G NLMQAIARVNRVF DK GGL+VDYVGIA +LK+A+++YT  D+ +    D  K 
Sbjct  660   KPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQ-TAIDTDKA  718

Query  694   AYPKFLEKLSICRDLFHGYDYSKFMEGTDLERSRAISGAVNFIVAPIRKKEREDYLKEAL  753
                 +L K  + +D++   DYSKF      ER  +IS +++++++ +   ER+ ++K   
Sbjct  719   VELMLL-KYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIG-LGEDERQRFIKTVT  776

Query  754   LLKQALSLCSS-LAERELRIEAAFFESVRVLVTRIM---NQGEGKKISLHEINARINELL  809
              L +A++LC++  + +EL  E AFF +V+  + +++   ++G  +K +  E++A IN+L+
Sbjct  777   ELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTP-AEVEAEINQLV  835

Query  810   KASVKSEGVINLFSDVS---GGFNLFDPKFLDEISKMKEKNLAVELLKKLISEQVKIYKH  866
               SV +E+VI+++  ++    +++++   FL ++  +K+KN+AVELL++L+  QVK    
Sbjct  836   SQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMK  895

Query  867   TNVVKSKKFSEIIQQAMNAYLNGMLTNEQVIEELLNLAKQIAEAHKEGEQLGLTADELAF  926
             TN   SK+FSE++ +++N Y +  +   +VIEEL++LAK+I + ++ G++LGL +DE+AF
Sbjct  896   TNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAF  955

Query  927   YDALTKPQAIKDFYENEELIAITKELADTLRKNRTIDWQKRDSARARMRMMIKKLLRSHR  986
             YDAL   ++ K   E+  L AI+ EL+ T++ N ++DW KRDSA+A+MR+ +++LL+   
Sbjct  956   YDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYG  1015

Query  987   YPPDGMDDAVETVMTQCEL  1005
             YPPD    AVE V+ Q EL
Sbjct  1016  YPPDLQKMAVEQVVEQAEL  1034

179) Desaf_3450 in NC_016629


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  658 bits (2488),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 426/1037 (42%), Positives = 686/1037 (67%), Gaps = 55/1037 (5%)

Query  20    EQLGYSIRSGKEVDS---DVEREHTAAIFLRQRIDDAAQHLSPQITAWARQQALKHLQKP  76
             E L+Y  + G+E+       ER     + L++R++ A + ++++I ++  ++A+ +L   
Sbjct  19    ESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHPRFIEKAIHELTLE  78

Query  77    EYSTLAQNNRWFHTLLTEGVEVE-YRDPASGETRGDRARLIDFNHPRQNDLLVVRQLAVT  135
               + L +NN  FH  L +G+E+E Y D   G++  +  +++DF+HP++ND+L V Q++V 
Sbjct  79    KSPNLLENNLTFHENLINGIEIEDYDD--EGQSIVEIVKIVDFEHPQNNDFLAVNQFTVV  136

Query  136   GLSGKLIRPDLTVFLNGLPIAVIELKDPTNTGADLNMAIGQLRD-KMQIAPDLFVPNLLL  194
               ++   RPD+ +F+NGLPI VIELK++TN   +++ +  QL   KM+I P+LF  N +L
Sbjct  137   N-GDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI-PQLFTFNEVL  194

Query  195   VVSDGLLTRVGSITSGISRFTPWRSAEGGK------PTLEALIHELFEPSMLLDYLRTCI  248
             V SDG+ T+ GS+T+   RF  WRS +G        ++L+ LI+ +++P  LLD +R  +
Sbjct  195   VTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPKTLLDLIRYFV  254

Query  249   TFEEDERGGIAKKIAGYHQFRAVRNTRASVLAHLKSPIGKGDGRGGVVWHTQGSGKSLTM  308
              F++D +G I+K +A+YHQ+ AV ++    L    ++ G+GDG+GGV+WHTQGSGKSLTM
Sbjct  255   LFQDDGKGHISKILAAYHQYYAVNKAVDRALL---ASSGQGDGKGGVIWHTQGSGKSLTM  311

Query  309   LMLAGALVREPVMANPTIVMVTDRNDLDDQLFGTFA-----AGRALLRQEPIQAESREHL  363
             + ++G L++  ++ NPT+V+VTDRNDLD+QL++TF      +G++LLRQ P QAE+R +L
Sbjct  312   VFFSGKLIQ--MLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKEL  369

Query  364   KELLDRAAGGVVFTTIHKFTDAH-----GVISERANVVVMADEAHRSQYGLIE-------  411
             K LL   +GG+VFTT++KF   +     + ++ER NV+VMADEAHR+QYG+         
Sbjct  370   KSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFNAKYDDKGE  429

Query  412   ----GGARWMREALPNATFVGFTGTPLERDDKNTIHVFGEYSDVYDLRQAVEDGATKPLY  467
                 G A+ +R+ALPNATFVGFTGTP+   DKNT  VFG+Y DVYD+ QAV DG+T  +Y
Sbjct  430   GIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIY  489

Query  468   YESRIVKLTVDGaraaaaeaeleqavkaDASGEEVADQIRI---PLEALVGAQERVARLA  524
             YESR++ L +    + + + +      ++   E+V ++++     +EAL GA+ RV  LA
Sbjct  490   YESRVIPLNL----PQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALA  545

Query  525   AFIVEHWEKRRAAMEGKAMIVTMSRDIAARLYEGIKAFRPDWHDPDDERGVMKVIITERG  584
               I++H E R+ AM GK+MIVTMSR IA  LY+ I  ++P+WH  DD++GV+KV++T  +
Sbjct  546   KDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSS  605

Query  585   NDAEPLRSHVRPKAARKRLAERFKSPDDDFRLVIVCNMWLTGFDCPPAHTMYLDKPLASH  644
             +D+ +++ H+ PK  R  L  R K  +D+++LVIV +MWLTGFD P+ HTMY+DKP+ +H
Sbjct  606   SDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGH  665

Query  645   NLMQAIARVNRVYGDKPGGLIVdllgladqladalaTYTQAGGTGEAVKQVQDEAVPAMQ  704
             NLMQAIARVNRV+ DKPGGLIVD +G+A+ L +AL  YT+++ +  A+    D AV  M 
Sbjct  666   NLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDT--DKAVELML  723

Query  705   TAFEKLRAFFHGCAYEAALDTEPKEVLPIYL--AAIDHVFA-QQDGWKRLRALVKELSAA  761
               ++ ++  +    Y + +++E K     Y    ++D V++  +D ++R+   V EL+ A
Sbjct  724   LKYDVIQDMLYNLDY-SKFNSEKKSE-RYYTISNTMDYVIGLGEDERQRFIKTVTELGKA  781

Query  762   FALAVPRPETEKVVDHLAFFQRVTAMIRKKLTDESGSAMKAHQRDVDAAVRQIIGGAVEA  821
             FAL    P ++ + D++AFF+ V A + K L     +  +    +V+A + Q+++ +V +
Sbjct  782   FALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVT  841

Query  822   DQVIDLFAAAGLDEARLDILSDEFLQRVAALEQKNLALETLRKLLTDQIRITERMNIVQS  881
             ++VID++ + GL+++ L ILSD+FL+ V +L QKN+A+E L +LL +Q++   + N   S
Sbjct  842   EDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVS  901

Query  882   KKFREALEDAMLRYTNKAITTAEMISRLLDLAKDLRNAQRRGEDQGLSREEAAFYDALAE  941
             K+F E L +++ +Y +++I T+ +I  L++LAKD+++ Q+RG++ GL+ +E AFYDAL  
Sbjct  902   KRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVS  961

Query  942   NGSAREVMKSDTLRLMARELTEMIKKMPKLDWTQRESVRAGLRRSVRRLLAKYGYPPDLA  1001
             + +A+  M    LR +A+ELT  +K    +DW++R+S +A +R +VRRLL KYGYPPDL 
Sbjct  962   HETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQ  1021

Query  1002  EDATQLVLRQAELSTTN  1018
               A + V+ QAEL ++N
Sbjct  1022  KMAVEQVVEQAELMASN  1038

180) hsdR in NC_017451


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  658 bits (2486),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 446/1086 (42%), Positives = 726/1086 (67%), Gaps = 85/1086 (7%)

Query  3     NENDIEQLTLQRLQSLGWEYRYGKDLPVHEGKFARGDLSGVVFVEQLREAVRKLNPQLPE  62
             NE+D+EQ+ L++L+SL+ +Y+ G+++++      R    +VV+ E+L  A+RK+N+++  
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  63    SAVDSVVKSATKSDIGDLVVRNQTFYKLLRDGVRVEYQAPNSHGQNEQKIEMVRLVDFEH  122
               ++  +   T     +L+  N TF   L +G+ +E    + +++ +  +E+V++VDFEH
Sbjct  66    RFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIE----DYDDEGQSIVEIVKIVDFEH  121

Query  123   WENNRFVAVNQLEIRSRKGGKRIPDIIGFVNGLPLVVFELKNPLRESADLLQAFNQFETY  182
              +NN F+AVNQ+ + +    KR PDI+ F+NGLP+VV+ELKN+  E+ ++ ++++Q+ETY
Sbjct  122   PQNNDFLAVNQFTVVNGDYTKR-PDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  183   KDEIAELFVYNQALIISDGIVARLGSLSADFQRFTPWKVVD-EKNKSVRLYFDDELQSLL  241
             K  I++LF +N+ L+ SDGI ++ GSL+A+++RF  W+  D E + S  L     L+ L+
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSL---ASLDVLI  237

Query  242   NGLLKPEDLLDYIRYFVLFERDSVGKTIKKIAAYHQYYGVNEAVDSTIWATSEKGDRRIG  301
             NG+L+P  LLD IRYFVLF+ D+ G   K +AAYHQYY+VN AVD ++ A+S +GD + G
Sbjct  238   NGMLNPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGG  297

Query  302   VMWHTQGSGKSISMLFYAGKLLAQPELKNPTIVVVTDRNDLDGQLFQTF-----SSGKDL  356
             V+WHTQGSGKS++M+F++GKL+    L+NPT+V+VTDRNDLD QL+ TF      SGK+L
Sbjct  298   VIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGL  355

Query  357   IKQTPQQVEDRDQLRQLLAQNEVGGVFFTTIQKFALNEEESRFPVLNERSNIIVISDEAH  416
             ++QTP+Q E R +L+ LL+  E GG+ FTT+QKF  +++E+  + L ER N+IV++DEAH
Sbjct  356   LRQTPKQAETRKELKSLLS-VESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAH  414

Query  417   RSQYGFTQKLHN--GKFQAGYARHLRDALPNASFIGFTGTPISLEDKDTQDVFGRYVSIY  474
             R+QYGF  K ++    ++ GYA+ LRDALPNA+F+GFTGTP++  DK+TQ VFG Y+ +Y
Sbjct  415   RTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVY  474

Query  475   DLQDAVEDGATVPIVYEARQI--KLAENANHDELFAEIDELLEGEKNPKLRLREK-----  527
             D+ +AV DG+TV I YE+R I  +L+++ + DE + +I E  + E + K RL+ K     
Sbjct  475   DMTQAVADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITE--DQEEDVKQRLKSKWSRIE  532

Query  528   -LLGSEARLHDLAVDFVQHFAKRNEVVDSKAMMVVSSRQICVDLYNQIIALHPEWHSDNI  586
              L G+ +R++ LA D++QHF  R++ + +K+M+V  SR+I VDLY++II L PEWHSD+ 
Sbjct  533   ALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDD  592

Query  587   NEGAIKIVMTGSASDASEMQKHVYSKQEKQTLERRFKDPNDPLKVVIVRDMWLTGFDAPC  646
             + G IK+VMTGS+SD++  Q+H+ +K+ +  LE+R KD ND L++VIVRDMWLTGFD P 
Sbjct  593   DKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPS  652

Query  647   CNTMYIDKPMQGHNLMQAIARVNRVFANKSRENGGLIVDYVGLAEELRAATQQYTNSTGK  706
              +TMYIDKPM+GHNLMQAIARVNRVF +K+   GGLIVDYVG+AE L+ A ++YT+S   
Sbjct  653   MHTMYIDKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTESD--  707

Query  707   GQLAEDVQSVFFKMKEQLEFIRTLFATPIEGKTFDVQIALEKDNPNDLLMAIRFAANHIL  766
                                               + Q A++ D++ +L++ +++   + +
Sbjct  708   ----------------------------------QAQTAIDTDKAVELML-LKYDVIQDM  732

Query  767   --SLDQLSFDGKAHEQHWFNKKET--------EPRKKAFLKAAGLVKKGYMLCGTLAEVE  816
               +LD   F++    ++ +   +T        E  ++ F+K+   + K++ LC+T +  +
Sbjct  733   LYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQ  792

Query  817   PYNQEIAFYDAVRAILTK-----REQKG-TGTNERQILLKKLVNQTVYSEGVIDLFDLLE  870
               N+EIAF+ AV+A L K     +E K      E +  +++LV+Q+V +E+VID+++ L 
Sbjct  793   ELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLG  852

Query  871   KPQPQISLLSEEFLQTVKNSPTKNLWVSAMERYLASEIKVKSGTNLTLQKDFERRLKEAL  930
               QP++S+LS++FL+ V     KN+ V  ++R L +++K    TN T+ K F   L +++
Sbjct  853   LEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSI  912

Query  931   NQYHNHNLTVVEILDELFKMSQDFQERlalgkklgltkeelaFYEALSQNQSAKDLMGDE  990
             N+Y+++++    +++EL+++++D+++    G+ LGL  +E+AFY+AL  +++AK  M D 
Sbjct  913   NKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDK  972

Query  991   VLSKLAKEITETLRKSVTIDWQYKEavrarirllvrralQKYKYPPDKQEEAVTYVIKQA  1050
              L  +A E+T T++ ++++DW  +++ +A++R+ VRR L+KY YPPD Q  AV  V+ QA
Sbjct  973   KLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQA  1032

Query  1051  EEIAED  1056
             E +A +
Sbjct  1033  ELMASN  1038

181) SFBM_0021 in NC_015913


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  655 bits (2476),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 421/1040 (41%), Positives = 694/1040 (67%), Gaps = 52/1040 (5%)

Query  3     YTEANYENALIEVFRDTLSYNYLYGPDIS--------RDYSDAIYMDELTPSLKRINKDI  54
             + E + E+ ++E   ++LSY+Y  G +IS        +   D +  + L  +L++IN DI
Sbjct  5     FNEDDLEQVVLE-WLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDI  63

Query  55    PQSAINECINKLRNIEGGTLLDKNRIFMNYLQNGVSVNCFNNGNQESY-LVKLADYNCLE  113
                 I+  I+ L    +  LL++N  F + L NG+ ++ +++  Q    +VK+ D++  +
Sbjct  64    HPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQ  123

Query  114   KNTFTIVNQWTIVENS-EKRPDLILFLNGIPIVVFELKSPSREETSVSEAYNQLRNYMYE  172
             +N F  VNQ T+V+    KRPD++LF+NG+PIVV+ELK+++ E  +V ++Y+QL  Y   
Sbjct  124   NNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  173   IPSLFNYNAFLVMSDLAVSKAGTITSSEDRFMEWKTKDGSYENTS-YAQFDTFIEGMFDK  231
             IP LF +N  LV SD   +KAG++T++ DRFM W++KDG  E++S  A +D +I+GM++ 
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNP  243

Query  232   ARLLDIIKNFICFSEN-----SKIFSAYHQYFAVRKAIKSTL--NALESDGKAGVFWHTQ  284
               LLD+I+ F+ F ++     SKI++AYHQY+AV KA+  +L  ++ ++DGK+GV+WHTQ
Sbjct  244   KTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQ  303

Query  285   GSGKSLSMLFYAHLLCETINSPTILVLTDRNDLDDQLFSQFSKCKD-----FLYQVPNKA  339
             GSGKSL+M+F++  L + +N+PT++++TDRNDLD+QL+S F K K+     +L Q P++A
Sbjct  304   GSGKSLTMVFFSGKLIQMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQA  363

Query  340   ESREHLKKLLAGREANGIIFSTIQKFEESTE-----PLSERKNIIIMADEAHRGQYGLDE  394
             E+R +LK LL+  E+ GI+F+T+QKFE   +     +L+ERKN+I+MADEAHR QYG++ 
Sbjct  364   ETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFNA  422

Query  395   KVDKNTGRISFGIARIIRDNFPNATYIGFTGTPISLKDRSTIEVFGNYIDIYDMTQAVED  454
             K D +   I +G A+ +RD +PNAT++GFTGTP++  D++T  VFGNYID+YDMTQAV D
Sbjct  423   KYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVAD  482

Query  455   GATRPVYYESRVIKLNLDNSILEMIDKEYEILSNNAEIHAIEKSKKELGRLESILGADQT  514
             G+T  +YYESRVI LNL +S L++ D  Y+ ++++ E +  ++ K   +R+E++ GA   
Sbjct  483   GSTVKIYYESRVIPLNLPQS-LDL-DEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPR  540

Query  515   IDSLTRDIVMHYEENRQYELTGKAMIVAYSRPIAMKIYHKILELKPEW----EEK--VYV  568
             +++L++DI+ H+E  RQ  + GK+MIV+ SR IA+ +Y+ I+ LKPEW    ++K  + V
Sbjct  541   VEALAKDIIQHFE-TRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKV  599

Query  569   VMTSGNNDPEDWRKIIGNKRYKDELAKKFKDNGSSFKIAIVVDMWLTGFDVPSLATMYIY  628
             VMT++++DP   ++ IG K+ +  L K+ KD    +++ IV DMWLTGFDVPS+ TMYI 
Sbjct  600   VMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYID  659

Query  629   KPMSGHNLMQAIARVNRVYKNKEGGLIVDYIGIAGALKKAMSDYTKRDKVNYGESDISKI  688
             KPM GHNLMQAIARVNRV+K+K GGLIVDY+GIA +LK A+ +YT  D+ +    D  K 
Sbjct  660   KPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQ-TAIDTDKA  718

Query  689   AYPKFIEKLEVCRALLHGFDYSSFMLKSLTDLTRAKLISGGVNFLSDPSRKEDKKFYIKE  748
                 ++ K +V + +L  +DYS F     ++  R   IS  ++++ + +  E ++F IK 
Sbjct  719   VELMLL-KYDVIQDMLYNLDYSKFNSEKKSE--RYYTISNTMDYVIGLGEDERQRF-IKT  774

Query  749   SLLLRQSVSLCRSILTKDQ-RLESAYFEALRT----LLTRITGENKPLSLKDINKHINDL  803
                L ++ +LC +  T ++   E A+F A+++    LL      +   +  +++ +IN+L
Sbjct  775   VTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQL  834

Query  804   LKESIKSDGIINLFSDIDI---GVSIFDEKFLEEVSNMKEKNLAVEMLKKLLNEQISVYK  860
             + +S+ ++++I+++  +++   ++SI+ + FL +V  +K+KN+AVE+L++LL+ Q+    
Sbjct  835   VSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLM  894

Query  861   RNNIVKSQKFSEMLNKAMRLYINGMITNEEIIEELLKMARDISRSSEEAESLGLSDEEMA  920
             + N   S++FSEML +++  Y +  I    +IEEL+++A+DI +  + ++ LGL+ +E+A
Sbjct  895   KTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIA  954

Query  921   FYDALTRPEAIKDFYTNQELVALTRMLTDSLRRSRTIDWQKKDTARAKMRRMVRKLLKDY  980
             FYDAL   E+ K    ++ L A+++ LT +++ + ++DW K+D+A+AKMR  VR+LLK Y
Sbjct  955   FYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKY  1014

Query  981   DYPPKGLEDAVATVLSQCEI  1000
             +YPP     AV  V+ Q E+
Sbjct  1015  GYPPDLQKMAVEQVVEQAEL  1034

182) hsdR in NC_017294


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  655 bits (2476),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 421/1040 (41%), Positives = 694/1040 (67%), Gaps = 52/1040 (5%)

Query  3     YTEANYENALIEVFRDTLSYNYLYGPDIS--------RDYSDAIYMDELTPSLKRINKDI  54
             + E + E+ ++E   ++LSY+Y  G +IS        +   D +  + L  +L++IN DI
Sbjct  5     FNEDDLEQVVLE-WLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDI  63

Query  55    PQSAINECINKLRNIEGGTLLDKNRIFMNYLQNGVSVNCFNNGNQESY-LVKLADYNCLE  113
                 I+  I+ L    +  LL++N  F + L NG+ ++ +++  Q    +VK+ D++  +
Sbjct  64    HPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQ  123

Query  114   KNTFTIVNQWTIVENS-EKRPDLILFLNGIPIVVFELKSPSREETSVSEAYNQLRNYMYE  172
             +N F  VNQ T+V+    KRPD++LF+NG+PIVV+ELK+++ E  +V ++Y+QL  Y   
Sbjct  124   NNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  173   IPSLFNYNAFLVMSDLAVSKAGTITSSEDRFMEWKTKDGSYENTS-YAQFDTFIEGMFDK  231
             IP LF +N  LV SD   +KAG++T++ DRFM W++KDG  E++S  A +D +I+GM++ 
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNP  243

Query  232   ARLLDIIKNFICFSEN-----SKIFSAYHQYFAVRKAIKSTL--NALESDGKAGVFWHTQ  284
               LLD+I+ F+ F ++     SKI++AYHQY+AV KA+  +L  ++ ++DGK+GV+WHTQ
Sbjct  244   KTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQ  303

Query  285   GSGKSLSMLFYAHLLCETINSPTILVLTDRNDLDDQLFSQFSKCKD-----FLYQVPNKA  339
             GSGKSL+M+F++  L + +N+PT++++TDRNDLD+QL+S F K K+     +L Q P++A
Sbjct  304   GSGKSLTMVFFSGKLIQMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQA  363

Query  340   ESREHLKKLLAGREANGIIFSTIQKFEESTE-----PLSERKNIIIMADEAHRGQYGLDE  394
             E+R +LK LL+  E+ GI+F+T+QKFE   +     +L+ERKN+I+MADEAHR QYG++ 
Sbjct  364   ETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFNA  422

Query  395   KVDKNTGRISFGIARIIRDNFPNATYIGFTGTPISLKDRSTIEVFGNYIDIYDMTQAVED  454
             K D +   I +G A+ +RD +PNAT++GFTGTP++  D++T  VFGNYID+YDMTQAV D
Sbjct  423   KYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVAD  482

Query  455   GATRPVYYESRVIKLNLDNSILEMIDKEYEILSNNAEIHAIEKSKKELGRLESILGADQT  514
             G+T  +YYESRVI LNL +S L++ D  Y+ ++++ E +  ++ K   +R+E++ GA   
Sbjct  483   GSTVKIYYESRVIPLNLPQS-LDL-DEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPR  540

Query  515   IDSLTRDIVMHYEENRQYELTGKAMIVAYSRPIAMKIYHKILELKPEW----EEK--VYV  568
             +++L++DI+ H+E  RQ  + GK+MIV+ SR IA+ +Y+ I+ LKPEW    ++K  + V
Sbjct  541   VEALAKDIIQHFE-TRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKV  599

Query  569   VMTSGNNDPEDWRKIIGNKRYKDELAKKFKDNGSSFKIAIVVDMWLTGFDVPSLATMYIY  628
             VMT++++DP   ++ IG K+ +  L K+ KD    +++ IV DMWLTGFDVPS+ TMYI 
Sbjct  600   VMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYID  659

Query  629   KPMSGHNLMQAIARVNRVYKNKEGGLIVDYIGIAGALKKAMSDYTKRDKVNYGESDISKI  688
             KPM GHNLMQAIARVNRV+K+K GGLIVDY+GIA +LK A+ +YT  D+ +    D  K 
Sbjct  660   KPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQ-TAIDTDKA  718

Query  689   AYPKFIEKLEVCRALLHGFDYSSFMLKSLTDLTRAKLISGGVNFLSDPSRKEDKKFYIKE  748
                 ++ K +V + +L  +DYS F     ++  R   IS  ++++ + +  E ++F IK 
Sbjct  719   VELMLL-KYDVIQDMLYNLDYSKFNSEKKSE--RYYTISNTMDYVIGLGEDERQRF-IKT  774

Query  749   SLLLRQSVSLCRSILTKDQ-RLESAYFEALRT----LLTRITGENKPLSLKDINKHINDL  803
                L ++ +LC +  T ++   E A+F A+++    LL      +   +  +++ +IN+L
Sbjct  775   VTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQL  834

Query  804   LKESIKSDGIINLFSDIDI---GVSIFDEKFLEEVSNMKEKNLAVEMLKKLLNEQISVYK  860
             + +S+ ++++I+++  +++   ++SI+ + FL +V  +K+KN+AVE+L++LL+ Q+    
Sbjct  835   VSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLM  894

Query  861   RNNIVKSQKFSEMLNKAMRLYINGMITNEEIIEELLKMARDISRSSEEAESLGLSDEEMA  920
             + N   S++FSEML +++  Y +  I    +IEEL+++A+DI +  + ++ LGL+ +E+A
Sbjct  895   KTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIA  954

Query  921   FYDALTRPEAIKDFYTNQELVALTRMLTDSLRRSRTIDWQKKDTARAKMRRMVRKLLKDY  980
             FYDAL   E+ K    ++ L A+++ LT +++ + ++DW K+D+A+AKMR  VR+LLK Y
Sbjct  955   FYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKY  1014

Query  981   DYPPKGLEDAVATVLSQCEI  1000
             +YPP     AV  V+ Q E+
Sbjct  1015  GYPPDLQKMAVEQVVEQAEL  1034

183) hsdR in NC_000907


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  654 bits (2471),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 446/1081 (42%), Positives = 718/1081 (67%), Gaps = 80/1081 (7%)

Query  3     NENDIEQLTLQRLQSLGWEYRYGKDLPVHEGKFARGDLSGVVFVEQLREAVRKLNPQLPE  62
             NE+D+EQ+ L++L+SL+ +Y+ G+++++      R    +VV+ E+L  A+RK+N+++  
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  63    SAVDSVVKSATKSDIGDLVVRNQTFYKLLRDGVRVE-YTQNGEQKIEMVRLVDFEHWGNN  121
               ++  +   T     +L+  N TF   L +G+ +E Y ++G+  +E+V++VDFEH  NN
Sbjct  66    RFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNN  125

Query  122   RFVAVNQLEIRSRKGGKRIPDIIGFVNGLPLVVFELKNPLRESADLLQAFNQFETYKDEI  181
              F+AVNQ+ + +    KR PDI+ F+NGLP+VV+ELKN+  E+ ++ ++++Q+ETYK  I
Sbjct  126   DFLAVNQFTVVNGDYTKR-PDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  182   AELFVYNQALIISDGIVARLGSLSADFQRFTPWKVVD-EKNKSARLYFDDELQSLLNGLM  240
             ++LF +N+ L+ SDGI ++ GSL+A+++RF  W+  D E + S+ L     L+ L+NG++
Sbjct  185   PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSL---ASLDVLINGML  241

Query  241   QPEDLLDYIRYFVLFERDSVGKTIKKIAAYHQYYGVNEAVDSTIWATSEKGDRRIGVMWH  300
             +P  LLD IRYFVLF+ D+ G   K +AAYHQYY+VN AVD ++ A+S +GD + GV+WH
Sbjct  242   NPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWH  301

Query  301   TQGSGKSISMLFYAGKLLAQPELKNPTIVVVTDRNDLDGQLFQTF-----SSGKDLIKQT  355
             TQGSGKS++M+F++GKL+    L+NPT+V+VTDRNDLD QL+ TF      SGK+L++QT
Sbjct  302   TQGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQT  359

Query  356   PQQVEDRDQLRQLLAQNEVGGVFFTTIQKFALNEEESRFPILNERNNIIVISDEAHRSQY  415
             P+Q E R +L+ LL+  E GG+ FTT+QKF  +++E+  + L ER+N+IV++DEAHR+QY
Sbjct  360   PKQAETRKELKSLLS-VESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQY  418

Query  416   GFTQKLHN--GKFQTGYARHLRDALPNASFIGFTGTPISLEDKDTQDVFGRYVSIYDLQD  473
             GF  K ++    ++ GYA+ LRDALPNA+F+GFTGTP++  DK+TQ VFG Y+ +YD+ +
Sbjct  419   GFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQ  478

Query  474   AVEDGATVPIVYDDARQIRLN---KKDHDALFAEIDALLEEEPSTSLRLR----EKLLGS  526
             AV DG+TV I Y+ +R I LN     D D  + +I    EE+    L+ +    E L G+
Sbjct  479   AVADGSTVKIYYE-SRVIPLNLPQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGA  537

Query  527   QERLIELAADFVQHFAKRNEVVDSKAMMVVSSRQICVDLYNQIIALHPEWHSDNINEGAI  586
             + R+  LA D++QHF  R++ + +K+M+V  SR+I VDLY++II L PEWHSD+ + G I
Sbjct  538   KPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVI  597

Query  587   KIVMTGSASDTPEMQKHIYSKQEKQTLERRFKDPNDPLKVVIVRDMWLTGFDAPCCNTMY  646
             K+VMTGS+SD    Q+HI +K+ +  LE+R KD ND L++VIVRDMWLTGFD P  +TMY
Sbjct  598   KVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMY  657

Query  647   LDKPMKGHNLMQAIARVNRVFANKSRENGGLIVDYVGLAKELRAATQQYTNSTGKGQLAE  706
             +DKPMKGHNLMQAIARVNRVF +K+   GGLIVDYVG+A  L+ A ++YT+S        
Sbjct  658   IDKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTESD-------  707

Query  707   DVQSVFFKMKEQLEFIRTLFATPIEGKTFDVQAALEKDNPNDLLMAIRFAANHIL--SLD  764
                                          + Q+A++ D++ +L++ +++   + +  +LD
Sbjct  708   -----------------------------QAQTAIDTDKAVELML-LKYDVIQDMLYNLD  737

Query  765   QLSFDGKAHEQHWFNKKET--------EPRKKAFLKTAGLVKKGYMLCGTLAEVEPYNQE  816
                F++    ++ +   +T        E  ++ F+KT   + K++ LC+T +  +  N+E
Sbjct  738   YSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDE  797

Query  817   IAFYDAVRAILTK-----REQKG-TGTNERQILLKKLVNQTVYSEGVIDLFDLLEKPQPQ  870
             IAF+ AV+A L K     +E K      E +  +++LV+Q+V +E+VID+++ L   QP+
Sbjct  798   IAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPD  857

Query  871   ISLLSEEFLQTVKNSPTKNLWVSAMERYLASEIKVKSGTNLTLQKDFERRLKEALNQYHN  930
             +S+LS++FL+ V     KN+ V  ++R L +++K    TN T+ K F   L +++N+Y++
Sbjct  858   LSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNS  917

Query  931   HNLTVVEILDELFKMSQDFQERlalgkklgltkeelaFYEALSQNQSAKDLMGDEVLSKL  990
             +++    +++EL+++++D+++    G+ LGL  +E+AFY+AL  +++AK  M D  L  +
Sbjct  918   RSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAI  977

Query  991   AKEITETLRKSVTIDWQYKEavrarirllvrralQKYKYPPDKQEEAVTYVIKQAEEIAE  1050
             A E+T T++ ++++DW  +++ +A++R+ VRR L+KY YPPD Q  AV  V+ QAE +A 
Sbjct  978   AHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMAS  1037

Query  1051  D  1051
             +
Sbjct  1038  N  1038

184) FP2_17130 in NC_021042


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  650 bits (2458),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 420/1047 (41%), Positives = 691/1047 (66%), Gaps = 51/1047 (4%)

Query  4     FTEDTFEQAVIELFENMGYTHIYAPDMNRTDYS---RPLPDDVLRDCLVRLNRSLPAVA-  59
             F ED +EQ V+E +E+++Y    + +++ T+ +   ++  D VL++   RL+++L  +  
Sbjct  5     FNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHE---RLEKALRKINS  61

Query  60    ------IDEVILKLNDFDAGSLLQKNIIFMDYLQNGITV-KYAVKGEERSSVVKLIDYAD  112
                   I+  I  L    + +LL++N+ F + L NGI +  Y   G+    +VK++D+ +
Sbjct  62    DIHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEH  121

Query  113   ADKNDFYVVNQYTFVENGNNRRPDITLFINGMPLVLMELKSPSKDEVGAENAYNQIRNYM  172
             +++NDF  VNQ+T V+ +  +RPDI LFING+P+V++ELK+++++ VG E++Y+Q+  Y 
Sbjct  122   PQNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYK  181

Query  173   QDIPSMFYYNAICVISDLSTNKAGTITSGLDRFMEWKTKDGDYENTA-YAQFDTFYEGMF  231
               IP +F +N + V SD    KAG++T+  DRFM W++KDG+ E+++  A +D + +GM+
Sbjct  182   MRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGML  241

Query  232   QKARLLDILKNFILFSGDGQKPI-KILAGYHQYFAVRkaieka--kiatktDGKGGVFWH  288
             +   LLD+++ F+LF +DG+  I KILA+YHQY+AV KA+++A    + + DGKGGV+WH
Sbjct  242   NPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWH  301

Query  289   TQGSGKSLSMVFYAHLLQEALDSPTIVVMTDRIDLDDQLYTQFARCAP-----FLRQTPV  343
             TQGSGKSL+MVF++  L + L++PT+V++TDR DLD+QLY+ F +        +LRQTP 
Sbjct  302   TQGSGKSLTMVFFSGKLIQMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPK  361

Query  344   QATSKENLSKLLDGRKANGIIFTTMFKFERGEK-----PLSERRNIVVMADEAHRGQYGF  398
             QA ++ +L  LL    + GI+FTTM KFE  ++     +L+ER+N++VMADEAHR QYGF
Sbjct  362   QAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGF  420

Query  399   DEKIVIKENERGEKEAHTVIGNARIIHDALPNATYIGFTGTPISAKDRNTREVFGDYIDV  458
             + K        ++K      G A+ ++DALPNAT++GFTGTP+++ D+NT+ VFG+YIDV
Sbjct  421   NAKY-------DDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDV  473

Query  459   YDMTQAVEDGATRPVYYESRVIKLHLDQNTLALIDATYDALEQQSDAATIEKSKKMLGQM  518
             YDMTQAV DG+T  +YYESRVI L+L Q +L L D +Y+ + ++ +    ++ K   +++
Sbjct  474   YDMTQAVADGSTVKIYYESRVIPLNLPQ-SLDL-DEAYNDITEDQEEDVKQRLKSKWSRI  531

Query  519   ESVLGADSTIQSLCEDIVDHYEKYRANLLTGKAMIVAYSRPIAMKIYRKLLELRPTWNEK  578
             E++ GA + +++L  DI++H+E  R + + GK+MIV+ SR IA+ +Y  ++ L+P W+  
Sbjct  532   EALAGAKPRVEALAKDIIQHFET-RQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSD  590

Query  579   ------IGVVMTGGNNDPEDWKEIIGTKSHKEELARKFKDNDDPMKIAIVVDMWLTGFDV  632
                   I VVMTG+++DP   +  IG K ++  L ++ KD +D +++ IV DMWLTGFDV
Sbjct  591   DDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDV  650

Query  633   PSLATMYVYKPMHGYNLMQAIARVNRVFKDKEGGLIVDYVGIASALKAAMKEYTKRDQSR  692
             PS+ TMY+ KPM G NLMQAIARVNRVFKDK GGLIVDYVGIA +LK A+KEYT  DQ++
Sbjct  651   PSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQ  710

Query  693   YGDMDIAKVAYPKFQEKLQVCKDLLHGFDFSGFIGGSPLMMAKLVTGGVNFVLDAKAPKR  752
                +D  K     +  K +V +D+L  +D+S F +         ++  +++V++     R
Sbjct  711   -TAIDTDKAVELMLL-KYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDER  768

Query  753   KDLFLREALLLKQSHSLCSSMTTEQE-RHEAAYMEAVRSTVVKITYGGSGGKT-LSLKEI  810
             +  F++    L ++ +LC++  T QE  +E A+  AV++ +VK+      GKT  +  E+
Sbjct  769   QR-FIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEV  827

Query  811   NAQINELLKASIQSQGVISLFDSKQADE-NISLFDPAVLDEISKMKEKNIAVEILKKLMA  869
             +A+IN+L+  S+ +++VI ++++   ++ ++S++    L ++  +K+KN+AVE+L++L+ 
Sbjct  828   EAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLK  887

Query  870   EQVSLYKRTNVVQSQKFSEKITQLMNSYYNGLITNEEVIKELLKTAQEITEQYNNGKKLG  929
              QV    +TN   S++FSE + + +N Y +  I    VI EL++ A++I ++ + G+ LG
Sbjct  888   GQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELG  947

Query  930   LTQEELAFYDALTKPENIKDFYQNNELIDLTRELTEMLRKNRTIDWQKKETARASMRKMV  989
             L  +E+AFYDAL   E  K   +++ L  +++ELT  ++ N ++DW K+++A+A MR  V
Sbjct  948   LNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAV  1007

Query  990   KHLLKKYKYPPEDYDTAISTVISQCEM  1016
             ++LLKKY YPP+    A+  V+ Q E+
Sbjct  1008  RRLLKKYGYPPDLQKMAVEQVVEQAEL  1034

185) HICON_18090 in NC_014922


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  649 bits (2455),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 445/1088 (41%), Positives = 730/1088 (68%), Gaps = 89/1088 (8%)

Query  9     NENDIEQLTLQRLQPLGWEYRYGKDLPVHEGKFARGDLSGVVFVEQLREAVRKLNPQLPE  68
             NE+D+EQ+ L++L++L+ +Y+ G+++++      R    +VV+ E+L  A+RK+N+++  
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  69    SAVDSVVKSATKSDIGDLVVRNQAFYKLLRDGVRVEYQAPNSHGQNEQKIEMARLVDFEH  128
               ++  +   T     +L+  N +F   L +G+ +E    + +++ +  +E+ ++VDFEH
Sbjct  66    RFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIE----DYDDEGQSIVEIVKIVDFEH  121

Query  129   WGNNRFVAVNQLEIRSRKGGKRIPDIIGFVNGLPLVVFELKNPLRESADLLQAFNQFETY  188
               NN F+AVNQ+ + +    KR PDI+ F+NGLP+VV+ELKN+  E+ ++ ++++Q+ETY
Sbjct  122   PQNNDFLAVNQFTVVNGDYTKR-PDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  189   KDEIAELFVYNQALIISDGIVALLGSLSADFQRFTPWKVVD-EKNKSARLYFDDELQSLL  247
             K  I++LF +N+ L+ SDGI +  GSL+A+++RF  W+  D E + S+ L     L+ L+
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSL---ASLDVLI  237

Query  248   NGLLKPEDLLDYIRYFVLFERDSVGKTIKKIAAYHQYYGVNEAVDSTIWATSEQGDRRIG  307
             NG+L+P  LLD IRYFVLF+ D+ G   K +AAYHQYY+VN AVD ++ A+S QGD + G
Sbjct  238   NGMLNPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGG  297

Query  308   VMWHTQGSGKSISMLFYAGKLLAQPELKNPTIVVVTDRNDLDGQLFQTF-----SSGKDL  362
             V+WHTQGSGKS++M+F++GKL+    L+NPT+V+VTDRNDLD QL+ TF      SGK+L
Sbjct  298   VIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGL  355

Query  363   IKQTPQQVEDRDQLRQLLAQNEVGGVFFTTIQKFALNEEESRFPILNERSNIIVISDEAH  422
             ++QTP+Q E R +L+ LL+  E GG+ FTT+QKF  +++E+  + L ER N+IV++DEAH
Sbjct  356   LRQTPKQAETRKELKSLLS-VESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAH  414

Query  423   RSQYGFTQKLHN--GKFQTGYARHLRDALPNASFIGFTGTPISLEDKDTQDVFGRYVSIY  480
             R+QYGF  K ++    ++ GYA+ LRDALPNA+F+GFTGTP++  DK+TQ VFG Y+ +Y
Sbjct  415   RTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVY  474

Query  481   DLQDAVEDGATVPIVYEARQI--KLAENANHDELFAEIDELLEGEENPKLRLREK-----  533
             D+ +AV DG+TV I YE+R I  +L+++ + DE + +I E  + EE+ K RL+ K     
Sbjct  475   DMTQAVADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITE--DQEEDVKQRLKSKWSRIE  532

Query  534   -LLGSEARLHDLAVDFVQHFAKRNEvvdsksmmvvssRQICVDLYNQIIALHPEWHSDNI  592
              L G+ +R++ LA D++QHF  R++ + +K+M+V  SR+I VDLY++II L PEWHSD+ 
Sbjct  533   ALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDD  592

Query  593   NEGAIKIVMTGSASDASEMQKHVYSKQEKQTLERRFKDPNDPLKVVIVRDMWLTGFDAPC  652
             + G IK+VMTGS+SD++  Q+H+ +K+ +  LE+R KD ND L++VIVRDMWLTGFD P 
Sbjct  593   DKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPS  652

Query  653   CNTMYLDKPMKGHNLMQAIARVNRVFRNKSRENGGLIVDYVGIADELKDATQQYTNSQGK  712
              +TMY+DKPMKGHNLMQAIARVNRVF++K+   GGLIVDYVGIA+ LK+A ++YT+S+  
Sbjct  653   MHTMYIDKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTESD--  707

Query  713   GKLADSVIDVFFKMKEHLEVIRSLFTTPVEGKTFDVQTVLEKDNPNELLMAIRFAANHIL  772
                                               + QT ++ D++ EL++ +++   + +
Sbjct  708   ----------------------------------QAQTAIDTDKAVELML-LKYDVIQDM  732

Query  773   --SLDQLSFDGKAHEQHWFNKKET--------EPRKKAFLKAAGLVKKGYMLCGALAEVE  822
               +LD   F++    ++ +   +T        E  ++ F+K+   + K++ LC++ +  +
Sbjct  733   LYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQ  792

Query  823   PYNQEIAFYDAVRAILTK--------REQKGTGTNERQILLKKLVNQTVYSEGVIDLFDL  874
               N+EIAF+ AV+A L K        + +K  +  E +I  ++LV+Q+V +E+VID+++ 
Sbjct  793   ELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEI--NQLVSQSVVTEDVIDVYQT  850

Query  875   LEKPQPQISLLSEEFLQTVKNSPTKNLWVTAMERYLASEIKVKSGTNLTLQKDFEQRLKE  934
             L   QP++S+LS++FL+ V     KN+ V  ++R L +++K    TN T+ K F + L +
Sbjct  851   LGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGN  910

Query  935   ALNQYHNHNLTVVEILDQLFKMSQDFQERlalgkklgltkeelaFYEALSQNQSAKDLMG  994
             ++N+Y+++++    ++++L+++++D+++    G+ LGL  +E+AFY+AL  +++AK  M 
Sbjct  911   SINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAME  970

Query  995   DEVLSKLAKEITETLRKSVTIDWQYKEavrarirllvrralQKYKYPPDKQEEAVTYVIK  1054
             D  L  +A E+T T++ ++++DW  +++ +A++R+ VRR L+KY YPPD Q  AV  V+ 
Sbjct  971   DKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVE  1030

Query  1055  QAEEIAED  1062
             QAE +A +
Sbjct  1031  QAELMASN  1038

186) Desru_3588 in NC_015589


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  648 bits (2451),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 416/1011 (42%), Positives = 677/1011 (67%), Gaps = 52/1011 (5%)

Query  2     PYTEANYENAVLEVFRDTLGYGYSYGPDVV--------RDYSDPLYTDELLPALRRVNSK  53
              + E + E+ VLE   ++L+Y+Y  G ++         +   D +  + L  ALR++NS 
Sbjct  4     QFNEDDLEQVVLE-WLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSD  62

Query  54    LPEVALSEAVYKLRNFEGGTVLQKNVQFMDYLQNGVSV-NYYDKGEQRSALVQLVDFDNI  112
             +    +  A+  L    +  +L++N+ F + L NG+ + +Y D G+    +V++VDF++ 
Sbjct  63    IHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHP  122

Query  113   KQNTFTVANQWTITENS-EKRPDVIVFLNGLPVVVFELKSPSREETDASEAYRQLRNYMK  171
             ++N F   NQ T+ +    KRPD+++F+NGLP+VV+ELK+++ E  +  ++Y+QL  Y  
Sbjct  123   QNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKM  182

Query  172   EIPSLFIYNAFLVMSDLATSKAGTITADEDRFMEWKTKDGSYENTQ-YAQFDTFIEGMFE  230
              IP LF +N  LV SD   +KAG++TA+ DRFM W++KDG  E++   A +D +I+GM++
Sbjct  183   RIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLN  242

Query  231   KGRLLDIIKNFICFSGDAK-----ILGAYHQYFAVRKAITST--AKATETDGRGGVFWHT  283
                LLD+I+ F+ F +D+K     IL+AYHQY+AV KA+  +  A + + DG+GGV+WHT
Sbjct  243   PKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHT  302

Query  284   QGSGKSLSMVFYAHLLQEILNSPTIVVLTDRNDLDDQLFGQFAKCAD-----FLRQTPQQ  338
             QGSGKSL+MVF++  L ++LN+PT+V++TDRNDLD+QL++ F K  +     +LRQTP+Q
Sbjct  303   QGSGKSLTMVFFSGKLIQMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQ  362

Query  339   AESRIHLKELLAGRQANGIIFTTMQKFEESSE-----ALSDRRNIIVMADEAHRGQYGLE  393
             AE+R +LK LL+  ++ GI+FTTMQKFE   +     AL++R+N+IVMADEAHR QYG++
Sbjct  363   AETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFN  421

Query  394   EKVDAKTGRVILGTARIIRDSLPNATYIGFTGTPISSKDRSTIEVFGNYIDIYDMTQAVE  453
              K D K   +  G A+ +RD+LPNAT++GFTGTP++S D++T  VFGNYID+YDMTQAV 
Sbjct  422   AKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVA  481

Query  454   DGATRPVYYESRVIHLKLDEDVLQLIDAEYDIMGENAEPYAIEKSKKELGQMESILGADQ  513
             DG+T  +YYESRVI L+L +  L+L D  Y+ + E+ E    ++ K   +++E++ GA  
Sbjct  482   DGSTVKIYYESRVIPLNLPQS-LDL-DEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKP  539

Query  514   TITALCEDIVKHYEENRQYELTGKAMIVAYSRPIAMKIYHKILQMRPDWTEK------LG  567
              + AL  DI++H+E  RQ  + GK+MIV+ SR IA+ +Y+ I++++P+W         + 
Sbjct  540   RVEALAKDIIQHFE-TRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIK  598

Query  568   VVMTSGNNDPEEWREIIGNKRHKDEMAKKFKDNNSPLKIAIVVDMWLTGFDVPSLATMYV  627
             VVMT++++DP   +  IG K+++  + K+ KD N  L++ IV DMWLTGFDVPS+ TMY+
Sbjct  599   VVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYI  658

Query  628   YKPMAGHNLMQAIARVNRVYKNKEGGLVVDYVGIASALKQAMNDYTNRDKQNYGEQDIAK  687
              KPM GHNLMQAIARVNRV+K+K GGL+VDYVGIA +LK+A+++YT+ D+ + + +  + 
Sbjct  659   DKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAID--TD  716

Query  688   TALPKFIEKLEVCRDLFHGFDYAGFMDAKATDLARAKAISGGVNFLSGIDKEKQRESFVK  747
              A+   + K +V +D++  +DY+ F   K ++  R  +IS  ++++ G++ E +R+ F+K
Sbjct  717   KAVELMLLKYDVIQDMLYNLDYSKFNSEKKSE--RYYTISNTMDYVIGLG-EDERQRFIK  773

Query  748   EAMLLRQALSLCRSLLKPEQ-RFEAAYFEAVRTLLTRI---TGEGKP-LSLKEINARVNE  802
                 L +A++LC +   +++   E A+F AV++ L ++     EGK   +  E++A +N+
Sbjct  774   TVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQ  833

Query  803   LLKASIQSEGVINLFSDI---DTGFSLFDPKFLEEIAKMKERNLAVEILKKLLAEQVSLY  859
             L+  S+ +E+VI+++  +   + ++S++   FL ++  +K++N+AVE+L++LL  QV   
Sbjct  834   LVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSL  893

Query  860   RRTNLVKSEKFSEMLSRAMKAYLNGMLSNEEVIAELMKMAKDMANAQAEGDALGLNDEEL  919
              +TN   S +FSEML+ +++ Y +  +    VI EL+++AKD+ + Q  G+ LGLN +E+
Sbjct  894   MKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEI  953

Query  920   AFYDALTRPEAVKDFYQNEELVAMTHELTDMLRKNRTIDWQKKESARAGMR  970
             AFYDAL   E+ K   ++  L A++HELT  ++ N ++DW K++SA+A MR
Sbjct  954   AFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMR  1004

187) HMPREF0389_01038 in NC_016630


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  648 bits (2449),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 427/1045 (41%), Positives = 698/1045 (67%), Gaps = 51/1045 (4%)

Query  4     FIEASYENSIIELFQNNLGYEYVYGPDIERDFYSP--------LYEDVLVDSLYRLNRGL  55
             F E   E+ ++E +++ L+Y+Y  G +I     +P        + ++ L  +L ++N ++
Sbjct  5     FNEDDLEQVVLEWLES-LSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDI  63

Query  56    PDNAIQDALYKLRNFENGELVQKNAIFMDYLQNGIPVR-YFVSGEERSSIIYLVDYKNVE  114
                 I+ A+  L    + +L+++N  F + L NGI +  Y   G+    I+ +VD+ + +
Sbjct  64    HPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQ  123

Query  115   NNSFIVANQWTFIENS-NKRPDVILFLNGLPVVLVELKSPSREETDASEAYRQLRNYMHE  173
             NN F+  NQ T ++    KRPD++LF+NGLP+V++ELK+++ E  +  ++Y+QL  Y   
Sbjct  124   NNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  174   IPSMFIYNAICVMSDQLISKAGTITSGEDRFMEWKTKDGNYENTQ-YAQFDTFFEGMFQK  232
             IP +F +N + V SD + +KAG++T+  DRFM W++KDG+ E++   A +D +++GM++ 
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNP  243

Query  233   ERLLDIIKNFICFSNEGINTF-KILAGYHQYFAVRKAIEST--KHAIITDGKGGVFWHTQ  289
               LLD+I+ F+ F ++G   + KILA+YHQY+AV KA++ +    +   DGKGGV+WHTQ
Sbjct  244   KTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQ  303

Query  290   GSGKSLSMVFYAHLLQEALESPTIVVLTDRNDLDDQLYSQFAKCKD-----FLRQEPLQA  344
             GSGKSL+MVF++  L + L++PT+V++TDRNDLD+QLYS F K K+     +LRQ P QA
Sbjct  304   GSGKSLTMVFFSGKLIQMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQA  363

Query  345   ESRENLKTLLAGRKANGIIFTTMQKFEESNE-----PLSERRNIIVMADEAHRGQYGLTE  399
             E+R +LK+LL+   + GI+FTTMQKFE  ++     +L+ER+N+IVMADEAHR QYG+  
Sbjct  364   ETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFNA  422

Query  400   KIKITKNEDGDEVAKRIIGTARIIRNTLPNATYIGFTGTPISAKDRSTREVFGDYIDIYD  459
             K     ++ G+ +     G A+ +R++LPNAT++GFTGTP+++ D++T+ VFG+YID+YD
Sbjct  423   KY----DDKGEGIK---YGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYD  475

Query  460   MTQAVEDGATRPVYYESRVIKLNLDETTLKLIDAEYDLMALNADDEVIEKSKRELGQMEA  519
             MTQAV DG+T  +YYESRVI LNL ++ L L D  Y+ ++ + +++V ++ K   +++EA
Sbjct  476   MTQAVADGSTVKIYYESRVIPLNLPQS-LDL-DEAYNDITEDQEEDVKQRLKSKWSRIEA  533

Query  520   VLGNDNTINSLVCDIIDHYENNRENLLTGKAMIVAYSRPIAMKIYKKILKLRPAWTEK--  577
             + G    +++L  DII+H+E  R++ + GK+MIV+ SR IA+ +Y  I++L+P W     
Sbjct  534   LAGAKPRVEALAKDIIQHFET-RQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDD  592

Query  578   ----VEVVMTSGNNDPEEWRQIIGNKHHKNELAKKFKDNSSLMKIAIVVDMWLTGFDVPS  633
                 + VVMT++++DP   ++ IG K +++ L K+ KD +  +++ IV DMWLTGFDVPS
Sbjct  593   DKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPS  652

Query  634   LATMYVYKPMSGHNLMQAIARVNRVFQDKEGGLVVDYVGIATALKQAMNDYTLRDKKNYG  693
             + TMY+ KPM GHNLMQAIARVNRVF+DK GGL+VDYVGIA +LK+A+++YT  D+ +  
Sbjct  653   MHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQ-T  711

Query  694   DTDVAKVAYPKFLEKLSVCRDKFHGYDYTKFINGTDLERAKTISGAVNFIMDREKVDDKD  753
               D  K     +L K  V +D +   DY+KF +    ER  TIS +++++++    D+++
Sbjct  712   AIDTDKAVELMLL-KYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGE-DERQ  769

Query  754   SFVKEALMLHQALSLCSS-LVDKDSRFEAAFFEAVRVLVLRLTNTGVDKKI--SLPEMNA  810
              F+K    L +A++LC++    ++   E AFF AV+  +++L +   + K   + +E++A
Sbjct  770   RFIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEA  829

Query  811   RINELLKQSIKSDGVINLFSDI---KEEFSLFDPKFLQEVANMKEKNLAVELLKKLIAEQ  867
              IN+L+ QS+ +++VI+++  +   + ++S++   FL++V  +K+KN+AVELL++L+  Q
Sbjct  830   EINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQ  889

Query  868   VSVYRRTNIVKSEKFSEIMQRSLNAYLNGMLTNEEVIEEMLRLAKQIAAAHQEGDKLGLT  927
             V    +TN   S +FSE++  S+N Y +  +    VIEE+++LAK+I   +Q G+ LGL 
Sbjct  890   VKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLN  949

Query  928   ADELAFYDALTKPQAIKDFYENEELIAITKELADTLRKNKTIDWQKRESARAKMRMlikk  987
             +DE+AFYDAL   ++ K   E+  L AI+ EL+ T++ N ++DW KR+SA+AKMR+ +++
Sbjct  950   SDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRR  1009

Query  988   llkkhkYPPEGMDDAVQTVMKQCEL  1012
             LLKK  YPP+    AV+ V+ Q EL
Sbjct  1010  LLKKYGYPPDLQKMAVEQVVEQAEL  1034

188) Alfi_1812 in NC_018011


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  642 bits (2428),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 435/1045 (42%), Positives = 698/1045 (67%), Gaps = 56/1045 (5%)

Query  2     HFTEDDFENAILELFREQLGYDYVYGPNV-MRDYA-------EPLYVEVLEAVLPQINRG  53
             +F EDD+E+ +LE + E L+YDY  G ++ M + A       + +  E LE  L +IN +
Sbjct  4     QFNEDDLEQVVLEWL-ESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSD  62

Query  54    LPQAAIDEAMVKIRTYEGGTLVQKNELFTDYLQNGVAVNYFDGREQCSAN-VRLVDYDSP  112
             +    I+ A+  +    +  L+++N  F + L NG+ ++ +D+  Q   + V++VD++ P
Sbjct  63    IHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHP  122

Query  113   LHNRFTIANQWTV-DGHSVRRADMIVFVNGLPLVVVELKSPSRENTDVSEAYAQLRNYMQ  171
              +N F   NQ TV +G+  +R+D+++F+NGLP+VV+ELK+++ E  +V ++Y QL  Y  
Sbjct  123   QNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKM  182

Query  172   EIPSLFIYNAFCVMSDQAMTKAGTITAGEDRFMQWKTVDGSYEDTHS-ANFDVLFAGMFE  230
              IP LF +N   V SD   TKAG++TA  DRFM W++ DG  E + S A++DVL+ GM++
Sbjct  183   RIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLN  242

Query  231   KTRFVELLRNFVCYSKDGKQDI-KILSAYHQFYAVHKAVLSTV--KAAETDGRGGVFWHT  287
                +++L+R FV +  DGK +I KIL+AYHQ+YAV+KAV  ++   +++ DG+GGV+WHT
Sbjct  243   PKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHT  302

Query  288   QGSGKSLSMVFFAKQLQQAMSSPTIVVLTDRNDLDGQLYRQFA-----CCRDFLRQTPVQ  342
             QGSGKSL+MVFF+ +L Q +++PT+V++TDRNDLD QLY  F        +++LRQTP Q
Sbjct  303   QGSGKSLTMVFFSGKLIQMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQ  362

Query  343   AESRAHLRELLAGREANGIFFSTMQKFEESEE-----PLSTRRNIVVMADEAHRSQYGLE  397
             AE+R +L+ LL+  E+ GI F+TMQKFE  ++     +L+ R+N++VMADEAHR+QYG++
Sbjct  363   AETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFN  421

Query  398   ERVRMVTDADGVTQAKVVIGAARLVRNALPNATYIGFTGTPISQKDRSTREVFGDYIDVY  457
              +      ++G+       G A+ +R+ALPNAT++GFTGTP++  D++T+ VFG+YIDVY
Sbjct  422   AKYD--DKGEGIK-----YGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVY  474

Query  458   DMTQSVEDGATRPVFYESRVINLKLDEQSLRRIdaeydamaeeaeeyVIEKSKRELGRLD  517
             DMTQ+V DG+T  ++YESRVI L+L  QSL  +D  Y+ ++E+ EE V ++ K   +R++
Sbjct  475   DMTQAVADGSTVKIYYESRVIPLNL-PQSLD-LDEAYNDITEDQEEDVKQRLKSKWSRIE  532

Query  518   SILGADATVASLCEDIVKHYEEFRQYEQTGKAMIVAYSRPIAIKIYRRILEMRPVWSDK-  576
             ++ GA + V +L  DI++H+E  RQ    GK+MIV+ SR IA+ +Y  I+ ++P W    
Sbjct  533   ALAGAKPRVEALAKDIIQHFET-RQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDD  591

Query  577   -----LAVVMTSGNKDPEDWRAIIGNDSHKKELEKRFKDNDSSLKIVIVVDMWLTGFDVP  631
                  + VVMT+++ DP   +  IG   ++  LEKR KD +  L++VIV DMWLTGFDVP
Sbjct  592   DDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVP  651

Query  632   SLSTMYVYKPMSGHNLMQAIARVNRVFGDKQGGLVVDYVGIASALKTAMNDYTYRDRKNY  691
             S+ TMY+ KPM GHNLMQAIARVNRVF DK GGL+VDYVGIA +LK A+++YT  D+   
Sbjct  652   SMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQ---  708

Query  692   GDTDVAKTAYPEFQK-KLDVCRDLMYGFDYGAFFGKSDLERAKAISGGVDFMQSPERMET  750
             ++T +      E+   K DV +D++Y +DY+ F +    ER  +IS  +D++ +    E 
Sbjct  709   AQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDER  768

Query  751   KKLYIKEALLLRQALSLCQSLLNYEQ-RIEAAYFEAVRTLLTRV-----EAKGKISFREI  804
             ++ +IK    L +A++LC +    ++   E A+F AV++ L ++     E+K + +  E+
Sbjct  769   QR-FIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEV  827

Query  805   NGRINELLKQSIKSEGVINLFSDI---KEEFSLFDSKFLEEVARMKERNFAVELLRRLIA  861
             ++ IN+L+ QS+ +E+VI+++  +   + ++S++   FL +V  +K++N AVELL RL+ 
Sbjct  828   EAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLK  887

Query  862   EQVQLYQRTNTVRAEKFSEILADAMSRYLKGMLTNEEVIEELLKIAREIVHGEKAGKSLN  921
              QV+   +TN+  + +FSE+L++++++Y    +    VIEEL+++A++I + ++ G+ L 
Sbjct  888   GQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELG  947

Query  922   LNSEELAFYDALTKPEAVKDFYSNDQLVAITRELTDALRRNKTIDWNMKESARAGMRRIV  981
             LNS+E+AFYDAL   E+ K    + +L AI++ELT +++ N ++DW+ ++SA+A MR  V
Sbjct  948   LNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAV  1007

Query  982   KRLLKKYNYPPAGQEDALNTIMEQC  1006
             +RLLKKY YPP  Q  A++ ++EQ 
Sbjct  1008  RRLLKKYGYPPDLQKMAVEQVVEQA  1032

189) Dtpsy_1863 in NC_011992


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  640 bits (2418),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 387/845 (46%), Positives = 590/845 (70%), Gaps = 64/845 (7%)

Query  2    TEDQLEKETLGWLADVGYSLHNGLDIAQDGINPQRADYRQVVLSFRLREAIQRLNPHIPT  61
             ED+LE+  L WL  ++Y   +G +I+  G+ P+R   ++VVL  RL  A++++N++I  
Sbjct  6    NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  62   AAREDALHRVLDLG-IPSLLSANRAFHKLLVGGVPVQ-YQKEGETRGDFVRLVDWSEASR  119
               E A+H  L L   P+LL  N +FH  L+ G+ ++ Y+ EG++  ++V++VD  ++  
Sbjct  66   RFIEKAIHE-LTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQN  124

Query  120  NEFWAVNQFTIKGPHHTRRPDIILFVNGLPLVLLELKNPADQAADIWKAYDQIQTYKEHI  179
            N+F AVNQFT+   + T+RPDI+LF+NGLP+V++ELKN+++++ ++  +Y+Q++TYK +I
Sbjct  125  NDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRI  184

Query  180  PDVFQYNEVLVISDGTEARLGSLSANAERFMQWRTIDGVNLDPLGEFNELETLVRGALAP  239
            P++F +NEVLV SDG +++ GSL+AN +RFM WR+ DG + ++ + +  L+ L+ G L P
Sbjct  185  PQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDG-ETESSSSLASLDVLINGMLNP  243

Query  240  QYLLDYLRYFVLFEDDGS--LVKKIAGYHQFHAVRSAIAHVVAASRPDSAANQRGKGGVV  297
            + LLD +RYFVLF+DDG   + K +A+YHQ+ AV  A+ + + AS  ++     GKGGV+
Sbjct  244  KTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGD----GKGGVI  299

Query  298  WHTQGSGKSITMTCFAARVMQEPAMANPTIVVITDRNDLDGQLFGVF-----SLAQDLLR  352
            WHTQGSGKS+TM  F+++++Q   + NPT+V++TDRNDLD QL++ F       +++LLR
Sbjct  300  WHTQGSGKSLTMVFFSGKLIQ--MLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLR  357

Query  353  EQPAQASTRQQLRQLLSNRPSGGIVFATIQKFMPGEDEDMFPVLSERHNIVVIADEAHRT  412
            + P QA TR++L+ LLS   SGGIVF+T+QKF P ++E + + L+ER N++V+ADEAHRT
Sbjct  358  QTPKQAETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRT  416

Query  413  QYGFEAKLKTIKNKGASAAKALVLADGETSGAAVTADFAEPEYLTKYQVGYAQHLRDALP  472
            QYGF+AK                    +  G ++           KY  GYA+ LRDALP
Sbjct  417  QYGFNAKY-------------------DDKGEGI-----------KY--GYAKYLRDALP  444

Query  473  HATFVAFTGTPVSSTDRDTRAVFGDYISVYDMQQAKEDGATVAIYYESRLAKLRLKEEDL  532
            +ATFV+FTGTPV+STD++T+ VFG+YI VYDM QA  DG+TV IYYESR+  L L  + L
Sbjct  445  NATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADGSTVKIYYESRVIPLNL-PQSL  503

Query  533  SFLddevdelaedeeeSTQAQLKSRWAALEKVVGATPRVASVAADLVAHFEERNKTQDGK  592
              LD+  ++++ED+EE  + +LKS+W+ +E + GA PRV ++A D++ HFE R+++  GK
Sbjct  504  D-LDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMKGK  562

Query  593  AMVVAMSRDICVHLYNEIVKLRPDWHDSDPEKGAIKIVMTGSASDKALLRPHIYSAQVKK  652
            +M+V+MSR I V+LY+EI++L+P+WH  D +KG IK+VMTGS+SD + ++ HI + + + 
Sbjct  563  GMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRS  622

Query  653  RLEKRFKDPTDPLRLVIVRDMWLTGFDAPCVHTMYVDKPMKGHNLMQAIARVNRVFKDKQ  712
             LEKR KD  D L+LVIVRDMWLTGFD P +HTMY+DKPMKGHNLMQAIARVNRVFKDK 
Sbjct  623  VLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKP  682

Query  713  GGLVVDYIGIGNELKAAMKEYTASQGRGKPTVDAHEALSVLLEKMDVLRAMLHGYDYSGF  772
            GGL+VDY+GI++ LK A+KEYT S+ +++ ++D++ A+ ++L K DV++ ML   DYS F
Sbjct  683  GGLIVDYVGIAESLKEALKEYTESD-QAQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKF  741

Query  773  LTGGHK----TLAGAANHVLGIKSEGKDSKRDGKKRFADSALAMSKAFSLCCTLDEAKAL  828
             +        T++ + + V+G+  + ++       RF  +   ++KAF+LC T   A+ L
Sbjct  742  NSEKKSERYYTISNTMDYVIGLGEDERQ-------RFIKTVTELGKAFALCATEPTAQEL  794

Query  829  REEVP  833
             +E++
Sbjct  795  NDEIA  799

190) HIB_14360 in NC_016809


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  638 bits (2411),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 443/1088 (41%), Positives = 729/1088 (68%), Gaps = 89/1088 (8%)

Query  3     NENDIKQLTLQRLQSLGWEYRYGKDLPVHEGKFARGDLSGVVFVEQLREAVRKLNPQLPE  62
             NE+D+ Q+ L++L+SL+ +Y+ G+++++      R    +VV+ E+L  A+RK+N+++  
Sbjct  6     NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  63    SAVDSVVKSATKSDIGDLVVRNQAFYKLLRDGVRVEYQAPNSHGQNEQKIEMARLVDFEH  122
               ++  +   T     +L+  N +F   L +G+ +E    + +++ +  +E+ ++VDFEH
Sbjct  66    RFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIE----DYDDEGQSIVEIVKIVDFEH  121

Query  123   WGNNRFVAVNQLEIRSRKGGKRIPDITGFVNGLPLVVFELKNPLRESADLLQAFNQFETY  182
               NN F+AVNQ+ + +    KR PDI  F+NGLP+VV+ELKN+  E+ ++ ++++Q+ETY
Sbjct  122   PQNNDFLAVNQFTVVNGDYTKR-PDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETY  180

Query  183   KDEIAELFVYNQALIISDGIVARLGSLSADFQRFTPWKVVD-EKNKSARLYFDDELQSll  241
             K  I++LF +N+ L+ SDGI ++ GSL+A+++RF  W+  D E + S+ L     L+ L+
Sbjct  181   KMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSL---ASLDVLI  237

Query  242   ngllkpkdlldYIRYFVLFERDSVGKTIKKIAAYHQYYGVNEAVESTIFATSEQGDKRIG  301
             NG+L+PK LLD IRYFVLF+ D+ G   K +AAYHQYY+VN AV+ +++A+S QGD + G
Sbjct  238   NGMLNPKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGG  297

Query  302   VMWHTQGSGKSISMLFYAGKLLAQPELKNPTIVVVTDRNDLDGQLFQTF-----SSGKDL  356
             V+WHTQGSGKS++M+F++GKL+    L+NPT+V+VTDRNDLD QL+ TF      SGK+L
Sbjct  298   VIWHTQGSGKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGL  355

Query  357   IKQTPQQVEDRDQLRQLLAQNEVGGVFFTTIQKFALNEEESRFPILNERNNIIVISDEAH  416
             ++QTP+Q E R +L+ LL+  E GG+ FTT+QKF  +++E+  + L ER+N+IV++DEAH
Sbjct  356   LRQTPKQAETRKELKSLLS-VESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAH  414

Query  417   RSQYGFTQKLHN--GKFQTGYARHLRDALPNASFIGFTGTPISLEDKDTQDVFGRYVSIY  474
             R+QYGF  K ++    ++ GYA+ LRDALPNA+F+GFTGTP++  DK+TQ VFG Y+ +Y
Sbjct  415   RTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVY  474

Query  475   DLQDAVEDGATVPIVYEAR--QIKLAENANHDELFAEIDELLEGEKNPKLRLREK-----  527
             D+ +AV DG+TV I YE+R   ++L+++ + DE + +I E  + E + K RL+ K     
Sbjct  475   DMTQAVADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITE--DQEEDVKQRLKSKWSRIE  532

Query  528   -LLGSEARLHDLAVDFVQHFAKRNEVVDSKAMMVVSSRQICVDLYNQIIALHPEWHSDNI  586
              L G+ +R++ LA D++QHF  R++ + +K+M+V  SR+I VDLY++II L PEWHSD+ 
Sbjct  533   ALAGAKPRVEALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDD  592

Query  587   NEGAIKIVMTGSASDASEMQKHVYSKQEKQTLERRFKDPNDPLKVVIVRDMWLTGFDAPC  646
             + G IK+VMTGS+SD++  Q+H+ +K+ +  LE+R KD ND L++VIVRDMWLTGFD P 
Sbjct  593   DKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPS  652

Query  647   CNTMYIDKPMQGHNLMQAIARVNRVFRNKSRENGGLIVDYVGIADELEKATRQYTNSQGK  706
              +TMYIDKPM+GHNLMQAIARVNRVF++K+   GGLIVDYVGIA+ L  A ++YT+S+  
Sbjct  653   MHTMYIDKPMKGHNLMQAIARVNRVFKDKP---GGLIVDYVGIAESLKEALKEYTESD--  707

Query  707   GKLADSVIDVFFKMKEHLEVIRSLFATPVEGKTFDVQAALEKDNPNDLLMAIRFAANHIL  766
                                               + Q+A++ D++ +L++ +++   + +
Sbjct  708   ----------------------------------QAQTAIDTDKAVELML-LKYDVIQDM  732

Query  767   --SLDQLSFDGKAHEQHWFNKKET--------EPRKKAFLKTAGLVKKGYMLCGALAEVE  816
               +LD   F++    ++ +   +T        E  ++ F+KT   + K++ LC++ +  +
Sbjct  733   LYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQ  792

Query  817   PYNQEIAFYDAVRAILTK--------REQKGTGTNERQILLKKLVNQTVYSEGVIDLFDL  868
               N+EIAF+ AV+A L K        + +K  +  E +I  ++LV+Q+V +E+VID+++ 
Sbjct  793   ELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEI--NQLVSQSVVTEDVIDVYQT  850

Query  869   LEKPQPQISLLSEEFLQTVKNSPTKNLWVSAMERYLASEIKVKSGTNLTLQKDFEKRLKE  928
             L   QP++S+LS++FL+ V     KN+ V  ++R L +++K    TN T+ K F   L +
Sbjct  851   LGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSLMKTNATVSKRFSEMLGN  910

Query  929   ALNQYHNHNLTVVEILDELFKMSQDFQERlalgkklgltkeelaFYEALSQNQSAKDLMG  988
             ++N+Y+++++    +++EL+++++D+++    G+ LGL  +E+AFY+AL  +++AK  M 
Sbjct  911   SINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALVSHETAKKAME  970

Query  989   DEVLSKLAKEITETLRKSVTIDWQYKEavrarirllvrralQKYKYPPDKQEEAVTYVIK  1048
             D  L  +A E+T T++ ++++DW  +++ +A++R+ VRR L+KY YPPD Q  AV  V+ 
Sbjct  971   DKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVE  1030

Query  1049  QAEEIAED  1056
             QAE +A +
Sbjct  1031  QAELMASN  1038

191) AL1_19090 in NC_021030


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  637 bits (2408),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 433/1045 (42%), Positives = 698/1045 (67%), Gaps = 56/1045 (5%)

Query  2     HFTEDDFENAILELFREQLGYDYVYGPNVI--------RDYAEPLYVEALEAVLPQINRG  53
             +F EDD+E+ +LE + E L+YDY  G ++         +   + +  E LE  L +IN +
Sbjct  4     QFNEDDLEQVVLEWL-ESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSD  62

Query  54    LPQAAIDEAMVKIRTYEGGTLVQKNELFTDYLQNGVAVNYFDGREQCSAN-VRLVDYDSP  112
             +    I+ A+  +    +  L+++N  F + L NG+ ++ +D+  Q   + V++VD++ P
Sbjct  63    IHPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHP  122

Query  113   LHNRFTIANQWTV-DGHSVRRADMIVFVNGLPLVVVELKSPSRENTDVSEAYAQLRNYMQ  171
              +N F   NQ TV +G+  +R+D+++F+NGLP+VV+ELK+++ E  +V ++Y QL  Y  
Sbjct  123   QNNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKM  182

Query  172   EIPSLFIYNAFCVMSDQGMTKAGTITAGEDRFMQWKTVDGSYEDTHS-ANFDVLFAGMFE  230
              IP LF +N   V SD   TKAG++TA  DRFM W++ DG  E + S A++DVL+ GM++
Sbjct  183   RIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLN  242

Query  231   KTRFVELLRNFICYSKDGKQRV-KILSAYHQFYAVRKAVLSTV--KAAETDGRGGVFWHT  287
                +++L+R F+ +  DGK ++ KIL+AYHQ+YAV KAV  ++   +++ DG+GGV+WHT
Sbjct  243   PKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHT  302

Query  288   QGSGKSLSMVFFAKQLQQAMSSPTIVVLTDRNDLDGQLYRQFA-----CCRDFLRQTPVQ  342
             QGSGKSL+MVFF+ +L Q +++PT+V++TDRNDLD QLY  F        +++LRQTP Q
Sbjct  303   QGSGKSLTMVFFSGKLIQMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQ  362

Query  343   AESRAHLRELLAGREANGIFFSTMQKFEESEE-----PLSIRRNIVVMADEAHRSQYGLE  397
             AE+R +L+ LL+  E+ GI F+TMQKFE  ++     +L+ R+N++VMADEAHR+QYG++
Sbjct  363   AETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFN  421

Query  398   ERVRMVTDADGVMQAKVVIGAARLVRNALPNATYIGFTGTPIAQKDRSTREVFGDYIDVY  457
              +      ++G+       G A+ +R+ALPNAT++GFTGTP+A  D++T+ VFG+YIDVY
Sbjct  422   AKYD--DKGEGIK-----YGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVY  474

Query  458   DMTQSVDDGATRPVFYESRVINLKLDEQTLRRIdaeydamaeeaeeyVIEKSKRELGRLD  517
             DMTQ+V DG+T  ++YESRVI L+L  Q+L  +D  Y+ ++E+ EE V ++ K   +R++
Sbjct  475   DMTQAVADGSTVKIYYESRVIPLNL-PQSLD-LDEAYNDITEDQEEDVKQRLKSKWSRIE  532

Query  518   SIFGADATVASLCEDIVKHYEEFRQYEQTGKAMIVAYSRPIAIKIYRRILEMRPVW----  573
             ++ GA + V +L  DI++H+E  RQ    GK+MIV+ SR IA+ +Y  I+ ++P W    
Sbjct  533   ALAGAKPRVEALAKDIIQHFET-RQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDD  591

Query  574   GDK--LAVVMTSGNKDPEDWRAIIGNDSHKKELEKRFKDNDSSLKIVIVVDMWLTGFDVP  631
             +DK  + VVMT+++ DP   +  IG   ++  LEKR KD +  L++VIV DMWLTGFDVP
Sbjct  592   DDKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVP  651

Query  632   SLSTMYVYKPMSGHNLMQAIARVNRVFGDKQGGLVVDYVGIASALKTAMNDYTYRDRKNY  691
             S+ TMY+ KPM GHNLMQAIARVNRVF DK GGL+VDYVGIA +LK A+++YT  D+   
Sbjct  652   SMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQ---  708

Query  692   GDTDVAKTAYPEFQK-KLDVCRDLMYGFNYGAFFGKSDLERAKAISGGVDFMQSPERMET  750
             ++T +      E+   K DV +D++Y ++Y+ F +    ER  +IS  +D++ +    E 
Sbjct  709   AQTAIDTDKAVELMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDER  768

Query  751   KKLYIKEALLLRQALSLCQSLLNYEQ-RIEAAYFEAVRTLLTRV-----EGKGKISFREI  804
             ++ +IK    L +A++LC +    ++   E A+F AV++ L ++     EGK + +  E+
Sbjct  769   QR-FIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEV  827

Query  805   NGRINELLKQSIKSEGVINLFSDI---KEEFSLFDPKFLEEVARMKERNFAVELLRRLIA  861
             ++ IN+L+ QS+ +E+VI+++  +   + ++S++   FL +V  +K++N AVELL RL+ 
Sbjct  828   EAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLK  887

Query  862   EQVQLYQRTNTVRAEKFSEILSDAMSRYLKGMLTNEEVIEELLKIAREIVFGEKAGESLN  921
              QV+   +TN+  + +FSE+L++++++Y    +    VIEEL+++A++I   ++ G+ L 
Sbjct  888   GQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELG  947

Query  922   LNSEELAFYDALTKPEAVKDFYSNDQLIAITRELTDALRRNKTIDWNMKESARAGMRRIV  981
             LNS+E+AFYDAL   E+ K    + +L AI++ELT +++ N ++DW+ ++SA+A MR  V
Sbjct  948   LNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAV  1007

Query  982   KRLLKKYDYPPAGQEDALNTIMEQC  1006
             +RLLKKY+YPP  Q  A++ ++EQ 
Sbjct  1008  RRLLKKYGYPPDLQKMAVEQVVEQA  1032

192) hsdR_1 in NC_014370


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  637 bits (2409),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 419/1040 (41%), Positives = 684/1040 (66%), Gaps = 51/1040 (4%)

Query  2     PFTEDNYEKALISLFEGMGYQYLYGPNIERDYYVP--------YYEAQLEESLQTVNPKK  53
              F ED+ E+ ++  +E+++Y+Y  G +I      P          + +LE +L+ +N+  
Sbjct  4     QFNEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDI  63

Query  54    PHAAIHEAIIKLRNIDMGSLAQRNETFTDYLQHGIEV-SYFNGKEMRNEMVYLIDFEHTE  112
                 I+ AI  L      +L + N TF + L +GIE+  Y +  +   E+V ++DFEH +
Sbjct  64    HPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQ  123

Query  113   KNTFQVINQWTFIENA-EKRADIIVFVNGLPLVVVELKSPSREETDASEAYLQLRNYMKD  171
             +N F  +NQ T ++    KR+DI++F+NGLP+VV+ELK+++ E  +  ++Y QL  Y   
Sbjct  124   NNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  172   IPSLFAFNMFCVMSDMALSKAGTITSKEDRYMEWKTKDGNYESTE-FIDYDTFFEGIFQR  230
             IP LF+FN   V SD   +KAG++T++ DR+M W++KDG+ ES+  +   D +++G+++ 
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNP  243

Query  231   ERLLDIIKNFICFAKEEKGS-AKILAGYHQYFAVKKAIERT--KHATVSNGKIGVFWHTQ  287
               LLD+I+ F+ F  + KG  +KILA+YHQY+AV+KA++R+    +  ++GK GV+WHTQ
Sbjct  244   KTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQ  303

Query  288   GSGKSLSMVFYAHLLQQELSQPTIVVITDRNDLDDQLYTQFSKCKE-----FLRQTPVQA  342
             GSGKSL+MVF++  L Q L++PT+V++TDRNDLD+QLY+ F K K      +LRQTP QA
Sbjct  304   GSGKSLTMVFFSGKLIQMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQA  363

Query  343   NSRENLKELLSGREANGIIFTTMQKFEESDE-----PLSERRNIIVMTDEAHRGQYGFEE  397
             ++R +LK LLS  E+ GI+FTTMQKFE  ++     +L+ER+N+IVM+DEAHR QYGF+ 
Sbjct  364   ETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFNA  422

Query  398   KVDATTGKVSIGTARIIHNSLPNASYIGFTGTPISTKDRDTVEVFGDYIDIYDMTQAVND  457
             K D     +  G A+ ++++LPNA+++GFTGTP+++ D++T  VFG+YID+YDMTQAV D
Sbjct  423   KYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVAD  482

Query  458   GATCPVYYESRVINLNLDDATlqalddeyellaeeGATTEQIEKSKKEMSHLEEILGAPA  517
             G+T  +YYESRVI LNL ++       +     +E    +++   K   S++E + GA +
Sbjct  483   GSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQRL---KSKWSRIEALAGAKP  539

Query  518   TIDSLCQDILKHYEENRQYELTGKAMIVAYSRPIAMSIYHRLLELRPTWTDK------VK  571
              +++L +DI++H+E  RQ  + GK+MIV+ SR IA+ +Y+ ++ L+P W         +K
Sbjct  540   RVEALAKDIIQHFE-TRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIK  598

Query  572   VVMTGSNQDPEEWHDIIGNKQYKKELARRFKDDNDPMKIAIVVDMWLTGFDVPSLATMYV  631
             VVMTGS+ DP   +  IG K+ +  L +R KD ND +++ IV DMWLTGFDVPS+ TMY+
Sbjct  599   VVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYI  658

Query  632   YKPMSGHNLMQAIARVNRVFNGKVGGLVVDYIGIAKALKEAMRDYTGRDRKNFGNPDIKG  691
              KPM GHNLMQAIARVNRVF++K GGL+VDY+GIA +LKEA+++YT  D+ + +    K+
Sbjct  659   DKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKA  718

Query  692   MAFTKFKEKLEVCQDLFHGYNYSRFHTGTDADRAKLIKGGVNFMLATDKQEQLPLYMKEA  751
             + +  +  K +V QD++   +YS+F++   ++R   I   ++++++ + +E+   ++K  
Sbjct  719   VELMLL--KYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIGLGEDERQR-FIKTV  775

Query  752   ALLHNSITLCRSLLNKEQRFLA---AFFETVRTLLSRM-----TGKGKVTKKEINARISE  803
             + L ++++LC +    ++  L    AFF +V++ L ++      GK + T  E++A I++
Sbjct  776   TELGKAFALCATEPTAQE--LNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQ  833

Query  804   LLKQSVKSEGVINLFSDV---KAEFSLFDTAFLDEISKMKEKNIavellkkllaekvalY  860
             L+ QSV +E+VI+++  +   ++++S++   FL ++  +K+KN+AVELL++LL  +V   
Sbjct  834   LVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVKSL  893

Query  861   QKTNIVQSEKFSDLLNRSLSNYLKGLLTNEEVIQELLQLAKEIASADSAANELGLTPEEK  920
              KTN   S +FS++L  S+++Y    +    VI+EL+QLAK+I   +  +NELGL ++E 
Sbjct  894   MKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEI  953

Query  921   SFYDALTKPQAIHDFYSNEELVAMTKELTDSLRKNRTIDWQKKESARAGMRRMIKHLLKK  980
             +FYDAL   ++      +  L A++ ELT +++ N ++DW K++SA+A MR  +++LLKK
Sbjct  954   AFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKK  1013

Query  981   YHYPPEEAANALETVIKQCE  1000
             Y YPP+    A+E V+ Q E
Sbjct  1014  YGYPPDLQKMAVEQVVEQAE  1033

193) FP2_13030 in NC_021042


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  624 bits (2358),  Expect = 1e-179, Method: Compositional matrix adjust.
 Identities = 436/1054 (42%), Positives = 696/1054 (67%), Gaps = 61/1054 (5%)

Query  5     FTESNYENAVLQLLNEELGYNYIYGPDVERDYHSP--------LYEDVLLPSLQRINKSL  56
             F E + E+ VL+ L E L+Y+Y  G ++     +P        + ++ L  +L++IN  +
Sbjct  5     FNEDDLEQVVLEWL-ESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDI  63

Query  57    PMDALTEAIYKLKNFETGTLLQKNMVFMDYLQNGVPVKYYDK-GEERSTLVYLVDFKNPA  115
                 +  AI  L    +  LL++N+ F + L NG+ +  YD  G+    +V +VDF +P 
Sbjct  64    HPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQ  123

Query  116   SNEFTVANQWTFIENS-EKRPDVILFVNGLPLVIVELKSPSREETDASAAYRQLRNYMYE  174
             +N+F   NQ T ++    KRPD++LF+NGLP+V++ELK+++ E  +   +Y+QL  Y   
Sbjct  124   NNDFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMR  183

Query  175   IPSMFIYNAVCVMSDLTTSKAGTITSGEDRFMEWKTTDGSYENTQH-ASFDTFFVGLFEK  233
             IP +F +N V V SD   +KAG++T+  DRFM W++ DG  E++   AS+D ++ G+++ 
Sbjct  184   IPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNP  243

Query  234   TRFLDIVKNFICFNVDGQNTF-KILAGYHQYFAVKKAIEST--KHATVTDGKGGVFWHTQ  290
               +LD+++ F+ F+ DG+  + KILA+YHQY+AV+KA++ +    +   DGKGGV+WHTQ
Sbjct  244   KTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQ  303

Query  291   GSGKSLSMVFYAHYLQEALESPTIVVITDRNDLDDQLYGQFARCKD-----FLRQTPQHA  345
             GSGKSL+MVF++  L + L++PT+V++TDRNDLD+QLY+ F + K+     +LRQTP++A
Sbjct  304   GSGKSLTMVFFSGKLIQMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQA  363

Query  346   ESRKNLKELLANRQANGIIFTTMQKFEESNE-----ALSERRNIIVMADEAHRGQYGLNE  400
             E+RK+LK LL+  ++ GI+FTTMQKFE  ++     AL+ER+N+IVMADEAHR QYG+N 
Sbjct  364   ETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFNA  422

Query  401   KVVVKQKDNGEVEAKTVIGTARIIRDTLPNATYIGFTGTPISTKDRSTREVFGDYIDIYD  460
             K    +K++G        G A+ +RD+LPNAT++GFTGTP+++ D++T+ VFG+YID+YD
Sbjct  423   KY--DDKGEG-----IKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYD  475

Query  461   MTQAVEDGATRPVYYESRVIHLKLDENTLHLIDNEYDIMADNADPYVIEKSKKELGQMEA  520
             MTQAV DG+T  +YYESRVI L+L + +L+L D+ Y+ ++++ +  V ++ K   +++EA
Sbjct  476   MTQAVADGSTVKIYYESRVIPLNLPQ-SLDL-DEAYNDITEDQEEDVKQRLKSKWSRIEA  533

Query  521   ILGADQTINSLVNDILDHYENYRENILTGKAMIVAYSRPIAMKIYKRILELRPAWTEK--  578
             + GA   +++L +DI++H+E  R++ + GK+MIV+ SR IA+ +Y  I+ L+P W     
Sbjct  534   LAGAKPRVEALAKDIIQHFET-RQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDD  592

Query  579   ----IAVVMTQGNNDPEEWREIIGNKAHKDDMARKFKDNNSPLKIAIVVDMWLTGFDVPS  634
                 I VVMT +++DP   +  IG K ++  + ++ KD N  L++ IV DMWLTGFDVPS
Sbjct  593   DKGVIKVVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPS  652

Query  635   LATMYVYKPMAGHNLMQAIARVNRVFKDKEGGLVVDYVGIAAALKQAMNDYTARDKKNYG  694
             + TMY+ KPM GHNLMQAIARVNRVFKDK GGL+VDYVGIA +LK+A+++YT  D+ +  
Sbjct  653   MHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQ-T  711

Query  695   DTDVSKAAYPKFLEKLSICRDLFHGFSYEKFMTGSDLDRAKLISGGVNFILGKSVAEYEL  754
               D  KA    +L K  + +D++  + Y KF +    +R   IS  +++++G       L
Sbjct  712   AIDTDKAVELMLL-KYDVIQDMLYNLDYSKFNSEKKSERYYTISNTMDYVIG-------L  763

Query  755   PDHEKTQNVFIKEALLLKQALSLCSS-LVDEQTRMEAAFFESVRTMTVRLV---SGGTGK  810
              ++E+ +  FIK    L +A++LC++    ++   E AFF +V++  V+L+     G  +
Sbjct  764   GEDERQR--FIKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTR  821

Query  811   KFTLPEVNERINELLKHSIKSEGVINLFSDV---QTEFSLFDPKFLEEVANMKEKNLAVE  867
             K T +EV+  IN+L+ +S+ +E+VI+++  +   Q ++S++   FL +V  +K+KN+AVE
Sbjct  822   K-TPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVE  880

Query  868   LLKKLISEQVSVYRRTNIVKSEKFSEIIQSAMNRYLNGMLTNEEVIQellklakdiaaaa  927
             LL++L+  QV    +TN   S +FSE++ +++N+Y +  +    VI+EL++LAKDI    
Sbjct  881   LLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQ  940

Query  928   aegeklgltaDELAFYDALTKPQAIKDFYEHDELIAITKELTDLLRKNQTIDWQKKESAR  987
               G+ LGL +DE+AFYDAL   ++ K   E+  L AI+ ELT  ++ N ++DW K++SA+
Sbjct  941   QRGNELGLNSDEIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAK  1000

Query  988   AGMrrlvkrllkkHKYPPEGMDDAVQTVMSQCEM  1021
             A MR  V+RLLKK  YPP+    AV+ V+ Q E+
Sbjct  1001  AKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAEL  1034

194) hsdR in NC_016052


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  616 bits (2326),  Expect = 3e-177, Method: Compositional matrix adjust.
 Identities = 436/1043 (42%), Positives = 693/1043 (67%), Gaps = 58/1043 (5%)

Query  3     FAEDNYENAIIELFCDKLDYDY-------VPGWDVDRDYNEPLYLDE-LMTSLERINPTL  54
             F ED+ E+ ++E + + L YDY       + G   +R  +  + L+E L  +L +IN+ +
Sbjct  5     FNEDDLEQVVLEWL-ESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDI  63

Query  55    SRAAIDEAVNKLRRFDNGTLVQINKVFTSYLQNGIEV-SYYDRGEQKASLVKLVDFENIS  113
                 I+ A++ L    +  L++ N  F   L NGIE+  Y D G+    +VK+VDFE+  
Sbjct  64    HPRFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQ  123

Query  114   KNSFTVINQWTI--DEYSRKRPDVLVFLNGIPVVVFELKSPSREETNASDAYLQLKTYQK  171
             +N F  +NQ T+  ++Y+ KRPD+++F+NG+P+VV+ELK+++ E     D+Y QL TY+ 
Sbjct  124   NNDFLAVNQFTVVNGDYT-KRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKM  182

Query  172   EIPSLFNYNAFCVMSDLAISKAGTITAGEDRFMEWKTIDGSYENTQ-YAQWDTLIEGMFE  230
              IP LF +N   V SD   +KAG++TA  DRFM W++ DG  E++   A  D LI+GM++
Sbjct  183   RIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLN  242

Query  231   KKRFLDILENFICFSDDAK-----ILAAYHQYFAVHKAVVSAI--KATETDGRGGVFWHT  283
              K +LD++  F+ F DD+K     ILAAYHQY+AV+KAV  A+   + + DG+GGV+WHT
Sbjct  243   PKTLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHT  302

Query  284   QGSGKSLSMVFFTHMIQKILNLPTVVILTDRNDLDEQLYAQFAKCTN-----FLRQEPVQ  338
             QGSGKSL+MVFF+  + ++LN PT+VI+TDRNDLD+QLY+ F K        +LRQ P Q
Sbjct  303   QGSGKSLTMVFFSGKLIQMLNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQ  362

Query  339   ASNREELKNLLDGRQANGIIFSTMQKFVESEE-----PLSERRNIIVMADEAHRGQYGLD  393
             A  R ELK+LL   ++ GI+F+TMQKF   ++     +L+ER+N+IVMADEAHR QYG++
Sbjct  363   AETRKELKSLLSV-ESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFN  421

Query  394   EKVDTKTGQIKFGAARRVRDSLPNASYIGFTGTPISKKDKSTTEVFGNYIDVYDMTQAVE  453
              K D K   IK+G A+ +RD+LPNA+++GFTGTP++  DK+T  VFGNYIDVYDMTQAV 
Sbjct  422   AKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVA  481

Query  454   DGATRPVYYESRVIHLKLDNDVLKHIDDEYDLMAESADSQAIEKSKQELGRLDSILGAEQ  513
             DG+T  +YYESRVI L+L + +  ++D+ Y+ ++E  + +  ++ K   +R++++ GA  
Sbjct  482   DGSTVKIYYESRVIPLNLPQSL--DLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKP  539

Query  514   TINALVDDIVQHYEENREQELTGKAMVVAYSRSIAIKIYHKMLEKRPSWAK------TIG  567
              ++AL  DI+QH+E  R+Q + GK+M+V+ SR IA+ +Y+ ++  +P W         I 
Sbjct  540   RVEALAKDIIQHFE-TRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIK  598

Query  568   VVMTSSNNDPEEWHNIIGNkkhkeemakkfkDSDDEFKIAIVVDMWLTGFDVPSLATMYV  627
             VVMT+S++DP   +  IG KK++  + K+ KD +DE+++ IV DMWLTGFDVPS+ TMY+
Sbjct  599   VVMTGSSSDPTSFQRHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPSMHTMYI  658

Query  628   YKPMSGHNLMQAIARVNRVYKEKEGGLIVDYVGIAGALKQAMNDYTQRDKSN--FGDPNV  685
              KPM GHNLMQAIARVNRV+K+K GGLIVDYVGIA +LK+A+++YT+ D+++  ++  + 
Sbjct  659   DKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKA  718

Query  686   AETALPKFKEKLEVCRDIFHGLDYSAFLDEDATNLTRAKIISGGVNFLSSIDKEEQKEEY  745
              E  L K+    +V +D++  LDYS F  E  ++  R   IS  ++++ +++ E++++ +
Sbjct  719   VELMLLKY----DVIQDMLYNLDYSKFNSEKKSE--RYYTISNTMDYVIGLG-EDERQRF  771

Query  746   lkqalllrqalql-crsllGarerfeaayfeaVRTVLTRI---SGEGD-KLSLKEINGRI  800
             +K    L +A+ L      +     E A+F AV++ L ++   + EG  + +  E+++ I
Sbjct  772   IKTVTELGKAFALCATEPTAQELNDEIAFFKAVKAGLVKLLQPPKEGKTRKTPAEVEAEI  831

Query  801   NSLLKASIKSEGVVNLFSD---AETEFSLFDPQFLDEIANMKEKNLAVELLKKLIAEQIS  857
             N L+  S+ +E+V++++      + ++S++  +FL ++  +K+KN+AVELL++L+  Q+ 
Sbjct  832   NQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVELLNRLLKGQVK  891

Query  858   LYKQTNLVKSKKFSEMLSNSMKAYLNGMLTNEEVIQELKDMAKDMKNATEEGTDLGLTDE  917
                +TN   SK+FSEML+NS++ Y +  +    VI+EL ++AKD+K+  + G +LGL  +
Sbjct  892   SLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSD  951

Query  918   ELAFYDAITKPEAVEDFIENDQLVSLTHELTDMLRKSRTVDWQKKESARAHMrrkvkkll  977
             E+AFYDA+   E+    +E+ +L +++HELT  ++ + +VDW K++SA+A MR  V++LL
Sbjct  952   EIAFYDALVSHETAKKAMEDKKLRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLL  1011

Query  978   rkykyPPEGMEEAISTVTQQCEL  1000
             +KY YPP+    A+  V +Q EL
Sbjct  1012  KKYGYPPDLQKMAVEQVVEQAEL  1034

195) M493_07025 in NC_022080


> NC_007168_R1|40|G40|70725063|YP_251977.1|Staphylococcus_haemolyticus_JCSC1435|-|39149..42268|hsdR|SH0062|type 
I restriction-modification 
system restriction subunit
Length=1039

 Score =  440 bits (1658),  Expect = 2e-124, Method: Compositional matrix adjust.
 Identities = 306/732 (42%), Positives = 478/732 (66%), Gaps = 47/732 (6%)

Query  7    GETEFEETTIERLKRLGYDYLHAQELFQRG---ERNSLHEVVLYGRLEAFLKKAYPAIPE  63
             E ++E+  +E+L  L+YDY  ++E+   G   ER+S  +VVL  RLE  L+K  + I  
Sbjct  6    NEDDLEQVVLEWLESLSYDYKKGNEISMTGLAPERKSDKDVVLHERLEKALRKINSDIHP  65

Query  64   HEIKRLAQVLTAPDEVKLINRNMHFHKMLTKGLEF-SYEVNDETYTPHVFPIDWEHPENN  122
            + I +  + LT     +L++ N+ FH  L +G+E+  Y+ ++++    V  +D EHP+NN
Sbjct  66   RFIEKAIHELTLEKSPNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIVDFEHPQNN  125

Query  123  DFLVVNQLSI-EGRMSRRPDIVIYINGLPLIVFELKNPNNEQATVYDAYTQIQNYTYDIS  181
            DFL VNQ+++ +G  ++RPDIV++INGLP++V+ELKN+ NE   V D+Y Q++ Y   I+
Sbjct  126  DFLAVNQFTVVNGDYTKRPDIVLFINGLPIVVIELKNSTNETVGVEDGYHQLETYKMRIP  185

Query  182  QLFNYNAFVVISDNVETKHGMPFADYDFFASWKSIDGRNVDNNRANTMRTLIEGLFPKDR  241
            QLF +N  +V SD ++TK G   A+YD F +W+S DG    ++   ++  LI+G++    
Sbjct  186  QLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGETESSSSLASLDVLINGMLNPKT  245

Query  242  LLNYIRNFIVFLEEG-SKITKVGAKYHQFFGVNFAVNEAIRATRPDGDRKIGVMYHTTGS  300
            LL+ IR F++F ++G + I+K+ A YHQ+++VN AV+ A+ A+  +GD K GV+ HT GS
Sbjct  246  LLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQGS  305

Query  301  GKSLSMLFFVGILSRHPEMENPSIVIQVDRNDLDEQLHDTFVQGKSYIGHV------HHA  354
            GKSL+M+FF G L +   ++NP++VI  DRNDLD+QL  TFV++K+  G         +A
Sbjct  306  GKSLTMVFFSGKLIQM--LNNPTLVIVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQA  363

Query  355  ENTEQLRTLLRGEAGQIIFSTIEKFRKKEGETRHPVLSERRNIVVIADEAHRTQ---agf  411
            E   +L++LL  E+G I+F+T++KF   + ET  + L+ER+N++V+ADEAHRTQ    + 
Sbjct  364  ETRKELKSLLSVESGGIVFTTMQKFEPEQNETIMAALTERKNVIVMADEAHRTQYGFNAK  423

Query  412  aggfaaQLRY--------ALPNASYIGFTGTPVDFVDNNTEEIFGHIIHRYDMAQAVEDK  463
             ++ +  ++Y        ALPNA+++GFTGTPV   D+NT+ +FG+ I+ YDM+QAV D 
Sbjct  424  YDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAVADG  483

Query  464  ATLPIYYESRLIPLDLSAG-DIDEKYRKiieeaggddeesesYKRKWAALEKVVGTPKRL  522
            +T+ IYYESR+IPL+L+ + D+DE Y       + +++  +  K KW+ +E + G+  R+
Sbjct  484  STVKIYYESRVIPLNLPQSLDLDEAYND--ITEDQEEDVKQRLKSKWSRIEALAGAKPRV  541

Query  523  RRLAKDIVSHFNQVANPFQ-KAMIVCMSRRIAVDLYNYL--------REIPECPPVEVIM  573
              LAKDI+ HF+   ++ + K+MIV MSRRIAVDLY+ +         +  +   + V+M
Sbjct  542  EALAKDIIQHFETRQQAMKGKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVM  601

Query  574  TGDVSKDPKEWREVQPGSKYAHIKSKKEQEEVKAKLRDPEDPLKFVIVVDMWLTGMDAKP  633
            TG  S DP   +         HI +KK +  +  +++D +D L++VIV DMWLTG D  +
Sbjct  602  TGS-SSDPTSFQ--------RHIGPKKRRSVLEKRMKDVNDELQLVIVRDMWLTGFDVPS  652

Query  634  LSYLYIDKPMKGHNLMQAIARVNRVFPGKEGGVVVDYIGIATSLKEATHKYTQSGGTGSP  693
            +  +YIDKPMKGHNLMQAIARVNRVF +K GG++VDY+GIA SLKEA   YT+S+ + ++
Sbjct  653  MHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTA  712

Query  694  TYDISEAVNIFM  705
              D   AV++ +
Sbjct  713  I-DTDKAVELML  723